Citrus Sinensis ID: 029450

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MSLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQEELMMNL
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHcccccEEccccccEEEEEcccccHHHHHHHHHHHHHHcccccccEEEcccEEEEEEEEEcccccEEEcccccEEEEcccccccccccccccHHHHHHHHHHHHcccccccEEEEcEEccccccccccccccccccccccEEEEEccccEEEEEEEccccccEEEEEccc
Secondary Structure Prediction (SSPRO)
cccHEEccccccccccccccccccccccEEEEcccccEEEEccccccHHHHHHHHHHHHHHccccccEEEEEccEEccccccccccEEEEEccccccEEEEccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccHHcccccEEEEEEccccEEEEEEEcccccEEEEEEEcc
Coil and Loop (DISEMBL)
MSLRFRAKekeakanpddddeknqkKQRMVVDlgngseviyfpriikmEDSWKFFDYlnnripwnrptirVFGRSCLQVacistprdtcyvaseGVTQLIYsgyrphpyswddfpplkdILDIVLKvlpgsrfnSLLLNRYkggndyvgwhaddeklygstpeiasvsfgcerdfllkikpskSYQEELMMNL
Flexible Loop (DISEMBL)
mslrfrakekeakanpddddeknqkkqrmvvdlgngseviyfprIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLlkikpsksyqeelmmnl
Low Complexity Region (SEG)
MSLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQEELMMNL
Disordered region (IsUnstruct)
*****************************VVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKI**************
Disordered Region (DISOPRED)
**********************************NGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP*******LMMN*
Disordered Region (DISEMBL)
*************************KQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSY********
Disordered Region (DISPRO)
**************************QRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQEELMMNL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQEELMMNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
Q58DM4	278	Alpha-ketoglutarate-depen	yes	no	0.549	0.381	0.370	1e-10
Q6NS38	261	Alpha-ketoglutarate-depen	yes	no	0.549	0.406	0.387	2e-10
Q6P6J4	239	Alpha-ketoglutarate-depen	yes	no	0.549	0.443	0.379	2e-10
Q32L00	286	Alpha-ketoglutarate-depen	no	no	0.673	0.454	0.302	2e-08
Q5XIC8	295	Alpha-ketoglutarate-depen	no	no	0.269	0.176	0.538	2e-08
Q96Q83	286	Alpha-ketoglutarate-depen	no	no	0.673	0.454	0.295	3e-08
Q8K1E6	286	Alpha-ketoglutarate-depen	no	no	0.253	0.171	0.551	7e-08

>sp|Q58DM4|ALKB2_BOVIN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Bos taurus GN=ALKBH2 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 10/116 (8%)

Query: 69  IRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 128
           ++VFG+        S PR        G+T   +SG    P  W   P L+ + D V  ++
Sbjct: 98  VQVFGK------WHSVPRKQATYGDTGLT-YTFSGLTLSPKPW--IPVLERVRDRV-SLV 147

Query: 129 PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKS 184
            G  FN +L+NRYK G D++G H DDE+       IASVSFG  RDF+ + K S+ 
Sbjct: 148 TGQTFNFVLINRYKDGQDHIGEHRDDERELALGSPIASVSFGACRDFVFRHKDSRG 203

Dioxygenase that repairs alkylated DNA and RNA containing 1-methyladenine and 3-methylcytosine by oxidative demethylation. Can also repair alkylated DNA containing 1-ethenoadenine (in vitro). Has strong preference for double-stranded DNA. Has low efficiency with single-stranded substrates. Requires molecular oxygen, alpha-ketoglutarate and iron.
Bos taurus (taxid: 9913)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

>sp|Q6NS38|ALKB2_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Homo sapiens GN=ALKBH2 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 59/116 (50%), Gaps = 10/116 (8%)

Query: 69  IRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 128
           ++VFG+        S PR        G+T   +SG    P  W   P L+ I D V  V 
Sbjct: 99  VQVFGK------WHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGVT 149

Query: 129 PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKS 184
            G  FN +L+NRYK G D++G H DDE+       IASVSFG  RDF+ + K S+ 
Sbjct: 150 -GQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSRG 204

Dioxygenase that repairs alkylated DNA and RNA containing 1-methyladenine and 3-methylcytosine by oxidative demethylation. Can also repair alkylated DNA containing 1-ethenoadenine (in vitro). Has strong preference for double-stranded DNA. Has low efficiency with single-stranded substrates. Requires molecular oxygen, alpha-ketoglutarate and iron.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q6P6J4|ALKB2_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Mus musculus GN=Alkbh2 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 10/116 (8%)

Query: 69  IRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 128
           ++VFG+        S PR        G+T   +SG    P  W   P L+ + D V +V 
Sbjct: 77  VQVFGK------WHSVPRKQATYGDAGLT-YTFSGLTLTPKPW--VPVLERVRDRVCEVT 127

Query: 129 PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKS 184
            G  FN +L+NRYK G D++G H DDE+       IASVSFG  RDF+ + K S+ 
Sbjct: 128 -GQTFNFVLVNRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFIFRHKDSRG 182

Dioxygenase that repairs alkylated DNA and RNA containing 1-methyladenine and 3-methylcytosine by oxidative demethylation. Can also repair alkylated DNA containing 1-ethenoadenine. Has strong preference for double-stranded DNA. Has low efficiency with single-stranded substrates. Requires molecular oxygen, alpha-ketoglutarate and iron.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q32L00|ALKB3_BOVIN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Bos taurus GN=ALKBH3 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 37  SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGV 96
           S V   P  + ++++   F+ L   +PW + T                PR T +      
Sbjct: 88  SRVCLCPGFVDLKEADSVFEQLCRDVPWKQRT------GIRDDVTYQQPRLTAWYG---- 137

Query: 97  TQLIYSGYR----PHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHA 152
            +L Y+  R    P+P+    + P+  +L   ++   G  FNSLL N Y+   D V WH+
Sbjct: 138 -ELPYTYSRITMEPNPH----WHPVLLMLKNQIEENTGHSFNSLLCNLYRNEKDSVDWHS 192

Query: 153 DDEKLYGSTPEIASVSFGCERDFLLKIKP 181
           DDE   G  P IAS+SFG  R F ++ KP
Sbjct: 193 DDEPSLGRCPIIASLSFGATRMFEMRKKP 221

Dioxygenase that repairs alkylated DNA containing 1-methyladenine (1meA) and 3-methylcytosine (3meC) by oxidative demethylation. Has a strong preference for single-stranded DNA. Able to process alkylated 3mC within double-stranded regions via its interaction with ASCC3, which promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3. May also act on RNA. Requires molecular oxygen, alpha-ketoglutarate and iron.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q5XIC8|ALKB3_RAT Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Rattus norvegicus GN=Alkbh3 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 33/52 (63%)

Query: 130 GSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP 181
           G  FNSLL N Y+   D V WH+DDE   GS P IAS+SFG  R F ++ KP
Sbjct: 170 GHTFNSLLCNFYRDEKDSVDWHSDDEPSLGSCPVIASLSFGATRTFEMRKKP 221

Dioxygenase that repairs alkylated DNA containing 1-methyladenine (1meA) and 3-methylcytosine (3meC) by oxidative demethylation. Has a strong preference for single-stranded DNA. Able to process alkylated 3mC within double-stranded regions via its interaction with ASCC3, which promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3. May also act on RNA. Requires molecular oxygen, alpha-ketoglutarate and iron.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q96Q83|ALKB3_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Homo sapiens GN=ALKBH3 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 19/149 (12%)

Query: 37  SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGV 96
           S V  +P  + ++++    + L   +PW + T         +      PR T +      
Sbjct: 88  SRVCLYPGFVDVKEADWILEQLCQDVPWKQRT------GIREDITYQQPRLTAWYG---- 137

Query: 97  TQLIYSGYR----PHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHA 152
            +L Y+  R    P+P+    + P+   L   ++   G  FNSLL N Y+   D V WH+
Sbjct: 138 -ELPYTYSRITMEPNPH----WHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHS 192

Query: 153 DDEKLYGSTPEIASVSFGCERDFLLKIKP 181
           DDE   G  P IAS+SFG  R F ++ KP
Sbjct: 193 DDEPSLGRCPIIASLSFGATRTFEMRKKP 221

Dioxygenase that repairs alkylated DNA containing 1-methyladenine (1meA) and 3-methylcytosine (3meC) by oxidative demethylation. Has a strong preference for single-stranded DNA. Able to process alkylated 3mC within double-stranded regions via its interaction with ASCC3, which promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3. May also act on RNA. Requires molecular oxygen, alpha-ketoglutarate and iron.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q8K1E6|ALKB3_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Mus musculus GN=Alkbh3 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 32/49 (65%)

Query: 133 FNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP 181
           FNSLL N Y+   D V WH+DDE   GS P IAS+SFG  R F ++ KP
Sbjct: 173 FNSLLCNFYRDEKDSVDWHSDDEPSLGSCPVIASLSFGATRTFEMRKKP 221

Dioxygenase that repairs alkylated DNA containing 1-methyladenine (1meA) and 3-methylcytosine (3meC) by oxidative demethylation. Has a strong preference for single-stranded DNA. Able to process alkylated 3mC within double-stranded regions via its interaction with ASCC3, which promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3. May also act on RNA. Requires molecular oxygen, alpha-ketoglutarate and iron.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
147777784	244	hypothetical protein VITISV_030147 [Viti	0.932	0.737	0.647	3e-66
224089559	240	predicted protein [Populus trichocarpa]	0.860	0.691	0.687	5e-65
297821443	307	oxidoreductase [Arabidopsis lyrata subsp	0.803	0.504	0.689	2e-63
18399917	314	oxidoreductase, 2OG-Fe(II) oxygenase-lik	0.761	0.468	0.725	9e-63
87162794	256	2OG-Fe(II) oxygenase [Medicago truncatul	0.834	0.628	0.656	8e-62
357448069	248	Alpha-ketoglutarate-dependent dioxygenas	0.834	0.649	0.656	9e-62
356532818	236	PREDICTED: alpha-ketoglutarate-dependent	0.823	0.673	0.666	6e-61
449434054	244	PREDICTED: alpha-ketoglutarate-dependent	0.906	0.717	0.624	3e-60
218197985	254	hypothetical protein OsI_22576 [Oryza sa	0.922	0.700	0.572	1e-57
86361423	253	oxidoreductase-like protein [Oryza sativ	0.922	0.703	0.572	1e-57

>gi|147777784|emb|CAN75733.1| hypothetical protein VITISV_030147 [Vitis vinifera]

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 121/187 (64%), Positives = 146/187 (78%), Gaps = 7/187 (3%)

Query: 1   MSLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNN 60
           M+ +F+A E ++     + +  N+  +R  +DLGNGS++IY PR +  E+SWK+FDYLN 
Sbjct: 1   MNFKFKA-ESKSTNPNPNPNPSNEGGKRQSIDLGNGSDLIYIPRFLAFEESWKWFDYLNK 59

Query: 61  RIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDI 120
            IPW RPTIRVFGRSC+Q      PRDTCYVAS G+ +L YSGY+PH Y+WDD+PPLKDI
Sbjct: 60  EIPWTRPTIRVFGRSCVQ------PRDTCYVASVGLPELSYSGYQPHAYTWDDYPPLKDI 113

Query: 121 LDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIK 180
           L  V K LPGS FNSLLLNRYKGGNDYVGWH+DDEKLYGSTPEIAS+SFGCER+F LK K
Sbjct: 114 LVXVHKALPGSSFNSLLLNRYKGGNDYVGWHSDDEKLYGSTPEIASISFGCEREFFLKKK 173

Query: 181 PSKSYQE 187
           PSK  Q+
Sbjct: 174 PSKVSQD 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089559|ref|XP_002308756.1| predicted protein [Populus trichocarpa] gi|222854732|gb|EEE92279.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (644), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 119/173 (68%), Positives = 140/173 (80%), Gaps = 7/173 (4%)

Query: 16  PDDDDEKNQK-KQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGR 74
           P++++ K +  + +  +DLGNGSEVIY  R I  E SW+FFDYLN  IPW RPTIRVFGR
Sbjct: 9   PENEEVKEESGRGKQSIDLGNGSEVIYIQRFIGFEKSWEFFDYLNKHIPWIRPTIRVFGR 68

