Citrus Sinensis ID: 029453
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 193 | 2.2.26 [Sep-21-2011] | |||||||
| O04834 | 193 | GTP-binding protein SAR1A | yes | no | 1.0 | 1.0 | 0.901 | 1e-103 | |
| Q01474 | 193 | GTP-binding protein SAR1B | no | no | 0.994 | 0.994 | 0.921 | 1e-102 | |
| O04266 | 193 | GTP-binding protein SAR1A | N/A | no | 1.0 | 1.0 | 0.901 | 1e-102 | |
| P52884 | 193 | GTP-binding protein SAR2 | N/A | no | 1.0 | 1.0 | 0.870 | 1e-99 | |
| O04267 | 195 | GTP-binding protein SAR1B | N/A | no | 0.994 | 0.984 | 0.896 | 4e-99 | |
| P52885 | 198 | GTP-binding protein SAR1 | N/A | no | 1.0 | 0.974 | 0.742 | 2e-80 | |
| Q4P0I7 | 189 | Small COPII coat GTPase S | N/A | no | 0.979 | 1.0 | 0.640 | 2e-69 | |
| Q4WJS7 | 189 | Small COPII coat GTPase s | yes | no | 0.979 | 1.0 | 0.651 | 3e-69 | |
| A1D4D1 | 189 | Small COPII coat GTPase s | N/A | no | 0.979 | 1.0 | 0.645 | 5e-69 | |
| Q877B9 | 189 | Small COPII coat GTPase s | yes | no | 0.979 | 1.0 | 0.645 | 8e-69 |
| >sp|O04834|SAR1A_ARATH GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 374 bits (960), Expect = e-103, Method: Compositional matrix adjust.
Identities = 174/193 (90%), Positives = 189/193 (97%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MF++DWFYG+L SLGLWQKEAKILFLGLDN+GKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1 MFMIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IGKIKFKAFDLGGHQ+ARRVWKDYYAKVDAVVYL+DAYDKERF+ESK+ELDALLSDE+LA
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLA 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VPFLILGNKIDIPYAASEDELRYH+GL+NFTTGKG VNL ++NVRPLEVFMCSIVRKMG
Sbjct: 121 SVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMG 180
Query: 181 YGEGFKWLSQYIK 193
YGEGFKW+SQYIK
Sbjct: 181 YGEGFKWVSQYIK 193
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q01474|SAR1B_ARATH GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/192 (92%), Positives = 185/192 (96%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFL DWFYGIL SLGLWQKEAKILFLGLDN+GKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IGKIKFKAFDLGGHQ+ARRVWKDYYAKVDAVVYL+DAYDKERF+ESKRELDALLSDEALA
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALA 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VPFLILGNKIDIPYAASEDELRYH+GLTNFTTGKG V L ++ VRPLEVFMCSIVRKMG
Sbjct: 121 TVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVTLGDSGVRPLEVFMCSIVRKMG 180
Query: 181 YGEGFKWLSQYI 192
YGEGFKWLSQYI
Sbjct: 181 YGEGFKWLSQYI 192
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04266|SAR1A_BRACM GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 370 bits (951), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/193 (90%), Positives = 188/193 (97%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MF++DWFYG+L SLGLWQKEAKILFLGLDN+GKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1 MFVIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IGKIKFKAFDLGGHQ+ARRVWKDYYAKVDAVVYL+DAYDKERF+ESK+ELDALLSDE+LA
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLA 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VPFLILGNKIDIPYAASEDELRYH+GL+NFTTGKG V+L +NVRPLEVFMCSIVRKMG
Sbjct: 121 TVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVDLVGSNVRPLEVFMCSIVRKMG 180
Query: 181 YGEGFKWLSQYIK 193
YGEGFKWLSQYIK
Sbjct: 181 YGEGFKWLSQYIK 193
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Brassica campestris (taxid: 3711) |
| >sp|P52884|SAR2_SOLLC GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (928), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 168/193 (87%), Positives = 183/193 (94%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFLVDWFYG+L SLGLWQK+AKILFLGLDN+GKTTLLHMLKDERLVQHQPTQYPTSEELS
Sbjct: 1 MFLVDWFYGVLASLGLWQKDAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IG IKFKAFDLGGHQ+ARRVW+DYYAKVDAVVYL+DA D+ERF E+K+ELD LLSDE+L
Sbjct: 61 IGNIKFKAFDLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKELDGLLSDESLT 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
+VPFLILGNKIDIPYAASEDELRYH+GLT TTGKGN+NL TNVRP+EVFMCSIVRKMG
Sbjct: 121 NVPFLILGNKIDIPYAASEDELRYHLGLTGVTTGKGNINLAGTNVRPIEVFMCSIVRKMG 180
Query: 181 YGEGFKWLSQYIK 193
YGEGFKW+SQYIK
Sbjct: 181 YGEGFKWMSQYIK 193
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Solanum lycopersicum (taxid: 4081) |
| >sp|O04267|SAR1B_BRACM GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (923), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 174/194 (89%), Positives = 183/194 (94%), Gaps = 2/194 (1%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFL DWFYGIL SLGLWQKEAKILFLGLDN+GKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IGKIKFKAFDLGGHQ+ARRVWKDYYAKVDAVVYL+DAYDKERFSESK+ELDALLSD+ALA
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDDALA 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNL--DNTNVRPLEVFMCSIVRK 178
VPFLILGNKID PYAASEDELRYH+GLTNFTTGKG V ++ VRPLEVFMCSIVRK
Sbjct: 121 TVPFLILGNKIDNPYAASEDELRYHLGLTNFTTGKGKVTTAGGDSGVRPLEVFMCSIVRK 180
Query: 179 MGYGEGFKWLSQYI 192
MGYGEGFKWLSQYI
Sbjct: 181 MGYGEGFKWLSQYI 194
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Brassica campestris (taxid: 3711) |
| >sp|P52885|SAR1_TOBAC GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (762), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/198 (74%), Positives = 167/198 (84%), Gaps = 5/198 (2%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFLVDWFYGIL +LGLWQKEAKILFLGLDN+GKTTLLHMLKDERLVQHQPTQYPTSEELS
Sbjct: 1 MFLVDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IGKIKFKAFDLGGHQ+ARRVWKDYYAKVDAVVYL+D++DKERF+ESK+ELDALLS +
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLSGWSSL 120
Query: 121 DVPFLILGN---KIDIPYAA-SEDELRYHMGLTNFTT-GKGNVNLDNTNVRPLEVFMCSI 175
FL L N +I+ P + RYHMG + +G VNL ++NVRP+EVFMCSI
Sbjct: 121 AHCFLFLDNWVTRIEHPICCLRKMNWRYHMGANGASPLARGKVNLADSNVRPVEVFMCSI 180
Query: 176 VRKMGYGEGFKWLSQYIK 193
VR+MGYGEGF+W+SQYIK
Sbjct: 181 VRQMGYGEGFRWMSQYIK 198
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Nicotiana tabacum (taxid: 4097) |
| >sp|Q4P0I7|SAR1_USTMA Small COPII coat GTPase SAR1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SAR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (668), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 123/192 (64%), Positives = 155/192 (80%), Gaps = 3/192 (1%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MF+++WF+ IL LGL K AKILFLGLDN+GKTTLLHMLK++RL QPT +PTSEEL+
Sbjct: 1 MFIINWFWDILAQLGLAHKNAKILFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELA 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IG++KF +DLGGHQ ARR+WKDY+ +VD +V+L+D D ERF+E++ ELDALLS E L+
Sbjct: 61 IGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELS 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VPFLILGNKID P A SE+ELR +GL TTGKG V L ++RP+E+FMCS+V + G
Sbjct: 121 SVPFLILGNKIDAPGAVSEEELRQAIGLYQ-TTGKGKVPLK--DIRPIEIFMCSVVMRQG 177
Query: 181 YGEGFKWLSQYI 192
YGEGF+W+SQYI
Sbjct: 178 YGEGFRWISQYI 189
|
Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. SAR1 controls the coat assembly in a stepwise manner. Activated SAR1-GTP binds to membranes first and recruits the SEC23/24 complex. These SEC23/24-SAR1 prebudding intermediates are then collected by the SEC13/31 complex as subunits polymerize to form coated transport vesicles. Conversion to SAR1-GDP triggers coat release and recycles COPII subunits. Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
| >sp|Q4WJS7|SAR1_ASPFU Small COPII coat GTPase sar1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=sar1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (665), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 125/192 (65%), Positives = 153/192 (79%), Gaps = 3/192 (1%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
M++++WFY IL SLGL K AK+LFLGLDN+GKTTLLHMLK++R+ QPT +PTSEEL+
Sbjct: 1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELA 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IG +F FDLGGHQ ARR+WKDY+ +V +V+L+DA D ERF ESK ELDALL+ E LA
Sbjct: 61 IGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELA 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VPFLILGNKID P A SEDELR+ +GL TTGKG V L+ +RP+EVFMCS+V + G
Sbjct: 121 KVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPLE--GIRPIEVFMCSVVMRQG 177
Query: 181 YGEGFKWLSQYI 192
YGEG +WLSQY+
Sbjct: 178 YGEGIRWLSQYV 189
|
Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. Sar1 controls the coat assembly in a stepwise manner. Activated Sar1-GTP binds to membranes first and recruits the sec23/24 complex. These sec23/24-sar1 prebudding intermediates are then collected by the Sec13/31 complex as subunits polymerize to form coated transport vesicles. Conversion to sar1-GDP triggers coat release and recycles COPII subunits. Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
| >sp|A1D4D1|SAR1_NEOFI Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (663), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 124/192 (64%), Positives = 153/192 (79%), Gaps = 3/192 (1%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
M++++WFY +L SLGL K AK+LFLGLDN+GKTTLLHMLK++R+ QPT +PTSEEL+
Sbjct: 1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELA 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IG +F FDLGGHQ ARR+WKDY+ +V +V+L+DA D ERF ESK ELDALL+ E LA
Sbjct: 61 IGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELA 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VPFLILGNKID P A SEDELR+ +GL TTGKG V L+ +RP+EVFMCS+V + G
Sbjct: 121 KVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPLE--GIRPIEVFMCSVVMRQG 177
Query: 181 YGEGFKWLSQYI 192
YGEG +WLSQY+
Sbjct: 178 YGEGIRWLSQYV 189
|
Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. Sar1 controls the coat assembly in a stepwise manner. Activated Sar1-GTP binds to membranes first and recruits the sec23/24 complex. These sec23/24-sar1 prebudding intermediates are then collected by the Sec13/31 complex as subunits polymerize to form coated transport vesicles. Conversion to sar1-GDP triggers coat release and recycles COPII subunits. Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
| >sp|Q877B9|SAR1_ASPOR Small COPII coat GTPase sar1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sar1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (662), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 124/192 (64%), Positives = 153/192 (79%), Gaps = 3/192 (1%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
M++++WFY +L SLGL K AK+LFLGLDN+GKTTLLHMLK++R+ QPT +PTSEEL+
Sbjct: 1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTAHPTSEELA 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IG +F FDLGGHQ ARR+WKDY+ +V +V+L+DA D ERF ESK ELDALL+ E LA
Sbjct: 61 IGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELA 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VPFLILGNKID P A SEDELR+ +GL TTGKG V L+ +RP+EVFMCS+V + G
Sbjct: 121 KVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPLE--GIRPIEVFMCSVVMRQG 177
Query: 181 YGEGFKWLSQYI 192
YGEG +WLSQY+
Sbjct: 178 YGEGIRWLSQYV 189
|
Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. Sar1 controls the coat assembly in a stepwise manner. Activated Sar1-GTP binds to membranes first and recruits the sec23/24 complex. These sec23/24-sar1 prebudding intermediates are then collected by the Sec13/31 complex as subunits polymerize to form coated transport vesicles. Conversion to sar1-GDP triggers coat release and recycles COPII subunits. Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516) EC: 3 EC: . EC: 6 EC: . EC: 5 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 193 | ||||||
| 255548481 | 193 | GTP-binding protein sar1, putative [Rici | 1.0 | 1.0 | 0.927 | 1e-103 | |
| 359807632 | 193 | uncharacterized protein LOC100811178 [Gl | 1.0 | 1.0 | 0.927 | 1e-103 | |
| 449436425 | 193 | PREDICTED: GTP-binding protein SAR1A-lik | 1.0 | 1.0 | 0.917 | 1e-103 | |
| 297814115 | 193 | Os01g0254000 [Arabidopsis lyrata subsp. | 1.0 | 1.0 | 0.917 | 1e-102 | |
| 225437537 | 193 | PREDICTED: GTP-binding protein SAR1A [Vi | 1.0 | 1.0 | 0.911 | 1e-102 | |
| 449466739 | 193 | PREDICTED: GTP-binding protein SAR1A-lik | 1.0 | 1.0 | 0.911 | 1e-102 | |
| 359487540 | 193 | PREDICTED: LOW QUALITY PROTEIN: GTP-bind | 1.0 | 1.0 | 0.911 | 1e-102 | |
| 449454032 | 193 | PREDICTED: GTP-binding protein SAR1A-lik | 1.0 | 1.0 | 0.917 | 1e-102 | |
| 297843056 | 193 | Os01g0254000 [Arabidopsis lyrata subsp. | 1.0 | 1.0 | 0.911 | 1e-102 | |
| 449469040 | 193 | PREDICTED: GTP-binding protein SAR1A-lik | 1.0 | 1.0 | 0.906 | 1e-102 |
| >gi|255548481|ref|XP_002515297.1| GTP-binding protein sar1, putative [Ricinus communis] gi|223545777|gb|EEF47281.1| GTP-binding protein sar1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/193 (92%), Positives = 190/193 (98%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFL+DWFYG+L SLGLWQKEAKILFLGLDN+GKTTLLHMLKDERLVQHQPTQYPTSEELS
Sbjct: 1 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IGKIKFKAFDLGGHQ+ARRVWKDYYAKVDAVVYL+DAYDKERF+ESK+ELDALLSDEALA
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
+VPFLILGNKIDIPYAASEDELRYH+GLTNFTTGKG VNL +TNVRPLEVFMCSIVRKMG
Sbjct: 121 NVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLTDTNVRPLEVFMCSIVRKMG 180
Query: 181 YGEGFKWLSQYIK 193
YG+GFKWLSQYIK
Sbjct: 181 YGDGFKWLSQYIK 193
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359807632|ref|NP_001241165.1| uncharacterized protein LOC100811178 [Glycine max] gi|255645912|gb|ACU23445.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/193 (92%), Positives = 190/193 (98%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFLVDWFYGIL +LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS
Sbjct: 1 MFLVDWFYGILATLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IGKIKFKAFDLGGHQ+ARRVWKDYYA+VDAVVYL+DA+DKERFSESK+ELDALLSDE+LA
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAFDKERFSESKKELDALLSDESLA 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
+VPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKG VNL ++NVRPLEVFMCSIVRKMG
Sbjct: 121 NVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMG 180
Query: 181 YGEGFKWLSQYIK 193
YGEGF+WLSQYIK
Sbjct: 181 YGEGFQWLSQYIK 193
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436425|ref|XP_004135993.1| PREDICTED: GTP-binding protein SAR1A-like [Cucumis sativus] gi|449505318|ref|XP_004162434.1| PREDICTED: GTP-binding protein SAR1A-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/193 (91%), Positives = 190/193 (98%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFLVDWFYG+L SLGLWQKEAKILFLGLDN+GKTTLLHMLKDERLVQHQPTQYPTSEELS
Sbjct: 1 MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IGKIKFKAFDLGGHQ+ARRVWKDYYAKVDAVVYL+DAYDKERF+ESK+ELDALLSDE+LA
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLA 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
+VPFL+LGNKIDIPYAASEDELRYH+GLTNFTTGKG VNL +TNVRPLEVFMCSIVRKMG
Sbjct: 121 NVPFLVLGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLADTNVRPLEVFMCSIVRKMG 180
Query: 181 YGEGFKWLSQYIK 193
YG+GFKW+SQYIK
Sbjct: 181 YGDGFKWVSQYIK 193
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297814115|ref|XP_002874941.1| Os01g0254000 [Arabidopsis lyrata subsp. lyrata] gi|297320778|gb|EFH51200.1| Os01g0254000 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/193 (91%), Positives = 190/193 (98%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFLVDWFYG+L SLGLWQKEAKILFLGLDN+GKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1 MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IGKIKFKAFDLGGHQ+ARRVWKDYYAKVDAVVYL+DAYDKERF+ESK+ELDALLSDE+LA
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLA 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
+VPFLILGNKIDIPYAASEDELRYH+GL+NFTTGKG VNL ++NVRPLEVFMCSIVRKMG
Sbjct: 121 NVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMG 180
Query: 181 YGEGFKWLSQYIK 193
YGEGFKWLSQYIK
Sbjct: 181 YGEGFKWLSQYIK 193
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437537|ref|XP_002275765.1| PREDICTED: GTP-binding protein SAR1A [Vitis vinifera] gi|297743967|emb|CBI36937.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/193 (91%), Positives = 190/193 (98%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MF++DWFYG+L SLGLWQKEAKILFLGLDN+GKTTLLHMLKDERLVQHQPTQYPTSEELS
Sbjct: 1 MFILDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IGKIKFKAFDLGGHQ+ARRVWKDYYAKVDAVVYL+DAYDKERF+ESK+ELDALLSDEALA
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
+VPFL+LGNKIDIPYAASEDELRYH+GLTNFTTGKG VNL ++NVRPLEVFMCSIVRKMG
Sbjct: 121 NVPFLVLGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLADSNVRPLEVFMCSIVRKMG 180
Query: 181 YGEGFKWLSQYIK 193
YG+GFKWLSQYIK
Sbjct: 181 YGDGFKWLSQYIK 193
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449466739|ref|XP_004151083.1| PREDICTED: GTP-binding protein SAR1A-like [Cucumis sativus] gi|449501516|ref|XP_004161389.1| PREDICTED: GTP-binding protein SAR1A-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/193 (91%), Positives = 189/193 (97%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFLVDWFYG+L SLGLWQKEAKILFLGLDN+GKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1 MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IGKIKFKAFDLGGHQ+ARRVWKDYYAKVDAVVYL+DAYDKERF+ESK+ELDALLSDEALA
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFTESKKELDALLSDEALA 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
DVPFL+LGNKIDIPYAASEDELR+H+GL+NFTTGKG VNL TNVRPLEV+MCSIVRKMG
Sbjct: 121 DVPFLVLGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTQTNVRPLEVYMCSIVRKMG 180
Query: 181 YGEGFKWLSQYIK 193
YG+GFKWLSQYIK
Sbjct: 181 YGDGFKWLSQYIK 193
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487540|ref|XP_003633611.1| PREDICTED: LOW QUALITY PROTEIN: GTP-binding protein SAR1A-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/193 (91%), Positives = 190/193 (98%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFL+DWFYG+L SLGLWQKEAKILFLGLDN+GKTTLLHMLKDERLVQHQPTQYPTSEELS
Sbjct: 1 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IGKIKFKAFDLGGHQ+ARRVWKDYYAKVDAVVYL+DAYDKERF+ESK+ELDALLSDEALA
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALA 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
+VPFL+LGNKIDIPYAASEDELRYH+GLTNFTTGKG V+L ++NVRPLEVFMCSIVRKMG
Sbjct: 121 NVPFLVLGNKIDIPYAASEDELRYHLGLTNFTTGKGKVSLADSNVRPLEVFMCSIVRKMG 180
Query: 181 YGEGFKWLSQYIK 193
YG+GFKWLSQYIK
Sbjct: 181 YGDGFKWLSQYIK 193
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454032|ref|XP_004144760.1| PREDICTED: GTP-binding protein SAR1A-like [Cucumis sativus] gi|449490843|ref|XP_004158723.1| PREDICTED: GTP-binding protein SAR1A-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/193 (91%), Positives = 190/193 (98%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFLVDWFYG+L SLGLWQKEAKILFLGLDN+GKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1 MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IGKIKFKAFDLGGHQ+ARRVWKDYYAKVDAVVYL+DAYDKERF+ESK+ELDALLSDE+LA
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFTESKKELDALLSDESLA 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
DVPFLILGNKIDIPYAASEDELRY++GLTNFTTGKG VNL ++NVRPLEVFMCSIVRKMG
Sbjct: 121 DVPFLILGNKIDIPYAASEDELRYNLGLTNFTTGKGKVNLGDSNVRPLEVFMCSIVRKMG 180
Query: 181 YGEGFKWLSQYIK 193
YG+GFKWLSQYIK
Sbjct: 181 YGDGFKWLSQYIK 193
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297843056|ref|XP_002889409.1| Os01g0254000 [Arabidopsis lyrata subsp. lyrata] gi|297335251|gb|EFH65668.1| Os01g0254000 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/193 (91%), Positives = 189/193 (97%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFLVDWFYG+L SLGLWQKEAKILFLGLDN+GKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1 MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IGKIKFKAFDLGGHQ+ARRVWKDYYAKVDAVVYL+DAYDKERF+ESK+ELDALLSDE+LA
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLA 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VPFLILGNKIDIPYAASEDELR+H+GL+NFTTGKG VNL ++NVRPLEVFMCSIVRKMG
Sbjct: 121 TVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMG 180
Query: 181 YGEGFKWLSQYIK 193
YGEGFKWLSQYIK
Sbjct: 181 YGEGFKWLSQYIK 193
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469040|ref|XP_004152229.1| PREDICTED: GTP-binding protein SAR1A-like [Cucumis sativus] gi|449524132|ref|XP_004169077.1| PREDICTED: GTP-binding protein SAR1A-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust.
Identities = 175/193 (90%), Positives = 189/193 (97%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFL+DWFYG+L SLGLWQKEAKILFLGLDN+GKTTLLHMLKDERLVQHQPTQYPTSEELS
Sbjct: 1 MFLIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
IGKIKFKAFDLGGHQ+ARRVWKDYYAKVDAVVYL+DA+DKERF+ESK+ELDALLSDE+LA
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAFDKERFAESKKELDALLSDESLA 120
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VPFLILGNKIDIPYAASEDELRYH+GLTNFTTGKG VNL ++NVRPLEVFMCSIVRKMG
Sbjct: 121 TVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMG 180
Query: 181 YGEGFKWLSQYIK 193
YG+GFKW+SQYIK
Sbjct: 181 YGDGFKWMSQYIK 193
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 193 | ||||||
| TAIR|locus:2132148 | 193 | SAR2 "secretion-associated RAS | 1.0 | 1.0 | 0.844 | 1.2e-88 | |
| TAIR|locus:2096104 | 193 | AT3G62560 [Arabidopsis thalian | 0.994 | 0.994 | 0.854 | 4.1e-88 | |
| TAIR|locus:2011796 | 193 | SAR1B "secretion-associated RA | 0.994 | 0.994 | 0.859 | 8.6e-88 | |
| TAIR|locus:2195306 | 193 | SARA1A "secretion-associated R | 1.0 | 1.0 | 0.818 | 8.2e-83 | |
| ASPGD|ASPL0000060507 | 189 | AN0411 [Emericella nidulans (t | 0.979 | 1.0 | 0.593 | 1.5e-58 | |
| UNIPROTKB|Q5EMZ6 | 189 | SAR1 "Small COPII coat GTPase | 0.979 | 1.0 | 0.578 | 1.9e-58 | |
| POMBASE|SPBC31F10.06c | 190 | sar1 "ADP-ribosylation factor | 0.984 | 1.0 | 0.593 | 4e-58 | |
| CGD|CAL0005033 | 190 | SAR1 [Candida albicans (taxid: | 0.984 | 1.0 | 0.593 | 1.7e-57 | |
| UNIPROTKB|Q59S78 | 190 | SAR1 "Small COPII coat GTPase | 0.984 | 1.0 | 0.593 | 1.7e-57 | |
| DICTYBASE|DDB_G0272296 | 188 | sarA "GTP-binding protein Sar1 | 0.974 | 1.0 | 0.588 | 1.2e-56 |
| TAIR|locus:2132148 SAR2 "secretion-associated RAS super family 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
Identities = 163/193 (84%), Positives = 177/193 (91%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MF++DWFYG+L SLGLWQKEAKILFLGLDN+GKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1 MFMIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXX 120
IGKIKFKAFDLGGHQ+ARRVWKDYYAKVDAVVYL+DAYDKERF+ESK+
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLA 120
Query: 121 XVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VPFLILGNKIDIPYAASEDELRYH+GL+NFTTGKG VNL ++NVRPLEVFMCSIVRKMG
Sbjct: 121 SVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMG 180
Query: 181 YGEGFKWLSQYIK 193
YGEGFKW+SQYIK
Sbjct: 181 YGEGFKWVSQYIK 193
|
|
| TAIR|locus:2096104 AT3G62560 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
Identities = 164/192 (85%), Positives = 175/192 (91%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFLVDWFYG+L +LGLWQKEAKILFLGLDN+GKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1 MFLVDWFYGVLATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXX 120
IGKIKFKAFDLGGHQ+ARRVWKDYYAKVDAVVYL+DAYDKERF+ESK+
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLA 120
Query: 121 XVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VPFLILGNKIDIPYAASEDELRYH+GLT+FTTGKG VNL TNVRPLEVFMCSIVRKMG
Sbjct: 121 NVPFLILGNKIDIPYAASEDELRYHLGLTSFTTGKGKVNLAGTNVRPLEVFMCSIVRKMG 180
Query: 181 YGEGFKWLSQYI 192
YGEGFKW+SQYI
Sbjct: 181 YGEGFKWVSQYI 192
|
|
| TAIR|locus:2011796 SAR1B "secretion-associated RAS 1B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 165/192 (85%), Positives = 173/192 (90%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFL DWFYGIL SLGLWQKEAKILFLGLDN+GKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXX 120
IGKIKFKAFDLGGHQ+ARRVWKDYYAKVDAVVYL+DAYDKERF+ESKR
Sbjct: 61 IGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALA 120
Query: 121 XVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VPFLILGNKIDIPYAASEDELRYH+GLTNFTTGKG V L ++ VRPLEVFMCSIVRKMG
Sbjct: 121 TVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVTLGDSGVRPLEVFMCSIVRKMG 180
Query: 181 YGEGFKWLSQYI 192
YGEGFKWLSQYI
Sbjct: 181 YGEGFKWLSQYI 192
|
|
| TAIR|locus:2195306 SARA1A "secretion-associated RAS super family 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
Identities = 158/193 (81%), Positives = 171/193 (88%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFL DWFYGIL SLGL +KEAKILFLGLDN+GKTTLLHMLKDERLVQHQPTQ+PTSEELS
Sbjct: 1 MFLFDWFYGILASLGLCKKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXX 120
IGKI FKAFDLGGHQ+ARRVWKD YAKVDAVVYL+DAYD++RF ESKR
Sbjct: 61 IGKINFKAFDLGGHQIARRVWKDCYAKVDAVVYLVDAYDRDRFVESKRELDALLSDEALA 120
Query: 121 XVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VP LILGNKIDIPYA+SEDELRY++GLTNFTTGKG VNL+++ VRPLEVFMCSIVRKMG
Sbjct: 121 NVPCLILGNKIDIPYASSEDELRYYLGLTNFTTGKGIVNLEDSGVRPLEVFMCSIVRKMG 180
Query: 181 YGEGFKWLSQYIK 193
YGEGFKWLSQYIK
Sbjct: 181 YGEGFKWLSQYIK 193
|
|
| ASPGD|ASPL0000060507 AN0411 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 114/192 (59%), Positives = 141/192 (73%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
M++++WFY IL SLGL K AK+LFLGLDN+GKTTLLHMLK++R+ PT +PTSEEL
Sbjct: 1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILSPTAHPTSEELV 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXX 120
IG +F FDLGGHQ ARR+WKDY+ +V +V+L+DA D ERF ESK
Sbjct: 61 IGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELS 120
Query: 121 XVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VPFL+LGNKID P A SEDELR+ +GL TTGKG V L+ +RP+EVFMCS+V + G
Sbjct: 121 KVPFLVLGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPLEG--IRPIEVFMCSVVMRQG 177
Query: 181 YGEGFKWLSQYI 192
YGEG +WLSQY+
Sbjct: 178 YGEGIRWLSQYV 189
|
|
| UNIPROTKB|Q5EMZ6 SAR1 "Small COPII coat GTPase SAR1" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 111/192 (57%), Positives = 145/192 (75%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
M++++WFY +L SLGL K AK+LFLGLDN+GKTTLLHMLK++R+ QPT +PTSEEL+
Sbjct: 1 MWIINWFYDVLSSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELA 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXX 120
IG ++F FDLGGHQ ARR+WKDY+ +V+ +V+L+DA D +RF E+K
Sbjct: 61 IGNVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHDRFPEAKAELDALLSMEELA 120
Query: 121 XVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VPF+ILGNKID P A SE+ELR+ +GL TTGKG V L+ +RP+EVFMCS+V + G
Sbjct: 121 KVPFVILGNKIDHPEAISEEELRHQLGLYQ-TTGKGKVPLEG--IRPIEVFMCSVVMRQG 177
Query: 181 YGEGFKWLSQYI 192
YGEG +WLSQY+
Sbjct: 178 YGEGIRWLSQYV 189
|
|
| POMBASE|SPBC31F10.06c sar1 "ADP-ribosylation factor Sar1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 114/192 (59%), Positives = 141/192 (73%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MF+++WFY L LGL K AK+LFLGLDN+GKTTLLHMLK++RL QPT +PTSEEL+
Sbjct: 1 MFIINWFYDALAMLGLVNKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELA 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXX 120
IG ++F FDLGGHQ ARR+W+DY+ +V+ +VYL+D D ER SESK
Sbjct: 61 IGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELA 120
Query: 121 XVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VPFLILGNKID P A SEDEL+ +GL TTGKG V+ +RP+EVFMCS+V + G
Sbjct: 121 RVPFLILGNKIDAPGAISEDELKAALGLYQ-TTGKG-VSKPVPGIRPIEVFMCSVVLRQG 178
Query: 181 YGEGFKWLSQYI 192
YGEGFKWL+QY+
Sbjct: 179 YGEGFKWLAQYV 190
|
|
| CGD|CAL0005033 SAR1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 114/192 (59%), Positives = 139/192 (72%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
M++ DWF IL SLGLW K AK+LFLGLDN+GKTTLLHMLK++RL QPT +PTSEEL+
Sbjct: 1 MWIFDWFQDILSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELA 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXX 120
IG ++F FDLGGHQ ARR+WKDY+ +V+ +V+L+DA D ERF+ESK
Sbjct: 61 IGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERFAESKAELESLFRIEELS 120
Query: 121 XVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VPF+ILGNKID+P A E EL+ +GL N TTGK L RP+EVFM S+V + G
Sbjct: 121 QVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPE-GTRPIEVFMVSVVMRSG 178
Query: 181 YGEGFKWLSQYI 192
YGE FKWLSQYI
Sbjct: 179 YGEAFKWLSQYI 190
|
|
| UNIPROTKB|Q59S78 SAR1 "Small COPII coat GTPase SAR1" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 114/192 (59%), Positives = 139/192 (72%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
M++ DWF IL SLGLW K AK+LFLGLDN+GKTTLLHMLK++RL QPT +PTSEEL+
Sbjct: 1 MWIFDWFQDILSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELA 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXX 120
IG ++F FDLGGHQ ARR+WKDY+ +V+ +V+L+DA D ERF+ESK
Sbjct: 61 IGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERFAESKAELESLFRIEELS 120
Query: 121 XVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VPF+ILGNKID+P A E EL+ +GL N TTGK L RP+EVFM S+V + G
Sbjct: 121 QVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPE-GTRPIEVFMVSVVMRSG 178
Query: 181 YGEGFKWLSQYI 192
YGE FKWLSQYI
Sbjct: 179 YGEAFKWLSQYI 190
|
|
| DICTYBASE|DDB_G0272296 sarA "GTP-binding protein Sar1A" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 113/192 (58%), Positives = 142/192 (73%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
MFL DWF+ +L LGL+ K AKILFLGLDN+GKTTLL +LKD RL + PT +PTSEEL+
Sbjct: 1 MFLFDWFWNVLSFLGLYNKNAKILFLGLDNAGKTTLLGVLKDGRLSSYLPTFHPTSEELA 60
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRXXXXXXXXXXXX 120
+G I+FKAFDLGGH+ ARR+WKDYY VDA+VYLID+ ++RF ESK+
Sbjct: 61 MGNIRFKAFDLGGHESARRLWKDYYPSVDAIVYLIDSSAQDRFVESKKELDSLLSSDELA 120
Query: 121 XVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
VPFLILGNK+DI SE++ R +GLT TTGKG L+ VRP+EVFMCS+V++ G
Sbjct: 121 NVPFLILGNKVDIGNT-SEEKFRASLGLTQ-TTGKGKTTLNG--VRPIEVFMCSVVKRYG 176
Query: 181 YGEGFKWLSQYI 192
Y EGF+WL+ Y+
Sbjct: 177 YAEGFRWLANYL 188
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O04267 | SAR1B_BRACM | No assigned EC number | 0.8969 | 0.9948 | 0.9846 | N/A | no |
| O04266 | SAR1A_BRACM | No assigned EC number | 0.9015 | 1.0 | 1.0 | N/A | no |
| P0C583 | SAR1_NEUCR | 3, ., 6, ., 5, ., - | 0.625 | 0.9792 | 1.0 | N/A | no |
| Q6BVA7 | SAR1_DEBHA | 3, ., 6, ., 5, ., - | 0.6302 | 0.9844 | 1.0 | yes | no |
| Q5BGB9 | SAR1_EMENI | 3, ., 6, ., 5, ., - | 0.6354 | 0.9792 | 1.0 | yes | no |
| Q2HA55 | SAR1_CHAGB | 3, ., 6, ., 5, ., - | 0.6230 | 0.9740 | 0.9894 | N/A | no |
| Q9QVY3 | SAR1B_CRIGR | No assigned EC number | 0.5897 | 0.9896 | 0.9646 | yes | no |
| Q6CWR7 | SAR1_KLULA | 3, ., 6, ., 5, ., - | 0.6052 | 0.9585 | 0.9736 | yes | no |
| P78976 | SAR1_HYPJE | 3, ., 6, ., 5, ., - | 0.625 | 0.9792 | 1.0 | N/A | no |
| Q01475 | SAR1_SCHPO | 3, ., 6, ., 5, ., - | 0.6406 | 0.9844 | 1.0 | yes | no |
| Q01474 | SAR1B_ARATH | No assigned EC number | 0.9218 | 0.9948 | 0.9948 | no | no |
| Q3T0T7 | SAR1B_BOVIN | No assigned EC number | 0.5948 | 0.9896 | 0.9646 | yes | no |
| Q5HZY2 | SAR1B_RAT | No assigned EC number | 0.5897 | 0.9896 | 0.9646 | yes | no |
| Q9Y6B6 | SAR1B_HUMAN | No assigned EC number | 0.5846 | 0.9896 | 0.9646 | yes | no |
| Q877B9 | SAR1_ASPOR | 3, ., 6, ., 5, ., - | 0.6458 | 0.9792 | 1.0 | yes | no |
| Q755D7 | SAR1_ASHGO | 3, ., 6, ., 5, ., - | 0.6105 | 0.9585 | 0.9736 | yes | no |
| Q0UKC0 | SAR1_PHANO | 3, ., 6, ., 5, ., - | 0.6216 | 0.9430 | 0.9837 | N/A | no |
| A1D4D1 | SAR1_NEOFI | 3, ., 6, ., 5, ., - | 0.6458 | 0.9792 | 1.0 | N/A | no |
| Q559R0 | SAR1A_DICDI | No assigned EC number | 0.6041 | 0.9740 | 1.0 | yes | no |
| Q0CUN7 | SAR1_ASPTN | 3, ., 6, ., 5, ., - | 0.6510 | 0.9792 | 1.0 | N/A | no |
| Q5PYH3 | SAR1B_PIG | No assigned EC number | 0.5897 | 0.9896 | 0.9646 | yes | no |
| Q9CQC9 | SAR1B_MOUSE | No assigned EC number | 0.5897 | 0.9896 | 0.9646 | yes | no |
| P52885 | SAR1_TOBAC | No assigned EC number | 0.7424 | 1.0 | 0.9747 | N/A | no |
| P52884 | SAR2_SOLLC | No assigned EC number | 0.8704 | 1.0 | 1.0 | N/A | no |
| P0CR30 | SAR1_CRYNJ | 3, ., 6, ., 5, ., - | 0.6302 | 0.9792 | 1.0 | yes | no |
| P0CR31 | SAR1_CRYNB | 3, ., 6, ., 5, ., - | 0.6302 | 0.9792 | 1.0 | N/A | no |
| Q4WJS7 | SAR1_ASPFU | 3, ., 6, ., 5, ., - | 0.6510 | 0.9792 | 1.0 | yes | no |
| P0C951 | SAR1_ASPNC | 3, ., 6, ., 5, ., - | 0.6510 | 0.9792 | 1.0 | yes | no |
| P0C950 | SAR1_ASPNG | 3, ., 6, ., 5, ., - | 0.6354 | 0.9792 | 1.0 | yes | no |
| A5E5G3 | SAR1_LODEL | 3, ., 6, ., 5, ., - | 0.6145 | 0.9844 | 1.0 | N/A | no |
| Q6CB54 | SAR1_YARLI | 3, ., 6, ., 5, ., - | 0.6354 | 0.9844 | 1.0 | yes | no |
| P20606 | SAR1_YEAST | 3, ., 6, ., 5, ., - | 0.6149 | 0.9430 | 0.9578 | yes | no |
| Q4P0I7 | SAR1_USTMA | 3, ., 6, ., 5, ., - | 0.6406 | 0.9792 | 1.0 | N/A | no |
| Q6FUZ9 | SAR1_CANGA | 3, ., 6, ., 5, ., - | 0.5989 | 0.9430 | 0.9629 | yes | no |
| O04834 | SAR1A_ARATH | No assigned EC number | 0.9015 | 1.0 | 1.0 | yes | no |
| Q9P4C8 | SAR1_PICPG | 3, ., 6, ., 5, ., - | 0.6302 | 0.9844 | 1.0 | yes | no |
| Q5EMZ6 | SAR1_MAGO7 | 3, ., 6, ., 5, ., - | 0.6302 | 0.9792 | 1.0 | N/A | no |
| A3LTA2 | SAR1_PICST | 3, ., 6, ., 5, ., - | 0.625 | 0.9844 | 1.0 | yes | no |
| Q23445 | SAR1_CAEEL | No assigned EC number | 0.5916 | 0.9896 | 0.9896 | yes | no |
| A5DR82 | SAR1_PICGU | 3, ., 6, ., 5, ., - | 0.6093 | 0.9844 | 1.0 | N/A | no |
| Q59S78 | SAR1_CANAL | 3, ., 6, ., 5, ., - | 0.6197 | 0.9844 | 1.0 | N/A | no |
| A1CRG9 | SAR1_ASPCL | 3, ., 6, ., 5, ., - | 0.6406 | 0.9792 | 1.0 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 193 | |||
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 1e-125 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 1e-122 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 3e-89 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 4e-51 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 6e-39 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 2e-36 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 2e-34 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 9e-32 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 2e-31 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 1e-30 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 1e-30 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 3e-28 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 3e-28 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 1e-27 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 6e-26 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 7e-26 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 2e-25 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 5e-25 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 1e-24 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 3e-22 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 1e-20 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 2e-20 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 7e-12 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 1e-11 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 2e-08 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 4e-08 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 5e-08 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 3e-06 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 1e-05 | |
| cd00880 | 161 | cd00880, Era_like, E | 3e-05 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 4e-04 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 6e-04 | |
| TIGR00450 | 442 | TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas | 0.003 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 0.003 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 349 bits (897), Expect = e-125
Identities = 131/191 (68%), Positives = 161/191 (84%)
Query: 2 FLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSI 61
F+ DWFY +L SLGL++KEAKI+FLGLDN+GKTTLLHMLKD+RL QH PT +PTSEEL+I
Sbjct: 1 FIFDWFYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTI 60
Query: 62 GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALAD 121
G +KF FDLGGH+ ARRVWKDY+ +VD +V+L+DA D ERF ESK ELD+LL+DE LA+
Sbjct: 61 GNVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELAN 120
Query: 122 VPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGY 181
VP LILGNKID P A SE+ELR +GL TTGKG V+L +N+RP+EVFMCS+V++ GY
Sbjct: 121 VPILILGNKIDKPGAVSEEELREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGY 180
Query: 182 GEGFKWLSQYI 192
GEGF+WLSQY+
Sbjct: 181 GEGFRWLSQYL 191
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 342 bits (879), Expect = e-122
Identities = 149/189 (78%), Positives = 165/189 (87%), Gaps = 5/189 (2%)
Query: 4 VDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK 63
DWFY IL SLGLW K AKILFLGLDN+GKTTLLHMLK++RL QHQPTQ+PTSEEL+IG
Sbjct: 1 FDWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGN 60
Query: 64 IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP 123
IKF FDLGGHQ ARR+WKDY+ +V+ +VYL+DAYDKERF+ESKRELDALLSDE LA VP
Sbjct: 61 IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP 120
Query: 124 FLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183
FLILGNKID PYAASEDELRY +GLTN TTGKG V VRP+EVFMCS+VR+MGYGE
Sbjct: 121 FLILGNKIDAPYAASEDELRYALGLTNTTTGKGKV-----GVRPVEVFMCSVVRRMGYGE 175
Query: 184 GFKWLSQYI 192
GFKWLSQYI
Sbjct: 176 GFKWLSQYI 184
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 259 bits (663), Expect = 3e-89
Identities = 79/186 (42%), Positives = 108/186 (58%), Gaps = 12/186 (6%)
Query: 7 FYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKF 66
F IL L W KE +IL LGLDN+GKTT+L+ LK +V PT E ++ +KF
Sbjct: 1 FLSILAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKF 60
Query: 67 KAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLI 126
+D+GG + R +W++Y+ DAV++++D+ D++R E+K EL ALL++E LAD P LI
Sbjct: 61 TVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLI 120
Query: 127 LGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFK 186
L NK D+P A SE E+R +GL RP E+ CS V G EG
Sbjct: 121 LANKQDLPGAMSEAEIRELLGLHELKD------------RPWEIQGCSAVTGEGLDEGLD 168
Query: 187 WLSQYI 192
WLS YI
Sbjct: 169 WLSNYI 174
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 4e-51
Identities = 63/169 (37%), Positives = 89/169 (52%), Gaps = 12/169 (7%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81
+IL LGLD +GKTT+L+ LK +V PT E + +KF +D+GG R +W
Sbjct: 1 RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLW 60
Query: 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE 141
K YY D +++++D+ D+ER E+K EL LL++E L P LIL NK D+P A +E E
Sbjct: 61 KHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESE 120
Query: 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190
L +GL + R + CS V G EG WL +
Sbjct: 121 LIELLGLESIK------------GRRWHIQPCSAVTGDGLDEGLDWLIE 157
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 6e-39
Identities = 58/170 (34%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78
+E +IL LGLDN+GKTT+L L E + PTQ + + K +D+GG + R
Sbjct: 14 QEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGFKLNVWDIGGQRKIR 73
Query: 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS 138
W++Y+ D ++Y+ID+ D++RF E+ +EL LL +E LA VP L+ NK D+ AA
Sbjct: 74 PYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLTAAP 133
Query: 139 EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWL 188
+E+ + NL + R + CS G EG W+
Sbjct: 134 AEEVAEAL------------NLHDIRDRSWHIQACSAKTGEGLQEGMNWV 171
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 2e-36
Identities = 60/168 (35%), Positives = 90/168 (53%), Gaps = 12/168 (7%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81
+IL LGLD +GKTT+L+ L+ +V PT E ++ +KF+ +DLGG R W
Sbjct: 1 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYW 60
Query: 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE 141
+ YY+ DA++Y++D+ D++R SK EL A+L +E L D L+ NK D+P A SE E
Sbjct: 61 RCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEAE 120
Query: 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLS 189
+ +GL+ R ++F S + G EG WL
Sbjct: 121 VAEKLGLSELKD------------RTWQIFKTSATKGEGLDEGMDWLV 156
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-34
Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 17/181 (9%)
Query: 15 GLW-----QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAF 69
LW +KE K++ +GLDN+GKTT+L+ +V PT EE+ I+F +
Sbjct: 5 SLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMW 64
Query: 70 DLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGN 129
D+GG + R W YY DAV+ +ID+ D+ER +K EL +L+ E L L+L N
Sbjct: 65 DIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLAN 124
Query: 130 KIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLS 189
K D+ A + E+ +GLT+ + C + G EG W++
Sbjct: 125 KQDLKGAMTPAEISESLGLTSIRD------------HTWHIQGCCALTGEGLPEGLDWIA 172
Query: 190 Q 190
Sbjct: 173 S 173
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 9e-32
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 23 ILFLGLDNSGKTTLLHMLKDERLVQHQ--PTQYPTSEELSIGKIKFKAFDLGGHQMARRV 80
IL LGLDNSGKTT+++ LK PT E G + F AFD+ G R +
Sbjct: 2 ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGL 61
Query: 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLS--DEALADVPFLILGNKIDIPYAAS 138
W+ YY + ++++ID+ D+ R +K EL+ LL+ D +P L NK+D+P A +
Sbjct: 62 WEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALT 121
Query: 139 EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190
++ + L N +P +F S + G EG WL
Sbjct: 122 AVKITQLLCLENIKD------------KPWHIFASSALTGEGLDEGVDWLQA 161
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 2e-31
Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 12/184 (6%)
Query: 7 FYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKF 66
IL ++E +IL LGLDN+GKTT+L E + PT + L K
Sbjct: 1 LLTILRKTKQKEREMRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIKTLEYNGYKL 60
Query: 67 KAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLI 126
+D+GG + R W++Y+ DA+++++D+ D+ R + KREL LL +E LA LI
Sbjct: 61 NIWDVGGQKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLI 120
Query: 127 LGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFK 186
NK D+P A S +E+R + LD+ +F CS V +G
Sbjct: 121 FANKQDLPGALSPEEIREVL------------ELDSIKSHHWRIFGCSAVTGENLLDGID 168
Query: 187 WLSQ 190
WL
Sbjct: 169 WLVD 172
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-30
Identities = 51/129 (39%), Positives = 79/129 (61%), Gaps = 8/129 (6%)
Query: 23 ILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYPTSEELSIGKI-----KFKAFDLGGH 74
+L LGLDN+GKTT L K + ++ P++ + L+IG I + +DLGG
Sbjct: 2 VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMFWDLGGQ 61
Query: 75 QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134
+ R +W YYA+ V+Y+ID+ D+ERF+ESK + ++++EAL VP L+L NK D+P
Sbjct: 62 EELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQDLP 121
Query: 135 YAASEDELR 143
A S E++
Sbjct: 122 DALSVAEIK 130
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 1e-30
Identities = 57/171 (33%), Positives = 92/171 (53%), Gaps = 12/171 (7%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSI-GKIKFKAFDLGGHQMARRV 80
++L LGLD++GK+TLL+ LK LV PT E L + + +D+GG + R V
Sbjct: 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60
Query: 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASED 140
WK Y D +VY++D+ D+ R ES++EL +L +E + VP ++L NK D+P A + +
Sbjct: 61 WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120
Query: 141 ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191
E+ L + + + + V+P CS V G E F+ L+ +
Sbjct: 121 EITRRFKLKKYCSDR------DWYVQP-----CSAVTGEGLAEAFRKLASF 160
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-28
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 10/148 (6%)
Query: 26 LGLDNSGKTTLLHMLK-DERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDY 84
+GL NSGKTTL++++ + PT +++ G + K +DLGG R +W+ Y
Sbjct: 5 VGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSMWERY 64
Query: 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRY 144
V+A+VY++DA D+E+ +K EL LL +L +P L+LGNK D+P A S DEL
Sbjct: 65 CRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIE 124
Query: 145 HMGLTNFT---------TGKGNVNLDNT 163
M L + T + K N+D
Sbjct: 125 QMNLKSITDREVSCYSISAKEKTNIDIV 152
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-28
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 12/172 (6%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78
KE +IL LGLD +GKTT+L+ LK + V PT E ++ +KF +D+GG R
Sbjct: 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 67
Query: 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS 138
+W+ YY +++++D+ D++R E+++EL +++D + D L+ NK D+P A
Sbjct: 68 PLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMK 127
Query: 139 EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190
E++ +GLT R V G EG WLS
Sbjct: 128 PHEIQEKLGLTRIRD------------RNWYVQPSCATSGDGLYEGLTWLSS 167
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-27
Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 16/178 (8%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
+KE +IL +GLD +GKTT+L+ LK +V PT E + +KF +D+GG
Sbjct: 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKL 74
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA 137
R +W+ YY + +++++D+ D+ER +++ EL+ +LS++ L D L+ NK D+P A
Sbjct: 75 RPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM 134
Query: 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM--CSIVRKMGYGEGFKWLSQYIK 193
S E+ +GL +VR ++ C G EG WLS IK
Sbjct: 135 STTEVTEKLGL--------------HSVRQRNWYIQGCCATTAQGLYEGLDWLSANIK 178
|
Length = 182 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 98.1 bits (244), Expect = 6e-26
Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 16/184 (8%)
Query: 11 LVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFD 70
L S +KE +IL +GLD +GKTT+L+ LK +V PT E + I F +D
Sbjct: 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWD 67
Query: 71 LGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNK 130
+GG R +W+ Y+ +++++D+ D++R E++ EL +L+++ L D L+ NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127
Query: 131 IDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYG--EGFKWL 188
D+P A + E+ +GL ++R ++ S G G EG WL
Sbjct: 128 QDLPNAMNAAEITDKLGL--------------HSLRQRHWYIQSTCATSGEGLYEGLDWL 173
Query: 189 SQYI 192
S I
Sbjct: 174 SNNI 177
|
Length = 181 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 97.7 bits (243), Expect = 7e-26
Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 12/176 (6%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
KE +IL +GLD +GKTT+L+ LK V PT E ++ I F +D+GG
Sbjct: 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKI 70
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA 137
R +W+ YY +++++D+ D++R E++ EL +L+++ L D L+ NK D+P A
Sbjct: 71 RPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM 130
Query: 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
E+ +GL + R + G EG WLS +K
Sbjct: 131 KAAEITEKLGLHSIRD------------RNWYIQPTCATSGDGLYEGLTWLSNNLK 174
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 2e-25
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81
+IL +GLD +GKTT+L+ LK +V PT E + I F +D+GG R +W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE 141
+ Y+ +++++D+ D+ER E++ EL +L+++ L D L+ NK D+P A S E
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAE 121
Query: 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191
+ +GL + R + G EG WLS
Sbjct: 122 VTDKLGLHSLRN------------RNWYIQATCATSGDGLYEGLDWLSNN 159
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 95.1 bits (236), Expect = 5e-25
Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 11/171 (6%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81
+++ LGLD +GKTT+L LK + +Q PT E + +KF +D+GG R +W
Sbjct: 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 60
Query: 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE 141
K YY AVV++ID+ ++R SE+ EL LL+++ L D LI NK D+ A S +E
Sbjct: 61 KHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE 120
Query: 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192
+ + L G R + C MG EG WLS+ +
Sbjct: 121 MTELLSLHKLCCG-----------RSWYIQGCDARSGMGLYEGLDWLSRQL 160
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.4 bits (237), Expect = 1e-24
Identities = 50/185 (27%), Positives = 73/185 (39%), Gaps = 9/185 (4%)
Query: 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIG-KIKFKAFD 70
L+ KE KI+ LG GKTTLL+ L + + P P IK + +D
Sbjct: 1 LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60
Query: 71 LGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNK 130
G + R + +YY + ++ + D+ +E E E L + A DVP L++GNK
Sbjct: 61 TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120
Query: 131 IDIPYAASEDE--LRYHMGLTNFTTGKGNVNLDNT-NVRPLEVFMCSIVRKMGYGEGFKW 187
ID+ S E L L N LE S+ E FK
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGP-NVNELFKE 179
Query: 188 LSQYI 192
L + +
Sbjct: 180 LLRKL 184
|
Length = 219 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 3e-22
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 3/135 (2%)
Query: 23 ILFLGLDNSGKTTLLHMLKDER-LVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81
IL LGLD +GKT+LLH L ER L PT S + + ++GG Q R+ W
Sbjct: 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYW 61
Query: 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE 141
K Y + +++++D+ D ER +++EL LL D+P ++L NK D+P A S E
Sbjct: 62 KRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQE 119
Query: 142 LRYHMGLTNFTTGKG 156
+ + L G+
Sbjct: 120 IHKELELEPIARGRR 134
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 1e-20
Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Query: 23 ILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWK 82
+L +GLDN+GKTTL+ L+ E + PT T +L + K + FDLGG R +W
Sbjct: 2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61
Query: 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDEL 142
+YYA+ +V+++D+ D +R E K L LL ++ P L+L NK D A ++
Sbjct: 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADV 121
Query: 143 RYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYG------EGFKWL 188
++ L N N + CS + +G EG +WL
Sbjct: 122 IEYLSLEKLV---------NENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL 164
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 2e-20
Identities = 47/131 (35%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 23 ILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSE--ELSIGK---IKFKAFDLGGHQMA 77
I+ LGLD++GKTT+L+ LK V PT+ +E ++S+G + F +D+GG +
Sbjct: 6 IVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEKL 65
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA 137
R +WK Y D +V+++D+ D ER E+K EL + VP L+L NK D+P A
Sbjct: 66 RPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPNAL 125
Query: 138 SEDELRYHMGL 148
E+ + L
Sbjct: 126 PVSEVEKLLAL 136
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 7e-12
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 14/130 (10%)
Query: 24 LFLGLDNSGKTTLLHMLKDERLVQ----HQPTQYPTSEELSI--GKIKFKAFDLGGHQMA 77
+ +G GK++LL+ L + + T+ P + GK+K D G
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60
Query: 78 RRVW-----KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKID 132
+ + D ++ ++D+ D+E ++K + L E +P +++GNKID
Sbjct: 61 GGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKE---GIPIILVGNKID 117
Query: 133 IPYAASEDEL 142
+ +EL
Sbjct: 118 LLEEREVEEL 127
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-11
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Query: 20 EAKILFLGLDNSGKTTLLHMLK--DERLVQHQPTQY----PTSEELSIGKIKFKAFDLGG 73
E KI+ +G N GK+TLL+ L + +++P T E KF D G
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60
Query: 74 HQMARRVWKDYYAKVDAV--VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKI 131
+ + + YY V++ V+ I E + + A + VP +++GNKI
Sbjct: 61 QEDYDAIRRLYYRAVESSLRVFDIVILVL-DVEEILEKQTKEIIHHAESGVPIILVGNKI 119
Query: 132 DIP 134
D+
Sbjct: 120 DLR 122
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-08
Identities = 27/139 (19%), Positives = 54/139 (38%), Gaps = 18/139 (12%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQ--------YPTSEELSIGKIKFKA-- 68
E KI+ +G +GKTT + L D+ LV + PT+ + G I+
Sbjct: 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDT 68
Query: 69 ----FDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPF 124
F G + + +W+ + L+D+ + + + + +P
Sbjct: 69 GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSR----PITFHAEEIIDFLTSRNPIPV 124
Query: 125 LILGNKIDIPYAASEDELR 143
++ NK D+ A +++R
Sbjct: 125 VVAINKQDLFDALPPEKIR 143
|
Length = 187 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 4e-08
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 58 ELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL--IDAYDK---E-----RFSESK 107
+ +KF+ FD+GG + R+ W + V A++++ + YD+ E R ES
Sbjct: 162 KFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDDSTNRLEESL 221
Query: 108 RELDALLSDEALADVPFLILGNKIDI 133
+ + + + P ++ NK D+
Sbjct: 222 NLFEEICNSPWFKNTPIILFLNKKDL 247
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-08
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 23 ILFLGLDNSGKTTLLHMLKDERLVQHQPTQYP---TSEELSIGKIKFKAFDLGGHQMAR- 78
+L LG +SGKT L L ++ + P + S K D+ GH+ R
Sbjct: 3 VLLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGKKLTLVDVPGHEKLRD 62
Query: 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRE-----LDALLSDEALAD-VPFLILGNKID 132
++ + A + A+V+++D+ F ++ R+ D L E + + +P LI NK D
Sbjct: 63 KLLEYLKASLKAIVFVVDSAT---FQKNIRDVAEFLYDILTDLEKIKNKIPILIACNKQD 119
Query: 133 I 133
+
Sbjct: 120 L 120
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-06
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 22 KILFLGLDNSGKTTLLHML-----KDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQM 76
K++ +G SGK++LL L E L T + E+ +D GG +
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA-DVPFLILGNKI 131
+ + DA++ + D D+E +E R + L + L +P +++GNK+
Sbjct: 61 LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-05
Identities = 30/154 (19%), Positives = 59/154 (38%), Gaps = 12/154 (7%)
Query: 23 ILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEE--LSIGKIKFKAFDLGGHQMARRV 80
++ GL +SGKT+L +L + + +Q P++ + F D GH R+
Sbjct: 6 VIIAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSAAYKYMLHKGFSFTLIDFPGHVKLRQK 65
Query: 81 WKDYY---AKVDAVVYLID-AYDKERFSESKRELDALLSDEALAD--VPFLILGNKIDIP 134
+ + + +V+++D + +++ L +LS L + LI NK +
Sbjct: 66 LLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIACNKQESF 125
Query: 135 YAASE----DELRYHMGLTNFTTGKGNVNLDNTN 164
A L + K LD ++
Sbjct: 126 TARPPKKIKQALEKEINTIRERRSKALSGLDGSD 159
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-05
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 27/136 (19%)
Query: 25 FLGLDNSGKTTLLHML--KDERLVQHQP--TQYPTSEEL-SIGKIKFKAFDLGG------ 73
G N GK++LL+ L ++ +V P T+ P +E + D G
Sbjct: 2 IFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEEGG 61
Query: 74 -----HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILG 128
+ AR+V + D V+ ++D+ + E +A L P L++
Sbjct: 62 LGRERVEEARQV----ADRADLVLLVVDS------DLTPVEEEAKLGLLRERGKPVLLVL 111
Query: 129 NKIDIPYAASEDELRY 144
NKID+ SE+E
Sbjct: 112 NKIDL-VPESEEEELL 126
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 4e-04
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 17/136 (12%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQPT---QYP-TSEELSIGKIKFKAFDLGGHQM 76
K++ +G GK+ ++ + R V ++ PT Y + +++ FDL GH
Sbjct: 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFS-------ESKRELDALLSDEALADVPFLILGN 129
V ++Y V+ + D D++ F E K+E + ++ ++ N
Sbjct: 62 YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQE---GGPHGNMENIVVVVCAN 118
Query: 130 KIDIPY--AASEDELR 143
KID+ A SEDE R
Sbjct: 119 KIDLTKHRAVSEDEGR 134
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 6e-04
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 20/123 (16%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERL--VQHQP--TQYPTSEELSIGKIKFKAFDLGG---- 73
++ +G N GK+TL++ L ++ V P T+ P L + D G
Sbjct: 1 RVALVGRPNVGKSTLINALTGAKVAIVSDYPGTTRDPILGVL-GLGRQIILVDTPGLIEG 59
Query: 74 ------HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLIL 127
+ R + + D ++ ++DA E +E E+ L E L P +++
Sbjct: 60 ASEGKGVEGFNRFLEA-IREADLILLVVDA--SEGLTEDDEEILEEL--EKLPKKPIILV 114
Query: 128 GNK 130
NK
Sbjct: 115 LNK 117
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.003
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 22 KILFLGLDNSGKTTLLH-MLKDER-LVQHQP--TQYPTSEELSIGKIKFKAFDLGG-HQM 76
K+ +G N GK++LL+ +LK +R +V T+ + + I K D G +
Sbjct: 205 KLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREH 264
Query: 77 ARRVWKDYYAK-------VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGN 129
A V + K D V+Y++DA S+ + D L+ D + PF+++ N
Sbjct: 265 ADFVERLGIEKSFKAIKQADLVIYVLDA------SQPLTKDDFLIIDLNKSKKPFILVLN 318
Query: 130 KIDIPYAASEDELRY 144
KID+ + E +
Sbjct: 319 KIDLKINSLEFFVSS 333
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.003
Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 32/131 (24%)
Query: 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQY--------PTSEELSIGKIKFKAFDL 71
EAK++ +G GKT+L L E+ + + + + E KI+ +D
Sbjct: 1 EAKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERK--KIRLNVWDF 58
Query: 72 GG-------HQ--MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADV 122
GG HQ + R +YL+ +D E R L +A V
Sbjct: 59 GGQEIYHATHQFFLTSR-----------SLYLL-VFDLRTGDEVSRVPYWLRQIKAFGGV 106
Query: 123 PFLIL-GNKID 132
+IL G ID
Sbjct: 107 SPVILVGTHID 117
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 193 | |||
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 100.0 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 100.0 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 100.0 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 100.0 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 100.0 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 100.0 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 100.0 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 100.0 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 100.0 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.98 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.98 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.98 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.98 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.97 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.97 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.97 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.97 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.97 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.97 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.97 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.97 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.97 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.97 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.97 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.97 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.97 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.97 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.97 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.97 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.97 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.97 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.97 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.97 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.97 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.97 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.97 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.97 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.97 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.97 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.97 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.97 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.97 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.97 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.97 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.96 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.96 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.96 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.96 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.96 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.96 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.96 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.96 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.96 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.96 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.96 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.96 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.96 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.96 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.96 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.96 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.96 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.96 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.96 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.96 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.96 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.96 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.96 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.96 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 99.96 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.96 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.96 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.96 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.96 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.96 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.96 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.96 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.96 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.96 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.96 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.96 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.96 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.96 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.96 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.96 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.95 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.95 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.95 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.95 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.95 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.95 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.95 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.95 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.95 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.95 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.95 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.95 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.95 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.95 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.95 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.95 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.95 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.95 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.95 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.95 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.95 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.95 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.95 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.94 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.94 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.94 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.94 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.94 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.94 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.94 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.94 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.94 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.94 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.93 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.93 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.93 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.93 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.93 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.93 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.93 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.93 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.93 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.93 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.93 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.92 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.92 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.92 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.92 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.92 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.91 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.91 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.91 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.91 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.91 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.91 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.91 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.91 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.91 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.91 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.91 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.91 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.9 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.9 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.9 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.9 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.9 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.9 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.9 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.9 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.9 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.9 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.9 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.89 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.89 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.89 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.89 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.89 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.89 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.89 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.89 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.89 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.89 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.88 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.88 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.88 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.88 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.88 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.88 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.88 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.88 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.88 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.88 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.87 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.87 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.87 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.87 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.87 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.87 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.87 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.86 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.86 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.86 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.86 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.86 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.86 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.86 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.85 | |
| PTZ00099 | 176 | rab6; Provisional | 99.85 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.85 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.85 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.85 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.84 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.84 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.84 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.84 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.84 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.84 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.83 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.83 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.83 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.82 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.82 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.82 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.82 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.81 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.81 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.81 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.81 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.81 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.81 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.81 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.8 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.79 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.79 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.79 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.79 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.77 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.77 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.77 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.77 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.76 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.76 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.75 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.75 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.75 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.75 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.75 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.75 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.74 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.74 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.74 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.74 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.73 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.73 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.73 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.73 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.73 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.72 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.72 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.72 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.72 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.72 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.71 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.71 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.71 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.7 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.7 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.69 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.69 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.68 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.68 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.67 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.66 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.66 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.66 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.65 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.63 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.63 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.62 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.62 | |
| PRK13768 | 253 | GTPase; Provisional | 99.62 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.61 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.61 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.6 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.57 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.57 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.56 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.55 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.54 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.54 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.54 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.54 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.51 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.5 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.49 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.48 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.48 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.47 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.47 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.47 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 99.45 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.45 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.44 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.44 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.44 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.43 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.43 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.42 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.4 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.39 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.38 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.37 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.37 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.28 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.28 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 99.28 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.27 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.25 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.25 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.23 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.23 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.23 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.22 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.22 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.21 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.21 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.21 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.2 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 99.16 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.16 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.13 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.11 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.11 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 99.11 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.08 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.08 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 99.06 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.03 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 99.03 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.01 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.0 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.98 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.94 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 98.91 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.91 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.9 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.89 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.86 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.85 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 98.84 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.84 | |
| KOG0099 | 379 | consensus G protein subunit Galphas, small G prote | 98.81 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 98.8 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.8 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 98.79 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.78 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 98.77 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.77 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.72 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 98.72 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 98.71 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.71 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.7 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.7 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.7 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.7 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.69 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.69 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.69 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.67 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.67 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.66 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 98.65 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.64 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 98.63 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.62 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.62 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.62 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.61 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 98.58 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 98.58 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 98.58 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.57 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.57 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.48 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.47 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.47 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.45 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.44 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.44 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.44 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.4 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.38 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.35 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.35 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.34 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 98.34 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 98.33 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.28 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.26 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.25 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.19 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.19 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.18 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.18 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.17 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.16 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 98.11 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 98.1 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 98.1 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.1 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 98.08 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 98.07 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.06 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.05 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.04 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 98.04 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 98.03 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.02 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.98 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 97.98 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 97.96 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.96 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.93 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.92 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.86 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.85 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.84 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.83 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.82 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.8 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.79 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.78 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 97.78 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 97.77 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 97.77 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.75 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 97.75 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.75 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.75 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.72 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 97.72 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 97.7 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.7 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.66 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 97.66 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.65 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.63 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.63 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.63 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.62 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.62 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.59 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.59 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 97.57 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.56 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.56 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 97.56 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.54 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 97.52 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.52 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.52 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 97.51 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 97.5 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.49 | |
| PF05729 | 166 | NACHT: NACHT domain | 97.49 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 97.48 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.48 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 97.48 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.46 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 97.46 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.45 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.45 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 97.45 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 97.44 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 97.44 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 97.42 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.41 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 97.41 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 97.41 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 97.4 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.4 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 97.4 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 97.39 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 97.39 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 97.39 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.39 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 97.37 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.36 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 97.35 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.35 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.34 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 97.34 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.34 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 97.33 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 97.33 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 97.33 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.33 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.32 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.31 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 97.3 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 97.3 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 97.3 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 97.29 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 97.29 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 97.28 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 97.27 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 97.27 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 97.27 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.27 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 97.26 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 97.26 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.26 |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=202.56 Aligned_cols=190 Identities=70% Similarity=1.198 Sum_probs=157.5
Q ss_pred cHHHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhH
Q 029453 2 FLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81 (193)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 81 (193)
+|-+|+++.+..++...++++|+++|++|||||||++++.++.+..+.+|.++....+.+++..+.+||+||+..+...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~ 80 (190)
T cd00879 1 FIFDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLW 80 (190)
T ss_pred ChHHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHH
Confidence 46789999999999999999999999999999999999998887777778888888888889999999999999988888
Q ss_pred HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCC
Q 029453 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 82 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
..++..++++++|+|+++.+++.....++..++......+.|+++++||+|+.+....+++...++.......+. ....
T Consensus 81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 159 (190)
T cd00879 81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKG-VSLK 159 (190)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccc-cccc
Confidence 889999999999999999988888888888887655556799999999999987777777877776544221110 1111
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
......+++++|||++|+|++++|+||.+.+
T Consensus 160 ~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 160 VSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred ccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 1122457899999999999999999998764
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=201.88 Aligned_cols=183 Identities=80% Similarity=1.334 Sum_probs=154.5
Q ss_pred HHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhh
Q 029453 5 DWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDY 84 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 84 (193)
|||+.++..++.++++++|+++|++|||||||++++.++.+..+.||.++....+..++..+.+||+||+..+...+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 81 (184)
T smart00178 2 DWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDY 81 (184)
T ss_pred hHHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 79999888666678999999999999999999999999887766778888888888888999999999999999999999
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+..+|++++|+|+++++++.....++..+++.....+.|+++|+||+|++.....+++...++......... ...
T Consensus 82 ~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~-----~~~ 156 (184)
T smart00178 82 FPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKG-----KVG 156 (184)
T ss_pred hCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCccccccc-----ccC
Confidence 999999999999999988888888888877654446899999999999987778888988887665221100 011
Q ss_pred CccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+.+.+++|||++|.|++++++||.+++
T Consensus 157 ~~~~~i~~~Sa~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 157 VRPLEVFMCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred CceeEEEEeecccCCChHHHHHHHHhhC
Confidence 2567899999999999999999998763
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=197.88 Aligned_cols=165 Identities=32% Similarity=0.586 Sum_probs=141.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
..++.+||+++|.+|||||||++++..+.+..+.||.+.+...+.+.+..+.+||+||++++...+..+++++|++|+|+
T Consensus 13 ~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~ 92 (181)
T PLN00223 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 35677999999999999999999999888777778888777777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|+++++++.....++..++......+.|+++++||+|++.....+++...++..... .+.+.++++||
T Consensus 93 D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~------------~~~~~~~~~Sa 160 (181)
T PLN00223 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR------------QRHWYIQSTCA 160 (181)
T ss_pred eCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccC------------CCceEEEeccC
Confidence 999999999888888888765444679999999999998777777777777765410 13456789999
Q ss_pred ecCCChhHHHHhhhhhc
Q 029453 176 VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~l 192 (193)
++|+|++++|+||.+.+
T Consensus 161 ~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNI 177 (181)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=197.42 Aligned_cols=175 Identities=42% Similarity=0.709 Sum_probs=157.6
Q ss_pred HHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhc
Q 029453 7 FYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYA 86 (193)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 86 (193)
|+++.++.....+++||+++|+.||||||+++++..+......||.+.....+.+.+..+.+||.+|+..++..|+.+++
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 45666777677999999999999999999999999888778888999999999999999999999999999999999999
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
++|++|||+|+++.+.+.+....+..++......++|+++++||.|++.....+++...+.+..+. ..+
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~-----------~~~ 149 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLK-----------NKR 149 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTT-----------SSS
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcc-----------cCC
Confidence 999999999999999999999999999887666789999999999998888888888888877632 125
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+.++.|||.+|+|+.+.++||.+++
T Consensus 150 ~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 150 PWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp CEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 68999999999999999999998864
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=192.26 Aligned_cols=162 Identities=33% Similarity=0.590 Sum_probs=136.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
..+.+||+++|++|||||||++++..+.+..+.||.+.....+...+..+.+||+||++++...+..++..+|++++|+|
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D 85 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 85 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence 35679999999999999999999988777766777777766677788999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
++++.++.....++..++......+.|+++|+||+|+......+++.+.++..... ...+.++++||+
T Consensus 86 ~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~SAk 153 (168)
T cd04149 86 SADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIR------------DRNWYVQPSCAT 153 (168)
T ss_pred CCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccC------------CCcEEEEEeeCC
Confidence 99998899988888888765444578999999999997656667777766544310 133578999999
Q ss_pred cCCChhHHHHhhhh
Q 029453 177 RKMGYGEGFKWLSQ 190 (193)
Q Consensus 177 ~~~gi~~~~~~i~~ 190 (193)
+|.|++++|+||.+
T Consensus 154 ~g~gv~~~~~~l~~ 167 (168)
T cd04149 154 SGDGLYEGLTWLSS 167 (168)
T ss_pred CCCChHHHHHHHhc
Confidence 99999999999975
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=192.15 Aligned_cols=164 Identities=34% Similarity=0.626 Sum_probs=137.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
..+++||+++|++|||||||++++..+.+..+.||.+.....+...+..+.+||+||++.+...+..+++.+|++|+|+|
T Consensus 14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D 93 (182)
T PTZ00133 14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVD 93 (182)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 45679999999999999999999988877766778777777777888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++++++.....++..++......++|+++|+||.|+......+++...++...+. .+.+.++++||+
T Consensus 94 ~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~------------~~~~~~~~~Sa~ 161 (182)
T PTZ00133 94 SNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVR------------QRNWYIQGCCAT 161 (182)
T ss_pred CCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCccc------------CCcEEEEeeeCC
Confidence 99999999888888888655444578999999999997666666777776654311 134678899999
Q ss_pred cCCChhHHHHhhhhhc
Q 029453 177 RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 177 ~~~gi~~~~~~i~~~l 192 (193)
+|.|++++|+||.+.+
T Consensus 162 tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 162 TAQGLYEGLDWLSANI 177 (182)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998764
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=192.05 Aligned_cols=163 Identities=32% Similarity=0.583 Sum_probs=137.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
++.+||+++|.+|||||||++++..+.+..+.||.+.......+.+..+.+||+||++.+...+..+++++|++|+|+|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~ 90 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDS 90 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence 56799999999999999999999877776666777776666777889999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++++++.....++..+++.....+.|+++|+||+|+......+++...++..... .+.+.++++||++
T Consensus 91 t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~Sa~~ 158 (175)
T smart00177 91 NDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIR------------DRNWYIQPTCATS 158 (175)
T ss_pred CCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccC------------CCcEEEEEeeCCC
Confidence 9999999999898888765444679999999999997666666777766644310 1346788999999
Q ss_pred CCChhHHHHhhhhhc
Q 029453 178 KMGYGEGFKWLSQYI 192 (193)
Q Consensus 178 ~~gi~~~~~~i~~~l 192 (193)
|.|++++|+||.+.+
T Consensus 159 g~gv~e~~~~l~~~~ 173 (175)
T smart00177 159 GDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998764
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=187.82 Aligned_cols=158 Identities=32% Similarity=0.600 Sum_probs=131.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCCh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 100 (193)
+||+++|.+|||||||++++..+.+..+.||.+.....+......+.+||+||++++...+..+++.+|++++|+|+++.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999887777667777777667778889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCC
Q 029453 101 ERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 180 (193)
.++.....++..++......+.|+++++||+|+......+++...+....+. .+.+.++++||++|.|
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~Sak~g~g 148 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLR------------NRNWYIQATCATSGDG 148 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccC------------CCCEEEEEeeCCCCCC
Confidence 9999998888888765444568999999999997555555665555433210 1345789999999999
Q ss_pred hhHHHHhhhh
Q 029453 181 YGEGFKWLSQ 190 (193)
Q Consensus 181 i~~~~~~i~~ 190 (193)
++++|+||.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999999964
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=189.80 Aligned_cols=167 Identities=36% Similarity=0.600 Sum_probs=138.2
Q ss_pred HHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 12 VSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 12 ~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
.......+.++|+++|++|||||||++++.+.......+|.+.....+.+++..+.+||+||++.+...+..++..+|++
T Consensus 6 ~~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 6 RKQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred hhhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 34455667899999999999999999999988766666777766777778889999999999999888888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
++|+|++++.++.....++..++......+.|+++|+||+|+.+....+++...+..... ....++++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 153 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKI------------SSHHWRIQ 153 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCcccc------------CCCceEEE
Confidence 999999999889888888888876544568999999999999765566666655544321 01347899
Q ss_pred EEeeecCCChhHHHHhhhh
Q 029453 172 MCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~ 190 (193)
++||++|.|++++|+||.+
T Consensus 154 ~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 154 PCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred eccCCCCcCHHHHHHHHhc
Confidence 9999999999999999875
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=186.26 Aligned_cols=162 Identities=34% Similarity=0.590 Sum_probs=136.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
.+.++|+++|++|||||||++++..+.+....+|.+.....+.+.+..+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~ 92 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDS 92 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEEC
Confidence 35789999999999999999999988887777788877778888889999999999999998899999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++++++.....++..+++.....+.|+++++||+|+......+++.+.++..... ...++++++||++
T Consensus 93 s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~------------~~~~~~~~~SA~~ 160 (174)
T cd04153 93 TDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIR------------DHTWHIQGCCALT 160 (174)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccc------------CCceEEEecccCC
Confidence 9998888888888888765444679999999999997655666666666544311 0346899999999
Q ss_pred CCChhHHHHhhhhh
Q 029453 178 KMGYGEGFKWLSQY 191 (193)
Q Consensus 178 ~~gi~~~~~~i~~~ 191 (193)
|.|++++++||.++
T Consensus 161 g~gi~e~~~~l~~~ 174 (174)
T cd04153 161 GEGLPEGLDWIASR 174 (174)
T ss_pred CCCHHHHHHHHhcC
Confidence 99999999999763
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=186.85 Aligned_cols=160 Identities=35% Similarity=0.599 Sum_probs=133.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 101 (193)
||+++|.+|||||||++++.+..+..+.+|.+.....+.+.+..+.+||+||+.++...+..++..+|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 68999999999999999999987766777877777777888899999999999999888889999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCCh
Q 029453 102 RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 181 (193)
++.....++..+++.....+.|+++|+||+|+.+..+.+++...+...... ....+.++++||++|.|+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~g~gv 149 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLC-----------CGRSWYIQGCDARSGMGL 149 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCcccc-----------CCCcEEEEeCcCCCCCCH
Confidence 999999999998765444568999999999997666666665555332200 012357889999999999
Q ss_pred hHHHHhhhhhc
Q 029453 182 GEGFKWLSQYI 192 (193)
Q Consensus 182 ~~~~~~i~~~l 192 (193)
+++|+||.+.+
T Consensus 150 ~~~f~~l~~~~ 160 (169)
T cd04158 150 YEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-31 Score=184.53 Aligned_cols=161 Identities=32% Similarity=0.499 Sum_probs=135.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 101 (193)
+|+++|++|||||||++++.+.....+.+|.+.....+...+..+.+||+||++++...+..++.++|++++|+|+++..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 48999999999999999999774445677877777788888999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecC---
Q 029453 102 RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRK--- 178 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--- 178 (193)
++.....++..+.+.....++|+++|+||+|+....+..++.+.+....+. ......+.+++|||++|
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~---------~~~~~~~~~~~~Sa~~g~~~ 151 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLV---------NENKSLCHIEPCSAIEGLGK 151 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCccccc---------CCCCceEEEEEeEceeCCCC
Confidence 999999999988765444689999999999998777777777777655421 11124578999999998
Q ss_pred ---CChhHHHHhhhhh
Q 029453 179 ---MGYGEGFKWLSQY 191 (193)
Q Consensus 179 ---~gi~~~~~~i~~~ 191 (193)
.|+.+.|+||.++
T Consensus 152 ~~~~g~~~~~~wl~~~ 167 (167)
T cd04161 152 KIDPSIVEGLRWLLAA 167 (167)
T ss_pred ccccCHHHHHHHHhcC
Confidence 8999999999753
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=180.03 Aligned_cols=157 Identities=38% Similarity=0.681 Sum_probs=127.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 101 (193)
||+++|++|||||||++++..+.+..+.+|.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998877766667777666677778899999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCCh
Q 029453 102 RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 181 (193)
++.....++..+++.....+.|+++|+||+|+.+.....++...+....+. ....+++++||++|.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELK------------DRTWSIFKTSAIKGEGL 148 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccC------------CCcEEEEEeeccCCCCH
Confidence 777777777766654444579999999999997655555555555433210 02357999999999999
Q ss_pred hHHHHhhhh
Q 029453 182 GEGFKWLSQ 190 (193)
Q Consensus 182 ~~~~~~i~~ 190 (193)
+++|++|.+
T Consensus 149 ~~l~~~l~~ 157 (158)
T cd04151 149 DEGMDWLVN 157 (158)
T ss_pred HHHHHHHhc
Confidence 999999975
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=177.10 Aligned_cols=193 Identities=78% Similarity=1.280 Sum_probs=181.5
Q ss_pred CcHHHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHh
Q 029453 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
||+.+||+.++..+.++++.-|++++|--|||||||++.+..++.....||-.|+.+.+.+++..+...|.+||...++.
T Consensus 1 ~fl~ewF~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~ 80 (193)
T KOG0077|consen 1 SFLFEWFSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRV 80 (193)
T ss_pred CcHHHHHHHHHHHHHHhccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccC
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
|..|+..+|++++++|+.+.+++.+....++.++......+.|+++.+||+|.+.+...++++..+++..+.+.++..+.
T Consensus 81 wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~ 160 (193)
T KOG0077|consen 81 WKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNL 160 (193)
T ss_pred HHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999998877789999999999999999999999999999998877776666
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
.....+...+++||...+.|.-+.|.|+.+++.
T Consensus 161 ~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi~ 193 (193)
T KOG0077|consen 161 TDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
T ss_pred cCCCCCeEEEEEEEEEccCccceeeeehhhhcC
Confidence 667778899999999999999999999988763
|
|
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-30 Score=182.37 Aligned_cols=163 Identities=33% Similarity=0.529 Sum_probs=128.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe-----CCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSI-----GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
+.+||+++|.+|||||||++++..+.+....+|.+........ .+..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988877666666655444333 35789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|+++++++.....++..+.......+.|+++|+||+|+......+++...++..... ....++++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 150 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELS-----------ASTPWHVQPA 150 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccC-----------CCCceEEEEe
Confidence 99999998888888887777654444679999999999997655555555444422210 0123678999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|+++++++|.+.+
T Consensus 151 SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 151 CAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred ecccCCCHHHHHHHHHHHH
Confidence 9999999999999998754
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-30 Score=171.91 Aligned_cols=173 Identities=34% Similarity=0.566 Sum_probs=154.5
Q ss_pred HHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccC
Q 029453 9 GILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKV 88 (193)
Q Consensus 9 ~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (193)
+...++...+++++|.++|..||||||+++++.+.......||.+.+..+..+++..+.+||.+||...++.|..|+...
T Consensus 5 silrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfest 84 (185)
T KOG0073|consen 5 SILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFEST 84 (185)
T ss_pred HHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhcc
Confidence 34456666778999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|++|+|+|.+++.++++-...+..++......+.|++++.||.|++.+...+++...+++..+. ....+
T Consensus 85 dglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~-----------ks~~~ 153 (185)
T KOG0073|consen 85 DGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA-----------KSHHW 153 (185)
T ss_pred CeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhc-----------cccCc
Confidence 9999999999999999999999999887777889999999999999888888887777665521 11458
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++.||+.+|+++.+.++||.+.+
T Consensus 154 ~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 154 RLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred eEEEEeccccccHHHHHHHHHHHH
Confidence 999999999999999999998754
|
|
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=178.37 Aligned_cols=158 Identities=36% Similarity=0.619 Sum_probs=128.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC-CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCCh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 100 (193)
+|+++|++|||||||++++.++.+....+|.+.....+... ...+.+||+||++.+...+..++..+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 58999999999999999999998876677776665555553 47899999999999988888899999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCC
Q 029453 101 ERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 180 (193)
.++.....++..+++.....+.|+++|+||+|+......+++...++...+. ....+++++|||++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~g 149 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYC-----------SDRDWYVQPCSAVTGEG 149 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccC-----------CCCcEEEEecccccCCC
Confidence 8888888888888765444689999999999997555566666555433211 01346799999999999
Q ss_pred hhHHHHhhhh
Q 029453 181 YGEGFKWLSQ 190 (193)
Q Consensus 181 i~~~~~~i~~ 190 (193)
++++|++|.+
T Consensus 150 v~~~~~~i~~ 159 (160)
T cd04156 150 LAEAFRKLAS 159 (160)
T ss_pred hHHHHHHHhc
Confidence 9999999865
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=177.60 Aligned_cols=158 Identities=34% Similarity=0.624 Sum_probs=126.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc-c-ccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL-V-QHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD 99 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 99 (193)
+|+++|++|||||||++++.+... . ...+|.+.....+...+..+.+|||||++++...+..+++.+|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 2 45567776666667788899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec
Q 029453 100 KERFSESKRELDALLSDEA--LADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177 (193)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
+.++.....++..+.+... ..++|+++|+||+|+.+.....++...++.... ....+.++++||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~------------~~~~~~~~~~Sa~~ 148 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENI------------KDKPWHIFASNALT 148 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccc------------cCceEEEEEeeCCC
Confidence 9888888888877765432 257999999999999765555555555543321 01235799999999
Q ss_pred CCChhHHHHhhhhh
Q 029453 178 KMGYGEGFKWLSQY 191 (193)
Q Consensus 178 ~~gi~~~~~~i~~~ 191 (193)
|.|++++|+||.++
T Consensus 149 g~gv~~~~~~l~~~ 162 (162)
T cd04157 149 GEGLDEGVQWLQAQ 162 (162)
T ss_pred CCchHHHHHHHhcC
Confidence 99999999999764
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-30 Score=177.89 Aligned_cols=160 Identities=39% Similarity=0.620 Sum_probs=128.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc-------cccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL-------VQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+|+++|++|||||||++++.+... ....+|.+.....+.+++..+.+||+||++.+...+..++..+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999975432 1234566667777888899999999999999998888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+|+++++++.....++..+.+.....+.|+++++||+|+.+.....+....+...... .....++++++|
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~S 150 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEE----------IGRRDCLVLPVS 150 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhcccccc----------ccCCceEEEEee
Confidence 9999988888888888888765555689999999999997766656655554433200 011346899999
Q ss_pred eecCCChhHHHHhhhhh
Q 029453 175 IVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~ 191 (193)
|++|.|++++++||.++
T Consensus 151 a~~g~gv~e~~~~l~~~ 167 (167)
T cd04160 151 ALEGTGVREGIEWLVER 167 (167)
T ss_pred CCCCcCHHHHHHHHhcC
Confidence 99999999999999764
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=175.30 Aligned_cols=158 Identities=39% Similarity=0.659 Sum_probs=135.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 101 (193)
||+++|.+|||||||++++.+.......+|.+.....+.+....+.+||+||++.+...+..+++.+|++++|+|+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998666777888777788888899999999999999989999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCCh
Q 029453 102 RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 181 (193)
++.....++..+.......+.|+++++||+|+......+++...++.... ....++++++||++|.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKI------------LGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhc------------cCCcEEEEEeeCCCCCCH
Confidence 89998888888876555568999999999999866666666666554420 114578999999999999
Q ss_pred hHHHHhhhhh
Q 029453 182 GEGFKWLSQY 191 (193)
Q Consensus 182 ~~~~~~i~~~ 191 (193)
+++|++|.++
T Consensus 149 ~~~~~~l~~~ 158 (158)
T cd00878 149 DEGLDWLLQQ 158 (158)
T ss_pred HHHHHHHhhC
Confidence 9999999753
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=176.75 Aligned_cols=164 Identities=35% Similarity=0.621 Sum_probs=135.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
...+.++|+++|++|||||||++++.+..+....+|.+.....+...+..+.+||+||+..+...+..+++.+|++++|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 34568999999999999999999999887766667777777777888899999999999988888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|+++..++.....++..+.......++|+++++||+|+......+++.+.++..... .+.+.++++||
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~------------~~~~~~~~~Sa 157 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLR------------DRTWHIQACSA 157 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccC------------CCeEEEEEeEC
Confidence 999988888878777777655444679999999999997666666777666554311 13467899999
Q ss_pred ecCCChhHHHHhhhhh
Q 029453 176 VRKMGYGEGFKWLSQY 191 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~ 191 (193)
++|+|++++++||.++
T Consensus 158 ~~~~gi~~~~~~l~~~ 173 (173)
T cd04155 158 KTGEGLQEGMNWVCKN 173 (173)
T ss_pred CCCCCHHHHHHHHhcC
Confidence 9999999999999763
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=176.52 Aligned_cols=161 Identities=22% Similarity=0.311 Sum_probs=129.1
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCC
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVD 89 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d 89 (193)
+...+.+||.++|.+|+|||+|+.++..+.+.. +..|.+... ..+.+. ...+.+|||+||++|+.....++++++
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 446788999999999999999999999999884 455666543 344444 468999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
++|+|+|+++.++|..+..|+.++- .....+.|.++|+||+|+. +....++.+....... .
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~-~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~----------------~ 146 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEID-RYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELG----------------I 146 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhh-hhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcC----------------C
Confidence 9999999999999999999999995 4555778999999999997 3344443322211111 1
Q ss_pred EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++++||+++.|+++.|..|...+
T Consensus 147 ~~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 147 PIFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred cceeecccCCccCHHHHHHHHHHHH
Confidence 1279999999999999999987654
|
|
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=175.71 Aligned_cols=157 Identities=21% Similarity=0.336 Sum_probs=130.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...+|++++|..++|||||+-|+..+.+... .+|.+... ..+..++ ..+.+|||+|+++|.++-+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4678999999999999999999999999874 67776543 3444444 78889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++.++|..+..|..++.+... +++-+.+|+||+||.. ..+.++....-...- ..+
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~g-----------------ll~ 144 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQG-----------------LLF 144 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcC-----------------CEE
Confidence 99999999999999999999976543 6777888999999973 555555433333222 477
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++|||+|+|++++|..|.+.+
T Consensus 145 ~ETSAKTg~Nv~~if~~Ia~~l 166 (200)
T KOG0092|consen 145 FETSAKTGENVNEIFQAIAEKL 166 (200)
T ss_pred EEEecccccCHHHHHHHHHHhc
Confidence 9999999999999999998765
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=178.94 Aligned_cols=157 Identities=15% Similarity=0.291 Sum_probs=123.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
....+||+++|..|||||||++++..+.+... .++.+.. ...+..++ ..+.+||++|++.+..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 34568999999999999999999998877643 3344332 23444554 6789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|+++++++..+..|+..+.... ++.|+++|+||+|+.. ..+.++....... ..+.
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~-----------------~~~~ 143 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAER-----------------NGMT 143 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHHH-----------------cCCE
Confidence 99999999999999999999985532 5899999999999963 3344333222211 2257
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++|||++|.|++++|++|.+.+
T Consensus 144 ~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 144 FFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998643
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-30 Score=181.85 Aligned_cols=155 Identities=18% Similarity=0.297 Sum_probs=120.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+.|+++|.+|||||||++++..+.+.. +.+|.+.. ...+.+++ ..+.+|||+|++++..++..+++++|++|+|+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 368999999999999999999988864 34455433 34455655 77899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++++++.+..|+..+. .....+.|+++|+||+|+.. ....++.. .+.... ..+.++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~-~~~~~~~piilVgNK~DL~~~~~v~~~~~~-~~a~~~---------------~~~~~~et 143 (202)
T cd04120 81 DITKKETFDDLPKWMKMID-KYASEDAELLLVGNKLDCETDREISRQQGE-KFAQQI---------------TGMRFCEA 143 (202)
T ss_pred ECcCHHHHHHHHHHHHHHH-HhCCCCCcEEEEEECcccccccccCHHHHH-HHHHhc---------------CCCEEEEe
Confidence 9999999999988887654 33446799999999999963 22222221 111110 12478999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|++|.+.+
T Consensus 144 SAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 144 SAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998653
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=176.98 Aligned_cols=157 Identities=19% Similarity=0.274 Sum_probs=121.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+.+||+++|.+|||||||++++..+.+.. +.+|.+... ..+..++ ..+.+|||||++.+..++..++..+|++++|
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 35799999999999999999999988863 445554333 2344444 6789999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++++.++.....|+..+.......+.|+++|+||+|+... .+.++..... .. ..+++++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a-~~----------------~~~~~~e 143 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLA-RE----------------FNCPFFE 143 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHH-HH----------------hCCEEEE
Confidence 999999999998887766654333467999999999998632 2222221111 00 2257899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
|||++|.|++++|++|.+.+
T Consensus 144 ~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 144 TSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred EecCCCCCHHHHHHHHHHHH
Confidence 99999999999999998653
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=175.71 Aligned_cols=156 Identities=19% Similarity=0.265 Sum_probs=122.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
++||+++|.+|||||||++++..+.+.. ..+|.+.. ...+..++ ..+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 4799999999999999999999887654 33444432 23445553 56779999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|.++..++.....|+..+.+.....+.|+++|+||+|+.... ..++.. .+... ..++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~----------------~~~~~~~~ 143 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQ-NLARQ----------------WGCAFLET 143 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHH-HHHHH----------------hCCEEEEe
Confidence 999999999999999988765555789999999999997422 222211 11111 12478999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|.+|.+++
T Consensus 144 Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 144 SAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998765
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=176.41 Aligned_cols=153 Identities=19% Similarity=0.333 Sum_probs=119.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEEe----CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELSI----GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++..+.+. ...+|.+.......+ ....+.+|||+|++.+......++..+|++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999877765 345565544433332 3468999999999988888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|++++++++.+..|+..+.+.. .+.|+++|+||+|+.......+...... . ..++++++||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~--~---------------~~~~~~e~Sa 141 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQITFHR--K---------------KNLQYYEISA 141 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHHHHH--H---------------cCCEEEEEeC
Confidence 9999999999988888886543 2799999999999973322222111111 0 2357999999
Q ss_pred ecCCChhHHHHhhhhhc
Q 029453 176 VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~l 192 (193)
++|.|++++|++|.+.+
T Consensus 142 ~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 142 KSNYNFEKPFLWLARKL 158 (166)
T ss_pred CCCCChHHHHHHHHHHH
Confidence 99999999999998754
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=176.51 Aligned_cols=156 Identities=19% Similarity=0.270 Sum_probs=120.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
++||+++|++|||||||++++..+.+.. ..+|.... ...+..++ ..+.+|||||++++...+..+++.+|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 4799999999999999999999888764 33444322 23444554 56788999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++. ..+... ...+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~----------------~~~~~~~~ 143 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEG-QALARQ----------------WGCPFYET 143 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHH-HHHHHH----------------cCCeEEEe
Confidence 99999999999888888876554568999999999998632 222211 111111 11578999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|++|.+.+
T Consensus 144 Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 144 SAKSKINVDEVFADLVRQI 162 (163)
T ss_pred cCCCCCCHHHHHHHHHHhc
Confidence 9999999999999998764
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=176.20 Aligned_cols=157 Identities=17% Similarity=0.233 Sum_probs=120.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEe------------CCeEEEEEEcCChhhhHHhHH
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSI------------GKIKFKAFDLGGHQMARRVWK 82 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~------------~~~~~~~~D~~g~~~~~~~~~ 82 (193)
++.+||+++|++|||||||++++.++.+.. ..+|.+... ..+.+ ....+.+||+||++++...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 356899999999999999999999888764 344444322 22322 236789999999999999999
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccC
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
.+++++|++++|+|+++++++..+..|+..+.......+.|+++|+||+|+.. ....++... +...