Query: 75  SCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFN 134
            CLQ      PRDTCYVAS G+ +L+YSGY+PH  SWDDFPP+KD+LD+VL+ LPGS+FN
Sbjct: 69  QCLQ------PRDTCYVASPGLPELVYSGYKPHANSWDDFPPIKDLLDMVLEALPGSKFN 122

Query: 135 SLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQE 187
           SLLLN+YKGGND VGWHADDEKLYG TPEIASVSFGCER+FLLK +P KS QE
Sbjct: 123 SLLLNKYKGGNDNVGWHADDEKLYGPTPEIASVSFGCEREFLLKKRPMKSSQE 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821443|ref|XP_002878604.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297324443|gb|EFH54863.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 111/161 (68%), Positives = 129/161 (80%), Gaps = 6/161 (3%)

Query: 28  RMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRD 87
           R  +DLG+GS++IY  R +  + SW FFDYL+  IPW RPTIRVFGRSCLQ      PRD
Sbjct: 89  RRTIDLGHGSDLIYIQRFLPFQQSWTFFDYLDKHIPWTRPTIRVFGRSCLQ------PRD 142

Query: 88  TCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDY 147
           TCYVAS G+T L+YSGYRP+ YSWDDFPPLK+ILD + K LPGSRFNSLLLNRYKG +DY
Sbjct: 143 TCYVASSGLTALVYSGYRPNAYSWDDFPPLKEILDAIYKALPGSRFNSLLLNRYKGASDY 202

Query: 148 VGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQEE 188
           V WHADDEK+YG TPEIASVSFGCERDF+LK K  + + +E
Sbjct: 203 VAWHADDEKIYGPTPEIASVSFGCERDFVLKKKKHEEFSQE 243

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399917|ref|NP_565530.1| oxidoreductase, 2OG-Fe(II) oxygenase-like protein [Arabidopsis thaliana] gi|20198150|gb|AAD23616.2| expressed protein [Arabidopsis thaliana] gi|330252192|gb|AEC07286.1| oxidoreductase, 2OG-Fe(II) oxygenase-like protein [Arabidopsis thaliana]

 Score =  244 bits (624), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 111/153 (72%), Positives = 125/153 (81%), Gaps = 6/153 (3%)

Query: 28  RMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRD 87
           R  +DLG+GS++IY  R +  + SW FFDYL+  IPW RPTIRVFGRSCLQ      PRD
Sbjct: 96  RKTIDLGHGSDLIYIQRFLPFQQSWTFFDYLDKHIPWTRPTIRVFGRSCLQ------PRD 149

Query: 88  TCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDY 147
           TCYVAS G+T L+YSGYRP  YSWDDFPPLK+ILD + KVLPGSRFNSLLLNRYKG +DY
Sbjct: 150 TCYVASSGLTALVYSGYRPTSYSWDDFPPLKEILDAIYKVLPGSRFNSLLLNRYKGASDY 209

Query: 148 VGWHADDEKLYGSTPEIASVSFGCERDFLLKIK 180
           V WHADDEK+YG TPEIASVSFGCERDF+LK K
Sbjct: 210 VAWHADDEKIYGPTPEIASVSFGCERDFVLKKK 242

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87162794|gb|ABD28589.1| 2OG-Fe(II) oxygenase [Medicago truncatula]

 Score =  241 bits (616), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 113/172 (65%), Positives = 138/172 (80%), Gaps = 11/172 (6%)

Query: 12  AKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRV 71
           ++ NP++  +K++      +DLGNGS+V++  R+I  E SWK+F+YL+  IPW RPTIRV
Sbjct: 22  SEPNPNETAKKSE-----TIDLGNGSDVVFIQRLIPSEQSWKWFNYLDKHIPWTRPTIRV 76

Query: 72  FGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGS 131
           FG+S LQ      PRDTCYVA+ G+T+L YSGY+PH YSWDD+PPLKDILD V K LPGS
Sbjct: 77  FGKSFLQ------PRDTCYVATSGLTELSYSGYQPHAYSWDDYPPLKDILDAVHKALPGS 130

Query: 132 RFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183
            FNSLLLNRYKGG+DYVGWHADDEKLYG TPEIAS+S GC+RDF+LK KPSK
Sbjct: 131 SFNSLLLNRYKGGDDYVGWHADDEKLYGPTPEIASLSLGCDRDFVLKKKPSK 182

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448069|ref|XP_003594310.1| Alpha-ketoglutarate-dependent dioxygenase alkB-like protein [Medicago truncatula] gi|355483358|gb|AES64561.1| Alpha-ketoglutarate-dependent dioxygenase alkB-like protein [Medicago truncatula] gi|388502228|gb|AFK39180.1| unknown [Medicago truncatula]

 Score =  241 bits (616), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 113/172 (65%), Positives = 138/172 (80%), Gaps = 11/172 (6%)

Query: 12  AKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRV 71
           ++ NP++  +K++      +DLGNGS+V++  R+I  E SWK+F+YL+  IPW RPTIRV
Sbjct: 22  SEPNPNETAKKSE-----TIDLGNGSDVVFIQRLIPSEQSWKWFNYLDKHIPWTRPTIRV 76

Query: 72  FGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGS 131
           FG+S LQ      PRDTCYVA+ G+T+L YSGY+PH YSWDD+PPLKDILD V K LPGS
Sbjct: 77  FGKSFLQ------PRDTCYVATSGLTELSYSGYQPHAYSWDDYPPLKDILDAVHKALPGS 130

Query: 132 RFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183
            FNSLLLNRYKGG+DYVGWHADDEKLYG TPEIAS+S GC+RDF+LK KPSK
Sbjct: 131 SFNSLLLNRYKGGDDYVGWHADDEKLYGPTPEIASLSLGCDRDFVLKKKPSK 182

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532818|ref|XP_003534967.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 3-like [Glycine max]

 Score =  239 bits (609), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 110/165 (66%), Positives = 132/165 (80%), Gaps = 6/165 (3%)

Query: 19  DDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQ 78
           ++  N+  +R  VDLGNGS+V+Y  R+I  + SWK+F YL+  IPW RPTIRVFG+S LQ
Sbjct: 11  EENPNETVKRETVDLGNGSDVVYIQRLIPSDQSWKWFHYLDKHIPWTRPTIRVFGKSFLQ 70

Query: 79  VACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLL 138
                 PRDTCYVA+ G+T+L YSGY+PH YSWDD+PPLKD+LD V K LPGS FNSLLL
Sbjct: 71  ------PRDTCYVATPGLTELTYSGYQPHAYSWDDYPPLKDMLDAVHKALPGSSFNSLLL 124

Query: 139 NRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183
           NRY GGNDYVGWH+DDEKLYG TPEIAS++FGC+RDF+LK KP K
Sbjct: 125 NRYNGGNDYVGWHSDDEKLYGPTPEIASLTFGCDRDFVLKKKPCK 169

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434054|ref|XP_004134811.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 3-like [Cucumis sativus] gi|449520163|ref|XP_004167103.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 3-like [Cucumis sativus]

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 118/189 (62%), Positives = 137/189 (72%), Gaps = 14/189 (7%)

Query: 1   MSLRFRA---KEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDY 57
           MSLRF+     E E K     D  K     R  +DLGNGSE++Y  + +  + +W +FD+
Sbjct: 1   MSLRFKEVTDSESETKIPRPFDLGK-----RQTLDLGNGSEILYISKFVSSDQAWTWFDF 55

Query: 58  LNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPL 117
           LN RIPW RPTI VFGRS LQ      PRDTCYVA+ G+T L YSGY+PH Y+WDDF PL
Sbjct: 56  LNQRIPWTRPTICVFGRSVLQ------PRDTCYVANPGLTTLTYSGYKPHAYTWDDFTPL 109

Query: 118 KDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLL 177
           KDILD V + LPGSRFNSLLLNRYKGGNDYVGWH+DDEK+Y    EIASVSFGCERDFLL
Sbjct: 110 KDILDAVHEALPGSRFNSLLLNRYKGGNDYVGWHSDDEKVYALNQEIASVSFGCERDFLL 169

Query: 178 KIKPSKSYQ 186
           K KP+K+ Q
Sbjct: 170 KKKPNKTSQ 178

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218197985|gb|EEC80412.1| hypothetical protein OsI_22576 [Oryza sativa Indica Group]

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 111/194 (57%), Positives = 135/194 (69%), Gaps = 16/194 (8%)

Query: 1   MSLRFRAKEKEAKANP----------DDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMED 50
           M+ R R +   A  NP            + +  +  +R V DLG GSEV++ PR +  E 
Sbjct: 2   MASRSRLRLAAAGENPIPHSKSGGEGGTERKPEEALRREVTDLGGGSEVVHVPRFVPREA 61

Query: 51  SWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYS 110
           +W +FDYL+ RIPW RPTIRVFGRS +Q      PRDTCYVA EG+T L YSG++PH +S
Sbjct: 62  AWGWFDYLDKRIPWTRPTIRVFGRSAVQ------PRDTCYVADEGLTDLRYSGHQPHAHS 115

Query: 111 WDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFG 170
           WD+FP LKDIL  V + LPGS FNSLLLNRYK G+DYV WHADDE LYG TPEIASV+ G
Sbjct: 116 WDEFPVLKDILKAVHEALPGSHFNSLLLNRYKTGSDYVSWHADDEPLYGPTPEIASVTLG 175

Query: 171 CERDFLLKIKPSKS 184
           CER+FLL+ KP+KS
Sbjct: 176 CEREFLLRKKPTKS 189

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|86361423|gb|ABC94593.1| oxidoreductase-like protein [Oryza sativa Indica Group]

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 111/194 (57%), Positives = 135/194 (69%), Gaps = 16/194 (8%)

Query: 1   MSLRFRAKEKEAKANP----------DDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMED 50
           M+ R R +   A  NP            + +  +  +R V DLG GSEV++ PR +  E 
Sbjct: 1   MASRSRLRLAAAGENPIPHSKSGGEGGTERKPEEALRREVTDLGGGSEVVHVPRFVPREA 60

Query: 51  SWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYS 110
           +W +FDYL+ RIPW RPTIRVFGRS +Q      PRDTCYVA EG+T L YSG++PH +S
Sbjct: 61  AWGWFDYLDKRIPWTRPTIRVFGRSAVQ------PRDTCYVADEGLTDLRYSGHQPHAHS 114

Query: 111 WDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFG 170
           WD+FP LKDIL  V + LPGS FNSLLLNRYK G+DYV WHADDE LYG TPEIASV+ G
Sbjct: 115 WDEFPVLKDILKAVHEALPGSHFNSLLLNRYKTGSDYVSWHADDEPLYGPTPEIASVTLG 174

Query: 171 CERDFLLKIKPSKS 184
           CER+FLL+ KP+KS
Sbjct: 175 CEREFLLRKKPTKS 188

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
TAIR|locus:2060430	314	ALKBH2 "homolog of E. coli alk	0.761	0.468	0.725	6.4e-60
UNIPROTKB|E2R042	259	ALKBH2 "Uncharacterized protei	0.502	0.374	0.405	2.2e-15
UNIPROTKB|Q9KKY9	202	VC_A0961 "Putative uncharacter	0.725	0.693	0.328	6.2e-14
TIGR_CMR|VC_A0961	202	VC_A0961 "hypothetical protein	0.725	0.693	0.328	6.2e-14
ASPGD|ASPL0000069236	335	AN7782 [Emericella nidulans (t	0.284	0.164	0.472	4.4e-13
UNIPROTKB|I3LAK2	259	ALKBH2 "Uncharacterized protei	0.518	0.386	0.384	2.5e-12
UNIPROTKB|F1N437	278	ALKBH2 "Alpha-ketoglutarate-de	0.502	0.348	0.396	3e-12
UNIPROTKB|Q58DM4	278	ALKBH2 "Alpha-ketoglutarate-de	0.502	0.348	0.396	3.9e-12
MGI|MGI:2141032	239	Alkbh2 "alkB, alkylation repai	0.502	0.405	0.405	3.9e-12
UNIPROTKB|E1C3L3	286	ALKBH3 "Uncharacterized protei	0.689	0.465	0.337	4.5e-12

TAIR|locus:2060430 ALKBH2 "homolog of E. coli alkB" [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 111/153 (72%), Positives = 125/153 (81%)

Query:    28 RMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRD 87
             R  +DLG+GS++IY  R +  + SW FFDYL+  IPW RPTIRVFGRSCLQ      PRD
Sbjct:    96 RKTIDLGHGSDLIYIQRFLPFQQSWTFFDYLDKHIPWTRPTIRVFGRSCLQ------PRD 149

Query:    88 TCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDY 147
             TCYVAS G+T L+YSGYRP  YSWDDFPPLK+ILD + KVLPGSRFNSLLLNRYKG +DY
Sbjct:   150 TCYVASSGLTALVYSGYRPTSYSWDDFPPLKEILDAIYKVLPGSRFNSLLLNRYKGASDY 209

Query:   148 VGWHADDEKLYGSTPEIASVSFGCERDFLLKIK 180
             V WHADDEK+YG TPEIASVSFGCERDF+LK K
Sbjct:   210 VAWHADDEKIYGPTPEIASVSFGCERDFVLKKK 242

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0006281 "DNA repair" evidence=IDA

GO:0035514 "DNA demethylase activity" evidence=IDA

UNIPROTKB|E2R042 ALKBH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 166 (63.5 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 41/101 (40%), Positives = 54/101 (53%)

Query:    83 STPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYK 142
             S PR      + G+T   +SG    P  W   P L+ + D V  V+ G  FN +L+NRYK
Sbjct:   105 SVPRKQATYGNAGLTYT-FSGLTLSPKPW--IPVLEHVRDRV-SVVTGETFNFVLVNRYK 160

Query:   143 GGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183
              G D++G H DDE+       IASVSFG  RDF  + K S+
Sbjct:   161 DGCDHIGEHRDDERELAPGSPIASVSFGACRDFFFRHKDSR 201

GO:0051747 "cytosine C-5 DNA demethylase activity" evidence=IEA

GO:0043734 "DNA-N1-methyladenine dioxygenase activity" evidence=IEA

GO:0035511 "oxidative DNA demethylation" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=IEA

UNIPROTKB|Q9KKY9 VC_A0961 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 50/152 (32%), Positives = 73/152 (48%)

Query:    41 YFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLI 100
             +FP+ +    + + F  +   + W + +IR+FG+S LQ      PR   +   +G     
Sbjct:    25 WFPQFLTPIQADQAFQQMLTHLDWQQKSIRLFGKSVLQ------PRLIAWYGEKGYR--- 75

Query:   101 YSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGS 160
             YSG      S   FPP    L    +    + FNS+L N Y+ G D +GWH D+E   GS
Sbjct:    76 YSGLS---LSAQPFPPPLLTLKTQCEQAAQAPFNSVLANLYRDGQDSMGWHQDNEPELGS 132

Query:   161 TPEIASVSFGCERDFLLKIKPSKSYQEELMMN 192
              P IAS+S G  R FLL+     + Q E  +N
Sbjct:   133 NPVIASLSLGESRRFLLRHHKDHALQVECELN 164

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_A0961 VC_A0961 "hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 50/152 (32%), Positives = 73/152 (48%)

Query:    41 YFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLI 100
             +FP+ +    + + F  +   + W + +IR+FG+S LQ      PR   +   +G     
Sbjct:    25 WFPQFLTPIQADQAFQQMLTHLDWQQKSIRLFGKSVLQ------PRLIAWYGEKGYR--- 75

Query:   101 YSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGS 160
             YSG      S   FPP    L    +    + FNS+L N Y+ G D +GWH D+E   GS
Sbjct:    76 YSGLS---LSAQPFPPPLLTLKTQCEQAAQAPFNSVLANLYRDGQDSMGWHQDNEPELGS 132

Query:   161 TPEIASVSFGCERDFLLKIKPSKSYQEELMMN 192
              P IAS+S G  R FLL+     + Q E  +N
Sbjct:   133 NPVIASLSLGESRRFLLRHHKDHALQVECELN 164

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000069236 AN7782 [Emericella nidulans (taxid:162425)]

 Score = 150 (57.9 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
 Identities = 26/55 (47%), Positives = 39/55 (70%)

Query:   130 GSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKS 184
             GS +N  L+N Y  G+D + +H+DDE+  G  P IAS+S G +RDFL++ KPS++
Sbjct:   187 GSSYNFCLVNYYATGDDSISYHSDDERFLGPNPSIASISLGAQRDFLMRHKPSQA 241

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|I3LAK2 ALKBH2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 165 (63.1 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 40/104 (38%), Positives = 55/104 (52%)

Query:    83 STPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYK 142
             + PR        G+T   +SG    P  W   P L+ + D V  ++ G  FN +L+NRYK
Sbjct:   105 NVPRKQATYGDAGLTYT-FSGLTLSPKPW--VPVLEHVRDRV-SLVTGQTFNFVLVNRYK 160

Query:   143 GGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQ 186
              G+D++G H DDE+       IASVSFG  RDF  + K S+  Q
Sbjct:   161 DGHDHIGEHRDDERELAPGSPIASVSFGACRDFFFRHKDSRGKQ 204

GO:0051747 "cytosine C-5 DNA demethylase activity" evidence=IEA

GO:0043734 "DNA-N1-methyladenine dioxygenase activity" evidence=IEA

GO:0035511 "oxidative DNA demethylation" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=IEA

UNIPROTKB|F1N437 ALKBH2 "Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2" [Bos taurus (taxid:9913)]

 Score = 166 (63.5 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 40/101 (39%), Positives = 54/101 (53%)

Query:    83 STPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYK 142
             S PR        G+T   +SG    P  W   P L+ + D V  ++ G  FN +L+NRYK
Sbjct:   106 SVPRKQATYGDTGLTYT-FSGLTLSPKPW--IPVLERVRDRV-SLVTGQTFNFVLINRYK 161

Query:   143 GGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183
              G D++G H DDE+       IASVSFG  RDF+ + K S+
Sbjct:   162 DGQDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSR 202

GO:0051747 "cytosine C-5 DNA demethylase activity" evidence=IEA

GO:0043734 "DNA-N1-methyladenine dioxygenase activity" evidence=IEA

GO:0035511 "oxidative DNA demethylation" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=IEA

UNIPROTKB|Q58DM4 ALKBH2 "Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2" [Bos taurus (taxid:9913)]

 Score = 165 (63.1 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 40/101 (39%), Positives = 54/101 (53%)

Query:    83 STPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYK 142
             S PR        G+T   +SG    P  W   P L+ + D V  ++ G  FN +L+NRYK
Sbjct:   106 SVPRKQATYGDTGLTYT-FSGLTLSPKPW--IPVLERVRDRV-SLVTGQTFNFVLINRYK 161

Query:   143 GGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183
              G D++G H DDE+       IASVSFG  RDF+ + K S+
Sbjct:   162 DGQDHIGEHRDDERELALGSPIASVSFGACRDFVFRHKDSR 202

GO:0008198 "ferrous iron binding" evidence=ISS

GO:0051747 "cytosine C-5 DNA demethylase activity" evidence=ISS

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=ISS

GO:0043734 "DNA-N1-methyladenine dioxygenase activity" evidence=ISS

GO:0035511 "oxidative DNA demethylation" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

MGI|MGI:2141032 Alkbh2 "alkB, alkylation repair homolog 2 (E. coli)" [Mus musculus (taxid:10090)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 41/101 (40%), Positives = 54/101 (53%)

Query:    83 STPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYK 142
             S PR        G+T   +SG    P  W   P L+ + D V +V  G  FN +L+NRYK
Sbjct:    85 SVPRKQATYGDAGLTYT-FSGLTLTPKPW--VPVLERVRDRVCEVT-GQTFNFVLVNRYK 140

Query:   143 GGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183
              G D++G H DDE+       IASVSFG  RDF+ + K S+
Sbjct:   141 DGCDHIGEHRDDERELAPGSPIASVSFGACRDFIFRHKDSR 181

GO:0004519 "endonuclease activity" evidence=IDA

GO:0004527 "exonuclease activity" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IDA

GO:0035511 "oxidative DNA demethylation" evidence=ISO

GO:0043734 "DNA-N1-methyladenine dioxygenase activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051747 "cytosine C-5 DNA demethylase activity" evidence=ISO;IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0080111 "DNA demethylation" evidence=IDA

UNIPROTKB|E1C3L3 ALKBH3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 4.5e-12, P = 4.5e-12
 Identities = 50/148 (33%), Positives = 68/148 (45%)

Query:    37 SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGV 96
             S +   P  I  E +   F+ L   +PW +   R   R   Q      PR T +    G 
Sbjct:    88 SRIHLVPGFIDSEQADWMFEQLLQDVPWGQ---RTHTR---QEGSFEEPRLTSWY---GE 138

Query:    97 TQLIYSGY--RPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADD 154
                 YS    +P+P +W    P+  +L   ++   G  FNSLL N Y+   D V WH+DD
Sbjct:   139 LPYTYSRITMQPNP-NWH---PVLTMLKEQIEEFTGHTFNSLLCNLYRNEKDSVDWHSDD 194

Query:   155 EKLYGSTPEIASVSFGCERDFLLKIKPS 182
             E   G  P IAS+SFG  R F ++ KPS
Sbjct:   195 EPSLGKNPVIASLSFGATRTFEMRKKPS 222

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0035552 "oxidative single-stranded DNA demethylation" evidence=IEA

GO:0043734 "DNA-N1-methyladenine dioxygenase activity" evidence=IEA

GO:0051747 "cytosine C-5 DNA demethylase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.11	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	193
pfam13532	190	pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su	8e-20
COG3145	194	COG3145, AlkB, Alkylated DNA repair protein [DNA r	1e-06

>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily

 Score = 82.3 bits (204), Expect = 8e-20
 Identities = 31/149 (20%), Positives = 49/149 (32%), Gaps = 22/149 (14%)

Query: 39  VIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGR------SCLQVACISTPRDTCYVA 92
           ++  P  +  E+       L    PW +P             +C  +  ++      Y  
Sbjct: 2   LVLLPGFLSAEEQAALLRELLAEAPWRQPMTPGGKPMSVRMTNCGPLGWVTDGP--GY-- 57

Query: 93  SEGVTQLIYSGYRPHPYSWDDFPP-LKDILDIVLK--VLPGSRFNSLLLNRYKGGNDYVG 149
                   YSG       W  FP  L  + + +      PG   N+ L+N Y+ G   +G
Sbjct: 58  -------RYSGTPVTGEPWPPFPAVLLQLAERLAAAAGPPGFEPNACLVNFYRPG-ARMG 109

Query: 150 WHADDEKLYGSTPEIASVSFGCERDFLLK 178
            H D ++       I SVS G    F   
Sbjct: 110 LHQDKDE-LDFGAPIVSVSLGDPALFRFG 137

Length = 190

>gnl|CDD|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair]

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 16/119 (13%)

Query: 63  PWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILD 122
           PW RP    +G+       +S PR   +V         YS   P        PPL  +  
Sbjct: 43  PWFRPRRTPYGKP------MSVPRLLGWV--TDRRGYRYSLRSPLTGKPW--PPLLALFH 92

Query: 123 IVLKVLPGSRFNSL---LLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLK 178
            +     G  F      L+NRY+ G   +GWH D ++     P +AS+S G    F L+
Sbjct: 93  DLFGAA-GYPFEGPEAVLVNRYRPG-ASIGWHQDKDEEDDRPP-VASLSLGAPCIFRLR 148

Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
TIGR00568	169	alkb DNA alkylation damage repair protein AlkB. Pr	99.96
PRK15401	213	alpha-ketoglutarate-dependent dioxygenase AlkB; Pr	99.96
PF13532	194	2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily;	99.91
COG3145	194	AlkB Alkylated DNA repair protein [DNA replication	99.89
KOG3200	224	consensus Uncharacterized conserved protein [Funct	98.93
PF12933	253	FTO_NTD: FTO catalytic domain; InterPro: IPR024367	97.84
KOG4176	323	consensus Uncharacterized conserved protein [Funct	97.24
KOG2731	378	consensus DNA alkylation damage repair protein [RN	88.46
KOG3959	306	consensus 2-Oxoglutarate- and iron-dependent dioxy	86.04
PRK05467	226	Fe(II)-dependent oxygenase superfamily protein; Pr	82.92