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~-~~~~----------- 149 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKA-LADK----------- 149 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHH-HHHH-----------
Confidence 99999999999999999999999999988886544345789999999999963 223322211 1111
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
..++++++||++|.|++++|++|.+.
T Consensus 150 -----~~~~~~e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 150 -----YGIPYFETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred -----cCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 11468999999999999999999864
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=174.94 Aligned_cols=157 Identities=18% Similarity=0.266 Sum_probs=121.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
++||+++|++|||||||++++.++.+.. ..+|.+.. ...+..++ ..+.+||+||++++..++..+++.++++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 3699999999999999999999888753 33444332 22334444 45788999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
|++++.++.....|+..+.+.....+.|+++|+||+|+... ....+....... ..++++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~S 143 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKS-----------------YGIPYIETS 143 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHH-----------------hCCeEEEec
Confidence 99999999988888888876544568999999999999742 222232222111 124789999
Q ss_pred eecCCChhHHHHhhhhhcC
Q 029453 175 IVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l~ 193 (193)
|++|.|++++|++|.+.++
T Consensus 144 a~~~~gi~~l~~~l~~~~~ 162 (162)
T cd04138 144 AKTRQGVEEAFYTLVREIR 162 (162)
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999999999999987653
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-29 Score=173.02 Aligned_cols=155 Identities=30% Similarity=0.475 Sum_probs=127.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh
Q 029453 23 ILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 101 (193)
|+++|++|||||||++++.+..+. .+.||.+.....+..++..+.+||+||++.+...+..+++.+|++++|+|++++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 789999999999999999988665 4556777666667778899999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec----
Q 029453 102 RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR---- 177 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---- 177 (193)
++.....++..+.... .++|+++|+||+|+......+++...++...+.. ...+.++++||++
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~s~ 148 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIAR-----------GRRWILQGTSLDDDGSP 148 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcC-----------CCceEEEEeeecCCCCh
Confidence 8888888888886432 6899999999999986666666666665544211 1346788888888
Q ss_pred --CCChhHHHHhhhh
Q 029453 178 --KMGYGEGFKWLSQ 190 (193)
Q Consensus 178 --~~gi~~~~~~i~~ 190 (193)
++|++++|+.++.
T Consensus 149 ~~~~~v~~~~~~~~~ 163 (164)
T cd04162 149 SRMEAVKDLLSQLIN 163 (164)
T ss_pred hHHHHHHHHHHHHhc
Confidence 9999999998864
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=179.42 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=122.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
+..+||+++|.+|||||||++++.++.+. ...+|.+... ..+..+ ...+.+|||||++++..++..+++.++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 45789999999999999999999988876 3445554332 233343 3568899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++.....|+..+.+.....+.|+++|+||+|+... ....+...... . ..++++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~-~----------------~~~~~~ 145 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAK-S----------------FGIPFL 145 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-H----------------hCCEEE
Confidence 9999999999999998888876544468999999999998632 22222211111 1 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 146 e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 146 ETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred EeeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998654
|
|
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=173.06 Aligned_cols=162 Identities=19% Similarity=0.261 Sum_probs=130.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce--eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS--EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
...+.+|++|+|..++|||||+++++.+.+. .+.+|.+..- .++.+. ...+.+|||.||++|+.+.+.|++++.+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 3457799999999999999999999999988 4566777543 344444 4678999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+|+++..+|+...+|+..+.+..+..+.-+++|+||.||....+. ....+.... +. -...+
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv---s~eEg~~kA---ke---------l~a~f 162 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV---SIEEGERKA---KE---------LNAEF 162 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhh---hHHHHHHHH---HH---------hCcEE
Confidence 9999999999999999999999998877667889999999999743222 222221110 00 12478
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||+.|+|++++|..|...+
T Consensus 163 ~etsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 163 IETSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred EEecccCCCCHHHHHHHHHHhc
Confidence 9999999999999999987654
|
|
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=179.13 Aligned_cols=156 Identities=18% Similarity=0.235 Sum_probs=121.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC---CeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG---KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+||+++|++|||||||++++.++.+.. +.+|.+.. ...+..+ ...+.+|||||++.+...+..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999888764 45565533 2334443 46789999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 95 IDAYDKERFSESKRELDALLSDE---ALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
+|+++++++..+..|+..+.... ...+.|+++|+||+|+. +....+++....... ....
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~ 144 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----------------GFIG 144 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----------------CCce
Confidence 99999999999988887765422 23578999999999996 334444433222111 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 145 ~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 145 WFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=180.38 Aligned_cols=165 Identities=21% Similarity=0.250 Sum_probs=124.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCCh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 100 (193)
+||+++|.+|||||||++++..+.+....+|.+.......+....+.+|||+|++.+...+..++..+|++|+|+|++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987666777666555556678899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC---------------------CCHHH---HHHhhCCCccccCCC
Q 029453 101 ERFSESKRELDALLSDEALADVPFLILGNKIDIPYA---------------------ASEDE---LRYHMGLTNFTTGKG 156 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~---------------------~~~~~---~~~~~~~~~~~~~~~ 156 (193)
+++..+..|+..+... ...+.|+++|+||+|+... .+.++ +.+..+.... .
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~----~ 155 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM----L 155 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc----c
Confidence 9999999888887653 3357999999999999641 11111 1111110000 0
Q ss_pred cccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++.. ....++++|||++|.||+++|+.+.+.+
T Consensus 156 ~~~~~~--~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 156 DEDLSP--AAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred cccccc--cccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 000000 1225799999999999999999998653
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=180.21 Aligned_cols=170 Identities=16% Similarity=0.261 Sum_probs=120.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccee-EEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSE-ELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+.+||+++|.+|||||||+.++..+.+. .+.||.+.... .+..+ ...+.+|||+|++++..++..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 4689999999999999999999998885 45566654322 22333 36789999999999999999999999999999
Q ss_pred EeCCChhhHHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 95 IDAYDKERFSESKR-ELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 95 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+|++++++|+.+.. |+..+.. . ..+.|+++|+||+||.......+............. .....+. ....+.++++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~-~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~-~~~~~a~-~~~~~~~~e~ 157 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCH-H-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQ-QGGALAK-QIHAVKYLEC 157 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-h-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHH-HHHHHHH-HcCCcEEEEe
Confidence 99999999999864 6655543 2 257999999999999643221111111111110000 0000000 0123589999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|+|++++|++|.+.+
T Consensus 158 SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 158 SALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998653
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-30 Score=172.73 Aligned_cols=167 Identities=33% Similarity=0.594 Sum_probs=155.0
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
....+++.+|.++|--+|||||++.++..++...+.||.+.+.+.+.+.+..+.+||.+|+++++..|++|+++.+++||
T Consensus 11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf 90 (181)
T KOG0070|consen 11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIF 90 (181)
T ss_pred hccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence 34688999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|.+|++++.+....+..++......+.|+++..||.|++.+-+..++.+.+++..+.. +.+.+..|
T Consensus 91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~------------~~w~iq~~ 158 (181)
T KOG0070|consen 91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS------------RNWHIQST 158 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCC------------CCcEEeec
Confidence 999999999999999999999887778999999999999998888889988888777321 66899999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
+|.+|+|+.|.++||.+.+
T Consensus 159 ~a~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 159 CAISGEGLYEGLDWLSNNL 177 (181)
T ss_pred cccccccHHHHHHHHHHHH
Confidence 9999999999999998765
|
|
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-29 Score=173.15 Aligned_cols=155 Identities=25% Similarity=0.375 Sum_probs=120.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.++.+.. +.+|.+... ..+..+ ...+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988764 344544332 233333 468889999999999988899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCC----CCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 96 DAYDKERFSESKRELDALLSDEAL----ADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~----~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
|+++++++.....|+..+...... .+.|+++|+||+|+.+ ....++...... . ...+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~ 143 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-S----------------KGFK 143 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-H----------------cCCe
Confidence 999999999998888888664432 5799999999999963 223333222111 1 1146
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 144 ~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 144 YFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=167.95 Aligned_cols=156 Identities=35% Similarity=0.586 Sum_probs=128.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh
Q 029453 23 ILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 101 (193)
|+++|++|||||||++++.+.++. .+.+|.+.....+..++..+.+||+||+..+...+..++..+|++++|+|+++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 799999999999999999998876 4556777766677778889999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCCh
Q 029453 102 RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 181 (193)
++.....++..+.......++|+++|+||+|+.......++...++.... ....++++++|+++|.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSI------------TDREVSCYSISCKEKTNI 149 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccc------------cCCceEEEEEEeccCCCh
Confidence 88888888888776554568999999999999765555555555543331 013468899999999999
Q ss_pred hHHHHhhhh
Q 029453 182 GEGFKWLSQ 190 (193)
Q Consensus 182 ~~~~~~i~~ 190 (193)
++++++|.+
T Consensus 150 ~~l~~~l~~ 158 (159)
T cd04159 150 DIVLDWLIK 158 (159)
T ss_pred HHHHHHHhh
Confidence 999999975
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=172.67 Aligned_cols=157 Identities=17% Similarity=0.266 Sum_probs=120.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
.+||+++|++|+|||||++++.++.+.. ..++.... ......++ ..+.+|||||++++..++..+++.+|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 4799999999999999999999887653 33343322 22333444 56889999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++.++.....|+..+.+.....+.|+++++||+|+.... ..++...... . ...+++++
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~~ 144 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-K----------------LKIPYIET 144 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-H----------------cCCcEEEe
Confidence 999999999999988888765444679999999999996432 2222211111 0 11368999
Q ss_pred eeecCCChhHHHHhhhhhcC
Q 029453 174 SIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l~ 193 (193)
||++|.|++++|++|.+.++
T Consensus 145 Sa~~~~~i~~l~~~l~~~~~ 164 (164)
T cd04145 145 SAKDRLNVDKAFHDLVRVIR 164 (164)
T ss_pred eCCCCCCHHHHHHHHHHhhC
Confidence 99999999999999987753
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-29 Score=172.91 Aligned_cols=155 Identities=18% Similarity=0.257 Sum_probs=120.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQ-PTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
.+||+++|++|||||||++++.++.+.... +|.+... ..+..++ ..+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 379999999999999999999998876543 3444332 2334443 5789999999999999888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++++++++.+..|+..+... ..++.|+++|+||+|+... ...++....... ..+++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e 143 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADE-----------------NGLLFLE 143 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHH-----------------cCCEEEE
Confidence 9999999999999998877543 3357899999999999633 233333222111 1257899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|++++|+++...+
T Consensus 144 ~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 144 CSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999988654
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=171.34 Aligned_cols=157 Identities=21% Similarity=0.280 Sum_probs=121.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCC--cceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQY--PTSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
+.+||+++|++|||||||++++.++.+... .++.+ .....+..++ ..+.+||+||++.+......++..+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 458999999999999999999998876643 33443 2334455555 578999999999999888889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++++++.+..|+..+... ...+.|+++|+||+|+... ...++...... .. +...++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~---------------~~~~~~ 144 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAE-KN---------------GMLAVL 144 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH-Hc---------------CCcEEE
Confidence 99999999999988888888643 3457999999999999632 22222222111 11 224689
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|+++++++|.+.+
T Consensus 145 e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 145 ETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred EEECCCCCCHHHHHHHHHHhC
Confidence 999999999999999998754
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=172.94 Aligned_cols=155 Identities=21% Similarity=0.291 Sum_probs=119.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+||+++|++|||||||++++.+..+.. ..+|.... ...+..++ ..+.+|||||++++...+..+++.++++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999887664 33333321 23333443 578899999999999988899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+++++++.....|+..+.+.....+.|+++|+||+|+.... ..++...... . ...+++++|
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~~S 143 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELAR-Q----------------WGCPFLETS 143 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHH-H----------------cCCEEEEee
Confidence 99999999998888887765555679999999999996422 2222211111 1 114789999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|++|.|++++|++|.+.+
T Consensus 144 a~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 144 AKERVNVDEAFYDLVREI 161 (164)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=178.93 Aligned_cols=156 Identities=18% Similarity=0.316 Sum_probs=123.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEE--e--CCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELS--I--GKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
....+||+++|.+|||||||++++..+.+. .+.+|.+....... . ....+.+|||+|++.+...+..+++.++++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 367899999999999999999999888876 34566665443333 2 347899999999999999888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
|+|+|+++++++.....|+..+... ..+.|+++|+||+|+... ...+++ .+. . ...+.+
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~--~~~--~--------------~~~~~~ 149 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV--TFH--R--------------KKNLQY 149 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH--HHH--H--------------hcCCEE
Confidence 9999999999999999998888643 257999999999999632 222222 110 0 023578
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|.|++++|+||.+.+
T Consensus 150 ~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 150 YEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred EEcCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
|
|
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=173.90 Aligned_cols=156 Identities=18% Similarity=0.259 Sum_probs=120.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCC-cceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQY-PTSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
++||+++|.+|||||||++++..+.+... .+|.. .....+..++ ..+.+|||||++++...+..++.++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999998887643 33432 1223444444 46789999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++.....|+..+.......++|+++|+||+|+.+.. ...+ ...+... ..++++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~-~~~~~~~----------------~~~~~~~~ 143 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAE-GRALAEE----------------WGCPFMET 143 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHH-HHHHHHH----------------hCCEEEEe
Confidence 999999999999888888765545689999999999986322 2211 1111111 12478999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|++|.+.+
T Consensus 144 Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 144 SAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred cCCCCCCHHHHHHHHHHhc
Confidence 9999999999999998765
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=169.79 Aligned_cols=156 Identities=21% Similarity=0.278 Sum_probs=122.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
..+||+++|++|||||||++++.++.+.. +.+|.+... ..+..++ ..+.+||+||++.+......+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 35899999999999999999999988764 344544332 3344444 578999999999998888889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++..+..|+..+... ...+.|+++|+||+|+.. ....++....... ..++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 143 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADE-----------------YGIKFL 143 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEE
Confidence 99999999999999988887643 335789999999999973 2233333222211 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+++
T Consensus 144 ~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 144 ETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=173.33 Aligned_cols=167 Identities=20% Similarity=0.283 Sum_probs=118.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccee-EEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSE-ELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+||+++|.+|||||||++++..+.+. .+.||.+.... .+..++ ..+.+|||+|++++...+..++..+|++++|+|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 68999999999999999999998885 45566654332 445555 678899999999998888888999999999999
Q ss_pred CCChhhHHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 97 AYDKERFSESKR-ELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
+++++++..... |+..+... . .+.|+++|+||+|+.......+............ ......+. ....+.+++|||
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~-~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~-~~~~~~a~-~~~~~~~~e~SA 157 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH-C-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITP-ETGEKLAR-DLKAVKYVECSA 157 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCH-HHHHHHHH-HhCCcEEEEecC
Confidence 999999998864 66555432 2 5799999999999864322111111110000000 00000000 012368999999
Q ss_pred ecCCChhHHHHhhhhh
Q 029453 176 VRKMGYGEGFKWLSQY 191 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~ 191 (193)
++|.|++++|+.++..
T Consensus 158 ~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 158 LTQKGLKNVFDEAILA 173 (175)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999998764
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=168.17 Aligned_cols=153 Identities=18% Similarity=0.292 Sum_probs=119.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.++.+.. ..+|.+... ..+..++ ..+.+||++|++.+......++..+|++++|+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 489999999999999999999888764 455655433 3455554 57889999999999988889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++.....|+..+... ...+.|+++|+||+|+... ...++..... .. ..++++++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~-~~----------------~~~~~~e~ 142 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLA-KE----------------YGMDFFET 142 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHH-HH----------------cCCEEEEE
Confidence 999999999999988877543 3347999999999998632 2222221111 11 11468999
Q ss_pred eeecCCChhHHHHhhhhh
Q 029453 174 SIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~ 191 (193)
||++|.|++++|++|.+.
T Consensus 143 Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 143 SACTNSNIKESFTRLTEL 160 (161)
T ss_pred eCCCCCCHHHHHHHHHhh
Confidence 999999999999999865
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=168.82 Aligned_cols=155 Identities=21% Similarity=0.333 Sum_probs=122.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
++||+++|++|||||||++++.++++.. ..++.+.. ...+.++ ...+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999998775 55555532 2344444 36789999999999988888889999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+++++++.....|+..+..... .+.|+++++||+|+.. ....++...... .. ...+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~----------------~~~~~~ 142 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-EN----------------GLLFFE 142 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-Hc----------------CCEEEE
Confidence 999999999999999888865543 6799999999999873 223333222211 11 147899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|+++++++|.+++
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 143 TSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999998875
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=168.80 Aligned_cols=154 Identities=19% Similarity=0.289 Sum_probs=118.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.++++.. +.+|.+... ..+..+ ...+.+||+||++++...+..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 699999999999999999999988764 345554322 233333 367999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++..+..|+..+.. ....+.|+++|+||+|+.+.. ..++..+.... ..++++++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 143 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKT-YSWDNAQVILVGNKCDMEDERVVSSERGRQLADQ-----------------LGFEFFEA 143 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHH-hCCCCCCEEEEEECcccCcccccCHHHHHHHHHH-----------------cCCEEEEE
Confidence 99999999999888888753 333578999999999996432 22222111110 11368999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|++|.+.+
T Consensus 144 Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 144 SAKENINVKQVFERLVDII 162 (165)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-28 Score=169.19 Aligned_cols=159 Identities=19% Similarity=0.275 Sum_probs=122.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...+||+++|++|||||||++++.++.+.. ..++.+.. ...+..+ ...+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 356899999999999999999999888764 33444433 2233443 357889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCC---CCCCcEEEEeeCCCCCC-CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEA---LADVPFLILGNKIDIPY-AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~pviiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+|+|++++++++.+..|...+..... ..+.|+++|+||+|+.. ....++..+.... . ..+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~---------------~~~ 146 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE-N---------------GDY 146 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH-C---------------CCC
Confidence 99999999999998888887765332 24689999999999963 3344443332211 1 224
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|++++|+++.+.+
T Consensus 147 ~~~e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 147 PYFETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 789999999999999999998753
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=173.46 Aligned_cols=169 Identities=21% Similarity=0.309 Sum_probs=119.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
.+.++||+++|.+|+|||||++++..+.+.. +.||.+... ..+..+ ...+.+|||+|++++..+...+++.+|+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4567899999999999999999999988764 455655332 233343 367999999999999999899999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHHhhC-CCccccCCCcccCCCCCCccEE
Q 029453 93 YLIDAYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIPYAASE-DELRYHMG-LTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
+|+|++++++|..+ ..|+..+... . ++.|+++|+||+|+...... .++..... ....+.+. ..+. ......
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~-~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~---~~a~-~~~~~~ 155 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEF-C-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGA---NMAK-QIGAAT 155 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH-C-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHH---HHHH-HcCCCE
Confidence 99999999999997 6777776543 2 57999999999998532100 00000000 00000000 0000 001247
Q ss_pred EEEEeeecCCC-hhHHHHhhhhh
Q 029453 170 VFMCSIVRKMG-YGEGFKWLSQY 191 (193)
Q Consensus 170 ~~~~Sa~~~~g-i~~~~~~i~~~ 191 (193)
+++|||++|.| ++++|+.+...
T Consensus 156 ~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 156 YIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred EEECCcCCCCCCHHHHHHHHHHH
Confidence 89999999998 99999988763
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-29 Score=161.40 Aligned_cols=172 Identities=34% Similarity=0.612 Sum_probs=155.1
Q ss_pred HHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHH
Q 029453 4 VDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWK 82 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (193)
+.|+.+. +++.+..+.++|-.+||||||+|.+..+.+. ..-||.+.+...++-++..+.+||.||+..++.+|.
T Consensus 9 L~wi~~~-----f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWe 83 (186)
T KOG0075|consen 9 LVWICNS-----FWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 83 (186)
T ss_pred HHHHHHH-----HHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHH
Confidence 4555554 4788999999999999999999999987776 457899999999999999999999999999999999
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCC
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
.|...+++++||+|+++++.+......+..++......++|+++.+||.|++.+-...++...+++.....
T Consensus 84 rycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitd--------- 154 (186)
T KOG0075|consen 84 RYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITD--------- 154 (186)
T ss_pred HHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCcccccc---------
Confidence 99999999999999999999999999999999988889999999999999998889999999999877321
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+.+-.+.+|+++..|++.+.+||.++.
T Consensus 155 ---REvcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 155 ---REVCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred ---ceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence 567789999999999999999998764
|
|
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-29 Score=173.65 Aligned_cols=153 Identities=16% Similarity=0.246 Sum_probs=117.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+||+++|.+|+|||||+.++..+.+. .+.+|.+... ..+..+ ...+.+|||+|++++..+...+++.++++|+|+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 58999999999999999999999887 4556665433 223333 3678999999999999988899999999999999
Q ss_pred CCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC------------CHHHHHHhhCCCccccCCCcccCCCC
Q 029453 97 AYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIPYAA------------SEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
++++++|+.+ ..|+..+.... .+.|+++|+||+|+.+.. ..++.. .+....
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~-~~a~~~------------- 145 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGE-ELRKQI------------- 145 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHH-HHHHHc-------------
Confidence 9999999998 57888775432 479999999999996421 111111 110000
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
....+++|||++|.|++++|+.+.+.
T Consensus 146 --~~~~~~E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 146 --GAAAYIECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred --CCCEEEECCCCcccCHHHHHHHHHHH
Confidence 12368999999999999999999874
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-28 Score=173.28 Aligned_cols=156 Identities=22% Similarity=0.333 Sum_probs=121.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...+||+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++.+...+..++..+++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45789999999999999999999988876 3445555332 3334333 57899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++++++..+..|+..+... ....|+++|+||+|+.+.. ..++...... . ..+.+
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~ 144 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAG-Q----------------MGISL 144 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHH-H----------------cCCEE
Confidence 999999999999999888887543 2578999999999997432 2222222111 1 11478
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|.|++++|++|.+.+
T Consensus 145 ~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 145 FETSAKENINVEEMFNCITELV 166 (199)
T ss_pred EEEECCCCcCHHHHHHHHHHHH
Confidence 9999999999999999997653
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-28 Score=168.42 Aligned_cols=154 Identities=21% Similarity=0.301 Sum_probs=119.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.++.+.. +.+|.+.. ...+..++ ..+.+||+||++++...+..+++.+|++++|+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 82 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 82 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEE
Confidence 799999999999999999999887764 33444432 23344443 57899999999999988889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++..+..|+..+... ...+.|+++|+||+|+... ...++...... . ..++++++
T Consensus 83 d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~~ 144 (166)
T cd01869 83 DVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFAD-E----------------LGIPFLET 144 (166)
T ss_pred ECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHHH-H----------------cCCeEEEE
Confidence 999999999999988887543 3357899999999998632 22222222111 1 12478999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|++|.+.+
T Consensus 145 Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 145 SAKNATNVEQAFMTMAREI 163 (166)
T ss_pred ECCCCcCHHHHHHHHHHHH
Confidence 9999999999999998765
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-28 Score=167.21 Aligned_cols=155 Identities=23% Similarity=0.308 Sum_probs=121.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
.+||+++|++|||||||++++.++.+. ...++.+. ....+..++ ..+.+||+||++++......+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 479999999999999999999988866 34455543 233444554 4789999999999988888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+++++++.....|+..+... ...+.|+++|+||+|+... ...++....... ..+.+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 144 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEK-----------------NGLSFIE 144 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccccccccCCHHHHHHHHHH-----------------cCCEEEE
Confidence 9999999999999888887543 2346899999999998632 233332222211 1257899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|+++++++|.+.+
T Consensus 145 ~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 145 TSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999998765
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-28 Score=167.52 Aligned_cols=152 Identities=18% Similarity=0.324 Sum_probs=117.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC----CeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG----KIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
+||+++|.+|+|||||++++.++.+.. ..+|.+... ..+.+. ...+.+|||||++++...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999887653 344544332 223333 4689999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++.....|+..+... ..+.|+++|+||+|+... ...++....... ..++++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~ 141 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKR-----------------LQLPLF 141 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHH-----------------cCCeEE
Confidence 99999999999888888877532 257999999999998642 223332211111 113789
Q ss_pred EEeeecCCChhHHHHhhhhh
Q 029453 172 MCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~ 191 (193)
++||++|.|+++++++|.+.
T Consensus 142 ~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 142 RTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999999865
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=170.98 Aligned_cols=154 Identities=17% Similarity=0.174 Sum_probs=115.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+||+++|++|||||||++++.++.+.. ..+|..... ..+.. ....+.+|||||++++......++..++++++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 799999999999999999999888753 334443222 12222 34678999999999998888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCC--CCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 97 AYDKERFSESKRELDALLSDE--ALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~--~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+++++++.....|+..+.... ...+.|+++|+||+|+.+. ...++... +... ..+.+++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~~~----------------~~~~~~e 144 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAA-CATE----------------WNCAFME 144 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHH-HHHH----------------hCCcEEE
Confidence 999999988888776654322 2357999999999999642 22222111 1100 1247899
Q ss_pred EeeecCCChhHHHHhhhhh
Q 029453 173 CSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~ 191 (193)
|||++|.|++++|++|.+.
T Consensus 145 ~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 145 TSAKTNHNVQELFQELLNL 163 (165)
T ss_pred eecCCCCCHHHHHHHHHhc
Confidence 9999999999999999764
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-28 Score=174.53 Aligned_cols=155 Identities=17% Similarity=0.236 Sum_probs=119.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC---CeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG---KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+||+++|.+|||||||++++.++.+.. +.+|.+... ..+.++ ...+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999888764 445655332 334443 46899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEA--LADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+++++++..+..|+..+..... ..+.|+++|+||+|+.. ....++...... . ..+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~-~----------------~~~~~ 143 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQ-A----------------NGMES 143 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHH-H----------------cCCEE
Confidence 999999999999888888765432 24578999999999963 222222221111 1 11467
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|+|++++|++|.+.+
T Consensus 144 ~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 144 CLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998754
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=171.63 Aligned_cols=167 Identities=16% Similarity=0.264 Sum_probs=116.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
.+||+++|.+|||||||+.++..+.+. .+.+|..... ..+..++ ..+.+|||+|++.+...+..++..+|++|+|+
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 369999999999999999999988876 4455554322 2333443 67889999999999988888999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAA-SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++.... .|+..+... ..+.|+++|+||+|+.... ..+.+..... ...... ....... ..+...+++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-~~v~~~-~~~~~~~-~~~~~~~~e~ 155 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKL-TPITYP-QGLAMAK-EIGAVKYLEC 155 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccC-CCCCHH-HHHHHHH-HcCCcEEEEe
Confidence 999999999986 466655432 2579999999999996321 1111211100 000000 0000000 0122488999
Q ss_pred eeecCCChhHHHHhhhhh
Q 029453 174 SIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~ 191 (193)
||++|.|++++|+.+.+.
T Consensus 156 Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 156 SALTQKGLKTVFDEAIRA 173 (174)
T ss_pred cccccCCHHHHHHHHHHh
Confidence 999999999999999765
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=166.08 Aligned_cols=154 Identities=21% Similarity=0.287 Sum_probs=119.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.++.+.. ..++.+.. ...+..++ ..+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999888654 33444332 23334443 57889999999999888889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++..+..|+..+.. ...++.|+++++||+|+... ...++....... ..++++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 142 (161)
T cd04113 81 DITNRTSFEALPTWLSDARA-LASPNIVVILVGNKSDLADQREVTFLEASRFAQE-----------------NGLLFLET 142 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEEchhcchhccCCHHHHHHHHHH-----------------cCCEEEEE
Confidence 99999999998888887643 33468999999999999632 223332222211 11579999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||+++.|++++|+++.+.+
T Consensus 143 Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 143 SALTGENVEEAFLKCARSI 161 (161)
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 9999999999999998764
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-28 Score=172.00 Aligned_cols=154 Identities=20% Similarity=0.282 Sum_probs=117.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
||+++|.+|||||||++++..+.+.. +.+|.+.. ...+..++ ..+.+|||||++++...+..+++.+|++++|+|+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999888764 33444322 23334444 4688999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 98 YDKERFSESKRELDALLSDEA--LADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
++.+++..+..|+..+..... ..+.|+++|+||+|+... ....+.. .+... ..++++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~~~~----------------~~~~~~e~ 143 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGA-ALARR----------------LGCEFIEA 143 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHH-HHHHH----------------hCCEEEEe
Confidence 999999999888888765432 257899999999999632 2222211 11100 12478999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|++|.+++
T Consensus 144 SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 144 SAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=167.38 Aligned_cols=151 Identities=19% Similarity=0.239 Sum_probs=113.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQ-PTQYPTSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
+||+++|++|||||||++++..+.+.... |+.+.....+..++ ..+.+||++|++.. .+.+.+|++++|+|+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEEC
Confidence 48999999999999999999888776433 33333334556665 56899999999752 345779999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY----AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+++++|+.+..|+..+.......+.|+++|+||+|+.. ..+.++. ..+.... ..+.+++|
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~-~~~~~~~---------------~~~~~~e~ 139 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARA-RQLCADM---------------KRCSYYET 139 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHH-HHHHHHh---------------CCCcEEEE
Confidence 99999999999999887665556799999999999842 2222211 1111111 23689999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|+.+.+.+
T Consensus 140 SAk~~~~i~~~f~~~~~~~ 158 (158)
T cd04103 140 CATYGLNVERVFQEAAQKI 158 (158)
T ss_pred ecCCCCCHHHHHHHHHhhC
Confidence 9999999999999998653
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=165.41 Aligned_cols=154 Identities=19% Similarity=0.286 Sum_probs=119.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.+..+.. ..++.+. ....+..++ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999888763 3444433 334444544 56899999999999998899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++.....|+..+..... .+.|+++++||+|+.+. ...++...... . ..+.++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~ 142 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-E----------------LNAMFIET 142 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH-H----------------hCCEEEEE
Confidence 99999999999988888765432 36999999999999522 22222222211 1 12578999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||+++.|+++++++|.+.+
T Consensus 143 Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 143 SAKAGHNVKELFRKIASAL 161 (161)
T ss_pred eCCCCCCHHHHHHHHHHhC
Confidence 9999999999999998754
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=167.11 Aligned_cols=154 Identities=18% Similarity=0.251 Sum_probs=118.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
||+++|.+|||||||++++.++.+. .+.+|.+... ..+..++ ..+.+|||||++++...+..+++.+|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999998876 4455655443 2333443 579999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+++++++.....|+..+.........|+++|+||+|+.+.... ++....+... ...+++++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~e~ 145 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAE----------------MQAEYWSV 145 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHH----------------cCCeEEEE
Confidence 9999999999999988865544345789999999998633221 1111111110 11368999
Q ss_pred eeecCCChhHHHHhhhhh
Q 029453 174 SIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~ 191 (193)
||++|.|++++|+.|.+.
T Consensus 146 Sa~~g~~v~~lf~~l~~~ 163 (170)
T cd04108 146 SALSGENVREFFFRVAAL 163 (170)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999998764
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=169.95 Aligned_cols=154 Identities=22% Similarity=0.298 Sum_probs=118.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV--QHQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+||+++|++|||||||++++.++.+. ...+|.+... ..+.+++ ..+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999988875 2344544332 2344443 6789999999999988888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+++++++..+..|+..+... ...+.|+++|+||+|+.. ....++..... .. ...++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~-~~----------------~~~~~~e 142 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLA-KE----------------YGVPFME 142 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHH-HH----------------cCCeEEE
Confidence 9999999999888888777643 334789999999999962 22333322211 11 1147899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|++++|++|.+.+
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 143 TSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998754
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-28 Score=169.71 Aligned_cols=157 Identities=20% Similarity=0.236 Sum_probs=118.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|.+|||||||++++.++.+.. +.+|.+... ..+..++ ..+.+||++|++.+...+..+++++|++++|+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999988774 566766543 3455554 67899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH---HHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASED---ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+++++++..+..|+..+... .....| ++|+||+|+.+....+ ...... ... . + ...+++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~-~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~-~~~-a--~---------~~~~~~~e 145 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGF-NKTAIP-ILVGTKYDLFADLPPEEQEEITKQA-RKY-A--K---------AMKAPLIF 145 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCE-EEEEEchhccccccchhhhhhHHHH-HHH-H--H---------HcCCEEEE
Confidence 999999999999998887653 223566 6789999996322111 111100 000 0 0 01257899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|++++|++|.+.+
T Consensus 146 ~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 146 CSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999997653
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-28 Score=173.29 Aligned_cols=156 Identities=21% Similarity=0.339 Sum_probs=120.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce--eEEEeC---CeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTS--EELSIG---KIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.+||+++|++|||||||++++.++.+... .+|.+... ..+... ...+.+|||+|++.+......+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999998887643 34544332 233332 3678999999999999888899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++..+..|+..+.........|+++|+||+|+... ...++... +... ..+.++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~-~~~~----------------~~~~~~ 144 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEK-LAKD----------------LGMKYI 144 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHH-HHHH----------------hCCEEE
Confidence 9999999999999999998875544456789999999999642 22222211 1111 125789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 145 e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 145 ETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-28 Score=167.67 Aligned_cols=151 Identities=18% Similarity=0.246 Sum_probs=115.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCccee--EEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTSE--ELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|.+|||||||++++.++.+... .++...... ....+ ...+.+|||+|++.+...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999998887643 233333221 22333 457889999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|++++.++.....|+..+... ..+.|+++|+||+|+.+.. ..+.. .+.. . ..++++++||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~-~~~~-~---------------~~~~~~~~Sa 140 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKF-NFAE-K---------------HNLPLYYVSA 140 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHH-HHHH-H---------------cCCeEEEEeC
Confidence 999999998888888887542 2478999999999985321 11111 1100 0 1247899999
Q ss_pred ecCCChhHHHHhhhhh
Q 029453 176 VRKMGYGEGFKWLSQY 191 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~ 191 (193)
++|.|++++|+.+.+.
T Consensus 141 ~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 141 ADGTNVVKLFQDAIKL 156 (161)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999998764
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=155.10 Aligned_cols=174 Identities=32% Similarity=0.575 Sum_probs=157.0
Q ss_pred HHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhh
Q 029453 6 WFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYY 85 (193)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 85 (193)
+++-+.++. +..++++|..+|-.++||||++..+..+....+.||.+.+.+++.+.+..+..||.+|++..+..|.+|+
T Consensus 4 ~~sk~~~k~-f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy 82 (180)
T KOG0071|consen 4 YMSKLLSKI-FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYY 82 (180)
T ss_pred hHHHHHHHH-hCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhc
Confidence 344344333 5677999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
....++|||+|+++.+.+++....+..+++.....+.|+++..||-|++.+-.++|+.+.+++...+.
T Consensus 83 ~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~------------ 150 (180)
T KOG0071|consen 83 TGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRD------------ 150 (180)
T ss_pred cCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccC------------
Confidence 99999999999999999999999999999888778999999999999999999999999998877321
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+.|-+++++|.+|.|+.|-+.||.+-+
T Consensus 151 ~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 151 RNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred CccEeeccccccchhHHHHHHHHHhhc
Confidence 568999999999999999999998765
|
|
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=166.31 Aligned_cols=158 Identities=23% Similarity=0.300 Sum_probs=120.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhH-HhHHhhhccCCEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMAR-RVWKDYYAKVDAVVY 93 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~~d~ii~ 93 (193)
.+||+++|++|||||||++++..+.+.. +.++.+.. ...+..++ ..+.+||++|++.+. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5799999999999999999999888663 34444332 23344444 688999999999886 467788899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+|++++++++....|+..+.......+.|+++|+||+|+..... ..+....+... ..+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~e 145 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADA----------------HSMPLFE 145 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHH----------------cCCcEEE
Confidence 999999999999999888876654456799999999999863221 11222222111 1257899
Q ss_pred Eeeec---CCChhHHHHhhhhhcC
Q 029453 173 CSIVR---KMGYGEGFKWLSQYIK 193 (193)
Q Consensus 173 ~Sa~~---~~gi~~~~~~i~~~l~ 193 (193)
+||++ +.|++++|..+.+.++
T Consensus 146 ~Sa~~~~~~~~i~~~f~~l~~~~~ 169 (170)
T cd04115 146 TSAKDPSENDHVEAIFMTLAHKLK 169 (170)
T ss_pred EeccCCcCCCCHHHHHHHHHHHhh
Confidence 99999 8999999999987763
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=164.94 Aligned_cols=156 Identities=21% Similarity=0.257 Sum_probs=120.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.-+||+++|.+|||||||++++.+..+... .++.+.. ...+..++ ..+.+||+||++++......+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 347999999999999999999998876643 3343332 23344443 578999999999998888889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++.++..+..|+..+.... .++.|+++|+||+|+.. ....++....... ..+.++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 144 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKE-----------------HGLIFM 144 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEE
Confidence 999999999999999888885532 36799999999999973 2333333322211 124689
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||+++.|++++|+++.+.+
T Consensus 145 e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 145 ETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=166.05 Aligned_cols=154 Identities=19% Similarity=0.340 Sum_probs=116.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--Ccc-ccCCCCCcce--eEEEe---CCeEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE--RLV-QHQPTQYPTS--EELSI---GKIKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~--~~~-~~~~t~~~~~--~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
+||+++|++|||||||++++... .+. .+.+|.+... ..+.. ....+.+|||||++.+..+...++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 343 3444554433 22222 3478999999999999988899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH-HHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASED-ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|+++++++.....|+..+.... .+.|+++|+||+|+.+..... +....+... ..++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~ 142 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQA----------------NQLKFF 142 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHH----------------cCCeEE
Confidence 9999999999988888888775432 568999999999996432211 111111111 124689
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 143 ~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 143 KTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred EEeCCCCCChHHHHHHHHHHh
Confidence 999999999999999998764
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=163.83 Aligned_cols=155 Identities=22% Similarity=0.307 Sum_probs=121.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.+..+.. ..++.+... ..+..++ ..+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999888753 445544332 2333443 67899999999999888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP-YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
|+++++++.....|+..+.......+.|+++|+||+|+. +....++....... ..++++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~-----------------~~~~~~~~S 143 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARK-----------------HNMLFIETS 143 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHH-----------------cCCEEEEEe
Confidence 999999999888888877665556789999999999997 33333332222111 125789999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|++|.|++++++++.+++
T Consensus 144 a~~~~gi~~~~~~~~~~~ 161 (161)
T cd01863 144 AKTRDGVQQAFEELVEKI 161 (161)
T ss_pred cCCCCCHHHHHHHHHHhC
Confidence 999999999999998764
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-28 Score=168.13 Aligned_cols=157 Identities=17% Similarity=0.249 Sum_probs=120.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
++||+++|++|||||||++++.++.+.. +.+|.... ...+..++ ..+.+||+||++++..++..+++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 4799999999999999999999888764 34444322 23334443 67899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|.+++++++....|...+.+.....+.|+++++||+|+... ...++... +.... ...+++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~-~~~~~---------------~~~~~~~~ 144 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-LSQQW---------------GNVPFYET 144 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH-HHHHc---------------CCceEEEe
Confidence 99999999998888887765444568999999999998632 22222211 11111 22578999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|++|..++
T Consensus 145 SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 145 SARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=170.45 Aligned_cols=166 Identities=19% Similarity=0.241 Sum_probs=115.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
++||+++|.+|||||||++++.++.+.. +.||.+... ..+..+ ...+.+|||+|++.+......++..+|++++|+
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 4699999999999999999999988763 445554332 233344 367899999999999888888999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++++|..+ ..|+..+... . ++.|+++|+||+||..... ..++... ........ .....+. ......+++|
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~-~-~~~~iilVgnK~DL~~~~~~~~~~~~~-~~~~v~~~-e~~~~a~-~~~~~~~~E~ 155 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEF-C-PNTKVLLVGCKTDLRTDLSTLMELSHQ-RQAPVSYE-QGCAIAK-QLGAEIYLEC 155 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHH-C-CCCCEEEEEEChhhhcChhHHHHHHhc-CCCCCCHH-HHHHHHH-HhCCCEEEEC
Confidence 99999999986 6777777543 2 5799999999999953210 0000000 00000000 0000000 0012378999
Q ss_pred eeecCCC-hhHHHHhhhh
Q 029453 174 SIVRKMG-YGEGFKWLSQ 190 (193)
Q Consensus 174 Sa~~~~g-i~~~~~~i~~ 190 (193)
||++|+| ++++|..+.+
T Consensus 156 SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 156 SAFTSEKSVRDIFHVATM 173 (178)
T ss_pred ccCcCCcCHHHHHHHHHH
Confidence 9999995 9999999876
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=173.23 Aligned_cols=155 Identities=21% Similarity=0.273 Sum_probs=122.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc-ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP-TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+||+++|.+|||||||++++.++.+.. +.+|.+. ....+.+++ +.+.+|||+|++.+..+...++..+|++|+|+|
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 589999999999999999999888764 4455542 233445554 678899999999888877778889999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCC--------CCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 97 AYDKERFSESKRELDALLSDE--------ALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+++.++|+....|+..+.... ...+.|+++|+||+|+. +....+++.+..... .
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----------------~ 144 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----------------E 144 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----------------C
Confidence 999999999988888886431 23579999999999996 344555554444321 1
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhh
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.+.++++||++|.|++++|++|...
T Consensus 145 ~~~~~evSAktg~gI~elf~~L~~~ 169 (247)
T cd04143 145 NCAYFEVSAKKNSNLDEMFRALFSL 169 (247)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 2579999999999999999999764
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=173.26 Aligned_cols=168 Identities=19% Similarity=0.249 Sum_probs=116.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
..+||+++|.+|||||||++++..+.+.. +.||.+... ..+..+ ...+.+|||+|++.+..+...++..+|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 57899999999999999999999988773 455654433 223333 36799999999999999889999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIPYAASE-DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++++++|... ..|+..+.... ++.|+++|+||+|+...... .++.... ....... .....+. ......+++
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~-~~~Vs~~-e~~~~a~-~~~~~~~~E 166 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQK-QAPISYE-QGCALAK-QLGAEVYLE 166 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhcccc-CCcCCHH-HHHHHHH-HcCCCEEEE
Confidence 999999999874 67777775432 47899999999998532110 0000000 0000000 0000000 001125899
Q ss_pred EeeecCC-ChhHHHHhhhhh
Q 029453 173 CSIVRKM-GYGEGFKWLSQY 191 (193)
Q Consensus 173 ~Sa~~~~-gi~~~~~~i~~~ 191 (193)
|||++|+ |++++|+.+...
T Consensus 167 tSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHH
Confidence 9999998 899999998654
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-28 Score=171.58 Aligned_cols=168 Identities=19% Similarity=0.314 Sum_probs=118.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
.||+++|++|||||||++++.++.+.. +.+|.+... ..+..+ ...+.+|||+|++.+...+..++..++++++|+|
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 389999999999999999999988764 445554332 223333 3679999999999988888888899999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 97 AYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 97 ~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
++++++++... .|+..+... ..+.|+++|+||+|+.......+................ .... ....+.+++|||
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-~~~~~~~~e~SA 156 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGL-AVAK-RINALRYLECSA 156 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHH-HHHH-HcCCCEEEEccC
Confidence 99999998876 466666532 257999999999999754332222111111110000000 0000 012367999999
Q ss_pred ecCCChhHHHHhhhhhc
Q 029453 176 VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~l 192 (193)
++|.|++++|++|.+.+
T Consensus 157 k~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 157 KLNRGVNEAFTEAARVA 173 (189)
T ss_pred CcCCCHHHHHHHHHHHH
Confidence 99999999999998653
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-27 Score=163.04 Aligned_cols=155 Identities=18% Similarity=0.283 Sum_probs=120.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+||+++|++|||||||++++....+.. ..++..... .....+ ...+.+||+||+..+......+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999887763 333333222 223333 3679999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
.+++.++.....++..+.......++|+++|+||+|+.. .....+....... ...+++++|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~S 143 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQ-----------------WGVPYVETS 143 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHH-----------------hCCeEEEee
Confidence 999999999999988888765556899999999999964 2222222221111 114789999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|++|.|++++|++|.+++
T Consensus 144 a~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 144 AKTRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=164.94 Aligned_cols=155 Identities=20% Similarity=0.366 Sum_probs=118.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.+..+... .++.+.. ...+..++ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999998876532 3343322 23344444 56789999999999888889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCC---CCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEA---LADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~---~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
|+++++++.....|...+..... ..++|+++|+||+|+.. ....++....... . ...++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~---------------~~~~~ 144 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS-N---------------GNIPY 144 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH-c---------------CCceE
Confidence 99999888888777776654432 24799999999999973 3334443332221 1 23589
Q ss_pred EEEeeecCCChhHHHHhhhhh
Q 029453 171 FMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+++|+++|.|+++++++|.+.
T Consensus 145 ~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 145 FETSAKEAINVEQAFETIARK 165 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999864
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-27 Score=168.81 Aligned_cols=159 Identities=21% Similarity=0.291 Sum_probs=120.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
....+||+++|++|||||||++++.+..+....++.+... ..+..++ ..+.+|||||++++...+..+++.+|+++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4568899999999999999999999888766656655432 3344443 57899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSD-EALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
+|+|+++++++......+...+.. ....+.|+++|+||+|+... ...++....... ..+.
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~-----------------~~~~ 153 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKE-----------------HGCL 153 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-----------------cCCE
Confidence 999999999999887655444333 22356899999999999633 222222211111 1246
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||+++.|++++|++|.+.+
T Consensus 154 ~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 154 FLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998654
|
|
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=161.64 Aligned_cols=153 Identities=21% Similarity=0.284 Sum_probs=127.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCCc----ceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-TQYP----TSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-t~~~----~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
....+|+.++|..|+|||+|+.++....+.+..+ |.+. ....++.....+.+|||.||+.|++....|++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 4467899999999999999999999999886554 4443 3344555568899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHH---HHHhhCCCccccCCCcccCCCCCCc
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDE---LRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
++|+|++++++|..+..|+.++.+ ....+..+++++||+||. +..+.+| +.++.++.+
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq-~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLif---------------- 145 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQ-HSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIF---------------- 145 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHH-hcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCcee----------------
Confidence 999999999999999999999964 445789999999999997 5555555 555555554
Q ss_pred cEEEEEEeeecCCChhHHHHhhhh
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
.++||++++|++|.|-.+..
T Consensus 146 ----mETSakt~~~VEEaF~nta~ 165 (216)
T KOG0098|consen 146 ----METSAKTAENVEEAFINTAK 165 (216)
T ss_pred ----ehhhhhhhhhHHHHHHHHHH
Confidence 68999999999999987654
|
|
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=163.08 Aligned_cols=154 Identities=23% Similarity=0.364 Sum_probs=117.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|+|||||++++.++.+.. ..++.... ...+... ...+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999887753 22333222 2233333 357899999999999888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++.....|+..+..... .++|+++++||+|+... ...++....... ....++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 142 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKS-----------------VGAKHFET 142 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEEEE
Confidence 99999999888888877755432 37999999999998732 223333322211 12467999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
|+++++|++++++||.+.+
T Consensus 143 s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 143 SAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998764
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-27 Score=161.77 Aligned_cols=154 Identities=23% Similarity=0.343 Sum_probs=118.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.+..+.. ..++.+.. ...+..++ ..+.+||+||++.+......++..+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 589999999999999999999887653 33443332 23444544 57889999999999988899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|++++.+++.+..|+..+.... ..++|+++++||+|+.+. ...++...... . ..++++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-~----------------~~~~~~e~ 142 (164)
T smart00175 81 DITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAE-E----------------HGLPFFET 142 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHH-H----------------cCCeEEEE
Confidence 9999999998888888775433 258999999999998742 23233322211 1 12468999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|+++++++|.+.+
T Consensus 143 Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 143 SAKTNTNVEEAFEELAREI 161 (164)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=166.61 Aligned_cols=154 Identities=16% Similarity=0.209 Sum_probs=114.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC---CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG---KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.++.+.. +.+|.+... ..+... ...+.+|||||++++...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999988763 334443332 223332 367899999999999888888899999999999
Q ss_pred eCCChhhHHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCC------CHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 96 DAYDKERFSESKR-ELDALLSDEALADVPFLILGNKIDIPYAA------SEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 96 d~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|++++++++.+.. |+..+... ..+.|+++|+||+|+.... ..++..+... .. ...
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-~~---------------~~~ 142 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK-KQ---------------GAF 142 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH-Hc---------------CCc
Confidence 9999999988764 65555322 2578999999999996432 1222111111 11 123
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|++++|+.+.+.+
T Consensus 143 ~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 143 AYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999997653
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=167.69 Aligned_cols=154 Identities=21% Similarity=0.297 Sum_probs=118.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.++.+.. +.+|.+.. ...+..++ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999988764 45555433 23344433 57889999999999988899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++..+..|+..+... ...+.|+++++||+|+.+.. ..++.. .+... ..++++++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~~~~~-~~~~~----------------~~~~~~ev 142 (188)
T cd04125 81 DVTDQESFENLKFWINEINRY-ARENVIKVIVANKSDLVNNKVVDSNIAK-SFCDS----------------LNIPFFET 142 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCCCcccccCCHHHHH-HHHHH----------------cCCeEEEE
Confidence 999999999999988887643 23468999999999987322 222221 11110 12378999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|++|.+.+
T Consensus 143 Sa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 143 SAKQSINVEEAFILLVKLI 161 (188)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999997754
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=170.63 Aligned_cols=167 Identities=20% Similarity=0.279 Sum_probs=116.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
++||+++|.+|||||||++++..+.+. .+.||.+... ..+..++ ..+.+|||+|++.+......++..+|++++|+
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 369999999999999999999998877 4556665443 2344443 67889999999999999899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE-DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
|+++++++..+..+|....... .++.|+++|+||+|+...... .++... ...... ......++. ......+++||
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~-~~~pIs-~e~g~~~ak-~~~~~~y~E~S 156 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQ-RLIPVT-HEQGTVLAK-QVGAVSYVECS 156 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhc-cCCccC-HHHHHHHHH-HcCCCEEEEcC
Confidence 9999999999865444443332 357999999999999643211 111110 000000 000000010 01224899999
Q ss_pred eecCCC-hhHHHHhhhh
Q 029453 175 IVRKMG-YGEGFKWLSQ 190 (193)
Q Consensus 175 a~~~~g-i~~~~~~i~~ 190 (193)
|+++.| ++++|+....
T Consensus 157 Ak~~~~~V~~~F~~~~~ 173 (222)
T cd04173 157 SRSSERSVRDVFHVATV 173 (222)
T ss_pred CCcCCcCHHHHHHHHHH
Confidence 999985 9999998765
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-27 Score=168.55 Aligned_cols=147 Identities=17% Similarity=0.323 Sum_probs=115.1
Q ss_pred EcCCCCCHHHHHHHHhcCCccc-cCCCCCccee--EEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCCh
Q 029453 26 LGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSE--ELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 26 ~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 100 (193)
+|.+|||||||++++..+.+.. +.+|.+.... .+.. ....+.+|||+|++++..++..+++.++++|+|+|++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 5999999999999999888763 4566654433 2333 347899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCC
Q 029453 101 ERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKM 179 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 179 (193)
.++..+..|+..+.+.. .+.|+++|+||+|+... ...++. . +. . ...+.+++|||++|.
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~-~~--~--------------~~~~~~~e~SAk~~~ 140 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-T-FH--R--------------KKNLQYYDISAKSNY 140 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-H-HH--H--------------HcCCEEEEEeCCCCC
Confidence 99999988888886532 57999999999998632 222211 1 10 0 023689999999999
Q ss_pred ChhHHHHhhhhhc
Q 029453 180 GYGEGFKWLSQYI 192 (193)
Q Consensus 180 gi~~~~~~i~~~l 192 (193)
|++++|++|.+.+
T Consensus 141 ~v~~~F~~l~~~i 153 (200)
T smart00176 141 NFEKPFLWLARKL 153 (200)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-27 Score=163.34 Aligned_cols=159 Identities=16% Similarity=0.240 Sum_probs=112.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc-eeEEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-SEELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
+||+++|.+|||||||++++.++.+....++.... .....+ .+..+.+|||||++.+...+..++..+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999998876544432222 222222 457899999999988877777778999999999999
Q ss_pred CChhhHHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 98 YDKERFSESKR-ELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++.++..... |+..+ .... .+.|+++|+||+|+.+............... .. ......++++||+
T Consensus 81 ~~~~s~~~~~~~~~~~i-~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~e~Sa~ 147 (166)
T cd01893 81 DRPSTLERIRTKWLPLI-RRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIM-NE----------FREIETCVECSAK 147 (166)
T ss_pred CCHHHHHHHHHHHHHHH-HHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHH-HH----------HhcccEEEEeccc
Confidence 99999988754 44444 3322 4799999999999975433211111110000 00 0011378999999
Q ss_pred cCCChhHHHHhhhhhc
Q 029453 177 RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 177 ~~~gi~~~~~~i~~~l 192 (193)
+|.|++++|+.+...+
T Consensus 148 ~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 148 TLINVSEVFYYAQKAV 163 (166)
T ss_pred cccCHHHHHHHHHHHh
Confidence 9999999999987754
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=167.84 Aligned_cols=158 Identities=19% Similarity=0.277 Sum_probs=122.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
+..+||+++|++|||||||++++.+..+. ...+|.+.. ...+..++ ..+.+||++|++++...+..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 35689999999999999999999988876 344555443 23444444 58999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|++++++++.+..|+..+... ...+.|+++|+||+|+.+... ..+....+... ..++++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~----------------~~~~~~ 152 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK----------------EGLSFL 152 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHHHH----------------cCCEEE
Confidence 999999999999998888877543 335799999999999863221 11222222111 225799
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 153 e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 153 ETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999997654
|
|
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-27 Score=162.37 Aligned_cols=156 Identities=22% Similarity=0.334 Sum_probs=126.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-TQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
.+.+-+||+++|.+|||||+++.++..+.+..... |.+. ...++..++ ..+.+|||.||+++.....+|+..+.+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 35577899999999999999999999888875443 4443 334455544 679999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHH---HHHhhCCCccccCCCcccCCCCCC
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDE---LRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
+++|||+++..+|..+..|+..+- .....+.|.++|+||+|+. +..+.++ +..+++.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~-e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~----------------- 149 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNID-EHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGI----------------- 149 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHH-hhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCC-----------------
Confidence 999999999999999999887774 5555689999999999997 2333332 4444444
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++||++|.||++.|-.|...+
T Consensus 150 ---~F~EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 150 ---KFFETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred ---eEEEccccCCCCHHHHHHHHHHHH
Confidence 559999999999999999887643
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=158.79 Aligned_cols=152 Identities=24% Similarity=0.344 Sum_probs=119.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcceeEE--Ee--CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTSEEL--SI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~~~--~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|++|||||||++++.+..+... .+|.+...... .. ....+.+||+||+..+......+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999998887754 45555444333 33 3478899999999999888899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+++++++.....|+..+.... ..+.|+++++||+|+. .....++..+.... ...+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 142 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-----------------NGLLFFET 142 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHH-----------------cCCeEEEE
Confidence 9999988888888887776542 2579999999999995 33344443333222 12579999
Q ss_pred eeecCCChhHHHHhhhh
Q 029453 174 SIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~ 190 (193)
||+++.|+++++++|.+
T Consensus 143 sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 143 SAKTGENVEELFQSLAE 159 (159)
T ss_pred ecCCCCCHHHHHHHHhC
Confidence 99999999999999864
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=165.81 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=112.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhH--------HhHHhhhcc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMAR--------RVWKDYYAK 87 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~--------~~~~~~~~~ 87 (193)
+||+++|.+|||||||++++.++.+.. +.||.+.. ...+.+++ ..+.+|||||...+. ......++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999888764 45555432 23444555 678899999965321 112345788
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCC--CCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDE--ALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+|++++|+|++++++++....|+..+.... ...++|+++|+||+|+... ...++... +....
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~-~~~~~------------- 146 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSV-LVRKS------------- 146 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHH-HHHHh-------------
Confidence 999999999999999999988888876543 2467999999999999632 22222211 10000
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
..++++++||++|.|++++|+.+...
T Consensus 147 --~~~~~~e~Sak~g~~v~~lf~~i~~~ 172 (198)
T cd04142 147 --WKCGYLECSAKYNWHILLLFKELLIS 172 (198)
T ss_pred --cCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 23578999999999999999998753
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=161.50 Aligned_cols=153 Identities=20% Similarity=0.233 Sum_probs=117.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV--QHQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
.+-+||+++|.+|||||||++++.++.+. .+.+|.+... ..+..++ ..+.+||++|++.+...+..++..+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35689999999999999999999998875 3455655432 3445544 5788999999998888888888999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-----CHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA-----SEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
++|+|++++.++.....|+..+.. ..++|+++|+||+|+.+.. ..+++.+.++..
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----------------- 141 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP----------------- 141 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCC-----------------
Confidence 999999999888888777775522 2479999999999996322 122333332221
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++||++|.|++++|+.|.+.+
T Consensus 142 --~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 142 --PPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred --CCEEEEeccCccHHHHHHHHHHHh
Confidence 348999999999999999987643
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=157.01 Aligned_cols=160 Identities=20% Similarity=0.269 Sum_probs=129.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCC-CCc--ceeEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPT-QYP--TSEELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t-~~~--~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
.....+||.++|.+|+|||||+.++..+.+.+..++ .+. ....+..+ ...+.+|||+|+++|+.+.+.|++.+.+
T Consensus 7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 345679999999999999999999999999877764 443 33444444 4678999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+|+|+|++.+++|..+..|+.++-.....+++-.++|+||+|.. +..+.+|=.+.-.. ..+
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~-----------------h~~ 149 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARK-----------------HRC 149 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHh-----------------hCc
Confidence 99999999999999999999988665555678889999999986 44555542222211 235
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++|||++.+|+...|+.++..+
T Consensus 150 LFiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 150 LFIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred EEEEcchhhhccHHHHHHHHHHHH
Confidence 779999999999999999988754
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=165.53 Aligned_cols=155 Identities=21% Similarity=0.225 Sum_probs=119.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCC-cceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQH-QPTQY-PTSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
||+++|.+|||||||++++.++.+... .+|.. .....+.+++ ..+.+||+||+..+..++..++..+|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999998887643 33332 2223455555 6789999999999888888889999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-C--CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-A--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+++.+++....|+..+.......+.|+++|+||+|+.+. . ..++..+..... ....++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~----------------~~~~~~~~S 144 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELD----------------WNCGFVETS 144 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhh----------------cCCcEEEec
Confidence 999999999888888877655568999999999998642 1 121222111100 124689999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|++|.|++++|++|.+.+
T Consensus 145 a~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 145 AKDNENVLEVFKELLRQA 162 (198)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998764
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=164.08 Aligned_cols=153 Identities=18% Similarity=0.234 Sum_probs=116.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ--HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+||+++|++|+|||||++++.++.+.. +.+|.+... ..+..++ ..+.+||++|++++......++..+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988763 445555432 3345554 4677999999999888888888999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC------CHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA------SEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+|++++.++.....|+..+... ..+.|+++|+||+|+.... ..++...... . ...
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-~----------------~~~ 141 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD-E----------------IKA 141 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHH-H----------------cCC
Confidence 9999999998888888877543 2479999999999985321 1111111110 0 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|+++++++|.+.+
T Consensus 142 ~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 142 QHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998643
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=159.72 Aligned_cols=158 Identities=20% Similarity=0.203 Sum_probs=118.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...++|+++|++|||||||++++..+.+.. ..++.+. ....+.+.+ ..+.+||+||++.+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 456899999999999999999998766553 3344332 223445554 56889999999999888888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|++++.++.....|+..+... ...+.|+++++||+|+.+... ..+....+... ....++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~----------------~~~~~~ 147 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSDA----------------QDMYYL 147 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHH----------------cCCeEE
Confidence 999999998888888877766432 334789999999999863222 12222222211 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 148 ~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 148 ETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998754
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-26 Score=163.49 Aligned_cols=157 Identities=23% Similarity=0.296 Sum_probs=120.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...+||+++|++|||||||++++.+..+.. ..+|.+.. ...+.+++ ..+.+|||+|++.+...+..++..+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 356899999999999999999999887653 34444433 23344444 56889999999999888888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++++++..+..|+..+... ...+.|+++++||+|+.. ....++....... ..+++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 145 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----------------HGLIF 145 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHHHH-----------------cCCEE
Confidence 999999999999888888776543 235799999999999963 3333333322211 12478
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||+++.|++++|+++.+.+
T Consensus 146 ~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 146 MEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999987653
|
|
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=157.95 Aligned_cols=154 Identities=21% Similarity=0.295 Sum_probs=118.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCC-cceeEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQH-QPTQY-PTSEELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
||+++|++|||||||++++.+..+... .++.. ........+ ...+.+||+||+..+......+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 689999999999999999998775532 33332 223334444 36789999999999888888899999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
++++++.....++..+.......+.|+++++||+|+... ...++....... . ..+++++|+
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~----------------~~~~~~~S~ 143 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKE-W----------------GCPFIETSA 143 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHH-c----------------CCcEEEecc
Confidence 999999999998888877654468999999999998742 222222222211 1 147899999
Q ss_pred ecCCChhHHHHhhhhhc
Q 029453 176 VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~l 192 (193)
+++.|+++++++|.+++
T Consensus 144 ~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 144 KDNINIDEVFKLLVREI 160 (160)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 99999999999998764
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=163.13 Aligned_cols=168 Identities=19% Similarity=0.268 Sum_probs=115.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+||+++|++|+|||||++++.++.+.. +.++.... ...+..++ ..+.+|||||++.+...+..++..+|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999888764 33443322 22344444 457899999999988888888899999999999
Q ss_pred CCChhhHHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 97 AYDKERFSESKR-ELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
.+++++++.... |+..+ ... ..+.|+++++||+|+.+.....+....+......... ....+ ......++++|||
T Consensus 81 ~~~~~s~~~~~~~~~~~l-~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~-~~~~~~~~~e~Sa 156 (174)
T cd04135 81 VVNPASFQNVKEEWVPEL-KEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQ-GQKLA-KEIGAHCYVECSA 156 (174)
T ss_pred CCCHHHHHHHHHHHHHHH-Hhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHH-HHHHH-HHcCCCEEEEecC
Confidence 999999988764 44444 333 4689999999999986432222111111111110000 00000 0012247899999
Q ss_pred ecCCChhHHHHhhhhhc
Q 029453 176 VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~l 192 (193)
++|.|++++|+.++..+
T Consensus 157 ~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 157 LTQKGLKTVFDEAILAI 173 (174)
T ss_pred CcCCCHHHHHHHHHHHh
Confidence 99999999999998754
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=160.27 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=120.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc-ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP-TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
.||+++|++|||||||++++.+..+.. ..+|... ....+...+ ..+.+||+||++++...+..++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999887653 4444432 234455554 567899999999998888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
.++..+++....++..+++.....+.|+++++||+|+... ...++...... . ..++++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~~~~~S 144 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE-S----------------WGAAFLESS 144 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH-H----------------cCCeEEEEe
Confidence 9999999999999999887665568899999999998632 22222221111 1 114789999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|+++.|+.+++++|.+.+
T Consensus 145 a~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 145 ARENENVEEAFELLIEEI 162 (180)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998754
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=166.28 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=112.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCC--cceeEEEe--CCeEEEEEEcCChhhhHHhHHhhhc-cCCEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV--QHQPTQY--PTSEELSI--GKIKFKAFDLGGHQMARRVWKDYYA-KVDAVVY 93 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~-~~d~ii~ 93 (193)
+||+++|++|||||||++++..+.+. .+.++.+ .....+.+ ....+.+||+||++.+ ....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 58999999999999999999887774 3334442 22333444 3467899999999832 2334556 8999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+.. ..++.. .+... ..++++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~-~~a~~----------------~~~~~~ 141 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGR-ACAVV----------------FDCKFI 141 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHH-HHHHH----------------cCCeEE
Confidence 99999999999888888877654434679999999999996432 222211 11100 124689
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 142 e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 142 ETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred EecCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998765
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=161.40 Aligned_cols=154 Identities=20% Similarity=0.254 Sum_probs=111.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCC-cceeEEEeCC--eEEEEEEcCChhh-hHHhHHhhhccCCEEEEEEe
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQY-PTSEELSIGK--IKFKAFDLGGHQM-ARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d~ii~v~d 96 (193)
||+++|++|||||||++++..+.+.. +.++.. ........++ ..+.+||+||++. .......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 58999999999999999998877653 333332 1223334443 4688999999985 33455677889999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCC-CCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 97 AYDKERFSESKRELDALLSDEA-LADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
++++++++.+..|+..+..... ..+.|+++|+||+|+.+. .+.++..... .. ...+++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-~~----------------~~~~~~e~ 143 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLA-SE----------------LGCLFFEV 143 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHH-HH----------------cCCEEEEe
Confidence 9999999988888777654332 357999999999998632 2322221111 11 11478999
Q ss_pred eeecCC-ChhHHHHhhhhhc
Q 029453 174 SIVRKM-GYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~-gi~~~~~~i~~~l 192 (193)
||++|. |++++|+.|.+.+
T Consensus 144 Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 144 SAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CCCCCchhHHHHHHHHHHHH
Confidence 999995 9999999998764
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=159.33 Aligned_cols=153 Identities=25% Similarity=0.369 Sum_probs=121.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
||+++|++|||||||++++.++.+.. ..+|.+... ..+..++ ..+.+||++|++++.......+.++|++++|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999988764 444554433 3444444 579999999999999888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
.++++++..+..|+..+..... .+.|+++++||.|+.. ..+.++...... .. + .+++++|
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-~~---------------~-~~~~e~S 142 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-EL---------------G-VPYFEVS 142 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH-HT---------------T-SEEEEEB
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH-Hh---------------C-CEEEEEE
Confidence 9999999999999998865543 4689999999999874 444443222221 11 1 5789999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|+++.|+.++|..+.+.+
T Consensus 143 a~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 143 AKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTTTTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=162.63 Aligned_cols=158 Identities=19% Similarity=0.289 Sum_probs=110.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcc-eeEEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPT-SEELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+||+++|++|||||||++++.++.+. ...++.... ...... ....+.+||+||++++.......++.+|++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999998874 233333221 122222 34679999999999887777777889999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHH--------HhhCCCccccCCCcccCCCCCCccE
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELR--------YHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
++++.++......+...+.... .+.|+++|+||+|+.+........ ....... ....+..
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~~~ 148 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKL-----------AKEIGAI 148 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHH-----------HHHhCCe
Confidence 9998888876654444333322 479999999999997443321110 0000000 0001234
Q ss_pred EEEEEeeecCCChhHHHHhhhh
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
+++++||++|.|+++++++|.+
T Consensus 149 ~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 149 GYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEEEeecCCCCCHHHHHHHHhh
Confidence 8999999999999999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-27 Score=163.21 Aligned_cols=164 Identities=18% Similarity=0.271 Sum_probs=112.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
|+++|++|||||||++++.++.+.. +.++..... ..+..++ ..+.+|||||++.+......+++.+|++++|+|++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 5899999999999999999988764 334433222 2333443 46899999999998888888899999999999999
Q ss_pred ChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 99 DKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 99 ~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
++++++... .|+..+... .++.|+++|+||+|+..... .+++... ......... ....+. ......+++|||+
T Consensus 81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~v~~~~-~~~~~~-~~~~~~~~e~Sa~ 155 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQ-KQEPVTYEQ-GEALAK-RIGAVKYLECSAL 155 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcc-cCCCccHHH-HHHHHH-HcCCcEEEEecCC
Confidence 999999876 466666432 25899999999999964221 1111111 000000000 000000 0122478999999
Q ss_pred cCCChhHHHHhhhhh
Q 029453 177 RKMGYGEGFKWLSQY 191 (193)
Q Consensus 177 ~~~gi~~~~~~i~~~ 191 (193)
+|.|++++|+.+.+.
T Consensus 156 ~~~~v~~lf~~l~~~ 170 (174)
T smart00174 156 TQEGVREVFEEAIRA 170 (174)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998765
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-27 Score=158.46 Aligned_cols=176 Identities=32% Similarity=0.523 Sum_probs=148.2
Q ss_pred HHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCc--------cccCCCCCcceeEEEeCCeEEEEEEcCChhh
Q 029453 5 DWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERL--------VQHQPTQYPTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
+.++.+++.+ ..+..+.+.|+|+-+||||||+.+...... ....+|.+.+..++..++..+.+||.+|++.
T Consensus 3 tl~~gl~~~~-~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~ 81 (197)
T KOG0076|consen 3 TLMSGLYKYM-FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQES 81 (197)
T ss_pred hHHHHHHHHH-hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHH
Confidence 4566666555 677889999999999999999988643322 1234588889999999999999999999999
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKG 156 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 156 (193)
.+++|..|+..++++|+++|+++++.++.....++.+.......+.|+++.+||-|+.+.....++...++...
T Consensus 82 lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e------ 155 (197)
T KOG0076|consen 82 LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAE------ 155 (197)
T ss_pred HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhh------
Confidence 99999999999999999999999999999999999998887778999999999999988777777777776411
Q ss_pred cccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....+.+++.++||.+|+|+++..+|++..+
T Consensus 156 -----~~~~rd~~~~pvSal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 156 -----LIPRRDNPFQPVSALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred -----hcCCccCccccchhhhcccHHHHHHHHHHHH
Confidence 1122668999999999999999999998765
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-26 Score=159.34 Aligned_cols=165 Identities=15% Similarity=0.251 Sum_probs=111.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+|++++|++|||||||++++.++.+... .+|.... ...+..++ ..+.+||+||++++...+..+++++|++++|+|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 5899999999999999999988877643 3343211 12334443 678899999999998888888899999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 97 AYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASE-DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
++++++++... .|+..+... ..+.|+++++||+|+.+.... ..+... ......... ....+. ....+.++++|
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~v~~~~-~~~~a~-~~~~~~~~e~S 155 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARY-GEKPVSQSR-AKALAE-KIGACEYIECS 155 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhc-CCCCcCHHH-HHHHHH-HhCCCeEEEEe
Confidence 99999998875 466555432 247999999999998642211 000000 000000000 000000 01234899999
Q ss_pred eecCCChhHHHHhhhh
Q 029453 175 IVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~ 190 (193)
|++|.|++++|+.+.-
T Consensus 156 a~~~~~v~~lf~~~~~ 171 (173)
T cd04130 156 ALTQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 9999999999998753
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=156.31 Aligned_cols=156 Identities=21% Similarity=0.333 Sum_probs=125.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
...-+||.++|.+|+|||||++++.+.++.. +..|.+.. ...+.+++ ..+.+|||+|+++|.++...+++.+|+.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 3456899999999999999999999999874 44555532 33344443 6789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCC---CCCcEEEEeeCCCCCCCC----CHH---HHHHhhCCCccccCCCcccCC
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEAL---ADVPFLILGNKIDIPYAA----SED---ELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~pviiv~nK~Dl~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~ 161 (193)
++++|++++.+|+.+..|..+++.+... ...|.++++||+|+.... +.. +++...
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~--------------- 150 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK--------------- 150 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhc---------------
Confidence 9999999999999999999999887543 358999999999996322 211 233322
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+..+++++|||...|+.+.|+.+...
T Consensus 151 ----gnipyfEtSAK~~~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 151 ----GNIPYFETSAKEATNVDEAFEEIARR 176 (210)
T ss_pred ----CCceeEEecccccccHHHHHHHHHHH
Confidence 45689999999999999999988653
|
|
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=149.42 Aligned_cols=155 Identities=20% Similarity=0.327 Sum_probs=125.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeE---EEeC-CeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEE---LSIG-KIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~---~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
....+|+.++|+..+|||||+.++.++.+. ....|.+..... ++.. -..+.+|||.|++.++.....+++.++++
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence 346779999999999999999999999887 344566554321 1122 26899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHH---HHHHhhCCCccccCCCcccCCCCCCc
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASED---ELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
|+|+|++|.++|.....|...+- .....+.|+++|+||||+.. ..+.+ ++.++++..+
T Consensus 98 iLmyDitNeeSf~svqdw~tqIk-tysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfef---------------- 160 (193)
T KOG0093|consen 98 ILMYDITNEESFNSVQDWITQIK-TYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEF---------------- 160 (193)
T ss_pred EEEEecCCHHHHHHHHHHHHHhe-eeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHH----------------
Confidence 99999999999999999988874 44667999999999999973 22222 3666666555
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++|||.+.|++++|+.+...+
T Consensus 161 ----FEtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 161 ----FETSAKENINVKQVFERLVDII 182 (193)
T ss_pred ----hhhcccccccHHHHHHHHHHHH
Confidence 8899999999999999987654
|
|
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-26 Score=158.35 Aligned_cols=165 Identities=19% Similarity=0.322 Sum_probs=114.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+.||+++|++|||||||++++.++.+.. +.+|..... ..+.+++ ..+.+|||||++.+......++.++|++++|+
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 3689999999999999999999988764 445544332 3444443 57899999999988887777889999999999
Q ss_pred eCCChhhHHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH-HHHHhhCCCc--cccCCCcccCCCCCCccEEEE
Q 029453 96 DAYDKERFSESKR-ELDALLSDEALADVPFLILGNKIDIPYAASED-ELRYHMGLTN--FTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 96 d~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+++++++..... |+..+.. . ..+.|+++|+||+|+.+..... ++.. ..... +..+.. .+. ......++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~-~-~~~~piilv~nK~Dl~~~~~~~~~i~~-~~~~~v~~~~~~~---~~~-~~~~~~~~ 153 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKH-F-CPNVPIILVGNKKDLRNDEHTRRELAK-MKQEPVKPEEGRD---MAN-KIGAFGYM 153 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-h-CCCCCEEEEeeChhcccChhhhhhhhh-ccCCCccHHHHHH---HHH-HcCCcEEE
Confidence 9999988888754 5555532 2 2478999999999986432211 1111 00000 000000 000 01234799
Q ss_pred EEeeecCCChhHHHHhhhhh
Q 029453 172 MCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+|||++|.|++++|++|.+.
T Consensus 154 ~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 154 ECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred EeccccCcCHHHHHHHHHHH
Confidence 99999999999999999865
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=156.05 Aligned_cols=156 Identities=20% Similarity=0.199 Sum_probs=110.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEeCCe-EEEEEEcCChhh----h---HHhHHhhhccCCE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSIGKI-KFKAFDLGGHQM----A---RRVWKDYYAKVDA 90 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~----~---~~~~~~~~~~~d~ 90 (193)
+|+++|.+|||||||++++.+.... . ...|..+....+.+++. .+.+|||||+.. . ...+...+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 6899999999999999999876542 1 12355566666677665 899999999631 1 1122223456999
Q ss_pred EEEEEeCCCh-hhHHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDK-ERFSESKRELDALLSDE-ALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++ ++++....+...+.... ...++|+++|+||+|+.+.....+....+.... ...
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~---------------~~~ 146 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKEL---------------WGK 146 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhC---------------CCC
Confidence 9999999998 67877777777665432 124789999999999975433333222221110 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||+++.|+++++++|.+.+
T Consensus 147 ~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 147 PVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred CEEEEecCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998754
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=149.74 Aligned_cols=175 Identities=33% Similarity=0.556 Sum_probs=156.0
Q ss_pred HHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhc
Q 029453 7 FYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYA 86 (193)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 86 (193)
+..+++.+...+++.++.++|--|+|||+++-++--++...+.||.+.+.+.+.+.+.++.+||.+|+...+..|+.|+.
T Consensus 5 ~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~ 84 (182)
T KOG0072|consen 5 FSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYA 84 (182)
T ss_pred HHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhc
Confidence 44555666677799999999999999999999988888888999999999999999999999999999999999999999
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+.|++|||+|.+|.+++.-....+..++......+..+++++||.|..-.....|....++...+.. +
T Consensus 85 dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~------------r 152 (182)
T KOG0072|consen 85 DTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKD------------R 152 (182)
T ss_pred ccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhh------------h
Confidence 9999999999999999988888888888887777888999999999987778888888888777422 5
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
.+.++..||.+|+|++..++|+++.++
T Consensus 153 ~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 153 IWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred eeEEEeeccccccCCcHHHHHHHHHHh
Confidence 589999999999999999999988653
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=154.69 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=104.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-C--CCCCcceeEEEeCCeEEEEEEcCChhhh---------HHhHHhhhccC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQH-Q--PTQYPTSEELSIGKIKFKAFDLGGHQMA---------RRVWKDYYAKV 88 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~-~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~~ 88 (193)
.+|+++|++|||||||++++.+..+... . .|..........++..+.+|||||+... ..........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 4799999999999999999998876421 1 2444455555666789999999997321 01111112346
Q ss_pred CEEEEEEeCCChhhH--HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 89 DAVVYLIDAYDKERF--SESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 89 d~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
|++++|+|+++..++ .....++..+... ..+.|+++|+||+|+.......+...... ..
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~-----------------~~ 141 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEEEEE-----------------LE 141 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHHhhh-----------------hc
Confidence 899999999986543 4444555555322 14799999999999964333222111110 02
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++++||++|.|+++++++|.+.|
T Consensus 142 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 142 GEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred cCceEEEEecccCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=159.14 Aligned_cols=151 Identities=19% Similarity=0.254 Sum_probs=105.3
Q ss_pred ccEEEEEcCCCCCHHHHHH-HHhcCCcc------ccCCCCCc-cee------------EEEeCCeEEEEEEcCChhhhHH
Q 029453 20 EAKILFLGLDNSGKTTLLH-MLKDERLV------QHQPTQYP-TSE------------ELSIGKIKFKAFDLGGHQMARR 79 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~-~l~~~~~~------~~~~t~~~-~~~------------~~~~~~~~~~~~D~~g~~~~~~ 79 (193)
.+||+++|.+|||||||+. ++.++.+. .+.||.+. ... .+......+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 56554332 23455531 111 12223478999999999753
Q ss_pred hHHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC---------------------
Q 029453 80 VWKDYYAKVDAVVYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAA--------------------- 137 (193)
Q Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--------------------- 137 (193)
....+++++|++++|+|+++++++.... .|+..+... . .+.|+++|+||+|+....
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~-~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF-C-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh-C-CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 3445788999999999999999999886 466666432 2 478999999999985321
Q ss_pred CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+.++... + +. ...+.+++|||++|.|++++|+.+.++
T Consensus 158 ~~~e~~~-~--------------a~--~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRA-V--------------AK--ELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHH-H--------------HH--HhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 1111100 0 00 012478999999999999999998764
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=155.05 Aligned_cols=158 Identities=18% Similarity=0.273 Sum_probs=126.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccee--EEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSE--ELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
-..+-+||+++|.+++|||-|+.++..+++. ...+|.+.... .+..+ .....+|||.||++|+....+|++.+.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 3557899999999999999999999999988 45556665433 33444 4678999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|+++..+|+.+..|+.++. .+..+++++++|+||+||. +....++....-.. ...
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELR-dhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~-----------------~~l 151 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELR-DHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK-----------------EGL 151 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHH-hcCCCCeEEEEeecchhhhhccccchhhhHhHHHh-----------------cCc
Confidence 999999999999999999999996 4566799999999999996 33333332111111 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhh
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.++++||..+.|+++.|+.+...
T Consensus 152 ~f~EtSAl~~tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 152 FFLETSALDATNVEKAFERVLTE 174 (222)
T ss_pred eEEEecccccccHHHHHHHHHHH
Confidence 56999999999999999887654
|
|
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-25 Score=145.04 Aligned_cols=155 Identities=20% Similarity=0.261 Sum_probs=120.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
+..-+|++++|++|+|||+|++++...++.. ...|.+.. ...++.++ ..+.+|||.|+++|++....|++.+.+.
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA 85 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 85 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 3456799999999999999999999888764 33354433 33444443 6899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS--EDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|+++.++|..+..|+.... ....+++-+++++||.||.++.+ ..|....-.. ....
T Consensus 86 lLVYD~TsrdsfnaLtnWL~DaR-~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqE-----------------nel~ 147 (214)
T KOG0086|consen 86 LLVYDITSRDSFNALTNWLTDAR-TLASPNIVVILCGNKKDLDPEREVTFLEASRFAQE-----------------NELM 147 (214)
T ss_pred EEEEeccchhhHHHHHHHHHHHH-hhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcc-----------------ccee
Confidence 99999999999999999999884 34557888999999999974433 3232222111 2246
Q ss_pred EEEEeeecCCChhHHHHhhh
Q 029453 170 VFMCSIVRKMGYGEGFKWLS 189 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~ 189 (193)
+.++||++|+|++|.|-...
T Consensus 148 flETSa~TGeNVEEaFl~c~ 167 (214)
T KOG0086|consen 148 FLETSALTGENVEEAFLKCA 167 (214)
T ss_pred eeeecccccccHHHHHHHHH
Confidence 79999999999999886543
|
|
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-26 Score=148.83 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=125.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeE--EEeCCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEE--LSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
++--+||+++|++|+|||+|++++..+-+++ ...|.+.. ..+ +...+..+.+|||.|+++|++....|++.++++
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence 3456899999999999999999999888774 44455432 234 444568899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP-YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
|+|+|++...+|..+..|+.++-.. .....--++|+||+|+. +.+.++++-+++.... ..-+
T Consensus 84 ilvydiscqpsfdclpewlreie~y-an~kvlkilvgnk~d~~drrevp~qigeefs~~q----------------dmyf 146 (213)
T KOG0095|consen 84 ILVYDISCQPSFDCLPEWLREIEQY-ANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQ----------------DMYF 146 (213)
T ss_pred EEEEecccCcchhhhHHHHHHHHHH-hhcceEEEeeccccchhhhhhhhHHHHHHHHHhh----------------hhhh
Confidence 9999999999999999999998643 33456678999999997 3345555555544333 1346
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++-.|++.+|..+.-++
T Consensus 147 letsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 147 LETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hhhcccchhhHHHHHHHHHHHH
Confidence 8899999999999999886543
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=157.21 Aligned_cols=157 Identities=18% Similarity=0.310 Sum_probs=120.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEEe----CCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELSI----GKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
....+||+++|++|||||||++++..+.+. .+.+|.+.......+ +...+.+||++|++.+...+..++..++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 446789999999999999999988777765 455566654443332 457899999999999888888888999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
++|+|+++..++.....|+..+.... .+.|+++++||+|+.......+....... ..+.++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~ 146 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFHRK-----------------KNLQYY 146 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHHHH-----------------cCCEEE
Confidence 99999999999998888888876432 57899999999998632221111111100 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|.+|.+.+
T Consensus 147 e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 147 DISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
|
|
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=146.97 Aligned_cols=151 Identities=24% Similarity=0.395 Sum_probs=120.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCCc--ceeEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-TQYP--TSEELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-t~~~--~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.-++.+|+|.+|+|||+|+.++..+.+...+. |.+. ...++.++ ..++.+||+.|++.|+.+...+++..+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 44678999999999999999999888875443 4443 33444444 4789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-C-CCCHHH---HHHhhCCCccccCCCcccCCCCCCccE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP-Y-AASEDE---LRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~-~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|+|+++.++|.....|+.++.+.. +..|-++|+||.|.+ + ....++ +...+++
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgi-------------------- 144 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGI-------------------- 144 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHHhcCc--------------------
Confidence 999999999999999999995432 578899999999997 2 222222 3333333
Q ss_pred EEEEEeeecCCChhHHHHhhhhh
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
..|++||++++|++..|..|.++
T Consensus 145 e~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 145 ELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred hheehhhhhcccchHHHHHHHHH
Confidence 45899999999999999998764
|
|
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-25 Score=142.53 Aligned_cols=166 Identities=35% Similarity=0.606 Sum_probs=149.4
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCC-eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK-IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
....+++||+++|-.++|||||+.++.+.......||.+.+...+.+.+ +.+.+||.+|+...+..|.-|+.+.|.+||
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 3457999999999999999999999998888888899999999999876 899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|.+|...|++....+.+++...+....|+.+..||-|+..+...++....+++.-++ .+.+.+..|
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lr------------dRswhIq~c 159 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLR------------DRSWHIQEC 159 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhh------------hceEEeeeC
Confidence 99999999999999999999988888899999999999999888888888777766532 156899999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
|+.+++|+.+-.+|++...
T Consensus 160 sals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 160 SALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred ccccccCccCcchhhhcCC
Confidence 9999999999999998654
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=152.59 Aligned_cols=149 Identities=21% Similarity=0.209 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc-------c-ccCC----------CCCcceeEEEe-----CCeEEEEEEcCChhhhH
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL-------V-QHQP----------TQYPTSEELSI-----GKIKFKAFDLGGHQMAR 78 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~-------~-~~~~----------t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~ 78 (193)
+|+++|++|+|||||++++.+... . ...+ +.........+ .+..+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 689999999999999999986421 1 0111 11111222222 45778999999999998
Q ss_pred HhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccccCC
Q 029453 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFTTGK 155 (193)
Q Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~ 155 (193)
..+..++..+|++++|+|+++..+.+....+.... . .++|+++|+||+|+...... +++.+.++..
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~------ 150 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD------ 150 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC------
Confidence 88888999999999999999865554444443222 1 46899999999998643221 2233332221
Q ss_pred CcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 156 GNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...++++||++|.|+++++++|.+.+
T Consensus 151 -----------~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 151 -----------PSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred -----------cccEEEeeccCCCCHHHHHHHHHhhC
Confidence 13589999999999999999998764
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=165.83 Aligned_cols=155 Identities=22% Similarity=0.244 Sum_probs=113.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEe-CCeEEEEEEcCChhh-------hHHhHHhhhccCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSI-GKIKFKAFDLGGHQM-------ARRVWKDYYAKVD 89 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 89 (193)
..|+++|.||||||||++++.+.+.. ..+ +|..++...+.+ ....+.+||+||..+ ....+..+++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 47999999999999999999876533 222 367778888887 457899999999632 2233445677899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHH--HHHhhCCCccccCCCcccCCCCCCc
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDE-ALADVPFLILGNKIDIPYAASEDE--LRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
++++|+|+++.++++....|...+.... ...++|+++|+||+|+.......+ ..... .. .
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~--~~---------------~ 301 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALEL--AA---------------L 301 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHH--Hh---------------c
Confidence 9999999998777777777777765432 124789999999999974332221 11111 11 1
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++++|+++++++|.+.+
T Consensus 302 ~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 302 GGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 24789999999999999999998765
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-25 Score=154.97 Aligned_cols=166 Identities=16% Similarity=0.286 Sum_probs=110.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+.||+++|++|||||||++++..+.+.. ..+|..... ..+...+ ..+.+||++|++.+.......+..++++++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 3589999999999999999998776653 333333222 2333343 56889999999887766666678999999999
Q ss_pred eCCChhhHHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 96 DAYDKERFSESKR-ELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 96 d~~~~~~~~~~~~-~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
|+++.+++..+.. |+..+... .++.|+++|+||+|+.......+............+. ..+ ...+...+++||
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~e~S 154 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGK---RVA-KEIGAKKYMECS 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHH---HHH-HHhCCcEEEEcc
Confidence 9999999988864 66655432 2469999999999985321110000000000000000 000 001234789999
Q ss_pred eecCCChhHHHHhhhhh
Q 029453 175 IVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~ 191 (193)
|++|.|++++|+++.+.
T Consensus 155 a~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 155 ALTGEGVDDVFEAATRA 171 (187)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999999864
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=164.73 Aligned_cols=154 Identities=20% Similarity=0.255 Sum_probs=108.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhh-H-------HhHHhhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMA-R-------RVWKDYY 85 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~-~-------~~~~~~~ 85 (193)
.+..+|+++|.+|||||||+|++.+..+....+ |.......+..++..+.+|||||+.+. . ......+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 456799999999999999999999887653322 444445566778889999999997421 1 1111246
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
..+|++++|+|..+. +.....++...+.. .+.|+++|+||+|+... ...++.+.+....
T Consensus 130 ~~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~--------------- 188 (339)
T PRK15494 130 HSADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTENH--------------- 188 (339)
T ss_pred hhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhcC---------------
Confidence 789999999998763 44444333333332 25677889999998643 3334444433221
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....++++||++|.|+++++++|.+.+
T Consensus 189 ~~~~i~~iSAktg~gv~eL~~~L~~~l 215 (339)
T PRK15494 189 PDSLLFPISALSGKNIDGLLEYITSKA 215 (339)
T ss_pred CCcEEEEEeccCccCHHHHHHHHHHhC
Confidence 235799999999999999999998764
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-24 Score=152.65 Aligned_cols=153 Identities=19% Similarity=0.235 Sum_probs=107.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCe-EEEEEEcCChhh---------hHHhHHhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKI-KFKAFDLGGHQM---------ARRVWKDY 84 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~---------~~~~~~~~ 84 (193)
...++|+++|++|||||||++++.+..... ..+|..+....+.+++. .+.+|||||+.. +...+ ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 456899999999999999999999886432 22345555556666554 899999999722 22222 23
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+..+|++++|+|++++.+......+...+ ......++|+++|+||+|+.+..... ....
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~----------------- 176 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---ERLE----------------- 176 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---HHhh-----------------
Confidence 56799999999999887665544444333 33334578999999999996543221 1110
Q ss_pred CccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....+++++||+++.|+++++++|.+.|
T Consensus 177 ~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 177 AGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 0235789999999999999999998764
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-25 Score=148.22 Aligned_cols=141 Identities=25% Similarity=0.320 Sum_probs=100.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChh------hhHHhHHhhh--ccCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQ------MARRVWKDYY--AKVD 89 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~------~~~~~~~~~~--~~~d 89 (193)
++|+++|+||||||||+|++.+.+.. ...| |.......+.+++..+.++|+||.. ........++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 58999999999999999999998854 3334 6667778889999999999999932 1223333343 5799
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC----CCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA----ASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
++++|+|+++.+ ........+.. .++|+++++||+|+.+. ...+.+.+.++
T Consensus 81 ~ii~VvDa~~l~---r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg------------------ 135 (156)
T PF02421_consen 81 LIIVVVDATNLE---RNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG------------------ 135 (156)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT------------------
T ss_pred EEEEECCCCCHH---HHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC------------------
Confidence 999999998764 33333444433 37999999999998622 22334555543
Q ss_pred ccEEEEEEeeecCCChhHHHHhh
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWL 188 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i 188 (193)
++++++||++++|++++++.|
T Consensus 136 --~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 136 --VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp --S-EEEEBTTTTBTHHHHHHHH
T ss_pred --CCEEEEEeCCCcCHHHHHhhC
Confidence 367999999999999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-24 Score=159.23 Aligned_cols=150 Identities=17% Similarity=0.173 Sum_probs=101.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhh--------HHhHHhhhccCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMA--------RRVWKDYYAKVD 89 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~~d 89 (193)
+|+++|.+|||||||+|++.+.+....++ |..........++..+.+|||||.... .......+..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999987643222 333333334455678999999996432 112234578899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+.....+....+.... ...+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---------------~~~~ 140 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAILE---------------DFKD 140 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhhc---------------CCCc
Confidence 999999999875443 222333222 4789999999999963221111111111111 1137
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 141 v~~iSA~~g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 141 IVPISALTGDNTSFLAAFIEVHL 163 (270)
T ss_pred eEEEecCCCCCHHHHHHHHHHhC
Confidence 89999999999999999998764
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-24 Score=149.01 Aligned_cols=151 Identities=20% Similarity=0.127 Sum_probs=100.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc---c-c--CCCCCcceeEEEeC-CeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV---Q-H--QPTQYPTSEELSIG-KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~---~-~--~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
.|+++|++|||||||++++.+.... . . ..|.......+.+. +..+.+|||||++++......++..+|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 6899999999999999999864321 1 1 11333333445555 77899999999998877777778899999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE----DELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+++... ......+..+ ... ...|+++++||+|+...... +++.+.+.... ....++
T Consensus 82 ~d~~~~~~-~~~~~~~~~~-~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 143 (164)
T cd04171 82 VAADEGIM-PQTREHLEIL-ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--------------LADAPI 143 (164)
T ss_pred EECCCCcc-HhHHHHHHHH-HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC--------------cCCCcE
Confidence 99987311 1111111111 111 12499999999999643211 22222222110 023579
Q ss_pred EEEeeecCCChhHHHHhhhh
Q 029453 171 FMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~ 190 (193)
+++||++|.|+++++++|..
T Consensus 144 ~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 144 FPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEEeCCCCcCHHHHHHHHhh
Confidence 99999999999999999864
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.8e-24 Score=161.04 Aligned_cols=157 Identities=20% Similarity=0.216 Sum_probs=114.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-cc--CCCCCcceeEEEeCC-eEEEEEEcCChhh-------hHHhHHhhhccCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QH--QPTQYPTSEELSIGK-IKFKAFDLGGHQM-------ARRVWKDYYAKVD 89 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~d 89 (193)
..|+++|.+|||||||++++.+.+.. .. .+|..++...+.+.+ ..+.+||+||..+ ....+...+++++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 47999999999999999999976533 22 236677788888876 8999999999642 2233344567899
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 90 AVVYLIDAYDK---ERFSESKRELDALLSDE-ALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 90 ~ii~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
++++|+|+++. ++++....+...+.... ...++|+++|+||+|+......+++.+.+....
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~--------------- 302 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKAL--------------- 302 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHc---------------
Confidence 99999999976 55666666665554321 235789999999999975433333333332111
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
..+++++||++++|+++++++|.+.+.