>TIGR00568 alkb DNA alkylation damage repair protein AlkB

Probab=99.96  E-value=4.1e-29  Score=201.06  Aligned_cols=138  Identities=20%  Similarity=0.306  Sum_probs=114.7

Q ss_pred             CCCCCHHHHHHHHHHHHh---cCCCCCceEeecCcEEEeeeeecCCeeeE----EEcCCCCcceeccCCCC-CCCCCCCC
Q 029450           43 PRIIKMEDSWKFFDYLNN---RIPWNRPTIRVFGRSCLQVACISTPRDTC----YVASEGVTQLIYSGYRP-HPYSWDDF  114 (193)
Q Consensus        43 ~~fl~~~~a~~l~~~L~~---~~~w~~~~~~~~Gk~~~~~~~~~~pR~~~----wy~~~~~~~Y~Ysg~~~-~~~~w~~~  114 (193)
                      .+++...++..|.+++++   +.+|++ .++++||++.+      ||+++    |+++ +. .|.|++..+ ...+||++
T Consensus         2 ~~~~~~~~~~~l~~~~~~~~~~~~w~~-~~~~~gk~~~~------pr~~~~~l~W~~~-g~-~Y~ys~~~~~~~~~~p~~   72 (169)
T TIGR00568         2 KRYFAFNAQEQLIRDINDVASQDPFRQ-YVTPGGYTMSV------AMTNLGKLGWTTH-GQ-GYLYSPKDPQTNKPWPAM   72 (169)
T ss_pred             CCccChHHHHHHHHHHHHHhhcCCCcC-eEecCCeEeee------hhhhcccceEEcC-CC-cccCCCcccCCCCCCCCC
Confidence            568888888889988876   468999 48999999999      99986    9999 56 599999876 45667655


Q ss_pred             c-hHHHHHHHHHhhcCCC---CCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEeecCCCCceeEEe
Q 029450          115 P-PLKDILDIVLKVLPGS---RFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQEELM  190 (193)
Q Consensus       115 P-~L~~l~~~~~e~~~g~---~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~~~~~~~~~~~  190 (193)
                      | .|..+.+++ ++.+|.   .||+||||+|++| ++||||+|+ .+++.+++|||||||++|.|.|+++..+.+..++.
T Consensus        73 P~~L~~L~~~v-~~~~g~~~~~~n~~LvN~Y~~G-d~mg~H~D~-~e~~~~~pI~SvSLG~~r~F~~~~~~~~~~~~~l~  149 (169)
T TIGR00568        73 PQDLGDLCERV-ATAAGFPDFQPDACLVNRYAPG-ATLSLHQDR-DEPDLRAPLLSVSLGLPAIFLIGGLKRNDPPKRLR  149 (169)
T ss_pred             CHHHHHHHHHH-HHHhCCCCCCCCEEEEEeecCC-Ccccccccc-ccccCCCCEEEEeCCCCEEEEecCCcCCCceEEEE
Confidence            5 577776654 445664   8999999999998 999999994 67788999999999999999999988777777777


Q ss_pred             cc
Q 029450          191 MN  192 (193)
Q Consensus       191 l~  192 (193)
                      |.
T Consensus       150 L~  151 (169)
T TIGR00568       150 LH  151 (169)
T ss_pred             eC
Confidence            63

Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).

>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional

Probab=99.96  E-value=3.5e-28  Score=201.72  Aligned_cols=145  Identities=17%  Similarity=0.254  Sum_probs=118.7

Q ss_pred             EeCCCCceEEEeCCCCCHHHHHHHHHHHHh---cCCCCCceEeecCcEEEeeeeecCCeee-----EEEcCCCCcceecc
Q 029450           31 VDLGNGSEVIYFPRIIKMEDSWKFFDYLNN---RIPWNRPTIRVFGRSCLQVACISTPRDT-----CYVASEGVTQLIYS  102 (193)
Q Consensus        31 ~~l~~g~~v~~~~~fl~~~~a~~l~~~L~~---~~~w~~~~~~~~Gk~~~~~~~~~~pR~~-----~wy~~~~~~~Y~Ys  102 (193)
                      ..|.+|  +.++++|. .+++++|++.|++   +++|++.  .++|+..++      +|++     +||++..  .|+|+
T Consensus        14 ~~~~~g--~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~~--~~~gg~~ms------v~mt~~G~~~W~~d~~--~YrYs   80 (213)
T PRK15401         14 EPLAPG--AVLLRGFA-LAAAEALLAAIEAVAAQAPFRHM--VTPGGYTMS------VAMTNCGALGWVTDRR--GYRYS   80 (213)
T ss_pred             eecCCC--cEEeCCCC-HHHHHHHHHHHHHHHhcCCccce--ecCCCCcce------eEEeccccceEecCCC--CcccC
Confidence            447666  88999995 8899999999998   8999884  467877888      8999     9999985  59999


Q ss_pred             CCC-CCCCCCCCCch-HHHHHHHHHhhcCC---CCCceEEEeeecCCCCCceecccC-CCCcCCCCcEEEEEcCCeeeeE
Q 029450          103 GYR-PHPYSWDDFPP-LKDILDIVLKVLPG---SRFNSLLLNRYKGGNDYVGWHADD-EKLYGSTPEIASVSFGCERDFL  176 (193)
Q Consensus       103 g~~-~~~~~w~~~P~-L~~l~~~~~e~~~g---~~fn~~LvN~Y~dG~d~ig~HsD~-e~~lg~~~~IaSlSLGa~R~F~  176 (193)
                      +.. ..+.+||++|. |.++.+++ +...+   ..||+||||+|++|+ +||||+|+ |..  .+++|||||||++|.|+
T Consensus        81 ~~~~~~~~pwp~~P~~l~~L~~~~-~~~~~~~~~~p~a~LvN~Y~~G~-~mg~H~D~~E~~--~~~pI~SvSLG~~~~F~  156 (213)
T PRK15401         81 PIDPLTGKPWPAMPASFLALAQRA-AAAAGFPGFQPDACLINRYAPGA-KLSLHQDKDERD--FRAPIVSVSLGLPAVFQ  156 (213)
T ss_pred             CcCCCCCCCCCCchHHHHHHHHHH-HHHcCCCCCCCCEEEEEeccCcC-ccccccCCCccc--CCCCEEEEeCCCCeEEE
Confidence            986 57899998775 67766654 33344   489999999999985 99999996 443  56899999999999999


Q ss_pred             EeecCCCCceeEEecc
Q 029450          177 LKIKPSKSYQEELMMN  192 (193)
Q Consensus       177 ~r~~~~~~~~~~~~l~  192 (193)
                      |++...+....++.|.
T Consensus       157 ~~~~~~~~~~~~l~L~  172 (213)
T PRK15401        157 FGGLKRSDPLQRILLE  172 (213)
T ss_pred             ecccCCCCceEEEEeC
Confidence            9987777777777764

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A

Probab=99.91  E-value=8.7e-24  Score=171.00  Aligned_cols=142  Identities=31%  Similarity=0.563  Sum_probs=101.6

Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCceEeecCcEEEeeeeecCCee----eEEEcCCCCcceeccCC-CCCCCCCCC
Q 029450           39 VIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRD----TCYVASEGVTQLIYSGY-RPHPYSWDD  113 (193)
Q Consensus        39 v~~~~~fl~~~~a~~l~~~L~~~~~w~~~~~~~~Gk~~~~~~~~~~pR~----~~wy~~~~~~~Y~Ysg~-~~~~~~w~~  113 (193)
                      +.|+++||+.+++.+|++.|.+..+|.+.++.. ++.+..      +|.    ..|++...  .|.|++. .....+|++
T Consensus         2 ~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~--~y~y~~~~~~~~~~~~~   72 (194)
T PF13532_consen    2 LYYIPNFLSEEEAAELLNELRESAPFRQPTYPM-GKVYSL------PRKLCGGLSWVGDGP--SYRYSGKRPVRSKPWPP   72 (194)
T ss_dssp             EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCC-CCECCE------CCE-SSEEEEEECT----CCCTCC-EECCCEBSC
T ss_pred             EEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcC-CCEEcc------ceecceeeEEECCCC--CeEcCCccccCCCCCCC
Confidence            889999999999999999999999998887665 776655      544    57887653  5999987 556677776


Q ss_pred             Cch-HHHHHHHHHhhc---CCCCCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEeecCCCCceeEE
Q 029450          114 FPP-LKDILDIVLKVL---PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQEEL  189 (193)
Q Consensus       114 ~P~-L~~l~~~~~e~~---~g~~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~~~~~~~~~~  189 (193)
                      +|. |.++++++.+..   .++.||+||||+|++|+ +|++|+|++ .++.+++|||||||++|.|.|+++........+
T Consensus        73 ~p~~l~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~-~i~~H~D~~-~~~~~~~I~slSLG~~~~~~f~~~~~~~~~~~~  150 (194)
T PF13532_consen   73 FPEWLSRLLERLVEATGIPPGWRPNQCLINYYRDGS-GIGPHSDDE-EYGFGPPIASLSLGSSRVFRFRNKSDDDEPIEV  150 (194)
T ss_dssp             CHHHHHHHHHHHHHHHT-SHSS--SEEEEEEESSTT--EEEE---T-TC-CCSEEEEEEEES-EEEEEEECGGTS-EEEE
T ss_pred             ccHHHHHHHHHHHHHhccccCCCCCEEEEEecCCCC-CcCCCCCcc-cccCCCcEEEEEEccCceEEEeeccCCCccEEE
Confidence            664 677767664422   36889999999999986 999999999 447889999999999999999988766666666


Q ss_pred             ec
Q 029450          190 MM  191 (193)
Q Consensus       190 ~l  191 (193)
                      .|
T Consensus       151 ~L  152 (194)
T PF13532_consen  151 PL  152 (194)
T ss_dssp             EE
T ss_pred             Ec
Confidence            55

...

>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]

Probab=99.89  E-value=1.6e-22  Score=165.41  Aligned_cols=146  Identities=25%  Similarity=0.430  Sum_probs=109.2

Q ss_pred             EEeCCCCceEEEeCCCC--CHHHHHHHHHHHHhcCCCCCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceeccCCCCC
Q 029450           30 VVDLGNGSEVIYFPRII--KMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPH  107 (193)
Q Consensus        30 ~~~l~~g~~v~~~~~fl--~~~~a~~l~~~L~~~~~w~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ysg~~~~  107 (193)
                      ...+++|  +.+.++|+  .+.+..+.+..+..+.||.+..++++||.+.+      +|..+|+++ .. .|.|++....
T Consensus        10 ~~~~~~G--~~~~~~~~~~~~~~l~~~l~~~~~~~P~~~~~~~~~g~~~sV------~r~~~W~~d-~~-gy~y~~~~p~   79 (194)
T COG3145          10 RRQLAPG--AVILPGFLLLTQGALVAALLFLLSQAPWFRPRRTPYGKPMSV------PRLLGWVTD-RR-GYRYSLRSPL   79 (194)
T ss_pred             cccCCCC--eEEEecccccchHHHHHHHHHhcccCcccceeecCCCcEeee------eeccceecc-cc-cccccccccC
Confidence            3446666  56666665  33333345556667899999999999999999      999999999 44 5999998765


Q ss_pred             C-CCCCCCchHHHHHHHHHhhcCCCCCce---EEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEeecCCC
Q 029450          108 P-YSWDDFPPLKDILDIVLKVLPGSRFNS---LLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK  183 (193)
Q Consensus       108 ~-~~w~~~P~L~~l~~~~~e~~~g~~fn~---~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~~~~  183 (193)
                      + .+||..|.+.   ..+.. ..|..++.   ||+|+|++| |+||||+|.+..... ++|||||||++|.|+|+++...
T Consensus        80 ~~~p~p~l~~~~---~~~~~-~~g~~~~~~ea~Lvn~Y~pG-d~ig~HqD~~e~~~~-~~v~slSLg~~~~F~~~~~~r~  153 (194)
T COG3145          80 TGKPWPPLLALF---HDLFG-AAGYPFEGPEAVLVNRYRPG-ASIGWHQDKDEEDDR-PPVASLSLGAPCIFRLRGRRRR  153 (194)
T ss_pred             CCCCCCccHHHH---HHHHH-HhcCCCCChhheeEEeccCC-CccccccccccccCC-CceEEEecCCCeEEEeccccCC
Confidence            4 5675333332   22222 35655555   999999998 999999999887655 8999999999999999998877


Q ss_pred             CceeEEec
Q 029450          184 SYQEELMM  191 (193)
Q Consensus       184 ~~~~~~~l  191 (193)
                      ....++.|
T Consensus       154 ~~~~~~~L  161 (194)
T COG3145         154 GPGLRLRL  161 (194)
T ss_pred             CCceeEEe
Confidence            77777765

>KOG3200 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.93  E-value=5.5e-09  Score=84.31  Aligned_cols=114  Identities=23%  Similarity=0.299  Sum_probs=84.9

Q ss_pred             eEEEeCCCCCHHHHHHHHHHHHhc--CCCCCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceeccCCCCCCCCCCCCc
Q 029450           38 EVIYFPRIIKMEDSWKFFDYLNNR--IPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFP  115 (193)
Q Consensus        38 ~v~~~~~fl~~~~a~~l~~~L~~~--~~w~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~~~w~~~P  115 (193)
                      .+.|+|+|++.+|...++.++...  -.|++-               .|.|++.|-|-.+.     .|  +-|...|  |
T Consensus        13 t~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L---------------~NRRLqNyGGvvh~-----~g--lipeelP--~   68 (224)
T KOG3200|consen   13 TMIYIPNFITEEEENLYLSHIENAPQPKWRVL---------------ANRRLQNYGGVVHK-----TG--LIPEELP--P   68 (224)
T ss_pred             eEEEcCCccChHHHHHHHHHHhcCCCchhHHH---------------HhhhhhhcCCcccc-----CC--cCccccC--H
Confidence            689999999999999888888643  225332               23677766543221     13  2345566  6


Q ss_pred             hHHHHHHHHHh-hcCCCCCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEee
Q 029450          116 PLKDILDIVLK-VLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKI  179 (193)
Q Consensus       116 ~L~~l~~~~~e-~~~g~~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~  179 (193)
                      ||..+.++++. ...+...|+||||.|..| .+|.-|.|....   .|+|+++|||+...+.|-.
T Consensus        69 wLq~~v~kinnlglF~s~~NHVLVNeY~pg-qGImPHtDGPaf---~piVstiSlGsh~vldf~~  129 (224)
T KOG3200|consen   69 WLQYYVDKINNLGLFKSPANHVLVNEYLPG-QGIMPHTDGPAF---HPIVSTISLGSHTVLDFYD  129 (224)
T ss_pred             HHHHHHHHhhcccccCCCcceeEeecccCC-CCcCcCCCCCcc---cceEEEEecCCceEEeccc
Confidence            89998887753 134468999999999996 699999999886   6899999999999999854

>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family

Probab=97.84  E-value=5.8e-05  Score=63.88  Aligned_cols=117  Identities=22%  Similarity=0.359  Sum_probs=61.4

Q ss_pred             CCCHH---HHHHHHHHHHhcCCCCCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceeccCCCCCCCCCCCC-------
Q 029450           45 IIKME---DSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDF-------  114 (193)
Q Consensus        45 fl~~~---~a~~l~~~L~~~~~w~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~~~w~~~-------  114 (193)
                      -||.+   +..+-|..|++.=-|.++.+++-||....      +=.-...|++|. .|+|-+..+=+.||+.-       
T Consensus        22 ~lP~~lH~~vq~Af~tL~~~Gcf~~Dlvr~~~k~~~T------~VsR~L~G~pG~-TYkYl~~RLFa~PW~~~~~~~~~~   94 (253)
T PF12933_consen   22 SLPEELHEEVQEAFDTLRKHGCFFRDLVRIGGKDSFT------PVSRTLLGEPGC-TYKYLNTRLFAVPWPDEGSEIKYQ   94 (253)
T ss_dssp             GS-HHHHHHHHHHHHHHHHTT--B--EE-GGG--EE-------SSEEEEEESTTB-EEEETTEEEE-EE-----------
T ss_pred             cCCHHHHHHHHHHHHHHHhcCchHHHHHhhCCccccc------eeehhhcCCCCc-eeEecceeEEeccCCCCCcccccC
Confidence            34544   45667888888778999999998886544      555578999999 59999988778899741       


Q ss_pred             -chHHHHHHHH---Hh-----------h----------cCCCCCceEEEeeecC----------------CCCCceeccc
Q 029450          115 -PPLKDILDIV---LK-----------V----------LPGSRFNSLLLNRYKG----------------GNDYVGWHAD  153 (193)
Q Consensus       115 -P~L~~l~~~~---~e-----------~----------~~g~~fn~~LvN~Y~d----------------G~d~ig~HsD  153 (193)
                       |.+...++.+   ++           +          .....||.+|||+++.                |.-+||||+|
T Consensus        95 ~~~i~~a~~al~~LN~~L~~~~~~~l~~~~~~~~~~~~~~~~~fNvTLlN~MdP~~~~~~~LK~Ep~fgmGKmaVsWH~D  174 (253)
T PF12933_consen   95 SPEIRSACKALGKLNDYLCSRAVQALEGRRLARVEEDEVGSCEFNVTLLNYMDPSSQAMPDLKEEPYFGMGKMAVSWHHD  174 (253)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------EEEEEEE-S--S-SSS--B-SSS---BEEEEEE--
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccceeeehhhhhccCcccccccccccccccCCcceeeeeccc
Confidence             2222221111   10           0          0123699999999997                5668999999


Q ss_pred             CCCCcCCCCcEEEEEcC
Q 029450          154 DEKLYGSTPEIASVSFG  170 (193)
Q Consensus       154 ~e~~lg~~~~IaSlSLG  170 (193)
                      ...  ...++||..|.-
T Consensus       175 enL--~~~StVAVY~~s  189 (253)
T PF12933_consen  175 ENL--VERSTVAVYSYS  189 (253)
T ss_dssp             -SB---TT--EEEEEEE
T ss_pred             ccc--ccccceEEEEec
Confidence            764  478899988753

This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.

>KOG4176 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.24  E-value=0.0015  Score=57.74  Aligned_cols=65  Identities=23%  Similarity=0.244  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHhh-cCCCCCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEeecCCCC
Q 029450          116 PLKDILDIVLKV-LPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKS  184 (193)
Q Consensus       116 ~L~~l~~~~~e~-~~g~~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~~~~~  184 (193)
                      .+..++++++.. .+...+|+|.||.|..| ++|--|-|-.. |  ..+|+||||=.++++.|++.-...
T Consensus       191 ~~~~ii~rlv~~~~ip~~pd~~~iN~Ye~G-~~i~ph~~~~~-F--~~Pi~slS~lSe~~m~Fg~~~~~~  256 (323)
T KOG4176|consen  191 LFKSIIDRLVSWRVIPERPDQCTINFYEPG-DGIPPHIDHSA-F--LDPISSLSFLSECTMEFGHGLLSD  256 (323)
T ss_pred             HHHHHHHHhhhhccCCCCCCeeEEEeeCCC-CCCCCCCChHH-h--cCceEEEEeecceeEEeccccccc
Confidence            456666655442 22336999999999996 79999995544 3  347999999999999999865443

>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]

Probab=88.46  E-value=0.63  Score=41.79  Aligned_cols=56  Identities=20%  Similarity=0.144  Sum_probs=42.2

Q ss_pred             CceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEeecCCCCceeEEe
Q 029450          133 FNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQEELM  190 (193)
Q Consensus       133 fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~~~~~~~~~~~  190 (193)
                      ....|+|||.- ++.++.|-|. .+++...++.+.|||.++.|.+.-....+...-++
T Consensus       216 ~~Gli~nYlsi-~~tl~ih~d~-reld~~~pf~s~s~g~~ai~lLg~m~l~e~p~p~~  271 (378)
T KOG2731|consen  216 RPGLIKNYLSI-DDTLGIHLDC-RELDLSKPFYSPSLGQGAILLLGMMCLGENPDPMT  271 (378)
T ss_pred             cCcceeeeccc-CcEEEEEeeh-hhcccCCccccccccccceeeecccccCCCCCccc
Confidence            34579999999 5899999986 22355566999999999999997766555444333

>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]

Probab=86.04  E-value=1.1  Score=38.43  Aligned_cols=114  Identities=15%  Similarity=0.318  Sum_probs=66.5

Q ss_pred             EEEeCCCCceEEEeCCCCCHHHHHHHHHHHHhcCCCCCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceeccCCCCCC
Q 029450           29 MVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHP  108 (193)
Q Consensus        29 ~~~~l~~g~~v~~~~~fl~~~~a~~l~~~L~~~~~w~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~  108 (193)
                      .-+.++   .+.++.+||+.+|...|+..| +.+||.+-+   -|+           |.+ =||..    -.+.......
T Consensus        67 ~~~p~p---G~~lie~Fls~~Eea~l~~~~-D~~pW~~SQ---SGR-----------RKQ-dyGPK----vNFkk~Klkt  123 (306)
T KOG3959|consen   67 GSIPIP---GLTLIENFLSESEEAKLLNMI-DTVPWAQSQ---SGR-----------RKQ-DYGPK----VNFKKKKLKT  123 (306)
T ss_pred             CccccC---CeeehhhhhccchHhHHHHHh-ccCchhhhc---ccc-----------ccc-ccCCc----cchhhhhhcc
Confidence            345553   399999999999998888776 789997664   132           222 24321    1122222222


Q ss_pred             CCCCCCchHHH-HHHHHHhhcC---C-CCCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEE
Q 029450          109 YSWDDFPPLKD-ILDIVLKVLP---G-SRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVS  168 (193)
Q Consensus       109 ~~w~~~P~L~~-l~~~~~e~~~---g-~~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlS  168 (193)
                      ..|--+|...+ +++++ +...   | .+|..|=+.|=..-++.|..|.||-=..|..  ++++.
T Consensus       124 ~~F~G~P~~~~~v~rrm-~~yp~l~gfqp~EqCnLeYep~kgsaIdpH~DD~WiWGeR--lv~~n  185 (306)
T KOG3959|consen  124 DTFVGMPEYADMVLRRM-SEYPVLKGFQPFEQCNLEYEPVKGSAIDPHQDDMWIWGER--LVRSN  185 (306)
T ss_pred             CcccCCchHHHHHHHHh-hccchhhccCcHHHcCcccccccCCccCccccchhhhhhh--eeehh
Confidence            22333344433 33333 2222   2 4577887777666678999999997665543  44544

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional

Probab=82.92  E-value=13  Score=31.39  Aligned_cols=29  Identities=14%  Similarity=0.375  Sum_probs=23.1

Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCce
Q 029450           39 VIYFPRIIKMEDSWKFFDYLNNRIPWNRPT   68 (193)
Q Consensus        39 v~~~~~fl~~~~a~~l~~~L~~~~~w~~~~   68 (193)
                      +..+|++|+++|+..+.+.|.+ ..|....
T Consensus         2 i~~I~~vLs~eec~~~~~~le~-~~~~dg~   30 (226)
T PRK05467          2 LLHIPDVLSPEEVAQIRELLDA-AEWVDGR   30 (226)
T ss_pred             eeeecccCCHHHHHHHHHHHHh-cCCccCC
Confidence            4678999999999999988844 6786443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	193
3rzm_A	206	Duplex Interrogation By A Direct Dna Repair Protein		4e-11
3rzl_A	208	Duplex Interrogation By A Direct Dna Repair Protein		4e-11
3s57_A	204	Abh2 Cross-Linked With Undamaged Dsdna-1 Containing		4e-11
3rzh_A	209	Duplex Interrogation By A Direct Dna Repair Protein		4e-11
3btx_A	204	X-Ray Structure Of Human Abh2 Bound To Dsdna Throug		4e-11
3bty_A	203	Crystal Structure Of Human Abh2 Bound To Dsdna Cont		4e-11
3h8o_A	209	Structure Determination Of Dna Methylation Lesions		4e-11
3btz_A	202	Crystal Structure Of Human Abh2 Cross-Linked To Dsd		5e-11
3bu0_A	203	Crystal Structure Of Human Abh2 Cross-Linked To Dsd		5e-11
3rzg_A	209	Duplex Interrogation By A Direct Dna Repair Protein		5e-11
2iuw_A	238	Crystal Structure Of Human Abh3 In Complex With Iro		2e-08