T Consensus 303 -~~~vi~iSAktg~GI~eL~~~I~~~l~ 329 (329)
T TIGR02729 303 -GKPVFPISALTGEGLDELLYALAELLE 329 (329)
T ss_pred -CCcEEEEEccCCcCHHHHHHHHHHHhC
Confidence 146899999999999999999988763
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=149.19 Aligned_cols=169 Identities=20% Similarity=0.299 Sum_probs=117.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe----CCeEEEEEEcCChhhhHHhHHhhhccC-CEEEEEEe
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSI----GKIKFKAFDLGGHQMARRVWKDYYAKV-DAVVYLID 96 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~-d~ii~v~d 96 (193)
+|+++|++|||||||++++..+.+..+.++..+....... .+..+.+||+|||.+++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998876555544444444433 257899999999999988888888998 99999999
Q ss_pred CCCh-hhHHHHHHHHHHHHhCC--CCCCCcEEEEeeCCCCCCCCCHHH----HHHhhCCCccccCC--------Ccc---
Q 029453 97 AYDK-ERFSESKRELDALLSDE--ALADVPFLILGNKIDIPYAASEDE----LRYHMGLTNFTTGK--------GNV--- 158 (193)
Q Consensus 97 ~~~~-~~~~~~~~~~~~~~~~~--~~~~~pviiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~--------~~~--- 158 (193)
+++. +++.....++..++... ...+.|+++++||+|+......+. ++.+++...-.+.. ...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 56666666665554321 125799999999999986555443 33222211111000 000
Q ss_pred -------cCC-CCCCccEEEEEEeeecCC-ChhHHHHhhhh
Q 029453 159 -------NLD-NTNVRPLEVFMCSIVRKM-GYGEGFKWLSQ 190 (193)
Q Consensus 159 -------~~~-~~~~~~~~~~~~Sa~~~~-gi~~~~~~i~~ 190 (193)
... ......+.++.+|++.+. |++++.+||.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 000 011135789999998887 69999999975
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=145.82 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcceeEEEe---CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYPTSEELSI---GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
.|+++|.+|||||||++++..+.+.... .|.......+.. .+..+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 6899999999999999999988765431 122222233343 3678999999999988888888889999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|+++....+ ....+..+ .. .++|+++|+||+|+.... .+.+...+...... .. ......++++++|+
T Consensus 82 d~~~~~~~~-~~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~Sa 148 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQ-GE------DEWGGDVQIVPTSA 148 (168)
T ss_pred ECCCCccHH-HHHHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhcc-cc------ccccCcCcEEEeec
Confidence 998753211 11122222 22 478999999999986332 22222222111000 00 00113468999999
Q ss_pred ecCCChhHHHHhhhhh
Q 029453 176 VRKMGYGEGFKWLSQY 191 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~ 191 (193)
++|.|+++++++|.+.
T Consensus 149 ~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 149 KTGEGIDDLLEAILLL 164 (168)
T ss_pred ccCCCHHHHHHHHHHh
Confidence 9999999999999865
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=138.98 Aligned_cols=159 Identities=21% Similarity=0.321 Sum_probs=124.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce----eEEEe-CCeEEEEEEcCChhhhHHhHHhhhccCC
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS----EELSI-GKIKFKAFDLGGHQMARRVWKDYYAKVD 89 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~----~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d 89 (193)
.....+++.++|.+-+|||||++.+..+++.. ..||.+... ..++- ....+.+|||.|+++|++....|+.+.-
T Consensus 4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 45678999999999999999999999999884 456665432 12222 2368999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
++++|+|.+|.++|+-...|+.+.......+.++ ..+|++|+||. +..+.+|.+..-.. .
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~-----------------h 146 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAAS-----------------H 146 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHh-----------------c
Confidence 9999999999999999999998876554434444 57788999997 44454443222111 2
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhh
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...++++||++|.|+++.|..|.+.
T Consensus 147 gM~FVETSak~g~NVeEAF~mlaqe 171 (213)
T KOG0091|consen 147 GMAFVETSAKNGCNVEEAFDMLAQE 171 (213)
T ss_pred CceEEEecccCCCcHHHHHHHHHHH
Confidence 2467999999999999999998764
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=149.06 Aligned_cols=157 Identities=20% Similarity=0.268 Sum_probs=101.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCeEEEEEEcCC-----------hhhhHHhHHhhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGG-----------HQMARRVWKDYY 85 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~ 85 (193)
...++|+++|++|||||||++++.+..+.. ..++.......+.++ .+.+||||| ++.+...+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999877542 233322223333333 689999999 456665555554
Q ss_pred c----cCCEEEEEEeCCChhhHH---------HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCc
Q 029453 86 A----KVDAVVYLIDAYDKERFS---------ESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTN 150 (193)
Q Consensus 86 ~----~~d~ii~v~d~~~~~~~~---------~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~ 150 (193)
. .++++++|+|.+....+. .....+...+.. .++|+++|+||+|+.... ..+++.+.++...
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP 161 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence 3 467889999986532110 011122222222 479999999999996433 2233444444311
Q ss_pred -cccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 151 -FTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 151 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+. ....+++++||++| |+++++++|.+.+
T Consensus 162 ~~~------------~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 162 PWR------------QWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred ccc------------ccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 00 01136899999999 9999999998754
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=147.01 Aligned_cols=163 Identities=18% Similarity=0.160 Sum_probs=111.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccC-------------------CCCCcceeEEEeCCeEEEEEEcCChhhhHHhHH
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQ-------------------PTQYPTSEELSIGKIKFKAFDLGGHQMARRVWK 82 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (193)
+|+++|.+|||||||++.+.+....... .+...........+..+.+|||||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999877655322 122233445566778999999999998888888
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH----HHHHhhCCCccccCCCcc
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASED----ELRYHMGLTNFTTGKGNV 158 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~ 158 (193)
.++..+|++++|+|++++.... ....+..+. . .+.|+++++||+|+....... ++.+.++.......+
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~-~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 152 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIAR-E---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTK--- 152 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH-HHHHHHHHH-H---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchh---
Confidence 8889999999999998764322 223333332 2 479999999999997533322 233333221100000
Q ss_pred cCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 159 NLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..........+++++||++|.|+++++++|.+++
T Consensus 153 ~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 0000011357899999999999999999998875
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-24 Score=145.04 Aligned_cols=134 Identities=22% Similarity=0.271 Sum_probs=91.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChh-----hhHHhHHhhhccCCEEEEEEe
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQ-----MARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~d~ii~v~d 96 (193)
||+++|++|||||||++++.+.... ..+| ....+.. .+|||||+. .+.... ..++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t-----~~~~~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKT-----QAVEYND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccc-----eeEEEcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEec
Confidence 8999999999999999999887642 2222 2233333 689999973 233332 34789999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
++++.++.. ..+ .... ..|+++|+||+|+.+. ...++........ ...+++++||
T Consensus 72 ~~~~~s~~~-~~~-~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa 127 (142)
T TIGR02528 72 ATDPESRFP-PGF-ASIF------VKPVIGLVTKIDLAEADVDIERAKELLETA----------------GAEPIFEISS 127 (142)
T ss_pred CCCCCcCCC-hhH-HHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHc----------------CCCcEEEEec
Confidence 999876643 222 2221 2499999999999642 2222222222111 1136899999
Q ss_pred ecCCChhHHHHhhh
Q 029453 176 VRKMGYGEGFKWLS 189 (193)
Q Consensus 176 ~~~~gi~~~~~~i~ 189 (193)
++|.|++++|++|.
T Consensus 128 ~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 128 VDEQGLEALVDYLN 141 (142)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999999985
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=147.68 Aligned_cols=153 Identities=21% Similarity=0.222 Sum_probs=106.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEeC-CeEEEEEEcCChhhh----HH---hHHhhhccCCEEEE
Q 029453 25 FLGLDNSGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSIG-KIKFKAFDLGGHQMA----RR---VWKDYYAKVDAVVY 93 (193)
Q Consensus 25 i~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~----~~---~~~~~~~~~d~ii~ 93 (193)
++|++|||||||++++.+.... . ..+|..+....+.++ +..+.+|||||+... .. .+...+..+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 5899999999999999988642 1 123455666667777 889999999997321 11 22345678999999
Q ss_pred EEeCCCh------hhHHHHHHHHHHHHhCCC------CCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCC
Q 029453 94 LIDAYDK------ERFSESKRELDALLSDEA------LADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 94 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
|+|+++. .++.....+...+..... ..+.|+++|+||+|+.......+........
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~------------ 148 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELAL------------ 148 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhc------------
Confidence 9999987 456666666666643322 1479999999999997443333321001111
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....++++||+++.|+++++++|...+
T Consensus 149 ---~~~~~~~~~Sa~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 149 ---EEGAEVVPISAKTEEGLDELIRAIYELL 176 (176)
T ss_pred ---CCCCCEEEEehhhhcCHHHHHHHHHhhC
Confidence 1235689999999999999999997653
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-23 Score=140.65 Aligned_cols=153 Identities=22% Similarity=0.341 Sum_probs=111.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
.+||+++|.+|||||||++++.+..... ..++..... ..+..++ ..+.+||+||+..+...+......++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3699999999999999999999888542 333443333 2355666 7789999999999988888888889999999
Q ss_pred EeCCCh-hhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDK-ERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|.... .++.... .+...+..... .+.|+++++||+|+.......+....+.... ..++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~ 143 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKLN----------------GEPIIP 143 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhcc----------------CCceEE
Confidence 999765 5555444 44444443322 3789999999999975433333333332221 235999
Q ss_pred EeeecCCChhHHHHhhh
Q 029453 173 CSIVRKMGYGEGFKWLS 189 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~ 189 (193)
+||++|.|+++++++|.
T Consensus 144 ~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 144 LSAETGKNIDSAFKIVE 160 (161)
T ss_pred eecCCCCCHHHHHHHhh
Confidence 99999999999999974
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=147.25 Aligned_cols=156 Identities=23% Similarity=0.304 Sum_probs=127.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+.+||+++|.+|+|||+|..++.++.+.. +.||.+.. ...+.. ....+.++||+|++++..+...++..++++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 56899999999999999999999999884 45666532 233333 346788999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+++++..+|+....++..+.+.......|+++|+||+|+.+ ..+.++-..- . . .+.+.+++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~l-a-~---------------~~~~~f~E 144 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKAL-A-R---------------SWGCAFIE 144 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHH-H-H---------------hcCCcEEE
Confidence 99999999999999999997666667799999999999984 5555542222 0 0 13456899
Q ss_pred EeeecCCChhHHHHhhhhh
Q 029453 173 CSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~ 191 (193)
+||+.+.+++++|..|...
T Consensus 145 ~Sak~~~~v~~~F~~L~r~ 163 (196)
T KOG0395|consen 145 TSAKLNYNVDEVFYELVRE 163 (196)
T ss_pred eeccCCcCHHHHHHHHHHH
Confidence 9999999999999998764
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-23 Score=147.68 Aligned_cols=115 Identities=17% Similarity=0.338 Sum_probs=94.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEe-------CCeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSI-------GKIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
+||+++|.+|+|||||++++.++.+.. +.+|.+... ..+.+ ....+.+||++|++.+..+...+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999988764 445655322 23333 23679999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCC------------------CCCCCcEEEEeeCCCCCC
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDE------------------ALADVPFLILGNKIDIPY 135 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~pviiv~nK~Dl~~ 135 (193)
+|+|+|++++++++.+..|+..+.... ...+.|+++|+||+|+.+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 999999999999999999999886531 224789999999999963
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=142.73 Aligned_cols=145 Identities=21% Similarity=0.266 Sum_probs=100.1
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHH--------hHHhhhccCCEE
Q 029453 24 LFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARR--------VWKDYYAKVDAV 91 (193)
Q Consensus 24 ~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~d~i 91 (193)
+++|.+|+|||||++++.+.... ...+ |...........+..+.+|||||+..... .....+..+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 47999999999999999987532 2222 33344556667788999999999876433 334456789999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
++|+|+.+..+... ..+...+.. .+.|+++|+||+|+.......+....+ ...+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~-------------------~~~~~~ 136 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSL-------------------GFGEPI 136 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhc-------------------CCCCeE
Confidence 99999987533222 233333333 369999999999997532221111111 112578
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++|+++|.|+++++++|.+++
T Consensus 137 ~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 137 PISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred EEecccCCCHHHHHHHHHhhC
Confidence 999999999999999998764
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-23 Score=139.66 Aligned_cols=150 Identities=25% Similarity=0.335 Sum_probs=111.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCc-c-ccCCCCCcceeEEEeC----CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC
Q 029453 25 FLGLDNSGKTTLLHMLKDERL-V-QHQPTQYPTSEELSIG----KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 25 i~G~~~~GKssl~~~l~~~~~-~-~~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
++|++|+|||||++++.+... . ...++. ......... +..+.+||+||+..........++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998876 2 223333 444444433 678999999999988887788889999999999999
Q ss_pred ChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHH-HhhCCCccccCCCcccCCCCCCccEEEEEEeeec
Q 029453 99 DKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELR-YHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177 (193)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++.+......++..........+.|+++++||+|+.......... ....... ...+++++|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~s~~~ 144 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKE---------------LGVPYFETSAKT 144 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhh---------------cCCcEEEEecCC
Confidence 998887777764444444455789999999999997544433321 1111111 336899999999
Q ss_pred CCChhHHHHhhhh
Q 029453 178 KMGYGEGFKWLSQ 190 (193)
Q Consensus 178 ~~gi~~~~~~i~~ 190 (193)
+.|+++++++|.+
T Consensus 145 ~~~i~~~~~~l~~ 157 (157)
T cd00882 145 GENVEELFEELAE 157 (157)
T ss_pred CCChHHHHHHHhC
Confidence 9999999999863
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=156.39 Aligned_cols=151 Identities=20% Similarity=0.231 Sum_probs=108.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-c--cCCCCCcceeEEEe-CCeEEEEEEcCCh---------hhhHHhHHhhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-Q--HQPTQYPTSEELSI-GKIKFKAFDLGGH---------QMARRVWKDYY 85 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~-~~~~~~~~D~~g~---------~~~~~~~~~~~ 85 (193)
..++|+++|.+|||||||+|++.+.... . ..+|.++....+.+ ++..+.+|||+|. +.+...+ ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 4489999999999999999999987743 2 23466777777777 5689999999997 2233332 346
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
.++|++++|+|++++.+......+. .++......++|+++|+||+|+.+.. ++.....
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~-~~L~~l~~~~~piIlV~NK~Dl~~~~---~v~~~~~------------------ 324 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVE-KVLEELGAEDIPQLLVYNKIDLLDEP---RIERLEE------------------ 324 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHH-HHHHHhccCCCCEEEEEEeecCCChH---hHHHHHh------------------
Confidence 7899999999999887655543333 33333333578999999999996421 1111000
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 325 ~~~~~i~iSAktg~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 325 GYPEAVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred CCCCEEEEEccCCCCHHHHHHHHHhhC
Confidence 012579999999999999999998753
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.8e-23 Score=149.01 Aligned_cols=155 Identities=17% Similarity=0.230 Sum_probs=114.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhhH--------HhHHhhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMAR--------RVWKDYY 85 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~ 85 (193)
.+.--|+++|.||+|||||+|++.+.+..-.++ |+..-......++.++.++||||..+.. ......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 456689999999999999999999999764333 4444556666778999999999943322 2223346
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+.+|++++|+|++++ +.....++...+.. .+.|+++++||+|+..... ...+...+....
T Consensus 84 ~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~-------------- 144 (298)
T COG1159 84 KDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLL-------------- 144 (298)
T ss_pred ccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhC--------------
Confidence 789999999999885 23444444444433 4689999999999876555 344555544443
Q ss_pred CccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|++.+.+.|..++
T Consensus 145 -~f~~ivpiSA~~g~n~~~L~~~i~~~L 171 (298)
T COG1159 145 -PFKEIVPISALKGDNVDTLLEIIKEYL 171 (298)
T ss_pred -CcceEEEeeccccCCHHHHHHHHHHhC
Confidence 445899999999999999999998775
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-23 Score=163.01 Aligned_cols=151 Identities=19% Similarity=0.205 Sum_probs=105.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhh--------hHHhHHhhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQM--------ARRVWKDYY 85 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 85 (193)
...++|+++|.+|||||||+|++.+.......+ |.........+++..+.+|||||++. +......++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 455799999999999999999999876543222 33334455667788899999999752 334445578
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
+.+|++++|+|++++.+... ..+...+.. .++|+++|+||+|+..... +....+....
T Consensus 116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g~--------------- 173 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSLGL--------------- 173 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhcCC---------------
Confidence 89999999999998754332 233333332 4799999999999864221 1111111111
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
-..+++||++|.|+++++++|.+.+
T Consensus 174 --~~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 174 --GEPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred --CCeEEEEcCCCCCcHHHHHHHHhhc
Confidence 1247999999999999999998754
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=144.77 Aligned_cols=157 Identities=17% Similarity=0.128 Sum_probs=101.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC----ccc------cCCCCCcceeEEEeC--------------CeEEEEEEcCChhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER----LVQ------HQPTQYPTSEELSIG--------------KIKFKAFDLGGHQM 76 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~----~~~------~~~t~~~~~~~~~~~--------------~~~~~~~D~~g~~~ 76 (193)
++|+++|++|+|||||++++.+.. +.. ...|.......+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999998631 111 112333333333333 67899999999987
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH----HHHHhhCCCccc
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASED----ELRYHMGLTNFT 152 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~----~~~~~~~~~~~~ 152 (193)
+........+.+|++++|+|+++....+....+. +... .+.|+++++||+|+......+ ++.+.+.... .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~-~ 154 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTL-E 154 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHH-H
Confidence 6555555567789999999998753333222221 1111 267999999999987432222 2222221111 0
Q ss_pred cCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 153 TGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.. .....+++++||++|.|+++++++|.+++
T Consensus 155 ~~---------~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 155 KT---------RFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred hc---------CcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 00 00235799999999999999999998764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=139.37 Aligned_cols=143 Identities=22% Similarity=0.219 Sum_probs=102.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--cCC--CCCcceeEEEeCCeEEEEEEcCChhhhHH--------hHHhhhccC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ--HQP--TQYPTSEELSIGKIKFKAFDLGGHQMARR--------VWKDYYAKV 88 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~ 88 (193)
++|+++|++|+|||||++++.+..... ..+ +.......+...+..+.+|||||+..... .....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 589999999999999999999877432 122 22233445666778999999999654321 122356789
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|++++|+|++++.+......+.. ..+.|+++|+||+|+...... ... ....
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~--------~~~--------------~~~~ 132 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL--------LSL--------------LAGK 132 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc--------ccc--------------cCCC
Confidence 99999999998655544433222 257999999999999743322 000 1235
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||+++.|+++++++|.+.+
T Consensus 133 ~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 133 PIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh
Confidence 789999999999999999998765
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=139.81 Aligned_cols=154 Identities=21% Similarity=0.247 Sum_probs=104.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhhH--------HhHHhhhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMAR--------RVWKDYYA 86 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~ 86 (193)
...+|+++|++|||||||++++.+.+.....+ +...........+..+.+|||||..... ......+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999876543222 1122223334456789999999964322 22334567
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-CCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP-YAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
.+|++++|+|++++. .....++...+.. .+.|+++|+||+|+. ......++...+....
T Consensus 82 ~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--------------- 141 (168)
T cd04163 82 DVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELG--------------- 141 (168)
T ss_pred hCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhcc---------------
Confidence 899999999999872 2223333333322 268999999999997 3333333443333222
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++|++++.|+++++++|.+.+
T Consensus 142 ~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 142 PFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred CCCceEEEEeccCCChHHHHHHHHhhC
Confidence 235789999999999999999998764
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-23 Score=145.39 Aligned_cols=162 Identities=20% Similarity=0.174 Sum_probs=110.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--c-------------------cCCCCCcceeEEE--eCCeEEEEEEcCChh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--Q-------------------HQPTQYPTSEELS--IGKIKFKAFDLGGHQ 75 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~-------------------~~~t~~~~~~~~~--~~~~~~~~~D~~g~~ 75 (193)
+..+|+++|+.++|||||+++|...... . ..-|.......+. ..+..+.++|||||.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 5679999999999999999999743311 0 1114444555666 778999999999999
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCC
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGK 155 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 155 (193)
.+.......+..+|++|+|+|+.++- ......+...+.. .++|+++++||+|+.. ....+..+++....++...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~--~~~~~~~l~~~~~---~~~p~ivvlNK~D~~~-~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGI--QPQTEEHLKILRE---LGIPIIVVLNKMDLIE-KELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBS--THHHHHHHHHHHH---TT-SEEEEEETCTSSH-HHHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeeccccc--ccccccccccccc---cccceEEeeeeccchh-hhHHHHHHHHHHHhccccc
Confidence 99888888899999999999998763 2323332333323 4789999999999971 1111222222111111100
Q ss_pred CcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 156 GNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.. .....+++++||++|.|++++++.|.+.+
T Consensus 156 ~~------~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 156 EN------GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp ST------TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cC------ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 00 00257999999999999999999998765
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-23 Score=140.55 Aligned_cols=145 Identities=23% Similarity=0.212 Sum_probs=100.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHH------hHHhhh--ccCCEEEE
Q 029453 25 FLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARR------VWKDYY--AKVDAVVY 93 (193)
Q Consensus 25 i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~d~ii~ 93 (193)
++|.+|+|||||++++.+.... ...+ |.......+.+++..+.+|||||+..+.. ....++ +.+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5799999999999999887633 2222 44555666777788999999999876542 234445 48999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|+++++.. ..++..+.. .++|+++|+||+|+............+... ...+++++
T Consensus 81 v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~----------------~~~~~~~i 137 (158)
T cd01879 81 VVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSEL----------------LGVPVVPT 137 (158)
T ss_pred EeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHHh----------------hCCCeEEE
Confidence 9999876432 223333322 378999999999997432221111111100 11468999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|+++++++|.+..
T Consensus 138 Sa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 138 SARKGEGIDELKDAIAELA 156 (158)
T ss_pred EccCCCCHHHHHHHHHHHh
Confidence 9999999999999998764
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=160.79 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=108.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCCh----------hhhHHhH-Hh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGH----------QMARRVW-KD 83 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~-~~ 83 (193)
..++|+++|.+|||||||+|++.+.... ...+ |.......+.+++..+.+|||||. +.+.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4689999999999999999999988753 2222 444445667778888999999995 2222221 23
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
++..+|++++|+|++++.+.+... ++..+.. .++|+++|+||+|+................. .
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l-~----------- 352 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDREL-A----------- 352 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhc-c-----------
Confidence 578899999999999886665543 3333332 4789999999999974322222222221111 0
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....+++++||++|.|++++|+.|.+.+
T Consensus 353 ~~~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 353 QVPWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 00225789999999999999999997643
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=138.51 Aligned_cols=157 Identities=20% Similarity=0.239 Sum_probs=121.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCC--cceeEEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-TQY--PTSEELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..-++|++++|..=+|||||+-+++.++|..... |.. .....++. ....+.+|||.|+++|...-+-|+...+++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 4467999999999999999999999888764332 111 12223333 345799999999999999988999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++|+++|+....|..++.... ...+-++||+||+||. +..+.++.+..-.-. ...
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesv-----------------GA~ 151 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTML-GNEIELLIVGNKIDLEEERQVTRQEAEAYAESV-----------------GAL 151 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHh-CCeeEEEEecCcccHHHhhhhhHHHHHHHHHhh-----------------chh
Confidence 99999999999999999999986433 3568899999999996 445554433322111 135
Q ss_pred EEEEeeecCCChhHHHHhhhhh
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
++++||+.+.||.++|+-|..+
T Consensus 152 y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 152 YMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred heecccccccCHHHHHHHHHHH
Confidence 6899999999999999988654
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=152.35 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=104.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhh--------HHhHHhhhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMA--------RRVWKDYYA 86 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~ 86 (193)
+.-.|+++|++|||||||+|.+.+.+.....+ |..........++..+.++||||.... .......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 56679999999999999999999887653322 222222233345678999999996432 122234567
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
.+|++++|+|+++. +.....++...+.. .+.|+++|+||+|+... ....+....+....
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~--------------- 143 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSELM--------------- 143 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhC---------------
Confidence 89999999999883 23333344444332 46899999999999732 22223333332211
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||+++.|+++++++|.+.+
T Consensus 144 ~~~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 144 DFAEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred CCCeEEEecCCCCCCHHHHHHHHHHhC
Confidence 235799999999999999999998764
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=159.87 Aligned_cols=146 Identities=19% Similarity=0.235 Sum_probs=107.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHHh--------HHhh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARRV--------WKDY 84 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 84 (193)
....++|+++|.+|||||||+|++.+.... ...+ |.+.....+.+++..+.+|||||+...... ...+
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 346689999999999999999999987642 2222 444555667788899999999997643221 2235
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+..+|++++|+|++++.+......+ .. ..+.|+++|+||+|+.+..... ..
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l-~~------~~~~piiiV~NK~DL~~~~~~~--------~~-------------- 342 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEIL-EE------LKDKPVIVVLNKADLTGEIDLE--------EE-------------- 342 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHH-Hh------cCCCCcEEEEEhhhccccchhh--------hc--------------
Confidence 7889999999999988665533222 22 2578999999999996432221 01
Q ss_pred CccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 343 -~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 343 -NGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred -cCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 224689999999999999999998754
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=139.67 Aligned_cols=140 Identities=19% Similarity=0.170 Sum_probs=94.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChh----hhHHhHHhhhccCCEEEEEEeC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQ----MARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
+|+++|.+|+|||||+|++.+.... ......+.+... .+|||||.. ++.......+..+|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~------~~~~~~v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL------ARKTQAVEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc------CccceEEEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 7999999999999999998764311 122333344332 379999962 2322223447889999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++.+++ ...++..+ ..++|+++++||+|+.. ...+++.+...... ...+++++||++
T Consensus 75 ~~~~s~--~~~~~~~~-----~~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~~---------------~~~p~~~~Sa~~ 131 (158)
T PRK15467 75 NDPESR--LPAGLLDI-----GVSKRQIAVISKTDMPD-ADVAATRKLLLETG---------------FEEPIFELNSHD 131 (158)
T ss_pred CCcccc--cCHHHHhc-----cCCCCeEEEEEccccCc-ccHHHHHHHHHHcC---------------CCCCEEEEECCC
Confidence 987654 22333332 13679999999999854 33333333222111 114899999999
Q ss_pred CCChhHHHHhhhhhc
Q 029453 178 KMGYGEGFKWLSQYI 192 (193)
Q Consensus 178 ~~gi~~~~~~i~~~l 192 (193)
|+|+++++++|.+.+
T Consensus 132 g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 132 PQSVQQLVDYLASLT 146 (158)
T ss_pred ccCHHHHHHHHHHhc
Confidence 999999999998754
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=159.08 Aligned_cols=155 Identities=23% Similarity=0.274 Sum_probs=107.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEeCCeEEEEEEcCChhh-------hHHhHHhhhccCCE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQM-------ARRVWKDYYAKVDA 90 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 90 (193)
..|+|+|.||||||||+|+|++.+.. ..+ +|..++...+.+.+..+.+||+||... ....+..+++.+++
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradv 239 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAV 239 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCE
Confidence 58999999999999999999976543 222 366788888888889999999999531 11122345678999
Q ss_pred EEEEEeCCCh----hhHHHHHHHHHHHHhCC----------CCCCCcEEEEeeCCCCCCCCCHHH-HHHhhCCCccccCC
Q 029453 91 VVYLIDAYDK----ERFSESKRELDALLSDE----------ALADVPFLILGNKIDIPYAASEDE-LRYHMGLTNFTTGK 155 (193)
Q Consensus 91 ii~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~pviiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~ 155 (193)
+++|+|+++. +.+.....+...+.... ...++|+++|+||+|++......+ +...+..
T Consensus 240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~------- 312 (500)
T PRK12296 240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEA------- 312 (500)
T ss_pred EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHH-------
Confidence 9999999752 23444443333332211 235789999999999964322221 2212110
Q ss_pred CcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 156 GNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++++++||+++.|+++++++|.+.+
T Consensus 313 ----------~g~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 313 ----------RGWPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred ----------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 125799999999999999999998754
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-22 Score=155.98 Aligned_cols=151 Identities=20% Similarity=0.293 Sum_probs=106.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEeC-CeEEEEEEcCChhh-------hHHhHHhhhccCCE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSIG-KIKFKAFDLGGHQM-------ARRVWKDYYAKVDA 90 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~~-~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 90 (193)
.|+++|.||||||||++++++.+.. ..+ +|..++...+.+. +..+.+||+||..+ ....+...++++++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 8999999999999999999987633 222 3666777777776 78899999999632 12223344677999
Q ss_pred EEEEEeCCCh---hhHHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 91 VVYLIDAYDK---ERFSESKRELDALLSDE-ALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 91 ii~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
+++|+|+++. +++.....+...+.... ...++|+++|+||+|+..... .+++.+.+.
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~------------------ 301 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG------------------ 301 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC------------------
Confidence 9999999854 45555555555554321 225799999999999842210 111222211
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++++||+++.|+++++++|.+.+
T Consensus 302 --~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 302 --PKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred --CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998754
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-22 Score=155.32 Aligned_cols=150 Identities=21% Similarity=0.214 Sum_probs=106.2
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHHh--------HH
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARRV--------WK 82 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~ 82 (193)
......++|+++|++|||||||+|++.+.... ...+ |.......+.+++..+.+|||||+...... ..
T Consensus 198 ~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 198 EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 34567899999999999999999999987532 3333 333345567788899999999997543221 23
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCC
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
.+++.+|++++|+|++++.+.... ++..+.. .+.|+++|+||+|+.+. ..+++.+.
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~~----------------- 333 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVSS----------------- 333 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhhh-----------------
Confidence 467889999999999988665543 4444421 47899999999999643 22111111
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++.+||++ .|++++++.|.+.+
T Consensus 334 ---~~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 334 ---KVLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred ---cCCceEEEEEec-CCHHHHHHHHHHHH
Confidence 113568999998 68999998887654
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=139.86 Aligned_cols=148 Identities=21% Similarity=0.202 Sum_probs=99.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCccccC-------------C----CCCcceeEEEeCCeEEEEEEcCChhhhHHhHH
Q 029453 22 KILFLGLDNSGKTTLLHMLKD--ERLVQHQ-------------P----TQYPTSEELSIGKIKFKAFDLGGHQMARRVWK 82 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~--~~~~~~~-------------~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (193)
+|+++|.+|+|||||++++.+ +.+.... . +.......+.+++..+.+|||||++.+...+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 799999999999999999986 4333221 1 22223345667788999999999999999889
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccccCCCccc
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFTTGKGNVN 159 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~ 159 (193)
.++..+|++++|+|+++.. ......++..... .++|+++|+||+|+...... +++...+.... ...
T Consensus 84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~---- 152 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELG--ATE---- 152 (194)
T ss_pred HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhC--Ccc----
Confidence 9999999999999998742 2222233333322 37899999999999643221 22222221100 000
Q ss_pred CCCCCCccEEEEEEeeecCCChhHH
Q 029453 160 LDNTNVRPLEVFMCSIVRKMGYGEG 184 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~~~gi~~~ 184 (193)
....++++++||++|.|+.++
T Consensus 153 ----~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 153 ----EQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred ----ccCccCEEEeehhcccccccc
Confidence 012358999999999877444
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-22 Score=159.13 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=106.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc--cCC--CCCcceeEEEeCCeEEEEEEcCChhhhHH-----------hHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ--HQP--TQYPTSEELSIGKIKFKAFDLGGHQMARR-----------VWKD 83 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~ 83 (193)
..++|+++|.+|+|||||+|++.+..... ..+ |.......+..++..+.+|||||+.+... ....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 45899999999999999999999876432 222 33334455666778999999999643211 1124
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-CCCCHHHHHHhhCCCccccCCCcccCCC
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP-YAASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
+++.+|++++|+|++++.+.+.. ..+..+. . .++|+++|+||+|+. +....+++...+....
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~-~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~------------ 313 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDL-RIAGLIL-E---AGKALVIVVNKWDLVKDEKTREEFKKELRRKL------------ 313 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHH-HHHHHHH-H---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhc------------
Confidence 57889999999999987544433 2233332 2 478999999999997 2222333333333221
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
......+++++||++|.|++++++++.+.
T Consensus 314 ~~~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 314 PFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred ccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 01133689999999999999999998764
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-22 Score=152.39 Aligned_cols=148 Identities=20% Similarity=0.236 Sum_probs=115.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccC--CCCCcceeEEEeCCeEEEEEEcCChhh---------hHHhHHhhhcc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV--QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQM---------ARRVWKDYYAK 87 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 87 (193)
..|+++|.||+|||||+|+|.+.+.. ... .|+++......+.+..+.++||+|.+. ........++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 67999999999999999999998866 222 388888899999999999999999552 12333456789
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|+++||+|...+ +...+..+..+++. .++|+++|+||+|... ..+...+.+++-+
T Consensus 84 ADvilfvVD~~~G--it~~D~~ia~~Lr~---~~kpviLvvNK~D~~~--~e~~~~efyslG~----------------- 139 (444)
T COG1160 84 ADVILFVVDGREG--ITPADEEIAKILRR---SKKPVILVVNKIDNLK--AEELAYEFYSLGF----------------- 139 (444)
T ss_pred CCEEEEEEeCCCC--CCHHHHHHHHHHHh---cCCCEEEEEEcccCch--hhhhHHHHHhcCC-----------------
Confidence 9999999999775 45666666666653 5799999999999752 2223344444443
Q ss_pred EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
-+++++||.+|.|+.++++++.+.+
T Consensus 140 g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 140 GEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred CCceEeehhhccCHHHHHHHHHhhc
Confidence 3679999999999999999998764
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=135.56 Aligned_cols=155 Identities=18% Similarity=0.203 Sum_probs=103.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhhh----------H-HhHHhh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMA----------R-RVWKDY 84 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~-~~~~~~ 84 (193)
.++|+++|.+|+|||||++++.+.... ...+ +.......+..++..+.+|||||+... . ......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 579999999999999999999887643 2222 222333456667788999999996432 1 011234
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
+..+|++++|+|++++.+.... ..+.... . .+.|+++++||+|+... ...+++.+...... .
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~-~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~---------- 145 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLIL-E---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKL-P---------- 145 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHHH-h---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhc-c----------
Confidence 5689999999999987554332 2222222 2 36899999999999754 23333333332221 0
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.....+++++||+++.|++++++++.+.
T Consensus 146 -~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 146 -FLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred -cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 0023579999999999999999998763
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-22 Score=143.09 Aligned_cols=159 Identities=19% Similarity=0.101 Sum_probs=99.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC----CCCcceeEEEe---------------------------------
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV--QHQP----TQYPTSEELSI--------------------------------- 61 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~----t~~~~~~~~~~--------------------------------- 61 (193)
++|+++|+.|+|||||+..+.+.... .... +.......+.+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47999999999999999999654211 1000 11000000000
Q ss_pred CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 029453 62 GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE 141 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~ 141 (193)
....+.+|||||++.+...+...+..+|++++|+|++++.........+..+. .. ...|+++|+||+|+.......+
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~-~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALE-IM--GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHH-Hc--CCCcEEEEEEchhccCHHHHHH
Confidence 12678999999999988887788889999999999987421112222222221 11 2357999999999964322222
Q ss_pred HHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+.+.... .. .....++++++||++|.|+++++++|.+.+
T Consensus 158 ~~~~i~~~~-~~---------~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 158 NYEQIKKFV-KG---------TIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHH-hc---------cccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 112211110 00 001235799999999999999999998765
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=152.84 Aligned_cols=151 Identities=17% Similarity=0.196 Sum_probs=103.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-c--CCCCCcceeEEEeCCe-EEEEEEcCChhh---------hHHhHHhhhcc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-H--QPTQYPTSEELSIGKI-KFKAFDLGGHQM---------ARRVWKDYYAK 87 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~~~~-~~~~~D~~g~~~---------~~~~~~~~~~~ 87 (193)
++|+++|.+|||||||+|++.+..... . ..|.++....+.+.+. .+.+|||+|..+ +... ...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~t-l~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKAT-LQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHH-HHHhhc
Confidence 689999999999999999999876431 2 2366666667776654 889999999732 2222 233578
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|++++|+|++++.+......+.. ++......++|+++|+||+|+...... ..... . . ..
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~-iL~el~~~~~pvIiV~NKiDL~~~~~~-~~~~~-~--~---------------~~ 336 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNT-VLEEIDAHEIPTLLVMNKIDMLDDFEP-RIDRD-E--E---------------NK 336 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHH-HHHHhccCCCCEEEEEEcccCCCchhH-HHHHH-h--c---------------CC
Confidence 999999999999866555433222 222222347899999999999642111 11100 0 0 00
Q ss_pred EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++.+||++|.|+++++++|.+.+
T Consensus 337 ~~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 337 PIRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHh
Confidence 1257899999999999999998764
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=155.66 Aligned_cols=147 Identities=20% Similarity=0.263 Sum_probs=106.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--cCC--CCCcceeEEEeCCeEEEEEEcCCh--------hhhHHhHHhhhccCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ--HQP--TQYPTSEELSIGKIKFKAFDLGGH--------QMARRVWKDYYAKVD 89 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~~~d 89 (193)
+|+++|.+|||||||+|++.+..... ..+ |.........+++..+.+|||||. +.+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 58999999999999999999877432 222 555666777888899999999995 344455566788999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++++|+|+.++. ......+..+++. .++|+++|+||+|+...... ..+.... ...+
T Consensus 81 ~vl~vvD~~~~~--~~~d~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~~l-----------------g~~~ 136 (429)
T TIGR03594 81 VILFVVDGREGL--TPEDEEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFYSL-----------------GFGE 136 (429)
T ss_pred EEEEEEeCCCCC--CHHHHHHHHHHHH---hCCCEEEEEECccCCccccc--HHHHHhc-----------------CCCC
Confidence 999999998753 2333334444433 47899999999998643221 1111111 1135
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++++++.+.+
T Consensus 137 ~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 137 PIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred eEEEeCCcCCChHHHHHHHHHhc
Confidence 79999999999999999998764
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-22 Score=152.80 Aligned_cols=157 Identities=19% Similarity=0.197 Sum_probs=108.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEeCC-eEEEEEEcCChhh-------hHHhHHhhhccCCE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSIGK-IKFKAFDLGGHQM-------ARRVWKDYYAKVDA 90 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 90 (193)
.|+|+|.||||||||+|++.+.+.. ..+ .|..+....+.+.. ..+.++||||..+ ....+...++.+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 7999999999999999999976643 222 36677777787765 5699999999643 12223345788999
Q ss_pred EEEEEeCC---ChhhHHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 91 VVYLIDAY---DKERFSESKRELDALLSD-EALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 91 ii~v~d~~---~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+++|+|++ +.+.+.....++..+... ....+.|+++|+||+|+.......+....+.... ..
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~--------------~~ 306 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEAL--------------GW 306 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHh--------------CC
Confidence 99999998 344455555565555432 1224689999999999864322222222221111 01
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||+++.|+++++++|.+.+
T Consensus 307 ~~~Vi~ISA~tg~GIdeLl~~I~~~L 332 (390)
T PRK12298 307 EGPVYLISAASGLGVKELCWDLMTFI 332 (390)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHh
Confidence 12589999999999999999998765
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=139.74 Aligned_cols=159 Identities=20% Similarity=0.241 Sum_probs=102.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccee--EEEeCCeEEEEEEcCCh----------hhhHHhHH
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSE--ELSIGKIKFKAFDLGGH----------QMARRVWK 82 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~~~~~~~~D~~g~----------~~~~~~~~ 82 (193)
.....++|+++|.+|||||||++++.+.++. ...++.+.+.. .... +..+.+|||||+ +.+.....
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 3447789999999999999999999987633 33333332221 1122 467999999994 33444444
Q ss_pred hhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCccc
Q 029453 83 DYYAK---VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVN 159 (193)
Q Consensus 83 ~~~~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (193)
.++.. .+++++|+|.+++.+. ....+..++.. .+.|+++++||+|+......+.....+.... ..
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~--~~~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l-~~------ 166 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKE--LDLQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKAL-KF------ 166 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCH--HHHHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHH-Hh------
Confidence 44543 4678889998775322 22222233322 4789999999999975433333222221111 00
Q ss_pred CCCCCCccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 160 LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
...+++++||+++.|+++++++|.+.++
T Consensus 167 ------~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 167 ------GDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred ------cCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 1247889999999999999999988764
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=155.31 Aligned_cols=146 Identities=21% Similarity=0.270 Sum_probs=103.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhh--------hHHhHHhhhccC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQM--------ARRVWKDYYAKV 88 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~ 88 (193)
++|+++|.+|||||||+|++.+.... ...+ |.........+++..+.+|||||+.. .......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999987743 2222 44556667778889999999999876 233344567889
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|++++|+|+.++.+ .....+..+++. .+.|+++|+||+|+... .....+...... .
T Consensus 82 d~il~vvd~~~~~~--~~~~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~lg~-----------------~ 137 (435)
T PRK00093 82 DVILFVVDGRAGLT--PADEEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYSLGL-----------------G 137 (435)
T ss_pred CEEEEEEECCCCCC--HHHHHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHhcCC-----------------C
Confidence 99999999987532 222233333333 37899999999997531 112222221111 2
Q ss_pred EEEEEeeecCCChhHHHHhhhh
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
+++++||++|.|+++++++|.+
T Consensus 138 ~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 138 EPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred CCEEEEeeCCCCHHHHHHHHHh
Confidence 4689999999999999999875
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=157.66 Aligned_cols=161 Identities=19% Similarity=0.188 Sum_probs=110.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccC-C--CCCcceeEEEeCCe-EEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-P--TQYPTSEELSIGKI-KFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~--t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
+..+.++|+++|++++|||||++++.+..+...+ + |.......+.+.+. .+.+||||||+.|..++......+|++
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 3457799999999999999999999887765432 2 33333344555444 899999999999999888888999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
++|+|++++..-+... .+... . ..++|+++++||+|+... ..+++...+....+. ...+....+++
T Consensus 163 ILVVda~dgv~~qT~e-~i~~~-~---~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~--------~~~~~~~~~~v 228 (587)
T TIGR00487 163 VLVVAADDGVMPQTIE-AISHA-K---AANVPIIVAINKIDKPEA-NPDRVKQELSEYGLV--------PEDWGGDTIFV 228 (587)
T ss_pred EEEEECCCCCCHhHHH-HHHHH-H---HcCCCEEEEEECcccccC-CHHHHHHHHHHhhhh--------HHhcCCCceEE
Confidence 9999998743212221 12221 1 147899999999999642 334443333211100 00111235799
Q ss_pred EEeeecCCChhHHHHhhhh
Q 029453 172 MCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~ 190 (193)
++||++|.|+++++++|..
T Consensus 229 ~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 229 PVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEECCCCCChHHHHHhhhh
Confidence 9999999999999999853
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-23 Score=136.25 Aligned_cols=153 Identities=20% Similarity=0.275 Sum_probs=116.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcc--eeEEEe-----------CCeEEEEEEcCChhhhHHhHHhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-PTQYPT--SEELSI-----------GKIKFKAFDLGGHQMARRVWKDY 84 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~--~~~~~~-----------~~~~~~~~D~~g~~~~~~~~~~~ 84 (193)
.-+|...+|.+|+||||++.++..+++...- .|.+.. .+.+-+ ....+.+|||.|+++|++...++
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 4457788999999999999999887765322 233222 111111 12578899999999999999999
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHH---HHHHhhCCCccccCCCccc
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASED---ELRYHMGLTNFTTGKGNVN 159 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~---~~~~~~~~~~~~~~~~~~~ 159 (193)
+..+=++++++|.++.++|.+...|+..+....--.+..+++++||+||.. ....+ ++.+.++++
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglP---------- 157 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLP---------- 157 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCC----------
Confidence 999999999999999999999999999885433224677999999999972 23332 255555555
Q ss_pred CCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 160 LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
++++||-+|.|+++..+.|...
T Consensus 158 ----------YfETSA~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 158 ----------YFETSACTGTNVEKAVELLLDL 179 (219)
T ss_pred ----------eeeeccccCcCHHHHHHHHHHH
Confidence 4899999999999999987654
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=145.85 Aligned_cols=119 Identities=18% Similarity=0.365 Sum_probs=98.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC---------------CeEEEEEEcCChhhhH
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG---------------KIKFKAFDLGGHQMAR 78 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~---------------~~~~~~~D~~g~~~~~ 78 (193)
....+||+++|..|||||||++++.++.+.. ..+|.+... ..+.++ ...+.+|||+|++.+.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 4477899999999999999999999988764 455665432 333332 3569999999999999
Q ss_pred HhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCC-----------CCCCcEEEEeeCCCCCC
Q 029453 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEA-----------LADVPFLILGNKIDIPY 135 (193)
Q Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~pviiv~nK~Dl~~ 135 (193)
.++..++++++++|+|+|+++.+++..+..|+..+..... ..++|+++|+||+||..
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 9999999999999999999999999999999998865421 13589999999999964
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=125.18 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=120.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCCc----ceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-TQYP----TSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-t~~~----~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
+..-+|..++|.-|+|||+|++++...++....| |.+. ....++..+..+.+|||.|+++|+.....+++.+.+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 4456799999999999999999999888876555 4332 2334445568899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++.++++..+..|+....+. ..++..+++++||.|+. ++.+-++....-.. ....
T Consensus 88 lmvyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~faee-----------------ngl~ 149 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFAEE-----------------NGLM 149 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHHhh-----------------cCeE
Confidence 9999999999999999999887543 33677788999999996 44444443322221 2257
Q ss_pred EEEEeeecCCChhHHHHhhh
Q 029453 170 VFMCSIVRKMGYGEGFKWLS 189 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~ 189 (193)
++++||++|.|+++.|-.-.
T Consensus 150 fle~saktg~nvedafle~a 169 (215)
T KOG0097|consen 150 FLEASAKTGQNVEDAFLETA 169 (215)
T ss_pred EEEecccccCcHHHHHHHHH
Confidence 89999999999999886543
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=138.24 Aligned_cols=145 Identities=21% Similarity=0.284 Sum_probs=93.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCcce--eEEEeCCeEEEEEEcCChh----------hhHHhHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERL-VQHQPTQYPTS--EELSIGKIKFKAFDLGGHQ----------MARRVWKD 83 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~----------~~~~~~~~ 83 (193)
..+.++|+++|.+|+|||||+|++.+..+ ..+.++.+.+. ..+..+ ..+.+|||||.. .+......
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 46889999999999999999999998763 23333333222 122223 368999999942 23333334
Q ss_pred hhc---cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHHhhCCCccccCCC
Q 029453 84 YYA---KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE----DELRYHMGLTNFTTGKG 156 (193)
Q Consensus 84 ~~~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~ 156 (193)
++. .++++++|+|++++-+... ..+...+.. .++|+++++||+|+...... +++++.+....
T Consensus 94 ~l~~~~~~~~ii~vvd~~~~~~~~~--~~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~------ 162 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRHPLKELD--LEMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA------ 162 (179)
T ss_pred HHHhChhhcEEEEEecCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc------
Confidence 444 4689999999987533222 222233332 47899999999999643222 22333333221
Q ss_pred cccCCCCCCccEEEEEEeeecCCChh
Q 029453 157 NVNLDNTNVRPLEVFMCSIVRKMGYG 182 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~~~gi~ 182 (193)
..++++++||++|+|++
T Consensus 163 ---------~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 ---------DDPSVQLFSSLKKTGID 179 (179)
T ss_pred ---------CCCceEEEECCCCCCCC
Confidence 23589999999999984
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=160.56 Aligned_cols=160 Identities=19% Similarity=0.174 Sum_probs=112.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccC-C--CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-P--TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
..+.+.|+++|++++|||||+++|.+..+.... . |.......+.+++..+.+||||||+.|..++......+|++++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 568899999999999999999999876654321 1 3333345566778899999999999999988888899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|++++..-+... .+... . ..++|+++++||+|+... ..+.+...+....+ ....+...++++++
T Consensus 367 VVdAddGv~~qT~e-~i~~a-~---~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~--------~~e~~g~~vp~vpv 432 (787)
T PRK05306 367 VVAADDGVMPQTIE-AINHA-K---AAGVPIIVAINKIDKPGA-NPDRVKQELSEYGL--------VPEEWGGDTIFVPV 432 (787)
T ss_pred EEECCCCCCHhHHH-HHHHH-H---hcCCcEEEEEECcccccc-CHHHHHHHHHHhcc--------cHHHhCCCceEEEE
Confidence 99998742111111 12222 1 247999999999999642 33333332221100 00111234689999
Q ss_pred eeecCCChhHHHHhhhh
Q 029453 174 SIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~ 190 (193)
||++|.|+++++++|..
T Consensus 433 SAktG~GI~eLle~I~~ 449 (787)
T PRK05306 433 SAKTGEGIDELLEAILL 449 (787)
T ss_pred eCCCCCCchHHHHhhhh
Confidence 99999999999999863
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-21 Score=155.85 Aligned_cols=149 Identities=21% Similarity=0.204 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc-------cccC-------CCCCcc----eeEEEe---C--CeEEEEEEcCChhhhH
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL-------VQHQ-------PTQYPT----SEELSI---G--KIKFKAFDLGGHQMAR 78 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~-------~~~~-------~t~~~~----~~~~~~---~--~~~~~~~D~~g~~~~~ 78 (193)
+++++|++++|||||++++....- .... .+.+.+ ...+.+ + ...+.+|||||+.++.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 799999999999999999976421 1110 112222 222333 2 2689999999999999
Q ss_pred HhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccccCC
Q 029453 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFTTGK 155 (193)
Q Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~ 155 (193)
..+..++..+|++++|+|++++.+.+....++... . .++|+++|+||+|+...... +++.+.++..
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~------ 153 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD------ 153 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC------
Confidence 88889999999999999999875555555444333 2 36899999999998643221 2233333221
Q ss_pred CcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 156 GNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|+++++++|.+.+
T Consensus 154 -----------~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 154 -----------ASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred -----------cceEEEeeccCCCCHHHHHHHHHHhC
Confidence 13589999999999999999998754
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-21 Score=139.08 Aligned_cols=171 Identities=26% Similarity=0.283 Sum_probs=116.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcceeEE-E-eC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTSEEL-S-IG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~~~-~-~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
..+||+++|++|||||||++++.++.+... .+|.+...... . .. ...+.+|||+|+++++..+..+...++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 448999999999999999999999998853 34444322221 1 11 5679999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH-HHHhhC-CCccccCCCcccCCCCCCccEEE
Q 029453 94 LIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDE-LRYHMG-LTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
|+|..+..+..+.. .|...+. .....+.|+++|+||+|+........ +...+. ...+........ .. ......+
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~-~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 160 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELR-ELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAV-LP-EVANPAL 160 (219)
T ss_pred EEecccchhhhHHHHHHHHHHH-HhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHh-hh-hhcccce
Confidence 99999855555544 5554543 33334699999999999985433222 222221 111111110000 00 0012238
Q ss_pred EEEeee--cCCChhHHHHhhhhhc
Q 029453 171 FMCSIV--RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~--~~~gi~~~~~~i~~~l 192 (193)
+.+|++ ++.++.+++..+...+
T Consensus 161 ~~~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 161 LETSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred eEeecccCCCcCHHHHHHHHHHHH
Confidence 999999 9999999999876543
|
|
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-22 Score=141.23 Aligned_cols=169 Identities=20% Similarity=0.319 Sum_probs=120.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce-eEEEe---CCeEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS-EELSI---GKIKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...+|++++|..++|||+|+-.+..+.+. .+.||...+. ..+.. ....+.+|||.|++++.+.++-.+.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35789999999999999999999988887 4566666443 33344 3467999999999999987777788999999
Q ss_pred EEEeCCChhhHHH-HHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 93 YLIDAYDKERFSE-SKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+++.+++++.+ ..+|+.++. .++ ++.|+++|++|.||+.+....+-....+.......... .+ ....+...++
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~-~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~-~l-A~~iga~~y~ 157 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIK-HHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGL-EL-AKEIGAVKYL 157 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHH-hhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHH-HH-HHHhCcceee
Confidence 9999999999998 456666664 333 78999999999999843212111111122221111000 00 1112347899
Q ss_pred EEeeecCCChhHHHHhhhh
Q 029453 172 MCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~ 190 (193)
+|||++..|++++|+.-..
T Consensus 158 EcSa~tq~~v~~vF~~a~~ 176 (198)
T KOG0393|consen 158 ECSALTQKGVKEVFDEAIR 176 (198)
T ss_pred eehhhhhCCcHHHHHHHHH
Confidence 9999999999999987543
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=128.00 Aligned_cols=158 Identities=20% Similarity=0.241 Sum_probs=122.7
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-----C--------CCCCcceeEEEeCC-eEEEEEEcCChhhhHHh
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-----Q--------PTQYPTSEELSIGK-IKFKAFDLGGHQMARRV 80 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-----~--------~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~ 80 (193)
.+.....||+++|+.++||||++++++....... . .|.......+.+.+ ..+++++||||++|..+
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFM 84 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHH
Confidence 3566888999999999999999999987764221 1 12223334444444 78999999999999999
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccC
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
|.-+.+.+.++|+++|.+.+..+ .....+.-+ ... ..+|++|.+||.|+....+++++.+.+....
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~-~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---------- 150 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFL-TSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL---------- 150 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHHHHHHHH-hhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc----------
Confidence 99999999999999999998776 333333333 331 2399999999999999989988888887664
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...+++..+|.++++..+.++.+...
T Consensus 151 -----~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 151 -----LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred -----CCCceeeeecccchhHHHHHHHHHhh
Confidence 23689999999999999999887654
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-21 Score=146.39 Aligned_cols=156 Identities=21% Similarity=0.248 Sum_probs=119.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCcceeEEEeCCeEEEEEEcCChhhhHH-----------hHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQH----QPTQYPTSEELSIGKIKFKAFDLGGHQMARR-----------VWKD 83 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~ 83 (193)
..+||+++|.||+|||||+|++.+.+-.-. ..|.+.....+++++..+.++||.|..+-.. -...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 469999999999999999999999886532 2377777888899999999999999432111 1123
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCC
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
.+..++++++|+|++.+ +.+....+..+... .+.++++|+||+|+... ...++++..+....
T Consensus 257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l----------- 320 (444)
T COG1160 257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKL----------- 320 (444)
T ss_pred HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHh-----------
Confidence 56789999999999988 55666666666554 58999999999999754 45555555554422
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.+....+++.+||++|.|++++|+.+...
T Consensus 321 -~~l~~a~i~~iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 321 -PFLDFAPIVFISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred -ccccCCeEEEEEecCCCChHHHHHHHHHH
Confidence 12355799999999999999999998653
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-21 Score=131.70 Aligned_cols=151 Identities=25% Similarity=0.249 Sum_probs=102.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeC-CeEEEEEEcCChhhhH-------HhHHhhhccCCEEE
Q 029453 25 FLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIG-KIKFKAFDLGGHQMAR-------RVWKDYYAKVDAVV 92 (193)
Q Consensus 25 i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~ii 92 (193)
++|++|||||||++++.+........ +........... ...+.+||+||+.... .....++..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999998775442211 223333334443 6789999999976543 23345678899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+|++++....... +..... ..+.|+++|+||+|+.......+......... ......++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 143 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLIL------------LLLLGLPVIA 143 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhc------------ccccCCceEE
Confidence 999999876554443 222222 25899999999999986544444322111111 0124578999
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||+++.|+++++++|.+.+
T Consensus 144 ~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 144 VSALTGEGIDELREALIEAL 163 (163)
T ss_pred EeeeccCCHHHHHHHHHhhC
Confidence 99999999999999998753
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-21 Score=156.16 Aligned_cols=167 Identities=19% Similarity=0.206 Sum_probs=103.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcceeEEEe------------------CCeEEEEEEcCChhhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQP---TQYPTSEELSI------------------GKIKFKAFDLGGHQMA 77 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~~~~~~------------------~~~~~~~~D~~g~~~~ 77 (193)
+.+-|+++|++++|||||++++.+..+....+ |.......+.. ....+.+||||||+.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 56789999999999999999999876653322 11111111111 1123889999999999
Q ss_pred HHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH--------------HHHH
Q 029453 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE--------------DELR 143 (193)
Q Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~--------------~~~~ 143 (193)
..++..++..+|++++|+|+++....+... .+ .++.. .+.|+++++||+|+.+.... ++..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e-~i-~~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQE-AL-NILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHH-HH-HHHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 998888899999999999998742212111 11 12222 37899999999999632110 0010
Q ss_pred HhhCCC-------ccccCCCccc--CCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 144 YHMGLT-------NFTTGKGNVN--LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 144 ~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
..+... ..+.+...+. ....+....+++++||++|+|+++++++|..
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 000000 0000000000 0012334679999999999999999999854
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=155.12 Aligned_cols=161 Identities=19% Similarity=0.216 Sum_probs=110.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccC-C--CCCcceeEEEe----CCeEEEEEEcCChhhhHHhHHhhhccC
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-P--TQYPTSEELSI----GKIKFKAFDLGGHQMARRVWKDYYAKV 88 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~--t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (193)
+..+..+|+++|++++|||||++++....+.... + |.......+.+ .+..+.+||||||+.|..++..++..+
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~a 319 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVT 319 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHC
Confidence 3557889999999999999999999877655321 1 22222222222 358899999999999999998899999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|++++|+|++++...+... .+..+ . ..++|+++++||+|+... ..+++...+..... +...+...+
T Consensus 320 DiaILVVDA~dGv~~QT~E-~I~~~-k---~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~l--------l~e~~g~~v 385 (742)
T CHL00189 320 DIAILIIAADDGVKPQTIE-AINYI-Q---AANVPIIVAINKIDKANA-NTERIKQQLAKYNL--------IPEKWGGDT 385 (742)
T ss_pred CEEEEEEECcCCCChhhHH-HHHHH-H---hcCceEEEEEECCCcccc-CHHHHHHHHHHhcc--------chHhhCCCc
Confidence 9999999998753222221 12222 1 247899999999999743 23333333321100 000011346
Q ss_pred EEEEEeeecCCChhHHHHhhhh
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
+++++||++|.|+++++++|..
T Consensus 386 pvv~VSAktG~GIdeLle~I~~ 407 (742)
T CHL00189 386 PMIPISASQGTNIDKLLETILL 407 (742)
T ss_pred eEEEEECCCCCCHHHHHHhhhh
Confidence 8999999999999999999865
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=157.18 Aligned_cols=156 Identities=16% Similarity=0.122 Sum_probs=109.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhh----------hHHh-HHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQM----------ARRV-WKD 83 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~-~~~ 83 (193)
..++|+++|.+|||||||+|++.+.... ...+ |.......+.+++..+.+|||||..+ +... ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 4589999999999999999999988743 2222 44455556777888899999999531 2111 123
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+++.+|++++|+|++++.+.+... .+..+.. .++|+++|+||+|+.+....+.+...+.... .
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l-~----------- 591 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEF-D----------- 591 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhc-c-----------
Confidence 468899999999999876655443 3333332 4789999999999975433333433333221 0
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.....+++++||++|.|++++++.+.+.
T Consensus 592 ~~~~~~ii~iSAktg~gv~~L~~~i~~~ 619 (712)
T PRK09518 592 RVTWARRVNLSAKTGWHTNRLAPAMQEA 619 (712)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 0123577999999999999999998764
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.7e-21 Score=157.92 Aligned_cols=150 Identities=21% Similarity=0.229 Sum_probs=104.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccC--C--CCCcceeEEEeCCeEEEEEEcCChhh--------hHHhHHhhhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQ--P--TQYPTSEELSIGKIKFKAFDLGGHQM--------ARRVWKDYYA 86 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 86 (193)
...+|+++|.+|||||||+|++.+....... + |.........+++..+.+|||||.+. +......+++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 3468999999999999999999987654322 2 22333344556778999999999652 3344455678
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
.+|++++|+|+++. +......+...++. .++|+++|+||+|+.... ....+.+....
T Consensus 354 ~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~lg~---------------- 410 (712)
T PRK09518 354 LADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKLGL---------------- 410 (712)
T ss_pred hCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHcCC----------------
Confidence 99999999999864 23333334444433 589999999999985321 12222221111
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++||++|.|+++++++|.+.+
T Consensus 411 -~~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 411 -GEPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred -CCeEEEECCCCCCchHHHHHHHHhc
Confidence 1347899999999999999998754
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-21 Score=151.41 Aligned_cols=155 Identities=18% Similarity=0.198 Sum_probs=105.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcccc--CC--CCCcceeEEEeCCeEEEEEEcCChhhh----------HH-hHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQH--QP--TQYPTSEELSIGKIKFKAFDLGGHQMA----------RR-VWKD 83 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~-~~~~ 83 (193)
..++|+++|.+|+|||||+|++.+...... .+ |.......+...+..+.+|||||+.+. .. ....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 569999999999999999999997764322 22 222233445567888999999995321 11 1123
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+++.+|++++|+|++++.+.+.. .+...... .++|+++++||+|+......+++...+.... .
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l-~----------- 314 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDL--RIAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRL-P----------- 314 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhc-c-----------
Confidence 57789999999999987544332 22222222 4789999999999974333334433333221 0
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
.....+++++||++|.|++++++.+.+
T Consensus 315 ~~~~~~i~~~SA~~~~gv~~l~~~i~~ 341 (435)
T PRK00093 315 FLDYAPIVFISALTGQGVDKLLEAIDE 341 (435)
T ss_pred cccCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 113368999999999999999999865
|
|
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-22 Score=130.14 Aligned_cols=147 Identities=24% Similarity=0.324 Sum_probs=114.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCcccc--CCCCCcce--eEEE--eCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC
Q 029453 25 FLGLDNSGKTTLLHMLKDERLVQH--QPTQYPTS--EELS--IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 25 i~G~~~~GKssl~~~l~~~~~~~~--~~t~~~~~--~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
++|.+++|||+|+-++..+.+... -.|.+... ..+. ..+..+.+|||.||++|++..+.|++.+|++++++|+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 689999999999988876665432 12333322 2222 23478999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-----CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 99 DKERFSESKRELDALLSDEALADVPFLILGNKIDIPY-----AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+..+|++...|+.++-. +......+++++||+|+.+ ...-+.+.+.+++++ .++
T Consensus 82 nkasfdn~~~wlsei~e-y~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipf--------------------met 140 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHE-YAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPF--------------------MET 140 (192)
T ss_pred cchhHHHHHHHHHHHHH-HHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCc--------------------eec
Confidence 99999999999998854 4445688999999999952 222233666666655 789
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++-.|-.|.+.+
T Consensus 141 saktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 141 SAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred cccccccHhHHHHHHHHHH
Confidence 9999999999999887654
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-21 Score=155.71 Aligned_cols=157 Identities=20% Similarity=0.123 Sum_probs=104.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc----cCC--CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ----HQP--TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~----~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+.|+++|++++|||||++++.+..... ..+ |.......+..++..+.+||+|||+.+...+..++.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 468999999999999999998643221 111 22333445667778999999999999988888888999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+|++++...+. ...+ .++.. .++| +++|+||+|+......+.............. .....+++++
T Consensus 81 VDa~~G~~~qT-~ehl-~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~---------~~~~~~ii~v 146 (581)
T TIGR00475 81 VDADEGVMTQT-GEHL-AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI---------FLKNAKIFKT 146 (581)
T ss_pred EECCCCCcHHH-HHHH-HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC---------CCCCCcEEEE
Confidence 99988421111 1111 22222 3667 9999999999743322222211111100000 0013689999
Q ss_pred eeecCCChhHHHHhhhhh
Q 029453 174 SIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~ 191 (193)
||++|.|+++++++|.+.
T Consensus 147 SA~tG~GI~eL~~~L~~l 164 (581)
T TIGR00475 147 SAKTGQGIGELKKELKNL 164 (581)
T ss_pred eCCCCCCchhHHHHHHHH
Confidence 999999999999998664
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=128.25 Aligned_cols=109 Identities=25% Similarity=0.342 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCccee--EEE--eCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ---HQPTQYPTSE--ELS--IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~--~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
||+++|++|||||||++++.+..... ..++...... ... .....+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999888761 1112222211 222 2334689999999998877666668899999999
Q ss_pred EeCCChhhHHHHHH---HHHHHHhCCCCCCCcEEEEeeCCC
Q 029453 95 IDAYDKERFSESKR---ELDALLSDEALADVPFLILGNKID 132 (193)
Q Consensus 95 ~d~~~~~~~~~~~~---~~~~~~~~~~~~~~pviiv~nK~D 132 (193)
+|+++++++..+.. |+..+... ..+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 99999998888644 45555321 24699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-20 Score=150.19 Aligned_cols=150 Identities=20% Similarity=0.227 Sum_probs=105.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC--ccc---------c---CC----CCCcceeEEEeC-----CeEEEEEEcCChhhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER--LVQ---------H---QP----TQYPTSEELSIG-----KIKFKAFDLGGHQMA 77 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~--~~~---------~---~~----t~~~~~~~~~~~-----~~~~~~~D~~g~~~~ 77 (193)
-+++++|+.++|||||++++.... ... . +. |.......+.+. +..+.+||||||.++
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 389999999999999999997532 110 0 11 222223334332 578999999999999
Q ss_pred HHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccccC
Q 029453 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFTTG 154 (193)
Q Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~ 154 (193)
...+..++..+|++++|+|++++...+....+.... . .++|+++|+||+|+...... +++.+.++..
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~--~---~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~----- 157 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL--E---NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID----- 157 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH--H---CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC-----
Confidence 988888999999999999999864444443333322 1 47899999999998643221 2233332221
Q ss_pred CCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 155 KGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|+++++++|.+.+
T Consensus 158 ------------~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 158 ------------ASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred ------------cceEEEEecCCCCCHHHHHHHHHHhC
Confidence 13689999999999999999998754
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-20 Score=133.41 Aligned_cols=149 Identities=20% Similarity=0.119 Sum_probs=94.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-c---------------------------------cCCCCCcceeEEEeCCeEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV-Q---------------------------------HQPTQYPTSEELSIGKIKFK 67 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~-~---------------------------------~~~t~~~~~~~~~~~~~~~~ 67 (193)
||+++|++|+|||||++++....-. . ...|.......+.+++..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999998643211 0 01133344455667788999
Q ss_pred EEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH--HHHHHh
Q 029453 68 AFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE--DELRYH 145 (193)
Q Consensus 68 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~--~~~~~~ 145 (193)
+|||||++++.......+..+|++++|+|++++. .........++... ...++++|+||+|+.+.... .+....
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~--~~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGV--LEQTRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc--cHhHHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 9999999988766667788999999999998753 22222222222221 12457889999998642211 112222
Q ss_pred hCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHH
Q 029453 146 MGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184 (193)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 184 (193)
+.... .. ......+++++||++|.|+.+.
T Consensus 157 ~~~~~-~~---------~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 157 YLAFA-AK---------LGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHH-HH---------cCCCCceEEEEeCCCCCCCccC
Confidence 21110 00 0002257899999999999753
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-20 Score=128.86 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=96.8
Q ss_pred cCCCCCccee--EEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc
Q 029453 48 HQPTQYPTSE--ELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP 123 (193)
Q Consensus 48 ~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 123 (193)
+.+|.+.... .+.++ ...+.+|||||++++...+..+++.+|++|+|+|++++++++....|+..+.... ..+.|
T Consensus 9 ~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~p 87 (176)
T PTZ00099 9 YQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVI 87 (176)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCe
Confidence 4556665442 23433 4788999999999999999999999999999999999999999999988887543 25789
Q ss_pred EEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 124 FLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 124 viiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++|+||+|+.. ....++....... ..+.++++||++|.|++++|++|.+.+
T Consensus 88 iilVgNK~DL~~~~~v~~~e~~~~~~~-----------------~~~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 88 IALVGNKTDLGDLRKVTYEEGMQKAQE-----------------YNTMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred EEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999999963 2333332221110 124679999999999999999998754
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-20 Score=127.27 Aligned_cols=175 Identities=21% Similarity=0.296 Sum_probs=125.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhc---cCCEEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYA---KVDAVVY 93 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~d~ii~ 93 (193)
.++.-.|.++|+.+||||+|+-++..+....+.+...++......++...+++|.|||.+.+.....+++ .+-+++|
T Consensus 35 rs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 35 RSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred hccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 3344789999999999999999999998777778888999999999888999999999999888888877 7999999
Q ss_pred EEeCCC--hhhHHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHHH----HHhhCCCcccc-------------
Q 029453 94 LIDAYD--KERFSESKRELDALLSDE-ALADVPFLILGNKIDIPYAASEDEL----RYHMGLTNFTT------------- 153 (193)
Q Consensus 94 v~d~~~--~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~Dl~~~~~~~~~----~~~~~~~~~~~------------- 153 (193)
|+|+.. ++--......+.-+.... ....+|+++++||.|+..+.+.+-+ +.++......+
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~ 194 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK 194 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 999974 221223334444444333 4567999999999999855555443 33332111111
Q ss_pred ----CCCccc--CCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 154 ----GKGNVN--LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 154 ----~~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...... .+.-....+.+.++|++++ +++++-+||.+++
T Consensus 195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 000111 0111124567899999999 8999999998764
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=125.96 Aligned_cols=154 Identities=20% Similarity=0.309 Sum_probs=109.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCcce--eEEEeCCeEEEEEEcCC----------hhhhHHhHHhhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERL-VQHQPTQYPTS--EELSIGKIKFKAFDLGG----------HQMARRVWKDYY 85 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~D~~g----------~~~~~~~~~~~~ 85 (193)
..+-|+++|.+|+|||||+|.+++.+. ..++.|.+.+. ..+.+++ .+.++|.|| .+.+..+...|+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL 101 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYL 101 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-cEEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence 566899999999999999999999773 45555555544 4444444 388999999 334555555666
Q ss_pred c---cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHHhhCCCccccCCCcc
Q 029453 86 A---KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE----DELRYHMGLTNFTTGKGNV 158 (193)
Q Consensus 86 ~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~ 158 (193)
+ +..++++++|+..+ ....+..+-.++.. .++|+++++||+|+.+.... ....+.+....
T Consensus 102 ~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~-------- 168 (200)
T COG0218 102 EKRANLKGVVLLIDARHP--PKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP-------- 168 (200)
T ss_pred hhchhheEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC--------
Confidence 5 36789999999876 34555555555555 58999999999999854333 23444444443
Q ss_pred cCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 159 NLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....++..|+.++.|++++...|.+.+
T Consensus 169 ------~~~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 169 ------PDDQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred ------CccceEEEEecccccCHHHHHHHHHHHh
Confidence 0112289999999999999999988765
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-20 Score=154.56 Aligned_cols=150 Identities=21% Similarity=0.154 Sum_probs=103.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHH----------hHHhhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARR----------VWKDYY 85 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~ 85 (193)
+.++|+++|++|||||||+|++.+.... ...+ |.+.....+.+++.++.+|||||+..+.. ....++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 4679999999999999999999876543 2222 44555666778888999999999765421 112222
Q ss_pred --ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 86 --AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 86 --~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+.+|++++|+|+++.++.. .+...+.+ .++|+++++||+|+.+........+.+...
T Consensus 82 ~~~~aD~vI~VvDat~ler~l---~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~-------------- 140 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNL---YLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSAR-------------- 140 (772)
T ss_pred hccCCCEEEEEecCCcchhhH---HHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHH--------------
Confidence 4799999999999865322 23333332 379999999999986332221111222111
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
..++++++||++|+|++++++.+.+.
T Consensus 141 --LG~pVvpiSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 141 --LGCPVIPLVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred --hCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 12468999999999999999998654
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.8e-20 Score=133.08 Aligned_cols=149 Identities=23% Similarity=0.252 Sum_probs=102.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-cc--CCCCCcceeEEEeCCeEEEEEEcCChhhhH-------HhHHhhhccCCEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV-QH--QPTQYPTSEELSIGKIKFKAFDLGGHQMAR-------RVWKDYYAKVDAV 91 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~i 91 (193)
+|+++|++|||||||++++.+.... .. .+|..+....+.+++..+.+||+||+.+.. ......++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 7899999999999999999987632 22 225556677788889999999999974321 2334567899999
Q ss_pred EEEEeCCChhh-HHHHHHHH----------------------------------------HHHHhCC-------------
Q 029453 92 VYLIDAYDKER-FSESKREL----------------------------------------DALLSDE------------- 117 (193)
Q Consensus 92 i~v~d~~~~~~-~~~~~~~~----------------------------------------~~~~~~~------------- 117 (193)
++|+|+++++. .......+ ..+++.+
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999987542 22121111 1111111
Q ss_pred -----------CCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHH
Q 029453 118 -----------ALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFK 186 (193)
Q Consensus 118 -----------~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 186 (193)
+...+|+++|+||+|+... ++... +. ...+++++||++|.|++++++
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~~-~~------------------~~~~~~~~SA~~g~gi~~l~~ 219 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISI---EELDL-LA------------------RQPNSVVISAEKGLNLDELKE 219 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCH---HHHHH-Hh------------------cCCCEEEEcCCCCCCHHHHHH
Confidence 1123699999999998532 23221 10 112578999999999999999
Q ss_pred hhhhhc
Q 029453 187 WLSQYI 192 (193)
Q Consensus 187 ~i~~~l 192 (193)
.|.+.+
T Consensus 220 ~i~~~L 225 (233)
T cd01896 220 RIWDKL 225 (233)
T ss_pred HHHHHh
Confidence 998765
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=140.13 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=110.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCcceeEEEeCCeEEEEEEcCChhhh---------HHhHH
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH----QPTQYPTSEELSIGKIKFKAFDLGGHQMA---------RRVWK 82 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~ 82 (193)
.....++++++|.||+|||||+|.+.+....-+ .+|++.-...+..++.+++++||.|..+- .+. .
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs-~ 291 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERA-K 291 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHH-H
Confidence 455889999999999999999999998886532 33777788999999999999999995422 222 2
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCC
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
..++++|.+++|+|++.+.+ ......+. . ...++|+++|.||.|+......... ...
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~-~~d~~~~~-~----~~~~~~~i~v~NK~DL~~~~~~~~~--~~~--------------- 348 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLD-KEDLALIE-L----LPKKKPIIVVLNKADLVSKIELESE--KLA--------------- 348 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCc-hhhHHHHH-h----cccCCCEEEEEechhcccccccchh--hcc---------------
Confidence 34678999999999998521 11222222 2 1257999999999999854442222 111
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....++.+|+++|+|++.+.+.|.+.+
T Consensus 349 ---~~~~~i~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 349 ---NGDAIISISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred ---CCCceEEEEecCccCHHHHHHHHHHHH
Confidence 123689999999999999999987653
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=128.24 Aligned_cols=149 Identities=17% Similarity=0.129 Sum_probs=94.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc-------c-----cc-------CCCCCcceeEEEeCCeEEEEEEcCChhhhHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERL-------V-----QH-------QPTQYPTSEELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~-------~-----~~-------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
.++|+++|.+++|||||++++.+... . .. ..|.......+..++..+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 57899999999999999999975310 0 00 00222223344456788999999999988877
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcc
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNV 158 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~ 158 (193)
....+..+|++++|+|+..+- ......+..++.. .++| +++++||+|+..... .++..++.....-....
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~--~~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~--- 153 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGP--MPQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGF--- 153 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcc---
Confidence 777888999999999998752 2323222333333 3566 789999999863221 11122222111100000
Q ss_pred cCCCCCCccEEEEEEeeecCCCh
Q 029453 159 NLDNTNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~~~gi 181 (193)
.....+++++||++|.|+
T Consensus 154 -----~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 154 -----DGDNTPIVRGSALKALEG 171 (195)
T ss_pred -----cccCCeEEEeeCccccCC
Confidence 013478999999999985
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-20 Score=145.30 Aligned_cols=154 Identities=17% Similarity=0.118 Sum_probs=100.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc----------------------------------ccCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV----------------------------------QHQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 62 (193)
.++.++|+++|++++|||||+++|....-. ....|.......+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 357789999999999999999999732211 0111444455566777
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--H-
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS--E- 139 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~- 139 (193)
+..+.+||||||+.+.......+..+|++++|+|++++..+.....+...+.... ...|+++++||+|+..... .
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999998887655566788999999999987312223222333333222 2246999999999964211 1
Q ss_pred ---HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHH
Q 029453 140 ---DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184 (193)
Q Consensus 140 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 184 (193)
+++...+....+ ....++++++||++|.|+++.
T Consensus 161 ~~~~~i~~~l~~~g~------------~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 161 EVKEEVSKLLKMVGY------------KPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHHhhCC------------CcCcceEEEeecccCCCcccc
Confidence 122222211110 002368999999999999873
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=130.90 Aligned_cols=164 Identities=19% Similarity=0.182 Sum_probs=103.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCC-------------CCCc----------------------------ceeEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQP-------------TQYP----------------------------TSEELS 60 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~-------------t~~~----------------------------~~~~~~ 60 (193)
||+++|+.++|||||++++..+.+..... ..+. ....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999998654432100 0000 012334
Q ss_pred eCCeEEEEEEcCChhhhHHhHHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC
Q 029453 61 IGKIKFKAFDLGGHQMARRVWKDYYA--KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS 138 (193)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~ 138 (193)
..+..+.++||||++++.......+. .+|++++|+|+.++. ......+..++.. .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~--~~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI--IGMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 45678999999999988766555554 689999999998753 3333333333333 4689999999999864333
Q ss_pred HHH----HHHhhCCCcccc----CCCcccC-----CCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 139 EDE----LRYHMGLTNFTT----GKGNVNL-----DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 139 ~~~----~~~~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
..+ +.+.+...-... ....+++ ........+++.+||.+|+|++++..+|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 322 333333211110 0000000 111224569999999999999999998864
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.9e-20 Score=143.64 Aligned_cols=161 Identities=19% Similarity=0.105 Sum_probs=101.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC------CCCcc-------------------ee-EEEe------CCeE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP------TQYPT-------------------SE-ELSI------GKIK 65 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~------t~~~~-------------------~~-~~~~------~~~~ 65 (193)
+++++|+++|.+++|||||++.+.+........ |.... .. .... .+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 567899999999999999999997532211100 00000 00 0001 1467
Q ss_pred EEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHh
Q 029453 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYH 145 (193)
Q Consensus 66 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~ 145 (193)
+.+||+|||+++...+......+|++++|+|++++.........+. ++... ...|+++++||+|+.......+..+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-ALEII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-HHHHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 9999999999998888888888999999999987421111122222 22221 23579999999999743222121122
Q ss_pred hCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 146 MGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+.... . ......++++++||++|.|+++++++|...
T Consensus 159 i~~~l-~---------~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 159 IKEFV-K---------GTVAENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred HHhhh-h---------hcccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 11110 0 001134689999999999999999999864
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-20 Score=122.27 Aligned_cols=137 Identities=23% Similarity=0.286 Sum_probs=93.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCCh----hhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGH----QMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~----~~~~~~~~~~~~~~d~ii~v~d 96 (193)
.||.++|+.|||||||+++|.+.+.. ...+..+.+.+ .++||||. ..+.......-.++|++++|.|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~------~~KTq~i~~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR------YKKTQAIEYYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC------cCccceeEecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 48999999999999999999885531 12233344433 35899993 3334433444568999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP-YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
++++.+ ...-.+... -+.|+|=|+||+|+. .....+..++.+...- .-++|++|+
T Consensus 73 at~~~~--~~pP~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG----------------~~~if~vS~ 128 (143)
T PF10662_consen 73 ATEPRS--VFPPGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAG----------------VKEIFEVSA 128 (143)
T ss_pred CCCCCc--cCCchhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcC----------------CCCeEEEEC
Confidence 998632 222222233 268999999999998 3344444444443332 125699999
Q ss_pred ecCCChhHHHHhhhh
Q 029453 176 VRKMGYGEGFKWLSQ 190 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~ 190 (193)
.+|+|++++.++|.+
T Consensus 129 ~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 129 VTGEGIEELKDYLEE 143 (143)
T ss_pred CCCcCHHHHHHHHhC
Confidence 999999999999863
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-20 Score=150.54 Aligned_cols=142 Identities=22% Similarity=0.178 Sum_probs=96.2
Q ss_pred cCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHHh------HHhhh--ccCCEEEEEE
Q 029453 27 GLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARRV------WKDYY--AKVDAVVYLI 95 (193)
Q Consensus 27 G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~d~ii~v~ 95 (193)
|++|||||||+|++.+.... .+.+ |.......+.+++..+.+|||||+.++... ...++ +.+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999987653 3333 333444566778888999999998765332 23333 3689999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|+++.+. ...+...+.+ .+.|+++|+||+|+.+........+.+.... ..+++++||
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l----------------g~pvv~tSA 137 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERL----------------GVPVVPTSA 137 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc----------------CCCEEEEEC
Confidence 9987542 2233333322 4799999999999863221111111111111 146899999
Q ss_pred ecCCChhHHHHhhhhh
Q 029453 176 VRKMGYGEGFKWLSQY 191 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~ 191 (193)
++|+|++++++++.+.
T Consensus 138 ~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 138 TEGRGIERLKDAIRKA 153 (591)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999999764
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-19 Score=129.46 Aligned_cols=151 Identities=17% Similarity=0.086 Sum_probs=95.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc---------------------------ccc-------CCCCCcceeEEEeCCeEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL---------------------------VQH-------QPTQYPTSEELSIGKIKFK 67 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~---------------------------~~~-------~~t~~~~~~~~~~~~~~~~ 67 (193)
+|+++|++++|||||+.++....- ... ..|.......+.+++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999852110 000 1133444566778889999
Q ss_pred EEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhh-----HH-HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CC--
Q 029453 68 AFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKER-----FS-ESKRELDALLSDEALADVPFLILGNKIDIPYA-AS-- 138 (193)
Q Consensus 68 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-----~~-~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~-- 138 (193)
+|||||+..+...+...++.+|++++|+|++++.. .. .....+. +.... ..+|+++++||+|+... ..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHc--CCCeEEEEEEccccccccccHH
Confidence 99999998887777777888999999999987421 11 1112222 22221 23689999999999732 12
Q ss_pred -HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 139 -EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
.+++...+.... ... ......++++++||++|.|+++
T Consensus 158 ~~~~i~~~l~~~l-~~~-------~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 158 RYDEIKKELSPFL-KKV-------GYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHH-HHc-------CCCcCCceEEEeecCcCCCCCc
Confidence 122232222111 000 0001347899999999999873
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-19 Score=140.92 Aligned_cols=166 Identities=20% Similarity=0.133 Sum_probs=102.3
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc--C----CCCCcceeE--------------E--E--e---C----
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH--Q----PTQYPTSEE--------------L--S--I---G---- 62 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~----~t~~~~~~~--------------~--~--~---~---- 62 (193)
+...+++++|+++|+.++|||||+..+.+...... + .|....... + . . +
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE 82 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence 34567889999999999999999999965321111 0 011110000 0 0 0 0
Q ss_pred -CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 029453 63 -KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE 141 (193)
Q Consensus 63 -~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~ 141 (193)
...+.+|||||++++...+......+|++++|+|++++.........+..+ ... ...|+++|+||+|+.......+
T Consensus 83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~ 159 (411)
T PRK04000 83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALE 159 (411)
T ss_pred cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHH
Confidence 257899999999998777666677889999999999652111111122222 221 2347899999999975322211
Q ss_pred HHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+.+.... .. ......+++++||++|.|+++++++|.+.+
T Consensus 160 ~~~~i~~~l-~~---------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 160 NYEQIKEFV-KG---------TVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHh-cc---------ccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 111111100 00 001236899999999999999999998753
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-19 Score=142.49 Aligned_cols=145 Identities=25% Similarity=0.281 Sum_probs=110.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhh------HHhHHhhh--cc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMA------RRVWKDYY--AK 87 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~--~~ 87 (193)
+..+|+++|+||+||||++|++.+.... .+.| |.+.....+.+.+.+++++|+||--.. +.....++ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 5678999999999999999999988755 5555 777888899999999999999992211 12222332 46
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY----AASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+|+++.|+|++|.++--.+.-++.++ +.|+++++|++|..+ ..+.+.+.+.++.
T Consensus 82 ~D~ivnVvDAtnLeRnLyltlQLlE~-------g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv--------------- 139 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLTLQLLEL-------GIPMILALNMIDEAKKRGIRIDIEKLSKLLGV--------------- 139 (653)
T ss_pred CCEEEEEcccchHHHHHHHHHHHHHc-------CCCeEEEeccHhhHHhcCCcccHHHHHHHhCC---------------
Confidence 89999999999986544444444444 889999999999862 3344456555544
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
+++++||++|.|++++++.+.+
T Consensus 140 -----PVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 140 -----PVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred -----CEEEEEeecCCCHHHHHHHHHH
Confidence 5699999999999999998865
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-20 Score=144.19 Aligned_cols=157 Identities=15% Similarity=0.056 Sum_probs=99.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCC--ccc--------------------------------cCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDER--LVQ--------------------------------HQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~--~~~--------------------------------~~~t~~~~~~~~~~~ 62 (193)
.+..++|+++|+.++|||||+++|.... ... ...|.......+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 4577899999999999999999997421 110 001222334455667
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHH-HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--H
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFS-ESKRELDALLSDEALADVPFLILGNKIDIPYAAS--E 139 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~ 139 (193)
+..+.+||||||+++.......+..+|++++|+|++++++.. ........+.... ...|+++++||+|+..... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 889999999999988776666778999999999999874321 1111122222221 2357999999999963211 1
Q ss_pred HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 140 DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
++...++.... ... ......++++++||++|.|+++
T Consensus 162 ~~~~~ei~~~~-~~~-------g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 162 EAIKKEVSNLI-KKV-------GYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHH-HHc-------CCCcccceEEEeeccccccccc
Confidence 11111111100 000 0001346899999999999986
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-19 Score=128.93 Aligned_cols=166 Identities=18% Similarity=0.194 Sum_probs=110.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--------------cc---CC----CCCcceeEEEeCCeEEEEEEcCChhhhHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV--------------QH---QP----TQYPTSEELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~--------------~~---~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
+|+++|++|+|||||++++....-. .. +. +.......+.+++..+.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999653211 00 00 122234566778899999999999998888
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC---CHHHHHHhhCCCccccCCCc
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA---SEDELRYHMGLTNFTTGKGN 157 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~ 157 (193)
...+++.+|++++|+|+++.... ....++..+ .. .++|+++++||+|+.+.. ..+++...++.....-+...
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~-~~---~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLL-RK---LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHH-HH---cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 88889999999999999886322 233333333 22 478999999999987432 22335555543221110000
Q ss_pred ---------------------------------ccCC-----------CCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 158 ---------------------------------VNLD-----------NTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 158 ---------------------------------~~~~-----------~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+.++ -......+++..||.++.|+..+++.|.+++
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhc
Confidence 0000 0012346899999999999999999998764
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-19 Score=130.19 Aligned_cols=152 Identities=23% Similarity=0.316 Sum_probs=110.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeE-EEEEEcCChhhh-------HHhHHhhhccCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIK-FKAFDLGGHQMA-------RRVWKDYYAKVD 89 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~-~~~~D~~g~~~~-------~~~~~~~~~~~d 89 (193)
..++++|.||||||||++.++..+.. ..++ |..|+..++.++... +.+-|.||.-+- ...+.+.++.++
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 36899999999999999999987754 3333 667777888887654 889999994322 223345678999
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHh-CCCCCCCcEEEEeeCCCCCCCCCH--HHHHHhhCCCccccCCCcccCCCC
Q 029453 90 AVVYLIDAYDK---ERFSESKRELDALLS-DEALADVPFLILGNKIDIPYAASE--DELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 90 ~ii~v~d~~~~---~~~~~~~~~~~~~~~-~~~~~~~pviiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
.++||+|.+.+ ..++.....+.++-. ...+.+.|.++|+||+|++..+.. .++.+.+..
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~--------------- 341 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQN--------------- 341 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCC---------------
Confidence 99999999987 556665555555432 345578999999999999622211 233333322
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
..++++||+.++|+.++++.|...
T Consensus 342 ----~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 342 ----PHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred ----CcEEEeeeccccchHHHHHHHhhc
Confidence 258999999999999999988653
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-19 Score=144.77 Aligned_cols=155 Identities=18% Similarity=0.106 Sum_probs=100.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc--CCCCCcc----eeEEEe-CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQH--QPTQYPT----SEELSI-GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~--~~t~~~~----~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
-|+++|++++|||||++++.+...... +...+.+ ...+.. ++..+.+||+|||+++.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999986432211 1112222 222222 356789999999999988777888999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+|++++- .........++.. .++| +++|+||+|+......++....+.... . .......+++++
T Consensus 82 Vda~eg~--~~qT~ehl~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l-~---------~~~~~~~~ii~V 146 (614)
T PRK10512 82 VACDDGV--MAQTREHLAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVL-R---------EYGFAEAKLFVT 146 (614)
T ss_pred EECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHH-H---------hcCCCCCcEEEE
Confidence 9998742 2222222233332 2455 679999999964322222222221111 0 000123579999
Q ss_pred eeecCCChhHHHHhhhhh
Q 029453 174 SIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~ 191 (193)
||++|.|+++++++|.+.
T Consensus 147 SA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 147 AATEGRGIDALREHLLQL 164 (614)
T ss_pred eCCCCCCCHHHHHHHHHh
Confidence 999999999999999753
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=121.17 Aligned_cols=154 Identities=20% Similarity=0.265 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce--eEEEeCCeEEEEEEcCChh----------hhHHhHHhhhc--
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS--EELSIGKIKFKAFDLGGHQ----------MARRVWKDYYA-- 86 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~~~-- 86 (193)
.|+++|.+|||||||++.+.+.... ...++.+.+. .....+ ..+.+|||||.. .+......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 4899999999999999999954433 3333333222 222333 388999999943 23334444443
Q ss_pred -cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 87 -KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 87 -~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
.++.+++++|..+.... ....+...+.. .+.|+++++||+|+................. +. ..
T Consensus 80 ~~~~~~~~v~d~~~~~~~--~~~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l-~~----------~~ 143 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTE--IDLEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKEL-KL----------FE 143 (170)
T ss_pred hhhhEEEEEEEcCcCCCH--hHHHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHH-Hh----------cc
Confidence 46788999999765221 11112222222 2589999999999964333222222221111 00 01
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||+++.|+++++++|.+.+
T Consensus 144 ~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 144 IDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 335789999999999999999998764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=140.88 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=108.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC--Ccccc-------------C----CCCCcceeEEEeCCeEEEEEEcCChhhhHHhHH
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE--RLVQH-------------Q----PTQYPTSEELSIGKIKFKAFDLGGHQMARRVWK 82 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~--~~~~~-------------~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (193)
+|+++|+.++|||||++++... .+... + .|.......+.+.+..+.+||||||.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 6999999999999999999752 22111 0 122233446778899999999999999998888
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCCCccccCCCccc
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGLTNFTTGKGNVN 159 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~ 159 (193)
.++..+|++++|+|+.+.. ......++..+.. .++|+++|+||+|+..... .+++.+.+..... ..
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~----~~-- 151 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGA----DD-- 151 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcc----cc--
Confidence 8999999999999998752 2333444444433 4789999999999864322 1223332221110 00
Q ss_pred CCCCCCccEEEEEEeeecCC----------ChhHHHHhhhhhc
Q 029453 160 LDNTNVRPLEVFMCSIVRKM----------GYGEGFKWLSQYI 192 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~~~----------gi~~~~~~i~~~l 192 (193)
....++++++||++|. |+..+++.|.+.+
T Consensus 152 ----e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 152 ----EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred ----ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 0023579999999996 7999999987754
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.8e-19 Score=128.33 Aligned_cols=168 Identities=19% Similarity=0.151 Sum_probs=107.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhh------------hHHhH
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQM------------ARRVW 81 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~------------~~~~~ 81 (193)
.+...|+++|+||+|||||.|++.+.+....+. |+......+.-+...+.++||||... +.+-.
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 578899999999999999999999998765433 55556677777889999999999221 11122
Q ss_pred HhhhccCCEEEEEEeCCChhhH--HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHhhCCCcc-------
Q 029453 82 KDYYAKVDAVVYLIDAYDKERF--SESKRELDALLSDEALADVPFLILGNKIDIPYAA-SEDELRYHMGLTNF------- 151 (193)
Q Consensus 82 ~~~~~~~d~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~-~~~~~~~~~~~~~~------- 151 (193)
...+..+|+++.|+|+++.... ......+..+ .++|-++|.||.|....- ..-.+...+.....
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 3456789999999999963211 1122333333 478999999999975211 11111111111110
Q ss_pred ----ccCCC-cccC-CCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 152 ----TTGKG-NVNL-DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 152 ----~~~~~-~~~~-~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...++ ...- .-.+.....+|++||++|+|++++.+||..+
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsq 269 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQ 269 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhc
Confidence 00000 0000 0011235689999999999999999998764
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=142.14 Aligned_cols=158 Identities=15% Similarity=0.178 Sum_probs=107.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCcccc-------------CCCCC----cceeEEEeCCeEEEEEEcCChhhhHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD--ERLVQH-------------QPTQY----PTSEELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~--~~~~~~-------------~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
--+|+++|+.++|||||++++.. +.+... +.+.+ .....+.+++..+.+|||||+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 34899999999999999999986 222211 11222 223345677899999999999999988
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccccCCCc
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFTTGKGN 157 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~ 157 (193)
+..+++.+|++++|+|+.+.... .....+..... .++|.++++||+|+...... +++...+.... ..
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~---~~-- 154 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLD---AT-- 154 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccC---cc--
Confidence 89999999999999999875322 22223333322 47899999999998743332 23333332111 00
Q ss_pred ccCCCCCCccEEEEEEeeecCC----------ChhHHHHhhhhhc
Q 029453 158 VNLDNTNVRPLEVFMCSIVRKM----------GYGEGFKWLSQYI 192 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~~~----------gi~~~~~~i~~~l 192 (193)
.....++++++||++|. |+..+++.|.+.+
T Consensus 155 -----~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 155 -----DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred -----ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 01134789999999998 5888888887654
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.1e-19 Score=142.81 Aligned_cols=162 Identities=17% Similarity=0.197 Sum_probs=101.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC-----CCCcceeEEEe---------C-------CeEEEEEEcCChh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-----TQYPTSEELSI---------G-------KIKFKAFDLGGHQ 75 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~~~~~~~---------~-------~~~~~~~D~~g~~ 75 (193)
..+++.|+++|++++|||||++++.+.......+ +.+........ . -..+.+||||||+
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 3577899999999999999999998665433222 11111100000 0 0126899999999
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-------------
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYD---KERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE------------- 139 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~------------- 139 (193)
.|..++......+|++++|+|+++ ++++... .++.. .+.|+++++||+|+.+....
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 999888888889999999999987 3333222 12222 47899999999998521110
Q ss_pred -HHHH-----------HhhCCCccccCCCcccC--CCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 140 -DELR-----------YHMGLTNFTTGKGNVNL--DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 140 -~~~~-----------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
.... ..+... +...+.. ...+....+++++||++|+|++++++.+..
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~----g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSEL----GFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc----CCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0001 111100 0000000 011234578999999999999999988753
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8e-18 Score=124.39 Aligned_cols=169 Identities=17% Similarity=0.174 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHhCCCC-cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChh---
Q 029453 3 LVDWFYGILVSLGLWQ-KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQ--- 75 (193)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~--- 75 (193)
++.-+...+.++|... ..+.|.+.|+||+|||||++.+.+.+.. ..+| |.+.+.+.+..+...+.++||||.-
T Consensus 150 fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP 229 (346)
T COG1084 150 FLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRP 229 (346)
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCC
Confidence 3455566777777777 7889999999999999999999987755 4555 7778889999999999999999921
Q ss_pred --h----hHHhHHhhhccCCEEEEEEeCCC--hhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhC
Q 029453 76 --M----ARRVWKDYYAKVDAVVYLIDAYD--KERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMG 147 (193)
Q Consensus 76 --~----~~~~~~~~~~~~d~ii~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~ 147 (193)
+ ......+.-+-.++++|++|.+. .-+++.....+.++-..+ +.|+++|+||+|.......+++...+.
T Consensus 230 l~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~ 306 (346)
T COG1084 230 LEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVL 306 (346)
T ss_pred hHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHH
Confidence 1 11122222345899999999986 445666777777775543 489999999999975555555554432
Q ss_pred CCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 148 LTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
..- ......+|+..+.+++.+.+.+..
T Consensus 307 ~~~----------------~~~~~~~~~~~~~~~d~~~~~v~~ 333 (346)
T COG1084 307 EEG----------------GEEPLKISATKGCGLDKLREEVRK 333 (346)
T ss_pred hhc----------------cccccceeeeehhhHHHHHHHHHH
Confidence 221 224567788888888877766644
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=133.47 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=114.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcceeEEEeC---CeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP---TQYPTSEELSIG---KIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
.+.+-|+++|+...|||||+..+-.......+. |.......+..+ ...+.++|||||+.|..+....-+-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 467889999999999999999998877665443 444444555553 35899999999999999998888889999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
++|+++++. +......-...++. .+.|+++++||+|++. ..++....++...-+ .+..+.+...++
T Consensus 83 ILVVa~dDG--v~pQTiEAI~hak~---a~vP~iVAiNKiDk~~-~np~~v~~el~~~gl--------~~E~~gg~v~~V 148 (509)
T COG0532 83 ILVVAADDG--VMPQTIEAINHAKA---AGVPIVVAINKIDKPE-ANPDKVKQELQEYGL--------VPEEWGGDVIFV 148 (509)
T ss_pred EEEEEccCC--cchhHHHHHHHHHH---CCCCEEEEEecccCCC-CCHHHHHHHHHHcCC--------CHhhcCCceEEE
Confidence 999999986 22222211222222 5899999999999974 334443333332211 112344568999
Q ss_pred EEeeecCCChhHHHHhhh
Q 029453 172 MCSIVRKMGYGEGFKWLS 189 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~ 189 (193)
++||++|+|++++++.|.
T Consensus 149 pvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 149 PVSAKTGEGIDELLELIL 166 (509)
T ss_pred EeeccCCCCHHHHHHHHH
Confidence 999999999999999874
|
|
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-20 Score=125.13 Aligned_cols=157 Identities=15% Similarity=0.262 Sum_probs=121.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc----eeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT----SEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
.+.-+|++++|+.++||||++++++.+-+.. +..|.+.. ...+........+||++|++++.....+|++.+.+.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 4567899999999999999999999877763 33343322 112233445677999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|++-+|..+|+....|...+.... ..+|.++|-||+|+..+ ...++.+-...... +.
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~-----------------~R 157 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH-----------------KR 157 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhh-----------------hh
Confidence 99999999999999999999996553 57999999999999732 22223222222111 35
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+.+|++...|+..+|..|.+.+
T Consensus 158 lyRtSvked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 158 LYRTSVKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHH
Confidence 58899999999999999987653
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-18 Score=133.49 Aligned_cols=164 Identities=19% Similarity=0.151 Sum_probs=102.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc------------c---c--CC--CCCcceeEEEeCCeEEEEEEcCChhh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV------------Q---H--QP--TQYPTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~------------~---~--~~--t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
..++.++|+++|++++|||||+++|.+.... . . .. |.......+..++..+.++|||||++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence 4678899999999999999999999753110 0 0 00 22222222333567889999999999
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCCHHH-HHHhhCCCccccC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAASEDE-LRYHMGLTNFTTG 154 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~ 154 (193)
|..........+|++++|+|+.++- ......+..++.. .++| +++++||+|+.......+ +.+++....-...
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~--~~~t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGP--MPQTREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 8777777778899999999998752 2222222223222 3677 678899999863222111 2212211110000
Q ss_pred CCcccCCCCCCccEEEEEEeeecCC--------ChhHHHHhhhhhc
Q 029453 155 KGNVNLDNTNVRPLEVFMCSIVRKM--------GYGEGFKWLSQYI 192 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~~~--------gi~~~~~~i~~~l 192 (193)
. .....+++++||++|. ++.++++.|.+.+
T Consensus 163 ~--------~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 163 F--------PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred C--------CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 0 0123689999999983 6788888876643
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-19 Score=123.56 Aligned_cols=122 Identities=23% Similarity=0.345 Sum_probs=75.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe---CCeEEEEEEcCChhhhHHhHHhh---hccCCEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSI---GKIKFKAFDLGGHQMARRVWKDY---YAKVDAVV 92 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~---~~~~d~ii 92 (193)
++..|.++|++|||||+|+.+|..+....+.....++. .... .+..+.++|+|||++.+...... ...+.++|
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 45689999999999999999999987665554443333 2333 34689999999999887644443 77899999
Q ss_pred EEEeCCC-hhhHHHHHHHHHHHHhC--CCCCCCcEEEEeeCCCCCCCCCHHH
Q 029453 93 YLIDAYD-KERFSESKRELDALLSD--EALADVPFLILGNKIDIPYAASEDE 141 (193)
Q Consensus 93 ~v~d~~~-~~~~~~~~~~~~~~~~~--~~~~~~pviiv~nK~Dl~~~~~~~~ 141 (193)
||+|++. ...+......+-.++.. .....+|++|++||.|+..+.....
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~ 132 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKK 132 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHH
Confidence 9999984 33344433333333332 2346799999999999986555444
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-17 Score=124.58 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=109.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeC-CeEEEEEEcCChh---------hhHHhHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIG-KIKFKAFDLGGHQ---------MARRVWKD 83 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~D~~g~~---------~~~~~~~~ 83 (193)
.+.-+.|+++|-.|||||||+|++.+..... --.|-+++...+.++ +..+.+-||.|.- .|.+...
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLE- 267 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLE- 267 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHH-
Confidence 4566799999999999999999998665432 223778888888887 5788899999932 3333333
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
....+|.++.|+|++++.....+... ..++...+...+|+++|.||+|+..+..........
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v-~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~----------------- 329 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAV-EDVLAEIGADEIPIILVLNKIDLLEDEEILAELERG----------------- 329 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHH-HHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhc-----------------
Confidence 24579999999999999644444443 344444444679999999999987543311100000
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
. ...+.+||++|.|++.+++.|...+
T Consensus 330 --~-~~~v~iSA~~~~gl~~L~~~i~~~l 355 (411)
T COG2262 330 --S-PNPVFISAKTGEGLDLLRERIIELL 355 (411)
T ss_pred --C-CCeEEEEeccCcCHHHHHHHHHHHh
Confidence 0 1579999999999999999988754
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=130.42 Aligned_cols=163 Identities=15% Similarity=0.157 Sum_probs=100.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcC-------Ccc-----c---cCC----CCCcceeEEEeCCeEEEEEEcCChhh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDE-------RLV-----Q---HQP----TQYPTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~-------~~~-----~---~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
..++.++|+++|++++|||||+++|.+. ... . .+. |.......+..++..+.++|||||++
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 4567889999999999999999999852 100 0 000 11112223344567899999999998
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEE-EEeeCCCCCCCCC-HHHHHHhhCCCccccC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFL-ILGNKIDIPYAAS-EDELRYHMGLTNFTTG 154 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~ 154 (193)
+.......+..+|++++|+|+.+... ......+ .++.. .++|.+ +++||+|+..... .+.+..++.... ...
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l-~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l-~~~ 161 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHI-LLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELL-SKY 161 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHH-HHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHH-HHc
Confidence 87777777889999999999987421 1122222 22222 367855 5799999963221 111222221111 000
Q ss_pred CCcccCCCCCCccEEEEEEeeecCC----------ChhHHHHhhhhh
Q 029453 155 KGNVNLDNTNVRPLEVFMCSIVRKM----------GYGEGFKWLSQY 191 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~~~----------gi~~~~~~i~~~ 191 (193)
.......+++++||++|. ++.++++.|.+.
T Consensus 162 -------~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 162 -------DFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred -------CCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 000024689999999984 567777777653
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=130.21 Aligned_cols=152 Identities=16% Similarity=0.114 Sum_probs=95.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc---------------cC--C--CCCcceeEEEeCCeEEEEEEcCChhh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ---------------HQ--P--TQYPTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~---------------~~--~--t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
..+..++|+++|++++|||||+++|.+..-.. .+ + |.......+..++..+.++|||||..
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 35678999999999999999999998642110 00 0 11222223444667899999999998
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HHHHHHhhCCCccccC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAAS-EDELRYHMGLTNFTTG 154 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~ 154 (193)
+.......+..+|++++|+|+.++- ......+..++.. .++| +++++||+|+..... .+.+.+++.... ...
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~--~~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l-~~~ 161 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGP--MPQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELL-SKY 161 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHH-HHh
Confidence 8777777788999999999998652 2333223333332 3678 778999999974222 122222222111 100
Q ss_pred CCcccCCCCCCccEEEEEEeeecCCC
Q 029453 155 KGNVNLDNTNVRPLEVFMCSIVRKMG 180 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~~~g 180 (193)
. . .....+++++||.+|.+
T Consensus 162 ~----~---~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 162 D----F---PGDDIPIVSGSALLALE 180 (409)
T ss_pred C----C---CCCcceEEEcchhhccc
Confidence 0 0 00236899999998864
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-17 Score=122.60 Aligned_cols=123 Identities=17% Similarity=0.101 Sum_probs=85.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc--c---cc----------------CCCCCcceeEEEeCCeEEEEEEcCChhhhHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL--V---QH----------------QPTQYPTSEELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~--~---~~----------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
+|+++|++|+|||||++++....- . .. ..|.......+.+++..+.++||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999863110 0 00 01223344567788999999999999988888
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC---CHHHHHHhhCCC
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA---SEDELRYHMGLT 149 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~---~~~~~~~~~~~~ 149 (193)
+...++.+|++++|+|+.+...- .....+..+ .. .++|+++++||+|+.+.. ..+++...++..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~-~~---~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~ 147 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEP-QTETVWRQA-DR---YNVPRIAFVNKMDRTGADFFRVVEQIREKLGAN 147 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHH-HH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCC
Confidence 88889999999999999875321 122333333 22 478999999999987432 234455555544
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-17 Score=121.65 Aligned_cols=122 Identities=18% Similarity=0.189 Sum_probs=84.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc--cc---c------CC--------------CCCcceeEEEeCCeEEEEEEcCChhh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL--VQ---H------QP--------------TQYPTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~--~~---~------~~--------------t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
+|+++|++|+|||||++++....- .. . .. +.......+.+.+..+.+|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 699999999999999999864211 00 0 00 11122346778889999999999998
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGL 148 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~ 148 (193)
+.......+..+|++++|+|+++.... ....++. .... .++|+++++||+|+..... .++++..++.
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~-~~~~---~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~ 153 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFE-VCRL---RGIPIITFINKLDREGRDPLELLDEIEEELGI 153 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHH-HHHh---cCCCEEEEEECCccCCCCHHHHHHHHHHHHCC
Confidence 877667778899999999999875321 2223332 2222 4789999999999875433 3456665553
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=131.61 Aligned_cols=149 Identities=20% Similarity=0.132 Sum_probs=94.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--c------------c----------------------CCCCCcceeEEEeCCe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV--Q------------H----------------------QPTQYPTSEELSIGKI 64 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~--~------------~----------------------~~t~~~~~~~~~~~~~ 64 (193)
++|+++|++++|||||++++....-. . . ..|.......+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999998532210 0 0 0022333445556778
Q ss_pred EEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHH
Q 029453 65 KFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS--EDEL 142 (193)
Q Consensus 65 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~~~~ 142 (193)
.+.++|||||++|.......+..+|++++|+|+..+- .........++... ...++++++||+|+..... .++.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~--~~qt~~~~~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGV--LEQTRRHSYIASLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCC--ccccHHHHHHHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 9999999999998776677788999999999998652 22222222222221 2346899999999964221 1112
Q ss_pred HHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 143 RYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
...+.... .. ......+++++||++|.|+++
T Consensus 157 ~~~~~~~~-~~---------~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFA-EQ---------LGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHH-HH---------cCCCCccEEEeecccCCCCcc
Confidence 22221100 00 001235799999999999986
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-17 Score=110.73 Aligned_cols=161 Identities=17% Similarity=0.243 Sum_probs=116.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT--SEELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..-++||+++|.+..|||||+-.+.++.+... ..+.+.+ ..++.. ....+.+||.+|++++..+.+-...++-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 44678999999999999999999999888632 2233332 234444 446899999999999999888888899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
++++|.+.++++.....|++.... .+..-+|+ +|+||.|+.-.-++ +++..+-. .+..+ -+.
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~-~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar--~YAk~-----------mnA 161 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARG-LNKTAIPI-LVGTKYDLFIDLPPELQETISRQAR--KYAKV-----------MNA 161 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhc-cCCccceE-EeccchHhhhcCCHHHHHHHHHHHH--HHHHH-----------hCC
Confidence 999999999999999999998854 33344664 56999997622222 22211110 10111 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+.||+....|+.++|..+..++
T Consensus 162 sL~F~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 162 SLFFCSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred cEEEeeccccccHHHHHHHHHHHH
Confidence 679999999999999999876543
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-17 Score=128.12 Aligned_cols=116 Identities=21% Similarity=0.203 Sum_probs=78.1
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCc------------cc-------cCCCCCcceeEEEeCCeEEEEEEcCChh
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERL------------VQ-------HQPTQYPTSEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~------------~~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (193)
...++.++|+++|+.++|||||+++|.+... .. ...|.......+..++..+.+||||||+
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 3457889999999999999999999973210 00 0112222233344456789999999999
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEE-EEeeCCCCCC
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFL-ILGNKIDIPY 135 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~Dl~~ 135 (193)
+|..........+|++++|+|+.++- ......+..++.. .++|.+ +++||+|+.+
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~--~~qt~e~l~~~~~---~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGP--MPQTREHILLARQ---VGVPYIVVFLNKCDMVD 142 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCEEEEEEEecccCC
Confidence 98877777778899999999998742 1222222222222 256655 6899999864
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.4e-17 Score=128.80 Aligned_cols=153 Identities=15% Similarity=0.111 Sum_probs=96.3
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc---------------ccCCCCC----cceeEEEeCCeEEEEEEcCCh
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLV---------------QHQPTQY----PTSEELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~---------------~~~~t~~----~~~~~~~~~~~~~~~~D~~g~ 74 (193)
....++.++|+++|++++|||||+++|.+.... ..+...+ .....+..++..+.++|+|||
T Consensus 75 ~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh 154 (478)
T PLN03126 75 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 154 (478)
T ss_pred hhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH
Confidence 334667889999999999999999999852110 0011112 122334556788999999999
Q ss_pred hhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HHHHHHhhCCCccc
Q 029453 75 QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAAS-EDELRYHMGLTNFT 152 (193)
Q Consensus 75 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~-~~~~~~~~~~~~~~ 152 (193)
++|.......+..+|++++|+|+.+.. ......+..++.. .++| +++++||+|+.+... .+.+.+++.... .
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~--~~qt~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l-~ 228 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGP--MPQTKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELL-S 228 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHH-H
Confidence 999887777788999999999998753 2222222233333 3677 778999999964221 121222221111 0
Q ss_pred cCCCcccCCCCCCccEEEEEEeeecCC
Q 029453 153 TGKGNVNLDNTNVRPLEVFMCSIVRKM 179 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 179 (193)
.. .......+++++|+.+|.
T Consensus 229 ~~-------g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 229 SY-------EFPGDDIPIISGSALLAL 248 (478)
T ss_pred hc-------CCCcCcceEEEEEccccc
Confidence 00 000134789999998875
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-17 Score=131.80 Aligned_cols=156 Identities=18% Similarity=0.099 Sum_probs=97.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc--c------------cCC----------------------CCCcceeEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV--Q------------HQP----------------------TQYPTSEEL 59 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~------------~~~----------------------t~~~~~~~~ 59 (193)
..+..++|+++|++++|||||+++|....-. . ... |.......+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 4567899999999999999999998643211 0 000 112223334
Q ss_pred EeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-
Q 029453 60 SIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS- 138 (193)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~- 138 (193)
..++..+.++|||||+.+.......+..+|++++|+|+.++- .........+.... ...|+++++||+|+.....
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~--~~qt~~~~~l~~~l--g~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGV--LDQTRRHSFIATLL--GIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc--cccchHHHHHHHHh--CCCceEEEEEeeccccchhH
Confidence 556788999999999988766666678999999999998652 12111111222221 1257899999999973221
Q ss_pred -HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHH
Q 029453 139 -EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184 (193)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 184 (193)
..++...+.... .. ..+....+++++||++|.|+++.
T Consensus 179 ~~~~i~~~l~~~~-~~--------~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFA-EQ--------LPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHH-Hh--------cCCCCCceEEEEEeecCCCcccc
Confidence 222333221100 00 00012468999999999999764
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8e-17 Score=106.26 Aligned_cols=160 Identities=19% Similarity=0.266 Sum_probs=115.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCccee-EEE---eCCeEEEEEEcCChhhh-HHhHHhhhccCC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ---HQPTQYPTSE-ELS---IGKIKFKAFDLGGHQMA-RRVWKDYYAKVD 89 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~-~~~---~~~~~~~~~D~~g~~~~-~~~~~~~~~~~d 89 (193)
.+.-||++.|..++|||++++++..+.-.. ..+|...... .++ .-.-.+.++||.|.... ..+..+|++-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 356799999999999999999998766442 3344433321 111 11246899999997665 667778999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++++|++..++++|+.....-..+-+......+|+++++||+|+.+....+--........ +.+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~r---------------Ekvk 151 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKR---------------EKVK 151 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhh---------------hhee
Confidence 9999999999999988776666665455557799999999999963333322222222222 4467
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++++.++..+-+-|..+..++
T Consensus 152 l~eVta~dR~sL~epf~~l~~rl 174 (198)
T KOG3883|consen 152 LWEVTAMDRPSLYEPFTYLASRL 174 (198)
T ss_pred EEEEEeccchhhhhHHHHHHHhc
Confidence 88999999999999988887654
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.2e-17 Score=127.31 Aligned_cols=163 Identities=17% Similarity=0.133 Sum_probs=101.7
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc------------c---c--CC--CCCcceeEEEeCCeEEEEEEcCChhh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV------------Q---H--QP--TQYPTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~------------~---~--~~--t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
..++.++|+++|++++|||||+++|.+.... . . .. |.......+..++..+.++||||+.+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 4578899999999999999999999863110 0 0 00 22222223334567899999999998
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEE-EEeeCCCCCCCCC-HHHHHHhhCCCccccC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFL-ILGNKIDIPYAAS-EDELRYHMGLTNFTTG 154 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~ 154 (193)
+.......+..+|++++|+|+.++- ......+..++.. .++|.+ +++||+|+..... .+.+..++.... ...
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~--~~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l-~~~ 161 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGP--MPQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELL-SKY 161 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCC--chHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHH-Hhc
Confidence 8777777788999999999998752 2222222233332 367876 5899999964211 111222221111 000
Q ss_pred CCcccCCCCCCccEEEEEEeeecCC----------ChhHHHHhhhhh
Q 029453 155 KGNVNLDNTNVRPLEVFMCSIVRKM----------GYGEGFKWLSQY 191 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~~~----------gi~~~~~~i~~~ 191 (193)
.......+++++||.++. ++..+++.|.+.
T Consensus 162 -------~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 162 -------DFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred -------CCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 000124688999999875 566777777653
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-17 Score=130.04 Aligned_cols=126 Identities=18% Similarity=0.206 Sum_probs=86.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc--CCcc---cc----------------CC----CCCcceeEEEeCCeEEEEEEcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD--ERLV---QH----------------QP----TQYPTSEELSIGKIKFKAFDLG 72 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~--~~~~---~~----------------~~----t~~~~~~~~~~~~~~~~~~D~~ 72 (193)
.+.-+|+++|++++|||||++++.. +... .. +. +.......+.+++..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3456999999999999999999863 1110 00 00 1112234567788999999999
Q ss_pred ChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCC
Q 029453 73 GHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGL 148 (193)
Q Consensus 73 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~ 148 (193)
|+..+......++..+|++++|+|+++.-.. ....++... .. .++|+++++||+|+..... .+++...++.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~-~~---~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~ 161 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC-RL---RDTPIFTFINKLDRDGREPLELLDEIEEVLGI 161 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH-Hh---cCCCEEEEEECCcccccCHHHHHHHHHHHhCC
Confidence 9998887777788999999999999875211 222333222 22 5899999999999874433 2456555554
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=126.20 Aligned_cols=165 Identities=15% Similarity=0.115 Sum_probs=101.2
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcC------Ccc-c--------c----CCCCCcceeEEEeCCeEEEEEEcCCh
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDE------RLV-Q--------H----QPTQYPTSEELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~------~~~-~--------~----~~t~~~~~~~~~~~~~~~~~~D~~g~ 74 (193)
....++.++|+++|++++|||||+++|.+. ... . . ..|.......++.++..+.++|||||
T Consensus 55 ~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh 134 (447)
T PLN03127 55 FTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGH 134 (447)
T ss_pred hhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCc
Confidence 444668899999999999999999999622 100 0 0 01223333344456678999999999
Q ss_pred hhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCCH-HHHHHhhCCCccc
Q 029453 75 QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAASE-DELRYHMGLTNFT 152 (193)
Q Consensus 75 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~~-~~~~~~~~~~~~~ 152 (193)
.++..........+|++++|+|+.++. ......+..++.. .++| +++++||+|+...... +.+..++.... .
T Consensus 135 ~~f~~~~~~g~~~aD~allVVda~~g~--~~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l-~ 208 (447)
T PLN03127 135 ADYVKNMITGAAQMDGGILVVSAPDGP--MPQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELL-S 208 (447)
T ss_pred cchHHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHH-H
Confidence 988776666677899999999998752 2323333333333 3678 5788999999642211 11221211110 0
Q ss_pred cCCCcccCCCCCCccEEEEEEeee---cCCC-------hhHHHHhhhhh
Q 029453 153 TGKGNVNLDNTNVRPLEVFMCSIV---RKMG-------YGEGFKWLSQY 191 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~---~~~g-------i~~~~~~i~~~ 191 (193)
.. .......+++++|+. +|.| +.++++.|.+.
T Consensus 209 ~~-------~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 209 FY-------KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred Hh-------CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 00 000124678888765 5555 67888887654
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-17 Score=134.81 Aligned_cols=154 Identities=17% Similarity=0.076 Sum_probs=97.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc--------------C----------------------CCCCcceeEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH--------------Q----------------------PTQYPTSEEL 59 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--------------~----------------------~t~~~~~~~~ 59 (193)
.....++|+++|++++|||||++++....-... . .|.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 355678999999999999999999875331100 0 0222233355
Q ss_pred EeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-
Q 029453 60 SIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS- 138 (193)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~- 138 (193)
..++..+.++||||++.+.......+..+|++++|+|+.++. .........++... ...|+++++||+|+.....
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~--~~~t~e~~~~~~~~--~~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGV--LTQTRRHSFIASLL--GIRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCc--cccCHHHHHHHHHh--CCCeEEEEEEecccccchhH
Confidence 567788999999999988766666788999999999997652 22111122222221 2367899999999963111
Q ss_pred -HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 139 -EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
.+++..++.... .. ......+++++||++|.|+++
T Consensus 176 ~~~~i~~~i~~~~-~~---------~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFA-AK---------LGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHH-HH---------cCCCCccEEEEecccCCCccc
Confidence 122222221100 00 001235789999999999974
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.8e-17 Score=128.94 Aligned_cols=156 Identities=17% Similarity=0.101 Sum_probs=99.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCC--cc-------------------------cc---C----CCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDER--LV-------------------------QH---Q----PTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~--~~-------------------------~~---~----~t~~~~~~~~~~~ 62 (193)
.++.++|+++|+.++|||||+.++.... .. .. + .|.......+.++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 4678899999999999999999986411 00 00 0 0222233445667
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhh---H--HHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKER---F--SESKRELDALLSDEALADVP-FLILGNKIDIPYA 136 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~--~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~ 136 (193)
+..+.++|+|||.+|.......+..+|++++|+|+.++.. + +........++.. .++| +++++||+|....
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccccc
Confidence 8899999999999998888888899999999999987520 0 1122222222222 3655 6789999995421
Q ss_pred ----CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 137 ----ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
...+++.+++....-...- ....++++++|+.+|.|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~--------~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGY--------NPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCC--------CcccceEEEeecccCCCccc
Confidence 1222233333222100000 01347899999999999964
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=119.82 Aligned_cols=110 Identities=21% Similarity=0.168 Sum_probs=79.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--c---c----------------CCCCCcceeEEEeCCeEEEEEEcCChhhhHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV--Q---H----------------QPTQYPTSEELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~--~---~----------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
+|+++|++|||||||++++...... . . ..+.......+.+++..+.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999998643211 0 0 11223334566778899999999999988777
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
...++..+|++++|+|+++...... ...+..+. . .++|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~-~---~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFAD-E---AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHH-H---cCCCEEEEEECCccCCC
Confidence 7888899999999999987643322 22233222 2 47899999999998754
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.2e-17 Score=117.09 Aligned_cols=108 Identities=21% Similarity=0.254 Sum_probs=75.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc------------------CC----CCCcceeEEEe-----CCeEEEEEEcCCh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQH------------------QP----TQYPTSEELSI-----GKIKFKAFDLGGH 74 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~------------------~~----t~~~~~~~~~~-----~~~~~~~~D~~g~ 74 (193)
+|+++|++|+|||||++++........ +. +.......+.+ ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999976432211 00 11111122222 2378999999999
Q ss_pred hhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 75 QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 75 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.++......++..+|++++|+|+++..+.. ...++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECcccC
Confidence 998877788889999999999998765432 2233333322 358999999999985
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-16 Score=103.16 Aligned_cols=103 Identities=25% Similarity=0.423 Sum_probs=71.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--c--CCCCCcceeEEEeCCeEEEEEEcCChhh---------hHHhHHhhhccC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ--H--QPTQYPTSEELSIGKIKFKAFDLGGHQM---------ARRVWKDYYAKV 88 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~--~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~~ 88 (193)
+|+|+|.+|||||||+|.+.+..... . ..|.......+.+++..+.++||||... ........+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 68999999999999999999864332 2 2244454566678889999999999421 111223334789
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeC
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNK 130 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK 130 (193)
|++++|+|++++.. ......+..+ + .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence 99999999877421 2223333333 2 58999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=132.22 Aligned_cols=114 Identities=19% Similarity=0.075 Sum_probs=85.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc---------------------ccCCCCCcceeEEEeCCeEEEEEEcCChhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV---------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
++-.+|+++|+.|+|||||++++....-. ....|.......+.+++..+.+|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 34569999999999999999999742210 011133344456778889999999999999
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
+......+++.+|++++|+|+++....+.. ..+..+. . .++|+++++||+|+...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~-~---~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQAD-R---YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHH-h---cCCCEEEEEECCCCCCC
Confidence 888888889999999999999886544433 2333332 2 47899999999998743
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-17 Score=117.31 Aligned_cols=160 Identities=13% Similarity=0.145 Sum_probs=93.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc-----ceeEEEeC-CeEEEEEEcCChhhhHH-----hHHhhhcc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP-----TSEELSIG-KIKFKAFDLGGHQMARR-----VWKDYYAK 87 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-----~~~~~~~~-~~~~~~~D~~g~~~~~~-----~~~~~~~~ 87 (193)
+++|+++|.+|||||||+|.+.+..... ...+.+. ....+... ...+.+|||||...... .....+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4689999999999999999998855432 1111111 11111111 24689999999643211 11222567
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CC--------CHHHHHHhhCCCccccCCCcc
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY-AA--------SEDELRYHMGLTNFTTGKGNV 158 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~-~~--------~~~~~~~~~~~~~~~~~~~~~ 158 (193)
+|++++|.+. ++......+...+.. .+.|+++|+||+|+.. .. ..+++...+.....+...
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~--- 150 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQ--- 150 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHH---
Confidence 8988887543 244444444444433 2689999999999852 11 122333222222211100
Q ss_pred cCCCCCCccEEEEEEeee--cCCChhHHHHhhhhhc
Q 029453 159 NLDNTNVRPLEVFMCSIV--RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~--~~~gi~~~~~~i~~~l 192 (193)
.......+++.+|+. .+.++..+.+.|...|
T Consensus 151 ---~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l 183 (197)
T cd04104 151 ---EAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL 183 (197)
T ss_pred ---HcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence 001233589999998 6899999999987654
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=126.24 Aligned_cols=163 Identities=20% Similarity=0.103 Sum_probs=102.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccC--C----CCCccee---------------EEEe--------------
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ--P----TQYPTSE---------------ELSI-------------- 61 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~--~----t~~~~~~---------------~~~~-------------- 61 (193)
.+..++|+++|+...|||||+..|.+....... . |...... ...+
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 467889999999999999999999864432110 0 1100000 0000
Q ss_pred ----CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q 029453 62 ----GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA 137 (193)
Q Consensus 62 ----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~ 137 (193)
-...+.++|+|||+.+..........+|++++|+|+.++. ..........++... .-.|+++|+||+|+....
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~-~~~qT~ehl~i~~~l--gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESC-PQPQTSEHLAAVEIM--KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCc-cchhhHHHHHHHHHc--CCCcEEEEEecccccCHH
Confidence 0246889999999999887777888999999999998741 111111222222221 235689999999997432
Q ss_pred CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++...++.... .. ......+++++||++|.|++++++.|.+.+
T Consensus 188 ~~~~~~~ei~~~l-~~---------~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 188 QAQDQYEEIRNFV-KG---------TIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHH-Hh---------hccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 2222222221110 00 011346899999999999999999998543
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.8e-17 Score=125.89 Aligned_cols=152 Identities=17% Similarity=0.135 Sum_probs=111.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--c------------cCC----CCCcceeEEEeCC---eEEEEEEcCChhhhHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV--Q------------HQP----TQYPTSEELSIGK---IKFKAFDLGGHQMARRV 80 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~--~------------~~~----t~~~~~~~~~~~~---~~~~~~D~~g~~~~~~~ 80 (193)
+++|+.+..-|||||..++..-.-. . .+. |...+...+.+.+ ..+.++|||||-.|...
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 7899999999999999998632211 1 011 2233344455555 88999999999999887
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccC
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
..+-+.-|+++++|+|++.+-.-+.....+..+- .+..+|.|+||+|++. ..+++.+.+....+.
T Consensus 142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~-adpe~V~~q~~~lF~--------- 206 (650)
T KOG0462|consen 142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPS-ADPERVENQLFELFD--------- 206 (650)
T ss_pred ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCC-CCHHHHHHHHHHHhc---------
Confidence 7777788999999999998754455566666662 4788999999999964 445555444443330
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....+++.+|||+|.|++++++.|++++
T Consensus 207 ----~~~~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 207 ----IPPAEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred ----CCccceEEEEeccCccHHHHHHHHHhhC
Confidence 1224899999999999999999999875
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=126.49 Aligned_cols=151 Identities=19% Similarity=0.107 Sum_probs=97.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCc--c-------------------------cc---CC----CCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERL--V-------------------------QH---QP----TQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~--~-------------------------~~---~~----t~~~~~~~~~~~ 62 (193)
.++.++|+++|+.++|||||+.+|....- . .. +. |.......+..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 46788999999999999999998853210 0 00 00 112223345556
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHH------HHHHHHHHHHhCCCCCCC-cEEEEeeCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFS------ESKRELDALLSDEALADV-PFLILGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~-pviiv~nK~Dl~~ 135 (193)
+..+.++|+|||++|.......+..+|++|+|+|+.+.. ++ ........++.. .++ ++++++||+|+..
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCc
Confidence 789999999999999988888899999999999998742 21 222222222222 356 5788999999862
Q ss_pred -CCC-------HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 136 -AAS-------EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 136 -~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
... .+++...+...-+ ....++++++||++|.|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~------------~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGY------------NPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCC------------CcccceEEEEeccccccccc
Confidence 111 1122222221110 01246899999999999853
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.4e-17 Score=119.58 Aligned_cols=156 Identities=21% Similarity=0.273 Sum_probs=106.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEe-CCeEEEEEEcCChhhh-------HHhHHhhhccCCE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSI-GKIKFKAFDLGGHQMA-------RRVWKDYYAKVDA 90 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~-~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d~ 90 (193)
.|+++|.||+|||||++.++.-+.. ..+| |..|+...++. ....|.+-|.||.-+- ...+..+++++.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 5899999999999999999877654 4444 66788777775 4567999999994322 1223455788999
Q ss_pred EEEEEeCCChh---hHHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCC-CCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 91 VVYLIDAYDKE---RFSESKRELDALLSD-EALADVPFLILGNKIDIPY-AASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 91 ii~v~d~~~~~---~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
+++|+|++..+ ..+.......++-.. ....++|.++|+||+|+.. .+..+++.+.+.... .
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~--------------~ 306 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEAL--------------G 306 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhc--------------C
Confidence 99999998543 233333333333222 3457899999999999753 333344444444332 0
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+...++ +||.++.|++++...+.+.+
T Consensus 307 ~~~~~~-ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 307 WEVFYL-ISALTREGLDELLRALAELL 332 (369)
T ss_pred CCccee-eehhcccCHHHHHHHHHHHH
Confidence 111222 99999999999998876654
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-17 Score=111.99 Aligned_cols=155 Identities=19% Similarity=0.349 Sum_probs=123.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEe----CCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEELSI----GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.-++++++|..|.||||+.++...+++.. +.+|.+.......+ +.+.+..|||.|++.+......++=...++++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 46899999999999999999999999884 55677665544433 34889999999999998887777778899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
++|+...-++.....|.+++.+.. .++|+++++||.|....... .+...... ...+.++..
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k---~k~v~~~r--------------kknl~y~~i 149 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVK---AKPVSFHR--------------KKNLQYYEI 149 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccccc---cccceeee--------------cccceeEEe
Confidence 999999888899999999998764 46999999999997532211 11111111 245789999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||+.+.|.+.-|-|+...+
T Consensus 150 Saksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 150 SAKSNYNFERPFLWLARKL 168 (216)
T ss_pred ecccccccccchHHHhhhh
Confidence 9999999999999998754
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.3e-17 Score=116.23 Aligned_cols=162 Identities=16% Similarity=0.253 Sum_probs=97.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEe-CCeEEEEEEcCChhhhHH-----hHHhhhccCCEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ----HQPTQYPTSEELSI-GKIKFKAFDLGGHQMARR-----VWKDYYAKVDAV 91 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~d~i 91 (193)
||+++|+.+|||||+.+.++.+..+. -.+|.......+.. ++..+.+||+||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999999776542 24566666667764 567999999999875433 346678999999
Q ss_pred EEEEeCCChh---hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 92 VYLIDAYDKE---RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 92 i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|||+|+...+ .+..+...+..+.+. -++..+.+.++|+|+..+...++..+........... ......+
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~------~~~~~~~ 152 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELE------DLGIEDI 152 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHH------HTT-TSE
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhh------hccccce
Confidence 9999998433 223333334444332 2689999999999997543333322221111100000 0001247
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++.+|..+ +.+-+.+..|++.|
T Consensus 153 ~~~~TSI~D-~Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 153 TFFLTSIWD-ESLYEAWSKIVQKL 175 (232)
T ss_dssp EEEEE-TTS-THHHHHHHHHHHTT
T ss_pred EEEeccCcC-cHHHHHHHHHHHHH
Confidence 888888887 57888888887754
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.2e-16 Score=124.66 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=84.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc--CCccc---c----------------CCCCC----cceeEEEeCCeEEEEEEcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD--ERLVQ---H----------------QPTQY----PTSEELSIGKIKFKAFDLG 72 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~--~~~~~---~----------------~~t~~----~~~~~~~~~~~~~~~~D~~ 72 (193)
.+.-+|+++|++++|||||++++.. +.... . +...+ .....+.+++..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999852 11110 0 00111 1234566788999999999
Q ss_pred ChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCC
Q 029453 73 GHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGL 148 (193)
Q Consensus 73 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~ 148 (193)
|+..+.......+..+|++++|+|+++. +......+...... .++|+++++||+|+..... .+++...++.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~---~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~ 162 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL---RDTPIFTFMNKLDRDIRDPLELLDEVENELKI 162 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECccccCCCHHHHHHHHHHHhCC
Confidence 9998877666778899999999999875 22222222233332 4789999999999863221 2345555543
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.8e-17 Score=127.39 Aligned_cols=161 Identities=17% Similarity=0.241 Sum_probs=119.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc---eeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT---SEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~---~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
..+.+||+++|..|||||||+-.+...++....|.+-+. ...+.-...+.+++|++..+.-+....+.++++|++.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 457899999999999999999999999988655533221 12233345668999998877766777778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCCCCCH--HH-HHHhhCCCccccCCCcccCCCCCCccE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEA--LADVPFLILGNKIDIPYAASE--DE-LRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~Dl~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++.+++++++.....|..++++.. ..+.|||+|+||+|+....+. +. ....+.. +....
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~---------------f~EiE 150 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIA---------------FAEIE 150 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHH---------------hHHHH
Confidence 9999999999998877777766543 257999999999999743333 22 1111111 11334
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+.|||++-.++.++|..-++++
T Consensus 151 tciecSA~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 151 TCIECSALTLANVSELFYYAQKAV 174 (625)
T ss_pred HHHhhhhhhhhhhHhhhhhhhhee
Confidence 679999999999999998766543
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=115.62 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=53.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEe------------------------CCeEEEEEEcCCh-
Q 029453 23 ILFLGLDNSGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSI------------------------GKIKFKAFDLGGH- 74 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~------------------------~~~~~~~~D~~g~- 74 (193)
|+++|.||+|||||+|++.+.... ..+ .|..++.....+ ....+.+||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999987643 122 244444433222 2257999999997
Q ss_pred ---hhhHHh---HHhhhccCCEEEEEEeCC
Q 029453 75 ---QMARRV---WKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 75 ---~~~~~~---~~~~~~~~d~ii~v~d~~ 98 (193)
++.... +...++.+|++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 333333 233578999999999997
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=119.59 Aligned_cols=159 Identities=19% Similarity=0.193 Sum_probs=112.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcceeEEEe-CCeEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP---TQYPTSEELSI-GKIKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..+++-|-++|...-|||||+..+-+......+. |.......+.. .+..+++.|||||..|..+..+.-.-.|.++
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 4478899999999999999999998877664432 33333323333 4678999999999999999988888899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+.+.|.- +.+....+ ......+.|+++.+||+|.+. ..++...+++-..-..- ........+++
T Consensus 230 LVVAadDGV----mpQT~EaI-khAk~A~VpiVvAinKiDkp~-a~pekv~~eL~~~gi~~--------E~~GGdVQvip 295 (683)
T KOG1145|consen 230 LVVAADDGV----MPQTLEAI-KHAKSANVPIVVAINKIDKPG-ANPEKVKRELLSQGIVV--------EDLGGDVQVIP 295 (683)
T ss_pred EEEEccCCc----cHhHHHHH-HHHHhcCCCEEEEEeccCCCC-CCHHHHHHHHHHcCccH--------HHcCCceeEEE
Confidence 999998752 11111222 122236899999999999864 44445444443222110 11236689999
Q ss_pred EeeecCCChhHHHHhhh
Q 029453 173 CSIVRKMGYGEGFKWLS 189 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~ 189 (193)
+||++|.|++.+-+.+.
T Consensus 296 iSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 296 ISALTGENLDLLEEAIL 312 (683)
T ss_pred eecccCCChHHHHHHHH
Confidence 99999999999998874
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=110.00 Aligned_cols=108 Identities=20% Similarity=0.171 Sum_probs=76.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--cc-------------CC----CCCcceeEEEeC----------CeEEEEEEcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV--QH-------------QP----TQYPTSEELSIG----------KIKFKAFDLG 72 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~--~~-------------~~----t~~~~~~~~~~~----------~~~~~~~D~~ 72 (193)
+|+++|+.++|||||+++|....-. .. +. |.......+.+. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999998643211 00 00 111112222332 6789999999
Q ss_pred ChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 73 GHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 73 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
|+..+......++..+|++++|+|+.++...+. ...+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999888889999999999999998644332 233333322 368999999999985
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-17 Score=118.09 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=109.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCc-ceeEEEeCCeEEEEEEcCChhh-------hHHhHHhhh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYP-TSEELSIGKIKFKAFDLGGHQM-------ARRVWKDYY 85 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~---~t~~~-~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~ 85 (193)
.+.+.++.++|..||||||++|.++.+...... .+..+ +.....+....+.+||+||.++ ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 447889999999999999999999976544322 22222 2233445567899999999553 667778888
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-CH-----------HHHHHhhCCCcccc
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA-SE-----------DELRYHMGLTNFTT 153 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~-~~-----------~~~~~~~~~~~~~~ 153 (193)
.+.|.+++++++.++. ++.....+..+.... .+.|+++++|++|..... .+ .+...+..+.-
T Consensus 116 ~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~--- 189 (296)
T COG3596 116 PKLDLVLWLIKADDRA-LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL--- 189 (296)
T ss_pred hhccEEEEeccCCCcc-ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH---
Confidence 9999999999999885 445556666665432 348999999999986321 11 11111000000
Q ss_pred CCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 154 GKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....-...+++..|...+.|++++...++..+
T Consensus 190 -------~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~l 221 (296)
T COG3596 190 -------GRLFQEVKPVVAVSGRLPWGLKELVRALITAL 221 (296)
T ss_pred -------HHHHhhcCCeEEeccccCccHHHHHHHHHHhC
Confidence 00001234788888899999999999988754
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-15 Score=125.98 Aligned_cols=113 Identities=18% Similarity=0.085 Sum_probs=82.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC-----ccc----------------cCCCCCcceeEEEeCCeEEEEEEcCChhhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER-----LVQ----------------HQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~-----~~~----------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
+-.+|+++|++++|||||++++.... ... ...|.......+.+++..+.++||||+..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 44589999999999999999996321 000 011334445667788999999999999988
Q ss_pred HHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
.......+..+|++++|+|+.++- +.....+...+.. .++|+++++||+|+...
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~--~~qt~~i~~~~~~---~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGV--EPQSETVWRQADK---YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCC--CHHHHHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 777888889999999999998763 2222222222222 47899999999999753
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-16 Score=121.49 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=108.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--------------cCC----CCCcceeEEEe-----CCeEEEEEEcCChhhhH
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ--------------HQP----TQYPTSEELSI-----GKIKFKAFDLGGHQMAR 78 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~--------------~~~----t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~ 78 (193)
+.+++.+-.-|||||..++....-.- .+. |...+...+.+ .++.++++|||||-.|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 57888999999999999986332110 011 22223333333 34789999999999987
Q ss_pred HhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCCCccccCC
Q 029453 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGLTNFTTGK 155 (193)
Q Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~ 155 (193)
....+-+..|.++++|+|++.+-.-+.+...+..+- .+.-++-|+||+||+.+.. .+|+++.+++..
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~----- 160 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA----- 160 (603)
T ss_pred EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc-----
Confidence 766666778999999999997644455666666662 4788999999999974333 334666666555
Q ss_pred CcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 156 GNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+.+.+|||+|.|++++++.|++++
T Consensus 161 ------------~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 161 ------------SDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred ------------chheeEecccCCCHHHHHHHHHhhC
Confidence 5789999999999999999998865
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=108.06 Aligned_cols=161 Identities=8% Similarity=0.004 Sum_probs=97.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCCCCcceeEEEeCCeEEEEEEcCChhhh-------HH----hHHhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQH-----QPTQYPTSEELSIGKIKFKAFDLGGHQMA-------RR----VWKDY 84 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~----~~~~~ 84 (193)
.+|+++|.+||||||++|.+++.+.... ..|.........+++..+.++||||.... .. .....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999998875422 23555666677778899999999994322 11 11122
Q ss_pred hccCCEEEEEEeCCChh-hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 85 YAKVDAVVYLIDAYDKE-RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
...+|++++|+++.+.. ........+..++.. ..-.++++++|++|.......+++...... .+.... ..
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~-~l~~l~-----~~- 151 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDDLEGGTLEDYLENSCE-ALKRLL-----EK- 151 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccccCCCcHHHHHHhccH-HHHHHH-----HH-
Confidence 35689999999997621 112233333333221 112689999999998755444443222210 000000 00
Q ss_pred CCccEEEEEE-----eeecCCChhHHHHhhhhhc
Q 029453 164 NVRPLEVFMC-----SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~-----Sa~~~~gi~~~~~~i~~~l 192 (193)
... .++.. |+..+.+++++++.|.+.+
T Consensus 152 c~~--r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 152 CGG--RYVAFNNKAKGEEQEQQVKELLAKVESMV 183 (196)
T ss_pred hCC--eEEEEeCCCCcchhHHHHHHHHHHHHHHH
Confidence 001 12222 4677889999999987654
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-15 Score=125.08 Aligned_cols=111 Identities=17% Similarity=0.055 Sum_probs=81.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-----cc----------------CCCCCcceeEEEeCCeEEEEEEcCChhhhHH
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-----QH----------------QPTQYPTSEELSIGKIKFKAFDLGGHQMARR 79 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-----~~----------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (193)
-+|+++|++++|||||++++....-. .. ..|.......+.+++..+.+|||||+.++..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 48999999999999999999632110 00 1123344556778899999999999988877
Q ss_pred hHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 80 VWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
.....+..+|++++|+|+.++...+. ...+..+ .. .++|+++++||+|+...
T Consensus 91 ~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~-~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 91 EVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQA-NR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence 77788899999999999987643332 2233322 22 46899999999999753
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=116.08 Aligned_cols=157 Identities=18% Similarity=0.167 Sum_probs=101.7
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc--c--------------------------c--CC----CCCcceeEEEe
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV--Q--------------------------H--QP----TQYPTSEELSI 61 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~--------------------------~--~~----t~~~~~~~~~~ 61 (193)
..+.+++++++|+..+|||||+.+|+...-. . . +. |.......++-
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 3467899999999999999999998632110 0 0 00 22223334455
Q ss_pred CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh---h--HHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 62 GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE---R--FSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
....+.++|+|||..|..-+....+++|++|+|+|+++.+ . ..+......-+.+.. .-..+++++||+|+..
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~- 159 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVS- 159 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEcccccc-
Confidence 6678999999999999888778889999999999998763 1 223334444443332 2356889999999985
Q ss_pred CCHH---HHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 137 ASED---ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 137 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
.+.+ ++..+... ..+.. .......+++|+|+..|.|+.+
T Consensus 160 wde~rf~ei~~~v~~-l~k~~-------G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 160 WDEERFEEIVSEVSK-LLKMV-------GYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cCHHHHHHHHHHHHH-HHHHc-------CCCccCCeEEecccccCCcccc
Confidence 2222 23333332 11110 0011347899999999999865
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-15 Score=123.00 Aligned_cols=112 Identities=17% Similarity=0.051 Sum_probs=80.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCccc-------------------cCCCCCcceeEEEeCCeEEEEEEcCChhhhH
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD--ERLVQ-------------------HQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~--~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (193)
--+|+++|.+++|||||++++.. +.... ...|.......+.+++..+.++||||+..+.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~ 89 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT 89 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH
Confidence 34999999999999999999963 11000 0113334455677889999999999998887
Q ss_pred HhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
......+..+|++++|+|+..+-..+. ...+..+ .. .++|+++++||+|+...
T Consensus 90 ~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~-~~---~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 90 IEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQA-DK---YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence 666777889999999999987632222 2223333 22 47899999999998743
|
|
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-15 Score=114.91 Aligned_cols=169 Identities=17% Similarity=0.178 Sum_probs=109.5
Q ss_pred HHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhh---------
Q 029453 11 LVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMA--------- 77 (193)
Q Consensus 11 ~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~--------- 77 (193)
+......+..++|+++|+||+|||||+|.+.+.+..-..| |++.....+++++.++.+.||.|..+.
T Consensus 259 ~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~g 338 (531)
T KOG1191|consen 259 ADEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALG 338 (531)
T ss_pred hhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHh
Confidence 3444556678999999999999999999999988664333 666777888899999999999995541
Q ss_pred HHhHHhhhccCCEEEEEEeCCC--hhhHHHHHHHHHHHHh-----CCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCc
Q 029453 78 RRVWKDYYAKVDAVVYLIDAYD--KERFSESKRELDALLS-----DEALADVPFLILGNKIDIPYAASEDELRYHMGLTN 150 (193)
Q Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~--~~~~~~~~~~~~~~~~-----~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~ 150 (193)
-..-.+.+..+|++++|+|+.. .++-......+...-. .......|++++.||.|+....+.... .+.
T Consensus 339 I~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~-----~~~ 413 (531)
T KOG1191|consen 339 IERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK-----IPV 413 (531)
T ss_pred HHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccC-----Cce
Confidence 0111234678999999999943 2211222222222211 012234789999999999754222110 000
Q ss_pred -cccCCCcccCCCCCCcc-EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 151 -FTTGKGNVNLDNTNVRP-LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 151 -~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+..+. .... ..+..+|+++++|++.+.+.|.+.+
T Consensus 414 ~~~~~~--------~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 414 VYPSAE--------GRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred eccccc--------cCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 00000 0112 3455699999999999999887643
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-14 Score=107.82 Aligned_cols=81 Identities=22% Similarity=0.372 Sum_probs=63.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhH-------HhHHhhhccCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMAR-------RVWKDYYAKVD 89 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d 89 (193)
..+++++|+|++|||||++.+.+.+.. ..++ |..+....+.+.+..+.+.|+||.-... .......++||
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD 142 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD 142 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence 358999999999999999999987754 2333 6677888999999999999999843221 12234467899
Q ss_pred EEEEEEeCCCh
Q 029453 90 AVVYLIDAYDK 100 (193)
Q Consensus 90 ~ii~v~d~~~~ 100 (193)
.+++|+|+...
T Consensus 143 lIiiVld~~~~ 153 (365)
T COG1163 143 LIIIVLDVFED 153 (365)
T ss_pred EEEEEEecCCC
Confidence 99999999754
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=97.23 Aligned_cols=138 Identities=19% Similarity=0.219 Sum_probs=94.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCCh----hhhHHhHHhhhccCCEEEEEEe
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGH----QMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~----~~~~~~~~~~~~~~d~ii~v~d 96 (193)
.|++++|..|||||||.+.+-+... ....+..++++.. -.+||||. ..+..........+|++++|-.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~------lykKTQAve~~d~--~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT------LYKKTQAVEFNDK--GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh------hhcccceeeccCc--cccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 4899999999999999999987552 2223334444321 25799994 3444444445678999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
++++++ .+...+..+ ...|+|=|++|.|+..+.+.+..+..+... ...++|.+|+.
T Consensus 74 and~~s--~f~p~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~ea----------------Ga~~IF~~s~~ 129 (148)
T COG4917 74 ANDPES--RFPPGFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREA----------------GAEPIFETSAV 129 (148)
T ss_pred ccCccc--cCCcccccc------cccceEEEEecccccchHhHHHHHHHHHHc----------------CCcceEEEecc
Confidence 998753 333333333 356799999999998544443333222211 23479999999
Q ss_pred cCCChhHHHHhhhh
Q 029453 177 RKMGYGEGFKWLSQ 190 (193)
Q Consensus 177 ~~~gi~~~~~~i~~ 190 (193)
++.|++++++.|..
T Consensus 130 d~~gv~~l~~~L~~ 143 (148)
T COG4917 130 DNQGVEELVDYLAS 143 (148)
T ss_pred CcccHHHHHHHHHh
Confidence 99999999998854
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-14 Score=114.14 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=72.1
Q ss_pred eEEEEEEcCChhh-----hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC
Q 029453 64 IKFKAFDLGGHQM-----ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS 138 (193)
Q Consensus 64 ~~~~~~D~~g~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~ 138 (193)
..+.++||||... ........+..+|+++||+|+.+.-+.. ...+...+...+ .+.|+++|+||+|+.....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~--DeeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSIS--DEEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChh--HHHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 4678999999543 2334455788999999999998742222 223333333321 1359999999999863222
Q ss_pred --HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 139 --EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
.+.+........ .. .......++++||+.|.|++++++.|.+
T Consensus 307 ddkE~Lle~V~~~L-~q---------~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTL-MK---------GCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHH-Hh---------cCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 334333322110 00 0013458999999999999999999876
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=111.23 Aligned_cols=132 Identities=16% Similarity=0.288 Sum_probs=96.0
Q ss_pred CcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhCCCCCCC
Q 029453 53 YPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDK----------ERFSESKRELDALLSDEALADV 122 (193)
Q Consensus 53 ~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 122 (193)
+.....+.+++..+.+||++|+...+..|.+++.+++++++|+|.++- ..+.+....+..+++.....+.
T Consensus 150 Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~ 229 (317)
T cd00066 150 GIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANT 229 (317)
T ss_pred CeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCC
Confidence 445556677889999999999999999999999999999999999863 5678888888888887776889
Q ss_pred cEEEEeeCCCCCCC------------------CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHH
Q 029453 123 PFLILGNKIDIPYA------------------ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184 (193)
Q Consensus 123 pviiv~nK~Dl~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 184 (193)
|+++++||.|+... ...++....+...+... .....+.+-+..++|.+-.+++.+
T Consensus 230 pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~-------~~~~~~~~~~~~t~a~Dt~~i~~v 302 (317)
T cd00066 230 SIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDL-------NRNPNKEIYPHFTCATDTENIRFV 302 (317)
T ss_pred CEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHh-------hcCCCCeEEEEeccccchHHHHHH
Confidence 99999999996411 11112111111111110 011124567788899999999999
Q ss_pred HHhhhhh
Q 029453 185 FKWLSQY 191 (193)
Q Consensus 185 ~~~i~~~ 191 (193)
|+.+.+.
T Consensus 303 f~~v~~~ 309 (317)
T cd00066 303 FDAVKDI 309 (317)
T ss_pred HHHHHHH
Confidence 9887654
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-15 Score=109.60 Aligned_cols=128 Identities=19% Similarity=0.155 Sum_probs=73.8
Q ss_pred eEEEEEEcCChhhhH---HhHHh---hhcc--CCEEEEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 64 IKFKAFDLGGHQMAR---RVWKD---YYAK--VDAVVYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~---~~~~~---~~~~--~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.++.+||+||+.+.. ..++. .+.. .+++++|+|+....+..... .++..... ....++|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~-~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSV-QLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHH-HHHcCCCEEEEEEhHhhc
Confidence 478999999976642 22222 2333 89999999997643332222 11111111 011479999999999998
Q ss_pred CCCCHHHHHHhhCCCcc-----ccCCCc-----ccCC---CCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 135 YAASEDELRYHMGLTNF-----TTGKGN-----VNLD---NTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 135 ~~~~~~~~~~~~~~~~~-----~~~~~~-----~~~~---~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....++....+..... ...... .++. .......+++++|++++.|+++++++|.+.+
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 66555554444432000 000000 0000 0001224789999999999999999998765
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-14 Score=109.28 Aligned_cols=133 Identities=15% Similarity=0.287 Sum_probs=95.5
Q ss_pred CcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhCCCCCCC
Q 029453 53 YPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD----------KERFSESKRELDALLSDEALADV 122 (193)
Q Consensus 53 ~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 122 (193)
+.....+.+++..+.+||.+|+...+..|.++++++++++||+|.++ ...+.+....+..+++.....+.
T Consensus 173 Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~ 252 (342)
T smart00275 173 GIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANT 252 (342)
T ss_pred ceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCC
Confidence 44455666778899999999999999999999999999999999996 34678888899999887777889
Q ss_pred cEEEEeeCCCCCC----CC-------------CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHH
Q 029453 123 PFLILGNKIDIPY----AA-------------SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGF 185 (193)
Q Consensus 123 pviiv~nK~Dl~~----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 185 (193)
|+++++||.|+.. .. ..++....+...+..... ....+.+-++.++|.+-.++..+|
T Consensus 253 piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~------~~~~r~~y~h~t~a~Dt~~~~~v~ 326 (342)
T smart00275 253 SIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNR------NSSRKSIYHHFTCATDTRNIRVVF 326 (342)
T ss_pred cEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhcc------CCCCceEEEEEeeecccHHHHHHH
Confidence 9999999999741 11 111111111111110000 001245677888899999999999
Q ss_pred Hhhhhh
Q 029453 186 KWLSQY 191 (193)
Q Consensus 186 ~~i~~~ 191 (193)
+.+.+.
T Consensus 327 ~~v~~~ 332 (342)
T smart00275 327 DAVKDI 332 (342)
T ss_pred HHHHHH
Confidence 876543
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=123.18 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=93.1
Q ss_pred CCHHHHHHHHhcCCccccCC---CCCcceeEEEeCC------------------eEEEEEEcCChhhhHHhHHhhhccCC
Q 029453 31 SGKTTLLHMLKDERLVQHQP---TQYPTSEELSIGK------------------IKFKAFDLGGHQMARRVWKDYYAKVD 89 (193)
Q Consensus 31 ~GKssl~~~l~~~~~~~~~~---t~~~~~~~~~~~~------------------~~~~~~D~~g~~~~~~~~~~~~~~~d 89 (193)
++||||+..+.+......+. |.......+..+. ..+.+||||||+.+..+.......+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999998777654332 3333222333221 13799999999999887777788899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--------------HHHHHHhhCCC------
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS--------------EDELRYHMGLT------ 149 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--------------~~~~~~~~~~~------ 149 (193)
++++|+|++++- ..........+.. .++|+++++||+|+.+... .+....++...
T Consensus 552 ivlLVVDa~~Gi--~~qT~e~I~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~ 626 (1049)
T PRK14845 552 LAVLVVDINEGF--KPQTIEAINILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIG 626 (1049)
T ss_pred EEEEEEECcccC--CHhHHHHHHHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 999999998741 1111111122222 3689999999999964221 01111111100
Q ss_pred -ccccCCCcc--cCCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 150 -NFTTGKGNV--NLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 150 -~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
..+.+...+ .....+....+++++||++|+|++++.++|..
T Consensus 627 ~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 627 KLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 000000000 00012345689999999999999999998853
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-14 Score=117.53 Aligned_cols=106 Identities=19% Similarity=0.096 Sum_probs=76.2
Q ss_pred EcCCCCCHHHHHHHHhcCCcc--c-------------------cCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhh
Q 029453 26 LGLDNSGKTTLLHMLKDERLV--Q-------------------HQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDY 84 (193)
Q Consensus 26 ~G~~~~GKssl~~~l~~~~~~--~-------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 84 (193)
+|++|+|||||++++....-. . ...|.......+.+.+..+.+|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999432210 0 0112333445677889999999999999887777788
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
+..+|++++|+|+++....+.. ..+..+. . .++|+++++||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~-~---~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAE-K---YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHH-H---cCCCEEEEEECCCCCCC
Confidence 8999999999999886433322 2233332 2 47899999999998743
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-15 Score=108.84 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=60.4
Q ss_pred EEEEEEcCChhhhHHhHHhhh--------ccCCEEEEEEeCCChhh---HHH-HHHHHHHHHhCCCCCCCcEEEEeeCCC
Q 029453 65 KFKAFDLGGHQMARRVWKDYY--------AKVDAVVYLIDAYDKER---FSE-SKRELDALLSDEALADVPFLILGNKID 132 (193)
Q Consensus 65 ~~~~~D~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~~---~~~-~~~~~~~~~~~~~~~~~pviiv~nK~D 132 (193)
.+.++|||||.++...+...- ...-++++++|+....+ +-. ...-+...++ .+.|.+.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence 799999999988765554432 34568999999974332 322 1222222222 3799999999999
Q ss_pred CCCCCCHHH-HHHhhCCCc--------ccc-CCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 133 IPYAASEDE-LRYHMGLTN--------FTT-GKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 133 l~~~~~~~~-~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+.... .+. +........ ... ......+-..+.....++++|+.+++|+++++..|.+++
T Consensus 168 l~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 97532 211 111110000 000 000000011122234899999999999999999998754
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=107.03 Aligned_cols=78 Identities=23% Similarity=0.279 Sum_probs=54.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCC--CCCcceeEEEe------------------------CCeEEEEEEcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQP--TQYPTSEELSI------------------------GKIKFKAFDLGG 73 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~------------------------~~~~~~~~D~~g 73 (193)
++|+++|.||||||||+|++.+..... .++ |..++...... ....+.+||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876542 222 43444433221 125688999999
Q ss_pred hh----hhHH---hHHhhhccCCEEEEEEeCC
Q 029453 74 HQ----MARR---VWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 74 ~~----~~~~---~~~~~~~~~d~ii~v~d~~ 98 (193)
.. +... .+...++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 2222 2333478999999999996
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-15 Score=107.38 Aligned_cols=176 Identities=20% Similarity=0.223 Sum_probs=104.0
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc----cc----------CC---------CC-----------CcceeEE
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLV----QH----------QP---------TQ-----------YPTSEEL 59 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~----~~----------~~---------t~-----------~~~~~~~ 59 (193)
.+..+++.-|.++|.+|||||||+++|...-.. .+ .| |. +|+-...
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 345678889999999999999999998522111 00 00 00 1111100
Q ss_pred -------------------EeCCeEEEEEEcCChhhhHHhH-------Hh-hhccCCEEEEEEeCCC---hhhHHHHHHH
Q 029453 60 -------------------SIGKIKFKAFDLGGHQMARRVW-------KD-YYAKVDAVVYLIDAYD---KERFSESKRE 109 (193)
Q Consensus 60 -------------------~~~~~~~~~~D~~g~~~~~~~~-------~~-~~~~~d~ii~v~d~~~---~~~~~~~~~~ 109 (193)
......+.++|||||-+...+- .. .-....+++|++|... +.+|......
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 0023568899999986432111 11 1124678999999854 5555555555
Q ss_pred HHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCc----------ccc-CCCcccCCCCCCccEEEEEEeeecC
Q 029453 110 LDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTN----------FTT-GKGNVNLDNTNVRPLEVFMCSIVRK 178 (193)
Q Consensus 110 ~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~ 178 (193)
-..++.. ...|.+++.||+|+....-..+|...+.... +.. .....-.-..+.+....+.+||.+|
T Consensus 173 AcSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG 249 (366)
T KOG1532|consen 173 ACSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG 249 (366)
T ss_pred HHHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence 5555544 6899999999999975433333333222111 000 0000000122335578999999999
Q ss_pred CChhHHHHhhhhhc
Q 029453 179 MGYGEGFKWLSQYI 192 (193)
Q Consensus 179 ~gi~~~~~~i~~~l 192 (193)
.|.+++|..+.+.+
T Consensus 250 ~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 250 EGFDDFFTAVDESV 263 (366)
T ss_pred CcHHHHHHHHHHHH
Confidence 99999999987643
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=100.31 Aligned_cols=146 Identities=16% Similarity=0.079 Sum_probs=87.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
...+...|+++|++|+|||||++.+.+..... .....+. .......+..+.++||||.- ... ....+.+|++++|
T Consensus 35 ~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllv 110 (225)
T cd01882 35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLL 110 (225)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence 35677889999999999999999987653221 1111121 11233467788999999964 222 2345789999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcE-EEEeeCCCCCCCC-CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPF-LILGNKIDIPYAA-SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++.+.. .....+...+.. .+.|. ++|+||+|+.+.. ..++....+...+... .....++++
T Consensus 111 iDa~~~~~--~~~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~----------~~~~~ki~~ 175 (225)
T cd01882 111 IDASFGFE--METFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTE----------VYQGAKLFY 175 (225)
T ss_pred EecCcCCC--HHHHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHh----------hCCCCcEEE
Confidence 99986532 222223333332 35674 5599999986322 1223333332211100 012358999
Q ss_pred EeeecCCC
Q 029453 173 CSIVRKMG 180 (193)
Q Consensus 173 ~Sa~~~~g 180 (193)
+||++...
T Consensus 176 iSa~~~~~ 183 (225)
T cd01882 176 LSGIVHGR 183 (225)
T ss_pred EeeccCCC
Confidence 99988743
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=103.77 Aligned_cols=111 Identities=19% Similarity=0.241 Sum_probs=69.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccC-----------CCCCcce--eEEEeCC--eEEEEEEcCChhhh------
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-----------PTQYPTS--EELSIGK--IKFKAFDLGGHQMA------ 77 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~------ 77 (193)
-.++|+++|.+|+|||||+|++++....... +|..... ..+..++ ..+.+|||||....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 3689999999999999999999988765321 1221211 2233334 57999999994321
Q ss_pred ------------HHhHH--------hhhc--cCCEEEEEEeCCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 78 ------------RRVWK--------DYYA--KVDAVVYLIDAYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 78 ------------~~~~~--------~~~~--~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
..... ..+. .+|+++|+++.+... +... ...+..+. ..+|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~-----~~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS-----KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh-----ccCCEEEEEECCCcC
Confidence 00000 1111 478999999987521 2333 33333332 258999999999996
Q ss_pred C
Q 029453 135 Y 135 (193)
Q Consensus 135 ~ 135 (193)
.
T Consensus 157 ~ 157 (276)
T cd01850 157 T 157 (276)
T ss_pred C
Confidence 4
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-13 Score=104.13 Aligned_cols=108 Identities=17% Similarity=0.096 Sum_probs=68.9
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH-
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE- 141 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~- 141 (193)
+.++.++||+|...-... ....+|.++++.+...++.++.......++ .-++|+||+|+......+.
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~---------aDIiVVNKaDl~~~~~a~~~ 215 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIMEL---------ADLIVINKADGDNKTAARRA 215 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhhhh---------hheEEeehhcccchhHHHHH
Confidence 578999999997633322 355699999998755554444433222222 2389999999875433333
Q ss_pred ---HHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 142 ---LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 142 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+...+....- ....+..+++.+||+++.|+++++++|.+++
T Consensus 216 ~~el~~~L~l~~~----------~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 216 AAEYRSALRLLRP----------KDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred HHHHHHHHhcccc----------cccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3333332110 0001335799999999999999999998753
|
|
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-16 Score=107.20 Aligned_cols=158 Identities=17% Similarity=0.146 Sum_probs=117.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC---eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK---IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
.-+++.++|..|+|||+++.++....+.. +..|.+. ....+.++. ..+.+||..||+++..+..-+++.+++..
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 45799999999999999999998776653 3334432 223334433 35679999999999988888899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCCCCCCHH--HHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 93 YLIDAYDKERFSESKRELDALLSDE---ALADVPFLILGNKIDIPYAASED--ELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|+|+++.-+|+....|..++.... +....|+++..||||..+....+ ...+.+.... ..
T Consensus 104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~ken---------------gf 168 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKEN---------------GF 168 (229)
T ss_pred EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhcc---------------Cc
Confidence 9999999988999999998886543 33457889999999986433222 1222222222 34
Q ss_pred EEEEEEeeecCCChhHHHHhhhhh
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...+++|+|.+.|++|+.+.+++.
T Consensus 169 ~gwtets~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 169 EGWTETSAKENKNIPEAQRELVEK 192 (229)
T ss_pred cceeeeccccccChhHHHHHHHHH
Confidence 578999999999999999998764
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-13 Score=99.09 Aligned_cols=120 Identities=15% Similarity=0.092 Sum_probs=76.0
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCeEEEEEEcCChhhhH----------H
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQMAR----------R 79 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~ 79 (193)
..-...+++|+++|.+|+|||||+|.+++....... .|...........+..+.+|||||..... .
T Consensus 25 ~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 25 KEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHH
Confidence 344668899999999999999999999987754322 23333344445677889999999954331 0
Q ss_pred hHHhhhc--cCCEEEEEEeCCChh-hHH--HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 80 VWKDYYA--KVDAVVYLIDAYDKE-RFS--ESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 80 ~~~~~~~--~~d~ii~v~d~~~~~-~~~--~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
....+++ ..+++++|..++... ... .+.+.+...+.. .--.++++|.||+|..+
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~--~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGP--SIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCh--hhHhCEEEEEeCCccCC
Confidence 1122333 578888887665421 111 233333433221 11257999999999873
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.5e-14 Score=113.10 Aligned_cols=169 Identities=18% Similarity=0.215 Sum_probs=108.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccC---------CCCCcce------------eEEEeCCeEEEEEEcCChhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ---------PTQYPTS------------EELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~---------~t~~~~~------------~~~~~~~~~~~~~D~~g~~~ 76 (193)
-+++-+||+|+..+|||-|+..+.+....... .|+.+.. ..-++.---+.++|||||+.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 37788999999999999999998764433111 1222111 00011122467899999999
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC------CCCCH-----------
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP------YAASE----------- 139 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~------~~~~~----------- 139 (193)
|........+.||.+|+|+|+.++ +....-.-..+++. .+.|.||.+||+|.. +....
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhG--lepqtiESi~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v 627 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHG--LEPQTIESINLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV 627 (1064)
T ss_pred hhhhhhccccccceEEEEeehhcc--CCcchhHHHHHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence 999988888999999999999765 22222222233333 589999999999964 11111
Q ss_pred -HHHHHhhCCCccccCCCcccCC-----CCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 140 -DELRYHMGLTNFTTGKGNVNLD-----NTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.++...++....+.+....+.. ......+-++|+||.+|+||.+++-||++.
T Consensus 628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 2233333332222222222221 112345789999999999999999999764
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-13 Score=114.08 Aligned_cols=137 Identities=18% Similarity=0.088 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCC---------------cccc----CCCCCccee----EE
Q 029453 3 LVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDER---------------LVQH----QPTQYPTSE----EL 59 (193)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~---------------~~~~----~~t~~~~~~----~~ 59 (193)
|++++..... ..++--+|+++|+.++|||||++++.... +... ..|...... .+
T Consensus 5 ~~~~~~~~~~---~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~ 81 (720)
T TIGR00490 5 MIDKIKELMW---KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY 81 (720)
T ss_pred HHHHHHHHhh---CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee
Confidence 3444444432 33455699999999999999999986421 1110 112222111 23
Q ss_pred EeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC---C
Q 029453 60 SIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY---A 136 (193)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~---~ 136 (193)
.+.+..+.+|||||+.++.......+..+|++++|+|+.+.-..+. ...+..... .+.|.++++||+|... .
T Consensus 82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~~~~~ 156 (720)
T TIGR00490 82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLINELK 156 (720)
T ss_pred cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhcccchhc
Confidence 4567889999999999887777788899999999999987421111 222222222 3678899999999863 2
Q ss_pred CCHHHHHHhhC
Q 029453 137 ASEDELRYHMG 147 (193)
Q Consensus 137 ~~~~~~~~~~~ 147 (193)
...+++...++
T Consensus 157 ~~~~~~~~~~~ 167 (720)
T TIGR00490 157 LTPQELQERFI 167 (720)
T ss_pred CCHHHHHHHHh
Confidence 34444554443
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=102.17 Aligned_cols=161 Identities=20% Similarity=0.168 Sum_probs=100.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC--CC------------------------CcceeEEEeC------CeE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP--TQ------------------------YPTSEELSIG------KIK 65 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~--t~------------------------~~~~~~~~~~------~~~ 65 (193)
+...+|+.+|...-|||||...+++--....+. .+ ......+... -+.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 678999999999999999999997543221100 00 0000111111 157
Q ss_pred EEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHH
Q 029453 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRY 144 (193)
Q Consensus 66 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~ 144 (193)
+.++|.|||+-.-..+...-.--|++++|++++++.. +.........+... .-+.++++-||+|+...+. .++.++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcP-QPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCP-QPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCC-CCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHHH
Confidence 8899999999765544433334699999999998643 22222222222232 2356899999999974222 222222
Q ss_pred hhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 145 HMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+... ....+..+++++||..+.|++-++++|.+++
T Consensus 165 Ik~Fvk-----------Gt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 165 IKEFVK-----------GTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred HHHHhc-----------ccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 222222 1123557999999999999999999998875
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-13 Score=99.36 Aligned_cols=162 Identities=18% Similarity=0.092 Sum_probs=105.3
Q ss_pred HHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-----------ccCC-CCC---------------cce-------
Q 029453 11 LVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLV-----------QHQP-TQY---------------PTS------- 56 (193)
Q Consensus 11 ~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-----------~~~~-t~~---------------~~~------- 56 (193)
....+..-+...|+|.|.||+|||||+..|...-.. +.+| |.+ +..
T Consensus 42 ~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~s 121 (323)
T COG1703 42 RALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPS 121 (323)
T ss_pred HHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCC
Confidence 344556678889999999999999999998521100 1111 110 000
Q ss_pred -e--------------EEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCC
Q 029453 57 -E--------------ELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALAD 121 (193)
Q Consensus 57 -~--------------~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (193)
. .++-.++++.+++|.|..+..-. ..+-+|.+++|.=..-++.++....-+.++..
T Consensus 122 rG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD------ 192 (323)
T COG1703 122 RGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIAD------ 192 (323)
T ss_pred CccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhhh------
Confidence 0 01112688999999886544332 23448999999888777778888887777742
Q ss_pred CcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 122 VPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 122 ~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++|+||.|.... ....++...+..... ......+..+++.+||.+|+|++++++.|.+..
T Consensus 193 ---i~vINKaD~~~A~~a~r~l~~al~~~~~--------~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 193 ---IIVINKADRKGAEKAARELRSALDLLRE--------VWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred ---eeeEeccChhhHHHHHHHHHHHHHhhcc--------cccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 899999996422 222334444444420 011223678999999999999999999998753
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-12 Score=93.79 Aligned_cols=102 Identities=15% Similarity=0.258 Sum_probs=62.0
Q ss_pred eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHH
Q 029453 64 IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDE 141 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~ 141 (193)
.+..++++.|..-...... . -++.++.|+|+.+.+.... .....+ ...=++++||+|+.+. ...+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHHH
Confidence 4566777777321111111 1 2678999999987654321 100111 1223899999999853 33333
Q ss_pred HHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+.+...... ...+++++||++|+|++++++||.+++
T Consensus 160 ~~~~~~~~~---------------~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 160 MERDAKKMR---------------GEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHhC---------------CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 333333222 235789999999999999999998765
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-12 Score=96.40 Aligned_cols=115 Identities=13% Similarity=0.194 Sum_probs=72.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhhHH-------hHHhhh-
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMARR-------VWKDYY- 85 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~- 85 (193)
.+.++|+++|.+|+||||++|+|++........ +..+........+..+.++||||...... ....++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 478899999999999999999999877432211 22223334445788999999999553311 111112
Q ss_pred -ccCCEEEEEEeCCC--hhhH-HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 86 -AKVDAVVYLIDAYD--KERF-SESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 86 -~~~d~ii~v~d~~~--~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
...|+++||...+. .... ......+...+... --.++++++|++|..
T Consensus 116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFS 166 (313)
T ss_pred cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccC
Confidence 25899999965442 2211 22333344443211 235799999999976
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.6e-13 Score=98.86 Aligned_cols=158 Identities=18% Similarity=0.117 Sum_probs=99.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc---ccCC---CCCcc----eeEEE---------eCCeEEEEEEcCChhhhHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLV---QHQP---TQYPT----SEELS---------IGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~---~~~~---t~~~~----~~~~~---------~~~~~~~~~D~~g~~~~~~~ 80 (193)
.++++++|...||||||.+++..-... ...| +++.+ ...+. .....+.++|+|||....+.
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 489999999999999999998633211 1111 11111 11111 12357899999999877666
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHH-HHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH----HHHhhCCCccccCC
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRE-LDALLSDEALADVPFLILGNKIDIPYAASEDE----LRYHMGLTNFTTGK 155 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~ 155 (193)
....-.-.|..++|+|+..+-.-+...-. +.++ .....++|+||+|..++..... ....+....-
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe---- 156 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLE---- 156 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHH----
Confidence 65555668999999999876433333322 2222 2455788899999875533332 2222221110
Q ss_pred CcccCCCCCCccEEEEEEeeecC----CChhHHHHhhhhhc
Q 029453 156 GNVNLDNTNVRPLEVFMCSIVRK----MGYGEGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~~----~gi~~~~~~i~~~l 192 (193)
+..+....+++++||+.| +++.++.+.|.+++
T Consensus 157 -----~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 157 -----STGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred -----hcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 011235589999999999 78999998887654
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.47 E-value=9e-14 Score=100.70 Aligned_cols=154 Identities=19% Similarity=0.171 Sum_probs=94.1
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcC-----Ccc------ccCC-CC---------------CcceeEEE-------
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDE-----RLV------QHQP-TQ---------------YPTSEELS------- 60 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~-----~~~------~~~~-t~---------------~~~~~~~~------- 60 (193)
+...+.+.|+|.|+||+|||||++.+... ... +.+| |. .+. ..++
T Consensus 24 ~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~-vfIRS~atRG~ 102 (266)
T PF03308_consen 24 PHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPG-VFIRSMATRGS 102 (266)
T ss_dssp GGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTT-EEEEEE---SS
T ss_pred hhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCC-EEEeecCcCCC
Confidence 34557889999999999999999998411 100 1111 11 011 1111
Q ss_pred ----------------eCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcE
Q 029453 61 ----------------IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPF 124 (193)
Q Consensus 61 ----------------~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pv 124 (193)
..++++.+++|.|..+..- ....-+|.+++|+-..-.+.++.+..-+.++. +
T Consensus 103 lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia------D--- 170 (266)
T PF03308_consen 103 LGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA------D--- 170 (266)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------S---
T ss_pred CCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc------c---
Confidence 1268899999987543332 22455999999999988877777777777773 2
Q ss_pred EEEeeCCCCCC-CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 125 LILGNKIDIPY-AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 125 iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
++|+||+|.+. .....+++..+....- ....+..+++.+||.++.|++++++.|.++
T Consensus 171 i~vVNKaD~~gA~~~~~~l~~~l~l~~~----------~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 171 IFVVNKADRPGADRTVRDLRSMLHLLRE----------REDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp EEEEE--SHHHHHHHHHHHHHHHHHCST----------SCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred EEEEeCCChHHHHHHHHHHHHHHhhccc----------cccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 89999999652 1223344444443320 012256799999999999999999999764
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.6e-12 Score=96.71 Aligned_cols=134 Identities=18% Similarity=0.292 Sum_probs=95.6
Q ss_pred CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhCCCCC
Q 029453 51 TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD----------KERFSESKRELDALLSDEALA 120 (193)
Q Consensus 51 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 120 (193)
|.|.....+.+.+..+.++|.|||...+.-|.+++.+++++++|++.++ ...+.+....+..+.+...-.
T Consensus 182 T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~ 261 (354)
T KOG0082|consen 182 TTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA 261 (354)
T ss_pred cCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence 5566777888899999999999999999999999999999999999984 244677788888898888888
Q ss_pred CCcEEEEeeCCCCCCC-----------------CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 121 DVPFLILGNKIDIPYA-----------------ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 121 ~~pviiv~nK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
+.++++.+||.|+..+ ...++........+ +... .......-+..+.|.+-.+|+.
T Consensus 262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF-~~l~------~~~~k~iy~h~T~AtDT~nv~~ 334 (354)
T KOG0082|consen 262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKF-EELN------KNKDKKIYVHFTCATDTQNVQF 334 (354)
T ss_pred cCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHH-HHHh------cccCCcceEEEEeeccHHHHHH
Confidence 9999999999998411 11111111111111 1100 0011334556668888889999
Q ss_pred HHHhhhhh
Q 029453 184 GFKWLSQY 191 (193)
Q Consensus 184 ~~~~i~~~ 191 (193)
+|....+.
T Consensus 335 vf~av~d~ 342 (354)
T KOG0082|consen 335 VFDAVTDT 342 (354)
T ss_pred HHHHHHHH
Confidence 99887654
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=110.41 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=78.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc------------c---CC----CCCcceeEEEeC----------CeEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ------------H---QP----TQYPTSEELSIG----------KIKFK 67 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~------------~---~~----t~~~~~~~~~~~----------~~~~~ 67 (193)
.++--+|+++|+.++|||||++++....-.. . +. |.......+.+. +..+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 4455599999999999999999997532110 0 00 111111233333 46789
Q ss_pred EEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 68 AFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 68 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
++||||+.++.......+..+|++|+|+|+.++-..+ ....+..+.. .++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 9999999998887788889999999999998752222 2233333332 368999999999986
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=100.83 Aligned_cols=154 Identities=17% Similarity=0.009 Sum_probs=110.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--cC----CCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ--HQ----PTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~--~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
-|+..|+-.-|||||+..+.+..... .. .|.+........++....++|.|||+++-..+...+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 47788999999999999998776542 11 1444455666667789999999999999988888888999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|+++. +.........++... .....++|+||+|.......++..+..-... .....+++.+|+
T Consensus 82 ~~deG--l~~qtgEhL~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l-------------~l~~~~i~~~s~ 144 (447)
T COG3276 82 AADEG--LMAQTGEHLLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADL-------------SLANAKIFKTSA 144 (447)
T ss_pred eCccC--cchhhHHHHHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhc-------------cccccccccccc
Confidence 99765 333333344444432 2344699999999985544444333322211 024567899999
Q ss_pred ecCCChhHHHHhhhhhc
Q 029453 176 VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~l 192 (193)
++|.|++++.+.|.+..
T Consensus 145 ~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 145 KTGRGIEELKNELIDLL 161 (447)
T ss_pred ccCCCHHHHHHHHHHhh
Confidence 99999999999998754
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=110.08 Aligned_cols=114 Identities=17% Similarity=0.098 Sum_probs=79.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc--c----------c-------CCCCCcceeEEEe---------------
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV--Q----------H-------QPTQYPTSEELSI--------------- 61 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~----------~-------~~t~~~~~~~~~~--------------- 61 (193)
..++--+|+++|+.++|||||++++....-. . . ..|.......+.+
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 4555669999999999999999998643311 0 0 0011111222333
Q ss_pred -CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 62 -GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 62 -~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.+..+.++|||||..|.......+..+|++|+|+|+.++-..+. ...+..... .++|+++++||+|+.
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 25678999999999998888888899999999999987632222 223333332 478999999999987
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=101.38 Aligned_cols=159 Identities=18% Similarity=0.215 Sum_probs=105.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--ccccCC-------------CCCc----ceeEEEeCCeEEEEEEcCChhhhHHhHH
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER--LVQHQP-------------TQYP----TSEELSIGKIKFKAFDLGGHQMARRVWK 82 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~--~~~~~~-------------t~~~----~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (193)
+|+|+.+..-|||||+..+.... +..... ..+. .-..+.+++..+.++|||||..|....+
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 79999999999999999987433 221111 1111 1224567889999999999999998888
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCC
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
..++=+|++++++|+.++. +-.-.-.+...+. .+.+.|+|+||+|.+.+...+-+.+.+.+.. +-+...+.
T Consensus 87 Rvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~-~L~A~deQ--- 157 (603)
T COG1217 87 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFV-ELGATDEQ--- 157 (603)
T ss_pred hhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHH-HhCCChhh---
Confidence 8899999999999998753 1122223333333 3777899999999975444333333332221 11111111
Q ss_pred CCCccEEEEEEeeecCC----------ChhHHHHhhhhhc
Q 029453 163 TNVRPLEVFMCSIVRKM----------GYGEGFKWLSQYI 192 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~----------gi~~~~~~i~~~l 192 (193)
-..+++..|+..|. ++.-+|+.|.+.+
T Consensus 158 ---LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 158 ---LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred ---CCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 34689999988775 6777888877654
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.8e-12 Score=96.68 Aligned_cols=85 Identities=21% Similarity=0.342 Sum_probs=60.5
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCC-----------------eEEEEEEcCC
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGK-----------------IKFKAFDLGG 73 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g 73 (193)
...-...++|+++|.||||||||+|.+.+.... ...| |..++...+.+.+ ..+.++|+||
T Consensus 15 ~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpG 94 (390)
T PTZ00258 15 LGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAG 94 (390)
T ss_pred hccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCC
Confidence 334467789999999999999999999776643 2233 5566766665542 3489999999
Q ss_pred hhh-------hHHhHHhhhccCCEEEEEEeCC
Q 029453 74 HQM-------ARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 74 ~~~-------~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
... ........++++|++++|+|..
T Consensus 95 Lv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 95 LVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 432 1223334567899999999983
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=97.73 Aligned_cols=151 Identities=17% Similarity=0.084 Sum_probs=98.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc----------C---C-----------------------CCCcceeEEEe
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH----------Q---P-----------------------TQYPTSEELSI 61 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~----------~---~-----------------------t~~~~~~~~~~ 61 (193)
+..+|++..|...=|||||+-+|..+...-. + . |.+.....+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4567999999999999999999975542210 0 0 11112223344
Q ss_pred CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCH
Q 029453 62 GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASE 139 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~ 139 (193)
.++.|.+-|||||++|.+-+...-+.||++|+++|+..+ +.+.......+.... .-..+++..||+||.. +..-
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHHH
Confidence 678999999999999999888888899999999999654 444444444443332 2356889999999983 2222
Q ss_pred HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChh
Q 029453 140 DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYG 182 (193)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 182 (193)
+++...+.... . +-......++|+||..|.|+-
T Consensus 160 ~~I~~dy~~fa--~--------~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFA--A--------QLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHH--H--------HcCCCcceEEechhccCCccc
Confidence 23222222111 0 001133589999999999875
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.8e-12 Score=90.06 Aligned_cols=119 Identities=17% Similarity=0.080 Sum_probs=74.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccC-----CCCCcceeEEEeCCeEEEEEEcCChh-------hhHHhH----Hhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQ-----PTQYPTSEELSIGKIKFKAFDLGGHQ-------MARRVW----KDY 84 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~-----~t~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~~----~~~ 84 (193)
.+|+++|.+||||||++|.+++....... .|...........+..+.++||||.. +..... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 48999999999999999999988865332 25556666678899999999999922 111111 122
Q ss_pred hccCCEEEEEEeCCChh-hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 029453 85 YAKVDAVVYLIDAYDKE-RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE 141 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~ 141 (193)
....+++++|++..... .-......+..++... .-..++||+|..|.......++
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~ 136 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDSLED 136 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHH
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH--HHhHhhHHhhhccccccccHHH
Confidence 34689999999998431 1123334455554321 1256899999999876555444
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-12 Score=100.07 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=103.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhh----H-----HhHHhh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMA----R-----RVWKDY 84 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~----~-----~~~~~~ 84 (193)
.-+.-.+++.|.|++|||||+|.+...... ..++ |...-.+.+.+.-..+..+||||.-.. . ....+.
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 346678999999999999999998766644 3333 333344556666678889999993211 0 011122
Q ss_pred hccCCEEEEEEeCCC--hhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCC
Q 029453 85 YAKVDAVVYLIDAYD--KERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
-+-..+++|++|.+. +.++......+.++--.+ .++|+|+|+||+|..+.....+-.+.+-.....
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~---------- 312 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKIDAMRPEDLDQKNQELLQTIID---------- 312 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeecccccCccccCHHHHHHHHHHHh----------
Confidence 244678999999986 345555556666553222 689999999999998555544422222111100
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
....+++.+|..+.+|+.++...-++
T Consensus 313 --~~~v~v~~tS~~~eegVm~Vrt~ACe 338 (620)
T KOG1490|consen 313 --DGNVKVVQTSCVQEEGVMDVRTTACE 338 (620)
T ss_pred --ccCceEEEecccchhceeeHHHHHHH
Confidence 12368999999999999988765443
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.4e-13 Score=95.39 Aligned_cols=148 Identities=18% Similarity=0.202 Sum_probs=82.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--c-----cCC--CC--------CcceeEEE--------------------e
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--Q-----HQP--TQ--------YPTSEELS--------------------I 61 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~-----~~~--t~--------~~~~~~~~--------------------~ 61 (193)
.-..|+|+|+.|||||||++++...... . ... .. +.....+. .
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 4678999999999999999998643110 0 000 00 00000000 0
Q ss_pred CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CH
Q 029453 62 GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SE 139 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~ 139 (193)
.+..+.++++.|.-.... .+--..+..+.|+|+.+.+... .. .... ...|.++++||+|+.... ..
T Consensus 101 ~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~-~~~~------~~~a~iiv~NK~Dl~~~~~~~~ 168 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LK-YPGM------FKEADLIVINKADLAEAVGFDV 168 (207)
T ss_pred CCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hh-hHhH------HhhCCEEEEEHHHccccchhhH
Confidence 134566667766210000 0111234555677776543211 11 1111 246789999999997432 23
Q ss_pred HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 140 DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
.++...+.... +..+++++||++|.|++++++|+.++.+
T Consensus 169 ~~~~~~l~~~~---------------~~~~i~~~Sa~~g~gv~~l~~~i~~~~~ 207 (207)
T TIGR00073 169 EKMKADAKKIN---------------PEAEIILMSLKTGEGLDEWLEFLEGQVK 207 (207)
T ss_pred HHHHHHHHHhC---------------CCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 33333332211 2357999999999999999999988653
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-12 Score=100.62 Aligned_cols=159 Identities=16% Similarity=0.072 Sum_probs=100.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCc--------------------c-c---------cCC----CCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERL--------------------V-Q---------HQP----TQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~--------------------~-~---------~~~----t~~~~~~~~~~~ 62 (193)
.+..+.++++|..++|||||+.+++.+-- . . .+. |.......++-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 44678999999999999999999852210 0 0 000 112223334445
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh---h--HHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE---R--FSESKRELDALLSDEALADVPFLILGNKIDIPYAA 137 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~ 137 (193)
...++++|+|||..|..-+......+|++++|+|++..+ . ..+....+..+++..+ -..+++++||+|+....
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWS 331 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCcc
Confidence 578999999999999887777778899999999998531 1 2334556666665543 35689999999997322
Q ss_pred C--HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHH
Q 029453 138 S--EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184 (193)
Q Consensus 138 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 184 (193)
. .+++...++-..-+.. ...-..+.++|||+.+|+|+-..
T Consensus 332 q~RF~eIk~~l~~fL~~~~-------gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESC-------GFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHHHHhc-------CcccCCcceEecccccCCccccc
Confidence 2 2233333221110000 00013468999999999987543
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-11 Score=92.59 Aligned_cols=109 Identities=15% Similarity=0.064 Sum_probs=65.4
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHH
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDEL 142 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~ 142 (193)
+.++.++||+|..... ....+.+|.++++.+.... .++......+ ..+|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHHHHH
Confidence 5788999999854222 1245668888888654333 2333333333 35778999999999754332222
Q ss_pred HHhh--CCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 143 RYHM--GLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 143 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...+ ....+.. ....+..+++++||+++.|+++++++|.+.
T Consensus 194 ~~~~~~~l~~l~~--------~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 194 RLMLALALEEIRR--------REDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred HHHHHHHHhhccc--------cccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 2111 1111000 000122368999999999999999999764
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=104.35 Aligned_cols=113 Identities=19% Similarity=0.112 Sum_probs=76.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc--c----------cCC-------CCCcceeEEEe----CCeEEEEEEcCC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV--Q----------HQP-------TQYPTSEELSI----GKIKFKAFDLGG 73 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~----------~~~-------t~~~~~~~~~~----~~~~~~~~D~~g 73 (193)
.++--+|+++|+.++|||||++++....-. . ..+ |.......+.+ .+..+.++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 344457999999999999999998643211 0 000 11112222222 357789999999
Q ss_pred hhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
+.++.......+..+|++++|+|+..+-..+ ....+..... .+.|.++++||+|+.