>pdb|3RZM|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The Search Of Damage Length = 206

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 69  IRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 128
           ++VFG+        S PR        G+T   +SG    P  W   P L+ I D V  V 
Sbjct: 45  VQVFGK------WHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGVT 95
Query: 129 PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183
            G  FN +L+NRYK G+D++  H DDE+       IASVSFG  RDF+ + K S+
Sbjct: 96  -GQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSR 149

>pdb|3RZL|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The Search Of Damage Length = 208

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 69  IRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 128
           ++VFG+        S PR        G+T   +SG    P  W   P L+ I D V  V 
Sbjct: 46  VQVFGK------WHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGVT 96
Query: 129 PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183
            G  FN +L+NRYK G+D++  H DDE+       IASVSFG  RDF+ + K S+
Sbjct: 97  -GQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSR 150

>pdb|3S57|A Chain A, Abh2 Cross-Linked With Undamaged Dsdna-1 Containing Cofactors Length = 204

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 69  IRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 128
           ++VFG+        S PR        G+T   +SG    P  W   P L+ I D V  V 
Sbjct: 45  VQVFGK------WHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGVT 95
Query: 129 PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183
            G  FN +L+NRYK G+D++  H DDE+       IASVSFG  RDF+ + K S+
Sbjct: 96  -GQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSR 149

>pdb|3RZH|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The Search Of Damage Length = 209

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 69  IRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 128
           ++VFG+        S PR        G+T   +SG    P  W   P L+ I D V  V 
Sbjct: 47  VQVFGK------WHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGVT 97
Query: 129 PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183
            G  FN +L+NRYK G+D++  H DDE+       IASVSFG  RDF+ + K S+
Sbjct: 98  -GQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSR 151

>pdb|3BTX|A Chain A, X-Ray Structure Of Human Abh2 Bound To Dsdna Through Active Site Cross-Linking Length = 204

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 69  IRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 128
           ++VFG+        S PR        G+T   +SG    P  W   P L+ I D V  V 
Sbjct: 45  VQVFGK------WHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGVT 95
Query: 129 PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183
            G  FN +L+NRYK G+D++G H DD +       IASVSFG  RDF+ + K S+
Sbjct: 96  -GQTFNFVLINRYKDGSDHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKDSR 149

>pdb|3BTY|A Chain A, Crystal Structure Of Human Abh2 Bound To Dsdna Containing 1mea Through Cross-Linking Away From Active Site Length = 203

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 69  IRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 128
           ++VFG+        S PR        G+T   +SG    P  W   P L+ I D V  V 
Sbjct: 44  VQVFGK------WHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGVT 94
Query: 129 PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183
            G  FN +L+NRYK G+D++  H DDE+       IASVSFG  RDF+ + K S+
Sbjct: 95  -GQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSR 148

>pdb|3H8O|A Chain A, Structure Determination Of Dna Methylation Lesions N1-mea And N3-mec In Duplex Dna Using A Cross-linked Host-guest System Length = 209

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 69  IRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 128
           ++VFG+        S PR        G+T   +SG    P  W   P L+ I D V  V 
Sbjct: 47  VQVFGK------WHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGVT 97
Query: 129 PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183
            G  FN +L+NRYK G+D++G H DD +       IASVSFG  RDF+ + K S+
Sbjct: 98  -GQTFNFVLINRYKDGSDHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKDSR 151

>pdb|3BTZ|A Chain A, Crystal Structure Of Human Abh2 Cross-Linked To Dsdna Length = 202

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 69  IRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 128
           ++VFG+        S PR        G+T   +SG    P  W   P L+ I D V  V 
Sbjct: 43  VQVFGK------WHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGVT 93
Query: 129 PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183
            G  FN +L+NRYK G+D++G H DD +       IASVSFG  RDF+ + K S+
Sbjct: 94  -GQTFNFVLINRYKDGSDHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKDSR 147

>pdb|3BU0|A Chain A, Crystal Structure Of Human Abh2 Cross-Linked To Dsdna With Cofactors Length = 203

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 69  IRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 128
           ++VFG+        S PR        G+T   +SG    P  W   P L+ I D V  V 
Sbjct: 44  VQVFGK------WHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGVT 94
Query: 129 PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183
            G  FN +L+NRYK G+D++G H DD +       IASVSFG  RDF+ + K S+
Sbjct: 95  -GQTFNFVLINRYKDGSDHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKDSR 148

>pdb|3RZG|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The Search Of Damage Length = 209

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 69  IRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 128
           ++VFG+        S PR        G+T   +SG    P  W   P L+ I D V  V 
Sbjct: 47  VQVFGK------WHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGVT 97
Query: 129 PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK 183
            G  FN +L+NRYK G+D++  H DDE+       IASVSFG  RDF+ + K S+
Sbjct: 98  -GQTFNFVLINRYKDGSDHICEHRDDERDLAPGSPIASVSFGASRDFVFRHKDSR 151

>pdb|2IUW|A Chain A, Crystal Structure Of Human Abh3 In Complex With Iron Ion And 2-Oxoglutarate Length = 238

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 19/149 (12%)
Query: 37  SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGV 96
           S V  +P  + ++++    + L   +PW + T         +      PR T +      
Sbjct: 40  SRVCLYPGFVDVKEADWILEQLCQDVPWKQRT------GIREDITYQQPRLTAWYG---- 89
Query: 97  TQLIYSGYR----PHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHA 152
            +L Y+  R    P+P+    + P+   L   ++   G  FNSL  N Y+   D V WH+
Sbjct: 90  -ELPYTYSRITMEPNPH----WHPVLRTLKNRIEENTGHTFNSLXCNLYRNEKDSVDWHS 144
Query: 153 DDEKLYGSTPEIASVSFGCERDFLLKIKP 181
           DDE   G  P IAS+SFG  R F ++ KP
Sbjct: 145 DDEPSLGRCPIIASLSFGATRTFEMRKKP 173
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
2iuw_A	238	Alkylated repair protein ALKB homolog 3; oxidoredu	1e-22
3s57_A	204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	2e-22
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	4e-11
3i3q_A	211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	2e-08

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Length = 238

 Score = 90.3 bits (223), Expect = 1e-22
 Identities = 41/185 (22%), Positives = 65/185 (35%), Gaps = 11/185 (5%)

Query: 2   SLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNR 61
                                 +    + +     S V  +P  + ++++    + L   
Sbjct: 5   HHHHHHSSGLVPRGSHMRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQD 64

Query: 62  IPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDIL 121
           +PW + T      +         PR T +          Y+  R        + P+   L
Sbjct: 65  VPWKQRTGIREDITYQ------QPRLTAWYGELP-----YTYSRITMEPNPHWHPVLRTL 113

Query: 122 DIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP 181
              ++   G  FNSLL N Y+   D V WH+DDE   G  P IAS+SFG  R F ++ KP
Sbjct: 114 KNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKP 173

Query: 182 SKSYQ 186
                
Sbjct: 174 PPEEN 178

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Length = 204

 Score = 88.7 bits (219), Expect = 2e-22
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 13/152 (8%)

Query: 38  EVIYFPRIIKMEDSWKFFDYLNNRIPW---NRPTIRVFGRSCLQVACISTPRDTCYVASE 94
               +  +    ++ + F  L   + +       ++VFG+        S PR        
Sbjct: 11  LDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWH------SVPRKQATYGDA 64

Query: 95  GVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADD 154
           G+T   +SG    P  W    P+ + +   +  + G  FN +L+NRYK G+D++  H DD
Sbjct: 65  GLTY-TFSGLTLSPKPW---IPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDD 120

Query: 155 EKLYGSTPEIASVSFGCERDFLLKIKPSKSYQ 186
           E+       IASVSFG  RDF+ + K S+   
Sbjct: 121 ERELAPGSPIASVSFGASRDFVFRHKDSRGKS 152

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345

 Score = 59.8 bits (144), Expect = 4e-11
 Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 17/154 (11%)

Query: 39  VIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQ 98
           ++    II  E+       L   + W   T     +  L+       R   +        
Sbjct: 113 LMVVEEIISSEEE----KMLLESVDWTEDTDNQNSQKSLK------HRRVKHFG--YEFH 160

Query: 99  LIYSGYRP-HPYSWDDFPPLKDILDIVLKV-LPGSRFNSLLLNRYKGGNDYVGWHADDEK 156
              +      P S       +  L+  L+      + + + +N+Y+ G   +  H D   
Sbjct: 161 YENNNVDKDKPLSGGLPDICESFLEKWLRKGYIKHKPDQMTINQYEPG-QGIPAHIDTHS 219

Query: 157 LYGSTPEIASVSFGCERDFLLKIKPSKSYQEELM 190
            +    EI S+S G E     K     +    L 
Sbjct: 220 AFE--DEIVSLSLGSEIVMDFKHPDGIAVPVMLP 251

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211

 Score = 51.2 bits (122), Expect = 2e-08
 Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 6/82 (7%)

Query: 101 YSGYRPHPYS-WDDFPP-LKDILDIVLKVL--PGSRFNSLLLNRYKGGNDYVGWHADDEK 156
           YS   P     W   P    ++          P  + ++ L+NRY  G         DE 
Sbjct: 68  YSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEP 127

Query: 157 LYGSTPEIASVSFGCERDFLLK 178
              +   I SVS G    F   
Sbjct: 128 DLRAP--IVSVSLGLPAIFQFG 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
3s57_A	204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	100.0
2iuw_A	238	Alkylated repair protein ALKB homolog 3; oxidoredu	100.0
3i3q_A	211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	99.94
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	99.92
3lfm_A	495	Protein FTO; FAT MASS and obesity associated (FTO)	99.55
2jig_A	224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	88.71
3dkq_A	243	PKHD-type hydroxylase SBAL_3634; putative oxygenas	84.75

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*

Probab=100.00  E-value=7e-36  Score=245.52  Aligned_cols=138  Identities=32%  Similarity=0.539  Sum_probs=125.2

Q ss_pred             CCceEEEeCCCCCHHHHHHHHHHHHhcCCC---CCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceeccCCCCCCCCC
Q 029450           35 NGSEVIYFPRIIKMEDSWKFFDYLNNRIPW---NRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSW  111 (193)
Q Consensus        35 ~g~~v~~~~~fl~~~~a~~l~~~L~~~~~w---~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~~~w  111 (193)
                      +| -..++++||+.++|+.||++|+++++|   ++++++||||.+.+      ||+++||++.+. .|+|+|..+.+.+|
T Consensus         9 ~~-~~~~~~~~l~~~~a~~l~~~l~~~~~w~~~~~~~~~~~gk~~~~------pR~~~wyg~~~~-~Y~Ysg~~~~~~pw   80 (204)
T 3s57_A            9 EG-LDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSV------PRKQATYGDAGL-TYTFSGLTLSPKPW   80 (204)
T ss_dssp             TT-EEEEEEECSCHHHHHHHHHHHHHHCCCCCGGGGEEEETTEEEEC------SSEEEEEECTTC-CEEETTEEECCEEC
T ss_pred             CC-ceEEecCcCCHHHHHHHHHHHHHhCCCCCcccceEEECCeEecc------CcEEEEECCCCC-CcccCCCcccCCCC
Confidence            45 355799999999999999999999999   78899999999998      999999999888 59999999999999