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH----cCCCeEEEEECchhh
Confidence 9998887888889999999999998752222 2223333222 256789999999976
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.2e-11 Score=82.18 Aligned_cols=64 Identities=20% Similarity=0.287 Sum_probs=42.8
Q ss_pred eEEEEEEcCChh----hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCC
Q 029453 64 IKFKAFDLGGHQ----MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKI 131 (193)
Q Consensus 64 ~~~~~~D~~g~~----~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~ 131 (193)
..+.++||||.. ........+++.+|++++|.+++...+-... ..+...... ....+++|.||.
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcC---CCCeEEEEEcCC
Confidence 458899999953 2235667788999999999999986443333 333333333 244589999984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-11 Score=89.64 Aligned_cols=149 Identities=19% Similarity=0.179 Sum_probs=95.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc---CCCCCcceeEEEeCC-eEEEEEEcCChh---------hhHHhHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH---QPTQYPTSEELSIGK-IKFKAFDLGGHQ---------MARRVWKD 83 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~~~-~~~~~~D~~g~~---------~~~~~~~~ 83 (193)
......|+++|-.|||||||++++..-..... -.|-+++......++ ..+.+.||.|.- .|.... .
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATL-e 253 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATL-E 253 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHH-H
Confidence 45678999999999999999999984332222 225566665555543 456677999832 223322 3
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc----EEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCccc
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP----FLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVN 159 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p----viiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (193)
.+..+|.++.|+|+++|.- +.........++....+..| ++-|-||+|..+.....
T Consensus 254 eVaeadlllHvvDiShP~a-e~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~------------------- 313 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNA-EEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE------------------- 313 (410)
T ss_pred HHhhcceEEEEeecCCccH-HHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-------------------
Confidence 3567999999999999863 33333333333443333333 55666888865433321
Q ss_pred CCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 160 LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+.-..+.+|+.+|+|++++.+.+...+
T Consensus 314 ------E~n~~v~isaltgdgl~el~~a~~~kv 340 (410)
T KOG0410|consen 314 ------EKNLDVGISALTGDGLEELLKAEETKV 340 (410)
T ss_pred ------ccCCccccccccCccHHHHHHHHHHHh
Confidence 111268899999999999999886543
|
|
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-11 Score=86.55 Aligned_cols=121 Identities=18% Similarity=0.341 Sum_probs=81.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc----ccCCCCCcceeEEEe-CCeEEEEEEcCChhhhHH-----hHHhhhccC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV----QHQPTQYPTSEELSI-GKIKFKAFDLGGHQMARR-----VWKDYYAKV 88 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~----~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~ 88 (193)
..-||.++|.+||||||+=..++.+... ...+|.+......++ ++..+.+||++|++.+-. .....+++.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 3568999999999999988777755432 222344555555554 458899999999985533 223467889
Q ss_pred CEEEEEEeCCChhhHHH---HHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 029453 89 DAVVYLIDAYDKERFSE---SKRELDALLSDEALADVPFLILGNKIDIPYAASEDE 141 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~ 141 (193)
+++++|+|+...+-... ..+-+..++ .+-+...+...++|+|+......++
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll--~~SP~AkiF~l~hKmDLv~~d~r~~ 136 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALL--QNSPEAKIFCLLHKMDLVQEDAREL 136 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHH--hcCCcceEEEEEeechhcccchHHH
Confidence 99999999987542222 222333333 2336788999999999985544443
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=94.39 Aligned_cols=117 Identities=16% Similarity=0.086 Sum_probs=72.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccC----CCCCcceeEEEeCCeEEEEEEcCChhhh----------HHhHHhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQ----PTQYPTSEELSIGKIKFKAFDLGGHQMA----------RRVWKDY 84 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~~~ 84 (193)
...+|+++|.+|+||||++|.+++....... .|...........+..+.++||||.... ......+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 4568999999999999999999987644322 1322223333456788999999995421 1112223
Q ss_pred hc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCC-CCCcEEEEeeCCCCCC
Q 029453 85 YA--KVDAVVYLIDAYDKERFSESKRELDALLSDEAL-ADVPFLILGNKIDIPY 135 (193)
Q Consensus 85 ~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~pviiv~nK~Dl~~ 135 (193)
+. .+|++++|...+......+....+..+...++. --..+|||+|+.|..+
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 33 479999998775332211222333333222221 1256899999999875
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-11 Score=92.47 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=80.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc--c---c---CCCCCcceeEEEeCC-eEEEEEEcCChhhhHHhHHh----
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV--Q---H---QPTQYPTSEELSIGK-IKFKAFDLGGHQMARRVWKD---- 83 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~---~---~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~---- 83 (193)
.+..++|+|+|.+|+|||||+|.+.|-... . + +.|..+. .....+ -.+.+||+||..........
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~--~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~ 109 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPT--PYPHPKFPNVTLWDLPGIGTPNFPPEEYLKE 109 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-E--EEE-SS-TTEEEEEE--GGGSS--HHHHHHH
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCe--eCCCCCCCCCeEEeCCCCCCCCCCHHHHHHH
Confidence 346789999999999999999999653221 1 1 1122222 223333 35889999996533222222
Q ss_pred -hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC---------CCCCHHHHHHhhCCCcccc
Q 029453 84 -YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP---------YAASEDELRYHMGLTNFTT 153 (193)
Q Consensus 84 -~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~---------~~~~~~~~~~~~~~~~~~~ 153 (193)
.+...|.+|++.+- .|...+.++..-... .++|+.+|-||+|.. +.-..+++.+.......+.
T Consensus 110 ~~~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~ 182 (376)
T PF05049_consen 110 VKFYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLEN 182 (376)
T ss_dssp TTGGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHH
T ss_pred ccccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHH
Confidence 34578988887663 256666555555544 489999999999962 1222223333322222111
Q ss_pred CCCcccCCCCCCccEEEEEEeeecC--CChhHHHHhhhh
Q 029453 154 GKGNVNLDNTNVRPLEVFMCSIVRK--MGYGEGFKWLSQ 190 (193)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~Sa~~~--~gi~~~~~~i~~ 190 (193)
.........++|.+|+.+- +....+.+.|..
T Consensus 183 ------L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~ 215 (376)
T PF05049_consen 183 ------LQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEK 215 (376)
T ss_dssp ------HHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHH
T ss_pred ------HHHcCCCcCceEEEeCCCcccCChHHHHHHHHH
Confidence 0111234568999997543 456667666654
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=96.77 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=88.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-----ccC------------C----CCCcceeEEEeCC-eEEEEEEcCCh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-----QHQ------------P----TQYPTSEELSIGK-IKFKAFDLGGH 74 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-----~~~------------~----t~~~~~~~~~~~~-~~~~~~D~~g~ 74 (193)
.++--+|+++|+.++||||+..++....-. ... . |.......+.+.+ ..+.++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 345558999999999999999998532211 110 0 2222334566774 99999999999
Q ss_pred hhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC---CCCHHHHHHhhCC
Q 029453 75 QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY---AASEDELRYHMGL 148 (193)
Q Consensus 75 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~---~~~~~~~~~~~~~ 148 (193)
-+|.......+.-+|+++.|+|+...-..+. ...|+...+ .++|.++++||+|... ....+++...+..
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QT-Etv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~ 158 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLKERLGA 158 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecH-HHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHHHHhCC
Confidence 9999988888999999999999987632222 222333322 5899999999999862 3344456655554
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-11 Score=92.29 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=40.7
Q ss_pred CCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 121 DVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 121 ~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
..+-++|+||+|+.+.. ..+++...+.... ...+++++||++|+|++++.+||.++
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~ln---------------p~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVN---------------PEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhC---------------CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35669999999997532 3334444443332 34689999999999999999999875
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=85.54 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=98.9
Q ss_pred HhCCCCcccEEEEEcCCCCCHHHHHHHHhcC-------Cccc--------cCCCCC--ccee--EEEeCCeEEEEEEcCC
Q 029453 13 SLGLWQKEAKILFLGLDNSGKTTLLHMLKDE-------RLVQ--------HQPTQY--PTSE--ELSIGKIKFKAFDLGG 73 (193)
Q Consensus 13 ~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~-------~~~~--------~~~t~~--~~~~--~~~~~~~~~~~~D~~g 73 (193)
+....+...+|+.+|..+-|||||...+... .+.. .+...+ .+.. ..+-.++.+..+|+||
T Consensus 5 kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPG 84 (394)
T COG0050 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPG 84 (394)
T ss_pred hhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCC
Confidence 3456788999999999999999999887421 1100 111122 2223 3344678899999999
Q ss_pred hhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCCHHH--------HHH
Q 029453 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAASEDE--------LRY 144 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~~~~--------~~~ 144 (193)
|..|-..+...--+.|..|+|+.+++.. .........+.++ .+.| +++++||+|+..+...-+ +..
T Consensus 85 HaDYvKNMItgAaqmDgAILVVsA~dGp--mPqTrEHiLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs 159 (394)
T COG0050 85 HADYVKNMITGAAQMDGAILVVAATDGP--MPQTREHILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred hHHHHHHHhhhHHhcCccEEEEEcCCCC--CCcchhhhhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHH
Confidence 9988776666566789999999999852 1122222223233 3554 667779999985433322 333
Q ss_pred hhCCCccccCCCcccCCCCCCccEEEEEEeeecC--------CChhHHHHhhhhhc
Q 029453 145 HMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRK--------MGYGEGFKWLSQYI 192 (193)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--------~gi~~~~~~i~~~l 192 (193)
.++.+- ...+++..||..- ..+.++++.+.+++
T Consensus 160 ~y~f~g---------------d~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 160 EYGFPG---------------DDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred HcCCCC---------------CCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence 333332 3457777776432 23567777666554
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.5e-11 Score=91.12 Aligned_cols=127 Identities=19% Similarity=0.222 Sum_probs=87.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh--cCCccc----------cCC---------CCC----cceeEEEeCCeEEEEEEcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK--DERLVQ----------HQP---------TQY----PTSEELSIGKIKFKAFDLGG 73 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~--~~~~~~----------~~~---------t~~----~~~~~~~~~~~~~~~~D~~g 73 (193)
++=..+|+-.|.+|||||-.++. ++.... ... .++ ...-.+.+.++.+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 45578999999999999999974 221110 000 111 12335678899999999999
Q ss_pred hhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC---CCHHHHHHhhCCCc
Q 029453 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA---ASEDELRYHMGLTN 150 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~---~~~~~~~~~~~~~~ 150 (193)
|+.|..=.-.-+..+|+.++|+|+..+ ++.....+.++.+. .++|++-.+||.|..-. +-.+|+++.+++..
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~ 165 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL---RDIPIFTFINKLDREGRDPLELLDEIEEELGIQC 165 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh---cCCceEEEeeccccccCChHHHHHHHHHHhCcce
Confidence 998866544556779999999999876 44444444444443 69999999999997622 33345777776544
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.3e-10 Score=86.00 Aligned_cols=120 Identities=22% Similarity=0.238 Sum_probs=74.4
Q ss_pred HHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcC----Ccc-------------cc--C---CCCCcce---eEEEe--C
Q 029453 10 ILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDE----RLV-------------QH--Q---PTQYPTS---EELSI--G 62 (193)
Q Consensus 10 ~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~----~~~-------------~~--~---~t~~~~~---~~~~~--~ 62 (193)
+..=..+..-++-|+++|+.++|||||+|+|.+. ... +. . .|.+|.. ..++. .
T Consensus 7 ykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~ 86 (492)
T TIGR02836 7 YKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININ 86 (492)
T ss_pred HHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEecc
Confidence 3334456778899999999999999999999866 221 11 1 1333333 22222 1
Q ss_pred ---CeEEEEEEcCChh--------hhHH---------------------hHHhhhc-cCCEEEEEE-eCC----ChhhHH
Q 029453 63 ---KIKFKAFDLGGHQ--------MARR---------------------VWKDYYA-KVDAVVYLI-DAY----DKERFS 104 (193)
Q Consensus 63 ---~~~~~~~D~~g~~--------~~~~---------------------~~~~~~~-~~d~ii~v~-d~~----~~~~~~ 104 (193)
..++.++||+|.. +... -....+. .++..++|. |.+ .++.+.
T Consensus 87 ~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~ 166 (492)
T TIGR02836 87 EGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYV 166 (492)
T ss_pred CCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccch
Confidence 3689999999822 1111 0223344 789999998 775 112233
Q ss_pred HH-HHHHHHHHhCCCCCCCcEEEEeeCCCC
Q 029453 105 ES-KRELDALLSDEALADVPFLILGNKIDI 133 (193)
Q Consensus 105 ~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl 133 (193)
.. ..++..+. . .++|.++++||.|-
T Consensus 167 ~aEe~~i~eLk-~---~~kPfiivlN~~dp 192 (492)
T TIGR02836 167 EAEERVIEELK-E---LNKPFIILLNSTHP 192 (492)
T ss_pred HHHHHHHHHHH-h---cCCCEEEEEECcCC
Confidence 33 34444443 3 48999999999994
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-11 Score=88.21 Aligned_cols=96 Identities=20% Similarity=0.137 Sum_probs=70.2
Q ss_pred hhhHHhHHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH-HHHHhhCCCccc
Q 029453 75 QMARRVWKDYYAKVDAVVYLIDAYDKE-RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASED-ELRYHMGLTNFT 152 (193)
Q Consensus 75 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 152 (193)
+++..+...++.++|++++|+|+.++. ++..+..|+..+.. .++|+++|+||+||....... +..+.+..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~---- 95 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN---- 95 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHHH----
Confidence 455555566788999999999999876 78888888875532 579999999999996432221 22222211
Q ss_pred cCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 153 TGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...+++.+||++|.|++++++.+.+.
T Consensus 96 -------------~g~~v~~~SAktg~gi~eLf~~l~~~ 121 (245)
T TIGR00157 96 -------------IGYQVLMTSSKNQDGLKELIEALQNR 121 (245)
T ss_pred -------------CCCeEEEEecCCchhHHHHHhhhcCC
Confidence 12478999999999999999988653
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.7e-10 Score=81.17 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=70.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcce--------------------------------------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYPTS-------------------------------------- 56 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~~-------------------------------------- 56 (193)
-..++++++|+.||||||+++.+.+..+.... .|..+..
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 36679999999999999999999876522110 0110000
Q ss_pred -----------eEEE--eC-CeEEEEEEcCChhh-------------hHHhHHhhhcc-CCEEEEEEeCCChhhHHHHHH
Q 029453 57 -----------EELS--IG-KIKFKAFDLGGHQM-------------ARRVWKDYYAK-VDAVVYLIDAYDKERFSESKR 108 (193)
Q Consensus 57 -----------~~~~--~~-~~~~~~~D~~g~~~-------------~~~~~~~~~~~-~d~ii~v~d~~~~~~~~~~~~ 108 (193)
-.++ .. -..+.++||||... ...+...++++ .+.+++|+|+...-.-+....
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 0011 11 15788999999531 23345567774 568999999865311122222
Q ss_pred HHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 109 ELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 109 ~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
....+ .. .+.|+++|+||+|+...
T Consensus 184 ia~~l-d~---~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 184 LAKEV-DP---QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHH-HH---cCCcEEEEEECCCCCCc
Confidence 22222 22 47899999999999743
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.6e-11 Score=81.57 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=50.6
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS--EDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
.-|+|+|++.++.. ..+....+ . ..=++|+||.|+.+... .+...+...... ..
T Consensus 120 ~~v~VidvteGe~~--P~K~gP~i------~-~aDllVInK~DLa~~v~~dlevm~~da~~~n---------------p~ 175 (202)
T COG0378 120 LRVVVIDVTEGEDI--PRKGGPGI------F-KADLLVINKTDLAPYVGADLEVMARDAKEVN---------------PE 175 (202)
T ss_pred eEEEEEECCCCCCC--cccCCCce------e-EeeEEEEehHHhHHHhCccHHHHHHHHHHhC---------------CC
Confidence 78888898876311 11101111 1 13489999999985433 344333333222 44
Q ss_pred EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++.+|+++|+|++++++|+....
T Consensus 176 ~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 176 APIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 6899999999999999999997643
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=87.82 Aligned_cols=168 Identities=16% Similarity=0.116 Sum_probs=105.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCC----------------CcceeEE--------Ee----------
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQ----------------YPTSEEL--------SI---------- 61 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~----------------~~~~~~~--------~~---------- 61 (193)
....+.++..|+.++|||||.-.+..+.... ...|. ......+ ..
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 3467889999999999999999987665442 11111 1111111 10
Q ss_pred -----CCeEEEEEEcCChhhhHHhHHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 62 -----GKIKFKAFDLGGHQMARRVWKDYY--AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 62 -----~~~~~~~~D~~g~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
...-+.++||.||+.+.+.....+ ++.|..++++.+++. .+.+.+....++.. ...|+++++||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG--~~~~tkEHLgi~~a---~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDG--VTKMTKEHLGIALA---MELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCC--cchhhhHhhhhhhh---hcCCEEEEEEecccC
Confidence 135688999999999877654433 578999999999887 45555555555444 589999999999998
Q ss_pred CCCCHHHHHHh----hC----CCccccCCC---cccCCCC-CCccEEEEEEeeecCCChhHHHHhhh
Q 029453 135 YAASEDELRYH----MG----LTNFTTGKG---NVNLDNT-NVRPLEVFMCSIVRKMGYGEGFKWLS 189 (193)
Q Consensus 135 ~~~~~~~~~~~----~~----~~~~~~~~~---~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~i~ 189 (193)
++...+...++ +. .+..-.... ....+.. .....+++.+|+.+|+|++-+.+.+.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 65544432222 21 111100000 0011111 22368999999999999987776653
|
|
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.7e-11 Score=92.67 Aligned_cols=134 Identities=19% Similarity=0.339 Sum_probs=93.8
Q ss_pred CcceeEEEe-CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhCCCCCC
Q 029453 53 YPTSEELSI-GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD----------KERFSESKRELDALLSDEALAD 121 (193)
Q Consensus 53 ~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~ 121 (193)
+.....+.+ ++..+.++|.+|+...+.-|.+++.+++++|||++.++ ...+.+....+..+.+.....+
T Consensus 224 Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~ 303 (389)
T PF00503_consen 224 GITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKN 303 (389)
T ss_dssp SEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred CeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccccc
Confidence 344556677 88899999999999889999999999999999999863 2457888899999988777789
Q ss_pred CcEEEEeeCCCCC----CCC----------------CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCCh
Q 029453 122 VPFLILGNKIDIP----YAA----------------SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 122 ~pviiv~nK~Dl~----~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 181 (193)
.|+++++||.|+. ... ..+.....+...+...... ....+.+.+..++|.+..++
T Consensus 304 ~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~-----~~~~~~~~~h~t~a~d~~~~ 378 (389)
T PF00503_consen 304 TPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRN-----NSPSRRIYVHFTCATDTENI 378 (389)
T ss_dssp SEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHST-----TTTCS-EEEEEESTTSHHHH
T ss_pred CceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccC-----CCCCcceEEEEeeecccHHH
Confidence 9999999999974 111 1122222222111111000 00005567789999999999
Q ss_pred hHHHHhhhhh
Q 029453 182 GEGFKWLSQY 191 (193)
Q Consensus 182 ~~~~~~i~~~ 191 (193)
..+|+.+.+.
T Consensus 379 ~~v~~~v~~~ 388 (389)
T PF00503_consen 379 RKVFNAVKDI 388 (389)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhcCc
Confidence 9999988764
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.8e-11 Score=85.28 Aligned_cols=165 Identities=19% Similarity=0.147 Sum_probs=96.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCcce-eEEEeCCeEEEEEEcCC----------hhhhHHhHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV--QHQPTQYPTS-EELSIGKIKFKAFDLGG----------HQMARRVWKD 83 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~-~~~~~~~~~~~~~D~~g----------~~~~~~~~~~ 83 (193)
..+.+++++.|.+|+|||||+|.++..+.. ...++.+.+. ...-.-+..+..+|.|| ...+..+...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~ 212 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKS 212 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHH
Confidence 356789999999999999999999887754 2232333222 11122345788999999 2234444445
Q ss_pred hhc---cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccC
Q 029453 84 YYA---KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 84 ~~~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
|+- +.-.+.+++|++-+ ++..+.....++.+ .+.|+.+|+||||.....-.--....++....-.+...
T Consensus 213 Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~--- 284 (320)
T KOG2486|consen 213 YLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR--- 284 (320)
T ss_pred HHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccc---
Confidence 543 33456667788755 34444444445444 58999999999998632211000000111110000000
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
..+....+++.+|+.++.|++++.-.|.+
T Consensus 285 -~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 285 -GVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred -cceeccCCceeeecccccCceeeeeehhh
Confidence 11112346778999999999998776654
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-10 Score=84.73 Aligned_cols=110 Identities=19% Similarity=0.262 Sum_probs=63.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCC-----------CCCcce--eEEEeCC--eEEEEEEcCChhhh-------
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQP-----------TQYPTS--EELSIGK--IKFKAFDLGGHQMA------- 77 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-----------t~~~~~--~~~~~~~--~~~~~~D~~g~~~~------- 77 (193)
.++|.++|.+|+|||||+|.|++........ +..... ..+.-++ ..+.++||||....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 5899999999999999999999876543210 111111 1222233 57889999993210
Q ss_pred -------HHhHHhhh-------------ccCCEEEEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 78 -------RRVWKDYY-------------AKVDAVVYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 78 -------~~~~~~~~-------------~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
...+..++ .++|+++|.++.+... +...+ ..+..+. ...++|-|+.|+|...
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRLS-----KRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHHT-----TTSEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHhc-----ccccEEeEEecccccC
Confidence 00111111 1479999999986432 33333 4455552 3578999999999864
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.8e-10 Score=85.76 Aligned_cols=78 Identities=23% Similarity=0.329 Sum_probs=56.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCC-----------------eEEEEEEcCChhh----
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGK-----------------IKFKAFDLGGHQM---- 76 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~---- 76 (193)
++|+++|.||||||||+|++.+.... ...| |..+....+.+.. ..+.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999987743 2223 5567666655543 2589999999432
Q ss_pred ---hHHhHHhhhccCCEEEEEEeCC
Q 029453 77 ---ARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 77 ---~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1122334567899999999983
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.6e-10 Score=83.58 Aligned_cols=76 Identities=22% Similarity=0.324 Sum_probs=54.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCe-----------------EEEEEEcCChhh------
Q 029453 23 ILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKI-----------------KFKAFDLGGHQM------ 76 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~-----------------~~~~~D~~g~~~------ 76 (193)
|+++|.||||||||+|++.+.... ..+| |..+....+.+.+. .+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 589999999999999999987753 2223 55666666665432 489999999432
Q ss_pred -hHHhHHhhhccCCEEEEEEeCC
Q 029453 77 -ARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 77 -~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
........++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1223334567899999999873
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-10 Score=76.78 Aligned_cols=88 Identities=17% Similarity=0.111 Sum_probs=61.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccC--CCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQ--PTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
+|++++|..|+|||+|+.++....+.... +|.+ +........+.++.+++|++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 48999999999999999999766654211 1222 1222233456789999999999
Q ss_pred ChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 99 DKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
+.+++... |...+. .....+.|.++++||.|+.
T Consensus 58 ~~~s~~~~--~~~~i~-~~~k~dl~~~~~~nk~dl~ 90 (124)
T smart00010 58 DRDSADNK--NVPEVL-VGNKSDLPILVGGNRDVLE 90 (124)
T ss_pred CHHHHHHH--hHHHHH-hcCCCCCcEEEEeechhhH
Confidence 98777544 544443 3344578899999999984
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.5e-09 Score=78.41 Aligned_cols=159 Identities=15% Similarity=0.177 Sum_probs=97.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC------CeEEEEEEcCChhhhHHhHHhhhcc---C-
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG------KIKFKAFDLGGHQMARRVWKDYYAK---V- 88 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~------~~~~~~~D~~g~~~~~~~~~~~~~~---~- 88 (193)
...+|.++|..|+|||||+.++-+.+ ...+..+.....+... ...+..|-+-|+.......+..+.. +
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 56789999999999999999998766 2333333333333332 2457788888876666665555543 2
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhC--------------------------------------C-------------
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSD--------------------------------------E------------- 117 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~--------------------------------------~------------- 117 (193)
..+|++.|++++..+-+..+.|..++.+ .
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 4678899999874443322222111110 0
Q ss_pred ----------CCCCCcEEEEeeCCCCCC------CCCHHH---HHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecC
Q 029453 118 ----------ALADVPFLILGNKIDIPY------AASEDE---LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRK 178 (193)
Q Consensus 118 ----------~~~~~pviiv~nK~Dl~~------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 178 (193)
..-++|+++|+||||... +...++ +...+....+. .....+.+|++..
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr-------------~GaaLiyTSvKE~ 275 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLR-------------YGAALIYTSVKET 275 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHH-------------cCceeEEeecccc
Confidence 001589999999999841 111111 22222222211 1246799999999
Q ss_pred CChhHHHHhhhhhc
Q 029453 179 MGYGEGFKWLSQYI 192 (193)
Q Consensus 179 ~gi~~~~~~i~~~l 192 (193)
.|++-+..+|..++
T Consensus 276 KNidllyKYivhr~ 289 (473)
T KOG3905|consen 276 KNIDLLYKYIVHRS 289 (473)
T ss_pred cchHHHHHHHHHHh
Confidence 99999999998764
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-09 Score=83.96 Aligned_cols=129 Identities=18% Similarity=0.217 Sum_probs=88.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCC----cceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-PTQY----PTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+-+++.++|+.+||||.+++.+.++.+.... .+.. .+..........+.+.|.+-. ........- ..||++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 346789999999999999999999987766422 1221 122222333345666666643 111111111 459999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-----CCCHHHHHHhhCCCc
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY-----AASEDELRYHMGLTN 150 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~-----~~~~~~~~~~~~~~~ 150 (193)
.+++|.+++.++......+...... ...|+++|++|+|+.+ ..++++++.++++..
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~ 560 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP 560 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC
Confidence 9999999998888877766666433 6899999999999973 345567777777666
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.9e-10 Score=77.61 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=60.5
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKG 156 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 156 (193)
++.+..+.+.++|++++|+|+.++..... ..+...+.. .++|+++|+||+|+.+.....++......
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~-------- 68 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIKES-------- 68 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHHHh--------
Confidence 34566777788999999999987532211 122222222 36899999999998532111111111000
Q ss_pred cccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||+++.|++++++.|.+.+
T Consensus 69 ---------~~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 69 ---------EGIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred ---------CCCcEEEEEccccccHHHHHHHHHHHH
Confidence 113689999999999999999997653
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.1e-10 Score=85.48 Aligned_cols=164 Identities=22% Similarity=0.171 Sum_probs=103.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccc-----------------CCC--C-----------------CcceeEEE---
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQH-----------------QPT--Q-----------------YPTSEELS--- 60 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~-----------------~~t--~-----------------~~~~~~~~--- 60 (193)
+.+|+++|+..+|||||+..+..++...- ..| . ++.-..++
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 56999999999999999988764433210 000 0 01111111
Q ss_pred ---eCCeEEEEEEcCChhhhHHhHHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 61 ---IGKIKFKAFDLGGHQMARRVWKDYY--AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 61 ---~~~~~~~~~D~~g~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
....-+.++|+.||++|.......+ +-.|.-++++.++-. +-++.+....+... -..|+.+|.||+|+++
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLALa---L~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLALA---LHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhhh---hcCcEEEEEEeeccCc
Confidence 1235688999999999876443332 347888888888654 34455544444333 4799999999999998
Q ss_pred CCCHHH-------HHHhhCCCcccc-CCCcccC---CCCC--CccEEEEEEeeecCCChhHHHHhh
Q 029453 136 AASEDE-------LRYHMGLTNFTT-GKGNVNL---DNTN--VRPLEVFMCSIVRKMGYGEGFKWL 188 (193)
Q Consensus 136 ~~~~~~-------~~~~~~~~~~~~-~~~~~~~---~~~~--~~~~~~~~~Sa~~~~gi~~~~~~i 188 (193)
+...+| +.+..++..+.- .++...+ +.++ .+.|++|.+|..+|.|++-+..+|
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 877776 233333333322 2222111 1222 246899999999999999887765
|
|
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-09 Score=86.36 Aligned_cols=118 Identities=16% Similarity=0.181 Sum_probs=81.6
Q ss_pred HHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----------------CCCcc----eeEE-----EeCCeEE
Q 029453 12 VSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----------------TQYPT----SEEL-----SIGKIKF 66 (193)
Q Consensus 12 ~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----------------t~~~~----~~~~-----~~~~~~~ 66 (193)
..+.....-.+++++|+-++|||+|+..+....-...++ .++.. ..++ +...+-+
T Consensus 120 ~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ 199 (971)
T KOG0468|consen 120 GLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLM 199 (971)
T ss_pred HhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeee
Confidence 344556677899999999999999999997554322111 00111 1111 1124678
Q ss_pred EEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 67 KAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 67 ~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.+.|||||-.|.......+..+|++++++|+.++-.+. -...+..... .+.|+++|+||+|..
T Consensus 200 nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmln-tEr~ikhaiq----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 200 NILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLN-TERIIKHAIQ----NRLPIVVVINKVDRL 262 (971)
T ss_pred eeecCCCcccchHHHHHHhhhcceEEEEEEcccCceee-HHHHHHHHHh----ccCcEEEEEehhHHH
Confidence 89999999999888888889999999999998764332 2233333332 589999999999963
|
|
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.3e-10 Score=78.93 Aligned_cols=134 Identities=16% Similarity=0.242 Sum_probs=88.6
Q ss_pred CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhCCCCC
Q 029453 51 TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY----------DKERFSESKRELDALLSDEALA 120 (193)
Q Consensus 51 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~ 120 (193)
|.+.....+...+..+.++|.+|+...+.-|-++++++..+++++..+ +.....+....+..++......
T Consensus 186 TTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~ 265 (359)
T KOG0085|consen 186 TTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 265 (359)
T ss_pred cccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccccc
Confidence 334444455556788999999999988889999999988888877665 3455677777888888777778
Q ss_pred CCcEEEEeeCCCCCCCCCHH-HHHHhhC----------------CCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 121 DVPFLILGNKIDIPYAASED-ELRYHMG----------------LTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 121 ~~pviiv~nK~Dl~~~~~~~-~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
+.+||+.+||.|+..+.... .+...+. +..+... ++ ..-...-...+.|.+-+||..
T Consensus 266 nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~-nP-----d~dKii~SHfTcATDT~NIRf 339 (359)
T KOG0085|consen 266 NSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDM-NP-----DSDKIIYSHFTCATDTENIRF 339 (359)
T ss_pred CCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhh-CC-----CccceeeeeeeecccchhHHH
Confidence 99999999999986332222 2222221 1111110 00 000223345666888899999
Q ss_pred HHHhhhh
Q 029453 184 GFKWLSQ 190 (193)
Q Consensus 184 ~~~~i~~ 190 (193)
+|..+.+
T Consensus 340 VFaaVkD 346 (359)
T KOG0085|consen 340 VFAAVKD 346 (359)
T ss_pred HHHHHHH
Confidence 9987654
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-09 Score=75.07 Aligned_cols=89 Identities=20% Similarity=0.239 Sum_probs=58.7
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
.++.+|++++|+|+.++. ......+...+... ..++|+++|+||+|+.+.....++...+....
T Consensus 5 ~l~~aD~il~VvD~~~p~--~~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~------------- 68 (157)
T cd01858 5 VIDSSDVVIQVLDARDPM--GTRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKEY------------- 68 (157)
T ss_pred hhhhCCEEEEEEECCCCc--cccCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcCC-------------
Confidence 467899999999998862 22223333333221 24589999999999964332223333333221
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...++++||+.+.|+++++++|.+.
T Consensus 69 ---~~~~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 69 ---PTIAFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred ---cEEEEEeeccccccHHHHHHHHHHH
Confidence 1236899999999999999998754
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-09 Score=76.62 Aligned_cols=102 Identities=17% Similarity=0.204 Sum_probs=63.5
Q ss_pred hhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhh-CCCcc
Q 029453 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHM-GLTNF 151 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~-~~~~~ 151 (193)
...+...+..+++++|++++|+|++++.. .....+ ... ..++|+++|+||+|+.+... ..+..... ....
T Consensus 21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~--~~~~~l---~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~- 92 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPG--SLIPRL---RLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAA- 92 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEEECccCCC--ccchhH---HHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHH-
Confidence 33457777888999999999999987531 111111 111 14689999999999974332 22221111 0000
Q ss_pred ccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 152 TTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.. ......+++++||++|.|+++++++|.+.+
T Consensus 93 ~~---------~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 93 AG---------LGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred hh---------cCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 00 000123689999999999999999998753
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-09 Score=73.12 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=39.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC-CeEEEEEEcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFKAFDLGG 73 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g 73 (193)
+..+++++|.+|+|||||+|++.+.......++.+.+.....+. +..+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 56789999999999999999999877655544444333322222 23478999999
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.3e-09 Score=80.52 Aligned_cols=165 Identities=20% Similarity=0.218 Sum_probs=100.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccC-----------------CCCCcc---------eeEEEe-----------
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-----------------PTQYPT---------SEELSI----------- 61 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-----------------~t~~~~---------~~~~~~----------- 61 (193)
-+.|++++|...+|||||+..+..++...-. .|.... -..+++
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 3579999999999999999988765543210 011000 011111
Q ss_pred -CCeEEEEEEcCChhhhHHhHHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC
Q 029453 62 -GKIKFKAFDLGGHQMARRVWKDYYA--KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS 138 (193)
Q Consensus 62 -~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~ 138 (193)
...-+.++|..||.+|.......+. ..|.+.+|+.+.... .+.......+... -++|+.++++|+|+.....
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi--~~tTrEHLgl~~A---L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGI--TWTTREHLGLIAA---LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCC--ccccHHHHHHHHH---hCCCeEEEEEeeccccchh
Confidence 2356889999999988776555444 378999999998753 2323333333222 3899999999999984433
Q ss_pred HH----H---HHHhhCCCcccc----CCCcccC--CCCCCccEEEEEEeeecCCChhHHHHhh
Q 029453 139 ED----E---LRYHMGLTNFTT----GKGNVNL--DNTNVRPLEVFMCSIVRKMGYGEGFKWL 188 (193)
Q Consensus 139 ~~----~---~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 188 (193)
.+ + +....++...+. ..+.... +.......+++.+|+.+|+|++-+..+|
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 32 3 333333333211 0000000 1112245799999999999998776655
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-08 Score=73.59 Aligned_cols=161 Identities=18% Similarity=0.258 Sum_probs=97.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCcceeEEEeCCeEEEEEEcCChhhhHH---hHHhhhccCCEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQH----QPTQYPTSEELSIGKIKFKAFDLGGHQMARR---VWKDYYAKVDAVV 92 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~ii 92 (193)
+++|.++|...|||||+....+....+.. +.|..++...+...-..+.+||.|||..+.. -....++.+.+++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 46799999999999998888776554422 2244455555555557899999999875422 1245678899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHH-hCC-CCCCCcEEEEeeCCCCCCCCC----HHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 93 YLIDAYDKERFSESKRELDALL-SDE-ALADVPFLILGNKIDIPYAAS----EDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~-~~~-~~~~~pviiv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+|+|+.+. +.+....+...+ +.. ..+++.+=+.++|.|...+.- ...+...-+.... .....
T Consensus 107 fvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~----------d~gle 174 (347)
T KOG3887|consen 107 FVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELA----------DAGLE 174 (347)
T ss_pred EEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHH----------hhhhc
Confidence 99999765 333333333322 222 226788889999999763211 1112222211111 11111
Q ss_pred c-EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 P-LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~-~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
. .-.+...+.-.+.+-|.|..+++.|
T Consensus 175 ~v~vsf~LTSIyDHSIfEAFSkvVQkL 201 (347)
T KOG3887|consen 175 KVQVSFYLTSIYDHSIFEAFSKVVQKL 201 (347)
T ss_pred cceEEEEEeeecchHHHHHHHHHHHHH
Confidence 1 1235555667778888888877654
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-09 Score=73.51 Aligned_cols=57 Identities=26% Similarity=0.341 Sum_probs=40.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCCeEEEEEEcCCh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~ 74 (193)
....++++++|.||+|||||+|++.+.......+..+.+. ..+..+ ..+.++||||.
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-~~~~l~DtPGi 172 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-KKVKLLDSPGI 172 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-CCEEEEECcCC
Confidence 3456899999999999999999999877654444333322 222332 46889999993
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.5e-09 Score=73.45 Aligned_cols=97 Identities=21% Similarity=0.158 Sum_probs=61.5
Q ss_pred cCChh-hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCC
Q 029453 71 LGGHQ-MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLT 149 (193)
Q Consensus 71 ~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~ 149 (193)
.|||. +........+.++|++++|+|++++..... ..+...+ .++|+++|+||+|+.+.....++.+.+...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~ 74 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFESK 74 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHhc
Confidence 46654 333344556789999999999987632111 1122221 357999999999996432211222222111
Q ss_pred ccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 150 NFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...++.+||+++.|++++.+.|.+.
T Consensus 75 -----------------~~~vi~iSa~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 75 -----------------GEKVLFVNAKSGKGVKKLLKAAKKL 99 (171)
T ss_pred -----------------CCeEEEEECCCcccHHHHHHHHHHH
Confidence 1357899999999999999988764
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.1e-09 Score=79.43 Aligned_cols=88 Identities=11% Similarity=0.089 Sum_probs=60.9
Q ss_pred hhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCC
Q 029453 83 DYYAKVDAVVYLIDAYDKE-RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
..+.++|.+++|+|+.++. ....+..++.... . .++|+++|+||+||........+...+..
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~-~---~~ip~ILVlNK~DLv~~~~~~~~~~~~~~------------- 147 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAE-S---TGLEIVLCLNKADLVSPTEQQQWQDRLQQ------------- 147 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEEchhcCChHHHHHHHHHHHh-------------
Confidence 3477899999999998764 2334455555442 2 57999999999999643222233333311
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...+++++||+++.|+++++++|...
T Consensus 148 ----~g~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 148 ----WGYQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred ----cCCeEEEEEcCCCCCHHHHhhhhccc
Confidence 12368999999999999999998653
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.9e-09 Score=69.43 Aligned_cols=52 Identities=21% Similarity=0.315 Sum_probs=38.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccC--CCCCcceeEEEeCCeEEEEEEcCCh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQ--PTQYPTSEELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g~ 74 (193)
+++++|.+|+|||||+|++.+....... +..+.....+..++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 8999999999999999999988765332 22333344444443 5789999995
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4e-08 Score=78.45 Aligned_cols=139 Identities=17% Similarity=0.129 Sum_probs=87.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
..+-++++||||+|||||++.+.......+-....-....+....+.+++.++|.+ ...+ ...-+-+|.+++++|.+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~m-iDvaKIaDLVlLlIdgn 144 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD--LHQM-IDVAKIADLVLLLIDGN 144 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH--HHHH-HhHHHhhheeEEEeccc
Confidence 45678899999999999999987544322211111122234556688999999943 2222 23345699999999997
Q ss_pred ChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCC-CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 99 DKERFSESKRELDALLSDEALADVP-FLILGNKIDIP-YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
-+ |.--...+..++.. .+.| |+-|+|+.|+. +..+.......+.-.+|+..- .....|..|.
T Consensus 145 fG--fEMETmEFLnil~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiy----------qGaKlFylsg 208 (1077)
T COG5192 145 FG--FEMETMEFLNILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIY----------QGAKLFYLSG 208 (1077)
T ss_pred cC--ceehHHHHHHHHhh---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHc----------CCceEEEecc
Confidence 65 33333444455444 3444 77788999998 445556677767666664422 2346666664
|
|
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.6e-08 Score=74.85 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=78.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcC----------Ccc-----ccCCCCCc--ceeEEEeC--CeEEEEEEcCChhh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDE----------RLV-----QHQPTQYP--TSEELSIG--KIKFKAFDLGGHQM 76 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~----------~~~-----~~~~t~~~--~~~~~~~~--~~~~~~~D~~g~~~ 76 (193)
..+.+.+|+-+|...-|||||-..+..- ++. +.+..++. +...+.|. ++.+.=.|+|||..
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 3567889999999999999998887411 111 01112232 33445554 46777789999998
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
|-..+-..-.+-|+.|+|+.++|.. ....+....+.++.+. ..+++.+||.|+.++
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~--MPQTrEHlLLArQVGV--~~ivvfiNKvD~V~d 185 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGP--MPQTREHLLLARQVGV--KHIVVFINKVDLVDD 185 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCC--CcchHHHHHHHHHcCC--ceEEEEEecccccCC
Confidence 8776666666789999999999873 3333444444444332 457888899999843
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.4e-09 Score=77.26 Aligned_cols=97 Identities=22% Similarity=0.202 Sum_probs=63.8
Q ss_pred cCChhh-hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCC
Q 029453 71 LGGHQM-ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLT 149 (193)
Q Consensus 71 ~~g~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~ 149 (193)
.|||.. ........++.+|++++|+|+.++.+- ....+...+ .++|+++|+||+|+.+.....++...+...
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~--~~~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~ 76 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSS--RNPMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEEK 76 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCC--CChhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHHc
Confidence 578753 344456678899999999999876321 122233333 267999999999996432222333223111
Q ss_pred ccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 150 NFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
..+++.+||+++.|++++.+.|.+.
T Consensus 77 -----------------~~~vi~iSa~~~~gi~~L~~~i~~~ 101 (276)
T TIGR03596 77 -----------------GIKALAINAKKGKGVKKIIKAAKKL 101 (276)
T ss_pred -----------------CCeEEEEECCCcccHHHHHHHHHHH
Confidence 1367999999999999999888654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-08 Score=72.32 Aligned_cols=81 Identities=21% Similarity=0.511 Sum_probs=65.9
Q ss_pred cceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhCCCCCCCc
Q 029453 54 PTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD----------KERFSESKRELDALLSDEALADVP 123 (193)
Q Consensus 54 ~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p 123 (193)
.....+..+...++.+|.+||...+.-|-.++..+.++|+|+..+. ...+++....+..+-+...+..+.
T Consensus 192 Ifet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tis 271 (379)
T KOG0099|consen 192 IFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTIS 271 (379)
T ss_pred eeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhh
Confidence 3344556667889999999999999999999999999999999873 244667777777776666677899
Q ss_pred EEEEeeCCCCC
Q 029453 124 FLILGNKIDIP 134 (193)
Q Consensus 124 viiv~nK~Dl~ 134 (193)
+|+.+||.|+.
T Consensus 272 vIlFLNKqDll 282 (379)
T KOG0099|consen 272 VILFLNKQDLL 282 (379)
T ss_pred eeEEecHHHHH
Confidence 99999999984
|
|
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-09 Score=79.43 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=95.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccC--------------------------C------CCC---cceeEEEe
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ--------------------------P------TQY---PTSEELSI 61 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~--------------------------~------t~~---~~~~~~~~ 61 (193)
-+.-++|+-+|...-||||++..+++-...... | ..+ +..-.+..
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 346789999999999999999998643321100 0 000 00000111
Q ss_pred C--------CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q 029453 62 G--------KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDI 133 (193)
Q Consensus 62 ~--------~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl 133 (193)
. -+.+.++|+|||+-.-..+...---.|++++++..++...-..-...+..+ ... .-+.++++-||+|+
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav-eiM--~LkhiiilQNKiDl 191 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDL 191 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH-HHh--hhceEEEEechhhh
Confidence 1 146789999999865433322212258888888887643211111112211 111 23678999999999
Q ss_pred CCCCCH-HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 134 PYAASE-DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 134 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++.+. ++.++...... ....+..+++++||.-++|++-+.++|.+++
T Consensus 192 i~e~~A~eq~e~I~kFi~-----------~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 192 IKESQALEQHEQIQKFIQ-----------GTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred hhHHHHHHHHHHHHHHHh-----------ccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 743322 22333332222 1222456899999999999999999998764
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-08 Score=75.57 Aligned_cols=87 Identities=20% Similarity=0.061 Sum_probs=61.8
Q ss_pred hhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCC
Q 029453 83 DYYAKVDAVVYLIDAYDKE-RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
..+.++|.+++|+|+.++. ++..+..++..+.. .++|+++|+||+|+.+............ .
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~--~----------- 136 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEAL--A----------- 136 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHHH--h-----------
Confidence 3477899999999999886 66677776665532 4789999999999964311111111110 0
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
...+++++||+++.|+++++++|..
T Consensus 137 ----~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 137 ----LGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred ----CCCeEEEEECCCCccHHHHHhhhcc
Confidence 1247899999999999999998764
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.4e-07 Score=72.03 Aligned_cols=83 Identities=22% Similarity=0.212 Sum_probs=55.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC------CeEEEEEEcCChhhhHHhHHhhhcc----
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG------KIKFKAFDLGGHQMARRVWKDYYAK---- 87 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~------~~~~~~~D~~g~~~~~~~~~~~~~~---- 87 (193)
-.+..|.|+|..++|||||+.+|.+.+. ..++.+-.+...+.. ...+.+|-+.|...+..+..-.+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 3567999999999999999999876542 223333333333221 2468899998866666655544432
Q ss_pred CCEEEEEEeCCChhh
Q 029453 88 VDAVVYLIDAYDKER 102 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~ 102 (193)
--++|+|+|.+.|..
T Consensus 101 ~t~vvIvlDlS~PW~ 115 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWN 115 (472)
T ss_pred ceEEEEEecCCChHH
Confidence 257888999987644
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-08 Score=76.47 Aligned_cols=85 Identities=22% Similarity=0.129 Sum_probs=57.9
Q ss_pred hccCCEEEEEEeCCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHhhCCCccccCCCcccCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIPYAA-SEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
..++|.+++|+|+.++...... ..++..+ .. .++|+++|+||+|+.... ...++...+..
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~-------------- 139 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDLEEARELLALYRA-------------- 139 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCHHHHHHHHHHHHH--------------
Confidence 4789999999999887554443 4454444 22 478999999999996221 11112222211
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
...+++++||+++.|+++++++|..
T Consensus 140 ---~g~~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 140 ---IGYDVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred ---CCCeEEEEeCCCCccHHHHHhhccC
Confidence 1147899999999999999998864
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.5e-08 Score=74.70 Aligned_cols=79 Identities=24% Similarity=0.345 Sum_probs=57.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeC------------------CeEEEEEEcCChhh--
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIG------------------KIKFKAFDLGGHQM-- 76 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~------------------~~~~~~~D~~g~~~-- 76 (193)
.++++|+|.||+|||||+|.+...... ..+| |..|+....... ...+.++|.+|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 578999999999999999999877743 4555 666665544331 24688999988332
Q ss_pred -----hHHhHHhhhccCCEEEEEEeCC
Q 029453 77 -----ARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 77 -----~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
....+...++.+|+++.|+|+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2233445578899999999996
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-08 Score=69.02 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=52.9
Q ss_pred CEEEEEEeCCChhhHHHHHHHHH-HHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 89 DAVVYLIDAYDKERFSESKRELD-ALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
|++++|+|+.++.+.. ..++. ..+.. .++|+++|+||+|+.+.....++...+... ..
T Consensus 1 Dvvl~VvD~~~p~~~~--~~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----------------~~ 59 (155)
T cd01849 1 DVILEVLDARDPLGTR--SPDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRHS----------------YP 59 (155)
T ss_pred CEEEEEEeccCCcccc--CHHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHhh----------------CC
Confidence 7899999998874322 22332 23222 478999999999996432222222222111 12
Q ss_pred EEEEEEeeecCCChhHHHHhhhh
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
..++.+||+++.|++++.+.|.+
T Consensus 60 ~~ii~vSa~~~~gi~~L~~~i~~ 82 (155)
T cd01849 60 TIPFKISATNGQGIEKKESAFTK 82 (155)
T ss_pred ceEEEEeccCCcChhhHHHHHHH
Confidence 46899999999999999998864
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=65.25 Aligned_cols=61 Identities=25% Similarity=0.284 Sum_probs=42.6
Q ss_pred HhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccee--EEEeCCeEEEEEEcCCh
Q 029453 13 SLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSE--ELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 13 ~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~ 74 (193)
..+......+++++|.+|+||||++|++.+.......++.+.+.. .+.. +..+.+|||||.
T Consensus 94 ~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~DtpGi 156 (156)
T cd01859 94 LAKIDGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI-TSKIYLLDTPGV 156 (156)
T ss_pred HHhhcCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc-CCCEEEEECcCC
Confidence 334455678999999999999999999997765554444443322 2222 236889999993
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.1e-08 Score=78.55 Aligned_cols=157 Identities=19% Similarity=0.226 Sum_probs=108.3
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CCCcc--eeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-TQYPT--SEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-t~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
+..-.++|++|+|..++|||+|++++..+.+...+. ..+.. ..........+.+.|.+|+... .+-..+|++
T Consensus 25 srsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~a-----Qft~wvdav 99 (749)
T KOG0705|consen 25 SRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDA-----QFCQWVDAV 99 (749)
T ss_pred ecccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCchh-----hhhhhccce
Confidence 345578999999999999999999999998885443 32222 2233344567777788885432 234558999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC---CCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP---YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|+|+..-+..+++........+........+|++.++++--.. +....+.-...+.... ..+
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~---------------krc 164 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQM---------------KRC 164 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhc---------------Ccc
Confidence 9999999888888888777777666556778888888764332 1112111111222222 346
Q ss_pred EEEEEeeecCCChhHHHHhhhhh
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.+++.++.+|.++..+|..++..
T Consensus 165 sy~et~atyGlnv~rvf~~~~~k 187 (749)
T KOG0705|consen 165 SYYETCATYGLNVERVFQEVAQK 187 (749)
T ss_pred ceeecchhhhhhHHHHHHHHHHH
Confidence 78999999999999999988764
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.4e-08 Score=71.09 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=51.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC-CCCcceeEEEeCCeEEEEEEcCChhhhH-------HhHHhhhccCCE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV--QHQP-TQYPTSEELSIGKIKFKAFDLGGHQMAR-------RVWKDYYAKVDA 90 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~-t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~ 90 (193)
.+++++|.|.+||||++..+.+.... ++.- |.......+++.+-.+.+.|.||.-+.. ....+.-+.|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 48999999999999999998875533 1211 2222334455777789999999843221 011112245788
Q ss_pred EEEEEeCCCh
Q 029453 91 VVYLIDAYDK 100 (193)
Q Consensus 91 ii~v~d~~~~ 100 (193)
+++|.|+..|
T Consensus 140 i~~vld~~kp 149 (358)
T KOG1487|consen 140 IFIVLDVLKP 149 (358)
T ss_pred EEEEeeccCc
Confidence 8888888644
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.7e-08 Score=72.45 Aligned_cols=57 Identities=19% Similarity=0.370 Sum_probs=41.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCCeEEEEEEcCCh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~ 74 (193)
....++++++|.||+||||++|.+.+.......+..+.+. ..+..+ ..+.++||||.
T Consensus 118 ~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPGi 176 (287)
T PRK09563 118 RPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG-KGLELLDTPGI 176 (287)
T ss_pred CcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC-CcEEEEECCCc
Confidence 3467899999999999999999999877654444333222 233333 35889999995
|
|
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.7e-08 Score=72.01 Aligned_cols=85 Identities=24% Similarity=0.360 Sum_probs=61.6
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeC-----------------CeEEEEEEcCC
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIG-----------------KIKFKAFDLGG 73 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~-----------------~~~~~~~D~~g 73 (193)
+++..++++++|+|.|++|||||+|.+...... ...| |.+++...+... ...+.++|..|
T Consensus 14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG 93 (391)
T KOG1491|consen 14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG 93 (391)
T ss_pred ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence 455668889999999999999999999887765 3444 666666554432 24688999988
Q ss_pred hhhh-------HHhHHhhhccCCEEEEEEeCC
Q 029453 74 HQMA-------RRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 74 ~~~~-------~~~~~~~~~~~d~ii~v~d~~ 98 (193)
..+. ...+...++.+|+++.|+++.
T Consensus 94 LvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 94 LVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 4322 223344567899999999985
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-06 Score=69.62 Aligned_cols=85 Identities=16% Similarity=0.189 Sum_probs=57.8
Q ss_pred eEEEEEEcCCh-------------hhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeC
Q 029453 64 IKFKAFDLGGH-------------QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNK 130 (193)
Q Consensus 64 ~~~~~~D~~g~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK 130 (193)
....++|+||. +...++..+++++.+++|+|+--..- ..-..-...++.+....+...|+|+||
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV---DAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV---DAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc---chhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 35778999992 23456777899999999999854321 222223334444555567889999999
Q ss_pred CCCC--CCCCHHHHHHhhCCCcc
Q 029453 131 IDIP--YAASEDELRYHMGLTNF 151 (193)
Q Consensus 131 ~Dl~--~~~~~~~~~~~~~~~~~ 151 (193)
+|+. +-..++.+.+.+.-..|
T Consensus 489 VDlAEknlA~PdRI~kIleGKLF 511 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLF 511 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCcc
Confidence 9998 34677777777776553
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.4e-07 Score=69.06 Aligned_cols=117 Identities=21% Similarity=0.259 Sum_probs=70.8
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccC-----------CCCCcceeE--EEeCC--eEEEEEEcCChhhh-
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-----------PTQYPTSEE--LSIGK--IKFKAFDLGGHQMA- 77 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~- 77 (193)
.....-.++|.++|++|+|||||+|.+++....... ++....... +.-++ ..+.++||||...+
T Consensus 17 ~~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~i 96 (373)
T COG5019 17 LSKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFI 96 (373)
T ss_pred HHhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccc
Confidence 334467899999999999999999999877433221 111111111 12222 57889999993321
Q ss_pred -------------HHhHHhhh--------------ccCCEEEEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEee
Q 029453 78 -------------RRVWKDYY--------------AKVDAVVYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGN 129 (193)
Q Consensus 78 -------------~~~~~~~~--------------~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~n 129 (193)
......++ .++|+.+|.+..+.- .+..++ ..+..+. ..+-+|-|+.
T Consensus 97 dNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls-----~~vNlIPVI~ 170 (373)
T COG5019 97 DNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS-----KRVNLIPVIA 170 (373)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh-----cccCeeeeee
Confidence 11111222 147899999987532 234433 3444443 2456888999
Q ss_pred CCCCCCC
Q 029453 130 KIDIPYA 136 (193)
Q Consensus 130 K~Dl~~~ 136 (193)
|+|....
T Consensus 171 KaD~lT~ 177 (373)
T COG5019 171 KADTLTD 177 (373)
T ss_pred ccccCCH
Confidence 9998643
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-07 Score=72.71 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=58.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc-c-ccCC--CCCcceeEEEeCC-----------------eEEEEEEcCChhh---
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERL-V-QHQP--TQYPTSEELSIGK-----------------IKFKAFDLGGHQM--- 76 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~-~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~--- 76 (193)
.+++++|.|++|||||++.+.+... . ..+| |..++...+.+.+ ..+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999998876 3 2333 5667776666543 3678999999543
Q ss_pred ----hHHhHHhhhccCCEEEEEEeCC
Q 029453 77 ----ARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 77 ----~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
....+...++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2224445678999999999984
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=73.04 Aligned_cols=88 Identities=20% Similarity=0.127 Sum_probs=61.2
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
-++|.+++|++.....++..+..|+.... . .++|+++|+||+|+.+............... .
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~--~------------ 180 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACE-T---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYR--N------------ 180 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHH-h---cCCCEEEEEECccCCCcHHHHHHHHHHHHHH--h------------
Confidence 46899999999887777777777766442 2 5789999999999975432222111111100 0
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
...+++++||+++.|+++++++|...
T Consensus 181 ~g~~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 181 IGYRVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred CCCeEEEEeCCCCcCHHHHHHHHhhC
Confidence 12478999999999999999998653
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.8e-08 Score=66.08 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=47.9
Q ss_pred HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCC
Q 029453 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 82 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
...++.+|++++|+|+.++.+.. ...+..++.... .++|+++|+||+|+.+.....++...+....
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~----------- 71 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKEG----------- 71 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhcC-----------
Confidence 34578899999999998874322 223333333221 4789999999999964332223333322111
Q ss_pred CCCCccEEEEEEeeecCCC
Q 029453 162 NTNVRPLEVFMCSIVRKMG 180 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~g 180 (193)
.+++++||+++.+
T Consensus 72 ------~~ii~iSa~~~~~ 84 (141)
T cd01857 72 ------IVVVFFSALKENA 84 (141)
T ss_pred ------CeEEEEEecCCCc
Confidence 3577888877653
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=4e-08 Score=74.25 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=64.0
Q ss_pred EcCChhh-hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCC
Q 029453 70 DLGGHQM-ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGL 148 (193)
Q Consensus 70 D~~g~~~-~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~ 148 (193)
-.|||.. -.......++.+|++++|+|+.++.+. ....+...+ .++|+++|+||+|+.+....+++.+.+..
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~--~~~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~ 78 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSS--ENPMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEE 78 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCC--CChhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHH
Confidence 3688753 334455668899999999999776321 122333332 26899999999999643222233332211
Q ss_pred CccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 149 TNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
. ..+++.+||+++.|++++.+.|.+.
T Consensus 79 ~-----------------~~~vi~vSa~~~~gi~~L~~~l~~~ 104 (287)
T PRK09563 79 Q-----------------GIKALAINAKKGQGVKKILKAAKKL 104 (287)
T ss_pred c-----------------CCeEEEEECCCcccHHHHHHHHHHH
Confidence 1 1367899999999999999988654
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.67 E-value=7e-08 Score=68.60 Aligned_cols=55 Identities=24% Similarity=0.322 Sum_probs=35.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc----------ccCCCCCcceeEEEeCCeEEEEEEcCCh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV----------QHQPTQYPTSEELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~----------~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 74 (193)
+..+++++|.+|+|||||+|.+.+.... ...+........+..+. .+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcCC
Confidence 4578999999999999999999875431 11111111222233332 5789999993
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.4e-08 Score=72.77 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=40.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCC--cceeEEEeCCeEEEEEEcCCh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQY--PTSEELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~D~~g~ 74 (193)
.+.++++++|.||+|||||+|++.+..........+ .....+..+ ..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 467899999999999999999999876543333222 222334443 35789999996
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.3e-08 Score=74.19 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=43.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC-CeEEEEEEcCCh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFKAFDLGGH 74 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~ 74 (193)
......+++++|.||+||||+||+|.+.....+.+..+.+.....+. +..+.++||||.
T Consensus 128 ~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGi 187 (322)
T COG1161 128 LLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGI 187 (322)
T ss_pred CCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCc
Confidence 34567899999999999999999999988765555444444333321 234789999993
|
|
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4e-07 Score=69.63 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=69.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc--------CC--CCCcceeE--EEeCC--eEEEEEEcCChhhh-----
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH--------QP--TQYPTSEE--LSIGK--IKFKAFDLGGHQMA----- 77 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--------~~--t~~~~~~~--~~~~~--~~~~~~D~~g~~~~----- 77 (193)
..-.+.+.++|++|.|||||+|.|+....... .+ |....... +.-++ ..++++||||....
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 34569999999999999999999987754322 11 11222222 22223 57889999993321
Q ss_pred ---------HHhHHhhh-----------c--cCCEEEEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 78 ---------RRVWKDYY-----------A--KVDAVVYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 78 ---------~~~~~~~~-----------~--~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.+....|+ . ++|+.+|.+..+.- .+..++ ..+..+. ..+.+|-|+-|.|..
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~-----~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS-----KKVNLIPVIAKADTL 171 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh-----ccccccceeeccccC
Confidence 11122222 2 57999999997632 133333 3344442 356788899999976
Q ss_pred CC
Q 029453 135 YA 136 (193)
Q Consensus 135 ~~ 136 (193)
..
T Consensus 172 T~ 173 (366)
T KOG2655|consen 172 TK 173 (366)
T ss_pred CH
Confidence 43
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.8e-08 Score=75.58 Aligned_cols=100 Identities=19% Similarity=0.317 Sum_probs=64.4
Q ss_pred hhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccc
Q 029453 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFT 152 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~ 152 (193)
.+.+......+.+.++++++|+|+.+.. ......+...+ .+.|+++|+||+|+.+. ...+++...+.... +
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~--~s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~-k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE--GSLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA-K 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC--CCccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHH-H
Confidence 5677888888888999999999997653 22222333332 36799999999999743 23333322211000 0
Q ss_pred cCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 153 TGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
. . .....+++.+||++|.|++++++.|.+
T Consensus 122 ~-~--------g~~~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 122 E-L--------GLKPVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred H-c--------CCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence 0 0 001135899999999999999999865
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.6e-07 Score=67.89 Aligned_cols=129 Identities=23% Similarity=0.256 Sum_probs=84.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEe-------------------------C------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ----HQPTQYPTSEELSI-------------------------G------ 62 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~-------------------------~------ 62 (193)
..++=|.++|+=..|||||++-+....+.. .+||...-...+.. +
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 356679999999999999999999887763 23333221111110 0
Q ss_pred -------C---eEEEEEEcCChhh-----------hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCC
Q 029453 63 -------K---IKFKAFDLGGHQM-----------ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALAD 121 (193)
Q Consensus 63 -------~---~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (193)
+ ..+.++||||.-. |.....=+.+++|.+++++|+...+.=.+....+..+.. ..
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HE 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----Cc
Confidence 1 3578999999322 222333345789999999999866544455555555533 34
Q ss_pred CcEEEEeeCCCCCCCCCHHHHHHhhCCCcccc
Q 029453 122 VPFLILGNKIDIPYAASEDELRYHMGLTNFTT 153 (193)
Q Consensus 122 ~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 153 (193)
-.+=||+||.|.. ..+|+...++...|.-
T Consensus 212 dkiRVVLNKADqV---dtqqLmRVyGALmWsl 240 (532)
T KOG1954|consen 212 DKIRVVLNKADQV---DTQQLMRVYGALMWSL 240 (532)
T ss_pred ceeEEEecccccc---CHHHHHHHHHHHHHhh
Confidence 5678899999964 5567777777666543
|
|
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.5e-08 Score=80.19 Aligned_cols=108 Identities=20% Similarity=0.174 Sum_probs=74.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc---------------ccCCCCCccee--EEEe--CCeEEEEEEcCChhhhHHhH
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV---------------QHQPTQYPTSE--ELSI--GKIKFKAFDLGGHQMARRVW 81 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~---------------~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~ 81 (193)
=+++++.+..-|||||+..+....-. ..+.+++.+.+ .++. +++.+.++|+|||..|.+..
T Consensus 10 rn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sev 89 (887)
T KOG0467|consen 10 RNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEV 89 (887)
T ss_pred eEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhh
Confidence 37899999999999999998643321 01123333322 2333 67889999999999999988
Q ss_pred HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q 029453 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDI 133 (193)
Q Consensus 82 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl 133 (193)
.....-+|+++.++|+.++-.-+. ..++++....+..+++|+||+|.
T Consensus 90 ssas~l~d~alvlvdvvegv~~qt-----~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 90 SSASRLSDGALVLVDVVEGVCSQT-----YAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhcCCcEEEEeeccccchhH-----HHHHHHHHHccCceEEEEehhhh
Confidence 888888999999999976521121 12222222246778999999993
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.5e-07 Score=60.32 Aligned_cols=110 Identities=19% Similarity=0.253 Sum_probs=59.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCC--eEEEEEEcC-C---------------------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK--IKFKAFDLG-G--------------------- 73 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~-g--------------------- 73 (193)
....||++.|+||+||||++.++...-........+.-...++-++ .-|.++|+. |
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 3567999999999999999998863221111111112222233222 235555554 2
Q ss_pred ---hh-hhHHhHHhhhccCCEEEEEEeCCChhh--HHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q 029453 74 ---HQ-MARRVWKDYYAKVDAVVYLIDAYDKER--FSESKRELDALLSDEALADVPFLILGNKIDI 133 (193)
Q Consensus 74 ---~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl 133 (193)
.+ ........+++.+|++|+ |---+=- -..+......++. .++|++.++++.+.
T Consensus 83 v~~le~i~~~al~rA~~~aDvIII--DEIGpMElks~~f~~~ve~vl~----~~kpliatlHrrsr 142 (179)
T COG1618 83 VEGLEEIAIPALRRALEEADVIII--DEIGPMELKSKKFREAVEEVLK----SGKPLIATLHRRSR 142 (179)
T ss_pred HHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhccHHHHHHHHHHhc----CCCcEEEEEecccC
Confidence 11 112333445566786655 6543300 1234444555543 47899999988764
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-06 Score=62.97 Aligned_cols=118 Identities=14% Similarity=-0.011 Sum_probs=67.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC--Ccccc----CCCCCcceeEEEe---CCeEEEEEEcCChhhhH------HhH
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE--RLVQH----QPTQYPTSEELSI---GKIKFKAFDLGGHQMAR------RVW 81 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~--~~~~~----~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~------~~~ 81 (193)
..+-.-|+++|++++|||+|+|++++. .+... ..|.+.-...... .+..+.++||||..... ...
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 345567999999999999999999988 44321 1233333333333 35789999999954221 111
Q ss_pred Hhhhcc--CCEEEEEEeCCChhhHHHHHHHHHHH---------HhCCCCCCCcEEEEeeCCCCC
Q 029453 82 KDYYAK--VDAVVYLIDAYDKERFSESKRELDAL---------LSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 82 ~~~~~~--~d~ii~v~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~pviiv~nK~Dl~ 134 (193)
...+.. ++++||..+.............+... ...........++++-..++.
T Consensus 84 ~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~~ 147 (224)
T cd01851 84 LFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSLD 147 (224)
T ss_pred HHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcCC
Confidence 122223 78999988886532222222222211 111223445577777666654
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=66.01 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=39.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCC--CCcceeEEEeCCeEEEEEEcCCh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPT--QYPTSEELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~D~~g~ 74 (193)
....++++++|.+|+|||||+|++.+.......+. .......+..+ ..+.++||||.
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 34567999999999999999999998776433221 11222223333 45789999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.5e-07 Score=63.19 Aligned_cols=126 Identities=18% Similarity=0.237 Sum_probs=73.6
Q ss_pred CeEEEEEEcCChhhhHH---hHH---hhhc---cCCEEEEEEeCC---Ch-hhHHHHHHHHHHHHhCCCCCCCcEEEEee
Q 029453 63 KIKFKAFDLGGHQMARR---VWK---DYYA---KVDAVVYLIDAY---DK-ERFSESKRELDALLSDEALADVPFLILGN 129 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~---~~~---~~~~---~~d~ii~v~d~~---~~-~~~~~~~~~~~~~~~~~~~~~~pviiv~n 129 (193)
...+-+.|+|||-+... ..+ ..++ ---+++|++|.. +. .-+.+....+..... -..|-|=|++
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvls 172 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLS 172 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhh
Confidence 35688999999764321 111 1122 245778888874 21 223344444444443 3789999999
Q ss_pred CCCCCCCCCHHHHHHhhCCCccccCC-CcccCCC--------------CCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 130 KIDIPYAASEDELRYHMGLTNFTTGK-GNVNLDN--------------TNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 130 K~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
|+||.....++++...++........ ...+..+ ....-++++|.-..+.+.++.++..|..++
T Consensus 173 KMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 173 KMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 99998777777777776644321111 0000000 011235788888888888888888876543
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.5e-08 Score=74.56 Aligned_cols=161 Identities=16% Similarity=0.091 Sum_probs=98.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCc-----------------------cc-----------cCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERL-----------------------VQ-----------HQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~-----------------------~~-----------~~~t~~~~~~~~~~~ 62 (193)
.+...++.|+|...+||||+-.++....- .+ ...|.+.....++-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 46789999999999999998877641100 00 011333445566667
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhh---HHH--HHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKER---FSE--SKRELDALLSDEALADVPFLILGNKIDIPYAA 137 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~~~--~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~ 137 (193)
...+.+.|.|||..|...+-....++|..++|+.+...+. |.. .......+..- ..-...++++||+|-+...
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt--~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh--hccceEEEEEEeccCCccC
Confidence 8899999999999888776667788999999999854321 111 11222222211 1346789999999987332
Q ss_pred CHHHH----HHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHH
Q 029453 138 SEDEL----RYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFK 186 (193)
Q Consensus 138 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 186 (193)
...+. ...+.... .. . --.......++++|..+|.++++..+
T Consensus 234 Ws~eRy~E~~~k~~~fL-r~-~-----g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFL-RK-L-----GFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHH-HH-h-----cccCCCCceeeecccccccchhhccc
Confidence 22221 11111100 00 0 00112456899999999999987654
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.4e-07 Score=66.34 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=66.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--ccC-CCCCcceeEEEeCCeEEEEEEcCChhhhHHhH-------HhhhccC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--QHQ-PTQYPTSEELSIGKIKFKAFDLGGHQMARRVW-------KDYYAKV 88 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~-~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~~~~~ 88 (193)
-..||+++|.|.+|||||+..+...... .++ .|-......+.+++..+.+.|+||.-+..+.- .+.-+.+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 4569999999999999999998765433 222 24445567788999999999999954332221 1223468
Q ss_pred CEEEEEEeCCChhhHH-HHHHHHHHHH
Q 029453 89 DAVVYLIDAYDKERFS-ESKRELDALL 114 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~-~~~~~~~~~~ 114 (193)
|.+++|.|++..+... -+...+..+-
T Consensus 141 DlilMvLDatk~e~qr~~le~ELe~vG 167 (364)
T KOG1486|consen 141 DLILMVLDATKSEDQREILEKELEAVG 167 (364)
T ss_pred cEEEEEecCCcchhHHHHHHHHHHHhc
Confidence 9999999998765433 3555555553
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.5e-07 Score=62.50 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
-+.++|+.|||||||++++...
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4679999999999999998754
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.6e-07 Score=64.51 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=38.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc--CC--CCCcceeEEEeCCeEEEEEEcCCh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH--QP--TQYPTSEELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~D~~g~ 74 (193)
.....+++++|.+|+||||++|.+.+...... .+ |..... +..+ ..+.++||||.
T Consensus 97 ~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~liDtPG~ 155 (155)
T cd01849 97 LKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD-NKIKLLDTPGI 155 (155)
T ss_pred cccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec-CCEEEEECCCC
Confidence 34678999999999999999999998764322 22 333332 3333 45889999993
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-06 Score=65.84 Aligned_cols=109 Identities=20% Similarity=0.148 Sum_probs=60.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-------cCCCCC-------------cceeEE-------------------
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-------HQPTQY-------------PTSEEL------------------- 59 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-------~~~t~~-------------~~~~~~------------------- 59 (193)
+...++++|++|+||||++..+...-... ...+.. .....+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45689999999999999998874221100 000100 000000
Q ss_pred EeCCeEEEEEEcCChhhhHH----hHHh---hh-----ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEE
Q 029453 60 SIGKIKFKAFDLGGHQMARR----VWKD---YY-----AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLIL 127 (193)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~~~----~~~~---~~-----~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv 127 (193)
...++++.++||||...... .... .+ ..++..++|+|++... ..+. ....+... -.+.-++
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~-~a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALS-QAKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHH-HHHHHHhh----CCCCEEE
Confidence 11356899999999532111 1111 11 2467889999998642 2222 23333221 1345788
Q ss_pred eeCCCCC
Q 029453 128 GNKIDIP 134 (193)
Q Consensus 128 ~nK~Dl~ 134 (193)
+||.|..
T Consensus 266 lTKlD~t 272 (318)
T PRK10416 266 LTKLDGT 272 (318)
T ss_pred EECCCCC
Confidence 9999975
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.47 E-value=2e-06 Score=64.46 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=39.4
Q ss_pred CCeEEEEEEcCChhhhHHh----HH---hhhc-----cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEee
Q 029453 62 GKIKFKAFDLGGHQMARRV----WK---DYYA-----KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGN 129 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~----~~---~~~~-----~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~n 129 (193)
.++++.++||||....... .. ...+ .+|..++|+|++... ... .....+.+.. .+--+++|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HHHHHHHhhC----CCCEEEEE
Confidence 3578999999995432211 11 1111 378999999997542 222 3334443221 24688899
Q ss_pred CCCCC
Q 029453 130 KIDIP 134 (193)
Q Consensus 130 K~Dl~ 134 (193)
|.|..
T Consensus 226 KlDe~ 230 (272)
T TIGR00064 226 KLDGT 230 (272)
T ss_pred ccCCC
Confidence 99986
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2e-06 Score=66.08 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=38.7
Q ss_pred CeEEEEEEcCChhhh----HHhHHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 63 KIKFKAFDLGGHQMA----RRVWKDYY--AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
+.++.++||+|.... -....... -+.|..++|+|+...+ ........+... -..--+++||.|...
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~----~~~~giIlTKlD~~~ 293 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEA----VGIDGVILTKVDADA 293 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhc----CCCCEEEEeeecCCC
Confidence 467899999995421 11112221 2578899999997652 333333333221 123578899999863
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-06 Score=77.81 Aligned_cols=113 Identities=19% Similarity=0.152 Sum_probs=66.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-c----CCC--CCcceeEEEeCCeEEEEEEcCChh--------hhHHhHHhhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-H----QPT--QYPTSEELSIGKIKFKAFDLGGHQ--------MARRVWKDYY 85 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~----~~t--~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~ 85 (193)
+=.+++|++||||||+++.- +-.+.- . ..+ .+.+...-.+-..+-.++||+|.- .....|..++
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL 190 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFL 190 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHH
Confidence 34789999999999999986 333321 1 111 111221111223455699999921 1223344333
Q ss_pred ---------ccCCEEEEEEeCCCh-----hhH----HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 86 ---------AKVDAVVYLIDAYDK-----ERF----SESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 86 ---------~~~d~ii~v~d~~~~-----~~~----~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
+..+++|+++|+.+. +.. ..+...+.++... .....||.+++||+|+.+
T Consensus 191 ~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 191 GLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 248999999999742 111 2233444444332 235899999999999873
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.2e-07 Score=63.65 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=34.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCC-----CCCc----ceeEEEeCCeEEEEEEcCChhhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQP-----TQYP----TSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~----~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
..++++|++|||||||+|.+.+.....+.. ..+. ....+.... ...++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~-g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD-GGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT-SEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC-CcEEEECCCCCcc
Confidence 589999999999999999999875332211 1111 222334422 3468899996654
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.5e-08 Score=75.05 Aligned_cols=124 Identities=16% Similarity=0.073 Sum_probs=87.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc----------c-------cC----CCCCcceeEEEeCCeEEEEEEcCChhhhHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV----------Q-------HQ----PTQYPTSEELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~----------~-------~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
+|+++..-.+||||.-.++..-.-. . .+ -|.......+.+.+..+.++|||||..|.-.
T Consensus 39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~le 118 (753)
T KOG0464|consen 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLE 118 (753)
T ss_pred cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEE
Confidence 7999999999999999997522110 0 00 1333344567788999999999999999888
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC---CCCHHHHHHhhCCCc
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY---AASEDELRYHMGLTN 150 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~---~~~~~~~~~~~~~~~ 150 (193)
.+.+++-.|+++.|+|++-+-.-+.+..|-+ ....++|-+..+||+|+.- ....+.+++.++...
T Consensus 119 verclrvldgavav~dasagve~qtltvwrq-----adk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~ 186 (753)
T KOG0464|consen 119 VERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-----ADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKA 186 (753)
T ss_pred HHHHHHHhcCeEEEEeccCCcccceeeeehh-----ccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCce
Confidence 8889999999999999986532233333322 2335899999999999862 233344666666544
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.6e-06 Score=68.69 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=71.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc--CC-------------------CCC--------------------c-
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH--QP-------------------TQY--------------------P- 54 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~~-------------------t~~--------------------~- 54 (193)
...+.||+|.|..++||||++|.+...+..+. .+ +.+ .
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 56788999999999999999999864432210 00 000 0
Q ss_pred ----ceeEEEeC-------CeEEEEEEcCCh---hhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCC
Q 029453 55 ----TSEELSIG-------KIKFKAFDLGGH---QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120 (193)
Q Consensus 55 ----~~~~~~~~-------~~~~~~~D~~g~---~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 120 (193)
....+-++ .-++.++|.||. .....+.-.+...+|++|+|.++-+. +....+.+...... .
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--lt~sek~Ff~~vs~---~ 260 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--LTLSEKQFFHKVSE---E 260 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--hHHHHHHHHHHhhc---c
Confidence 00001111 136889999994 34555666677889999999998665 44444433333333 2
Q ss_pred CCcEEEEeeCCCCCCC
Q 029453 121 DVPFLILGNKIDIPYA 136 (193)
Q Consensus 121 ~~pviiv~nK~Dl~~~ 136 (193)
..-+.|+-||+|....
T Consensus 261 KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 261 KPNIFILNNKWDASAS 276 (749)
T ss_pred CCcEEEEechhhhhcc
Confidence 3446777789998744
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.9e-07 Score=70.43 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=34.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCC-----CCCcc----eeEEEeCCeEEEEEEcCChhhh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQP-----TQYPT----SEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~----~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
.++|+|.+|||||||+|.|.+.....+.. ..+.. ...+.+++ ...++||||...+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-GGDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-CCEEEECCCCCcc
Confidence 47999999999999999999776443211 11111 11223322 1248999997654
|
|
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.2e-06 Score=60.94 Aligned_cols=112 Identities=18% Similarity=0.225 Sum_probs=64.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc--CC--------CCCc--ceeEEEeCC--eEEEEEEcCChhhh---H-
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH--QP--------TQYP--TSEELSIGK--IKFKAFDLGGHQMA---R- 78 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~~--------t~~~--~~~~~~~~~--~~~~~~D~~g~~~~---~- 78 (193)
..-.++|.++|.+|.|||||+|.++....... .+ |... ....+.-++ ..+.++||||.... .
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n 122 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN 122 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence 34578999999999999999999976554321 11 1111 112222233 46889999993321 1
Q ss_pred ----------HhHHhhh------------c--cCCEEEEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCC
Q 029453 79 ----------RVWKDYY------------A--KVDAVVYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDI 133 (193)
Q Consensus 79 ----------~~~~~~~------------~--~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl 133 (193)
.....|+ . ++++.+|.+..+-- ++..++ ..+..+.. -.-++-|+-|.|-
T Consensus 123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~-----vvNvvPVIakaDt 196 (336)
T KOG1547|consen 123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE-----VVNVVPVIAKADT 196 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh-----hheeeeeEeeccc
Confidence 1112222 1 47899999888632 222222 22222321 2347888899996
Q ss_pred C
Q 029453 134 P 134 (193)
Q Consensus 134 ~ 134 (193)
.
T Consensus 197 l 197 (336)
T KOG1547|consen 197 L 197 (336)
T ss_pred c
Confidence 5
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-06 Score=67.69 Aligned_cols=100 Identities=18% Similarity=0.304 Sum_probs=58.4
Q ss_pred hhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHhhCCCcccc
Q 029453 75 QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA-SEDELRYHMGLTNFTT 153 (193)
Q Consensus 75 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 153 (193)
+.+.......-...+.+++|+|+.+.. ......+..+. .+.|+++|+||+|+.+.. ..+++.+.+.... ..
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~-k~ 128 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEA-KE 128 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHH-Hh
Confidence 345555444333344999999998742 22233333332 267999999999997432 2222222111000 00
Q ss_pred CCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 154 GKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
......+++.+||+++.|++++++.|.+.
T Consensus 129 ---------~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 ---------LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred ---------cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 00012368999999999999999998653
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.2e-07 Score=68.46 Aligned_cols=53 Identities=15% Similarity=0.091 Sum_probs=33.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCC-----CC----cceeEEEeCCeEEEEEEcCChh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPT-----QY----PTSEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t-----~~----~~~~~~~~~~~~~~~~D~~g~~ 75 (193)
.++|+|++|+|||||+|.+.+.....+... .+ .....+...+. ..++||||..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g-~~liDTPG~~ 235 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG-GLLADTPGFN 235 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC-cEEEeCCCcc
Confidence 489999999999999999987654422211 11 12233333221 2689999954
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.5e-06 Score=67.36 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=61.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------cCCcc-ccCCCC-----------C--cceeEEE-------------------
Q 029453 20 EAKILFLGLDNSGKTTLLHMLK------DERLV-QHQPTQ-----------Y--PTSEELS------------------- 60 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~------~~~~~-~~~~t~-----------~--~~~~~~~------------------- 60 (193)
...|+++|++||||||++..+. +.+.. ....++ . .....+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999885 21111 000010 0 0000010
Q ss_pred eCCeEEEEEEcCChhhhHH----hHHhh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 61 IGKIKFKAFDLGGHQMARR----VWKDY--YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
..++++.++||+|...... ..... ..+++.+++|+|+.-++ ........+.. .-.+--+++||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq---~a~~~a~~F~~----~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ---AAEAQAKAFKD----SVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh---hHHHHHHHHHh----ccCCcEEEEECccCC
Confidence 0256899999999543221 11111 12478899999997652 22333333321 124567889999986
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.9e-07 Score=70.60 Aligned_cols=57 Identities=21% Similarity=0.222 Sum_probs=45.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC-CeEEEEEEcCC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG-KIKFKAFDLGG 73 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g 73 (193)
......|+++|.||+||||+||.|.+.+...++.|.+-+.+..++- .-.+.+.||||
T Consensus 311 ~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPG 368 (562)
T KOG1424|consen 311 YKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPG 368 (562)
T ss_pred CCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCC
Confidence 3446899999999999999999999999988877777665444331 34567889999
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1e-05 Score=61.84 Aligned_cols=81 Identities=22% Similarity=0.200 Sum_probs=44.7
Q ss_pred eEEEEEEcCChhhhHHhHHhhhc--------cCCEEEEEEeCCChhhHHH-HHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 64 IKFKAFDLGGHQMARRVWKDYYA--------KVDAVVYLIDAYDKERFSE-SKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.+..++++.|..........+.. ..|.++-|+|+.+...... .......-+ ...+ ++++||+|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi---a~AD---~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL---AFAD---VIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH---HhCc---EEEEecccCC
Confidence 45677788885443333333222 3588999999976422111 111111111 1122 8999999998
Q ss_pred CCCCHHHHHHhhCCCc
Q 029453 135 YAASEDELRYHMGLTN 150 (193)
Q Consensus 135 ~~~~~~~~~~~~~~~~ 150 (193)
.+...+.++..+....
T Consensus 159 ~~~~l~~l~~~l~~ln 174 (323)
T COG0523 159 DAEELEALEARLRKLN 174 (323)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6655555555554444
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=6e-06 Score=64.32 Aligned_cols=84 Identities=19% Similarity=0.148 Sum_probs=54.6
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
..++|.+++|+++..+-....+...+..... .++|.++|+||+||.+. .++..+.+....
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~~-------------- 169 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEALA-------------- 169 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHhC--------------
Confidence 3678999999999643222334444444322 47788999999999753 211111111111
Q ss_pred CccEEEEEEeeecCCChhHHHHhhh
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLS 189 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~ 189 (193)
...+++.+|++++.|++++.++|.
T Consensus 170 -~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 170 -PGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred -CCCcEEEEECCCCccHHHHHHHhh
Confidence 224789999999999999999985
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-06 Score=64.58 Aligned_cols=53 Identities=19% Similarity=0.121 Sum_probs=35.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccC-----------CCCCcceeEEEeCCeEEEEEEcCChhhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQ-----------PTQYPTSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
..++++|++|+|||||+|.+.+.....+. .|..... +...+ ..++||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l--~~l~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL--FHFHG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE--EEcCC--cEEEeCCCcccc
Confidence 47899999999999999999876533211 1222222 33322 268999997543
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.1e-06 Score=66.99 Aligned_cols=107 Identities=15% Similarity=0.211 Sum_probs=56.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc-----cccCCCCCcc--eeEEEeCCeEEEEEEcCChhhhHHhHHhhh--------
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERL-----VQHQPTQYPT--SEELSIGKIKFKAFDLGGHQMARRVWKDYY-------- 85 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~-----~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~-------- 85 (193)
.+++++|.+|+|||||+|++.+... .......+.+ ...+..+ ..+.++||||......+. .++
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-~~~~l~DtPG~~~~~~~~-~~l~~~~l~~~ 232 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-DGHSLYDTPGIINSHQMA-HYLDKKDLKYI 232 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-CCCEEEECCCCCChhHhh-hhcCHHHHhhc
Confidence 5899999999999999999987532 1111111212 2223331 245799999965332211 111
Q ss_pred ---ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 86 ---AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 86 ---~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
+......++++....-.+.+ ..++. ++. .....+.+..++.+..
T Consensus 233 ~~~~~i~~~~~~l~~~q~~~~gg-l~~~d-~~~---~~~~~~~~~~~~~~~~ 279 (360)
T TIGR03597 233 TPKKEIKPKTYQLNPNQTLFLGG-LARFD-YLK---GEKTSFTFYVSNELNI 279 (360)
T ss_pred CCCCccCceEEEeCCCCEEEEce-EEEEE-Eec---CCceEEEEEccCCcee
Confidence 23566777776643211111 11111 111 1245567777777655
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.7e-05 Score=58.10 Aligned_cols=136 Identities=20% Similarity=0.265 Sum_probs=75.9
Q ss_pred HHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhc-----------------CCcc---------ccCCCCCcce-eEEEeC
Q 029453 10 ILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKD-----------------ERLV---------QHQPTQYPTS-EELSIG 62 (193)
Q Consensus 10 ~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~-----------------~~~~---------~~~~t~~~~~-~~~~~~ 62 (193)
+..-..+..-.+=|+++||..+|||||+++|.. ++.+ +++|...|+. ..+..+
T Consensus 7 ykDIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~ 86 (492)
T PF09547_consen 7 YKDIAERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLD 86 (492)
T ss_pred HHHHHHhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEec
Confidence 333344566788899999999999999999851 1111 2233333332 334443
Q ss_pred ---CeEEEEEEcCCh--------hh-----------------hHHhH----Hhhhc--cCCEEEEEEeCCC----hhhHH
Q 029453 63 ---KIKFKAFDLGGH--------QM-----------------ARRVW----KDYYA--KVDAVVYLIDAYD----KERFS 104 (193)
Q Consensus 63 ---~~~~~~~D~~g~--------~~-----------------~~~~~----~~~~~--~~d~ii~v~d~~~----~~~~~ 104 (193)
...++++||.|. .+ |...- ++.+. ..=+++.--|.+- ++.+.
T Consensus 87 ~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~ 166 (492)
T PF09547_consen 87 DGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYV 166 (492)
T ss_pred CCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHH
Confidence 368899999871 11 00000 00111 1234555555541 33333
Q ss_pred HHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCc
Q 029453 105 ESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTN 150 (193)
Q Consensus 105 ~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~ 150 (193)
.+. ....++-. -++|.++++|-.+- ......++..++...+
T Consensus 167 eAEervI~ELk~----igKPFvillNs~~P-~s~et~~L~~eL~ekY 208 (492)
T PF09547_consen 167 EAEERVIEELKE----IGKPFVILLNSTKP-YSEETQELAEELEEKY 208 (492)
T ss_pred HHHHHHHHHHHH----hCCCEEEEEeCCCC-CCHHHHHHHHHHHHHh
Confidence 333 44444433 38999999998873 3444456777776665
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.5e-06 Score=64.76 Aligned_cols=55 Identities=20% Similarity=0.290 Sum_probs=34.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc-----ccc--CCCCCcceeEEEeCCeEEEEEEcCChh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERL-----VQH--QPTQYPTSEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~-----~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (193)
..++.++|.+|||||||+|++..... ... .|.+......+..++ ...++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCcc
Confidence 45899999999999999999985431 111 121112222233322 24699999963
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.9e-05 Score=55.40 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=36.7
Q ss_pred CeEEEEEEcCChhhhHH----hHHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARR----VWKDYYA--KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~----~~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
+.++.++||+|...... .+..++. ..+-+++|++++... ..+. ......... + +--+++||.|...
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~-~~~~~~~~~---~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLE-QALAFYEAF---G-IDGLILTKLDETA 154 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHH-HHHHHHHHS---S-TCEEEEESTTSSS
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHH-HHHHHhhcc---c-CceEEEEeecCCC
Confidence 46799999999433221 1122211 578899999998653 2222 233332221 1 2356699999863
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.8e-06 Score=64.57 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
..+++|.+|+|||||+|+|.+..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchh
Confidence 78899999999999999998644
|
|
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.8e-06 Score=56.32 Aligned_cols=58 Identities=12% Similarity=0.175 Sum_probs=34.9
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKID 132 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 132 (193)
+.++.++||+|..... ...+..+|-++++....-.+.. ..... ..+ ...=++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y--~~~k~-~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDI--QAIKA-GIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHH--HHhhh-hHh------hhcCEEEEeCCC
Confidence 5688899998865322 2356778988888887633211 11111 121 122388899998
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=62.88 Aligned_cols=117 Identities=13% Similarity=0.080 Sum_probs=62.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc---------cCCCC---------------CcceeEE-----------EeC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ---------HQPTQ---------------YPTSEEL-----------SIG 62 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~---------~~~t~---------------~~~~~~~-----------~~~ 62 (193)
.+.-.++++|++||||||++..+....... ...+. +...... .+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 345689999999999999999985321100 00011 1011111 123
Q ss_pred CeEEEEEEcCChhhhHH----hHHhh--hccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhCCCCC-CCcEEEEeeCCCCC
Q 029453 63 KIKFKAFDLGGHQMARR----VWKDY--YAKVDAVVYLIDAYDK-ERFSESKRELDALLSDEALA-DVPFLILGNKIDIP 134 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~-~~pviiv~nK~Dl~ 134 (193)
+..+.++||+|...... ..... .....-.++|++++.. +.+......+.......... ..+--+++||.|..
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 57889999999553222 12211 1234556889999764 33333333333332110000 01345778999986
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.1e-05 Score=59.35 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+-..+.|.-|||||||+|++...
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 45678999999999999999743
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.9e-06 Score=58.31 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=44.8
Q ss_pred eEEEEEEc-CChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHH
Q 029453 64 IKFKAFDL-GGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDEL 142 (193)
Q Consensus 64 ~~~~~~D~-~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~ 142 (193)
.++.++|| .|.+.|.+ ...+.+|.+|.|+|.+-.. +. ....+..+.+... -+++.+|+||+|.. .....+.
T Consensus 134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~s-l~-taeri~~L~~elg--~k~i~~V~NKv~e~-e~~~~~~ 205 (255)
T COG3640 134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKS-LR-TAERIKELAEELG--IKRIFVVLNKVDEE-EELLREL 205 (255)
T ss_pred CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHH-HH-HHHHHHHHHHHhC--CceEEEEEeeccch-hHHHHhh
Confidence 45555665 34444332 2346799999999998653 32 2334444444321 38999999999964 2233344
Q ss_pred HHhhCC
Q 029453 143 RYHMGL 148 (193)
Q Consensus 143 ~~~~~~ 148 (193)
...++.
T Consensus 206 ~~~~~~ 211 (255)
T COG3640 206 AEELGL 211 (255)
T ss_pred hhccCC
Confidence 444444
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.7e-05 Score=43.40 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=29.8
Q ss_pred hhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCC
Q 029453 84 YYAKVDAVVYLIDAYDK--ERFSESKRELDALLSDEALADVPFLILGNKID 132 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 132 (193)
.-+-.++++|++|.+.. .+++.....+.++...+ .++|+++|+||+|
T Consensus 10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 33458999999999974 45666666677765543 4899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.9e-06 Score=62.97 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=35.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCC-----CCC----cceeEEEeCCeEEEEEEcCChhhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQP-----TQY----PTSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~----~~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
..++++|++|+|||||+|.+.+........ ..+ .....+...+ ...++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCcc
Confidence 579999999999999999998765432111 011 1112233321 2258999998654
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00013 Score=51.22 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=48.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEE-E---cC-ChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAF-D---LG-GHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-D---~~-g~~~~~~~~~~~~~~~d~ii 92 (193)
.+.-.++++|++|||||||++.+.+-... ....+.+++..+... . .. |+.+........+.++++++
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--------~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIP--------NGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCC--------CCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 35558999999999999999999875422 223333333222211 1 22 34444444445566666555
Q ss_pred EEEeCC----ChhhHHHHHHHHHHHH
Q 029453 93 YLIDAY----DKERFSESKRELDALL 114 (193)
Q Consensus 93 ~v~d~~----~~~~~~~~~~~~~~~~ 114 (193)
+ |-- |+.....+..++..+.
T Consensus 95 L--DEPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 95 F--DEPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred E--ECCcccCCHHHHHHHHHHHHHHH
Confidence 4 542 3443444555555553
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.1e-05 Score=56.75 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=38.8
Q ss_pred eEEEEEEcCChhhhHHh--HHhh---hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q 029453 64 IKFKAFDLGGHQMARRV--WKDY---YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA 137 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~~~--~~~~---~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~ 137 (193)
.++.++++.|....... .... .-..+.++.|+|+.+..........+..-+.. .+ ++++||+|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~---AD---vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF---AD---VIVLNKIDLVSDE 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----S---EEEEE-GGGHHHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh---cC---EEEEeccccCChh
Confidence 46777888884433333 1111 12468999999997753333444444444322 23 8899999997544
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.8e-05 Score=54.35 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=38.6
Q ss_pred CeEEEEEEcCChhhh----HHhHHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 63 KIKFKAFDLGGHQMA----RRVWKDYY--AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
+..+.++|+||.... ........ ...+.+++|+|+.... ........+.+.. + ..-+++||.|..
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~ 152 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGD 152 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCC
Confidence 456888999996422 11111111 2489999999997543 2223444443222 2 356778999986
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=61.09 Aligned_cols=56 Identities=18% Similarity=0.142 Sum_probs=35.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCC-----CCC----cceeEEEeCCeEEEEEEcCChhh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQP-----TQY----PTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~----~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
...++++|++|+|||||+|.+.+........ ..+ .....+...+ ...++||||...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~-~~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG-GGLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC-CcEEEECCCcCc
Confidence 3479999999999999999998765432211 011 1122222322 236899999754
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=2e-05 Score=61.56 Aligned_cols=109 Identities=16% Similarity=0.077 Sum_probs=60.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCc-----c--ccCCCC---------------CcceeEE-------------E-eC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERL-----V--QHQPTQ---------------YPTSEEL-------------S-IG 62 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~-----~--~~~~t~---------------~~~~~~~-------------~-~~ 62 (193)
+...|+++|++||||||++..+...-. . ....+. +...... . ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 446899999999999999999852110 0 000000 0000000 0 01
Q ss_pred CeEEEEEEcCChhhh----HHhHHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 63 KIKFKAFDLGGHQMA----RRVWKDYY--AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
+.++.++||+|.... -......+ ...+.+++|+|++-.. ..+......+- . -..--+++||.|..
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~-~----~~idglI~TKLDET 390 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFK-D----IHIDGIVFTKFDET 390 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhc-C----CCCCEEEEEcccCC
Confidence 358899999995321 11122222 2357788999986431 33444444442 1 12346789999986
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.7e-05 Score=69.37 Aligned_cols=112 Identities=18% Similarity=0.210 Sum_probs=65.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccC-----CCCCcceeEE-EeCCeEEEEEEcCC----h----hhhHHhHHhh---
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQ-----PTQYPTSEEL-SIGKIKFKAFDLGG----H----QMARRVWKDY--- 84 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~-----~t~~~~~~~~-~~~~~~~~~~D~~g----~----~~~~~~~~~~--- 84 (193)
=..|+|++|+||||++..-. -.+.-.. ......+..+ .+-+.+-.++||.| + +.....|..+
T Consensus 127 Wy~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred ceEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 35799999999999987632 2222110 1111112222 23345677899998 2 1223344433
Q ss_pred ------hccCCEEEEEEeCCCh-----h-h---HHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 85 ------YAKVDAVVYLIDAYDK-----E-R---FSESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 85 ------~~~~d~ii~v~d~~~~-----~-~---~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
.+..+++|+.+|+++. . . ...+..-+.++. ..-....||.+++||.|+.+
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~-~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELR-ETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHH-HhhccCCceEEEEecccccc
Confidence 2358999999999742 1 1 112333344443 22335799999999999975
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.8e-06 Score=64.62 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=43.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCCeEEEEEEcCC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGKIKFKAFDLGG 73 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g 73 (193)
.+++++++|+|.|++||||++|++.........++.+.+. ..+.. ...+.+.|.||
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L-dk~i~llDsPg 306 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL-DKKIRLLDSPG 306 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec-cCCceeccCCc
Confidence 4688999999999999999999999888765555444443 33333 34688999999
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00011 Score=59.08 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.--++++|++||||||.+..|.+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHH
Confidence 345799999999999999998863
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.4e-05 Score=61.88 Aligned_cols=109 Identities=12% Similarity=0.008 Sum_probs=60.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCc-----cc----cCCCC---------------Cccee-----------EEEeCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERL-----VQ----HQPTQ---------------YPTSE-----------ELSIGK 63 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~-----~~----~~~t~---------------~~~~~-----------~~~~~~ 63 (193)
+.-+++++|++|+||||++..+.+... .. ...+. +.... .....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 456899999999999999998754210 00 00010 00000 011235
Q ss_pred eEEEEEEcCChhhhH----HhHHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 64 IKFKAFDLGGHQMAR----RVWKDYY--AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
....++||+|..... ....... ....-.++|+|++.. .+.+......+. . --.--+++||.|..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~-~----~~~~~~I~TKlDEt 339 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQ-G----HGIHGCIITKVDEA 339 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhc-C----CCCCEEEEEeeeCC
Confidence 678999999944321 2222221 224567888999754 233444443331 1 12346778999975
|
|
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.9e-06 Score=69.41 Aligned_cols=110 Identities=17% Similarity=0.084 Sum_probs=74.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc----ccC-----------------CCCCcceeEEEeCCeEEEEEEcCChhhhH
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLV----QHQ-----------------PTQYPTSEELSIGKIKFKAFDLGGHQMAR 78 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~----~~~-----------------~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (193)
--+|++.-.-.+||||+-+++....-. ... -|.......+.+.+..+.++|||||-.|-
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 347889999999999999997532210 000 02222334556678899999999999887
Q ss_pred HhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
-.....+.-.|+.++|+|+..+-.- .....++...+ .++|-+..+||+|..
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GVqs-Qt~tV~rQ~~r----y~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGVES-QTETVWRQMKR----YNVPRICFINKMDRM 169 (721)
T ss_pred EEehhhhhhccCeEEEEEcccceeh-hhHHHHHHHHh----cCCCeEEEEehhhhc
Confidence 7777778889999999998765211 12222233322 489999999999964
|
|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.4e-05 Score=58.86 Aligned_cols=112 Identities=20% Similarity=0.277 Sum_probs=62.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhc--------------CCccc-------cCCCC--Ccce----------------
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKD--------------ERLVQ-------HQPTQ--YPTS---------------- 56 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~--------------~~~~~-------~~~t~--~~~~---------------- 56 (193)
...+.--|.++|-.|+||||.+-.+.. +.|-. ...+. .|-.
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv 176 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGV 176 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHH
Confidence 344566799999999999999988741 11100 00000 1111
Q ss_pred eEEEeCCeEEEEEEcCChh-hhHHhHHhhh-----ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeC
Q 029453 57 EELSIGKIKFKAFDLGGHQ-MARRVWKDYY-----AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNK 130 (193)
Q Consensus 57 ~~~~~~~~~~~~~D~~g~~-~~~~~~~~~~-----~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK 130 (193)
..+.-+++++.++||.|.. ...+++.... -+.|-+|+|+|++-.+.-......+...... --+++||
T Consensus 177 ~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdv-------g~vIlTK 249 (483)
T KOG0780|consen 177 DRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDV-------GAVILTK 249 (483)
T ss_pred HHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhcc-------ceEEEEe
Confidence 1122247899999999943 2233333222 1579999999998764333333333333211 1345677
Q ss_pred CCCC
Q 029453 131 IDIP 134 (193)
Q Consensus 131 ~Dl~ 134 (193)
.|-.
T Consensus 250 lDGh 253 (483)
T KOG0780|consen 250 LDGH 253 (483)
T ss_pred cccC
Confidence 7754
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.9e-05 Score=62.75 Aligned_cols=110 Identities=18% Similarity=0.235 Sum_probs=60.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--------Ccc-ccCCCCC---------------cceeEE-----------EeC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE--------RLV-QHQPTQY---------------PTSEEL-----------SIG 62 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~--------~~~-~~~~t~~---------------~~~~~~-----------~~~ 62 (193)
.+.-.++|+|++|+||||++..|... +.. ....+.. ...... ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 35668999999999999999887531 110 0000100 000000 113
Q ss_pred CeEEEEEEcCChhhhHHhHHh---hhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKD---YYA--KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~---~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
+.++.++||+|.......... .+. .....++|++.+.. ...+...+..+.. ..+.-+|+||.|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~-----~~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH-----AKPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh-----hCCeEEEEecCcCc
Confidence 578899999995432211100 011 12345677777643 3444444444421 24677999999985
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00018 Score=50.31 Aligned_cols=21 Identities=38% Similarity=0.390 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 029453 21 AKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~ 41 (193)
.+|+++|++|+|||||+..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999864
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.6e-05 Score=62.98 Aligned_cols=111 Identities=13% Similarity=0.067 Sum_probs=59.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---------cCCCCC---------------cceeEE-----------EeCCe
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ---------HQPTQY---------------PTSEEL-----------SIGKI 64 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~---------~~~t~~---------------~~~~~~-----------~~~~~ 64 (193)
.-.++|+|+.||||||.+..+.+..... ...+.. ...... ...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 3478999999999999999886432100 000110 000000 12356
Q ss_pred EEEEEEcCChh----hhHHhHHhh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 65 KFKAFDLGGHQ----MARRVWKDY--YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 65 ~~~~~D~~g~~----~~~~~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
++.++||+|.. ......... ....+-.++|+|++.. .+.+......+.... .-.+-=+++||.|..
T Consensus 265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~--~~~i~glIlTKLDEt 336 (767)
T PRK14723 265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGA--GEDVDGCIITKLDEA 336 (767)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcc--cCCCCEEEEeccCCC
Confidence 89999999932 111222221 1245678899999753 223333333331110 002346779999986
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.86 E-value=8e-05 Score=58.05 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=59.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCc-ccc--------CCCCCc---------------ceeE-----------EEeCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERL-VQH--------QPTQYP---------------TSEE-----------LSIGK 63 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~-~~~--------~~t~~~---------------~~~~-----------~~~~~ 63 (193)
+.-.|+++||.|+||||-+-.|..... ... ..|+.. .... ....+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 467899999999999999887743322 000 001100 0000 01135
Q ss_pred eEEEEEEcCChhhhHH----hHHhhhccC--CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 64 IKFKAFDLGGHQMARR----VWKDYYAKV--DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~~----~~~~~~~~~--d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
+++.++||.|...... .+..++..+ .-.-+|++++.. ...+...+..+.. -+ .--+++||.|..
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~----~~-i~~~I~TKlDET 351 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL----FP-IDGLIFTKLDET 351 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc----CC-cceeEEEccccc
Confidence 7899999999554332 233333322 334456666544 3455555555521 11 225668999975
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00011 Score=58.68 Aligned_cols=108 Identities=18% Similarity=0.111 Sum_probs=58.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc-------cc--cCCCCC---------------cceeE-----------EEeCCe
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERL-------VQ--HQPTQY---------------PTSEE-----------LSIGKI 64 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~-------~~--~~~t~~---------------~~~~~-----------~~~~~~ 64 (193)
.-.++|+|++||||||++-.+..... .. ...+.. ..... -...+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 34799999999999998877642211 10 000100 00000 011357
Q ss_pred EEEEEEcCChhhhH----HhHHhhhc---cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 65 KFKAFDLGGHQMAR----RVWKDYYA---KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 65 ~~~~~D~~g~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
++.++||+|..... ..+...+. ...-..+|++++-. ...+...+..+- . .+ +--+++||.|..
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~-~---~~-~~~vI~TKlDet 370 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFS-R---LP-LDGLIFTKLDET 370 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhC-C---CC-CCEEEEeccccc
Confidence 89999999954221 22233333 23466788888644 234444444441 1 11 236889999985
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00029 Score=56.19 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=43.5
Q ss_pred CeEEEEEEcCChhhh----HHhHHhh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-C
Q 029453 63 KIKFKAFDLGGHQMA----RRVWKDY--YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP-Y 135 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~-~ 135 (193)
++++.++||+|.... -...... .-.++.+++|+|+... +........+... -...-+|+||.|.. +
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~----~~i~giIlTKlD~~~r 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEA----LGLTGVILTKLDGDAR 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhh----CCCCEEEEeCccCccc
Confidence 467899999994321 1111111 1256788999998754 3333444444221 11235777999965 3
Q ss_pred CCCHHHHHHhhCCC
Q 029453 136 AASEDELRYHMGLT 149 (193)
Q Consensus 136 ~~~~~~~~~~~~~~ 149 (193)
....-.+....+.+
T Consensus 256 gG~alsi~~~~~~P 269 (433)
T PRK10867 256 GGAALSIRAVTGKP 269 (433)
T ss_pred ccHHHHHHHHHCcC
Confidence 33344455555444
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.8e-05 Score=50.45 Aligned_cols=97 Identities=20% Similarity=0.238 Sum_probs=51.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCC------------------------hh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGG------------------------HQ 75 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g------------------------~~ 75 (193)
.--+.+.|++|+|||++++++............ ...+..++.+. ..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 73 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKN----------HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSD 73 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC----------CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC----------CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHH
Confidence 345789999999999999998764322100000 11111222211 12
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhCCCCCCCcEEEEeeC
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYDKE-RFSESKRELDALLSDEALADVPFLILGNK 130 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK 130 (193)
.........+......++++|-.+.= + ......+..+.+ ..+.+++++++-
T Consensus 74 ~l~~~~~~~l~~~~~~~lviDe~~~l~~-~~~l~~l~~l~~---~~~~~vvl~G~~ 125 (131)
T PF13401_consen 74 ELRSLLIDALDRRRVVLLVIDEADHLFS-DEFLEFLRSLLN---ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHHHCTEEEEEEETTHHHHT-HHHHHHHHHHTC---SCBEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCeEEEEeChHhcCC-HHHHHHHHHHHh---CCCCeEEEEECh
Confidence 22233344455666688899976542 1 233444444433 467888888864
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00017 Score=55.90 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.-..+.|.-|||||||++++...
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 34778999999999999999743
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00017 Score=54.19 Aligned_cols=87 Identities=17% Similarity=0.087 Sum_probs=58.6
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH--HHHhhCCCccccCCCcccCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE--LRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 162 (193)
..+.|-+++|+.+.+|+--......+..+... .++..++++||+||.......+ ....+...
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~------------- 140 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDI------------- 140 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhC-------------
Confidence 34578888888888875333333333333333 5777888899999986555442 32233211
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
..+++.+|++++.|++++.+++...
T Consensus 141 ----gy~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 141 ----GYPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred ----CeeEEEecCcCcccHHHHHHHhcCC
Confidence 2589999999999999999998754
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.8e-05 Score=54.33 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=50.8
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCc----cccCCC--cccCCC
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTN----FTTGKG--NVNLDN 162 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~ 162 (193)
|++++|+|+.++. ......+...+. ....++|+++|+||+|+.+.....++...+.... +..... ...+..
T Consensus 1 DvVl~VvDar~p~--~~~~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
T cd04178 1 DVILEVLDARDPL--GCRCPQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQ 77 (172)
T ss_pred CEEEEEEECCCCC--CCCCHHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhh
Confidence 7899999998762 111122222211 1114689999999999975444444444443322 111000 000000
Q ss_pred CC--CccEEEEEEeeecCCChhHHHHhhhh
Q 029453 163 TN--VRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 163 ~~--~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
.. ........+|+..+.|.+++++.+.+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 107 (172)
T cd04178 78 KSVKVEAASADLLRSSVCFGADCLLKLLKN 107 (172)
T ss_pred cccccchhhhhhhhhccccCHHHHHHHHHH
Confidence 00 00122344577788888888777644
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=6.6e-05 Score=59.84 Aligned_cols=109 Identities=25% Similarity=0.146 Sum_probs=59.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC-----Ccc--ccCCCC---------------CcceeEE---------------Ee
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE-----RLV--QHQPTQ---------------YPTSEEL---------------SI 61 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~-----~~~--~~~~t~---------------~~~~~~~---------------~~ 61 (193)
+...|+++|++|+||||++..+... ... ....+. +...... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 4668999999999999999887421 000 000000 0000000 00
Q ss_pred CCeEEEEEEcCChhhhHHhH----Hh--hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 62 GKIKFKAFDLGGHQMARRVW----KD--YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~----~~--~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
...++.++||+|........ .. ..-.+|.+++|+|++... ........+... -..--+++||.|..
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~----l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA----VGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc----CCCCEEEEecccCC
Confidence 13478999999954332111 11 123578999999997652 333333333111 11246778999975
|
|
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=2e-05 Score=56.69 Aligned_cols=67 Identities=22% Similarity=0.329 Sum_probs=38.4
Q ss_pred CeEEEEEEcCChhhh-------HHhHHhhhcc---CCEEEEEEeC---CChhhHHH-HHHHHHHHHhCCCCCCCcEEEEe
Q 029453 63 KIKFKAFDLGGHQMA-------RRVWKDYYAK---VDAVVYLIDA---YDKERFSE-SKRELDALLSDEALADVPFLILG 128 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~-------~~~~~~~~~~---~d~ii~v~d~---~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~ 128 (193)
...+.+.|+|||-++ ..... .+++ .-+++-++|. +++..+-. ...-+..++. ...|-+=|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~-~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~----melphVNvl 170 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFR-KLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH----MELPHVNVL 170 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHH-HHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh----hcccchhhh
Confidence 457889999997543 11211 2222 3355666676 35544332 2233333332 467888999
Q ss_pred eCCCCC
Q 029453 129 NKIDIP 134 (193)
Q Consensus 129 nK~Dl~ 134 (193)
.|+|+.
T Consensus 171 SK~Dl~ 176 (290)
T KOG1533|consen 171 SKADLL 176 (290)
T ss_pred hHhHHH
Confidence 999985
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.2e-05 Score=60.61 Aligned_cols=69 Identities=17% Similarity=0.325 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCCeEEEEEEcCCh
Q 029453 4 VDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~ 74 (193)
|..+.-+ +++-..++.+.|+|+|.||+||||++|.|-..+.+...|-.+.+. .++.+ ...+-++|+||.
T Consensus 292 I~llRQf-~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL-mkrIfLIDcPGv 362 (572)
T KOG2423|consen 292 IQLLRQF-AKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL-MKRIFLIDCPGV 362 (572)
T ss_pred HHHHHHH-HhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH-HhceeEecCCCc
Confidence 3344333 345567799999999999999999999998888766555333321 12222 245678999993
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00078 Score=45.63 Aligned_cols=67 Identities=22% Similarity=0.333 Sum_probs=38.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCe-EEEEEE-cC-ChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKI-KFKAFD-LG-GHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~D-~~-g~~~~~~~~~~~~~~~d~ii~ 93 (193)
+.-.++++|++|+|||||++.+.+.... ....+.+++. .+.+.. .. |+.+........+.+++.+++
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~--------~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illl 94 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP--------DEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLL 94 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC--------CceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3447899999999999999999875421 2233333332 222221 33 344334444555666765544
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=2.2e-05 Score=57.10 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV 46 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~ 46 (193)
-|+++|++|||||||+|.+.+-...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4899999999999999999765543
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.4e-05 Score=56.34 Aligned_cols=72 Identities=21% Similarity=0.291 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhCC-CCcccEEEEEcCCCCCHHHHHHHHhcCCc-----cccCCCCC---cceeEEEeCC-eEEEEEEcC
Q 029453 3 LVDWFYGILVSLGL-WQKEAKILFLGLDNSGKTTLLHMLKDERL-----VQHQPTQY---PTSEELSIGK-IKFKAFDLG 72 (193)
Q Consensus 3 ~~~~~~~~~~~~~~-~~~~~~i~i~G~~~~GKssl~~~l~~~~~-----~~~~~t~~---~~~~~~~~~~-~~~~~~D~~ 72 (193)
+..|+..-+.+... .+.++.+.|+|.||+|||||+|.+..... .......+ ...+.+.+.+ ..+-++|||
T Consensus 125 il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTP 204 (335)
T KOG2485|consen 125 ILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTP 204 (335)
T ss_pred HHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCC
Confidence 45666665555555 66899999999999999999998743221 12221111 1222344443 357788999
Q ss_pred Ch
Q 029453 73 GH 74 (193)
Q Consensus 73 g~ 74 (193)
|.
T Consensus 205 Gi 206 (335)
T KOG2485|consen 205 GI 206 (335)
T ss_pred Cc
Confidence 93
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00017 Score=56.21 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.-.++++|+.||||||++..+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999885
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=2.9e-05 Score=50.84 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|+|.|++||||||+++.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
|
... |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00037 Score=53.00 Aligned_cols=127 Identities=18% Similarity=0.158 Sum_probs=68.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-------cCCCC------------------------CcceeEEE-----
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-------HQPTQ------------------------YPTSEELS----- 60 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-------~~~t~------------------------~~~~~~~~----- 60 (193)
..+.+-++++|-.|+||||-+-.+....... -..|. +.....+-
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 4568899999999999999998874211100 00010 11111111
Q ss_pred ---eCCeEEEEEEcCChhhh-------HHhHHhhhcc-----CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEE
Q 029453 61 ---IGKIKFKAFDLGGHQMA-------RRVWKDYYAK-----VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFL 125 (193)
Q Consensus 61 ---~~~~~~~~~D~~g~~~~-------~~~~~~~~~~-----~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi 125 (193)
-.+.++.++||.|.-.- ..-..+.++. ++=+++++|++-++.--...+.+.+... ---
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~-------l~G 288 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG-------LDG 288 (340)
T ss_pred HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC-------Cce
Confidence 13688999999993211 1111122233 3348888899876332233333444422 125
Q ss_pred EEeeCCCCC-CCCCHHHHHHhhCCCc
Q 029453 126 ILGNKIDIP-YAASEDELRYHMGLTN 150 (193)
Q Consensus 126 iv~nK~Dl~-~~~~~~~~~~~~~~~~ 150 (193)
+++||.|-. +....-.+...++.+-
T Consensus 289 iIlTKlDgtAKGG~il~I~~~l~~PI 314 (340)
T COG0552 289 IILTKLDGTAKGGIILSIAYELGIPI 314 (340)
T ss_pred EEEEecccCCCcceeeeHHHHhCCCE
Confidence 778999965 3444434555555444
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00052 Score=47.51 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|+|||||++.+.+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578999999999999999998754
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0003 Score=52.08 Aligned_cols=111 Identities=16% Similarity=0.220 Sum_probs=65.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCC-----CCCcceeEEEe--CC--eEEEEEEcCChhh-------------
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-----TQYPTSEELSI--GK--IKFKAFDLGGHQM------------- 76 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~~~~~~~--~~--~~~~~~D~~g~~~------------- 76 (193)
-.++|.-+|..|.|||||++.+++..+..... +......+... ++ ..+.++||.|...
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 45899999999999999999999888764332 22222222222 23 4688999998221
Q ss_pred -hHHhHHhhh---------------ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 77 -ARRVWKDYY---------------AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 77 -~~~~~~~~~---------------~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
....+..|+ .+.++.+|.+..+. -++..+.-....-+. ...-+|-++-|.|-.
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld----skVNIIPvIAKaDti 189 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD----SKVNIIPVIAKADTI 189 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh----hhhhhHHHHHHhhhh
Confidence 112222222 24678888887753 224444332222222 245567777888853
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00036 Score=55.63 Aligned_cols=81 Identities=11% Similarity=0.048 Sum_probs=44.5
Q ss_pred CeEEEEEEcCChhhh----HHhHHhh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-C
Q 029453 63 KIKFKAFDLGGHQMA----RRVWKDY--YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP-Y 135 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~-~ 135 (193)
+.++.++||||.... -.....+ .-.++.+++|+|+... +........+.... ...-+++||.|.. +
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v----~i~giIlTKlD~~~~ 254 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL----GLTGVVLTKLDGDAR 254 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC----CCCEEEEeCccCccc
Confidence 467899999994322 1111111 2247888999998754 33344444442221 1246779999965 3
Q ss_pred CCCHHHHHHhhCCCc
Q 029453 136 AASEDELRYHMGLTN 150 (193)
Q Consensus 136 ~~~~~~~~~~~~~~~ 150 (193)
......+....+.+.
T Consensus 255 ~G~~lsi~~~~~~PI 269 (428)
T TIGR00959 255 GGAALSVRSVTGKPI 269 (428)
T ss_pred ccHHHHHHHHHCcCE
Confidence 333444555554443
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00043 Score=42.99 Aligned_cols=97 Identities=15% Similarity=0.035 Sum_probs=55.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHh-HHhhhccCCEEEEEEeCCChh
Q 029453 23 ILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRV-WKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~d~ii~v~d~~~~~ 101 (193)
+++.|..|+||||+...+...-.. .+.....+. ++.++|+++....... .......+|.++++++.....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~ 72 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALA 72 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhh
Confidence 678899999999999887543211 111111111 7889999986433221 133456789999999886543
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEee
Q 029453 102 RFSESKRELDALLSDEALADVPFLILGN 129 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~n 129 (193)
....................+..+++|
T Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 73 -VLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred -HHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 333333322222222224455555554
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00073 Score=54.99 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 7 FYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+..|...+........+.+.|++|+||||+++.+...
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3334333333333567999999999999999999764
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=4.5e-05 Score=53.05 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.||.|+|++|||||||.+.+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998754
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00017 Score=53.93 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=61.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCc-----c---ccCC----------C----CCcceeE-E-------------EeC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERL-----V---QHQP----------T----QYPTSEE-L-------------SIG 62 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~-----~---~~~~----------t----~~~~~~~-~-------------~~~ 62 (193)
+.-+++++|++|+||||++..+...-. . ...+ + .+..... . ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 446999999999999999988753211 0 0000 0 0000000 0 012
Q ss_pred CeEEEEEEcCChhhh----HHhHHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 63 KIKFKAFDLGGHQMA----RRVWKDYY--AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
+.++.++||+|.... -..+...+ ...+-+++|+|++.. .+.+......+. . -.+--+++||.|...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~-~----~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFK-D----IHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhC-C----CCCCEEEEEeecCCC
Confidence 468899999995421 11122222 245678999998743 134444444442 1 233467899999863
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=5e-05 Score=53.07 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+|+|+|++|||||||++.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.63 E-value=4.6e-05 Score=55.14 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
.=-++|+||+|||||||+|.+.+-..
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 33689999999999999999876553
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.001 Score=52.36 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=60.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC---------ccc--cCCCC---------------CcceeEE-----------Ee
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER---------LVQ--HQPTQ---------------YPTSEEL-----------SI 61 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~---------~~~--~~~t~---------------~~~~~~~-----------~~ 61 (193)
....++++|++|+||||.+..+.... ... ...+. +...... ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 34589999999999999998875311 000 00010 0010000 11
Q ss_pred CCeEEEEEEcCChhhhH----HhHHhhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 62 GKIKFKAFDLGGHQMAR----RVWKDYYAK---VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~----~~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.+..+.++||+|..... ......+.. ..-.++|+|++.. ...+...+..+.. -.+--+++||.|..
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCC
Confidence 35789999999943221 112222332 2357899999865 2344444444421 12446789999986
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.3e-05 Score=53.20 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.||.|+|+|||||||++..+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999865
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=8.1e-05 Score=53.16 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=23.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV 46 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~ 46 (193)
+.=.++++||+|||||||++.+.+-+..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~ 54 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEP 54 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCC
Confidence 4447899999999999999999876543
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00017 Score=56.96 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=59.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-c-----cc--cCCC---------------CCcceeEE----------EeCCeEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER-L-----VQ--HQPT---------------QYPTSEEL----------SIGKIKF 66 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~-~-----~~--~~~t---------------~~~~~~~~----------~~~~~~~ 66 (193)
...++++|++||||||++.++.... . .. ...+ .+...... .-.+.++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4569999999999999999986321 0 00 0000 00001000 0135688
Q ss_pred EEEEcCChhhh----HHhHHhhhc-----cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 67 KAFDLGGHQMA----RRVWKDYYA-----KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 67 ~~~D~~g~~~~----~~~~~~~~~-----~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.++||+|.... ...+...++ ...-.++|+|++... ..+......+ .. --+--+++||.|..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~----~~~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ES----LNYRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cC----CCCCEEEEEcccCC
Confidence 99999995421 112222222 234678899997652 3333333333 22 12346789999986
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0001 Score=56.56 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
-++++||+||||||+++.+.+-..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999987654
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00031 Score=48.95 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=33.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
+..-++|+|++|||||||++++...-. ..+.....+.+.+..+.+ |.+|-+.+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~-----~~g~~vg~Ik~~~~~~~~-d~~g~Ds~ 57 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC-----ARGIRPGLIKHTHHDMDV-DKPGKDSY 57 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh-----hcCCeEEEEEEcCCCccc-CCCCcHHH
Confidence 455789999999999999999875421 112233555554444433 77775433
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0012 Score=43.46 Aligned_cols=21 Identities=43% Similarity=0.523 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998864
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0006 Score=54.99 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.-||+|+|.+||||||+++.++
T Consensus 377 kGekVaIvG~nGsGKSTilr~Ll 399 (591)
T KOG0057|consen 377 KGEKVAIVGSNGSGKSTILRLLL 399 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45699999999999999999985
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00017 Score=55.82 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=49.0
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCc
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTN 150 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~ 150 (193)
|...+...++.+|++|.|+|+.||.+-.... .-..++.. ..++..|+|+||+|+.+.+..++|..++....
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~-vE~~V~~~--~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ 206 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPE-VEEAVLQA--HGNKKLILVLNKIDLVPREVVEKWLVYLRREG 206 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCCCCChh-HHHHHHhc--cCCceEEEEeehhccCCHHHHHHHHHHHHhhC
Confidence 4444555667899999999999984432221 11222212 24589999999999999888888888877555
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00014 Score=52.77 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=+++++|.+|||||||++.+.+-.
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCcc
Confidence 389999999999999999998743
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.52 E-value=9.2e-05 Score=49.54 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.=.++|+|++|||||||++.+.+..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 34478999999999999999998755
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0017 Score=49.02 Aligned_cols=114 Identities=15% Similarity=0.213 Sum_probs=67.1
Q ss_pred HHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChh---hh----
Q 029453 5 DWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQ---MA---- 77 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~---~~---- 77 (193)
+-+..++. .+...+...++++|++|-|||+++++|.........+. ...+++..+.+|... .+
T Consensus 47 ~~L~~Ll~-~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~---------~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 47 DRLEELLE-YPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED---------AERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred HHHHHHHh-CCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC---------CccccEEEEecCCCCChHHHHHHH
Confidence 33444443 46677889999999999999999999987553322111 112355566665311 11
Q ss_pred -----------------HHhHHhhhccCCEEEEEEeCCCh---hhH---HHHHHHHHHHHhCCCCCCCcEEEEeeCC
Q 029453 78 -----------------RRVWKDYYAKVDAVVYLIDAYDK---ERF---SESKRELDALLSDEALADVPFLILGNKI 131 (193)
Q Consensus 78 -----------------~~~~~~~~~~~d~ii~v~d~~~~---~~~---~~~~~~~~~~~~~~~~~~~pviiv~nK~ 131 (193)
.......++...+=++++|--+- .+. ..+...+..+. +.-++|++.++++-
T Consensus 117 L~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~---NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 117 LEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG---NELQIPIVGVGTRE 190 (302)
T ss_pred HHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh---hccCCCeEEeccHH
Confidence 12222445667788888886431 111 22334444443 33689999998753
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00019 Score=55.57 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 3 LVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
++.|++.++.. ...++.-++++||||+|||||++.+..
T Consensus 63 lv~~l~~~a~g--~~~~r~il~L~GPPGsGKStla~~La~ 100 (361)
T smart00763 63 FVNYFKSAAQG--LEERKQILYLLGPVGGGKSSLVECLKR 100 (361)
T ss_pred HHHHHHHHHhc--CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 56777776632 234555689999999999999999864
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00018 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
-++++|++|||||||+|.+.+-
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcC
Confidence 5789999999999999998753
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00012 Score=41.75 Aligned_cols=20 Identities=40% Similarity=0.605 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
..+|.|+.||||||+++.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999874
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0009 Score=45.97 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029453 23 ILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~ 42 (193)
+.|.|++|+|||+++..+..
T Consensus 3 l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 68999999999999998864
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=9.9e-05 Score=51.43 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
..=.++|+|++|+|||||+|.+.+=.
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhcc
Confidence 33479999999999999999987544
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00012 Score=43.08 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
|++.|++||||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00016 Score=52.26 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
-|+++|++|||||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999987
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0011 Score=44.53 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=58.8
Q ss_pred EEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCC
Q 029453 24 LFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD 99 (193)
Q Consensus 24 ~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 99 (193)
..-|.+|+|||++.-.+...-...... ..+++...+ ..++.++|+|+.... .....+..+|.++++++.+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~---~yd~VIiD~p~~~~~--~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL---DYDYIIIDTGAGISD--NVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC---CCCEEEEECCCCCCH--HHHHHHHhCCeEEEEcCCCh
Confidence 345788999999987764221100000 001111111 178899999875322 22356778999999999864
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q 029453 100 KERFSESKRELDALLSDEALADVPFLILGNKIDI 133 (193)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl 133 (193)
. ++......+..+.... ...++.+++|+++.
T Consensus 79 ~-s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 79 T-SITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred h-HHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 3 3444444444443221 35678899999974
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00019 Score=55.38 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
=++++||+||||||+++.+.+=+.
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999976554
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00011 Score=49.40 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029453 23 ILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~ 42 (193)
|.++|+|||||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999873
|
... |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0023 Score=42.62 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
....+.+.|++|+|||++++.+...-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 44579999999999999999987643
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0038 Score=42.83 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++|+|++|+|||||++.+.+..
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998754
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00011 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=19.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
++--.+++||+|||||||++.+.
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHH
Confidence 44567999999999999999875
|
|
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00061 Score=50.55 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029453 23 ILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~ 42 (193)
|.++|.|||||||+++.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999998863
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0015 Score=54.45 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=22.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-+++++|++|||||||++.+.+-.
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55689999999999999999998754
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0009 Score=52.64 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=60.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC------Ccc-----ccCC----------------CCCcc--eeE----------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE------RLV-----QHQP----------------TQYPT--SEE---------- 58 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~------~~~-----~~~~----------------t~~~~--~~~---------- 58 (193)
+++..|.++|-.||||||.+-.+... +.. .+.| .+... ...
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 35678999999999999998876411 000 0000 00000 000
Q ss_pred EEeCCeEEEEEEcCChhhhHH-hHHh-----hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCC
Q 029453 59 LSIGKIKFKAFDLGGHQMARR-VWKD-----YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKID 132 (193)
Q Consensus 59 ~~~~~~~~~~~D~~g~~~~~~-~~~~-----~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 132 (193)
......++.++||.|...... +... ..-++|=+++|+|+.-++.-......+.+-+. --=+++||.|
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~-------itGvIlTKlD 250 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALG-------ITGVILTKLD 250 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcC-------CceEEEEccc
Confidence 011246899999999433222 1111 12368999999999876433333332222211 1246789999
Q ss_pred CC
Q 029453 133 IP 134 (193)
Q Consensus 133 l~ 134 (193)
-.
T Consensus 251 Gd 252 (451)
T COG0541 251 GD 252 (451)
T ss_pred CC
Confidence 75
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00022 Score=47.90 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
|+++|++||||||+++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999865
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.001 Score=53.31 Aligned_cols=125 Identities=15% Similarity=0.136 Sum_probs=75.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCc------------ccc---CCCCCccee--EEE------------------e
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERL------------VQH---QPTQYPTSE--ELS------------------I 61 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~------------~~~---~~t~~~~~~--~~~------------------~ 61 (193)
..+-=+..++....-|||||-..+....- ..+ +..++.+.. .++ .
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 33344677888999999999999853221 100 001111111 111 1
Q ss_pred CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC---CCCC
Q 029453 62 GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP---YAAS 138 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~---~~~~ 138 (193)
+++-+.++|.|||-.|.+...+.++-.|+.+.|+|..++--.+.-. .+...+.. .+.-+++.||+|.. -...
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTET-VLrQA~~E----RIkPvlv~NK~DRAlLELq~~ 170 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET-VLRQAIAE----RIKPVLVMNKMDRALLELQLS 170 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHH-HHHHHHHh----hccceEEeehhhHHHHhhcCC
Confidence 2577899999999999998888899999999999987652222222 22222222 33346679999954 3445
Q ss_pred HHHHHHhh
Q 029453 139 EDELRYHM 146 (193)
Q Consensus 139 ~~~~~~~~ 146 (193)
.+++.+.+
T Consensus 171 ~EeLyqtf 178 (842)
T KOG0469|consen 171 QEELYQTF 178 (842)
T ss_pred HHHHHHHH
Confidence 55544443
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00013 Score=53.91 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.--++++||.|||||||++.+.+-
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 446899999999999999999753
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0025 Score=40.42 Aligned_cols=81 Identities=14% Similarity=0.053 Sum_probs=47.1
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCccccCCCCCcceeEEEe-CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCCh
Q 029453 23 ILFLG-LDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSI-GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 23 i~i~G-~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 100 (193)
|++.| ..|+||||+...+...-.... .....+.. ...++.++|+|+..... ....+..+|.++++++.+..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~-----~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRG-----KRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCC-----CcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCHH
Confidence 56666 669999999877643221110 11111111 11678899999864322 23566779999999988643
Q ss_pred hhHHHHHHHHH
Q 029453 101 ERFSESKRELD 111 (193)
Q Consensus 101 ~~~~~~~~~~~ 111 (193)
++......+.
T Consensus 75 -s~~~~~~~~~ 84 (104)
T cd02042 75 -DLDGLEKLLE 84 (104)
T ss_pred -HHHHHHHHHH
Confidence 3444444443
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00017 Score=51.50 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
-++|+||.|+|||||++.+++.-.
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccC
Confidence 578999999999999999987654
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00037 Score=51.19 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.=.++++|++|||||||++.+.+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478999999999999999998754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00035 Score=50.59 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478999999999999999998754
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0002 Score=49.36 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+.=.++++||+|||||||++.+..-
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhc
Confidence 3347899999999999999998753
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00011 Score=50.86 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999754
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00031 Score=49.28 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCc
Q 029453 23 ILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
+.++|++|||||||++.+.+...
T Consensus 31 ~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 31 VFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred EEEECCCCCCHHHHHHHHHhhhc
Confidence 67899999999999999987553
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00021 Score=51.58 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=23.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.+...|+|.|++|||||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 57789999999999999999998653
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0002 Score=51.87 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~ 41 (193)
..+|+|+|+|||||||+.+.+.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999985
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0002 Score=51.59 Aligned_cols=26 Identities=31% Similarity=0.264 Sum_probs=22.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.+..-|+|+|++|||||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45568999999999999999998753
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00019 Score=50.65 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.+|+|+|.+||||||+.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998743
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00019 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.-.++++|++|||||||++.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 455899999999999999998863
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00019 Score=45.80 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.-.++++|++|||||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3468999999999999999976
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00023 Score=49.99 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..-|+|.|++||||||+++++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467899999999999999998743
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00048 Score=53.03 Aligned_cols=94 Identities=23% Similarity=0.269 Sum_probs=64.4
Q ss_pred EcCChh-hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCC
Q 029453 70 DLGGHQ-MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGL 148 (193)
Q Consensus 70 D~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~ 148 (193)
+.||+. ++.......+..+|+++.|+|+.++. ..-...+..+. .+.|.++|+||+|+.+.....++...+..
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~--~s~~~~l~~~v-----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~ 88 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPL--GTRNPELERIV-----KEKPKLLVLNKADLAPKEVTKKWKKYFKK 88 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccc--cccCccHHHHH-----ccCCcEEEEehhhcCCHHHHHHHHHHHHh
Confidence 457764 45556677788999999999999874 33344455554 24566999999999876666667666655
Q ss_pred CccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHH
Q 029453 149 TNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFK 186 (193)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 186 (193)
.. ....+.++++.+.+...+..
T Consensus 89 ~~----------------~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 89 EE----------------GIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred cC----------------CCccEEEEeecccCccchHH
Confidence 43 12456777777776666653
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00048 Score=49.77 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34479999999999999999998754
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0025 Score=40.80 Aligned_cols=95 Identities=16% Similarity=0.031 Sum_probs=55.0
Q ss_pred EcCCCCCHHHHHHHHhcCCccc-cCC----CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCCh
Q 029453 26 LGLDNSGKTTLLHMLKDERLVQ-HQP----TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 26 ~G~~~~GKssl~~~l~~~~~~~-~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 100 (193)
-+..|+||||+...+...-... ... ..+++. +.++.++|+|+..... ....+..+|.++++++.+..
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~------~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~~ 77 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF------GDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDLP 77 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC------CCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCChH
Confidence 3567899999887764222111 100 011111 1278999998864332 23456789999999988654
Q ss_pred hhHHHHHHHHHHHHhCCCCC-CCcEEEEeeC
Q 029453 101 ERFSESKRELDALLSDEALA-DVPFLILGNK 130 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~-~~pviiv~nK 130 (193)
++......+..+... ... ..++.+|+|+
T Consensus 78 -s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 78 -SIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred -HHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 355555555555432 222 4567777775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00018 Score=51.44 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
|+|.|++|||||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998653
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00022 Score=50.50 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.++|+|++||||||+++.+.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999996643
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00054 Score=50.25 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 33478999999999999999998764
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00056 Score=50.11 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...+..-++|.|++|||||||++.+.+
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999998864
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00023 Score=51.65 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 44478999999999999999998754
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00024 Score=51.29 Aligned_cols=26 Identities=38% Similarity=0.554 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44478999999999999999998754
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0038 Score=49.88 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-+++|..|+|||||++.+++-.
T Consensus 33 HaLLGENGAGKSTLm~iL~G~~ 54 (501)
T COG3845 33 HALLGENGAGKSTLMKILFGLY 54 (501)
T ss_pred EEEeccCCCCHHHHHHHHhCcc
Confidence 3789999999999999998644
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00024 Score=51.01 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=22.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999998754
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00024 Score=51.23 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+. .++++|++|||||||++.+.+-.
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 35 89999999999999999998754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0002 Score=52.07 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029453 23 ILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~ 42 (193)
|+|.|++|||||||++.+.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 78999999999999999864
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00026 Score=50.21 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34479999999999999999998754
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00023 Score=49.98 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998653
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00026 Score=51.16 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999998754
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00025 Score=46.62 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998653
|
... |
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00028 Score=49.13 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
+|++.|++|+||||+++++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999763
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 193 | ||||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 2e-59 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 1e-58 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 4e-58 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 7e-58 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 2e-57 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 1e-51 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 8e-20 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 1e-19 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 1e-19 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 2e-19 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 3e-19 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 6e-19 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 7e-19 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 1e-18 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 1e-18 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 2e-18 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 7e-18 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 2e-17 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 2e-17 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 3e-17 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 5e-17 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 6e-17 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 7e-17 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 7e-17 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 9e-17 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 1e-16 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 1e-16 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 1e-16 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 2e-16 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 3e-16 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 3e-16 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 6e-16 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 6e-16 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 7e-16 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 7e-16 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 7e-16 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 8e-16 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 8e-16 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 1e-15 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 2e-15 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 3e-15 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 4e-15 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 5e-15 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 5e-15 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 7e-15 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 7e-15 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 9e-15 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 2e-14 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 2e-14 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 4e-14 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 2e-13 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 6e-13 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 8e-11 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 4e-04 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 5e-04 |
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 268 bits (688), Expect = 5e-93
Identities = 112/191 (58%), Positives = 145/191 (75%)
Query: 2 FLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSI 61
++ F +L LGL++K K++FLGLDN+GKTTLLHMLKD+RL QH PT +PTSEEL+I
Sbjct: 7 WIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTI 66
Query: 62 GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALAD 121
+ F FDLGGH ARRVWK+Y ++ +V+L+D D ER ESK ELD+L++DE +A+
Sbjct: 67 AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIAN 126
Query: 122 VPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGY 181
VP LILGNKID P A SE+ LR GL TTGKG+V+L N RPLEVFMCS++++ GY
Sbjct: 127 VPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGY 186
Query: 182 GEGFKWLSQYI 192
GEGF+W++QYI
Sbjct: 187 GEGFRWMAQYI 197
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 262 bits (672), Expect = 1e-90
Identities = 113/190 (59%), Positives = 138/190 (72%), Gaps = 5/190 (2%)
Query: 3 LVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG 62
+ WF +L SLGLW K K+LFLGLDN+GKTTLLHMLK++RL QPT +PTSEEL+IG
Sbjct: 6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIG 65
Query: 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADV 122
IKF FDLGGH ARR+WKDY+ +V+ +V+L+DA D ERF E++ ELDAL + L DV
Sbjct: 66 NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV 125
Query: 123 PFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYG 182
PF+ILGNKID P A SE ELR +GL N T + RP+EVFMCS+V + GY
Sbjct: 126 PFVILGNKIDAPNAVSEAELRSALGLLNTTGSQ-----RIEGQRPVEVFMCSVVMRNGYL 180
Query: 183 EGFKWLSQYI 192
E F+WLSQYI
Sbjct: 181 EAFQWLSQYI 190
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 2e-67
Identities = 62/190 (32%), Positives = 97/190 (51%), Gaps = 14/190 (7%)
Query: 6 WFYGILVSLGLW--QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK 63
W + +LGL ++ ++L LGLDN+GKT++L+ L +V PT E L
Sbjct: 6 WLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKN 65
Query: 64 IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP 123
I F+ +DLGG R W+ Y++ DAV+Y++D+ D++R +K EL ALL ++ L
Sbjct: 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL 125
Query: 124 FLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183
LI NK D+P AASE E+ +G+++ R + S G E
Sbjct: 126 LLIFANKQDLPDAASEAEIAEQLGVSSIMN------------RTWTIVKSSSKTGDGLVE 173
Query: 184 GFKWLSQYIK 193
G WL + ++
Sbjct: 174 GMDWLVERLR 183
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 188 bits (481), Expect = 5e-62
Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 12/178 (6%)
Query: 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQ 75
+E +IL LGLD +GKTT+L+ L+ +V PT E ++ +KF+ +DLGG
Sbjct: 3 HMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLT 62
Query: 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135
R W+ YY+ DAV+Y++D+ D++R SK EL A+L +E L ++ NK D+
Sbjct: 63 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122
Query: 136 AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
A + E+ +GL R ++F S + G E +WL + +K
Sbjct: 123 AMTSSEMANSLGLPALKD------------RKWQIFKTSATKGTGLDEAMEWLVETLK 168
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 6e-61
Identities = 64/193 (33%), Positives = 91/193 (47%), Gaps = 14/193 (7%)
Query: 1 MFLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELS 60
M F + L KE +IL LGLD +GKTT+L+ L+ +V +PT E LS
Sbjct: 1 MGN--IFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLS 58
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
+K +DLGG R W+ YYA AV++++D+ DK+R S + +EL +L +E L
Sbjct: 59 YKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQ 118
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
D L+ NK D P A S E+ + L R + S ++ G
Sbjct: 119 DAALLVFANKQDQPGALSASEVSKELNLVELKD------------RSWSIVASSAIKGEG 166
Query: 181 YGEGFKWLSQYIK 193
EG WL IK
Sbjct: 167 ITEGLDWLIDVIK 179
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 1e-57
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 12/179 (6%)
Query: 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGG 73
+ +E K++ +GLDN+GKTT+L+ +V PT EE+ I +F +D+GG
Sbjct: 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGG 74
Query: 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDI 133
+ R W YY + V+ ++D+ D+ER S ++ EL +L+ E L LI NK D+
Sbjct: 75 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134
Query: 134 PYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192
+ E+ + LT+ + C + G +G +W+ +
Sbjct: 135 KECMTVAEISQFLKLTSIKD------------HQWHIQACCALTGEGLCQGLEWMMSRL 181
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 2e-56
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 9 GILVSLGLW----QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKI 64
GIL + +W +E K++ +GLDN+GKTT+L+ +V PT EE+ I
Sbjct: 2 GILFT-RIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 60
Query: 65 KFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPF 124
+F +D+GG + R W YY + V+ ++D+ D+ER S ++ EL +L+ E L
Sbjct: 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120
Query: 125 LILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184
LI NK D+ + E+ + LT+ + C + G +G
Sbjct: 121 LIFANKQDVKECMTVAEISQFLKLTSIKD------------HQWHIQACCALTGEGLCQG 168
Query: 185 FKWLSQYIK 193
+W+ +K
Sbjct: 169 LEWMMSRLK 177
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 2e-55
Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 15/191 (7%)
Query: 3 LVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG 62
L+ + +E +IL LGLDN+GKTTLL L E + PTQ + +
Sbjct: 2 LLSILRKLK---SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ 58
Query: 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADV 122
K +D+GG + R W+ Y+ D ++Y+ID+ D++RF E+ +EL LL +E L+ V
Sbjct: 59 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCV 118
Query: 123 PFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYG 182
P LI NK D+ AA E+ + L R ++ CS + G
Sbjct: 119 PVLIFANKQDLLTAAPASEIAEGLNLHTIRD------------RVWQIQSCSALTGEGVQ 166
Query: 183 EGFKWLSQYIK 193
+G W+ + +
Sbjct: 167 DGMNWVCKNVN 177
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 8e-55
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 16/184 (8%)
Query: 14 LGLWQKEAKILFLGLDNSGKTTLLHMLK--DERLVQHQPTQYPTSEELSIGKIKFKAFDL 71
+ KE +L LGLDNSGKTT+++ LK + + PT + E+ + F FD+
Sbjct: 15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDM 74
Query: 72 GGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA--DVPFLILGN 129
G R +W+ YY + A++++ID+ D+ R +K ELD LL+ + +P L N
Sbjct: 75 SGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFAN 134
Query: 130 KIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLS 189
K+D+ A + ++ + L N +P + ++ G EG WL
Sbjct: 135 KMDLRDAVTSVKVSQLLCLENIKD------------KPWHICASDAIKGEGLQEGVDWLQ 182
Query: 190 QYIK 193
I+
Sbjct: 183 DQIQ 186
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 3e-53
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 12/184 (6%)
Query: 10 ILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAF 69
IL + ++E ++L LGLDN+GKTT+L E + PT + L K +
Sbjct: 8 ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIW 67
Query: 70 DLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGN 129
D+GG + R W++Y+ D +++++D+ D++R + +REL +LL +E LA LI N
Sbjct: 68 DVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFAN 127
Query: 130 KIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLS 189
K D+P A S + ++ + L + + + CS V G WL
Sbjct: 128 KQDLPGALSCNAIQEALELDSIRS------------HHWRIQGCSAVTGEDLLPGIDWLL 175
Query: 190 QYIK 193
I
Sbjct: 176 DDIS 179
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 7e-53
Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 12/185 (6%)
Query: 9 GILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKA 68
G L S +K+ +IL +GLD +GKTT+L+ LK +V PT E + I F
Sbjct: 18 GSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTV 77
Query: 69 FDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILG 128
+D+GG R +W+ Y+ +++++D+ D+ER ES EL +L ++ L D L+
Sbjct: 78 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFA 137
Query: 129 NKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWL 188
NK D+P A EL +GL + + R V + G +G WL
Sbjct: 138 NKQDMPNAMPVSELTDKLGLQHLRS------------RTWYVQATCATQGTGLYDGLDWL 185
Query: 189 SQYIK 193
S +
Sbjct: 186 SHELS 190
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 6e-52
Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 17/193 (8%)
Query: 6 WFYGILVSLGLW----QKEAKILFLGLDNSGKTTLLHMLK-DERLVQHQPTQYPTSEELS 60
+ S GL ++E ++ +GL SGKTT ++++ + PT +++
Sbjct: 4 SHHHHHHSSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT 63
Query: 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA 120
G + K +D+GG R +W+ Y V A+VY++DA D+E+ SK EL LL L
Sbjct: 64 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 123
Query: 121 DVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
+P L+LGNK D+P A E EL M L+ R + + S K
Sbjct: 124 GIPVLVLGNKRDLPGALDEKELIEKMNLSAIQD------------REICCYSISCKEKDN 171
Query: 181 YGEGFKWLSQYIK 193
+WL Q+ K
Sbjct: 172 IDITLQWLIQHSK 184
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 2e-50
Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 12/172 (6%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81
+IL +GLD +GKTT+L+ LK +V PT E + I F +D+GG R +W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE 141
+ Y+ +++++D+ D+ER +E++ EL +L+++ L D L+ NK D+P A + E
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121
Query: 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
+ +GL + R + G EG WLS ++
Sbjct: 122 ITDKLGLHSLRH------------RNWYIQATCATSGDGLYEGLDWLSNQLR 161
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 3e-46
Identities = 38/187 (20%), Positives = 74/187 (39%), Gaps = 13/187 (6%)
Query: 13 SLGLWQKEAK--ILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFD 70
+G+ QK + I+ G NSGKT+LL +L + + +Q P S G D
Sbjct: 3 HMGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGS-GVTLVD 61
Query: 71 LGGHQMARRVWKDYY----AKVDAVVYLID-AYDKERFSESKRELDALLSDEALAD---V 122
GH R DY V +++++D D ++ + + L +LS + +
Sbjct: 62 FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI 121
Query: 123 PFLILGNKIDIPYAASEDELRYHMG--LTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180
LI NK ++ A +++ + + + + E + + + +
Sbjct: 122 DILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQ 181
Query: 181 YGEGFKW 187
+GFK+
Sbjct: 182 STDGFKF 188
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 1e-45
Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 11/154 (7%)
Query: 5 DWFYGILVSL--GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG 62
+W L G + I+ G NSGKT+LL +L + + +Q P S G
Sbjct: 31 EWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDG 90
Query: 63 KIKFKAFDLGGHQMARRVWKDYY----AKVDAVVYLID-AYDKERFSESKRELDALLSDE 117
D GH R DY V +++++D D ++ + + L +LS
Sbjct: 91 S-GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSIT 149
Query: 118 ALAD---VPFLILGNKIDIPYAASEDELRYHMGL 148
+ + LI NK ++ A +++ +
Sbjct: 150 ESSCENGIDILIACNKSELFTARPPSKIKDALES 183
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 2e-42
Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 12/177 (6%)
Query: 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQM 76
+KE +IL +GLD +GKTT+L+ LK +V PT E + I F +D+GG
Sbjct: 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 221
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136
R +W+ Y+ +++++D+ D+ER +E++ EL +L+++ L D L+ NK D+P A
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281
Query: 137 ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
+ E+ +GL + R + G EG WLS ++
Sbjct: 282 MNAAEITDKLGLHSLRH------------RNWYIQATCATSGDGLYEGLDWLSNQLR 326
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-37
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 7/137 (5%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK---IKFKAFDLGGHQ 75
+ +LF+GL +SGKT L L + Q + +S + DL GH+
Sbjct: 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65
Query: 76 MAR-RVWKDYYAKVDAVVYLIDAYDKERF-SESKRELDALLSDEALA--DVPFLILGNKI 131
R ++ + + AVV+++D+ +R + L +L D LI NK
Sbjct: 66 SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 125
Query: 132 DIPYAASEDELRYHMGL 148
DI A S ++ +
Sbjct: 126 DIAMAKSAKLIQQQLEK 142
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 7e-35
Identities = 36/197 (18%), Positives = 64/197 (32%), Gaps = 38/197 (19%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERL-----------VQHQPTQY-----PTSEELSI 61
+ KI++ G SGKTT L + + + + T + E+
Sbjct: 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKG 71
Query: 62 GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSD----- 116
K +F + + G K VD +V++ D+ R + + + +
Sbjct: 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMRENLAEYG 130
Query: 117 EALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176
L DVP +I NK D+P A + +R + V
Sbjct: 131 LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE----------------GKFPVLEAVAT 174
Query: 177 RKMGYGEGFKWLSQYIK 193
G E K +S+ +
Sbjct: 175 EGKGVFETLKEVSRLVL 191
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 8e-22
Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 16 LWQKEAKILFLGLDNSGKTT----LLHMLKDERLVQHQPTQYPTSEELSI-GKIKFKAFD 70
+ +IL +GL SGK++ + H + + + T +++S + F+ +D
Sbjct: 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWD 75
Query: 71 LGGHQMARRVWKD---YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLIL 127
G D + A++Y+IDA D + ++ + + + D+ F +
Sbjct: 76 FPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVF 135
Query: 128 GNKID 132
+K+D
Sbjct: 136 IHKVD 140
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 1e-17
Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 11/135 (8%)
Query: 20 EAKILFLGLDNSGKTT----LLHMLKDERLVQHQPTQYPTSEEL-SIGKIKFKAFDLGGH 74
+K+L +G SGK++ + + T L +G + +D GG
Sbjct: 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ 62
Query: 75 Q-----MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA-DVPFLILG 128
+ + V ++++ D E + + AL + D +L
Sbjct: 63 DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122
Query: 129 NKIDIPYAASEDELR 143
+K+D+ +EL
Sbjct: 123 HKMDLVQLDKREELF 137
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 1e-13
Identities = 17/129 (13%), Positives = 35/129 (27%), Gaps = 19/129 (14%)
Query: 70 DLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLS----DEALADVPFL 125
G + VD +Y+ +A +R E +++ + P L
Sbjct: 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD-EFSHIMAMTDPAFGSSGRPLL 166
Query: 126 ILG-NKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184
+L L + + L P V G+ G
Sbjct: 167 VLSCISQGDVKRMPCFYLAHELHLNLLN-------------HPWLVQDTEAETLTGFLNG 213
Query: 185 FKWLSQYIK 193
+W+ + ++
Sbjct: 214 IEWILEEVE 222
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 4e-12
Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 8/117 (6%)
Query: 23 ILFLGLDNSGKTT----LLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78
+L +G+ GK++ + H ++ + + T P+ E S I +L G
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYF 60
Query: 79 RVWKD---YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKID 132
D + V A+VY+ID+ D+ + + + + + + +L +K+D
Sbjct: 61 EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVD 117
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 60.9 bits (147), Expect = 1e-11
Identities = 17/129 (13%), Positives = 35/129 (27%), Gaps = 19/129 (14%)
Query: 70 DLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLS----DEALADVPFL 125
G + VD +Y+ +A +R E +++ + P L
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD-EFSHIMAMTDPAFGSSGRPLL 251
Query: 126 ILG-NKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184
+L L + + L P V G+ G
Sbjct: 252 VLSCISQGDVKRMPCFYLAHELHLNLLN-------------HPWLVQDTEAETLTGFLNG 298
Query: 185 FKWLSQYIK 193
+W+ + ++
Sbjct: 299 IEWILEEVE 307
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 9e-08
Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 20/128 (15%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-------------PTQYPTSEELSIGKIK 65
+E K+ +G +GKT+LL L E + P + + +
Sbjct: 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL 99
Query: 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALA-DVPF 124
F +D GG ++ + + + VY++ D S L + E P
Sbjct: 100 FHFWDFGGQEIMHASHQFFMT--RSSVYML-LLDSRTDSNKHYWLRHI---EKYGGKSPV 153
Query: 125 LILGNKID 132
+++ NKID
Sbjct: 154 IVVMNKID 161
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 3e-06
Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 45 LVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY----------L 94
L T + + K+ F FD+GG + RR W + V A+++ +
Sbjct: 198 LRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVI 257
Query: 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDI 133
+ R E+ ++ ++ L + ++ NK D+
Sbjct: 258 REDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 7e-06
Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 48 HQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY----------LIDA 97
PT + + F+ D+GG + RR W + V ++++ L+++
Sbjct: 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES 210
Query: 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDI 133
++ R ESK +++ + ++ NK D+
Sbjct: 211 DNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 4e-05
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 48 HQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID--AYDK----- 100
T + + FK FD+GG + R+ W + V A+++ + YD
Sbjct: 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 236
Query: 101 ---ERFSESKRELDALLSDEALADVPFLILGNKIDI 133
R ES + D++ +++ D ++ NK D+
Sbjct: 237 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 5e-05
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 51 TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD----------K 100
Q+ E ++ FD+GG + RR W + V AV++ + K
Sbjct: 170 IQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQK 229
Query: 101 ERFSESKRELDALLSDEALADVPFLILGNKIDI 133
R E+K D +L F++ NK DI
Sbjct: 230 NRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 262
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 6e-05
Identities = 19/180 (10%), Positives = 48/180 (26%), Gaps = 22/180 (12%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ------------HQPTQYPTSEELSIGKIK 65
+ G SGK++ ++ L+ + + Y ++
Sbjct: 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 126
Query: 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFL 125
+ K + + D + + RF ++ ++ +S F
Sbjct: 127 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISA----TRFKKNDIDIAKAISMM---KKEFY 179
Query: 126 ILGNKID-IPYAASEDELRYHMGLTNFTTGKGNV--NLDNTNVRPLEVFMCSIVRKMGYG 182
+ K+D ++ E + + N + +F+ S Y
Sbjct: 180 FVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYD 239
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 8e-05
Identities = 17/86 (19%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 58 ELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY----------LIDAYDKERFSESK 107
+ I + FK D+GG + R+ W + + V ++++ L++ R +ES
Sbjct: 195 DFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESL 254
Query: 108 RELDALLSDEALADVPFLILGNKIDI 133
+ ++++ ++V ++ NK D+
Sbjct: 255 NIFETIVNNRVFSNVSIILFLNKTDL 280
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 193 | |||
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 100.0 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 100.0 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 100.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 100.0 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 100.0 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 100.0 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 100.0 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 100.0 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 100.0 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 100.0 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 100.0 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 100.0 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 100.0 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.98 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.98 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.97 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.97 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.97 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.97 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.97 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.96 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.96 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.96 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.96 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.96 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.96 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.96 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.96 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.96 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.96 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.96 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.96 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.96 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.96 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.96 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.96 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.96 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.96 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.96 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.96 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.96 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.96 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.96 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.96 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.96 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.96 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.96 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.96 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.96 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.96 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.96 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.96 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.96 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.96 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.96 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.96 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.96 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.96 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.96 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.96 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.96 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.96 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.96 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.96 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.96 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.96 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.96 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.96 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.96 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.96 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.96 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.96 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.96 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.96 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.96 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.96 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.96 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.95 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.95 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.95 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.95 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.95 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.95 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.95 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.95 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.95 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.95 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.95 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.95 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.95 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.95 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.95 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.95 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.95 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.95 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.95 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.94 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.94 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.94 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.94 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.94 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.93 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.88 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.93 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.93 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.93 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.93 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.93 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.93 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.93 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.92 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.92 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.92 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.92 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.92 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.92 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.92 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.92 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.91 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.91 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.91 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.91 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.91 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.9 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.9 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.9 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.9 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.9 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.9 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.9 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.89 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.89 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.89 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.89 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.89 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.89 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.88 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.88 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.88 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.88 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.88 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.87 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.87 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.87 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.87 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.87 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.87 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.87 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.87 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.86 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.86 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.86 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.86 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.86 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.86 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.85 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.85 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.85 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.85 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.85 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.84 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.84 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.84 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.84 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.83 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.83 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.83 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.82 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.82 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.81 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.81 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.81 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.81 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.8 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.8 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.8 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.8 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.79 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.79 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.78 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.77 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.77 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.77 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.75 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.74 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.74 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.73 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.73 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.72 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.7 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.67 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.67 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.66 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.65 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.65 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.63 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.63 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.62 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.62 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.6 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.6 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.57 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.56 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.55 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.53 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.53 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.52 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.51 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.47 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.34 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.19 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.1 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.09 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.98 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.95 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.93 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.92 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.91 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.86 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.84 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.77 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.76 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.63 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.61 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.59 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.54 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.5 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.47 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.25 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.16 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.98 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.86 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.77 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.75 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.74 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 97.73 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.65 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.6 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.6 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.6 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.59 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.56 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.56 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.54 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.54 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.54 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.53 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.51 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.51 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.5 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.5 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.49 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.49 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.48 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.48 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.46 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.46 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 97.45 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.45 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.44 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.43 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.41 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.4 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.38 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.37 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.36 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 97.36 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 97.36 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.35 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.35 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 97.35 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.35 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.35 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.34 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.34 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.33 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.32 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 97.32 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 97.31 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 97.31 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.31 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 97.3 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.3 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.3 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.3 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.3 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.29 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.29 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.28 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.27 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.27 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 97.27 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.26 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.25 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.25 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 97.25 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.25 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.24 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.23 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 97.23 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.23 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 97.22 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.22 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.22 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.22 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.21 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.21 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.21 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.21 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.2 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.2 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.2 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.18 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.18 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.17 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.17 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.16 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 97.15 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.15 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.14 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.13 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.13 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.13 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.12 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 97.11 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.11 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.1 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.1 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.09 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.09 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.08 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.08 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.08 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 97.08 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.07 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.07 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 97.07 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.07 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.06 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.06 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.06 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 97.05 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.05 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.05 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.04 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.04 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.04 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.03 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.01 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.01 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.01 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 96.99 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.98 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.97 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.97 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.95 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.94 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.94 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.94 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 96.94 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.93 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.93 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.93 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.92 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 96.91 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.9 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.9 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 96.89 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.89 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.89 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.89 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.87 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 96.87 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.86 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.86 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.85 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.84 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.84 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.83 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.83 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 96.81 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 96.8 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.8 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.79 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.78 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.78 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.77 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 96.77 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.77 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.77 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.77 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.77 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.76 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.76 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.75 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.75 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.75 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.74 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.72 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.72 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.72 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.7 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.7 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.7 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.69 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 96.69 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.69 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.68 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.67 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.67 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.67 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.64 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.62 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.62 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.62 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.62 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.61 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 96.61 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.6 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.59 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.59 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.59 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.59 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 96.58 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.53 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 96.53 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.51 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.51 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.49 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.47 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.45 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.45 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.43 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 96.41 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.4 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 96.4 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.39 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.37 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.36 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.34 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.34 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.31 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.31 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.29 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.28 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.28 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.28 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.24 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.23 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.22 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.2 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 96.2 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.17 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.17 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 96.16 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.14 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 96.14 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.14 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.13 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.12 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.11 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 96.11 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 96.11 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.11 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.1 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 96.1 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 96.1 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.09 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.09 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.09 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.08 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.04 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 96.04 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 96.03 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 96.0 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.99 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.98 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.97 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 95.96 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.95 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 95.95 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 95.95 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 95.93 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 95.93 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 95.93 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 95.91 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.89 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.86 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.84 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 95.83 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.83 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 95.82 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.82 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 95.8 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 95.79 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.76 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.75 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 95.71 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 95.69 |
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-36 Score=212.51 Aligned_cols=192 Identities=60% Similarity=1.052 Sum_probs=147.1
Q ss_pred cHHHH----HHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhh
Q 029453 2 FLVDW----FYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 2 ~~~~~----~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
+|+.| ++..+.......+.++|+++|++|||||||++++.++.+..+.+|.+.....+.+++..+.+|||||++.+
T Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (198)
T 1f6b_A 3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 82 (198)
T ss_dssp ----------CHHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhh
Confidence 56777 66677777788899999999999999999999999988777777888888888899999999999999998
Q ss_pred HHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCc
Q 029453 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGN 157 (193)
Q Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 157 (193)
...+..++..+|++++|+|+++++++.....++..++......+.|+++|+||+|+.+....+++.+.++.......+..
T Consensus 83 ~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 162 (198)
T 1f6b_A 83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGS 162 (198)
T ss_dssp CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSC
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccc
Confidence 88888899999999999999999999999999998876544468999999999999877777777777765543333333
Q ss_pred ccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 158 VNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
..+.......+++++|||++|.|++++|++|.+.++
T Consensus 163 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l~ 198 (198)
T 1f6b_A 163 VSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198 (198)
T ss_dssp CCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTCC
T ss_pred cccccccCceEEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 223322235679999999999999999999998764
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=205.63 Aligned_cols=186 Identities=62% Similarity=1.051 Sum_probs=140.3
Q ss_pred cHHHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhH
Q 029453 2 FLVDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81 (193)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 81 (193)
||+.+++......+...+.++|+++|++|||||||++++.++.+..+.+|.+.....+.+++..+.+|||||++.+...+
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 84 (190)
T 1m2o_B 5 DIFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 84 (190)
T ss_dssp -------------------CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSG
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHH
Confidence 67788888877777888999999999999999999999999888777788888888888999999999999999998888
Q ss_pred HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCC
Q 029453 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 82 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
..+++.+|++++|+|+++++++.....++..++......+.|+++|+||+|+......+++.+.++... ...+.. +
T Consensus 85 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~--~- 160 (190)
T 1m2o_B 85 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQR--I- 160 (190)
T ss_dssp GGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-CCC-----C-
T ss_pred HHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-cccccc--c-
Confidence 888999999999999999999999999999887654446899999999999987677777777766543 111110 0
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....++++++||++|.|++++|++|.+++
T Consensus 161 -~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 161 -EGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp -CSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred -cccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 112457899999999999999999998764
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=189.74 Aligned_cols=160 Identities=31% Similarity=0.586 Sum_probs=137.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCCh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 100 (193)
+||+++|++|||||||++++.++.+....||.+.....+...+..+.+|||||++.+...+..++..+|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999988887777888877778888889999999999999999888999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCC
Q 029453 101 ERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 180 (193)
+++.....++..+.......+.|+++|+||+|+......+++...++..... ...++++++||++|.|
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR------------HRNWYIQATCATSGDG 148 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCS------------SCCEEEEECBTTTTBT
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCccccc------------CccEEEEEcccCCCcC
Confidence 9999999999888765444689999999999998766666777666544311 1236899999999999
Q ss_pred hhHHHHhhhhhc
Q 029453 181 YGEGFKWLSQYI 192 (193)
Q Consensus 181 i~~~~~~i~~~l 192 (193)
+++++++|.+.+
T Consensus 149 i~~l~~~l~~~i 160 (164)
T 1r8s_A 149 LYEGLDWLSNQL 160 (164)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=192.78 Aligned_cols=164 Identities=35% Similarity=0.622 Sum_probs=139.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
..+.++|+++|++|||||||++++.+..+..+.+|.+.....+.+++..+.+|||||++.+...+..++..+|++++|+|
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d 92 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVID 92 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 36889999999999999999999998877666677777777788889999999999999999988999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++++++.....++..++......+.|+++|+||+|+......+++.+.++..... ...++++++||+
T Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~ 160 (181)
T 1fzq_A 93 SADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIR------------DRVWQIQSCSAL 160 (181)
T ss_dssp TTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCC------------SSCEEEEECCTT
T ss_pred CcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhcc------------CCceEEEEccCC
Confidence 99999999998888888655444689999999999998766666776666543210 134689999999
Q ss_pred cCCChhHHHHhhhhhc
Q 029453 177 RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 177 ~~~gi~~~~~~i~~~l 192 (193)
+|.|++++|++|.+.+
T Consensus 161 ~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 161 TGEGVQDGMNWVCKNV 176 (181)
T ss_dssp TCTTHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998765
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=193.70 Aligned_cols=163 Identities=31% Similarity=0.568 Sum_probs=138.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
.+.++|+++|++|||||||++++.++......+|.+.....+.+++..+.+|||||++++...+..+++.+|++++|+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 95 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEEC
Confidence 68899999999999999999999988855667788877778888899999999999999998888899999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++++++.....++..++......+.|+++|+||+|+......+++.+.+...... ...++++++||++
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 96 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIR------------SHHWRIQGCSAVT 163 (186)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC------------SSCEEEEECCTTT
T ss_pred cCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhcc------------CCceEEEEeeCCC
Confidence 9999999999999888765444679999999999998766666776666543210 1346899999999
Q ss_pred CCChhHHHHhhhhhc
Q 029453 178 KMGYGEGFKWLSQYI 192 (193)
Q Consensus 178 ~~gi~~~~~~i~~~l 192 (193)
|.|+++++++|.+.+
T Consensus 164 ~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDI 178 (186)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998754
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=193.12 Aligned_cols=164 Identities=29% Similarity=0.556 Sum_probs=136.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
..+.++|+++|.+|||||||++++.++.+..+.+|.+.....+.+++..+.+|||||++++...+..+++.+|++++|+|
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 92 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 92 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 47889999999999999999999998887777778877778888899999999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++++++.....++..+.......+.|+++|+||+|+......+++.+.+....+. ...++++++||+
T Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~Sa~ 160 (187)
T 1zj6_A 93 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIK------------DHQWHIQACCAL 160 (187)
T ss_dssp TTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCC------------SSCEEEEECBTT
T ss_pred CCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhc------------CCCcEEEEccCC
Confidence 99999999999999988765334689999999999998766677776666543210 134689999999
Q ss_pred cCCChhHHHHhhhhhc
Q 029453 177 RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 177 ~~~gi~~~~~~i~~~l 192 (193)
+|.|+++++++|.+.+
T Consensus 161 ~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 161 TGEGLCQGLEWMMSRL 176 (187)
T ss_dssp TTBTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999998764
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=194.37 Aligned_cols=165 Identities=32% Similarity=0.581 Sum_probs=136.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
...+.+||+++|++|||||||++++.++.+....||.+.....+.+.+..+.+|||||++.+...+..++..+|++++|+
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~ 104 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 104 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 35678999999999999999999999888877777777777778888999999999999999888888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|+++++++.....++..++......+.|+++|+||+|+.+....+++...++..... ...++++++||
T Consensus 105 D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~SA 172 (192)
T 2b6h_A 105 DSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLR------------SRTWYVQATCA 172 (192)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCS------------SCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCccccc------------CCceEEEECcC
Confidence 999999999999999988765444689999999999998766667777776654311 13468999999
Q ss_pred ecCCChhHHHHhhhhhc
Q 029453 176 VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~l 192 (193)
++|.|+++++++|.+.+
T Consensus 173 ~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 173 TQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp TTTBTHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHH
Confidence 99999999999998865
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=188.72 Aligned_cols=164 Identities=34% Similarity=0.604 Sum_probs=140.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
..+.++|+++|++|||||||++++.++.+....+|.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|+|
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 83 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVD 83 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEE
Confidence 45679999999999999999999999888777788887778888889999999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++++++.....++..++......+.|+++|+||+|+......+++...+...... ...++++++||+
T Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~ 151 (171)
T 1upt_A 84 SCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALK------------DRKWQIFKTSAT 151 (171)
T ss_dssp TTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCT------------TSCEEEEECCTT
T ss_pred CCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhcc------------CCceEEEECcCC
Confidence 99999999999999888765444689999999999998766667777666544311 134689999999
Q ss_pred cCCChhHHHHhhhhhc
Q 029453 177 RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 177 ~~~gi~~~~~~i~~~l 192 (193)
+|.|+++++++|.+.+
T Consensus 152 ~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 152 KGTGLDEAMEWLVETL 167 (171)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999998764
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=196.50 Aligned_cols=163 Identities=36% Similarity=0.609 Sum_probs=140.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
++.+||+++|++|||||||++++.++.+....+|.+.....+.+++..+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 99 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS 99 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence 68999999999999999999999988887777888887888888999999999999998888888888999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++++++.....++..++......+.|+++|+||+|+......+++...+...... ...++++++||++
T Consensus 100 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 100 TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIM------------NRTWTIVKSSSKT 167 (189)
T ss_dssp TCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC------------SSCEEEEECCTTT
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhcc------------CCceEEEEccCCC
Confidence 9999999999999888776555689999999999998766667777666543311 1346899999999
Q ss_pred CCChhHHHHhhhhhc
Q 029453 178 KMGYGEGFKWLSQYI 192 (193)
Q Consensus 178 ~~gi~~~~~~i~~~l 192 (193)
|.|+++++++|.+.+
T Consensus 168 ~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 168 GDGLVEGMDWLVERL 182 (189)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 999999999998754
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=192.14 Aligned_cols=175 Identities=35% Similarity=0.572 Sum_probs=141.2
Q ss_pred HHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhh
Q 029453 6 WFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYY 85 (193)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 85 (193)
+++..+.......+.++|+++|++|||||||++++.++.+....+|.+.....+.+++..+.+|||||++.+...+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 83 (183)
T 1moz_A 4 IFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYY 83 (183)
T ss_dssp HHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTT
T ss_pred HHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHh
Confidence 44444444322278999999999999999999999988887677788877788888889999999999998888888889
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
..+|++++|+|+++++++.....++..+.......+.|+++|+||+|+......+++.+.++..... .
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~------------~ 151 (183)
T 1moz_A 84 ADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELK------------D 151 (183)
T ss_dssp TTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCC------------S
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCccccc------------C
Confidence 9999999999999999999999999888765445789999999999998766777777766544310 1
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++++++||++|.|+++++++|.+.+
T Consensus 152 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 152 RSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp SCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred CceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 346899999999999999999998764
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=189.51 Aligned_cols=165 Identities=32% Similarity=0.521 Sum_probs=139.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
..++.+||+++|++|||||||++++.++.+. ...+|.+.....+...+..+.+|||||++++...+..++..+|++++|
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 4567899999999999999999999988876 456677777777888899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+|+++++++.....++..++......+.|+++|+||+|+......+++...++..... ...+.++++|
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~S 165 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQ------------DREICCYSIS 165 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCC------------SSCEEEEECC
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhc------------cCCeeEEEEE
Confidence 9999999999999999888765444689999999999998766666776666543311 1346899999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|++|.|+++++++|.+.+
T Consensus 166 A~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 166 CKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp TTTCTTHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998865
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-32 Score=190.07 Aligned_cols=166 Identities=29% Similarity=0.539 Sum_probs=137.6
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+...+.+||+++|.+|||||||++++.+..+....+|.+.....+.+++..+.+|||||++++...+..++..+|++++|
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 95 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 95 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEE
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 34567899999999999999999999999886666777777788888899999999999999988888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+|+++++++.....++..+.......+.|+++|+||+|+......+++.+.+...... ...+.++++|
T Consensus 96 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~S 163 (181)
T 2h17_A 96 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIK------------DHQWHIQACC 163 (181)
T ss_dssp EETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC------------SSCEEEEECB
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCccccc------------CCceEEEEcc
Confidence 9999999999999999888764334689999999999998766677777666543310 1346899999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|++|.|+++++++|.+.+
T Consensus 164 a~~g~gi~~l~~~l~~~l 181 (181)
T 2h17_A 164 ALTGEGLCQGLEWMMSRL 181 (181)
T ss_dssp TTTTBTHHHHHHHHHTC-
T ss_pred CCCCcCHHHHHHHHHhhC
Confidence 999999999999998754
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=187.50 Aligned_cols=165 Identities=32% Similarity=0.558 Sum_probs=136.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCC-cc-ccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDER-LV-QHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
...+.++|+++|.+|||||||++++.+.. +. ...+|.+.....+.+++..+.+|||||++.+...+..++..+|++++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 45678999999999999999999999887 23 45567777777888888999999999999999888899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCC--CCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEAL--ADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++.....++..+...... .+.|+++|+||+|+.+....+++.+.+....+. ...+.++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 164 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIK------------DKPWHIC 164 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCC------------SSCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhcc------------CCceEEE
Confidence 99999999999999999988876544 589999999999998766777776665432210 1346899
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|+++++++|.+.+
T Consensus 165 ~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 165 ASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp ECBTTTTBTHHHHHHHHHHHC
T ss_pred EccCCCCcCHHHHHHHHHHHH
Confidence 999999999999999998865
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8e-32 Score=193.94 Aligned_cols=159 Identities=19% Similarity=0.241 Sum_probs=120.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
...+++||+++|.+|||||||++++..+.+.. +.+|.+... ..+..+ ...+.+|||+|++++..+...++..+++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 34578999999999999999999999988874 456665443 333443 3678999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++++|..+..|+..+.... ..+.|+++|+||+|+. +..+.++....... ..+
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~-----------------~~~ 150 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKE-----------------LNV 150 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTC
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHH-----------------hCC
Confidence 999999999999999999999886543 3579999999999996 34455443222111 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++||++|.||+++|+.|.+.+
T Consensus 151 ~~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 151 MFIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred eeEEEeCCCCcCHHHHHHHHHHHH
Confidence 679999999999999999998765
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=189.35 Aligned_cols=166 Identities=32% Similarity=0.587 Sum_probs=136.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc--CCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH--QPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
-..+.++|+++|.+|||||||++++.+..+... .+|.+.....+...+..+.+|||||++.+...+..++..+|++++
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 92 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIF 92 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence 355788999999999999999999999887753 678887777888889999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCC-------CCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 94 LIDAYDKERFSESKRELDALLSDEAL-------ADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
|+|+++++++.....++..++..... .+.|+++|+||+|+......+++...++...+.. ..
T Consensus 93 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-----------~~ 161 (199)
T 4bas_A 93 VVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMG-----------DH 161 (199)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHT-----------TS
T ss_pred EEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhcc-----------CC
Confidence 99999999999999999888754211 2789999999999987777777777776443100 03
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+.++++||++|.|++++|++|.+.+
T Consensus 162 ~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 162 PFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred eeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 46899999999999999999998754
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=198.12 Aligned_cols=163 Identities=32% Similarity=0.593 Sum_probs=138.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
.+.+||+++|.+|||||||++++.+..+....+|.+.....+...+..+.+|||||++.+...+..++..+|++|+|+|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~ 242 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 242 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEET
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 46679999999999999999999998887777888888888889999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++++++.....++..++......++|+++|+||+|+......+++...++..... ...++++++||++
T Consensus 243 ~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~------------~~~~~~~~vSAk~ 310 (329)
T 3o47_A 243 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR------------HRNWYIQATCATS 310 (329)
T ss_dssp TCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCC------------SSCEEEEECBTTT
T ss_pred CchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhh------------cCCCEEEEEECCC
Confidence 9999999999999888776555689999999999998777777888877765521 1457899999999
Q ss_pred CCChhHHHHhhhhhc
Q 029453 178 KMGYGEGFKWLSQYI 192 (193)
Q Consensus 178 ~~gi~~~~~~i~~~l 192 (193)
|.|++++|++|.+.+
T Consensus 311 g~gi~el~~~l~~~l 325 (329)
T 3o47_A 311 GDGLYEGLDWLSNQL 325 (329)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998865
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=174.20 Aligned_cols=156 Identities=21% Similarity=0.191 Sum_probs=101.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
.+||+++|++|||||||++++.+.......++.+... ..+... ...+.+||+||++.+...+..++..+|++++|+|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 5799999999999999999998777654444433332 233343 3578899999999999888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+++++++.....|+..+.......+.|+++|+||+|+.+. ...++....... ..++++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~S 144 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVV-----------------FDCKFIETS 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHH-----------------TTCEEEECB
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHH-----------------hCCcEEEec
Confidence 9999999999999999887655678999999999999732 233322221111 124789999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|++|.|++++|++|.+.+
T Consensus 145 a~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 145 AALHHNVQALFEGVVRQI 162 (166)
T ss_dssp GGGTBSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=174.63 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=111.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc--eeEEEeCC--eEEEEEEcCChhh--hHHhHHhhhccCCEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT--SEELSIGK--IKFKAFDLGGHQM--ARRVWKDYYAKVDAV 91 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~--~~~~~~~~~~~~d~i 91 (193)
++.+||+++|++|||||||++++.+..+....++.+.+ ...+.+++ ..+.+|||||++. +......++..+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 46789999999999999999999998876555544443 34455555 4788999999987 455566778889999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+.......+.|+++|+||+|+... ...++...... . ..++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~ 144 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-V----------------FDCK 144 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-H----------------HTSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH-H----------------cCCe
Confidence 999999999999998888888876544468999999999999743 33333221110 0 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 145 ~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 145 FIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-29 Score=178.02 Aligned_cols=176 Identities=22% Similarity=0.250 Sum_probs=120.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC---CeEEEEEEcCChhhhHH-hHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG---KIKFKAFDLGGHQMARR-VWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii 92 (193)
..+.+||+++|++|||||||++++.++.+....++.......+.++ +..+.+|||||++.+.. .+..++..+|+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 4578999999999999999999999988776666655555566666 57899999999999887 7788899999999
Q ss_pred EEEeCCChh-hHHHHHHHHHHHHhC--CCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCc---------cccCCCcccC
Q 029453 93 YLIDAYDKE-RFSESKRELDALLSD--EALADVPFLILGNKIDIPYAASEDELRYHMGLTN---------FTTGKGNVNL 160 (193)
Q Consensus 93 ~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 160 (193)
+|+|+++.. ++.....++..++.. ....+.|+++|+||+|+......++..+.+.... .........+
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999999853 355555555555432 2235789999999999986655544333322100 0000000000
Q ss_pred CC--------CCC-----ccEEEEEEeeecC------CChhHHHHhhhhhc
Q 029453 161 DN--------TNV-----RPLEVFMCSIVRK------MGYGEGFKWLSQYI 192 (193)
Q Consensus 161 ~~--------~~~-----~~~~~~~~Sa~~~------~gi~~~~~~i~~~l 192 (193)
.. .+. ..+.+++|||++| .|++++|++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 00 011 1678999999999 99999999998753
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=172.57 Aligned_cols=158 Identities=18% Similarity=0.241 Sum_probs=122.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+.+||+++|++|||||||++++.++.+.. ..+|.+... ..+..+ ...+.+||+||++.+...+..++..+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 57899999999999999999999887653 334443322 223333 46789999999999988888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++++.++.....++..+.......+.|+++|+||+|+.. ....++........ ...++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 145 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW----------------CNCAFLE 145 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT----------------TSCEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHc----------------cCCcEEE
Confidence 99999999988888888776644446899999999999963 23333333221111 1357899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|+++++++|.+.+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 146 SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-29 Score=172.17 Aligned_cols=158 Identities=19% Similarity=0.264 Sum_probs=123.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.++.+.. ..++.+... ..+... ...+.+||+||++.+...+..++..+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 3568999999999999999999999887664 334444332 334444 46899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.. ....++....... ..++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 144 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADD-----------------NSLL 144 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHH-----------------cCCe
Confidence 99999999999988888888876542 35799999999999863 2333333322111 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 145 ~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 145 FMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998865
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-29 Score=172.21 Aligned_cols=158 Identities=18% Similarity=0.289 Sum_probs=121.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.+.+||+++|++|||||||++++.+..+.. ..+|.+... ..+..++ ..+.+||+||++++...+..++..+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 357899999999999999999999888653 333433322 3344554 578999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++.....|+..+.......+.|+++|+||+|+.. ....++....... ..++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 144 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ-----------------WNVNYV 144 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHH-----------------cCCeEE
Confidence 999999999998888888887654446899999999999963 3333343332211 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|+++++++|.+.+
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 145 ETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-29 Score=175.50 Aligned_cols=158 Identities=18% Similarity=0.304 Sum_probs=120.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCc-ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-PTQYP-TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
++.+||+++|++|||||||++++.+..+.... +|... ....+..++ ..+.+|||||++.+...+..++..+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999988866433 33322 233444555 457789999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA-SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+|++++.++.....|+..+.......+.|+++|+||+|+.... ..++... +... ..+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~-~~~~----------------~~~~~~~ 144 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQD-LARS----------------YGIPFIE 144 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHH-HHHH----------------HTCCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHH-HHHH----------------cCCeEEE
Confidence 99999999999999998888775555789999999999997433 3332221 1111 1136799
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|+++++++|.+.+
T Consensus 145 ~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 145 TSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998754
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=173.84 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=120.7
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...+.+||+++|++|||||||++++.++.+.. ..+|.+.....+.+++ ..+.+|||+|++.+. ++..+|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 45688999999999999999999999888764 4445443344566666 567789999998776 567799999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC----CCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP----YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+|+|++++.+++....|+..+.......+.|+++|+||+|+. +....++........ ..+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----------------~~~ 154 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL----------------KRC 154 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHT----------------TTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHc----------------CCC
Confidence 999999999999999999988765444679999999999984 333333332222111 125
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++||++|.|++++|++|.+.+
T Consensus 155 ~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 155 TYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-29 Score=176.80 Aligned_cols=158 Identities=18% Similarity=0.240 Sum_probs=120.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|.+|||||||++++.+..+.. ..+|.+. ....+.+++ ..+.+|||||++++...+..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 4567999999999999999999999888653 3445443 344556665 6899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccE-
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL- 168 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 168 (193)
++|+|+++++++.....|+..+.... ..+.|+++|+||+|+.. ....++........ .+
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-----------------~~~ 167 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHY-----------------DIL 167 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-----------------TCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHHc-----------------CCC
Confidence 99999999999988888888876532 35799999999999973 33444433322111 13
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++||++|.|++++|++|.+.+
T Consensus 168 ~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 168 CAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-29 Score=172.78 Aligned_cols=157 Identities=18% Similarity=0.255 Sum_probs=121.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc-ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP-TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
++++|+++|++|||||||++++.++.+.. ..++... ....+..++ ..+.+||+||++.+...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 57899999999999999999999887664 3334332 234445554 4589999999999998888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++++.++.....++..+.......+.|+++|+||+|+.. ....++....... ..+++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 144 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE-----------------WGCPFME 144 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTSCEEE
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHH-----------------hCCCEEE
Confidence 99999999988888888887655556899999999999863 2233322221110 1136899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|+++++++|.+.+
T Consensus 145 ~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 145 TSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp ECTTCHHHHHHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-29 Score=173.18 Aligned_cols=161 Identities=19% Similarity=0.258 Sum_probs=122.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
...+.++|+++|++|||||||++++.+..+. ...++.+.. ...+..++ ..+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 3457899999999999999999999988765 344455443 34455555 589999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCC-CCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDE---ALADVPFLILGNKIDIP-YAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+++|+|++++.++.....|+..+.... ...+.|+++|+||+|+. +....++........ .
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~----------------~ 146 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDN----------------G 146 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHT----------------T
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhc----------------C
Confidence 999999999988888877777765432 22578999999999996 333444433332211 2
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|+++++++|.+.+
T Consensus 147 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 147 DYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp CCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 24789999999999999999998754
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=175.28 Aligned_cols=159 Identities=18% Similarity=0.282 Sum_probs=125.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..+.++|+++|++|||||||++++.+..+.. ..+|.+.. ...+..++ ..+.+|||||++.+...+..++..+|+++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 4577999999999999999999999888654 33444332 23445555 47899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++++++.....|+..+.......+.|+++|+||+|+.. ....++....... ..+++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 153 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-----------------WNVNY 153 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHH-----------------hCCeE
Confidence 9999999999999988888887655456899999999999963 3334443332211 12478
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|.|++++|++|.+.+
T Consensus 154 ~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 154 VETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp EEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=172.83 Aligned_cols=159 Identities=22% Similarity=0.285 Sum_probs=121.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhH-HhHHhhhccCCE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMAR-RVWKDYYAKVDA 90 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~~d~ 90 (193)
.++.+||+++|.+|||||||++++.++.+.. ..++.+. ....+..++ ..+.+|||||++.+. ..+..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 4578999999999999999999999887763 4444443 334555555 689999999999988 788889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++.++.....|+..+.......+.|+++|+||+|+.. ....++....... ..+
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~ 159 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADT-----------------HSM 159 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHH-----------------cCC
Confidence 999999999999988888888887655456899999999999963 2333332221110 113
Q ss_pred EEEEEeeecC---CChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRK---MGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~---~gi~~~~~~i~~~l 192 (193)
+++++||+++ .|++++|++|.+.+
T Consensus 160 ~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 160 PLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred EEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 6899999999 99999999998765
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=174.14 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=124.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccee---EEEeC-----------CeEEEEEEcCChhhhHHhH
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSE---ELSIG-----------KIKFKAFDLGGHQMARRVW 81 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~---~~~~~-----------~~~~~~~D~~g~~~~~~~~ 81 (193)
..+.+||+++|++|||||||++++.++.+. ...+|.+.... .+... ...+.+|||||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 457799999999999999999999988765 33455554332 33443 3589999999999999999
Q ss_pred HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCccc
Q 029453 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVN 159 (193)
Q Consensus 82 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~ 159 (193)
..+++.+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.. ....++.......
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------- 156 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK----------- 156 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----------
Confidence 999999999999999999999988888888887654446899999999999963 3333333222111
Q ss_pred CCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 160 LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++++++||++|.|+++++++|.+.+
T Consensus 157 ------~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 157 ------YGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp ------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 113679999999999999999998754
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=170.64 Aligned_cols=159 Identities=19% Similarity=0.274 Sum_probs=123.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT--SEELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
...+.+||+++|++|||||||++++.+..+... .++.+.. ...+.+. ...+.+||+||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 356789999999999999999999998887643 3444433 3344444 3589999999999999888999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.. ....++....... ..+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~ 149 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQE-----------------NGL 149 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHH-----------------cCC
Confidence 999999999999988888888876542 35799999999999963 2333333332211 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|+++++++|.+.+
T Consensus 150 ~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 150 FFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998765
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=173.42 Aligned_cols=159 Identities=19% Similarity=0.205 Sum_probs=124.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccee--EEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSE--ELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
...+.+||+++|++|||||||++++.+..+. ...++.+.... .+.. ....+.+|||||++.+...+..++..+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 3567899999999999999999999988865 44555554332 2333 34689999999999999988899999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++.++.....|+..+... ...+.|+++|+||+|+.. ....++....... ..+
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~ 160 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAES-----------------IGA 160 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT-----------------TTC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------cCC
Confidence 99999999999998888888877543 235799999999999963 3344443333211 125
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|+++++++|.+.+
T Consensus 161 ~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 161 IVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH
Confidence 789999999999999999998765
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=173.38 Aligned_cols=160 Identities=18% Similarity=0.280 Sum_probs=124.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
...+.+||+++|++|||||||++++.+..+... .+|.... ...+...+ ..+.+||+||++.+...+..++..+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 345779999999999999999999998886543 3343332 23345554 5789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|+++++++.....|+..+.......+.|+++|+||+|+.. ....++....... ..++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 156 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-----------------WNVN 156 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-----------------cCCe
Confidence 99999999999988888888887655445899999999999963 3344443333211 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 157 ~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 157 YVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=169.21 Aligned_cols=156 Identities=19% Similarity=0.319 Sum_probs=121.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
+.++|+++|++|||||||++++.+..+.. ..++.+.. ...+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999888663 44555533 33444544 589999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-----CCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-----ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+... ...++...... . ..+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-~----------------~~~ 143 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAE-E----------------KGL 143 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH-H----------------HTC
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHH-H----------------cCC
Confidence 999999999988888888876543 357999999999999632 22222211110 0 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|++++|++|.+.+
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 144 LFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp EEEECCTTTCTTHHHHHHHHHTTS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998765
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-29 Score=174.59 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=121.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.+.++|+++|++|||||||++++.++.+.. ..+|.+.. ...+..++ ..+.+|||||++.+...+..++..+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 467899999999999999999999777653 34454433 33445555 567899999999988888888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++.....|+..+.......+.|+++|+||+|+.. ....++........ .++++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~ 146 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESW-----------------NAAFL 146 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHT-----------------TCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHh-----------------CCcEE
Confidence 999999999999999988887766556899999999999963 33333333222111 24789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 147 ~~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 147 ESSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp ECCTTSHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=172.50 Aligned_cols=158 Identities=20% Similarity=0.259 Sum_probs=123.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.+..+.. ..++.+. ....+..++ ..+.+|||||++.+...+..++..+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 4577999999999999999999999887663 3444443 234455555 6899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.. .....+....... ..++
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 148 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQE-----------------NELM 148 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCE
Confidence 99999999999988888887765432 25799999999999963 3333333222111 1257
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 149 ~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 149 FLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999997754
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=172.29 Aligned_cols=159 Identities=18% Similarity=0.268 Sum_probs=124.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..+.++|+++|.+|||||||++++.+..+.. ..+|.+... ..+..++ ..+.+|||||++++...+..++..+|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 4578999999999999999999999887664 334444332 3455554 57889999999999888888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++++++.....|+..++......+.|+++|+||+|+.. ....++....... ..+.+
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~ 148 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS-----------------HHVAY 148 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----------------cCCeE
Confidence 9999999999999988888886654456899999999999963 2333332221111 12478
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|.|+++++++|.+.+
T Consensus 149 ~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 149 FEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-29 Score=173.80 Aligned_cols=157 Identities=22% Similarity=0.333 Sum_probs=121.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCC--cceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQY--PTSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.+..+. ...++.+ .....+..++ ..+.+|||||++.+...+..++..+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 567899999999999999999999988766 3344444 3345556666 6899999999999988888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+.... .+.|+++|+||+|+... ....+....... ..++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 146 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQ-----------------MGIQ 146 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHHH-----------------cCCe
Confidence 99999999999999888888876532 57999999999998732 232222221111 1136
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 147 LFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998754
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=173.74 Aligned_cols=158 Identities=22% Similarity=0.265 Sum_probs=123.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
.+.++|+++|++|||||||++++.+..+. ...++.+.. ...+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 36789999999999999999999988866 344454433 33444443 67999999999999888899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|++++.++.....|+..+.......+.|+++|+||+|+... ...++....... ..+.++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~ 155 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-----------------HSMLFI 155 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-----------------TTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHH-----------------cCCEEE
Confidence 99999999999888888888865544468999999999999632 333333222211 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|+++++++|.+.+
T Consensus 156 ~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 156 EASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-29 Score=177.06 Aligned_cols=158 Identities=23% Similarity=0.265 Sum_probs=118.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC-----------CCCccee-----EEEeCCeEEEEEEcCChhhhHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-----------TQYPTSE-----ELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-----------t~~~~~~-----~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
..+.+||+++|++|||||||++.+.+.....+.+ |.+.... .+......+.+|||||++.+...