Q ss_pred             CCCchHHHHHHHHHhhcCCCCCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEeecCCC
Q 029450          112 DDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK  183 (193)
Q Consensus       112 ~~~P~L~~l~~~~~e~~~g~~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~~~~  183 (193)
                      |  |+|..+++.+ ++.+|..||+||||+|++|.|+||||+|++.+++.+++|||||||++|.|.|+++.++
T Consensus        81 p--~~L~~l~~~~-~~~~g~~~n~~LvN~Y~~G~d~i~~H~D~~~~~~~~~~IasvSLG~~~~f~~~~~~~~  149 (204)
T 3s57_A           81 I--PVLERIRDHV-SGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSR  149 (204)
T ss_dssp             C--HHHHHHHHHH-HHHHCCCCSEEEEEEESSTTCCEEEECCCCTTBCTTCCEEEEEEESCEEEEEEEGGGC
T ss_pred             C--HHHHHHHHHH-HHHhCCCCceeEEEEECCCCCcccceecChhhccCCCcEEEEECCCceEEEEEEcCCC
Confidence            8  6888887654 5568999999999999999889999999999999999999999999999999997644

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10

Probab=100.00  E-value=1.5e-32  Score=230.32  Aligned_cols=147  Identities=31%  Similarity=0.526  Sum_probs=127.8

Q ss_pred             hccccEEEeCCCC-ceEEEeCCCCCHHHHHHHHHHHHhcCCCCCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceecc
Q 029450           24 QKKQRMVVDLGNG-SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYS  102 (193)
Q Consensus        24 ~~~~~~~~~l~~g-~~v~~~~~fl~~~~a~~l~~~L~~~~~w~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ys  102 (193)
                      ++|..++..++.| +.+.|+++||+.+++++||+.|+++++|++....+||+.+.+      ||+++||++  . .|+|+
T Consensus        26 ~~g~~~~~~~p~~i~gl~~~~~fl~~~e~~~Ll~~l~~~~~w~~~~~~~~g~~~~~------~R~~~~~g~--~-~Y~Ys   96 (238)
T 2iuw_A           26 REGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQ------PRLTAWYGE--L-PYTYS   96 (238)
T ss_dssp             SSEEEEEECCSSSCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESSSCEEEC------SSEEEEEEC--C-CTTSC
T ss_pred             CCcceeeecCCCCCCcEEEECCCCCHHHHHHHHHHHHHhCCCccCceecCCccccc------CCeeEEcCC--C-ccccC
Confidence            3455666666664 479999999999999999999999999999999999999988      999999995  3 59999


Q ss_pred             CCCCCCC-CCCCCchHHHHHHHHHhhcCCCCCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEeecC
Q 029450          103 GYRPHPY-SWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKP  181 (193)
Q Consensus       103 g~~~~~~-~w~~~P~L~~l~~~~~e~~~g~~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~~  181 (193)
                      |....+. +||  |.|..+++++ ++.++..||+||||+|++|+|+|+||+|++..++++++|||||||++|.|.|+++.
T Consensus        97 ~~~~~~~p~wp--~~l~~l~~~~-~~~~g~~~n~~LvN~Y~~G~d~i~~H~D~~~~~~~~~~IaslSLG~~~~f~f~~~~  173 (238)
T 2iuw_A           97 RITMEPNPHWH--PVLRTLKNRI-EENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKP  173 (238)
T ss_dssp             HHHHCCBSSCC--HHHHHHHHHH-HHHHSCCCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECC
T ss_pred             CcccCCCCCCC--HHHHHHHHHH-HHHhCCCCCEEEEEEECCCCCceeCCcCChhhcCCCCcEEEEECCCCEEEEEeccC
Confidence            9877776 798  5787776654 44568899999999999998999999999999999999999999999999999976


Q ss_pred             C
Q 029450          182 S  182 (193)
Q Consensus       182 ~  182 (193)
                      .
T Consensus       174 ~  174 (238)
T 2iuw_A          174 P  174 (238)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...

Probab=99.94  E-value=9.3e-27  Score=192.22  Aligned_cols=144  Identities=19%  Similarity=0.294  Sum_probs=112.7

Q ss_pred             EeCCCCceEEEeCCCCCHHHHHHHHHHHHh---cCCCCCceEeecCcEEEeeeeecCCeee-----EEEcCCCCcceecc
Q 029450           31 VDLGNGSEVIYFPRIIKMEDSWKFFDYLNN---RIPWNRPTIRVFGRSCLQVACISTPRDT-----CYVASEGVTQLIYS  102 (193)
Q Consensus        31 ~~l~~g~~v~~~~~fl~~~~a~~l~~~L~~---~~~w~~~~~~~~Gk~~~~~~~~~~pR~~-----~wy~~~~~~~Y~Ys  102 (193)
                      ..|++|  +.++|+|+. +++++|++++++   +.|+++.  .+.|+..++      +|++     +||++..  .|+|+
T Consensus         3 ~~~~~g--~~~~~~~~~-~~~~~l~~~~~~~~~~~p~~~~--~~pgg~~~s------~~~~~~g~~~W~~d~~--~Y~Ys   69 (211)
T 3i3q_A            3 EPLAAG--AVILRRFAF-NAAEQLIRDINDVASQSPFRQM--VTPGGYTMS------VAMTNCGHLGWTTHRQ--GYLYS   69 (211)
T ss_dssp             CCCBTT--BEEETTTTT-TTHHHHHHHHHHHHHHSCCBCC--BCTTSCBCS------SEEEEESSBEEEEETT--EEEEE
T ss_pred             eecCCC--CEEECCcCh-HHHHHHHHHHHHHHhcCCCcee--EcCCCCcCc------hhhcccccceeecCCC--CcCcC
Confidence            346665  889999997 678899999864   3445444  345777778      8998     8999874  59999


Q ss_pred             CCC-CCCCCCCCCc-hHHHHHHHHHhhcCC---CCCceEEEeeecCCCCCceeccc-CCCCcCCCCcEEEEEcCCeeeeE
Q 029450          103 GYR-PHPYSWDDFP-PLKDILDIVLKVLPG---SRFNSLLLNRYKGGNDYVGWHAD-DEKLYGSTPEIASVSFGCERDFL  176 (193)
Q Consensus       103 g~~-~~~~~w~~~P-~L~~l~~~~~e~~~g---~~fn~~LvN~Y~dG~d~ig~HsD-~e~~lg~~~~IaSlSLGa~R~F~  176 (193)
                      |.. ..+.+|+++| +|..+++++.+ ..|   ..+|+||||+|++|+ +|+||+| +|..++  ++|||||||++|.|.
T Consensus        70 ~~~~~~~~pw~~~P~~L~~l~~~~~~-~~g~~~~~pn~~LvN~Y~~G~-~i~~H~D~~e~~~~--~pI~svSLG~~~~f~  145 (211)
T 3i3q_A           70 PIDPQTNKPWPAMPQSFHNLCQRAAT-AAGYPDFQPDACLINRYAPGA-KLSLHQDKDEPDLR--APIVSVSLGLPAIFQ  145 (211)
T ss_dssp             SBCTTTSSBCCCCCHHHHHHHHHHHH-HTTCTTCCCCEEEEEEECTTC-CEEEECCCCCSCTT--SCEEEEEEESCEEEE
T ss_pred             CCccCCCCCCCchHHHHHHHHHHHHH-hcCCCCcCCCEEEEEEEcCCC-CcccccCCCccccC--CCEEEEECCCCeEEE
Confidence            988 6788999877 47777765543 344   356999999999985 9999999 788776  569999999999999


Q ss_pred             EeecCCCCceeEEec
Q 029450          177 LKIKPSKSYQEELMM  191 (193)
Q Consensus       177 ~r~~~~~~~~~~~~l  191 (193)
                      |+++..+....++.|
T Consensus       146 f~~~~~~~~~~~i~L  160 (211)
T 3i3q_A          146 FGGLKRNDPLKRLLL  160 (211)
T ss_dssp             ECCSSTTSCCEEEEE
T ss_pred             EecccCCCceEEEEC
Confidence            999766555666655

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=99.92  E-value=5.8e-25  Score=193.23  Aligned_cols=142  Identities=18%  Similarity=0.221  Sum_probs=91.4

Q ss_pred             ccEEEeCCCCceEEEeCCCCCHHHHHHHHHHHHhcCCCCCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceeccCCCC
Q 029450           27 QRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRP  106 (193)
Q Consensus        27 ~~~~~~l~~g~~v~~~~~fl~~~~a~~l~~~L~~~~~w~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ysg~~~  106 (193)
                      ..++..|++|  +.|+|+||+.+|++    .|.++++|.+..+.|+|+.+.+      +|+++|||-    .|+|++..+
T Consensus       103 ~~~~~~lp~G--l~~~p~fis~~Ee~----~Ll~~i~w~~~~~~~~~~~~l~------~Rr~~~yG~----~Y~Ys~~~~  166 (345)
T 3tht_A          103 ELRPQALPPG--LMVVEEIISSEEEK----MLLESVDWTEDTDNQNSQKSLK------HRRVKHFGY----EFHYENNNV  166 (345)
T ss_dssp             EEECCSCCTT--EEEETTCSCHHHHH----HHHTTCC----------------------CEEECCC--------------
T ss_pred             ccccccCCCc--eEEEcCcCCHHHHH----HHHHhcccCCccccccCccccc------CceEEEECC----ccccccccc
Confidence            3445678877  99999999999987    4567889999999999999988      999999993    599998776


Q ss_pred             C-----CCCCCCCchHHHHHHHHHh-hcCCCCCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEeec
Q 029450          107 H-----PYSWDDFPPLKDILDIVLK-VLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIK  180 (193)
Q Consensus       107 ~-----~~~w~~~P~L~~l~~~~~e-~~~g~~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~  180 (193)
                      .     +.+||  ++|..+++++.+ ...+..||+||||+|++| ++|+||+|++..++  ++|||||||++|.|.|+++
T Consensus       167 ~~~~p~p~~~P--~~L~~l~~r~~~~~~~~~~~n~~lvN~Y~~G-~~I~~H~D~~~~~~--~~I~slSLG~~~~f~f~~~  241 (345)
T 3tht_A          167 DKDKPLSGGLP--DICESFLEKWLRKGYIKHKPDQMTINQYEPG-QGIPAHIDTHSAFE--DEIVSLSLGSEIVMDFKHP  241 (345)
T ss_dssp             --------CCC--HHHHHHHHHHHHHTSCSSCCSEEEEEEECTT-CCEEEECCCTTTBC--SCEEEEEESSCEEEEEECT
T ss_pred             ccCCCCCcCcC--HHHHHHHHHHHhcccCCCCCCEEEEEEecCC-CCEeeccCCchhcC--CeEEEEECCCceeEEEccC
Confidence            4     45576  478888776542 356789999999999997 59999999988776  7899999999999999986


Q ss_pred             CCCCceeEEec
Q 029450          181 PSKSYQEELMM  191 (193)
Q Consensus       181 ~~~~~~~~~~l  191 (193)
                      ..  ...++.|
T Consensus       242 ~~--~~~~l~L  250 (345)
T 3tht_A          242 DG--IAVPVML  250 (345)
T ss_dssp             TS--CEEEEEE
T ss_pred             CC--ceEEEEc
Confidence            53  2344443

>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens}

Probab=99.55  E-value=4.5e-15  Score=132.55  Aligned_cols=63  Identities=19%  Similarity=0.267  Sum_probs=57.3

Q ss_pred             CCCCHH---HHHHHHHHHHhcCCCCCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceeccCCCCCCCCCCC
Q 029450           44 RIIKME---DSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDD  113 (193)
Q Consensus        44 ~fl~~~---~a~~l~~~L~~~~~w~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ysg~~~~~~~w~~  113 (193)
                      +-|+.+   +.+++|+.|+++++|+++.++||||.+.+      ||++||||+.+. .|+|||..+.+.||++
T Consensus        45 ~slp~~LH~~vd~lF~~Ll~ei~WqQD~IrIfGK~v~t------PRLtAWyGD~g~-tY~YSGi~l~p~PWTp  110 (495)
T 3lfm_A           45 SSVSEELHKEVQEAFLTLHKHGCLFRDLVRIQGKDLLT------PVSRILIGNPGC-TYKYLNTRLFTVPWPV  110 (495)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTTCCBCCEECGGGCCEEC------SSEEEEEESTTB-EEEETTEEEECEECCC
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCCCCCCchhcCCceecc------ceeEEEecCCCC-ceecCCCcccCCCCCc
Confidence            445654   67889999999999999999999999998      999999999999 5999999999999984