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 4578999999999999999997776544333221 2111111 11123467999999999999999
Q ss_pred HHhhhccCCEEEEEEeCC------ChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccC
Q 029453 81 WKDYYAKVDAVVYLIDAY------DKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTG 154 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 154 (193)
+..+++.+|++++|+|++ +.+++..+..|+..+ .....+.|+++|+||+|+.+....++..+......
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~--~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~---- 164 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY--GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG---- 164 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT--TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTC----
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh--ccccCCCCEEEEEEchhcccccCHHHHHHHHHhcC----
Confidence 999999999999999999 455666666666666 23346899999999999987777777666554322
Q ss_pred CCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 155 KGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|++++|++|.+.+
T Consensus 165 ------------~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 165 ------------KFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp ------------CSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred ------------CceEEEEecCCCcCHHHHHHHHHHHH
Confidence 12789999999999999999998754
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=172.65 Aligned_cols=160 Identities=17% Similarity=0.207 Sum_probs=123.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCCe--EEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGKI--KFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~~--~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
...+.+||+++|++|||||||++++.+..+.. ..++.+.. ......++. .+.+||+||++.+...+..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 34578999999999999999999999887663 33444332 334445554 566799999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|+++++++.....|+..+.......+.|+++|+||+|+.. ....++....... ..++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~ 156 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATK-----------------YNIP 156 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHH-----------------HTCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHH-----------------hCCe
Confidence 99999999999998888888887654456899999999999974 3333332221111 1146
Q ss_pred EEEEeee-cCCChhHHHHhhhhhc
Q 029453 170 VFMCSIV-RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~-~~~gi~~~~~~i~~~l 192 (193)
++++||+ +|.|++++|++|.+.+
T Consensus 157 ~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 157 YIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp EEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred EEEeccCCCCCCHHHHHHHHHHHH
Confidence 8999999 9999999999998765
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=173.02 Aligned_cols=155 Identities=17% Similarity=0.239 Sum_probs=121.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC-------------------------------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK------------------------------- 63 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~------------------------------- 63 (193)
.+.+||+++|++|||||||++++.+..+.. ..+|.+... ..+..++
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 467999999999999999999999887663 344444332 2333332
Q ss_pred --------eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-
Q 029453 64 --------IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP- 134 (193)
Q Consensus 64 --------~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~- 134 (193)
..+.+|||||++.+...+..+++.+|++++|+|++++.++.....|+..+... .+.|+++|+||+|+.
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCccc
Confidence 78999999999999998899999999999999999999998888888888654 249999999999943
Q ss_pred CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 135 YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+....+++....... .++++++||++|.|+++++++|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 162 FQVDILEVQKYAQDN-----------------NLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp CCSCHHHHHHHHHHT-----------------TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHc-----------------CCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 334444444333221 24889999999999999999998754
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-29 Score=173.15 Aligned_cols=159 Identities=18% Similarity=0.222 Sum_probs=121.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCC--cceeEEEeCC---eEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQY--PTSEELSIGK---IKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
..+.+||+++|++|||||||++++.+..+. ...+|.+ .....+.+++ ..+.+|||||++.+...+..++..+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 457899999999999999999999988765 3344554 3445566655 789999999999998888999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCC-CCCCc-EEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEA-LADVP-FLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p-viiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+++|+|+++++++.....|+..+..... ..+.| +++|+||+|+.. ....++....... .
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~ 145 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQE-----------------N 145 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------H
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHH-----------------c
Confidence 9999999999988888877777654210 01345 899999999963 2333332222110 1
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++++||++|.|++++|++|.+.+
T Consensus 146 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 146 GFSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 24789999999999999999998754
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-29 Score=173.81 Aligned_cols=161 Identities=21% Similarity=0.301 Sum_probs=116.5
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCccee--EEEeCC--eEEEEEEcCChhhhHHhHHhhhcc
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLV--QHQPTQYPTSE--ELSIGK--IKFKAFDLGGHQMARRVWKDYYAK 87 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~ 87 (193)
....++.++|+++|++|||||||++++.+..+. ...+|.+.... .+..++ ..+.+|||||++.+...+..++..
T Consensus 4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 83 (180)
T 2g6b_A 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD 83 (180)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence 345678899999999999999999999988875 34455554432 334454 478999999999999888899999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
+|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+... ...++.......
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------------- 145 (180)
T 2g6b_A 84 AHALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKE----------------- 145 (180)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHH-----------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHHH-----------------
Confidence 999999999999998888888887776532 257999999999999742 233332221110
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++++++||++|.|+++++++|.+.+
T Consensus 146 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 146 YGLPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 113689999999999999999998754
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=173.20 Aligned_cols=160 Identities=20% Similarity=0.267 Sum_probs=123.8
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCC
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVD 89 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d 89 (193)
+...+.+||+++|++|||||||++++.+..+.. ..++.+. ....+..++ ..+.+||+||++.+...+..+++.+|
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 344567999999999999999999999888663 3444443 334555665 67999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
++++|+|++++.++.....|+..+... ...+.|+++|+||+|+.... ...+....... ..
T Consensus 91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~ 152 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS-----------------LG 152 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHHHHHH-----------------cC
Confidence 999999999999998888888777543 23579999999999997432 22222111111 11
Q ss_pred EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++++||++|.|++++|++|.+.+
T Consensus 153 ~~~~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 153 IPFLETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp CCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3679999999999999999998754
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=168.74 Aligned_cols=158 Identities=21% Similarity=0.224 Sum_probs=122.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.+..+.. ..++.+... ......+ ..+.+|||||++.+...+..++..+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 4578999999999999999999999888653 445554332 3344443 6789999999999988888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+.. ...++.|+++|+||+|+.. ....++....... ...+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~ 144 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCDLTDVREVMERDAKDYADS-----------------IHAI 144 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHH-HSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEECCccccccccCHHHHHHHHHH-----------------cCCE
Confidence 999999999988888888777754 3346799999999999963 2223332222111 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 145 ~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 145 FVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH
Confidence 89999999999999999998765
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-29 Score=179.07 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=118.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce-eE--EEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTS-EE--LSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~-~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.+.+||+++|.+|||||||++++.+..+... .+|.+... .. .......+.+|||||++.+...+..++..+|++++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL 101 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence 4789999999999999999999998887643 34444322 12 22345788999999999988888889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++.....|+..+.......++|+++|+||+|+.. .....+...... . ..++++
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~~~ 164 (201)
T 3oes_A 102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE-S----------------WGATFM 164 (201)
T ss_dssp EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH-H----------------HTCEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH-H----------------hCCeEE
Confidence 999999999999999999987665556899999999999863 223222211111 1 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 165 ~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 165 ESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp ECCTTCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=170.34 Aligned_cols=156 Identities=20% Similarity=0.229 Sum_probs=111.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCC--CCCcceeEEEeCC--eEEEEEEcCChhhhHH-hHHhhhccCCEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQP--TQYPTSEELSIGK--IKFKAFDLGGHQMARR-VWKDYYAKVDAVVY 93 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~ 93 (193)
.+||+++|++|||||||++++.+..... ..+ +.......+..++ ..+.+||+||++.+.. ....++..+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 4799999999999999999998766542 222 3333344455554 5788999999988765 55566788999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++.....|+..+.......+.|+++|+||+|+. +....++....... ..++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 144 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-----------------LSCKHI 144 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEE
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHH-----------------cCCcEE
Confidence 99999999999999999998776554589999999999996 33444333222211 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 145 ETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EecCccCCCHHHHHHHHHHHH
Confidence 999999999999999998765
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-29 Score=175.82 Aligned_cols=166 Identities=18% Similarity=0.188 Sum_probs=118.0
Q ss_pred HHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhh
Q 029453 9 GILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDY 84 (193)
Q Consensus 9 ~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~ 84 (193)
..........+.+||+++|.+|||||||++++.++.+.. ..+|.+... ..+..++ ..+.+|||||++.+...+..+
T Consensus 12 ~~~~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 91 (194)
T 3reg_A 12 TGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLS 91 (194)
T ss_dssp ---------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGG
T ss_pred cccccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhh
Confidence 344444556688999999999999999999999988753 344544433 2344444 457999999999999988899
Q ss_pred hccCCEEEEEEeCCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHHhhCCCccccCCCccc
Q 029453 85 YAKVDAVVYLIDAYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIPY----AASEDELRYHMGLTNFTTGKGNVN 159 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~ 159 (193)
+..+|++++|+|+++++++... ..|+..+... ..+.|+++|+||+|+.. ....++........
T Consensus 92 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------- 159 (194)
T 3reg_A 92 YADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL---------- 159 (194)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH----------
T ss_pred ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc----------
Confidence 9999999999999999999886 4555555322 25799999999999963 23333322211111
Q ss_pred CCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 160 LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....++++||++|.|++++|++|.+.+
T Consensus 160 ------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 160 ------GCVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp ------TCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------CCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 111379999999999999999998754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=170.83 Aligned_cols=159 Identities=18% Similarity=0.256 Sum_probs=122.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
...++++|+++|++|||||||++++.+..+.. ..++.+. ....+..++ ..+.+|||||++.+...+..++..+|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 34577999999999999999999999887663 3444443 334455555 579999999999999888899999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.. ....++....... ..+
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~ 151 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-----------------LNV 151 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHH-----------------cCC
Confidence 999999999988888888887775432 25799999999999963 2333333222111 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|+++++++|.+.+
T Consensus 152 ~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 152 MFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998765
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-29 Score=171.05 Aligned_cols=156 Identities=18% Similarity=0.309 Sum_probs=121.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
.+.+||+++|++|||||||++++.+..+.. ..+|.+.. ...+..++ ..+.+|||||++.+...+..++..+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999887653 34454433 34445544 58999999999998888888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.. ....++....... ..+++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 143 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKR-----------------LKLRF 143 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HTCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHH-----------------cCCeE
Confidence 9999999998888888887775533 5789999999999963 3333333222211 12478
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|.|+++++++|.+.+
T Consensus 144 ~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 144 YRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp EECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-28 Score=168.23 Aligned_cols=158 Identities=17% Similarity=0.242 Sum_probs=123.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.++|+++|.+|||||||++++.+..+.. ..++.+.. ...+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 4578999999999999999999999888664 33444433 33444544 5789999999999998899999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.. ....++..+.... ..++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 153 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-----------------NGLL 153 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCE
Confidence 99999999998888888887775432 35789999999999963 3333333332211 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 154 FLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998765
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=177.34 Aligned_cols=160 Identities=18% Similarity=0.258 Sum_probs=121.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeC------------CeEEEEEEcCChhhhHHh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIG------------KIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~------------~~~~~~~D~~g~~~~~~~ 80 (193)
...+.+||+++|++|||||||++++.+..+.. ..+|.+.. ...+.+. ...+.+|||||++.+...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 35678999999999999999999999887653 23333322 2223332 467999999999999999
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcc
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNV 158 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (193)
+..++..+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.. ....++.......
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~---------- 170 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK---------- 170 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH----------
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH----------
Confidence 9999999999999999999998888888877765433336799999999999963 2333332222111
Q ss_pred cCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 159 NLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++++++||++|.|+++++++|.+.+
T Consensus 171 -------~~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 171 -------YGIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp -------TTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -------CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 113689999999999999999998754
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=171.87 Aligned_cols=158 Identities=20% Similarity=0.283 Sum_probs=122.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.+..+.. ..++.+... ..+..+ ...+.+|||||++.+...+..++..+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 4577999999999999999999999888763 334444332 333333 46789999999999988889999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+... ...+.|+++|+||+|+.. ....++....... ..+.
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 163 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAEN-----------------NGLL 163 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHHH-----------------cCCE
Confidence 9999999999888888888887643 345799999999999973 2333333222211 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 164 ~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 164 FLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-28 Score=171.80 Aligned_cols=158 Identities=21% Similarity=0.293 Sum_probs=121.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
....+||+++|++|||||||++++.+..+.. ..++.+... ..+... ...+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 4567899999999999999999999988753 344554332 334444 36899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+... ...+.|+++|+||+|+... ...++...... . ..++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~----------------~~~~ 146 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLAD-H----------------LGFE 146 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHH-H----------------HTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHH-H----------------CCCe
Confidence 9999999999998888888777543 2357899999999999742 23322222111 0 1147
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 147 FFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=174.29 Aligned_cols=158 Identities=20% Similarity=0.246 Sum_probs=117.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.++.+.. ..++.+. ....+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 4578999999999999999999999887653 3344432 334555555 6899999999999888888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.. .....+....... ..+.
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~ 163 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQE-----------------NELM 163 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHH-----------------cCCE
Confidence 99999999999988888888775432 25799999999999963 3333333222111 1257
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 164 ~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 164 FLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=170.34 Aligned_cols=158 Identities=22% Similarity=0.268 Sum_probs=114.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.+..+.. ..++.+... ..+..++ ..+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 4578999999999999999999999887653 445555433 3444443 5789999999999888888889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+... ...+.|+++|+||+|+.. ....++....... ..++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 144 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAES-----------------VGAK 144 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHHHH-----------------cCCe
Confidence 9999999999888888887776432 124789999999999963 3333333322111 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 145 HYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998764
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-29 Score=175.33 Aligned_cols=158 Identities=17% Similarity=0.284 Sum_probs=121.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|.+|||||||++++.+..+.. ..++.+.. ...+.. ....+.+||+||++.+...+..++..+|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 4477899999999999999999999877653 33333332 233333 457899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|+++++++.....|+..+.. ....+.|+++|+||+|+.. ....++....... ..++
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 161 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKT-YSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ-----------------LGFD 161 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEECCCCccccccCHHHHHHHHHH-----------------cCCe
Confidence 999999999999888888877754 3345899999999999863 2333322211111 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 162 ~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 162 FFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=173.50 Aligned_cols=158 Identities=20% Similarity=0.224 Sum_probs=122.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.++.+.. ..+|.+.. ...+.+++ ..+.+|||||++.+...+..++..+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 4577999999999999999999999887663 44454433 33455555 5789999999999999888999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+... ...+.|+++|+||+|+.. ....++...... . ..++
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~ 164 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSE-A----------------QDMY 164 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHH-H----------------HTCC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHH-H----------------cCCE
Confidence 9999999999998888888777543 235789999999999963 333333322111 0 1246
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 165 YLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999997654
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=171.79 Aligned_cols=158 Identities=20% Similarity=0.259 Sum_probs=121.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.+..+.. ..++.+. ....+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 4578899999999999999999999888763 3344443 334555555 5899999999999988888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|+++++++.....|+..+... ...+.|+++|+||+|+.. ....++....... ..+.
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~ 159 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFARE-----------------HGLI 159 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHHHH-----------------cCCE
Confidence 9999999999998888888877643 235799999999999963 3333333222111 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 160 ~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 160 FMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999997754
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-28 Score=168.42 Aligned_cols=154 Identities=16% Similarity=0.191 Sum_probs=115.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
.+.+||+++|++|||||||++++.++.+..+.+|.+.. ...+..++ ..+.+|||||+++ ..+++.+|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 47899999999999999999999998887666665543 23445554 5688999999986 3456789999999
Q ss_pred EeCCChhhHHHHHHHHHHHHh--CCCCCCCcEEEEeeCCCCC----CCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 95 IDAYDKERFSESKRELDALLS--DEALADVPFLILGNKIDIP----YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~--~~~~~~~pviiv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+|+++++++.....|+..+.. .....+.|+++|+||+|+. +....++....... . ..+
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~-~---------------~~~ 143 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXAD-M---------------KRC 143 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH-H---------------SSE
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHh-h---------------cCC
Confidence 999999999888886544322 2233579999999999994 23333333322111 0 236
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|++++|++|.+.+
T Consensus 144 ~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 144 SYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEEeccccCCHHHHHHHHHHHH
Confidence 899999999999999999998754
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-28 Score=171.33 Aligned_cols=161 Identities=20% Similarity=0.238 Sum_probs=117.4
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCC--cceeEEEeCC--eEEEEEEcCChhhhHH-hHHhhhccC
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQY--PTSEELSIGK--IKFKAFDLGGHQMARR-VWKDYYAKV 88 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~~~ 88 (193)
+.....+||+++|.+|||||||++++.+.... ...++.. .....+.+++ ..+.+|||+|++.+.. +...++..+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 34557899999999999999999999754332 2223222 2234445554 5678999999987654 667778899
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
|++++|+|+++++++..+..|+..+.......+.|+++|+||+|+.. ....++....... .
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~-----------------~ 160 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT-----------------L 160 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------T
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHH-----------------h
Confidence 99999999999999999999998886544335799999999999973 2333333221110 1
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++++||++|.|++++|++|.+.+
T Consensus 161 ~~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 161 SCKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp TCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 14789999999999999999998754
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-28 Score=169.22 Aligned_cols=160 Identities=22% Similarity=0.330 Sum_probs=110.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeC---CeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIG---KIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
..+.++|+++|++|||||||++++.+..+.. ..++.+. ....+..+ ...+.+||+||++.+...+..++..+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4578999999999999999999999887653 3444433 33344443 3689999999999999888889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCCC---CCCHHHHHHhhCCCccccCCCcccCCCCC
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDE---ALADVPFLILGNKIDIPY---AASEDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+++|+|++++.++.....|+..+.... ...+.|+++|+||+|+.. ....++....... .
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~-~-------------- 149 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS-L-------------- 149 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH-T--------------
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh-c--------------
Confidence 999999999998888888887775432 225789999999999952 2233333222210 1
Q ss_pred CccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 150 -~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 150 -GDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp -TSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -CCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 224689999999999999999998754
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-29 Score=173.60 Aligned_cols=158 Identities=20% Similarity=0.267 Sum_probs=95.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.++|+++|++|||||||++++.+..+.. ..+|.+. ....+.+++ ..+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 4567999999999999999999999877653 3344432 334555665 7899999999999888888889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+... ...+.|+++|+||+|+.. ....++....... ..++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~ 146 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALD-----------------YGIK 146 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH-----------------HTCE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHHH-----------------cCCe
Confidence 9999999999998888888877643 235799999999999974 2333333222110 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 147 ~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 147 FMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp EEECCC---CCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=172.67 Aligned_cols=160 Identities=18% Similarity=0.268 Sum_probs=119.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
.....+||+++|.+|||||||++++.+..+.. ..++.+. ....+.+++ ..+.+|||||++.+...+..++..+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 35578999999999999999999999887653 3444443 334455555 578999999999999989999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++.++.....|+..+.. ....+.|+++|+||+|+.. ....++...... .. ...
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-~~---------------~~~ 164 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREITRQQGEKFAQ-QI---------------TGM 164 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-TS---------------TTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHHHHH-hc---------------CCC
Confidence 9999999999988888777766643 2335799999999999963 233333322221 11 235
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++||++|.|+++++++|.+.+
T Consensus 165 ~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 165 RFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=172.39 Aligned_cols=158 Identities=20% Similarity=0.224 Sum_probs=119.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..+.+||+++|.+|||||||++++.++.+.. ..+|.+... ..+..++ ..+.+||+||++. ...+..++..+|+++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4578999999999999999999999888763 344444332 2344444 6799999999987 667778889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++++++.....|+..+.......+.|+++|+||+|+.. ....++....... ..+++
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~ 166 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE-----------------LACAF 166 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTSEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------hCCeE
Confidence 9999999999988888887776544446899999999999963 3333332221110 12478
Q ss_pred EEEeeecCC-ChhHHHHhhhhhc
Q 029453 171 FMCSIVRKM-GYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~-gi~~~~~~i~~~l 192 (193)
+++||++|. |++++|++|.+.+
T Consensus 167 ~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 167 YECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp EECCTTTCTTCHHHHHHHHHHHH
T ss_pred EEECCCcCCcCHHHHHHHHHHHH
Confidence 999999999 9999999998754
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=169.33 Aligned_cols=156 Identities=20% Similarity=0.276 Sum_probs=116.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
..+||+++|++|||||||++++.+..+. ...++.+.. ...+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 4689999999999999999999988865 334444433 34445443 579999999999988888889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY-AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.. ....++...... . ..+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~----------------~~~~~~~ 143 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-E----------------LGIPFIE 143 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH-H----------------HTCCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHH-H----------------cCCeEEE
Confidence 999999988888888887775432 35789999999999953 233333222111 0 1136899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|+++++++|.+.+
T Consensus 144 ~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 144 SSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998754
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=167.81 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=117.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+.++|+++|++|||||||++++.++.+. ...++.+... ......+ ..+.+|||||++.+...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 5689999999999999999999988765 3344444332 2233333 5789999999999988888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDE-ALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|++++.++.....++..+.... ...+.|+++|+||+|+... ....+..... .. ..++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~-~~----------------~~~~~~ 144 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA-RT----------------WKCAFM 144 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH-HH----------------HTCEEE
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHH-HH----------------hCCeEE
Confidence 99999988888777776665432 2247899999999998632 2222222111 00 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|+++++++|.+.+
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 145 ETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp ECBTTTTBSHHHHHHHHHHTC
T ss_pred EecCCCCcCHHHHHHHHHHHH
Confidence 999999999999999998765
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=175.34 Aligned_cols=158 Identities=17% Similarity=0.235 Sum_probs=93.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--Ccc-ccCCCCC--cceeEEEeC----CeEEEEEEcCChhhhHHhHHhhhccC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE--RLV-QHQPTQY--PTSEELSIG----KIKFKAFDLGGHQMARRVWKDYYAKV 88 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~--~~~-~~~~t~~--~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (193)
.+.++|+++|++|||||||++++.+. .+. ...+|.+ .....+.++ ...+.+|||||++.+...+..++..+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46689999999999999999999988 555 3444554 344556665 46899999999999999988999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCC---CCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEA--LADVPFLILGNKIDIPY---AASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
|++++|+|++++.++.....|+..+..... ..+.|+++|+||+|+.. ....++.......
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~--------------- 162 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT--------------- 162 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH---------------
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH---------------
Confidence 999999999999999998888888865433 25799999999999965 2333333322211
Q ss_pred CCccEEEEEEeeec-CCChhHHHHhhhhhc
Q 029453 164 NVRPLEVFMCSIVR-KMGYGEGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~-~~gi~~~~~~i~~~l 192 (193)
..++++++||++ |.|++++|++|.+.+
T Consensus 163 --~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 163 --NTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp --TTCEEEECCC-------CHHHHHHHHHH
T ss_pred --cCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 114789999999 999999999998754
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=173.06 Aligned_cols=159 Identities=22% Similarity=0.230 Sum_probs=114.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
...+.+||+++|++|||||||++++.+..+. ...++.+. ....+..++ ..+.+|||||++.+...+..++..+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 4567899999999999999999999988865 33444443 234455554 579999999999999988999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--------CCCHHHHHHhhCCCccccCCCcccCCC
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--------AASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
+++|+|++++.++.....|+..+... ...+.|+++|+||+|+.. ....++..... ..
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~-~~------------- 168 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLA-MT------------- 168 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHH-HH-------------
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHH-HH-------------
Confidence 99999999999888888877766432 235789999999999851 12222211111 00
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++++++||++|.|++++|++|.+.+
T Consensus 169 ---~~~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 169 ---YGALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp ---HTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---cCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 124789999999999999999998765
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=170.83 Aligned_cols=158 Identities=19% Similarity=0.266 Sum_probs=120.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.+||+++|++|||||||++++.+..+.. ..++.+... ..+... ...+.+||+||++.+...+..++..+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 3467899999999999999999999888653 344544332 333443 36899999999998888888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+... ...+.|+++|+||+|+.. ....++....... ..++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 160 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLADD-----------------LGFE 160 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCe
Confidence 9999999999888888888777543 235799999999999963 2233332221110 1147
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 161 ~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 161 FFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-28 Score=165.46 Aligned_cols=157 Identities=17% Similarity=0.275 Sum_probs=119.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+.++|+++|++|||||||++++.+..+... .++.... ...+..++ ..+.+||+||++++...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 468999999999999999999998876543 3343322 23344444 5688999999998888888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+|++++.++.....|+..+.......+.|+++|+||+|+.+. ...++...... . ..++++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-~----------------~~~~~~~~ 144 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR-S----------------YGIPYIET 144 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-H----------------HTCCEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH-H----------------cCCeEEEe
Confidence 999999988888888877765443457999999999999752 33333222111 1 11368999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|+++++++|.+.+
T Consensus 145 Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 145 SAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=174.46 Aligned_cols=160 Identities=18% Similarity=0.311 Sum_probs=120.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.++|+++|++|||||||++++.+..+.. ..++.+.. ...+..++ ..+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 4578999999999999999999999888653 34444433 23344443 6899999999999888888889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCC---CCCCcEEEEeeCCCCCC-CCCHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEA---LADVPFLILGNKIDIPY-AASEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~pviiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
++|+|++++.++.....|+..+..... ..+.|+++|+||+|+.. ....++........ ..
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~ 148 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSK----------------NN 148 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHT----------------TS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhc----------------CC
Confidence 999999999988888888777754321 24789999999999973 23333333222101 22
Q ss_pred EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++++||++|.|+++++++|.+.+
T Consensus 149 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 149 IPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-28 Score=171.12 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=119.7
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
+.....++|+++|.+|||||||++++.++.+.. ..++.+... ..+... ...+.+|||||++.+...+..++..+|+
T Consensus 3 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 82 (199)
T 2gf0_A 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82 (199)
T ss_dssp --CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred ccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence 345678999999999999999999999887653 334444332 223333 3578999999999998888889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCC-CCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEA-LADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++.++.....++..+..... ..+.|+++|+||+|+... ...++...... . ..+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~----------------~~~ 145 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ-E----------------WKC 145 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH-H----------------HTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH-H----------------hCC
Confidence 9999999999888887777665544221 247899999999999743 23332222111 0 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|+++++++|.+.+
T Consensus 146 ~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 146 AFMETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHC
T ss_pred eEEEEecCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-28 Score=171.59 Aligned_cols=158 Identities=20% Similarity=0.283 Sum_probs=122.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.++|+++|++|||||||++++.+..+.. ..++.+.. ...+.+++ ..+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 4567999999999999999999999888763 34454433 34455555 5899999999999988888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+... ...++....... ..++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~ 146 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA-----------------NKMP 146 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH-----------------cCCe
Confidence 99999999999998888887775432 357999999999999742 233332222111 1146
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 147 ~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 147 FLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=169.06 Aligned_cols=159 Identities=18% Similarity=0.270 Sum_probs=111.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..+.++|+++|.+|||||||++++.+..+... .++.... ...+...+ ..+.+||+||++.+...+..++..+|+++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 34779999999999999999999998876533 3333322 23444554 56899999999999888889999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY-AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|++++.++.....|+..+.......+.|+++|+||+|+.. ....++..+.... ..++++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~ 160 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS-----------------YGIPFI 160 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-----------------HTCCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH-----------------cCCeEE
Confidence 9999999998888888777775543335799999999999974 3333333222111 113689
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|+++++++|.+.+
T Consensus 161 ~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 161 ETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-28 Score=175.19 Aligned_cols=160 Identities=20% Similarity=0.258 Sum_probs=119.6
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEe--C-C--eEEEEEEcCChhhhHHhHHhhhccC
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEELSI--G-K--IKFKAFDLGGHQMARRVWKDYYAKV 88 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~--~-~--~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (193)
......+||+++|.+|||||||++++.++.+.. ..++.+........ . + ..+.+|||||++.+...+..++..+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 345678999999999999999999999877653 33455444333332 1 2 6799999999999888888889999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
|++++|+|++++.++.....|+..+.... ..+.|+++|+||+|+... ...++....... .
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~ 147 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKG-----------------K 147 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTT-----------------C
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH-----------------c
Confidence 99999999999998888888777775432 246899999999999742 333333222221 2
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++++||++|.|+++++++|.+.+
T Consensus 148 ~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 148 NYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp CCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 25799999999999999999998754
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-28 Score=175.63 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=117.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCccee-EEE--eCCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTSE-ELS--IGKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~-~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
...+.+||+++|.+|||||||++++.++.+... .+|.+.... .+. .....+.+|||+|++.+...+..++..+|++
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 345789999999999999999999998887643 455544332 222 3347899999999999998888999999999
Q ss_pred EEEEeCCChhhHHH-HHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHHhhCCCccccCCC
Q 029453 92 VYLIDAYDKERFSE-SKRELDALLSDEALADVPFLILGNKIDIPYA--------------ASEDELRYHMGLTNFTTGKG 156 (193)
Q Consensus 92 i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 156 (193)
++|+|+++++++.. ...|+..+.... .+.|+++|+||+|+... ...++.......
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------- 172 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQ-------- 172 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH--------
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHH--------
Confidence 99999999999988 567777765432 58999999999999642 222221111100
Q ss_pred cccCCCCCCccE-EEEEEeeecCCC-hhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPL-EVFMCSIVRKMG-YGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~-~~~~~Sa~~~~g-i~~~~~~i~~~l 192 (193)
..+ .+++|||++|.| ++++|++|.+.+
T Consensus 173 ---------~~~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 173 ---------LGAEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp ---------HTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred ---------cCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 123 789999999998 999999997754
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-28 Score=173.76 Aligned_cols=158 Identities=20% Similarity=0.260 Sum_probs=118.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.++|+++|++|||||||++++.+..+.. ..++.+. ....+.+++ ..+.+|||||++.+...+..++..+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 4567999999999999999999999888763 3444443 334556665 6899999999999988888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.. ....++....... ..++
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~ 151 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE-----------------NQLL 151 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHH-----------------TTCE
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHH-----------------cCCE
Confidence 99999999999998888888775432 35789999999999963 3333333222111 1247
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 152 ~~~~Sa~~~~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 152 FTETSALNSENVDKAFEELINTI 174 (223)
T ss_dssp EEECCCC-CCCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998754
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=171.16 Aligned_cols=158 Identities=20% Similarity=0.283 Sum_probs=120.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+.++|+++|++|||||||++++.+..+. ...++.+. ....+.+++ ..+.+|||||++.+...+..++..+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 456799999999999999999999988765 34444443 334556666 6899999999999988888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+... ...++...... . ..+++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~----------------~~~~~ 158 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-E----------------LGIPF 158 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHH-H----------------HTCCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHH-H----------------cCCEE
Confidence 99999999988888888887775432 247899999999999532 23332222111 0 11368
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|.|+++++++|.+.+
T Consensus 159 ~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 159 IESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp EECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=169.47 Aligned_cols=172 Identities=17% Similarity=0.278 Sum_probs=119.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
....+||+++|.+|||||||++++.++.+.. +.+|.+... ..+..++ ..+.+|||||++.+...+..++..+|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 4578999999999999999999999888763 334444332 3455554 57899999999999888888899999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 93 YLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|+++++++.... .|+..+... ..+.|+++|+||+|+.......+....+.......... ..... ......++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-~~~~~-~~~~~~~~ 177 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEG-RDMAN-RISAFGYL 177 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHH-HHHHH-HTTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHH-HHHHH-hCCCcEEE
Confidence 999999999898884 555554332 14799999999999975422222111111111000000 00000 00123789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|+++++++|.+.+
T Consensus 178 ~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 178 ECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998753
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-28 Score=170.05 Aligned_cols=170 Identities=19% Similarity=0.244 Sum_probs=118.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+.++|+++|++|||||||++++.++.+.. ..+|.+... ..+..++ ..+.+||+||++++...+..++..+|++++|
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 96 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 96 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEE
Confidence 67899999999999999999999887653 344544332 3445544 6889999999999888888899999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 95 IDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 95 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+|+++++++.... .|+..+... ..+.|+++|+||+|+.......+.............. ...... .....+++++
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~-~~~~~~~~~~ 172 (194)
T 2atx_A 97 FSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ-GQKLAK-EIGACCYVEC 172 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHH-HHHHHH-HHTCSCEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHH-HHHHHH-HcCCcEEEEe
Confidence 9999999998887 566666543 2479999999999997432111111000000000000 000000 0011368999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|++|.+.+
T Consensus 173 Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-28 Score=174.61 Aligned_cols=174 Identities=17% Similarity=0.240 Sum_probs=118.0
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
....+.+||+++|.+|||||||++++.++.+.. ..+|.... ...+..++ ..+.+|||||++.+...+..++..+|+
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 345678999999999999999999999887763 33444322 22334444 566699999999998888889999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 91 VVYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
+++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.......+................ ... ......+
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~~~~~~~ 180 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL-AMA-KEIGAVK 180 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH-HHH-HHTTCSE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHH-HHH-HhcCCcE
Confidence 99999999999998886 5555554332 57999999999999754332222222211110000000 000 0002246
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|++++|++|.+.+
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 181 YLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998764
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-28 Score=171.69 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=115.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
...+.+||+++|.+|||||||++++.++.+.. +.+|.+... .....++ ..+.+|||||++.+... ..++..+|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 34578999999999999999999999888663 344554332 2334443 57889999999887764 5688999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEA--LADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
++|+|+++++++.....|+..+..... ..+.|+++|+||+|+.. ....++....... ..
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~ 158 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGR-----------------FG 158 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHH-----------------cC
Confidence 999999999999998888887764311 14789999999999962 3333333222111 12
Q ss_pred EEEEEEee-ecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSI-VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa-~~~~gi~~~~~~i~~~l 192 (193)
+.++++|| ++|.|++++|++|.+.+
T Consensus 159 ~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 159 CLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp CEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred CcEEEEeecCccccHHHHHHHHHHHH
Confidence 47899999 89999999999998764
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-28 Score=177.42 Aligned_cols=158 Identities=18% Similarity=0.301 Sum_probs=120.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeE--EEe--CCeEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEE--LSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
...+.+||+++|.+|||||||++++..+.+. .+.++.+.+... ... ....+.+|||||++.+...+..++..+|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 3457899999999999999999997665544 334555444332 233 34689999999999998888889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+++|+|++++.++.....|+..+.... .+.|+++|+||+|+.......+.. .... ...+.+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~-----~~~~------------~~~~~~ 151 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSI-----VFHR------------KKNLQY 151 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGC-----CHHH------------HHTCEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHH-----HHHH------------HcCCEE
Confidence 999999999999988888888886543 478999999999997433221110 0000 023578
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|.|++++|++|.+.+
T Consensus 152 ~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 152 YDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp EECBGGGTBTTTHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-27 Score=167.57 Aligned_cols=158 Identities=15% Similarity=0.164 Sum_probs=114.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCc--cccCCCCCcc--eeEEEeCC--eEEEEEEcCChhh-hHHhHHhhhccCCE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERL--VQHQPTQYPT--SEELSIGK--IKFKAFDLGGHQM-ARRVWKDYYAKVDA 90 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~--~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d~ 90 (193)
.+.+||+++|.+|||||||++++.+... ....++.+.. ...+.+++ ..+.+|||+|++. +......++..+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 4668999999999999999999986543 3333333333 34455555 4567899999876 44455566778999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|++++++|.....|+..+.......++|+++|+||+|+.. ....++... +... ..+
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~-~a~~----------------~~~ 177 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA-CAVV----------------FDC 177 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH-HHHH----------------HTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHH-HHHH----------------cCC
Confidence 999999999999999888887775433335799999999999963 333332111 1000 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|++++|++|.+.+
T Consensus 178 ~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 178 KFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=171.40 Aligned_cols=173 Identities=18% Similarity=0.261 Sum_probs=102.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
...+.+||+++|.+|||||||++++.++.+.. ..+|.... ...+..++ ..+.+|||||++.+...+..++..+|++
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 34578999999999999999999999887653 33444322 23344444 4789999999999998888899999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 92 VYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.......+............... ..... ......+
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-~~~~~-~~~~~~~ 185 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRG-QEMAR-SVGAVAY 185 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHH-HHHHH-HTTCSEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHH-HHHHH-hcCCCEE
Confidence 9999999999998876 5666654322 5789999999999975432222221111111000000 00000 0012389
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|.|++++|++|.+.+
T Consensus 186 ~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 186 LECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998753
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=169.76 Aligned_cols=159 Identities=14% Similarity=0.205 Sum_probs=112.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
...+.++|+++|++|||||||++++.++.+.. ..+|.+... ..+..++ ..+.+|||||++.+...+..++.++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 35678999999999999999999999887653 334444322 3445555 4677999999999888888889999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHHhhCCCccccCCC
Q 029453 92 VYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAA--------------SEDELRYHMGLTNFTTGKG 156 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~ 156 (193)
++|+|+++++++.... .|+..+.... .+.|+++|+||+|+.... ..++..... ...
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~------ 166 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA-EEI------ 166 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH-HHH------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHH-Hhc------
Confidence 9999999999998886 5666665432 479999999999996421 111111100 000
Q ss_pred cccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|++++|++|.+.+
T Consensus 167 ---------~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 167 ---------KAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp ---------TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------CCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 123789999999999999999997753
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=166.87 Aligned_cols=171 Identities=16% Similarity=0.261 Sum_probs=118.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.+.++|+++|++|||||||++++.++.+.. ..+|..... ..+..++ ..+.+|||||++.+...+..++..+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 467899999999999999999999887653 334443322 3344444 567799999999998888888999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 94 LIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.......+............... ..... .....++++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-~~~~~-~~~~~~~~~ 158 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG-LAMAK-EIGAVKYLE 158 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH-HHHHH-HTTCSEEEE
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHH-HHHHH-hcCCcEEEE
Confidence 99999999898877 5666554322 3799999999999964322211111111111000000 00000 001138999
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|+++++++|.+.+
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 159 CSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred ecCCCccCHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-28 Score=169.59 Aligned_cols=158 Identities=20% Similarity=0.251 Sum_probs=116.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..+.+||+++|++|||||||++++.+..+.. +.+|.+... ..+..+ ...+.+|||||++.+...+..++..+|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 4578999999999999999999999887753 344544332 233333 367899999999998888888899999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHHhhCCCccccCCCc
Q 029453 93 YLIDAYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIPYA--------------ASEDELRYHMGLTNFTTGKGN 157 (193)
Q Consensus 93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~ 157 (193)
+|+|+++++++... ..|+..+... ..+.|+++|+||+|+... ...++...... ..
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~------- 153 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK-QI------- 153 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH-HH-------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHH-Hc-------
Confidence 99999999999887 5666555432 247999999999999632 11111111100 00
Q ss_pred ccCCCCCCccEEEEEEeee-cCCChhHHHHhhhhhc
Q 029453 158 VNLDNTNVRPLEVFMCSIV-RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~-~~~gi~~~~~~i~~~l 192 (193)
...+++++||+ ++.|++++|++|.+.+
T Consensus 154 --------~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 154 --------GAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp --------TCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred --------CCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 12478999999 6899999999998753
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=164.28 Aligned_cols=163 Identities=18% Similarity=0.204 Sum_probs=118.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CC--CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QP--TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...+.++|+++|++|||||||++++.+..+... .+ +.......+.+++..+.+|||||++.+...+..++..+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 456889999999999999999999998877632 23 334445667788899999999999988887778888999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+|++++..... ...+..+.. .+.|+++|+||+|+... ..+++...+..... .........++++
T Consensus 84 ~v~d~~~~~~~~~-~~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 149 (178)
T 2lkc_A 84 LVVAADDGVMPQT-VEAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNL--------VPEEWGGDTIFCK 149 (178)
T ss_dssp EEEETTCCCCHHH-HHHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTC--------CBTTTTSSEEEEE
T ss_pred EEEECCCCCcHHH-HHHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCc--------ChhHcCCcccEEE
Confidence 9999988432222 222333321 47899999999999753 33444443322110 0011112378999
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|+++++++|.+.+
T Consensus 150 ~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 150 LSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp CCSSSSHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHhh
Confidence 99999999999999998754
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=168.42 Aligned_cols=172 Identities=16% Similarity=0.262 Sum_probs=116.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...++||+++|.+|||||||++++.++.+.. ..+|.+... ..+..++ ..+.+|||||++.+...+..++..+|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 3567899999999999999999999888763 334443332 3345554 57899999999998888888899999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 93 YLIDAYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|+++++++... ..|+..+... ..+.|+++|+||+|+.......+....+.......... ...+. ......++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-~~~~~-~~~~~~~~ 177 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDG-RAMAV-RIQAYDYL 177 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH-HHHHH-HTTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHH-HHHHH-hcCCCEEE
Confidence 99999999888887 4555555332 14799999999999974322222222221111000000 00000 00123789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|+++++++|.+.+
T Consensus 178 ~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 178 ECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998753
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-28 Score=170.93 Aligned_cols=154 Identities=16% Similarity=0.218 Sum_probs=107.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce---eEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS---EELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~---~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.+.+||+++|++|||||||++++.++.+.. ..+|.+... ..+......+.+|||||++.+...+..++..+|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 467999999999999999999999887653 333333211 1122234567799999999998888889999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC------------HHH---HHHhhCCCccccCCCc
Q 029453 94 LIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAAS------------EDE---LRYHMGLTNFTTGKGN 157 (193)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~------------~~~---~~~~~~~~~~~~~~~~ 157 (193)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+... .++ +...+
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------- 152 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLI----------- 152 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHH-----------
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHc-----------
Confidence 99999999998887 5666554322 4799999999999864321 111 11111
Q ss_pred ccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 158 VNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|++++|++|.+.+
T Consensus 153 --------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 153 --------GAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp --------TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 113789999999999999999998754
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-28 Score=173.39 Aligned_cols=157 Identities=16% Similarity=0.210 Sum_probs=116.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.+.+||+++|++|||||||++++.++.+.. +.+|.+... ..+..++ ..+.+|||||++.+...+..++..+|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 467999999999999999999999888653 344554333 2344443 689999999999998888889999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC----------CHHHHHHhhCCCccccCCCcccCCC
Q 029453 94 LIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAA----------SEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
|+|+++++++.... .|+..+.... .+.|+++|+||+|+.... ..++...... ..
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~-~~------------ 151 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK-QI------------ 151 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH-HH------------
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH-Hc------------
Confidence 99999999998876 5666664332 479999999999986431 1222111110 00
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|++++|++|.+.+
T Consensus 152 ---~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 152 ---GAAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp ---TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---CCceEEEccCCCCCCHHHHHHHHHHHH
Confidence 113789999999999999999998753
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-28 Score=172.83 Aligned_cols=154 Identities=21% Similarity=0.324 Sum_probs=113.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CC--CCCcceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QP--TQYPTSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~--t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
.+.+||+++|.+|||||||++++.+..+... .+ +.......+..++ ..+.+|||||++.+...+..++..+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 4679999999999999999999998876532 23 3334455566665 67999999999998888888899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-----CHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA-----SEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|+|++++.++.....|+..+.. ....+.|+++|+||+|+.... ...++...++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-------------------- 169 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDR-YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-------------------- 169 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHS-CC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTT--------------------
T ss_pred EEEECCCHHHHHHHHHHHHHHHH-hccCCCCEEEEEECccCCccccCCHHHHHHHHHHcC--------------------
Confidence 99999999999999888888753 334579999999999996321 1112222222
Q ss_pred EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++++||++|.|++++|++|.+.+
T Consensus 170 ~~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 170 IPFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp CCBCCCCC---HHHHHHHHHHTTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999998865
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-27 Score=168.12 Aligned_cols=158 Identities=20% Similarity=0.248 Sum_probs=116.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..+.+||+++|++|||||||++++.+..+.. +.+|.+... ..+..+ ...+.+|||||++.+...+..++..+|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 4578999999999999999999999988764 344544332 233333 368999999999998888888899999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHHhhCCCccccCCCc
Q 029453 93 YLIDAYDKERFSES-KRELDALLSDEALADVPFLILGNKIDIPYA--------------ASEDELRYHMGLTNFTTGKGN 157 (193)
Q Consensus 93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~ 157 (193)
+|+|+++++++... ..|+..+.... .+.|+++|+||+|+... ...++...... ..
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~------- 174 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK-QI------- 174 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH-HH-------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHH-Hc-------
Confidence 99999999999887 56666654322 47999999999999632 11111111000 00
Q ss_pred ccCCCCCCccEEEEEEeee-cCCChhHHHHhhhhhc
Q 029453 158 VNLDNTNVRPLEVFMCSIV-RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~-~~~gi~~~~~~i~~~l 192 (193)
....++++||+ ++.|++++|++|.+.+
T Consensus 175 --------~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 175 --------GAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp --------TCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred --------CCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 12478999999 6899999999998753
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=155.73 Aligned_cols=148 Identities=30% Similarity=0.350 Sum_probs=107.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhH------HhHHhhhc--c
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMAR------RVWKDYYA--K 87 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 87 (193)
+.++|+++|++|||||||++++.+..+. ...+ |.......+.+++..+.+|||||++.+. .....++. .
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 4689999999999999999999987643 2333 3444556677788999999999987653 33344554 7
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CC--CHHHHHHhhCCCccccCCCcccCCCC
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AA--SEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
++++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+.. .. ..+++...++
T Consensus 82 ~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------------- 138 (165)
T 2wji_A 82 PDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG---------------- 138 (165)
T ss_dssp CSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT----------------
T ss_pred CCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC----------------
Confidence 999999999988643 3445555543 3789999999999852 11 2233433332
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
++++++||++|.|++++|++|.+.++
T Consensus 139 ----~~~~~~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 139 ----VKVVPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp ----SCEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred ----CCEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 35799999999999999999988763
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-26 Score=160.75 Aligned_cols=158 Identities=15% Similarity=0.175 Sum_probs=110.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCcc--eeEEEeCCe--EEEEEEcCChhh-hHHhHHhhhccCCE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDER--LVQHQPTQYPT--SEELSIGKI--KFKAFDLGGHQM-ARRVWKDYYAKVDA 90 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~--~~~~~~t~~~~--~~~~~~~~~--~~~~~D~~g~~~-~~~~~~~~~~~~d~ 90 (193)
.+.+||+++|.+|||||||++++.+.. +....++.+.. ...+.+++. .+.+|||+|.+. +......++..+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 567899999999999999999998643 23332333222 344555554 567899999765 33344556778999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|+++.+++.....|+..+.......+.|+++|+||+|+.. ....++... +... ..+
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~-~a~~----------------~~~ 146 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRA-XAVV----------------FDX 146 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHH-HHHH----------------TTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHH-HHHH----------------hCC
Confidence 999999999999998888877765433335799999999999863 223222111 1000 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|++++|++|.+.+
T Consensus 147 ~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 147 KFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ceEEeccccCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=158.56 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=105.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--cCC--CCCcceeEEEeCCeEEEEEEcCChhh-------hHHhHHhhhccCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ--HQP--TQYPTSEELSIGKIKFKAFDLGGHQM-------ARRVWKDYYAKVD 89 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 89 (193)
+||+++|++|||||||++++.+..... ..+ +.......+...+..+.+|||||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 589999999999999999999887432 222 33445566777888999999999876 4555667788999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++++|+|++++.+. ...++..++.. .+.|+++|+||+|+... .++..+.. .. ...+
T Consensus 82 ~~i~v~d~~~~~~~--~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~--~~---------------~~~~ 137 (161)
T 2dyk_A 82 VVLFAVDGRAELTQ--ADYEVAEYLRR---KGKPVILVATKVDDPKH--ELYLGPLY--GL---------------GFGD 137 (161)
T ss_dssp EEEEEEESSSCCCH--HHHHHHHHHHH---HTCCEEEEEECCCSGGG--GGGCGGGG--GG---------------SSCS
T ss_pred EEEEEEECCCcccH--hHHHHHHHHHh---cCCCEEEEEECcccccc--hHhHHHHH--hC---------------CCCC
Confidence 99999999985322 22333334333 47899999999999643 11111110 00 1125
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|.|+++++++|.+.+
T Consensus 138 ~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 138 PIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp CEECBTTTTBSHHHHHHHHHHHC
T ss_pred eEEEecccCCChHHHHHHHHHhC
Confidence 79999999999999999998876
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=164.55 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=112.0
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCc--ceeEEE---eCCeEEEEEEcCChhhhHHhH---Hhhhc
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYP--TSEELS---IGKIKFKAFDLGGHQMARRVW---KDYYA 86 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~--~~~~~~---~~~~~~~~~D~~g~~~~~~~~---~~~~~ 86 (193)
...++.+||+++|.+|||||||++++.+........+... ...... .....+.+|||||++.+.... ..+++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 4466889999999999999999998887543332222222 222222 345789999999999887665 78899
Q ss_pred cCCEEEEEEeCCCh--hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHHhhCCCccccCCCcccC
Q 029453 87 KVDAVVYLIDAYDK--ERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE----DELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 87 ~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 160 (193)
.+|++++|+|++++ +++..+..|+..+... ..+.|+++|+||+|+.+.... .++.............
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~----- 167 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL----- 167 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh-----
Confidence 99999999999997 5666677777766322 258999999999998642211 1111111111100000
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....+.++++||++ .|++++|+.|.+.+
T Consensus 168 ---~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 168 ---EKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp ---TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred ---hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 01346899999999 99999999998765
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-26 Score=160.21 Aligned_cols=159 Identities=13% Similarity=0.159 Sum_probs=110.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--Ccc-ccCCCCCcceeEEEe-------CCeEEEEEEcCChhhhHHhHHhhhccCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE--RLV-QHQPTQYPTSEELSI-------GKIKFKAFDLGGHQMARRVWKDYYAKVD 89 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~--~~~-~~~~t~~~~~~~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d 89 (193)
++||+++|++|||||||++++.+. .+. .+.+|.+........ ....+.+|||+|++++...+..++..++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 333 234555544333221 3568999999999999888888889999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH----HHHHhhCCCccccCCCcccCCCCC
Q 029453 90 AVVYLIDAYDK-ERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASED----ELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 90 ~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
++++|+|++++ .++.....|+..+.... .+.|+++|+||+|+....... +....+.... ..
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~------------~~ 147 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKR------------GF 147 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCT------------TS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhc------------CC
Confidence 99999999987 57888888888775432 478999999999996422211 1112221111 00
Q ss_pred CccEEEEEEeeecCC-ChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKM-GYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~-gi~~~~~~i~~~l 192 (193)
....+++++||+++. |++++++.|.+.+
T Consensus 148 ~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 148 PAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp CEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred cchhheEEEecccCchhHHHHHHHHHHHH
Confidence 012358999999996 9999999987643
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-28 Score=172.81 Aligned_cols=173 Identities=16% Similarity=0.255 Sum_probs=117.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc-eeEEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT-SEELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
...+.+||+++|.+|||||||++++.++.+... .+|.... ...+.. ....+.+|||||++++...+..++..+|++
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 346789999999999999999999998776532 3333222 122222 345677999999999998888899999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 92 VYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
++|+|++++.++.... .|+..+.. . ..+.|+++|+||+|+.......+............. ....... .....++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~-~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~-~~~~~~~-~~~~~~~ 181 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRH-H-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYP-QGLAMAK-EIGAVKY 181 (204)
Confidence 9999999998888876 55555432 2 137999999999999743222211111110010000 0000000 0122378
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++||++|.|+++++++|.+.+
T Consensus 182 ~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 182 LECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999999998754
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=161.03 Aligned_cols=160 Identities=15% Similarity=0.140 Sum_probs=109.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCC--CCCcceeEEEeCCeEEEEEEcCCh------hhh---HHhHHhh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQP--TQYPTSEELSIGKIKFKAFDLGGH------QMA---RRVWKDY 84 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~------~~~---~~~~~~~ 84 (193)
..+.++|+++|.+|||||||++++.+..+.. ..+ |...........+..+.+|||||+ +.. ...+..+
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 105 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL 105 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence 3578999999999999999999999887652 111 334445556667889999999998 331 1223445
Q ss_pred hccCCEEEEEEeCCChhhHH--HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHH--HHHhhCCCccccCCCcc
Q 029453 85 YAKVDAVVYLIDAYDKERFS--ESKRELDALLSDEALADVPFLILGNKIDIPYAAS--EDE--LRYHMGLTNFTTGKGNV 158 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~~~--~~~~~~~~~~~~~~~~~ 158 (193)
...+|++++|+|++++.++. ....++..+... ..+.|+++|+||+|+..... .+. ....+....
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------- 175 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNV-------- 175 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHC--------
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhc--------
Confidence 67889999999999986654 233455555332 24799999999999974322 211 111110000
Q ss_pred cCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 159 NLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...++++++||++|.|++++|++|.+.+
T Consensus 176 ------~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 176 ------KNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp ------CSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------CCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 0126899999999999999999998754
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-26 Score=157.75 Aligned_cols=150 Identities=19% Similarity=0.225 Sum_probs=107.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhhh----HH----hHHhhhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMA----RR----VWKDYYA 86 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~----~~----~~~~~~~ 86 (193)
+..+|+++|++|||||||++++.+.... ...+ |.......+.+++..+.+|||||++.+ .. ....++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 5679999999999999999999987643 2222 334455677788888999999997542 11 1123578
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
.+|++++|+|++++.++. ...|+..+... ...++|+++|+||+|+..... .... ..
T Consensus 83 ~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~----------~~~~------------~~ 138 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVD-PAEIWPEFIAR-LPAKLPITVVRNKADITGETL----------GMSE------------VN 138 (172)
T ss_dssp TCSEEEEEEETTTCCCCS-HHHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC----------EEEE------------ET
T ss_pred hCCEEEEEEECCCCCCHH-HHHHHHHHHHh-cccCCCEEEEEECccCCcchh----------hhhh------------cc
Confidence 899999999999876654 33455555432 234799999999999853210 0000 02
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|++++|++|.+.+
T Consensus 139 ~~~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 139 GHALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999998764
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-25 Score=166.35 Aligned_cols=158 Identities=20% Similarity=0.200 Sum_probs=116.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeC-CeEEEEEEcCChhh----------hHHhH
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIG-KIKFKAFDLGGHQM----------ARRVW 81 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~~D~~g~~~----------~~~~~ 81 (193)
..+.-.|+++|.+|||||||+|++.+.+.....+ |..........+ +..+.+|||||+.. +....
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 4566799999999999999999999988653322 444455566777 89999999999843 33555
Q ss_pred HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-CCCCHHHHHHhhCCCccccCCCcccC
Q 029453 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP-YAASEDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 82 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
..++..+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+. ......+....+....
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~---------- 152 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH---------- 152 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC----------
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc----------
Confidence 6678899999999999988766665555555533 478999999999997 3333333333222111
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....+++++||++|.|+++++++|.+.+
T Consensus 153 ----~~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 153 ----PELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp ----TTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred ----cCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 0124789999999999999999998765
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-25 Score=165.59 Aligned_cols=154 Identities=21% Similarity=0.201 Sum_probs=111.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc--CC--CCCcceeEEEeCCeEEEEEEcCChhh--------hHHhHHhhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH--QP--TQYPTSEELSIGKIKFKAFDLGGHQM--------ARRVWKDYY 85 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 85 (193)
.+..+|+++|.+|||||||+|++.+.+.... .+ |..........++..+.+|||||+.. +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 4567899999999999999999999886532 22 33334445567789999999999765 445556778
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
..+|++++|+|++++.+. ...++...+.... .+.|+++|+||+|+..... ..+....+ .
T Consensus 85 ~~ad~il~VvD~~~~~~~--~~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~-------------- 144 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTP--EDELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL---L-------------- 144 (301)
T ss_dssp SSCSEEEEEEETTSCCCH--HHHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT---S--------------
T ss_pred hcCCEEEEEEECCCCCCh--HHHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh---c--------------
Confidence 899999999999886332 2344444433321 4799999999999974322 22222222 1
Q ss_pred CccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 145 -~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 145 -PEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp -TTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred -CcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 224689999999999999999998754
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=158.31 Aligned_cols=159 Identities=20% Similarity=0.264 Sum_probs=107.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccee-EEEeCCeEEEEEEcCC----------hhhhHHhHHhhhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSE-ELSIGKIKFKAFDLGG----------HQMARRVWKDYYA 86 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~g----------~~~~~~~~~~~~~ 86 (193)
...++|+++|++|||||||++++.+.......++.+.+.. .....+..+.+||||| ++.+...+..++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFK 100 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHh
Confidence 4678999999999999999999999885554444433221 1222244688999999 6667777776666
Q ss_pred cC---CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 87 KV---DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 87 ~~---d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
.+ +++++|+|+++..+.... .+...+.. .+.|+++|+||+|+..........+...... .
T Consensus 101 ~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-~----------- 163 (195)
T 3pqc_A 101 NRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVF-S----------- 163 (195)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHH-H-----------
T ss_pred cCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHH-h-----------
Confidence 55 999999999875332221 12222222 2789999999999975443333322221111 0
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
....++++++||++|.|++++|++|.+.+.
T Consensus 164 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 164 KYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp SSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred hcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 002257899999999999999999988753
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-25 Score=157.22 Aligned_cols=154 Identities=18% Similarity=0.250 Sum_probs=105.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcc--eeEEEeCCeEEEEEEcCC----------hhhhHHhHHhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPT--SEELSIGKIKFKAFDLGG----------HQMARRVWKDY 84 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~~ 84 (193)
.+.++|+++|++|||||||++++.+..+. ...++.+.+ ......+ ..+.+||||| ++.+...+..+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 46799999999999999999999988743 333333222 2223333 3689999999 77777777777
Q ss_pred hccC---CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH----HHHhhCCCccccCCCc
Q 029453 85 YAKV---DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE----LRYHMGLTNFTTGKGN 157 (193)
Q Consensus 85 ~~~~---d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~ 157 (193)
+..+ |++++|+|++++.+..... +...+.. .+.|+++|+||+|+.......+ +.+.+...
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-------- 166 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID-------- 166 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC--------
T ss_pred HhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHccc--------
Confidence 7766 9999999999875554422 2222222 4789999999999975433322 33223211
Q ss_pred ccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 158 VNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
...+++++||++|.|+++++++|.+.++
T Consensus 167 --------~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 167 --------PEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp --------TTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred --------CCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 2358999999999999999999988753
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-26 Score=159.38 Aligned_cols=157 Identities=17% Similarity=0.118 Sum_probs=104.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEeCCeEEEEEEcCC-----------hhhhHHhHHhhhcc-
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGG-----------HQMARRVWKDYYAK- 87 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~~~- 87 (193)
+||+++|++|||||||++++.+..+.. ..++........... .+.+||||| ++.+...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999887653 334444444445554 688999999 67777776666665
Q ss_pred CCEEEEEEeCCChhhHHHH-HHHHHH--------HHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCC
Q 029453 88 VDAVVYLIDAYDKERFSES-KRELDA--------LLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKG 156 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 156 (193)
++++++|+++.+..++... ..|... +.......+.|+++|+||+|+.... ..+++...++..+.
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~----- 154 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLS----- 154 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGG-----
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhh-----
Confidence 5544444454444455444 233221 1111111479999999999997543 23335555555330
Q ss_pred cccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....++++||++|.|++++|++|.+.+
T Consensus 155 --------~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 155 --------EIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp --------GHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------ccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 0124689999999999999999998754
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-25 Score=166.29 Aligned_cols=156 Identities=17% Similarity=0.233 Sum_probs=115.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc----ccCCCCCcceeEEEe-CCeEEEEEEcCChhhh-----HHhHHhhhccC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV----QHQPTQYPTSEELSI-GKIKFKAFDLGGHQMA-----RRVWKDYYAKV 88 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~----~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~-----~~~~~~~~~~~ 88 (193)
..+||+++|++|||||||++++.++... ...+|.+.....+.+ ++..+.+|||||++.+ ...+..+++.+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 4689999999999999999999887432 244577777776665 5789999999999988 56777788999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCCCCCHH--------H---HHHhhCCCccccCCC
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSD-EALADVPFLILGNKIDIPYAASED--------E---LRYHMGLTNFTTGKG 156 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~Dl~~~~~~~--------~---~~~~~~~~~~~~~~~ 156 (193)
|++++|+|+++++++..+..|...+... ...++.|+++|+||+|+....... + +...++.
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~-------- 153 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF-------- 153 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC--------
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC--------
Confidence 9999999999998888776553333221 112579999999999997421221 1 1111111
Q ss_pred cccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..++++++||++ .|+.++|..+.+.+
T Consensus 154 ---------~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 154 ---------PNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp ---------CSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred ---------CCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 136899999999 89999998887643
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-25 Score=163.68 Aligned_cols=144 Identities=22% Similarity=0.265 Sum_probs=106.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHH----------hHHhhh--
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARR----------VWKDYY-- 85 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~-- 85 (193)
.+|+++|++|||||||+|++.+.... ...+ |.......+.+++..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 58999999999999999999988644 2333 44456677788889999999999865542 444556
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC----CCHHHHHHhhCCCccccCCCcccCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA----ASEDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
..+|++++|+|+++.++...+. ..+. . .+.|+++|+||+|+... ...+++...++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~---~~l~-~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg-------------- 140 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLT---SQLF-E---LGKPVVVALNMMDIAEHRGISIDTEKLESLLG-------------- 140 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHH---HHHT-T---SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------------
T ss_pred CCCCEEEEEeeCCCchhHHHHH---HHHH-H---cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------------
Confidence 7899999999999865443332 2332 2 37999999999998622 22233444443
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
++++++||++|.|+++++++|.+.
T Consensus 141 ------~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 ------CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ------SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ------CCEEEEECCCCCCHHHHHHHHHhh
Confidence 367999999999999999999763
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-25 Score=164.74 Aligned_cols=147 Identities=24% Similarity=0.251 Sum_probs=108.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhH----------HhHHhhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMAR----------RVWKDYY 85 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~~~ 85 (193)
++++|+++|++|||||||+|++.+.... ...+ |.......+...+..+.+|||||+..+. .....++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 5789999999999999999999988754 2233 4445566777778899999999976544 1222333
Q ss_pred --ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC----CCHHHHHHhhCCCccccCCCccc
Q 029453 86 --AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA----ASEDELRYHMGLTNFTTGKGNVN 159 (193)
Q Consensus 86 --~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~ 159 (193)
+.+|++++|+|+++.++......++... +.|+++|+||+|+... ...+++...++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg------------ 142 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARLG------------ 142 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHHT------------
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhcC------------
Confidence 6899999999999875544444444433 7899999999998632 12233444443
Q ss_pred CCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 160 LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++++||++|.|+++++++|.+.+
T Consensus 143 --------~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 143 --------CPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp --------SCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred --------CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998754
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=160.91 Aligned_cols=147 Identities=22% Similarity=0.280 Sum_probs=109.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHH------hHHhhh--c
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARR------VWKDYY--A 86 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~ 86 (193)
.+.++|+++|++|||||||+|++.+..+. ...+ |.......+...+..+.+|||||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 46789999999999999999999987754 3333 44455566777789999999999875532 223444 5
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--C--CCHHHHHHhhCCCccccCCCcccCCC
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--A--ASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
.+|++++|+|+++.++. ..++..+.. .+.|+++|+||+|+.. . ....++...++
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------------- 140 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------------- 140 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC---------------
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC---------------
Confidence 89999999999987543 334455543 3799999999999852 1 22334444443
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
++++++||++|.|+++++++|.+.
T Consensus 141 -----~~vi~~SA~~g~gi~el~~~i~~~ 164 (258)
T 3a1s_A 141 -----IPVVFTSSVTGEGLEELKEKIVEY 164 (258)
T ss_dssp -----SCEEECCTTTCTTHHHHHHHHHHH
T ss_pred -----CCEEEEEeeCCcCHHHHHHHHHHH
Confidence 357999999999999999998764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=151.20 Aligned_cols=148 Identities=28% Similarity=0.325 Sum_probs=109.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhH------HhHHhhhc--
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMAR------RVWKDYYA-- 86 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~-- 86 (193)
.+.++|+++|++|||||||++++.+..+. ...+ +.......+.+++..+.+|||||++.+. .....++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 46789999999999999999999987643 3333 3334556677888999999999987653 33445553
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC----CCHHHHHHhhCCCccccCCCcccCCC
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA----ASEDELRYHMGLTNFTTGKGNVNLDN 162 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
.++++++|+|.++. .....++..+.. .+.|+++|+||+|+... ...+++.+.++
T Consensus 85 ~~~~~i~v~d~~~~---~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------------- 142 (188)
T 2wjg_A 85 KPDLVVNIVDATAL---ERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------------- 142 (188)
T ss_dssp CCSEEEEEEEGGGH---HHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT---------------
T ss_pred CCCEEEEEecchhH---HHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC---------------
Confidence 59999999999764 445556666643 47899999999998521 22333443332
Q ss_pred CCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 163 TNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 163 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++++||+++.|+++++++|.+.+
T Consensus 143 -----~~~~~~Sa~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 143 -----VKVVPLSAAKKMGIEELKKAISIAV 167 (188)
T ss_dssp -----SCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred -----CCeEEEEecCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998754
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-25 Score=159.21 Aligned_cols=160 Identities=18% Similarity=0.242 Sum_probs=105.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCc-ccc--CC--CCCcceeEEE-eCCeEEEEEEcCC----------hhhhHHhH
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERL-VQH--QP--TQYPTSEELS-IGKIKFKAFDLGG----------HQMARRVW 81 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~-~~~--~~--t~~~~~~~~~-~~~~~~~~~D~~g----------~~~~~~~~ 81 (193)
...++|+++|.+|||||||++++.+... ... .+ |......... ..+..+.+||||| ++.+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 4678999999999999999999998873 222 22 2222222232 3457899999999 34555556
Q ss_pred Hhhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH----HHHhhCCCccccC
Q 029453 82 KDYYAK---VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE----LRYHMGLTNFTTG 154 (193)
Q Consensus 82 ~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~ 154 (193)
..++.. +|++++|+|++++.+ .....+...+.. .+.|+++|+||+|+.......+ +...+.... ...
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~-~~~ 180 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR-DAG 180 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH-HHT
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh-hcc
Confidence 666655 788999999987532 222333333333 4789999999999975333222 222221110 000
Q ss_pred CCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 155 KGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....+++++||++|.|+++++++|.+.+
T Consensus 181 ---------~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 181 ---------YAGKLTVQLFSALKRTGLDDAHALIESWL 209 (223)
T ss_dssp ---------CCSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ---------cCCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence 01346899999999999999999998765
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-25 Score=166.95 Aligned_cols=172 Identities=17% Similarity=0.233 Sum_probs=117.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCCe--EEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGKI--KFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~~--~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..+.++|+++|.+|+|||||++++.++.+.. ..+|.... ...+..++. .+.+|||||++.+...+..++..+|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 4567999999999999999999999887653 33444332 234455554 5569999999999888888899999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 93 YLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+|++++.++.... .|+..+.... .++|+++|+||+|+.......+................ .... .....+++
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-~~~~~~~~ 307 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL-AMAK-EIGAVKYL 307 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH-HHHH-HTTCSEEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHH-HHHH-HcCCcEEE
Confidence 999999999888876 4555554322 38999999999998643211111111111110000000 0000 00113799
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 308 ~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 308 ECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EecCCCCcCHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-24 Score=151.03 Aligned_cols=157 Identities=22% Similarity=0.296 Sum_probs=117.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCC--cceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQY--PTSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...++|+++|++|||||||++++.+..+.. +.+|.+ .....+.+++ ..+.+||++|++.+......+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 457899999999999999999999987653 334443 3345566666 46778999999988877777888999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++..++.....|+..+... ...+.|+++++||+|+.. ....++....... ..+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-----------------~~~~~ 144 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-----------------NNLSF 144 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHH-----------------cCCeE
Confidence 999999988887777777665432 234789999999999962 2333332221111 12467
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+.+||+++.|+++++++|.+.+
T Consensus 145 ~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 145 IETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 8899999999999999997754
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-24 Score=159.02 Aligned_cols=146 Identities=26% Similarity=0.362 Sum_probs=104.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCc-cccCC--CCCcceeEEEeCCeEEEEEEcCChhhhH------HhHHhhhc--c
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERL-VQHQP--TQYPTSEELSIGKIKFKAFDLGGHQMAR------RVWKDYYA--K 87 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 87 (193)
..++|+++|++|||||||+|++.+... ....+ |.......+.. +..+.+|||||+..+. .....++. .
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 357999999999999999999998763 33334 33333344444 6789999999987653 34445554 6
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--C--CCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--A--ASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+|++++|+|+++.++. ..+...+.. .+.|+++|+||+|+.. . ....++...++
T Consensus 81 ~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg---------------- 137 (272)
T 3b1v_A 81 ADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG---------------- 137 (272)
T ss_dssp CSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT----------------
T ss_pred CCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC----------------
Confidence 9999999999886543 334444433 4799999999999852 1 22334444443
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++++||++|.|+++++++|.+.+
T Consensus 138 ----~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 138 ----VPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp ----SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred ----CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 3579999999999999999997643
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-24 Score=173.67 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhC-----CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEE------------eCCe
Q 029453 3 LVDWFYGILVSLG-----LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELS------------IGKI 64 (193)
Q Consensus 3 ~~~~~~~~~~~~~-----~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~------------~~~~ 64 (193)
+..|++.+..... ...+.+||+++|.+|||||||++++.+..+. ...+|.+....... ..+.
T Consensus 19 i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~ 98 (535)
T 3dpu_A 19 VRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98 (535)
T ss_dssp HHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTC
T ss_pred HHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceE
Confidence 5677777665221 3567899999999999999999999988865 33445554443221 1257
Q ss_pred EEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHH
Q 029453 65 KFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDEL 142 (193)
Q Consensus 65 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~ 142 (193)
.+.+||+||++.+......++..+|++++|+|+++.+.. ..|+..+.... .+.|+++|+||+|+... ...+++
T Consensus 99 ~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~~~---~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~ 173 (535)
T 3dpu_A 99 LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNK---HYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKI 173 (535)
T ss_dssp EEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGGGH---HHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHH
T ss_pred EEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCchhH---HHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHH
Confidence 899999999999888888888999999999999876544 44444443321 36899999999999743 233334
Q ss_pred HHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 143 RYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....... ..+++++||++|.|+++++++|.+.+
T Consensus 174 ~~~~~~~-----------------~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 174 NERFPAI-----------------ENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp HHHCGGG-----------------TTCEEECCC-----CTTHHHHHHHHH
T ss_pred HHHHHhc-----------------CCceEEEecCcccCHHHHHHHHHHHH
Confidence 3333221 13689999999999999999998754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=155.78 Aligned_cols=147 Identities=18% Similarity=0.189 Sum_probs=108.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHH------hHHhhh--cc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARR------VWKDYY--AK 87 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~ 87 (193)
+.++|+++|++|||||||+|++.+..+. ...+ |.......+.+.+..+.+|||||+..+.. ....++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 4679999999999999999999988763 2233 44445566778888999999999776543 344444 67
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY----AASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
+|++++|+|+++.+ ....++..+... ...|+++|+||+|+.. .....++.+.++.
T Consensus 82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~--------------- 140 (271)
T 3k53_A 82 ADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGV--------------- 140 (271)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSS---------------
T ss_pred CcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcCC---------------
Confidence 99999999998863 334444444433 2399999999999751 2234445555542
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+++++||++|.|+++++++|.+.
T Consensus 141 -----~~~~~Sa~~g~gi~~l~~~i~~~ 163 (271)
T 3k53_A 141 -----PVIPTNAKKGEGVEELKRMIALM 163 (271)
T ss_dssp -----CEEECBGGGTBTHHHHHHHHHHH
T ss_pred -----cEEEEEeCCCCCHHHHHHHHHHH
Confidence 56899999999999999999764
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.1e-25 Score=161.12 Aligned_cols=162 Identities=17% Similarity=0.140 Sum_probs=106.0
Q ss_pred CCCCcccEEEEEcCC---------CCCHHHHHHHHhcC---Ccc-ccCCCC-Ccc--ee----------------EEEeC
Q 029453 15 GLWQKEAKILFLGLD---------NSGKTTLLHMLKDE---RLV-QHQPTQ-YPT--SE----------------ELSIG 62 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~---------~~GKssl~~~l~~~---~~~-~~~~t~-~~~--~~----------------~~~~~ 62 (193)
+...+.+||+++|.+ |||||||++++.+. .+. ...+|. +.. .. .+...
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 345678999999999 99999999999984 443 222221 110 00 02234
Q ss_pred CeEEEEEE-----------------------cCChhhhHHhHHhhhc---------------------cCCEEEEEEeCC
Q 029453 63 KIKFKAFD-----------------------LGGHQMARRVWKDYYA---------------------KVDAVVYLIDAY 98 (193)
Q Consensus 63 ~~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~ii~v~d~~ 98 (193)
...+.+|| ++|++++...+..++. ++|++++|+|++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 56789999 4444444444444444 699999999999
Q ss_pred Ch--hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 99 DK--ERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 99 ~~--~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
++ +++..+..|+..+.......+.|+++|+||+|+......++....... . ..+.++++||+
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-~---------------~~~~~~e~SAk 237 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS-K---------------KNLQVVETSAR 237 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT-S---------------SSCCEEECBTT
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh-c---------------CCCeEEEEECC
Confidence 98 899998888888764322357999999999999532112222111110 0 12478999999
Q ss_pred cCCChhHHHHhhhhhc
Q 029453 177 RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 177 ~~~gi~~~~~~i~~~l 192 (193)
+|.|++++|++|.+.+
T Consensus 238 ~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 238 SNVNVDLAFSTLVQLI 253 (255)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998765
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.7e-24 Score=167.54 Aligned_cols=149 Identities=23% Similarity=0.312 Sum_probs=111.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChh-hhH--------HhHHhhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQ-MAR--------RVWKDYY 85 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~~~~ 85 (193)
..++|+++|.+|||||||+|++.+.... ...+ |.......+.+++..+.+|||||+. +.. .....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 4489999999999999999999987642 3333 5566778888899999999999987 432 2234567
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
+.+|++++|+|++++.++... ..+ ..+ .++|+++|+||+|+......+++....+.
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~~----------------- 377 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLGT----------------- 377 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHTC-----------------
T ss_pred hcccEEEEEecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhcC-----------------
Confidence 899999999999987665443 223 222 37899999999999765444444433221
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|+++++++|.+.+
T Consensus 378 -~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 378 -DRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp -STTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred -CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 13579999999999999999998753
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=158.13 Aligned_cols=159 Identities=18% Similarity=0.244 Sum_probs=109.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEeCCeEEEEEEcCChhhhHH---hHHhhhccCCEEEEE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ----HQPTQYPTSEELSIGKIKFKAFDLGGHQMARR---VWKDYYAKVDAVVYL 94 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~ii~v 94 (193)
||+++|.+||||||+++++.++.... ..+|.+.....+. ....+.+|||+||+++.. ....++++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999988665443 3456666655542 347899999999999864 357889999999999
Q ss_pred EeCCCh--hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 95 IDAYDK--ERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE----DELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 95 ~d~~~~--~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+|++++ +.......++..+... .++.|+++++||+|+...... .++..+......+... ....+
T Consensus 80 ~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~--------~~~~i 149 (331)
T 3r7w_B 80 IDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGL--------DGVQV 149 (331)
T ss_dssp CCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSC--------SCCCE
T ss_pred EECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcc--------cccCc
Confidence 999987 2233333333333221 257999999999999753322 2222222222211000 00247
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++||++ .++.++|..|.+.+
T Consensus 150 ~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 150 SFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp EEECCCSSS-SHHHHHHHHHHTTS
T ss_pred eEEEeccCC-CcHHHHHHHHHHHH
Confidence 899999998 59999999988754
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-24 Score=162.62 Aligned_cols=154 Identities=21% Similarity=0.274 Sum_probs=113.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-cc--CCCCCcceeEEEeCC-eEEEEEEcCChhhh-------HHhHHhhhccCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QH--QPTQYPTSEELSIGK-IKFKAFDLGGHQMA-------RRVWKDYYAKVD 89 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~~d 89 (193)
.+|+++|.+|||||||++++.+.... .. ..|..++...+.+.+ ..+.+|||||+.+. ...+...++.++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 37999999999999999999877643 22 236667777788775 88999999997541 122233456699
Q ss_pred EEEEEEeCCC---hhhHHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCC-CHHHHHHhhCCCccccCCCcccCCCCC
Q 029453 90 AVVYLIDAYD---KERFSESKRELDALLSDE-ALADVPFLILGNKIDIPYAA-SEDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 90 ~ii~v~d~~~---~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
++++|+|+++ ++++.....++..+.... ...++|+++|+||+|+.... ..+++.+.+...
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~--------------- 303 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDD--------------- 303 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSC---------------
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcC---------------
Confidence 9999999988 677888877777776532 13579999999999996421 112233333211
Q ss_pred CccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++++||+++.|+++++++|.+.+
T Consensus 304 ---~~v~~iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 304 ---YPVFPISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp ---CCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred ---CCEEEEECCCCcCHHHHHHHHHHHH
Confidence 3678999999999999999998765
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=165.25 Aligned_cols=150 Identities=23% Similarity=0.218 Sum_probs=96.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHHhH--------Hhh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARRVW--------KDY 84 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~ 84 (193)
....++|+++|.+|||||||+|++.+.... ...+ |.......+.+++..+.+|||||+..+.... ..+
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 346789999999999999999999987633 2222 4455667788899999999999987655333 235
Q ss_pred hccCCEEEEEEeCCChhhHHH---HHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH--HHHhhCCCccccCCCccc
Q 029453 85 YAKVDAVVYLIDAYDKERFSE---SKRELDALLSDEALADVPFLILGNKIDIPYAASEDE--LRYHMGLTNFTTGKGNVN 159 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~ 159 (193)
+..+|++++|+|++++.++.. ...++..+ .+.|+++|+||+|+.+....+. +... .
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~~~~~l~~~----~--------- 370 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADALIRAIADG----T--------- 370 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHHHHHHHHHH----H---------
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccchhHHHHHhc----C---------
Confidence 788999999999998766542 23333322 2799999999999975433321 1111 0
Q ss_pred CCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 160 LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 160 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|+++++++|.+.+
T Consensus 371 -------~~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 371 -------GTEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp -------TSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred -------CCceEEEEECCCCCHHHHHHHHHHHH
Confidence 13689999999999999999998754
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-23 Score=144.86 Aligned_cols=157 Identities=19% Similarity=0.264 Sum_probs=116.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCc--ceeEEEeCCe--EEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYP--TSEELSIGKI--KFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~~--~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...++|+++|++|||||||++++.+..+. .+.+|.+. ....+.+++. .+.+||++|++++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 45689999999999999999999988765 34445443 3456666664 4567999999888777778888899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|.++..++.....|+..+... ...+.|+++++||+|+.. .....+....... ..+.+
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-----------------~~~~~ 168 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-----------------NGLSF 168 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCEE
Confidence 999999988887777776655332 224789999999999863 2233322221111 12467
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+.+||+++.|+++++++|.+.+
T Consensus 169 ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 169 IETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998765
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=166.26 Aligned_cols=156 Identities=14% Similarity=0.115 Sum_probs=110.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCCh----------hhhHHhHH-h
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGH----------QMARRVWK-D 83 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~-~ 83 (193)
..++|+++|.+|||||||+|++.+.... ...+ |.......+..++..+.+|||||+ +.+..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 5689999999999999999999988754 2222 444555677888889999999998 44444332 4
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHHhhCCCccccCCCcccCC
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS--EDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
+++.+|++++|+|++++.+.+.. .++..+.. .++|+++|+||+|+..... .+++.+.+.....
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~---------- 318 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ---------- 318 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCG----------
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcc----------
Confidence 67889999999999998766554 34444432 4799999999999975433 2333332221110
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.....+++++||++|.|++++++.+.+.
T Consensus 319 --~~~~~~~~~~SA~tg~~v~~l~~~i~~~ 346 (436)
T 2hjg_A 319 --FLDYAPILFMSALTKKRIHTLMPAIIKA 346 (436)
T ss_dssp --GGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred --cCCCCCEEEEecccCCCHHHHHHHHHHH
Confidence 0023578999999999999999998764
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=166.24 Aligned_cols=149 Identities=19% Similarity=0.223 Sum_probs=102.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhh---------hHHhHHhhhcc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQM---------ARRVWKDYYAK 87 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 87 (193)
.+|+++|.+|||||||+|++.+.... ...+ |.+.....+.+++..+.+|||||++. +......+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 48999999999999999999988743 2222 55666778888999999999999653 34556678899
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHH-HHhhCCCccccCCCcccCCCCCCc
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDEL-RYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+|++++|+|+.++.+. ...++..+++. .++|+++|+||+|+.... ..+. .+.... .
T Consensus 82 ad~il~V~D~~~~~~~--~d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~l-----------------g 138 (439)
T 1mky_A 82 ADLVLFVVDGKRGITK--EDESLADFLRK---STVDTILVANKAENLREF-EREVKPELYSL-----------------G 138 (439)
T ss_dssp CSEEEEEEETTTCCCH--HHHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGGG-----------------S
T ss_pred CCEEEEEEECCCCCCH--HHHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHhc-----------------C
Confidence 9999999999875332 22333344332 378999999999985210 1111 111111 1
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|+++++++|.+.+
T Consensus 139 ~~~~~~iSA~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 139 FGEPIPVSAEHNINLDTMLETIIKKL 164 (439)
T ss_dssp SCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEeccCCCCHHHHHHHHHHhc
Confidence 11468999999999999999997653
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=163.66 Aligned_cols=165 Identities=17% Similarity=0.143 Sum_probs=110.7
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CC--------------Cc-----ceeEEEeCCeEEEEEEc
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQ--------------YP-----TSEELSIGKIKFKAFDL 71 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~--------------~~-----~~~~~~~~~~~~~~~D~ 71 (193)
+..++.++|+++|++|+|||||+++|.+........ +. .. ...........+.+|||
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 346688999999999999999999998743221100 00 00 00000112268999999
Q ss_pred CChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCcc
Q 029453 72 GGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNF 151 (193)
Q Consensus 72 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~ 151 (193)
|||+.+...+..++..+|++++|+|++++.++.....++..+... ...|+++|+||+|+.......+..+.+....
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l- 158 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFT- 158 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHH-
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999875444444444433222 2358999999999974322222222211100
Q ss_pred ccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 152 TTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
. .......+++++||++|.|+++++++|.+.+
T Consensus 159 ~---------~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 159 K---------GTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp T---------TSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred H---------hhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 0 0011346899999999999999999998754
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.1e-24 Score=166.73 Aligned_cols=149 Identities=16% Similarity=0.255 Sum_probs=100.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChh--------hhHHhHHhhhcc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQ--------MARRVWKDYYAK 87 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~ 87 (193)
.++|+++|.+|||||||+|++.+.......+ |.+.......+.+..+.+|||||++ .+......+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 4699999999999999999999876543322 3344445556677889999999985 566666778899
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|++++|+|+.++.+. ...++..+++. .++|+++|+||+|+..... +. ..++. ...
T Consensus 83 ad~il~vvD~~~~~~~--~d~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~~-----~~~~~------------lg~ 138 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTA--ADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NI-----YDFYS------------LGF 138 (436)
T ss_dssp CSEEEEEEETTTCSCH--HHHHHHHHHTT---CCSCEEEEEECCCC-------CC-----CSSGG------------GSS
T ss_pred CCEEEEEEeCCCCCCH--HHHHHHHHHHH---cCCCEEEEEECccCccchh--hH-----HHHHH------------cCC
Confidence 9999999999886443 33455555543 5789999999999864211 00 01100 011
Q ss_pred EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++++||++|.|+++++++|.+.+
T Consensus 139 ~~~~~iSA~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 139 GEPYPISGTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp CCCEECBTTTTBTHHHHHHHHHHTG
T ss_pred CCeEEEeCcCCCChHHHHHHHHHhc
Confidence 2579999999999999999997754
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-23 Score=154.86 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=106.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc--CC--CCCcceeEEEeCCeEEEEEEcCChh-hhHHh--------HHhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH--QP--TQYPTSEELSIGKIKFKAFDLGGHQ-MARRV--------WKDY 84 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~D~~g~~-~~~~~--------~~~~ 84 (193)
.+..+|+++|++|||||||+|++.+...... .+ |.......+..++..+.+|||||+. ..... ...+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 3566899999999999999999998875422 22 3334445566778899999999986 33221 2344
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
++.+|++++|+|+++ +.....++...+.. .+.|+++++||+|+... ....+....+....
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~------------- 146 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQM------------- 146 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTS-------------
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHhc-------------
Confidence 678999999999976 23333444444433 47899999999998641 11112222221111
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....++++||++|.|+++++++|.+.+
T Consensus 147 --~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 147 --NFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp --CCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred --CcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 113689999999999999999998653
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=155.97 Aligned_cols=156 Identities=17% Similarity=0.221 Sum_probs=112.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-c--CCCCCcceeEEEeCCeEEEEEEcCChhhh---------HHhHHhhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-H--QPTQYPTSEELSIGKIKFKAFDLGGHQMA---------RRVWKDYY 85 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~ 85 (193)
...++|+++|++|||||||++++.+..... . ..|.......+...+..+.+|||||+... ........
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 567899999999999999999999877432 1 22555556666677889999999997432 12222344
Q ss_pred ccCCEEEEEEeCCChh--hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 86 AKVDAVVYLIDAYDKE--RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
..+|++++|+|++++. ++.....++..+.... .+.|+++|+||+|+......++.......
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~~~--------------- 307 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFVKE--------------- 307 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHHHH---------------
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHHHh---------------
Confidence 5699999999998876 5666677777765432 27999999999999643222222222110
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|+|+++++++|.+.+
T Consensus 308 --~~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 308 --KGLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp --TTCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred --cCCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 124679999999999999999998754
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-23 Score=164.53 Aligned_cols=158 Identities=14% Similarity=0.159 Sum_probs=111.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCC----------hhhhHHhHH-
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGG----------HQMARRVWK- 82 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~- 82 (193)
...++|+++|.+|+|||||++++.+.... ...+ |.......+..++..+.+||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 46789999999999999999999977632 2222 44555667888889999999999 566655443
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccC
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
.+++.+|++++|+|++++.. ....++...+.. .++|+++|+||+|+.... ..+++.+...... .
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~-------- 338 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF-Q-------- 338 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHC-G--------
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhc-c--------
Confidence 46789999999999988532 333333333333 479999999999997432 2333333332211 0
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....+++++||++|.|++++|++|.+.+
T Consensus 339 ---~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 339 ---FLDYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp ---GGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred ---cCCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 01235799999999999999999987653
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-23 Score=147.72 Aligned_cols=122 Identities=25% Similarity=0.338 Sum_probs=93.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhcc----CCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAK----VDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~d~ii 92 (193)
..+.++|+++|++|||||||++++.+..+....++..++. ...+....+.+|||||++.+...+..++.. +|+++
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 87 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 87 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEE-ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceE-EEEeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEE
Confidence 4578999999999999999999999887653222222211 111255688999999999988877777776 89999
Q ss_pred EEEeCC-ChhhHHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCCCCCCH
Q 029453 93 YLIDAY-DKERFSESKRELDALLSDE---ALADVPFLILGNKIDIPYAASE 139 (193)
Q Consensus 93 ~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~Dl~~~~~~ 139 (193)
+|+|++ +++++.....++..++... ...+.|+++|+||+|+......
T Consensus 88 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 138 (218)
T 1nrj_B 88 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 138 (218)
T ss_dssp EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred EEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence 999999 7788888888888776532 2257999999999999865553
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.2e-23 Score=162.75 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=109.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCC----cc---c-c--CCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDER----LV---Q-H--QPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYA 86 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~----~~---~-~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 86 (193)
..+.++|+++|++++|||||+++|.+.. .. . . ..|.......+.+++..+.+||||||+.+...+..++.
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHh
Confidence 4568999999999999999999998766 21 1 1 12444455567778899999999999999888888999
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
.+|++++|+|++++..-+.. ..+. ++.. .++|+++++||+|+......++..+++.... .... ...
T Consensus 96 ~aD~~ilVvda~~g~~~qt~-e~l~-~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l-~~~~--------~~~ 161 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTG-EHML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSIL-QSTH--------NLK 161 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHH-HHHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHH-HHSS--------SGG
T ss_pred hCCEEEEEEecCCCccHHHH-HHHH-HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHH-hhhc--------ccc
Confidence 99999999999874211111 1111 2222 3688899999999974222222222221110 0000 012
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|+++++++|.+.+
T Consensus 162 ~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 162 NSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp GCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHHhh
Confidence 46899999999999999999998753
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-23 Score=162.22 Aligned_cols=149 Identities=18% Similarity=0.224 Sum_probs=99.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHHhHH--------hhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARRVWK--------DYY 85 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~--------~~~ 85 (193)
...++|+++|++|||||||+|++.+.... ...+ |.......+..++..+.+|||||+........ .++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 35689999999999999999999876543 2222 33344567788899999999999865433222 356
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
..+|++++|+|++++.+... ..++..+ ...|+++|+||+|+.+..... .... ..
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~------~~~~-------------~~ 355 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT------SLEY-------------PE 355 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST------TCCC-------------CT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH------HHHH-------------hc
Confidence 78999999999998754433 3344443 247999999999996432211 0000 01
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 356 ~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 356 NITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 235789999999999999999998764
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-23 Score=161.53 Aligned_cols=151 Identities=19% Similarity=0.269 Sum_probs=106.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCcceeEEEeCCe-EEEEEEcCChhhhHHh-------HHhhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH----QPTQYPTSEELSIGKI-KFKAFDLGGHQMARRV-------WKDYY 85 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~-------~~~~~ 85 (193)
...++|+++|.+|+|||||++++.+..+... ..|.......+.+.+. .+.+|||||+..+... ...++
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l 111 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF 111 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence 3578999999999999999999998876421 2255566667777664 8999999998765322 45577
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 86 AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
..+|++++|+|++.. .....++..+.. .++|+++|+||+|+...... +..+.+....
T Consensus 112 ~~aD~vllVvD~~~~---~~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~--------------- 168 (423)
T 3qq5_A 112 YRADCGILVTDSAPT---PYEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAE-ELKGLYESRY--------------- 168 (423)
T ss_dssp TSCSEEEEECSSSCC---HHHHHHHHHHHH----TTCCEEEECCCCTTTTCCCT-HHHHHSSCCT---------------
T ss_pred hcCCEEEEEEeCCCh---HHHHHHHHHHHh----cCCCEEEEEeCcCCCCccHH-HHHHHHHHHc---------------
Confidence 889999999999433 233444444433 27999999999999855443 3333332221
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++++++||++|.|+++++++|.+.+
T Consensus 169 -g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 169 -EAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp -TCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred -CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 24789999999999999999998865
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-21 Score=151.03 Aligned_cols=158 Identities=18% Similarity=0.133 Sum_probs=99.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc----cCC--CCCcceeEEEe---------------C--------CeEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ----HQP--TQYPTSEELSI---------------G--------KIKFKA 68 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~----~~~--t~~~~~~~~~~---------------~--------~~~~~~ 68 (193)
+..++|+++|++++|||||+++|.+..... ..+ |.......... + ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 467899999999999999999998543221 112 33222221111 1 268999
Q ss_pred EEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHH
Q 029453 69 FDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS----EDELRY 144 (193)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~----~~~~~~ 144 (193)
||||||+.+...+......+|++++|+|++++.........+..+... ...|+++++||+|+..... .+++.+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999999888888888899999999998642111111122222111 2358999999999975332 223333
Q ss_pred hhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 145 HMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+.... ....+++++||++|.|+++++++|.+.+
T Consensus 163 ~l~~~~--------------~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 163 FVKGTI--------------AENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHTTST--------------TTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHhhcC--------------CCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 332211 1346899999999999999999998754
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.1e-24 Score=170.07 Aligned_cols=157 Identities=19% Similarity=0.151 Sum_probs=110.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCC--CCCcceeEEEe-CCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQP--TQYPTSEELSI-GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.+.++|+++|++|+|||||+++|.+..+.. ..+ |.......+.. .+..+.+||||||+.|...+..++..+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 367899999999999999999998766542 222 33333334444 45678999999999999888888899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
|+|++++...+... .+..+. . .++|+++++||+|+..... ..++. .+.... ..+....++
T Consensus 82 VVDa~dg~~~qt~e-~l~~~~-~---~~vPiIVViNKiDl~~~~~~~v~~~l~-~~~~~~-----------e~~~~~~~i 144 (537)
T 3izy_P 82 VVAADDGVMKQTVE-SIQHAK-D---AHVPIVLAINKCDKAEADPEKVKKELL-AYDVVC-----------EDYGGDVQA 144 (537)
T ss_dssp ECBSSSCCCHHHHH-HHHHHH-T---TTCCEEECCBSGGGTTTSCCSSSSHHH-HTTSCC-----------CCSSSSEEE
T ss_pred EEECCCCccHHHHH-HHHHHH-H---cCCcEEEEEecccccccchHHHHHHHH-hhhhhH-----------HhcCCCceE
Confidence 99999865433333 222232 2 4789999999999973221 11222 111111 112245789
Q ss_pred EEEeeecCCChhHHHHhhhhh
Q 029453 171 FMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+++||++|.|+++++++|...