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A

Probab=88.71  E-value=6  Score=31.29  Aligned_cols=100  Identities=12%  Similarity=0.087  Sum_probs=56.7

Q ss_pred             ccEEEeCCCCceEEEeCCCCCHHHHHHHHHHHHhcCCCCCceEee--cCcEEEeeeeecCCee--eEEEcCCCCcceecc
Q 029450           27 QRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRV--FGRSCLQVACISTPRD--TCYVASEGVTQLIYS  102 (193)
Q Consensus        27 ~~~~~~l~~g~~v~~~~~fl~~~~a~~l~~~L~~~~~w~~~~~~~--~Gk~~~~~~~~~~pR~--~~wy~~~~~~~Y~Ys  102 (193)
                      +.+.+.+.+  .+.++++||+++|++.|.+.+...  +.+-.+.-  .|+....     .-|.  .+|....        
T Consensus        12 k~e~ls~~P--~i~~~~~fLs~~Ec~~li~~~~~~--~~~s~v~~~~~g~~~~~-----~~R~s~~~~l~~~--------   74 (224)
T 2jig_A           12 EVVHLSWSP--RAFLLKNFLSDEECDYIVEKARPK--MVKSSVVDNESGKSVDS-----EIRTSTGTWFAKG--------   74 (224)
T ss_dssp             CEEEEETTT--TEEEETTCSCHHHHHHHHHHHGGG--CEECEEEETTTTEEEEC-----SSBCSEEEECCTT--------
T ss_pred             ceEEEeCCC--CEEEEcccCCHHHHHHHHHHhhcc--CeeeeeecCCCCccccc-----CCEEEeeeEecCC--------
Confidence            345666655  699999999999999999888652  33322211  1222111     1121  2233210        


Q ss_pred             CCCCCCCCCCCCchHHHHHHHHHhhcCCCC---CceEEEeeecCCCCCceecccCC
Q 029450          103 GYRPHPYSWDDFPPLKDILDIVLKVLPGSR---FNSLLLNRYKGGNDYVGWHADDE  155 (193)
Q Consensus       103 g~~~~~~~w~~~P~L~~l~~~~~e~~~g~~---fn~~LvN~Y~dG~d~ig~HsD~e  155 (193)
                               . .|.+..+.+++ ...++..   .....+..|..| ..-.+|.|..
T Consensus        75 ---------~-~~~~~~i~~ri-~~~~gl~~~~~e~~qv~rY~~G-~~y~~H~D~~  118 (224)
T 2jig_A           75 ---------E-DSVISKIEKRV-AQVTMIPLENHEGLQVLHYHDG-QKYEPHYDYF  118 (224)
T ss_dssp             ---------C-SHHHHHHHHHH-HHHHTCCGGGBCCCEEEEEETT-CCEEEECCSS
T ss_pred             ---------C-CHHHHHHHHHH-HHHhCCCcccccceEEEecCCC-ccccCcccCC
Confidence                     0 13455554443 3345543   334788899997 5789999964

>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}

Probab=84.75  E-value=1.3  Score=36.37  Aligned_cols=37  Identities=14%  Similarity=0.202  Sum_probs=28.3

Q ss_pred             EeCCCCceEEEeCCCCCHHHHHHHHHHHHhcCCCCCce
Q 029450           31 VDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPT   68 (193)
Q Consensus        31 ~~l~~g~~v~~~~~fl~~~~a~~l~~~L~~~~~w~~~~   68 (193)
                      ..|--+..+..+++||+++|++.|.+.+ +..+|....
T Consensus        13 ~~~~~~~~i~~i~dvLs~~Ec~~li~~~-e~~~~~dg~   49 (243)
T 3dkq_A           13 ENLYFQGMLIEIPNVFSKQEVSHLREQL-DARRWIDGN   49 (243)
T ss_dssp             -CCCCBTTBEEECCSSCHHHHHHHHHHH-HTSCCEEEC
T ss_pred             cccccCCCEEEECCCCCHHHHHHHHHHH-hhCCCccCc
Confidence            4455567799999999999999998877 456786433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	193
d2iuwa1	210	b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s	1e-17
d2fdia1	200	b.82.2.10 (A:15-214) Alkylated DNA repair protein	3e-06

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (183), Expect = 1e-17
 Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 11/145 (7%)

Query: 37  SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGV 96
           S V  +P  + ++++    + L   +PW + T      +  Q    +   +  Y      
Sbjct: 19  SRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELPYT----- 73

Query: 97  TQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEK 156
               YS     P     + P+   L   ++   G  FNSLL N Y+   D V WH+DDE 
Sbjct: 74  ----YSRITMEP--NPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEP 127

Query: 157 LYGSTPEIASVSFGCERDFLLKIKP 181
             G  P IAS+SFG  R F ++ KP
Sbjct: 128 SLGRCPIIASLSFGATRTFEMRKKP 152

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 15/98 (15%), Positives = 25/98 (25%), Gaps = 9/98 (9%)

Query: 101 YSGYRPHPYSWDDFPPLKDILDIVLKVL---------PGSRFNSLLLNRYKGGNDYVGWH 151
             GY   P       P   +      +          P  + ++ L+NRY  G       
Sbjct: 59  RQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQ 118

Query: 152 ADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQEEL 189
             DE    +     S+       F    +     +  L
Sbjct: 119 DKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLL 156

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d2iuwa1	210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	99.97
d2fdia1	200	Alkylated DNA repair protein AlkB {Escherichia col	99.88

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.8e-30  Score=207.04  Aligned_cols=147  Identities=30%  Similarity=0.485  Sum_probs=124.1

Q ss_pred             cccEEEeCCCC-ceEEEeCCCCCHHHHHHHHHHHHhcCCCCCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceeccCC
Q 029450           26 KQRMVVDLGNG-SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGY  104 (193)
Q Consensus        26 ~~~~~~~l~~g-~~v~~~~~fl~~~~a~~l~~~L~~~~~w~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ysg~  104 (193)
                      |..++-..|.| +.+.|+|+||++++++.||+.|.++++|+++.++++|+.+..      ||+++|+++.   .|.|++.
T Consensus         7 ~~~~~~~~p~g~~~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~~~~~~~g~~~~~------pR~~~~~~d~---~y~y~~~   77 (210)
T d2iuwa1           7 GVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQ------PRLTAWYGEL---PYTYSRI   77 (210)
T ss_dssp             EEEEEECCSSSCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESSSCEEEC------SSEEEEEECC---CTTSCHH
T ss_pred             CceEeccCCCCcceEEEECCcCCHHHHHHHHHHHHhhCCccccceeccCcccce------eeeeEEecCc---Ccccccc
Confidence            33444445544 479999999999999999999999999999999999999988      9999999875   3888877


Q ss_pred             CCC-CCCCCCCchHHHHHHHHHhhcCCCCCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEeecCCC
Q 029450          105 RPH-PYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK  183 (193)
Q Consensus       105 ~~~-~~~w~~~P~L~~l~~~~~e~~~g~~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~~~~  183 (193)
                      ... ..+|+  |.|..+.+.+ ++.++..+|.|+||+|.+|+++||||+|++..++++++|||||||++|.|.||++..+
T Consensus        78 ~~~~~~~~~--~~l~~l~~~~-~~~~~~~~~~~~ln~Y~~~~~~I~~H~D~~~~~~~~~~I~slSlG~~~~~~~r~~~~~  154 (210)
T d2iuwa1          78 TMEPNPHWH--PVLRTLKNRI-EENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPP  154 (210)
T ss_dssp             HHCCBSSCC--HHHHHHHHHH-HHHHSCCCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC-
T ss_pred             ccccCCCCc--HHHHHHHHhh-hhhcCccchhhhhhccccCCCccccCcCCchhcccCCceeEEeeCCceEEEEcccccc
Confidence            544 35687  5788776654 4467889999999999999999999999999999999999999999999999987654


Q ss_pred             C
Q 029450          184 S  184 (193)
Q Consensus       184 ~  184 (193)
                      .
T Consensus       155 ~  155 (210)
T d2iuwa1         155 E  155 (210)
T ss_dssp             -
T ss_pred             c
Confidence            3

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: Alkylated DNA repair protein AlkB
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.9e-22  Score=163.08  Aligned_cols=150  Identities=18%  Similarity=0.263  Sum_probs=108.5

Q ss_pred             CCCCceEEEeCCCCCHHHHHHHHHHHHh---cCCCCCceEeecCcEEEeeeeecCCeeeEEEcCCCCcceeccCCCC-CC
Q 029450           33 LGNGSEVIYFPRIIKMEDSWKFFDYLNN---RIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRP-HP  108 (193)
Q Consensus        33 l~~g~~v~~~~~fl~~~~a~~l~~~L~~---~~~w~~~~~~~~Gk~~~~~~~~~~pR~~~wy~~~~~~~Y~Ysg~~~-~~  108 (193)
                      |++|  +.++++|+.. ++.+|++.+.+   +.||.++... .|+.+.+ .+ .+-+..+|+++..  .|+|++... ..
T Consensus         1 lapG--~v~l~~f~~~-~~~~ll~~~~~~~~~~p~r~~~~p-~g~~msv-~~-~~~g~~gW~~d~~--~Yry~~~~~~~~   72 (200)
T d2fdia1           1 LAAG--AVILRRFAFN-AAEQLIRDINDVASQSPFRQMVTP-GGYTMSV-AM-TNCGHLGWTTHRQ--GYLYSPIDPQTN   72 (200)
T ss_dssp             CCTT--EEEETTTTTT-THHHHHHHHHHHHHHSCCBCCBCT-TSCBCSS-EE-EEESSBEEEEETT--EEEEESBCTTTS
T ss_pred             CCCC--EEEECCcCCH-HHHHHHHHHHHHHhhCCceeeecC-CCCcceE-EE-EeccccccccCCc--CcccccccCCCC
Confidence            4566  7889999865 45567777654   5799887765 3766533 00 0011226999875  599998765 46


Q ss_pred             CCCCCCch-HHHHHHHHHhh--cCCCCCceEEEeeecCCCCCceecccCCCCcCCCCcEEEEEcCCeeeeEEeecCCCCc
Q 029450          109 YSWDDFPP-LKDILDIVLKV--LPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSY  185 (193)
Q Consensus       109 ~~w~~~P~-L~~l~~~~~e~--~~g~~fn~~LvN~Y~dG~d~ig~HsD~e~~lg~~~~IaSlSLGa~R~F~~r~~~~~~~  185 (193)
                      .+||++|. |.++.+++.+.  ..+..||+||||+|++|++.++||.|+|..++  .+|+|||||++|.|+|+++....+
T Consensus        73 ~~wp~iP~~l~~L~~~~~~~~~~~~~~pn~~LvN~Y~~G~~~~~h~dddE~~~~--~pIvslSLG~~~~f~f~~~~~~~~  150 (200)
T d2fdia1          73 KPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLR--APIVSVSLGLPAIFQFGGLKRNDP  150 (200)
T ss_dssp             SBCCCCCHHHHHHHHHHHHHHTCTTCCCSEEEEEEECTTCCEEEECCCCSSCTT--SCEEEEEEESCEEEEECCSSTTSC
T ss_pred             CCCCCccHHHHHHHHHHHHHcCCCccCCCeeEEEEecCCCCccccccCCccccC--CCceEEEEeCCeeEEecccccCCc
Confidence            78998884 67776665432  24567999999999998655566777888775  579999999999999999888777


Q ss_pred             eeEEecc
Q 029450          186 QEELMMN  192 (193)
Q Consensus       186 ~~~~~l~  192 (193)
                      ..++.|.
T Consensus       151 ~~~~~L~  157 (200)
T d2fdia1         151 LKRLLLE  157 (200)
T ss_dssp             CEEEEEC
T ss_pred             eEEEEcC
Confidence            7777764