T Consensus 145 v~vSAktG~GI~eLle~I~~l 165 (537)
T 3izy_P 145 VHVSALTGENMMALAEATIAL 165 (537)
T ss_dssp CCCCSSSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCCchhHHHHHHHh
Confidence 999999999999999998764
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=161.28 Aligned_cols=152 Identities=16% Similarity=0.239 Sum_probs=104.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCC--------hhhhHHhHHhh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGG--------HQMARRVWKDY 84 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~~ 84 (193)
.++.++|+++|.+|||||||+|++.+........ |.........+.+..+.+||||| ++.+......+
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 3457899999999999999999999877653322 33344445556678999999999 77778888888
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+..+|++++|+|..++ +.....++..++.. .++|+++|+||+|+.... .+..+.+..
T Consensus 100 ~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~l---------------- 156 (456)
T 4dcu_A 100 MDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYSL---------------- 156 (456)
T ss_dssp HHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGG----------------
T ss_pred HhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHHc----------------
Confidence 9999999999998775 34445566666654 589999999999986321 111111111
Q ss_pred CccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....+++||++|.|+.++++++.+.+
T Consensus 157 -g~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 157 -GFGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp -SSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred -CCCceEEeecccccchHHHHHHHHhhc
Confidence 112357999999999999999987654
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.6e-22 Score=146.16 Aligned_cols=158 Identities=11% Similarity=0.034 Sum_probs=103.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc--cC---CCCCcceeEEEeCCeEEEEEEcCChhhh-----------HHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ--HQ---PTQYPTSEELSIGKIKFKAFDLGGHQMA-----------RRV 80 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~--~~---~t~~~~~~~~~~~~~~~~~~D~~g~~~~-----------~~~ 80 (193)
..+.++|+++|++|||||||++++.+..... .. .|.........+.+..+.+|||||+..+ ...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 4467899999999999999999999877332 22 2444555677788899999999997643 222
Q ss_pred HHhhhccCCEEEEEEeCCChhhH-HHHHHHHHHHHhCCCCCCCcEEEEee-CCCCCCCCCHHH------------HHHhh
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERF-SESKRELDALLSDEALADVPFLILGN-KIDIPYAASEDE------------LRYHM 146 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~n-K~Dl~~~~~~~~------------~~~~~ 146 (193)
...++..+|++++|+|+++.... .....++..++.. ....|+++++| |+|+... ...+ +...+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 23456789999999999863221 2233444444321 11457777776 9999743 3333 22222
Q ss_pred CCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 147 GLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+... ..+..+++||+++.|++++|++|.+.+
T Consensus 176 ~~~~---------------~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 176 GGRI---------------CAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp TTCE---------------EECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeE---------------EEecCcccccccHHHHHHHHHHHHHHH
Confidence 2111 001117899999999999999997754
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-21 Score=155.12 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=92.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC------------------Cccc-------cCCCCCcceeEEEeCCeEEEEEEcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE------------------RLVQ-------HQPTQYPTSEELSIGKIKFKAFDLGG 73 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~------------------~~~~-------~~~t~~~~~~~~~~~~~~~~~~D~~g 73 (193)
+..+|+|+|++|||||||+++|... .... ...|.......+.+.+..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 5679999999999999999999611 1111 12255566677888999999999999
Q ss_pred hhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCC
Q 029453 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGL 148 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~ 148 (193)
+.++......++..+|++++|+|++++...+... .+..+. . .++|+++|+||+|+..... .+++.+.++.
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~-~---~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~ 164 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCR-L---RHTPIMTFINKMDRDTRPSIELLDEIESILRI 164 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHH-T---TTCCEEEEEECTTSCCSCHHHHHHHHHHHHCC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH-H---cCCCEEEEEeCCCCccccHHHHHHHHHHhhCC
Confidence 9999888889999999999999999865444433 333332 2 4789999999999964432 2335555543
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=148.48 Aligned_cols=153 Identities=20% Similarity=0.140 Sum_probs=104.7
Q ss_pred ccE-EEEEcCCCCCHHHHHHHHhcCCccc---cCCCCCcceeEEEeCCeEEEEEEcCCh---------hhhHHhHHhhhc
Q 029453 20 EAK-ILFLGLDNSGKTTLLHMLKDERLVQ---HQPTQYPTSEELSIGKIKFKAFDLGGH---------QMARRVWKDYYA 86 (193)
Q Consensus 20 ~~~-i~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~---------~~~~~~~~~~~~ 86 (193)
.++ |+++|++|||||||+|++.+..... ..+|.++....+.+++..+.+|||+|. +.+...+ ..+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHHH
Confidence 455 9999999999999999999877531 234666777888898899999999996 2333333 3568
Q ss_pred cCCEEEEEEeCCChh--hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH---HH----HhhCCCccccCCCc
Q 029453 87 KVDAVVYLIDAYDKE--RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE---LR----YHMGLTNFTTGKGN 157 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~---~~----~~~~~~~~~~~~~~ 157 (193)
.+|++++|+|++++. .......+ ..++......+.|+++|+||+|+.... ..+ .. ..+..
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~-~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~--------- 325 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSS-FEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYS--------- 325 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHH-HHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCS---------
T ss_pred hCCEEEEEEECCCCcchHHHHHHHH-HHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcC---------
Confidence 899999999998875 33333222 233333233578999999999997543 222 11 11100
Q ss_pred ccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 158 VNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||+++.|+++++++|.+.+
T Consensus 326 --------~~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 326 --------PIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp --------CEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------CCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 124679999999999999999997754
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-22 Score=142.71 Aligned_cols=130 Identities=23% Similarity=0.330 Sum_probs=94.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhcc----CCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAK----VDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~d~ii 92 (193)
..+.++|+++|++|||||||++++.+..+.....+..+.. ...+....+.+|||||++.+...+..++.. +|+++
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 123 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 123 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-eeeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEE
Confidence 3577899999999999999999999887543221111111 112256778999999998876666666654 89999
Q ss_pred EEEeCC-ChhhHHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCCCCCCHHHHHHhhC
Q 029453 93 YLIDAY-DKERFSESKRELDALLSDE---ALADVPFLILGNKIDIPYAASEDELRYHMG 147 (193)
Q Consensus 93 ~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~ 147 (193)
+|+|++ +.+++.....++..++... ...+.|+++|+||+|+......+++...+.
T Consensus 124 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 124 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp EEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred EEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 999999 8888888888887776432 225799999999999987767666555543
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-22 Score=152.20 Aligned_cols=134 Identities=17% Similarity=0.297 Sum_probs=99.8
Q ss_pred CcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhCCCCCCC
Q 029453 53 YPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD----------KERFSESKRELDALLSDEALADV 122 (193)
Q Consensus 53 ~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 122 (193)
+.....+.+++..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+.+.....+.
T Consensus 182 Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~ 261 (353)
T 1cip_A 182 GIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDT 261 (353)
T ss_dssp SEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred ceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCC
Confidence 44445667788999999999999999999999999999999999998 56799999999999875555689
Q ss_pred cEEEEeeCCCCCC-----------------CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHH
Q 029453 123 PFLILGNKIDIPY-----------------AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGF 185 (193)
Q Consensus 123 pviiv~nK~Dl~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 185 (193)
|+++++||+|+.. ..+.++........+..-.. ......+.+++|||+++.|++++|
T Consensus 262 piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~------~~~~~~~~~~etSA~~~~nV~~vF 335 (353)
T 1cip_A 262 SIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNK------RKDTKEIYTHFTCATDTKNVQFVF 335 (353)
T ss_dssp EEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCS------CTTTCCEEEEECCTTCHHHHHHHH
T ss_pred cEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhc------ccCCCceEEEEEECcCchhHHHHH
Confidence 9999999999851 12333333222211100000 000145789999999999999999
Q ss_pred Hhhhhhc
Q 029453 186 KWLSQYI 192 (193)
Q Consensus 186 ~~i~~~l 192 (193)
+++.+.+
T Consensus 336 ~~v~~~i 342 (353)
T 1cip_A 336 DAVTDVI 342 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-21 Score=151.34 Aligned_cols=159 Identities=19% Similarity=0.152 Sum_probs=105.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc----cCC--CCCcceeEEEe------------------C-----CeEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ----HQP--TQYPTSEELSI------------------G-----KIKFK 67 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~----~~~--t~~~~~~~~~~------------------~-----~~~~~ 67 (193)
.+..++|+++|++++|||||+++|.+..... ..+ |.........+ + ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567899999999999999999998543221 112 33332222222 0 26899
Q ss_pred EEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHH
Q 029453 68 AFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE----DELR 143 (193)
Q Consensus 68 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~----~~~~ 143 (193)
+||||||+.+...+......+|++++|+|++++.........+..+... ...|+++++||+|+...... +++.
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 9999999999888888888999999999998642111111111111111 23689999999999743211 1233
Q ss_pred HhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 144 YHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+.+... .....+++++||++|.|+++++++|.+.+
T Consensus 164 ~~l~~~--------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 164 EFIEGT--------------VAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHTTS--------------TTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHhc--------------CcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 222211 11346899999999999999999998754
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=158.45 Aligned_cols=152 Identities=20% Similarity=0.210 Sum_probs=104.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--ccc---------c---CC----CCCcceeEEEeC-----CeEEEEEEcCChh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER--LVQ---------H---QP----TQYPTSEELSIG-----KIKFKAFDLGGHQ 75 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~--~~~---------~---~~----t~~~~~~~~~~~-----~~~~~~~D~~g~~ 75 (193)
+-.+|+++|++++|||||++++.... ... . +. |.......+.+. +..+.+||||||.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 34689999999999999999997522 110 0 01 222223344443 3789999999999
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccc
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFT 152 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 152 (193)
+|...+...+..+|++++|+|++++...+....|..... .++|+++++||+|+...... +++.+.++...
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~-- 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA-- 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC--
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc--
Confidence 999988899999999999999998765666555554442 47899999999999754322 22333333221
Q ss_pred cCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 153 TGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++++||++|.|+++++++|.+.+
T Consensus 156 ---------------~~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 156 ---------------TDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp ---------------TTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred ---------------ceEEEeecccCCCchhHHHHHhhcC
Confidence 2479999999999999999998764
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=157.18 Aligned_cols=155 Identities=20% Similarity=0.200 Sum_probs=107.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC--ccc---------c---C----CCCCcceeEEEeC-----CeEEEEEEcCChh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER--LVQ---------H---Q----PTQYPTSEELSIG-----KIKFKAFDLGGHQ 75 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~--~~~---------~---~----~t~~~~~~~~~~~-----~~~~~~~D~~g~~ 75 (193)
+-.+|+++|++++|||||++++.... ... . + .|.......+.+. ...+.+||||||.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 45699999999999999999996521 110 0 0 1222223344442 3688999999999
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCC
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGK 155 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 155 (193)
+|.......+..+|++++|+|++++...+....|..... .++|+++++||+|+.... .++..+.+.... .
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~-~~~v~~el~~~l---g- 154 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL---G- 154 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS---C-
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC-HHHHHHHHHHhh---C-
Confidence 999888888999999999999999866666655555442 478999999999997543 333222222111 0
Q ss_pred CcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 156 GNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
....+++++||++|.|+++++++|.+.+
T Consensus 155 ---------~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 155 ---------LDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp ---------CCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred ---------CCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 0112479999999999999999998764
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-23 Score=163.72 Aligned_cols=159 Identities=19% Similarity=0.180 Sum_probs=107.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
.+.++|+++|++++|||||++++.+....... .|.......+.+++..+.+||||||+.|...+...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 46789999999999999999999865443221 133333334455667899999999999988887888899999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+|++++...+... .+..+. . .+.|+++++||+|+..... +++...+.... ..+..+....+++++|
T Consensus 82 Vda~~g~~~qT~e-~l~~~~-~---~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~--------~~~~~~~~~~~~v~vS 147 (501)
T 1zo1_I 82 VAADDGVMPQTIE-AIQHAK-A---AQVPVVVAVNKIDKPEADP-DRVKNELSQYG--------ILPEEWGGESQFVHVS 147 (501)
T ss_dssp EETTTBSCTTTHH-HHHHHH-H---TTCCEEEEEECSSSSTTCC-CCTTCCCCCCC--------CCTTCCSSSCEEEECC
T ss_pred eecccCccHHHHH-HHHHHH-h---cCceEEEEEEeccccccCH-HHHHHHHHHhh--------hhHHHhCCCccEEEEe
Confidence 9998742111111 122221 1 4789999999999964221 11111111100 0111122347899999
Q ss_pred eecCCChhHHHHhhhh
Q 029453 175 IVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~ 190 (193)
|++|.|+++++++|..
T Consensus 148 AktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 148 AKAGTGIDELLDAILL 163 (501)
T ss_dssp TTTCTTCTTHHHHTTT
T ss_pred eeeccCcchhhhhhhh
Confidence 9999999999999865
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=9.9e-22 Score=155.22 Aligned_cols=156 Identities=20% Similarity=0.230 Sum_probs=104.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--CCCcceeEEEeCCeEEEEEEcCChhhhHHh------------HH
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMARRV------------WK 82 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------------~~ 82 (193)
..++|+++|++|||||||+|++.+.... ...+ |..+....+.+++..+.+|||||..+.... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 4589999999999999999999988653 2222 445566778888999999999997543221 12
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCCcccC
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
.++..+|++++|+|++++.+.+. ..+...+.. .++|+++|+||+|+.... ..+++...+.....
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--------- 324 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLY--------- 324 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCG---------
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhc---------
Confidence 35678999999999987654433 223333332 479999999999997432 23333322211110
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.....+++++||++|.|++++++.|.+.
T Consensus 325 ---~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 352 (439)
T 1mky_A 325 ---FIDYSPLIFTSADKGWNIDRMIDAMNLA 352 (439)
T ss_dssp ---GGTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred ---cCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 0123578999999999999999998764
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-22 Score=157.06 Aligned_cols=158 Identities=17% Similarity=0.050 Sum_probs=103.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc------------------------------c----cCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV------------------------------Q----HQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~------------------------------~----~~~t~~~~~~~~~~~ 62 (193)
.+..+||+++|.+|+|||||+++|.+.... . ...|.......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 567899999999999999999999754110 0 011444455667778
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHH-----HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFS-----ESKRELDALLSDEALADVPFLILGNKIDIPYAA 137 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~ 137 (193)
+..+.+|||||++++...+..++..+|++++|+|++++.... ........+.... ...|+++|+||+|+....
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence 899999999999999999999999999999999999864322 1222232332221 235799999999997421
Q ss_pred --CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHH
Q 029453 138 --SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184 (193)
Q Consensus 138 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 184 (193)
..++....+....-.... ....++++++||++|.|++++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~--------~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGF--------FEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTC--------CGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHcCC--------CcccceEEEEeeecCCCcccc
Confidence 112222222111000000 013578999999999999864
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-21 Score=143.66 Aligned_cols=171 Identities=13% Similarity=0.096 Sum_probs=107.4
Q ss_pred cHHHHHHHHHHHhCC-----CCcccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcce-----------------
Q 029453 2 FLVDWFYGILVSLGL-----WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYPTS----------------- 56 (193)
Q Consensus 2 ~~~~~~~~~~~~~~~-----~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~~----------------- 56 (193)
.++..+..+...+.. ....++|+++|.+|||||||+|++.+..+.... .+..+..
T Consensus 3 ~~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~ 82 (299)
T 2aka_B 3 DLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCK 82 (299)
T ss_dssp THHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTST
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcC
Confidence 355555555444332 236679999999999999999999988764111 0111110
Q ss_pred ----------------------------------eEEEeC-CeEEEEEEcCChh-------------hhHHhHHhhhccC
Q 029453 57 ----------------------------------EELSIG-KIKFKAFDLGGHQ-------------MARRVWKDYYAKV 88 (193)
Q Consensus 57 ----------------------------------~~~~~~-~~~~~~~D~~g~~-------------~~~~~~~~~~~~~ 88 (193)
..+... ...+.+|||||.. .+......++..+
T Consensus 83 g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (299)
T 2aka_B 83 GKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKE 162 (299)
T ss_dssp TCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTST
T ss_pred CcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCC
Confidence 001111 3689999999953 3455667788888
Q ss_pred CEEE-EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHHhhCCCccccCCCcccCCCCCC
Q 029453 89 DAVV-YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS--EDELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 89 d~ii-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
+.++ +|+|+++.........++..+ .. .+.|+++|+||+|+..... .+.+...+ .. ...
T Consensus 163 ~~~il~v~d~~~~~~~~~~~~~~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~--~~------------~~~ 224 (299)
T 2aka_B 163 NCLILAVSPANSDLANSDALKIAKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLENKL--LP------------LRR 224 (299)
T ss_dssp TEEEEEEEESSSCGGGCHHHHHHHHH-CT---TCSSEEEEEECGGGSCTTCCCHHHHTTCS--SC------------CTT
T ss_pred CeEEEEEecCCcchhhhHHHHHHHHh-CC---CCCeEEEEEEccccCCCCchHHHHHhCCc--Cc------------CCC
Confidence 8776 799998753333322333333 22 4789999999999974322 22221110 00 001
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhh
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
...+++++||++|.|+++++++|.+
T Consensus 225 ~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 225 GYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp CEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred CcEEEECCChhhccccccHHHHHHH
Confidence 2357899999999999999999764
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.5e-21 Score=149.41 Aligned_cols=160 Identities=20% Similarity=0.183 Sum_probs=102.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc--c--------------------------------cCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV--Q--------------------------------HQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~--------------------------------~~~t~~~~~~~~~~~ 62 (193)
.+..++|+++|.+++|||||+++|.+..-. . ...|.......+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 346789999999999999999999543211 0 001223334456677
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhh---HH--HHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKER---FS--ESKRELDALLSDEALADVP-FLILGNKIDIPYA 136 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~~--~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~ 136 (193)
+..+.+||||||+++...+..++..+|++++|+|++++.. +. ........++.. .+.| +++++||+|+...
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCccc
Confidence 8899999999999999988899999999999999988631 11 111111122222 3566 9999999999632
Q ss_pred CC----HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHH
Q 029453 137 AS----EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFK 186 (193)
Q Consensus 137 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 186 (193)
.. .++...++....-..... ....++++++||++|.|++++.+
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~-------~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFN-------PKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhccc-------ccCCeeEEEeeccCCcccccccc
Confidence 11 112222221100000000 00246899999999999998544
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.7e-22 Score=161.25 Aligned_cols=158 Identities=17% Similarity=0.065 Sum_probs=105.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc----------------------------------cCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ----------------------------------HQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~ 62 (193)
.+..++|+++|++|+|||||+++|.+..... ...|.......+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 4568999999999999999999998663221 112445556677788
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhh---H--HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKER---F--SESKRELDALLSDEALADVPFLILGNKIDIPYAA 137 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~--~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~ 137 (193)
+..+.+||||||+++...+..++..+|++|+|+|++++.. + .........+.... ...|+++|+||+|+....
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTC
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEecccccchh
Confidence 8999999999999999888888999999999999987421 0 11222222222221 234599999999997521
Q ss_pred --CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHH
Q 029453 138 --SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184 (193)
Q Consensus 138 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 184 (193)
..++....+......... ....++++++||++|.|+.++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~--------~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGF--------FEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTC--------CGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcc--------cccCccEEeeecccCCCcccc
Confidence 112222222111000000 003468999999999999876
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-21 Score=149.84 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=107.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcC--------Cccc------------cCCCCCcceeEEEeCCeEEEEEEcCChh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDE--------RLVQ------------HQPTQYPTSEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (193)
..+..++|+++|++|+|||||+++|.+. .+.. ...|.......+...+..+.+||||||+
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 3457799999999999999999999863 1111 0113333344556667899999999999
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HH----HHHHhhCCC
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAAS-ED----ELRYHMGLT 149 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~-~~----~~~~~~~~~ 149 (193)
++...+..++..+|++++|+|++++... ....++..+. . .++| +++++||+|+..... .+ ++...+...
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~-~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLAR-Q---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY 161 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHH-H---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHH-H---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence 9988888889999999999999886432 2233333332 2 3677 899999999974211 11 111111111
Q ss_pred ccccCCCcccCCCCCCccEEEEEEeeecCCC------------------hhHHHHhhhhhc
Q 029453 150 NFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG------------------YGEGFKWLSQYI 192 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g------------------i~~~~~~i~~~l 192 (193)
.+ .....+++++||++|.| +.++++.|.+.+
T Consensus 162 ~~------------~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 162 EF------------PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp TS------------CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred cc------------cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 00 00235799999999987 788888887643
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=144.71 Aligned_cols=134 Identities=14% Similarity=0.223 Sum_probs=98.9
Q ss_pred CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhCCCCC
Q 029453 51 TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY----------DKERFSESKRELDALLSDEALA 120 (193)
Q Consensus 51 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~ 120 (193)
|.+.....+..++..+.+||++|++.++..|..++++++++|+|+|++ +..++.+...++..+.+.....
T Consensus 154 TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~ 233 (327)
T 3ohm_A 154 TTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 233 (327)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred eeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC
Confidence 334455667788899999999999999999999999999999999654 6778899999999998766567
Q ss_pred CCcEEEEeeCCCCCC------------------CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChh
Q 029453 121 DVPFLILGNKIDIPY------------------AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYG 182 (193)
Q Consensus 121 ~~pviiv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 182 (193)
+.|+++++||+|+.. ..+.++........+... .......+.++.+||+++.||+
T Consensus 234 ~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~-------~~~~~~~i~~~~TsA~d~~nV~ 306 (327)
T 3ohm_A 234 NSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDL-------NPDSDKIIYSHFTCATDTENIR 306 (327)
T ss_dssp TCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSS-------CTTTTSCEEEEECCTTCHHHHH
T ss_pred CceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhh-------cccccCCcEEEEEEeecCHHHH
Confidence 899999999999852 122222222211111000 0011145788999999999999
Q ss_pred HHHHhhhhh
Q 029453 183 EGFKWLSQY 191 (193)
Q Consensus 183 ~~~~~i~~~ 191 (193)
++|+.+.+.
T Consensus 307 ~vF~~v~~~ 315 (327)
T 3ohm_A 307 FVFAAVKDT 315 (327)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-21 Score=148.46 Aligned_cols=130 Identities=17% Similarity=0.357 Sum_probs=90.0
Q ss_pred eeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhCCCCCCCcEE
Q 029453 56 SEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD----------KERFSESKRELDALLSDEALADVPFL 125 (193)
Q Consensus 56 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~pvi 125 (193)
...+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...++..+.+.....+.|++
T Consensus 193 ~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piI 272 (362)
T 1zcb_A 193 EYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 272 (362)
T ss_dssp EEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred EEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEE
Confidence 34566778999999999999999999999999999999999998 77899999999999876445689999
Q ss_pred EEeeCCCCCC------------------CCCHHHHHHhhCCCccccCCCcccCCCCC-CccEEEEEEeeecCCChhHHHH
Q 029453 126 ILGNKIDIPY------------------AASEDELRYHMGLTNFTTGKGNVNLDNTN-VRPLEVFMCSIVRKMGYGEGFK 186 (193)
Q Consensus 126 iv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~ 186 (193)
+++||+|+.. ..+.++........+ .. +.... ...+.++++||+++.|++++|+
T Consensus 273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f-~~------l~~~~~~~~~~~~~tSA~d~~nV~~vF~ 345 (362)
T 1zcb_A 273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF-RG------KRRDQQQRPLYHHFTTAINTENIRLVFR 345 (362)
T ss_dssp EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHH-HT------TCSSCC--CCEEEECCTTCHHHHHHHHH
T ss_pred EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHH-HH------hhcccCCCceEEEEEecCCchhHHHHHH
Confidence 9999999851 123333322210000 00 00000 1346889999999999999999
Q ss_pred hhhhhc
Q 029453 187 WLSQYI 192 (193)
Q Consensus 187 ~i~~~l 192 (193)
++.+.+
T Consensus 346 ~v~~~i 351 (362)
T 1zcb_A 346 DVKDTI 351 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987643
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=150.25 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=103.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC-------cccc------------CCCCCcceeEEEeCCeEEEEEEcCChhhhHH
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER-------LVQH------------QPTQYPTSEELSIGKIKFKAFDLGGHQMARR 79 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~-------~~~~------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (193)
+.++|+++|++++|||||+++|.+.. +... ..|.......+...+..+.+||||||++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 56899999999999999999998631 1100 0022222223445678999999999999988
Q ss_pred hHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HH----HHHHhhCCCcccc
Q 029453 80 VWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAAS-ED----ELRYHMGLTNFTT 153 (193)
Q Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~ 153 (193)
.+..++..+|++++|+|++++...+.. ..+..+ .. .++| +++++||+|+..... .+ ++.+.+....+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~-~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~-- 154 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLA-RQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGY-- 154 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHH-HH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTS--
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHH-HH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCC--
Confidence 888889999999999999985432222 222222 22 3678 789999999974211 11 12222111100
Q ss_pred CCCcccCCCCCCccEEEEEEeeecCCC----------hhHHHHhhhhhc
Q 029453 154 GKGNVNLDNTNVRPLEVFMCSIVRKMG----------YGEGFKWLSQYI 192 (193)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~Sa~~~~g----------i~~~~~~i~~~l 192 (193)
.....+++++||++|.| +.++++.|.+.+
T Consensus 155 ----------~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 155 ----------KGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp ----------CTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred ----------CcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 00235899999999875 889999987654
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-21 Score=150.91 Aligned_cols=157 Identities=17% Similarity=0.129 Sum_probs=99.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC--Cccc--------------------------------cCCCCCcceeEEEeCC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE--RLVQ--------------------------------HQPTQYPTSEELSIGK 63 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 63 (193)
++.++|+++|++|+|||||+++|.+. .+.. ...|.......+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46789999999999999999999754 2210 1123334445567778
Q ss_pred eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHH------HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q 029453 64 IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESK------RELDALLSDEALADVPFLILGNKIDIPYAA 137 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~------~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~ 137 (193)
..+.+||||||+++...+..++..+|++++|+|+++. +++... .....+.... ...|+++++||+|+....
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~g-sfe~~~~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG-EYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTT-HHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSST
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCC-ccccccccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCcc
Confidence 8999999999999998888999999999999999983 444221 1122222221 224699999999997521
Q ss_pred -CH---HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHH
Q 029453 138 -SE---DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGF 185 (193)
Q Consensus 138 -~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 185 (193)
.. ++...++....-.... ....++++++||++|.|+.+++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGF--------NTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTC--------CCTTCEEEECBTTTTBTTTBCC
T ss_pred ccHHHHHHHHHHHHHHHHHcCC--------CcCCceEEEeecccCccccccc
Confidence 11 1111211111000000 0023689999999999998554
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=147.48 Aligned_cols=157 Identities=17% Similarity=0.092 Sum_probs=100.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc---cc----------CC-----------------------CCCcceeEEEe
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV---QH----------QP-----------------------TQYPTSEELSI 61 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~---~~----------~~-----------------------t~~~~~~~~~~ 61 (193)
+..++|+++|.+++|||||+++|.+.... .. .. |.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 45689999999999999999999755311 00 00 11222334556
Q ss_pred CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--H
Q 029453 62 GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS--E 139 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~ 139 (193)
.+..+.+||||||+++...+..++..+|++++|+|++++...+ ...++..+ ... ...|+++|+||+|+..... .
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~-~~~--~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIA-SLL--GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHH-HHT--TCCEEEEEEECTTTTTSCHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHH-HHc--CCCeEEEEEEcCcCCcccHHHH
Confidence 7789999999999999888888899999999999999864222 22222222 221 2246999999999974221 1
Q ss_pred HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHH
Q 029453 140 DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFK 186 (193)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 186 (193)
++...++.... .. .. ......+++++||++|.|++++++
T Consensus 178 ~~i~~~~~~~~-~~-~g------~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 178 ESIKADYLKFA-EG-IA------FKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHH-HT-TT------CCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHH-HH-hC------CCccCceEEEEeccCCCCcccccc
Confidence 11222111100 00 00 001347899999999999998543
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-21 Score=147.91 Aligned_cols=145 Identities=14% Similarity=0.005 Sum_probs=104.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 101 (193)
+|+++|.+++|||||+++|. ....|.......+..++..+.+||||||++|.......+..+|++++|+| ++..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~ 96 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGL 96 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCC
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCC
Confidence 99999999999999999998 22234455555666778899999999999998877888899999999999 5432
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcE-EEEee-CCCCCCCCCHH----HHHHhhCCCccccCCCcccCCCCCCccEEEEE--E
Q 029453 102 RFSESKRELDALLSDEALADVPF-LILGN-KIDIPYAASED----ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM--C 173 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pv-iiv~n-K~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 173 (193)
......++..+. . .+.|. ++++| |+|+ .....+ ++.+.+.... ...+++++ +
T Consensus 97 -~~qt~e~~~~~~-~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~--------------~~~~~ii~~~~ 156 (370)
T 2elf_A 97 -DAHTGECIIALD-L---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTV--------------LQDWECISLNT 156 (370)
T ss_dssp -CHHHHHHHHHHH-H---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTST--------------TTTCEEEECCC
T ss_pred -cHHHHHHHHHHH-H---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcC--------------CCceEEEeccc
Confidence 223333333332 2 35677 88999 9999 422212 2222222111 13468999 9
Q ss_pred eeec---CCChhHHHHhhhhhc
Q 029453 174 SIVR---KMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~---~~gi~~~~~~i~~~l 192 (193)
||++ +.|+++++++|.+.+
T Consensus 157 SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 157 NKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp CTTSSSTTTTHHHHHHHHHHHH
T ss_pred ccccCcCCCCHHHHHHHHHhhc
Confidence 9999 999999999987653
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-21 Score=156.21 Aligned_cols=164 Identities=20% Similarity=0.188 Sum_probs=105.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcceeEEEe------------------CCeEEEEEEcCChhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP---TQYPTSEELSI------------------GKIKFKAFDLGGHQM 76 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~~~~~~------------------~~~~~~~~D~~g~~~ 76 (193)
.+.++|+++|++++|||||++++.+.......+ |.......... ....+.+||||||+.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 367899999999999999999998765433222 11111222211 112589999999999
Q ss_pred hHHhHHhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH--------------
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYD---KERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE-------------- 139 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~-------------- 139 (193)
|...+..++..+|++|+|+|+++ ++++..+. .+ .. .++|+++++||+|+.+....
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l-~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----IL-RM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HH-HH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HH-HH---cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 98887778888999999999998 44433222 22 22 47899999999999642210
Q ss_pred H-----------HHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 140 D-----------ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 140 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+ ++...+....+..... ..+ .......+++++||++|.|+++++++|...
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~-~~l-~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~ 215 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERF-DRV-TDFASQVSIIPISAITGEGIPELLTMLMGL 215 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEG-GGC-SCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHH-HHH-HhccCcceEEEEeccCCCCchhHHHHHHhh
Confidence 1 1111111111100000 000 011256799999999999999999999764
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-20 Score=146.39 Aligned_cols=156 Identities=16% Similarity=0.061 Sum_probs=102.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC--Cccc--------------------------------cCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE--RLVQ--------------------------------HQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~ 62 (193)
.+..++|+++|.+++|||||+++|.+. .+.. ...|.......+...
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 456789999999999999999999753 1110 122445555667778
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE---RFS---ESKRELDALLSDEALADVP-FLILGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~ 135 (193)
+..+.+||||||+++...+..++..+|++++|+|++++. +|+ .....+. +... .+.| +++++||+|+..
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~-~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHH---TTCCEEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHH-HHHH---cCCCeEEEEEEcccccc
Confidence 899999999999999988888999999999999998753 110 1112222 2222 2555 999999999973
Q ss_pred CCC--HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHH
Q 029453 136 AAS--EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184 (193)
Q Consensus 136 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 184 (193)
... .++...++....-.... .....+++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~--------~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGY--------NPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTC--------CGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCC--------CccCceEEEeecccCcCcccc
Confidence 111 11222221110000000 002367999999999999754
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.2e-20 Score=133.98 Aligned_cols=120 Identities=10% Similarity=0.075 Sum_probs=81.0
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCCCCcceeEEEeCCeEEEEEEcCCh-----------hhhHH
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-----QPTQYPTSEELSIGKIKFKAFDLGGH-----------QMARR 79 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~-----------~~~~~ 79 (193)
.....++|+++|++|||||||+|++.+...... ..|.........+.+..+.+|||||. ..+..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 345779999999999999999999998876532 22445556677888899999999993 34455
Q ss_pred hHHhhhccCCEEEEEEeCCChhhHH-HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q 029453 80 VWKDYYAKVDAVVYLIDAYDKERFS-ESKRELDALLSDEALADVPFLILGNKIDIPYAA 137 (193)
Q Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~ 137 (193)
.+..+...+|++++|+|+++..... ....++...+... ...|+++|+||+|+....
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC---
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcc
Confidence 5555667889999999997643311 1222222222110 246999999999987443
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-20 Score=139.95 Aligned_cols=141 Identities=16% Similarity=0.217 Sum_probs=98.9
Q ss_pred CCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhCCCCCC
Q 029453 52 QYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY----------DKERFSESKRELDALLSDEALAD 121 (193)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~ 121 (193)
.+.....+..++..+.+||++|++.++..|..++++++++|+|+|++ +..++.+...++..+.+.....+
T Consensus 149 iGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~ 228 (340)
T 4fid_A 149 TGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKG 228 (340)
T ss_dssp CSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTT
T ss_pred eeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCC
Confidence 34445566778899999999999999999999999999999999998 67889999999999987766678
Q ss_pred CcEEEEeeCCCCCCC-----------------CCHHHHHHhhCCCc------cccCCCcc----cCCCCCCccEEEEEEe
Q 029453 122 VPFLILGNKIDIPYA-----------------ASEDELRYHMGLTN------FTTGKGNV----NLDNTNVRPLEVFMCS 174 (193)
Q Consensus 122 ~pviiv~nK~Dl~~~-----------------~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~~~~~~~~S 174 (193)
.|+++++||+|+... ...++..+.+...+ ........ ++.....+.+.++.+|
T Consensus 229 ~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~Ts 308 (340)
T 4fid_A 229 AVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTN 308 (340)
T ss_dssp SEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEEC
T ss_pred CeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEE
Confidence 999999999998520 11222111111111 00000000 0000001357889999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|++..|++.+|+.+.+.+
T Consensus 309 A~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 309 ATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred eeCcHHHHHHHHHHHHHH
Confidence 999999999999887643
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-20 Score=140.40 Aligned_cols=157 Identities=16% Similarity=0.170 Sum_probs=84.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-cc--------CCCCCcceeEEEe--CC--eEEEEEEcCChh-------hh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QH--------QPTQYPTSEELSI--GK--IKFKAFDLGGHQ-------MA 77 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~--------~~t~~~~~~~~~~--~~--~~~~~~D~~g~~-------~~ 77 (193)
...++|+++|.+|+|||||+|++++.... .. .+|.+........ ++ ..+.+|||||+. .+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 35789999999999999999998766543 22 3344444444333 33 489999999972 22
Q ss_pred HHhH-------Hhhhc-------------cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q 029453 78 RRVW-------KDYYA-------------KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA 137 (193)
Q Consensus 78 ~~~~-------~~~~~-------------~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~ 137 (193)
.... ..++. .+|+++++++.+..........++..+ .. ++|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHH
Confidence 2222 33333 378999999876532112223333333 22 78999999999986433
Q ss_pred CHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
........+.... . ...++++++||+++.|+++++++|.+.+
T Consensus 161 e~~~~~~~i~~~l-~------------~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQIMKEI-Q------------EHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHH-H------------HTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHH-H------------HcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 3222222211111 0 0124578889999999999999987653
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-20 Score=146.73 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=89.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCC--cc--------------------------------ccCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDER--LV--------------------------------QHQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 62 (193)
.+..++|+++|++++|||||+++|.... +. ....|.......+..+
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 3567899999999999999999986421 10 0011333334456677
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE---RFS---ESKRELDALLSDEALADVP-FLILGNKIDIPY 135 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~ 135 (193)
+..+.+||||||++|...+..++..+|++|+|+|++++. +|. .....+. +... .++| +++++||+|+..
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~-~~~~---~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAV-LART---QGINHLVVVINKMDEPS 195 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHH-HHHH---TTCSSEEEEEECTTSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHH-HHHH---cCCCEEEEEEECccCCC
Confidence 889999999999999888888889999999999999862 111 1111111 1112 3676 999999999964
Q ss_pred CC-CHH-------HHHHhhCCC-ccccCCCcccCCCCCCccEEEEEEeeecCCChhHHH
Q 029453 136 AA-SED-------ELRYHMGLT-NFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGF 185 (193)
Q Consensus 136 ~~-~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 185 (193)
.. +.+ ++...+... -+. ....++++++||++|.|+.+++
T Consensus 196 ~~~~~~~~~~i~~e~~~~l~~~~g~~-----------~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 196 VQWSEERYKECVDKLSMFLRRVAGYN-----------SKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHCCC-----------HHHHEEEEECBTTTTBTTSSCC
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCCC-----------ccCCceEEeccccccccccccc
Confidence 22 221 122211110 000 0024789999999999998765
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-21 Score=145.18 Aligned_cols=128 Identities=20% Similarity=0.301 Sum_probs=88.4
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY----------DKERFSESKRELDALLSDEALADVPFLILGNKID 132 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D 132 (193)
...+.+|||+|++.++..+..++++++++|+|+|++ +..++.+...++..+.......+.|+++++||+|
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~D 261 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcc
Confidence 468999999999999999999999999999999998 7788999999999987654446899999999999
Q ss_pred CCCC----CC-------------------HHHHHHhhCCCccccCCCcccC-CCCCCccEEEEEEeeecCCChhHHHHhh
Q 029453 133 IPYA----AS-------------------EDELRYHMGLTNFTTGKGNVNL-DNTNVRPLEVFMCSIVRKMGYGEGFKWL 188 (193)
Q Consensus 133 l~~~----~~-------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 188 (193)
+... .. .++........+ .... ..+. .......+.+++|||+++.||+++|+++
T Consensus 262 L~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f-~~l~-~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 262 IFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKF-EELY-YQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHH-HHHH-HHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHH-HHhh-hccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 8411 10 111111100000 0000 0000 0000123567899999999999999998
Q ss_pred hhhc
Q 029453 189 SQYI 192 (193)
Q Consensus 189 ~~~l 192 (193)
.+.+
T Consensus 340 ~~~I 343 (354)
T 2xtz_A 340 DETL 343 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-21 Score=158.81 Aligned_cols=160 Identities=17% Similarity=0.103 Sum_probs=86.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc----------------------------------cCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ----------------------------------HQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~ 62 (193)
.+..++|+++|++++|||||+++|.+..... ...|.......+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4567899999999999999999995321000 011333334445556
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh---hH--HHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE---RF--SESKRELDALLSDEALADVP-FLILGNKIDIPYA 136 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~ 136 (193)
+..+.+||||||+.|...+..++..+|++|+|+|++++. .+ .........++.. .++| +++|+||+|+...
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGTT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccccc
Confidence 788999999999998877777788999999999998642 11 1111112222222 2555 9999999999642
Q ss_pred CC--HH----HHHHhh-CCCccccCCCcccCCCCCCccEEEEEEeeecCCChh--------------HHHHhhhhh
Q 029453 137 AS--ED----ELRYHM-GLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYG--------------EGFKWLSQY 191 (193)
Q Consensus 137 ~~--~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~--------------~~~~~i~~~ 191 (193)
.. .+ ++...+ ...- .....++++++||++|.|+. .+++.|...
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g------------~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~ 394 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVG------------FKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL 394 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSC------------CCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHHHhhC------------CCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence 11 11 222222 1111 01135789999999999998 677777553
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-19 Score=135.59 Aligned_cols=158 Identities=17% Similarity=0.174 Sum_probs=97.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcc---ee----------------------------------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYPT---SE---------------------------------- 57 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~---~~---------------------------------- 57 (193)
...++|+|+|.+|||||||+|++.+..+.... .|..+. ..
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 46789999999999999999999988752111 011110 00
Q ss_pred --------------------E---EEeCCeEEEEEEcCChhh-------------hHHhHHhhhccCCEEEEEEeCCChh
Q 029453 58 --------------------E---LSIGKIKFKAFDLGGHQM-------------ARRVWKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 58 --------------------~---~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~ 101 (193)
. .......+.+|||||... +......++..+|++++|+|.++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 0 111335799999999643 4555667788999999999975432
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec--
Q 029453 102 RFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS--EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR-- 177 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-- 177 (193)
........+...+.. .+.|+++|+||+|+..... .+.+...+. . ......++..+|+.+
T Consensus 182 ~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~--~------------~~~~~~~v~~~sa~~~~ 244 (315)
T 1jwy_B 182 LANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTDAMEVLTGRVI--P------------LTLGFIGVINRSQEDII 244 (315)
T ss_dssp STTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCCCHHHHTTSSS--C------------CTTCEEECCCCCHHHHS
T ss_pred hhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchHHHHHHhCCCc--c------------CCCCeEEEecCChhhhc
Confidence 111111122233322 4789999999999974332 222221100 0 001335667777777
Q ss_pred -CCChhHHHHhhhhhc
Q 029453 178 -KMGYGEGFKWLSQYI 192 (193)
Q Consensus 178 -~~gi~~~~~~i~~~l 192 (193)
+.|+.++++.+.+.+
T Consensus 245 ~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 245 AKKSIRESLKSEILYF 260 (315)
T ss_dssp SSCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 899999999876543
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.81 E-value=9.9e-19 Score=144.62 Aligned_cols=115 Identities=16% Similarity=0.059 Sum_probs=86.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC--Ccc-------------------ccCCCCCcceeEEEeCCeEEEEEEcCChh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE--RLV-------------------QHQPTQYPTSEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~--~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (193)
.++..+|+++|++|+|||||++++... ... ....|.......+.+.+..+.+|||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 356789999999999999999999731 110 11224445556677788999999999999
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
.+......++..+|++++|+|+++....+....|. .+.. .++|+++++||+|+...
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH----cCCCEEEEEECCCcccC
Confidence 99888888999999999999999876555544433 3322 37999999999999754
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=129.27 Aligned_cols=155 Identities=19% Similarity=0.243 Sum_probs=95.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce--eEEEeCCeEEEEEEcCChh----------hhHHhHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS--EELSIGKIKFKAFDLGGHQ----------MARRVWKD 83 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~----------~~~~~~~~ 83 (193)
..+..+|+++|++|||||||++++.+..+. .+.++.+... ..+.+++ .+.+|||||+. .+......
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 346789999999999999999999987632 2233333222 2333333 57899999973 23333333
Q ss_pred hh---ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHHhhCCCccccCCC
Q 029453 84 YY---AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE----DELRYHMGLTNFTTGKG 156 (193)
Q Consensus 84 ~~---~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~ 156 (193)
++ ..++++++++|++++.+... ..+..++.. .+.|+++++||+|+...... ..++..+....
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~------ 170 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFN------ 170 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC------
T ss_pred HHHhhhcccEEEEEEECCCCCchhH--HHHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC------
Confidence 44 46889999999987644322 112222222 47899999999998643221 12222221111
Q ss_pred cccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....+++||+++.|+++++++|.+.+
T Consensus 171 ---------~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 171 ---------GDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp ---------SCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------CCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 236789999999999999999997754
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-19 Score=151.06 Aligned_cols=159 Identities=18% Similarity=0.147 Sum_probs=105.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCC-------cc--------ccCC----CCCcceeEEEeCCeEEEEEEcCChhhh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDER-------LV--------QHQP----TQYPTSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~-------~~--------~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
.+..++|+++|++++|||||+++|.+.. +. ..+. |.......+...+..+.+||||||++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4567899999999999999999997631 00 0111 222223345556789999999999999
Q ss_pred HHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-H----HHHHHhhCCCcc
Q 029453 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAAS-E----DELRYHMGLTNF 151 (193)
Q Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~~-~----~~~~~~~~~~~~ 151 (193)
...+..++..+|++|+|+|++++...+ ...++..+. . .++| +++++||+|+..... . +++...+....+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~-~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGR-Q---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHH-H---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHH-H---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 888888899999999999998853222 222222222 2 3677 789999999974211 1 112221111100
Q ss_pred ccCCCcccCCCCCCccEEEEEEeeecC--------CChhHHHHhhhhhc
Q 029453 152 TTGKGNVNLDNTNVRPLEVFMCSIVRK--------MGYGEGFKWLSQYI 192 (193)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~--------~gi~~~~~~i~~~l 192 (193)
....++++++||++| .|+++++++|.+.+
T Consensus 448 ------------~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 448 ------------PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp ------------CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred ------------cccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 002468999999999 57999999987643
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=143.78 Aligned_cols=151 Identities=17% Similarity=0.120 Sum_probs=102.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--cc----------------c---c----CCCCCcceeEEEeCCeEEEEEEcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDER--LV----------------Q---H----QPTQYPTSEELSIGKIKFKAFDLG 72 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~--~~----------------~---~----~~t~~~~~~~~~~~~~~~~~~D~~ 72 (193)
.+..+|+++|++|+|||||++++.... .. . . ..|.......+.+.+..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 457899999999999999999998531 10 0 0 012233445677888999999999
Q ss_pred ChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCCC
Q 029453 73 GHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGLT 149 (193)
Q Consensus 73 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~~ 149 (193)
|+..+......++..+|++|+|+|++++.. .....+...... .++|+++++||+|+..... .+++...++..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~--~~t~~~~~~~~~---~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~ 165 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVE--DRTRKLMEVTRL---RDTPILTFMNKLDRDIRDPMELLDEVENELKIG 165 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSC--HHHHHHHHHHTT---TTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccch--HHHHHHHHHHHH---cCCCEEEEEcCcCCccccHHHHHHHHHHHhCCC
Confidence 999988878888999999999999988632 222222222222 4789999999999975433 33455555544
Q ss_pred ccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhh
Q 029453 150 NFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWL 188 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 188 (193)
.. ...+-.+|++++.|+.++++..
T Consensus 166 ~~---------------~~~~pi~sa~~~~Gv~dl~~~~ 189 (529)
T 2h5e_A 166 CA---------------PITWPIGCGKLFKGVYHLYKDE 189 (529)
T ss_dssp EE---------------ESEEEESCGGGCCEEEETTTTE
T ss_pred cc---------------ceecceecccCcceeeehhhhh
Confidence 31 1122336777777777776543
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-19 Score=130.74 Aligned_cols=126 Identities=17% Similarity=0.159 Sum_probs=84.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhh------
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYY------ 85 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~------ 85 (193)
...+.++|+++|.+|+|||||+|++.+.......+ |.......+.+++..+.+|||||+..+......++
T Consensus 32 ~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 32 KDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp TTCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 34578999999999999999999999887532222 44555667788899999999999875533222222
Q ss_pred ---ccCCEEEEEEeCCChhhHHHH-HHHHHHHHhCCCC-CCCcEEEEeeCCCCC--CCCCHHHH
Q 029453 86 ---AKVDAVVYLIDAYDKERFSES-KRELDALLSDEAL-ADVPFLILGNKIDIP--YAASEDEL 142 (193)
Q Consensus 86 ---~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~-~~~pviiv~nK~Dl~--~~~~~~~~ 142 (193)
..+|++++|++++... +... ..++..+...... ...|+++|+||+|+. +....+++
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~ 174 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETF 174 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHH
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHH
Confidence 2689999999887643 3222 2333333222111 125999999999995 33444443
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=143.26 Aligned_cols=112 Identities=18% Similarity=0.142 Sum_probs=84.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc--------------c-------cCCCCCcceeEEEeCCeEEEEEEcCChhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV--------------Q-------HQPTQYPTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
.+..+|+++|++|+|||||++++.+.... . ...+.......+...+..+.+|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 46679999999999999999999743221 0 01133445556677889999999999999
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
+......++..+|++++|+|+++.-..+ ...++..+.. .++|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence 9888888999999999999998753322 2233333332 378999999999997
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.9e-19 Score=136.68 Aligned_cols=77 Identities=22% Similarity=0.555 Sum_probs=69.4
Q ss_pred EEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhCCCCCCCcEEEE
Q 029453 58 ELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYD----------KERFSESKRELDALLSDEALADVPFLIL 127 (193)
Q Consensus 58 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~pviiv 127 (193)
.+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+.+.....+.|++++
T Consensus 211 ~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLv 290 (402)
T 1azs_C 211 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 290 (402)
T ss_dssp EEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEE
T ss_pred EeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEE
Confidence 345667899999999999999999999999999999999998 8899999999999987655578999999
Q ss_pred eeCCCCC
Q 029453 128 GNKIDIP 134 (193)
Q Consensus 128 ~nK~Dl~ 134 (193)
+||+|+.
T Consensus 291 gNK~DL~ 297 (402)
T 1azs_C 291 LNKQDLL 297 (402)
T ss_dssp EECHHHH
T ss_pred EEChhhh
Confidence 9999984
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=143.82 Aligned_cols=164 Identities=20% Similarity=0.248 Sum_probs=102.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc--CCCC-Ccce--------eEEEe------------------------
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH--QPTQ-YPTS--------EELSI------------------------ 61 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~~t~-~~~~--------~~~~~------------------------ 61 (193)
....++|+|+|.+|+|||||+|++.+...... .|+. .++. .+..+
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 44688999999999999999999998775432 2222 1100 01110
Q ss_pred ----------------------CC----eEEEEEEcCChhhh---HHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHH
Q 029453 62 ----------------------GK----IKFKAFDLGGHQMA---RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDA 112 (193)
Q Consensus 62 ----------------------~~----~~~~~~D~~g~~~~---~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~ 112 (193)
+. ..+.+|||||.... ......+++.+|++++|+|++++.+......+. .
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~-~ 224 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLE-N 224 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHH-H
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHH-H
Confidence 00 35899999997653 344556788999999999998876555443332 2
Q ss_pred HHhCCCCCCCcEEEEeeCCCCCCCC-----CHHH-------HHH----hhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 113 LLSDEALADVPFLILGNKIDIPYAA-----SEDE-------LRY----HMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 113 ~~~~~~~~~~pviiv~nK~Dl~~~~-----~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
.+.. .+.|+++|+||+|+.... ..++ +.. .+.... . .........+++++||+
T Consensus 225 ~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~-~-------~~g~~~~~~~v~~vSAk 293 (695)
T 2j69_A 225 YIKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYC-T-------VEGQNIYDERVFELSSI 293 (695)
T ss_dssp HTTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGG-B-------SSSCBCGGGTEEECCHH
T ss_pred HHHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhh-c-------ccccccCCCcEEEEeCh
Confidence 3222 367899999999986321 1111 111 111000 0 00000122468999999
Q ss_pred --------------cCCChhHHHHhhhhhc
Q 029453 177 --------------RKMGYGEGFKWLSQYI 192 (193)
Q Consensus 177 --------------~~~gi~~~~~~i~~~l 192 (193)
++.|+++++++|.+.+
T Consensus 294 ~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 294 QALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 9999999999987643
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=135.33 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=104.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEeCC-eEEEEEEcCChhhh-------HHhHHhhhccCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSIGK-IKFKAFDLGGHQMA-------RRVWKDYYAKVD 89 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~~d 89 (193)
..|+++|++|||||||++.+.+.... ... .|..++...+...+ ..+.+||+||.... ...+....+.++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 46899999999999999999887532 222 24456666677765 78999999996321 112223456799
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDE-ALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
.+++++|++ .+.+..+..+...+.... .....|.++++||+|+......+++...+.. ...
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~-----------------~g~ 299 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAR-----------------EGL 299 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHT-----------------TTS
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHh-----------------cCC
Confidence 999999997 444555555554443321 1236899999999998643212223222211 114
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.++.+||+++.|+++++++|.+.+
T Consensus 300 ~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 300 AVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEECCCccCHHHHHHHHHHHH
Confidence 689999999999999999998754
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=138.41 Aligned_cols=115 Identities=18% Similarity=0.109 Sum_probs=85.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc--CCcc------------c-------cCCCCCcceeEEEeCCeEEEEEEcCChh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD--ERLV------------Q-------HQPTQYPTSEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~--~~~~------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (193)
.++..+|+++|.+|+|||||++++.. +... . ...|.......+.+.+..+.+|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 35678999999999999999999974 2211 0 1123444455677888999999999999
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
.+......++..+|++++|+|++++.+.+....| ..+.. .+.|+++|+||+|+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH----cCCCEEEEEECCCcccc
Confidence 8888888889999999999999987555444333 33332 37899999999999754
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=137.63 Aligned_cols=115 Identities=16% Similarity=-0.001 Sum_probs=83.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCC--ccc-------------------cCCCCCcceeEEEeCC-------eEEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDER--LVQ-------------------HQPTQYPTSEELSIGK-------IKFKA 68 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~--~~~-------------------~~~t~~~~~~~~~~~~-------~~~~~ 68 (193)
.++..+|+++|+.|+|||||++++.... +.. ...|.......+.+.+ ..+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 4567899999999999999999996421 110 0012222333455555 88999
Q ss_pred EEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 69 FDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
||||||..|......++..+|++|+|+|+++....+... .+.... . .++|+++++||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~-~---~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQAN-K---YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHH-H---cCCCEEEEEeCCCcccc
Confidence 999999999888888999999999999999864433332 233332 2 47899999999998743
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=127.44 Aligned_cols=155 Identities=13% Similarity=0.089 Sum_probs=94.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcce---------------------------------------
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYPTS--------------------------------------- 56 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~~--------------------------------------- 56 (193)
..++|+++|.+|||||||+|+|.+..+.+.. .|..+..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 5679999999999999999999988763111 1111110
Q ss_pred ------------eEEEe-CCeEEEEEEcCChh-------------hhHHhHHhhhccCC-EEEEEEeCCChhhHHHHHHH
Q 029453 57 ------------EELSI-GKIKFKAFDLGGHQ-------------MARRVWKDYYAKVD-AVVYLIDAYDKERFSESKRE 109 (193)
Q Consensus 57 ------------~~~~~-~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d-~ii~v~d~~~~~~~~~~~~~ 109 (193)
..+.. ....+.+|||||.. .+..+...++..++ ++++|+|++....-.....+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 01111 13679999999952 34556666776655 55556666543111122223
Q ss_pred HHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhh
Q 029453 110 LDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWL 188 (193)
Q Consensus 110 ~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 188 (193)
+..+ . ..+.|+++|+||+|+..... ..++.. ...+ ........++++||+++.|++++++++
T Consensus 190 ~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~---~~~~----------~l~~~~~~v~~~SA~~~~~i~~l~~~l 252 (353)
T 2x2e_A 190 AKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLE---NKLL----------PLRRGYIGVVNRSQKDIDGKKDITAAL 252 (353)
T ss_dssp HHHH-C---TTCTTEEEEEECGGGSCTTCCCHHHHT---TCSS----------CCTTCEEECCCCCHHHHHTTCCHHHHH
T ss_pred HHHh-C---cCCCceEEEeccccccCcchhHHHHHh---CCcc----------cccCCceEEEeCCcccccccccHHHHH
Confidence 3333 2 24789999999999974322 112211 1110 000133578999999999999999988
Q ss_pred hh
Q 029453 189 SQ 190 (193)
Q Consensus 189 ~~ 190 (193)
.+
T Consensus 253 ~~ 254 (353)
T 2x2e_A 253 AA 254 (353)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.8e-19 Score=137.29 Aligned_cols=80 Identities=23% Similarity=0.203 Sum_probs=47.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEE---------------------eC---CeEEEEEEcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELS---------------------IG---KIKFKAFDLGG 73 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~---------------------~~---~~~~~~~D~~g 73 (193)
++|+++|.+|||||||+|++.+.... ...| |..++..... +. ...+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987732 2222 4444444321 12 25799999999
Q ss_pred hhhh----HHhHH---hhhccCCEEEEEEeCCCh
Q 029453 74 HQMA----RRVWK---DYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 74 ~~~~----~~~~~---~~~~~~d~ii~v~d~~~~ 100 (193)
+... ..... .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8542 22222 345789999999999874
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-17 Score=121.04 Aligned_cols=118 Identities=16% Similarity=0.156 Sum_probs=79.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChhhhH-------HhHHhh-
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQMAR-------RVWKDY- 84 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~- 84 (193)
..+.++|+++|.+|+|||||+|++++.......+ |.......+...+..+.+|||||+..+. .....+
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 3468999999999999999999999887542222 3334445667788899999999986542 112222
Q ss_pred -hccCCEEEEEEeCCChhhHHHH-HHHHHHHHhCCCC-CCCcEEEEeeCCCCCC
Q 029453 85 -YAKVDAVVYLIDAYDKERFSES-KRELDALLSDEAL-ADVPFLILGNKIDIPY 135 (193)
Q Consensus 85 -~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~-~~~pviiv~nK~Dl~~ 135 (193)
...+|++++|+|++.. ++... ..++..+...... ...|+++|+||+|+.+
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 2368999999988653 23322 2344444322110 1269999999999864
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-19 Score=137.29 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=74.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccC---------CCCCcceeEE--EeCC--eEEEEEEcCCh-------h
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQ---------PTQYPTSEEL--SIGK--IKFKAFDLGGH-------Q 75 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~---------~t~~~~~~~~--~~~~--~~~~~~D~~g~-------~ 75 (193)
....++|+++|++|+|||||++++++.... ... +|........ ...+ ..+.+|||||+ +
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 345789999999999999999998765432 111 2222221111 2223 37899999998 4
Q ss_pred hhHHhHH-------hhhcc-------------CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 76 MARRVWK-------DYYAK-------------VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 76 ~~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
.+..... .++.. +|+++|+++.+. .++......+...+. .++|+++|+||+|+..
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~-~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAIH----NKVNIVPVIAKADTLT 188 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSS-SSCCHHHHHHHHHTC----S-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCC-CCcchhHHHHHHHhc----cCCCEEEEEECCCCCC
Confidence 4444433 44432 346777776522 223444332322222 5789999999999964
Q ss_pred CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 136 AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
......+........ . ...++++++||+++.| ++.|.++.+.
T Consensus 189 ~~ev~~~k~~i~~~~----~---------~~~i~~~~~Sa~~~~~-~e~~~~l~~~ 230 (361)
T 2qag_A 189 LKERERLKKRILDEI----E---------EHNIKIYHLPDAESDE-DEDFKEQTRL 230 (361)
T ss_dssp HHHHHHHHHHHHHHT----T---------CC-CCSCCCC----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHH----H---------HCCCCEEeCCCcCCCc-chhHHHHHHH
Confidence 322211111111000 0 0235789999999998 7777666543
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=128.41 Aligned_cols=149 Identities=13% Similarity=0.136 Sum_probs=93.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcce---------------------------------------
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQP---TQYPTS--------------------------------------- 56 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~--------------------------------------- 56 (193)
.-++|+++|++|||||||+|++.+..+..... |..+..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 44599999999999999999999977532111 111100
Q ss_pred -------------eEE--E-eCCeEEEEEEcCChhhh-------------HHhHHhhhccCCEEEEEEeCCChhhHH-HH
Q 029453 57 -------------EEL--S-IGKIKFKAFDLGGHQMA-------------RRVWKDYYAKVDAVVYLIDAYDKERFS-ES 106 (193)
Q Consensus 57 -------------~~~--~-~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~~~~-~~ 106 (193)
..+ . .....+.+|||||...+ ......++.++|++++|+|.++.+... ..
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 011 1 12346899999997654 556677889999999999876543222 22
Q ss_pred HHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHH
Q 029453 107 KRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGF 185 (193)
Q Consensus 107 ~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 185 (193)
..... .....+.|+++|+||+|+..... ..+....+... ....++.+|++++.++++.+
T Consensus 193 ~~l~~----~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~v~~~s~~~i~~~~ 252 (360)
T 3t34_A 193 IKISR----EVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFK----------------LKYPWVGVVNRSQADINKNV 252 (360)
T ss_dssp HHHHH----HSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSC----------------CSSCCEEECCCCHHHHHTTC
T ss_pred HHHHH----HhcccCCCEEEEEeCCccCCCcccHHHHHcCcccc----------------ccCCeEEEEECChHHhccCC
Confidence 22222 22235789999999999974322 11221111111 22467889999888887765
Q ss_pred Hh
Q 029453 186 KW 187 (193)
Q Consensus 186 ~~ 187 (193)
.+
T Consensus 253 ~~ 254 (360)
T 3t34_A 253 DM 254 (360)
T ss_dssp CH
T ss_pred CH
Confidence 54
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-16 Score=127.81 Aligned_cols=122 Identities=17% Similarity=0.149 Sum_probs=87.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC------------------cccc---C----CCCCcceeEEEeCCeEEEEEEcCChh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER------------------LVQH---Q----PTQYPTSEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~------------------~~~~---~----~t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (193)
=+|+|+|+.++|||||..+++... .... + -|.......+.+++..+.++|||||.
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 379999999999999999985110 1111 1 14455667788999999999999999
Q ss_pred hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhC
Q 029453 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMG 147 (193)
Q Consensus 76 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~ 147 (193)
.|.......+.-+|++|+|+|+.++-..+.. ..|..... .++|.++++||+|...... .+++.+.++
T Consensus 112 DF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~----~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~ 181 (548)
T 3vqt_A 112 DFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRM----RATPVMTFVNKMDREALHPLDVMADIEQHLQ 181 (548)
T ss_dssp GCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHH----TTCCEEEEEECTTSCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHH----hCCceEEEEecccchhcchhHhhhhhhhhcC
Confidence 9998888899999999999999986333332 33333333 4899999999999864322 233555544
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-17 Score=127.39 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=94.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcC------Ccc--ccCC--CC-----------------Cccee-----------
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDE------RLV--QHQP--TQ-----------------YPTSE----------- 57 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~------~~~--~~~~--t~-----------------~~~~~----------- 57 (193)
...+.++|+++|++|||||||++.+... +.. ...+ +. .+...
T Consensus 75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (355)
T 3p32_A 75 DSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLG 154 (355)
T ss_dssp GCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHH
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCcccc
Confidence 3457789999999999999999998532 100 0000 00 00000
Q ss_pred -----------EEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEE
Q 029453 58 -----------ELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLI 126 (193)
Q Consensus 58 -----------~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvii 126 (193)
.+...+..+.+|||||..... ......+|++++|+|....+..+... ......|+++
T Consensus 155 ~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~---~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~iv 222 (355)
T 3p32_A 155 GVTRATRETVVLLEAAGFDVILIETVGVGQSE---VAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIV 222 (355)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECSCSSHH---HHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEE
T ss_pred chhHHHHHHHHHHhhCCCCEEEEeCCCCCcHH---HHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEE
Confidence 012246789999999954322 23457899999999987654332111 1113469999
Q ss_pred EeeCCCCCCCCCHHH----HHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 127 LGNKIDIPYAASEDE----LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 127 v~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
|+||+|+.+...... +...+.... . ....+..+++++||++|.|+++++++|.+.+
T Consensus 223 VlNK~Dl~~~~~~~~~~~~l~~~l~~~~--~--------~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 223 VVNKADGEHHKEARLAARELSAAIRLIY--P--------REALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHHHHHS--T--------TCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred EEECCCCcChhHHHHHHHHHHHHHhhcc--c--------cccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 999999864322222 222211100 0 0001235799999999999999999997753
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=111.39 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=82.3
Q ss_pred cCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHH---HHHHhCCC-CCCCcEEEEeeCC-CCCCCCCHHHHHHh
Q 029453 71 LGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKREL---DALLSDEA-LADVPFLILGNKI-DIPYAASEDELRYH 145 (193)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~pviiv~nK~-Dl~~~~~~~~~~~~ 145 (193)
.+||++.+..|..|++++|++|||+|++|.+.+. ....+ ..++.... ..+.|++|.+||. |++..-+..++.+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 3488899999999999999999999999876543 44444 34443332 3689999999995 78888899999999
Q ss_pred hCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 146 MGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
+++... .+.|.++.|||++|+|+.+.++||.+.++
T Consensus 188 L~L~~l-------------~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 188 LHLNLL-------------NHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp TTGGGG-------------CSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred cCCcCC-------------CCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 988762 15699999999999999999999988753
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=129.34 Aligned_cols=115 Identities=20% Similarity=0.223 Sum_probs=78.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc----ccCCCCCcceeE-----------------------------------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV----QHQPTQYPTSEE----------------------------------- 58 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~----~~~~t~~~~~~~----------------------------------- 58 (193)
...++|+|+|.+|+|||||+|++.+.... ...++.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999988753 222222111000
Q ss_pred ---EEeCC---eEEEEEEcCChhh-----------hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCC
Q 029453 59 ---LSIGK---IKFKAFDLGGHQM-----------ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALAD 121 (193)
Q Consensus 59 ---~~~~~---~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (193)
+...+ ..+.+|||||+.. +......++..+|++++|+|+++.........++..+. . .+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~-~---~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR-G---HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT-T---CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH-h---cC
Confidence 00000 2588999999764 44566667889999999999987533344444444442 2 46
Q ss_pred CcEEEEeeCCCCCCC
Q 029453 122 VPFLILGNKIDIPYA 136 (193)
Q Consensus 122 ~pviiv~nK~Dl~~~ 136 (193)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 899999999999753
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-16 Score=122.11 Aligned_cols=153 Identities=15% Similarity=0.141 Sum_probs=87.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC------Ccc--ccCCCC-------------------Ccce--------eE----
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE------RLV--QHQPTQ-------------------YPTS--------EE---- 58 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~------~~~--~~~~t~-------------------~~~~--------~~---- 58 (193)
.....|+|+|++|||||||+|.+.+. +.. ...++. .+.. ..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 34789999999999999999999752 110 111100 0000 00
Q ss_pred ----------EEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEe
Q 029453 59 ----------LSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILG 128 (193)
Q Consensus 59 ----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~ 128 (193)
+...+..+.++||+|..... ....+.+|++++|+|++++...+.... .+ ...|.++|+
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVl 219 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAV 219 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC---------------------CCSCSEEEE
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEE
Confidence 01246788999999964222 334678999999999987532221111 11 246889999
Q ss_pred eCCCCCCCCC----HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 129 NKIDIPYAAS----EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 129 nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
||+|+.+... ..++...+.... ..+ ..+..+++++||++|.|+++++++|.+.+
T Consensus 220 NK~Dl~~~~~~~~~~~~l~~~l~~~~-~~a---------~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 220 TKSDGDLIVPARRIQAEYVSALKLLR-KRS---------QVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CCCSGGGHHHHHHHHHHHHHHHTTCC---------------CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eeecCCCchhHHHHHHHHHHHHHhcC-ccc---------cCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 9999863211 112222222111 000 00234789999999999999999997653
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-15 Score=113.59 Aligned_cols=79 Identities=20% Similarity=0.326 Sum_probs=59.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCC-----------------eEEEEEEcCChhhhHH-
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGK-----------------IKFKAFDLGGHQMARR- 79 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~~- 79 (193)
++|+++|.+|||||||+|++.+.... ...| |..++...+.+++ ..+.+|||||+.++..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987743 2222 6666666666654 5799999999875432
Q ss_pred ------hHHhhhccCCEEEEEEeCCC
Q 029453 80 ------VWKDYYAKVDAVVYLIDAYD 99 (193)
Q Consensus 80 ------~~~~~~~~~d~ii~v~d~~~ 99 (193)
.+..+++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23345788999999999985
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.1e-16 Score=130.91 Aligned_cols=114 Identities=16% Similarity=0.112 Sum_probs=84.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCC------------cccc-------CCCCCcceeEEEeC--------------
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDER------------LVQH-------QPTQYPTSEELSIG-------------- 62 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~------------~~~~-------~~t~~~~~~~~~~~-------------- 62 (193)
...+..+|+|+|++|+|||||++++.... +... ..|.......+.+.
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~ 94 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 94 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence 45567899999999999999999997531 1100 11323333334443
Q ss_pred --CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 63 --KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 63 --~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
+..+.+||||||.+|...+..++..+|++|+|+|++++.+.+....|.... . .++|+++++||+|+.
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcc
Confidence 578999999999999988899999999999999999986666654443332 2 478999999999986
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-16 Score=131.53 Aligned_cols=166 Identities=19% Similarity=0.171 Sum_probs=109.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCcc------------cc-------CCCCCcceeEEEeCCeEEEEEEcCChhhhHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLKD--ERLV------------QH-------QPTQYPTSEELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~--~~~~------------~~-------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
+|+|+|+.++|||||..++.. +... .. .-|.......+.+++..+.++|||||..|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 689999999999999999851 1110 00 01333444566778899999999999999999
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccccCCC-
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFTTGKG- 156 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~- 156 (193)
....+.-+|++|+|+|+.++-..+. ...+..... .++|.++++||+|....... +++.+.++....-....
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~ 158 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQAQT-RILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 158 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence 9999999999999999987622222 223333322 37899999999998743332 33544444221100000
Q ss_pred --c-c-----------------------------cCCC-----------CCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 157 --N-V-----------------------------NLDN-----------TNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 --~-~-----------------------------~~~~-----------~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
. . .... ......+++..||+++.|++.+++.|.+++
T Consensus 159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 0 0 0000 000225788899999999999999997754
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-15 Score=123.27 Aligned_cols=156 Identities=13% Similarity=0.083 Sum_probs=97.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcc---------------------------------------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYPT--------------------------------------- 55 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~--------------------------------------- 55 (193)
-.-++|+|+|.+++|||||+|.+.+..+.+.. .|..+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 36689999999999999999999987752111 121110
Q ss_pred ------------eeEEEeC-CeEEEEEEcCChhh-------------hHHhHHhhh-ccCCEEEEEEeCCChhhHHHHHH
Q 029453 56 ------------SEELSIG-KIKFKAFDLGGHQM-------------ARRVWKDYY-AKVDAVVYLIDAYDKERFSESKR 108 (193)
Q Consensus 56 ------------~~~~~~~-~~~~~~~D~~g~~~-------------~~~~~~~~~-~~~d~ii~v~d~~~~~~~~~~~~ 108 (193)
...+... ...+.++||||... .......++ ..+|++++|+|+++.........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0111111 23588999999432 333444455 46899999999987522222222
Q ss_pred HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHh
Q 029453 109 ELDALLSDEALADVPFLILGNKIDIPYAASE-DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKW 187 (193)
Q Consensus 109 ~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 187 (193)
.+..+ .. .+.|+++|+||+|+...... ..+.. -.... ......+++++||++|.|++++++.
T Consensus 209 ll~~L-~~---~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~------------l~lg~~~VV~iSA~~G~GvdeL~ea 271 (772)
T 3zvr_A 209 IAKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLE-NKLLP------------LRRGYIGVVNRSQKDIDGKKDITAA 271 (772)
T ss_dssp HHHHH-CT---TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSC------------CSSCEEECCCCCCEESSSSEEHHHH
T ss_pred HHHHH-Hh---cCCCEEEEEeCcccCCcchhhHHHHH-HHhhh------------hhccCCceEEecccccccchhHHHH
Confidence 33333 22 47899999999999743322 12211 00000 0013467899999999999999998
Q ss_pred hhh
Q 029453 188 LSQ 190 (193)
Q Consensus 188 i~~ 190 (193)
|.+
T Consensus 272 I~~ 274 (772)
T 3zvr_A 272 LAA 274 (772)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-16 Score=120.68 Aligned_cols=153 Identities=17% Similarity=0.143 Sum_probs=89.8
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc------CCcc--ccCC--CC-----------------CcceeE-----------
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD------ERLV--QHQP--TQ-----------------YPTSEE----------- 58 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~------~~~~--~~~~--t~-----------------~~~~~~----------- 58 (193)
..+...|+++|++|+||||+++.+.+ .+.. ...+ +. .+....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 45678999999999999999999852 1110 0000 00 000000
Q ss_pred -----------EEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEE
Q 029453 59 -----------LSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLIL 127 (193)
Q Consensus 59 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv 127 (193)
+...+.++.++||||....... ....+|++++|+|++..+.++.... .. .+.|.++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv 200 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIV 200 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEE
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEE
Confidence 0134678999999997654332 3578999999999976532211100 11 14688999
Q ss_pred eeCCCCCCCCCHH----HHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 128 GNKIDIPYAASED----ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 128 ~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+||+|+....... ++...+.... . . ...+..+++++||++|.|+++++++|.+.
T Consensus 201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~--~-~-------~~~~~~~vi~iSA~~g~gi~~L~~~l~~~ 258 (341)
T 2p67_A 201 INKDDGDNHTNVAIARHMYESALHILR--R-K-------YDEWQPRVLTCSALEKRGIDEIWHAIIDF 258 (341)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSC--C-S-------BTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHhcc--c-c-------ccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence 9999986432222 2222111100 0 0 00023478999999999999999999764
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-16 Score=114.73 Aligned_cols=147 Identities=15% Similarity=0.184 Sum_probs=89.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-------cCCCC----------CcceeEE------------------EeCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-------HQPTQ----------YPTSEEL------------------SIGK 63 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-------~~~t~----------~~~~~~~------------------~~~~ 63 (193)
+..+|+++|.+|||||||++++.+..... ..+.. +.....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 55799999999999999999997542110 01100 0000111 1134
Q ss_pred eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHH
Q 029453 64 IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDE 141 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~ 141 (193)
.++.+|||+|+..... .+-...+.+++|+|+.+.... ... +... .+.|+++|+||+|+... ...++
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~-~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEK-HPEI------FRVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHH-CHHH------HHTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhh-hhhh------hhcCCEEEEecccCCcchhhHHHH
Confidence 5788999999511100 111246889999999765321 111 1111 25789999999998632 34444
Q ss_pred HHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+...+.... ...+++++||++|.|+++++++|.+.+
T Consensus 177 ~~~~~~~~~---------------~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 177 MKADAKLIN---------------PRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp HHHHHHHHC---------------TTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHhC---------------CCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 444332111 225789999999999999999998754
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.7e-16 Score=117.00 Aligned_cols=152 Identities=15% Similarity=0.203 Sum_probs=71.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC-CccccC---------CCCCcceeEEEe----CCeEEEEEEcCCh-------h
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE-RLVQHQ---------PTQYPTSEELSI----GKIKFKAFDLGGH-------Q 75 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~-~~~~~~---------~t~~~~~~~~~~----~~~~~~~~D~~g~-------~ 75 (193)
..-+++|+++|++|||||||++++++. .+.... ++.......+.. ....+.+||++|+ +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 446789999999999999999998875 332211 121111111111 1357899999997 4
Q ss_pred hhHHhHH-------hhhc-------------cCCEEEEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 76 MARRVWK-------DYYA-------------KVDAVVYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 76 ~~~~~~~-------~~~~-------------~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.+..... .++. .+++++|+.+.+.. ++.... ..+..+ . ...|+++|+||+|+.
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~l-~----~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAI-H----NKVNIVPVIAKADTL 168 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHHH-T----TTSCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHHH-H----hcCCEEEEEEeCCCC
Confidence 4333332 3322 23456666664321 122222 233333 1 367999999999986
Q ss_pred CCCCHH----HHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 135 YAASED----ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 135 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...... +..+.... ..++++++||+++ |++++|+++.+.+
T Consensus 169 ~~~e~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 169 TLKERERLKKRILDEIEE-----------------HNIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp CHHHHHHHHHHHHHHHHH-----------------TTCCCCCCC----------CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-----------------cCCeEEecCCccc-cccHHHHHHHHHh
Confidence 421111 11111110 1246789999999 9999999887654
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-16 Score=116.96 Aligned_cols=125 Identities=12% Similarity=0.028 Sum_probs=67.6
Q ss_pred eEEEEEEcCChhhhHHh------HHhhhccCCEEEEEEeCCChhhHHHHHHH---HHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 64 IKFKAFDLGGHQMARRV------WKDYYAKVDAVVYLIDAYDKERFSESKRE---LDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~~~------~~~~~~~~d~ii~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.++.+|||||+...... ....+.. +++++++|+............ ....... .+.|+++|+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc---cCCCeEEEEeccccc
Confidence 47999999998765332 1124456 899999998643222222211 1111111 368999999999986
Q ss_pred CCCCHHHHHHhhCC-CccccCC----Cccc--------CCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 135 YAASEDELRYHMGL-TNFTTGK----GNVN--------LDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~~----~~~~--------~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....+++...+.. ..+.... .... .........+++++||++|.|+++++++|.+.+
T Consensus 185 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 185 SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp CHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 43222222222110 0000000 0000 000000113679999999999999999998754
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-14 Score=110.46 Aligned_cols=111 Identities=19% Similarity=0.142 Sum_probs=80.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCCeEEEEEEcCChhhh-------HHhHHhhhccCCE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGKIKFKAFDLGGHQMA-------RRVWKDYYAKVDA 90 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d~ 90 (193)
.+|+++|.||||||||+|++.+.... ..+| |..+....+.+.+..+.++||||.... .......++.+|+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 48999999999999999999987643 3333 778888999999999999999995321 1223345678999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCC
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSD-EALADVPFLILGNKIDI 133 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~Dl 133 (193)
+++|+|++++. ........++... ......|.++++||+|.
T Consensus 153 il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 153 LFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred cccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 99999999873 2222222222111 12246788999999996
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-15 Score=110.32 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=85.1
Q ss_pred cCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHH---HHHhCC-CCCCCcEEEEeeC-CCCCCCCCHHHHHHh
Q 029453 71 LGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELD---ALLSDE-ALADVPFLILGNK-IDIPYAASEDELRYH 145 (193)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~---~~~~~~-~~~~~pviiv~nK-~Dl~~~~~~~~~~~~ 145 (193)
.+||++.+..|..|++++|++|||+|++|.+++. ....+. .++... ...+.|++|.+|| -|++...+..++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4578899999999999999999999999986644 333222 333221 1358999999997 589888899999999
Q ss_pred hCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 146 MGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
+++... .+.|.++.|||.+|+|+.+.++||.+.++
T Consensus 273 L~L~~l-------------~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 273 LHLNLL-------------NHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp TTGGGG-------------CSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred cCCccC-------------CCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 988762 15699999999999999999999988763
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.2e-14 Score=116.19 Aligned_cols=109 Identities=15% Similarity=0.024 Sum_probs=76.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--------------cccc---CC----CCCcceeEEEeC-------CeEEEEEEcCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER--------------LVQH---QP----TQYPTSEELSIG-------KIKFKAFDLGG 73 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~--------------~~~~---~~----t~~~~~~~~~~~-------~~~~~~~D~~g 73 (193)
+|+|+|+.++|||||..+|.... +... +. |.......+.+. ++.+.++||||
T Consensus 15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPG 94 (709)
T 4fn5_A 15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPG 94 (709)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCS
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCC
Confidence 79999999999999999985111 0000 11 222333344443 57899999999
Q ss_pred hhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
|..|.......+.-+|++|+|+|+.++-..+.- ..++.... .++|.++++||+|...
T Consensus 95 HvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~----~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 95 HVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANK----YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----HTCCEEEEEECSSSTT
T ss_pred CcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHH----cCCCeEEEEccccccC
Confidence 999999888999999999999999876322222 23333333 3899999999999863
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-15 Score=114.69 Aligned_cols=131 Identities=14% Similarity=-0.013 Sum_probs=95.5
Q ss_pred HHHHHHhcCCcc--ccCCCCCcceeEEEe-CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh-hHHHHHHHH
Q 029453 35 TLLHMLKDERLV--QHQPTQYPTSEELSI-GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE-RFSESKREL 110 (193)
Q Consensus 35 sl~~~l~~~~~~--~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~ 110 (193)
+++.++..+.+. .+.||.+... .... .+..+.+||+ ++++..++..++.++|++++|+|++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~-~~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRV-EYTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEE-EEECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEE-EEEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 567777777664 3456777433 2332 2237899999 8888888889999999999999999986 677778887
Q ss_pred HHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHh
Q 029453 111 DALLSDEALADVPFLILGNKIDIPYAASE---DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKW 187 (193)
Q Consensus 111 ~~~~~~~~~~~~pviiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 187 (193)
..+.. .++|+++|+||+|+.+.... .++...++. . .+++++||++|.|++++|++
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~-----------------~-~~~~~~SAktg~gv~~lf~~ 166 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYSG-----------------L-YPIVKTSAKTGMGIEELKEY 166 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTT-----------------T-SCEEECCTTTCTTHHHHHHH
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhh-----------------h-CcEEEEECCCCcCHHHHHHH
Confidence 76643 47999999999999643221 122222211 1 46899999999999999998
Q ss_pred hhh
Q 029453 188 LSQ 190 (193)
Q Consensus 188 i~~ 190 (193)
+..
T Consensus 167 l~g 169 (301)
T 1u0l_A 167 LKG 169 (301)
T ss_dssp HSS
T ss_pred hcC
Confidence 864
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-13 Score=105.90 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=57.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeC---------------------CeEEEEEEcCChhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIG---------------------KIKFKAFDLGGHQM 76 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~---------------------~~~~~~~D~~g~~~ 76 (193)
++|+++|.+|||||||+|++.+.... ...+ |..++....... ...+.+|||||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 58999999999999999999876421 2222 555665555432 35799999999764
Q ss_pred h-------HHhHHhhhccCCEEEEEEeCCC
Q 029453 77 A-------RRVWKDYYAKVDAVVYLIDAYD 99 (193)
Q Consensus 77 ~-------~~~~~~~~~~~d~ii~v~d~~~ 99 (193)
. ...+...++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 3 2233445789999999999975
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-14 Score=109.98 Aligned_cols=153 Identities=12% Similarity=0.096 Sum_probs=88.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc------CCcc--ccCCC--C-----------------CcceeE-----------
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD------ERLV--QHQPT--Q-----------------YPTSEE----------- 58 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~------~~~~--~~~~t--~-----------------~~~~~~----------- 58 (193)
..+...++++|++|||||||++.+.+ ++.. ...++ . .+....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 45677999999999999999999972 3321 10110 0 000000
Q ss_pred -----------EEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEE
Q 029453 59 -----------LSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLIL 127 (193)
Q Consensus 59 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv 127 (193)
+...+.++.++||||...... ...+.+|.+++|+|...++..+...... ...|.+++
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivv 199 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIA 199 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEE
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEE
Confidence 112577899999999754322 2346899999999986543211111100 13466888
Q ss_pred eeCCCCCCCCC-----HHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 128 GNKIDIPYAAS-----EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 128 ~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+||+|+.+... .+++...+..... .. ..+..+++.+||+++.|++++++.|.+.
T Consensus 200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~-~~---------~~~~~~vl~~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 200 VNKADDGDGERRASAAASEYRAALHILTP-PS---------ATWTPPVVTISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHTTBCC-SB---------TTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred EEchhccCchhHHHHHHHHHHHHHHhccc-cc---------cCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 89999753211 1122222211110 00 0012467889999999999999998764
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.4e-15 Score=115.92 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=67.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccC--------CCCCcceeEE--EeC--CeEEEEEEcCChhhhH------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQ--------PTQYPTSEEL--SIG--KIKFKAFDLGGHQMAR------ 78 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~--------~t~~~~~~~~--~~~--~~~~~~~D~~g~~~~~------ 78 (193)
.-+++|+++|++|||||||++.+++.... ... ++........ ... ...+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 35678999999999999999999987653 111 1111111111 111 2368999999976431
Q ss_pred -Hh-------HHh-----------hhcc--CCEEEEEEeCCChhhHHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 79 -RV-------WKD-----------YYAK--VDAVVYLIDAYDKERFSESK-RELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 79 -~~-------~~~-----------~~~~--~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
.. ... ++.+ +++++|+.+.+. .++.... .++..+ . .+.|+++|+||+|+...
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccH
Confidence 11 111 1223 345666655431 1233333 444444 2 37899999999998632
Q ss_pred CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 137 ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
.....+........ .. ..++++.+|++++.++++++..|.+
T Consensus 183 ~ev~~~k~~i~~~~-~~------------~~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 183 EECQQFKKQIMKEI-QE------------HKIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp HHHHHHHHHHHHHH-HH------------HTCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHH-HH------------cCCeEEeCCCCCCcCHHHHHHHHHh
Confidence 21211111111000 00 1134566777777777776665544
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-14 Score=103.48 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=40.2
Q ss_pred CCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 121 DVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 121 ~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..|.++|+||+|+... ...+++...+.... ...+++++||++|.|++++|++|.+.+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRIN---------------PDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHC---------------TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhC---------------CCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 4678999999998632 34444433332111 224789999999999999999997654
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-12 Score=99.13 Aligned_cols=86 Identities=20% Similarity=0.342 Sum_probs=55.5
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccC--CCCCcceeEEEeCC-----------------eEEEEEEcCCh
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQ--PTQYPTSEELSIGK-----------------IKFKAFDLGGH 74 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~~~-----------------~~~~~~D~~g~ 74 (193)
.......+|+++|.+|||||||+|++.+.... ... .|..++...+.+.+ ..+.+||+||.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence 34567889999999999999999999987643 222 25566666666543 35899999998
Q ss_pred hhhHH-------hHHhhhccCCEEEEEEeCCCh
Q 029453 75 QMARR-------VWKDYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 75 ~~~~~-------~~~~~~~~~d~ii~v~d~~~~ 100 (193)
..... .+..+++.+|++++|+|+++.
T Consensus 97 ~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 97 VKGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp ----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred ccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 76443 455678899999999999753
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.19 E-value=3.1e-10 Score=90.52 Aligned_cols=162 Identities=18% Similarity=0.106 Sum_probs=90.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh------cCCccccCC-CCC---------------cceeE-----------------
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK------DERLVQHQP-TQY---------------PTSEE----------------- 58 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~------~~~~~~~~~-t~~---------------~~~~~----------------- 58 (193)
.+...|+++|++||||||+++.+. +.+..-... +.. .....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999997 433210000 000 00000
Q ss_pred EEeCCeEEEEEEcCChhhh----HHhHHhh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcE-EEEeeCC
Q 029453 59 LSIGKIKFKAFDLGGHQMA----RRVWKDY--YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPF-LILGNKI 131 (193)
Q Consensus 59 ~~~~~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~ 131 (193)
....+.++.++||||.... ....... .-.+|.+++|+|+..... .......+ .. ..|+ .+|+||+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~-~~----~~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAF-KD----KVDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHH-HH----HHCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHH-Hh----hcCceEEEEeCC
Confidence 0115678999999996422 1111111 126899999999987532 11222222 11 2565 8999999
Q ss_pred CCCCCCC-HHHHHHhhCCCc--cccCCCcccCCCCCCccEEEEEEeeecCCC-hhHHHHhhhhh
Q 029453 132 DIPYAAS-EDELRYHMGLTN--FTTGKGNVNLDNTNVRPLEVFMCSIVRKMG-YGEGFKWLSQY 191 (193)
Q Consensus 132 Dl~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~~~~~i~~~ 191 (193)
|...... .-.+...++.+. +........+ ....+...+|+..|.| +.++++++.+.
T Consensus 251 D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl----~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDF----EPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TSCCCCTHHHHHHHHHCCCEEEEECSSSTTCE----ECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccccchHHHHHHHHHhCCCeEEeccccchhhh----hccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 9874332 223444444432 1111111100 0112345689999999 99999998754
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.10 E-value=5.5e-10 Score=86.46 Aligned_cols=84 Identities=21% Similarity=0.336 Sum_probs=63.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCc-c-ccCC--CCCcceeEEEeCC-----------------eEEEEEEcCCh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERL-V-QHQP--TQYPTSEELSIGK-----------------IKFKAFDLGGH 74 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~-~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g~ 74 (193)
...+..+++++|++|||||||+|.+.+... . ...| |..++...+.+.+ ..+.+||+||.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 455678999999999999999999998764 2 3333 6677777777764 46899999994
Q ss_pred hh-------hHHhHHhhhccCCEEEEEEeCCC
Q 029453 75 QM-------ARRVWKDYYAKVDAVVYLIDAYD 99 (193)
Q Consensus 75 ~~-------~~~~~~~~~~~~d~ii~v~d~~~ 99 (193)
.. ....+...+..+|++++|+|+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 32 22344556788999999999863
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.4e-11 Score=90.50 Aligned_cols=96 Identities=18% Similarity=0.042 Sum_probs=69.7
Q ss_pred hhhhHHhHHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCCC
Q 029453 74 HQMARRVWKDYYAKVDAVVYLIDAYDKE-RFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGLT 149 (193)
Q Consensus 74 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~~ 149 (193)
++++..+...++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... .+++...+..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~- 140 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD- 140 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH-
Confidence 5555555566889999999999999885 77777777775543 4799999999999964321 1222222211
Q ss_pred ccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 150 NFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
...+++++||++|.|++++++.+..
T Consensus 141 ----------------~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 141 ----------------AGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp ----------------TTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred ----------------CCCeEEEEECCCCCCHHHHHhhccC
Confidence 1137899999999999999998865
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-09 Score=85.05 Aligned_cols=110 Identities=14% Similarity=0.166 Sum_probs=58.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcce--eEEEe--CC--eEEEEEEcCChhhh--------------
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQP---TQYPTS--EELSI--GK--IKFKAFDLGGHQMA-------------- 77 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~--~~~~~--~~--~~~~~~D~~g~~~~-------------- 77 (193)
++++|+|++|||||||+|.+++........ +..... ..+.. .+ ..+.++|++|....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 469999999999999999998875331111 111111 11111 12 26789999874311
Q ss_pred HHhHHhhh-------------cc--CCE-EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 78 RRVWKDYY-------------AK--VDA-VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 78 ~~~~~~~~-------------~~--~d~-ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
...+..++ .. +|+ +.++.|...+ +......+...+. .+.|+++|+||+|....
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLDLVTMKKLD----SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHHHHHHHHHh----hCCCEEEEEcchhccch
Confidence 11111111 11 233 5556666544 3333333333332 47899999999998643
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.3e-09 Score=78.37 Aligned_cols=109 Identities=20% Similarity=0.236 Sum_probs=60.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccC----------CCCCcceeEEEeC----CeEEEEEEcCChhh---------
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQ----------PTQYPTSEELSIG----KIKFKAFDLGGHQM--------- 76 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~----------~t~~~~~~~~~~~----~~~~~~~D~~g~~~--------- 76 (193)
.++++++|++|||||||+|.+++....... .+........-.. ...+.++|++|...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999864432110 0111111111111 13678999997321
Q ss_pred -hH--------HhHHhh----------hccCCEEEEEEeCC-ChhhHHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 77 -AR--------RVWKDY----------YAKVDAVVYLIDAY-DKERFSES-KRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 77 -~~--------~~~~~~----------~~~~d~ii~v~d~~-~~~~~~~~-~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
.. ...... +..+++.++++|.. .+ +... ...+..+ .. ..++++|+||+|...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~g--L~~lD~~~l~~L-~~----~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHS--LRPLDLEFMKHL-SK----VVNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSS--CCHHHHHHHHHH-HT----TSEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCc--CCHHHHHHHHHH-Hh----cCcEEEEEeccccCC
Confidence 00 001111 11368889999965 22 2222 2333333 32 289999999999864
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.93 E-value=9e-10 Score=81.93 Aligned_cols=100 Identities=21% Similarity=0.175 Sum_probs=66.1
Q ss_pred EEEcCChh-hhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhh
Q 029453 68 AFDLGGHQ-MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHM 146 (193)
Q Consensus 68 ~~D~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~ 146 (193)
+-..|||. +........+..+|+++.|+|+.++.+... ..+..++ .++|+++|+||+|+.+....+.+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 34578986 455666778899999999999998754431 1233332 479999999999997532223344443
Q ss_pred CCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 147 GLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
... ..+++.+||+++.|++++++.+.+.
T Consensus 76 ~~~-----------------g~~~i~iSA~~~~gi~~L~~~i~~~ 103 (282)
T 1puj_A 76 ENQ-----------------GIRSLSINSVNGQGLNQIVPASKEI 103 (282)
T ss_dssp HTT-----------------TCCEEECCTTTCTTGGGHHHHHHHH
T ss_pred Hhc-----------------CCcEEEEECCCcccHHHHHHHHHHH
Confidence 211 1367899999999999999987654
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.8e-09 Score=81.29 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=85.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCC-CC-C----cceeEEEeCC-eEEEEEEcCChhhh----HHhHH-hhhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-TQ-Y----PTSEELSIGK-IKFKAFDLGGHQMA----RRVWK-DYYA 86 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-t~-~----~~~~~~~~~~-~~~~~~D~~g~~~~----~~~~~-~~~~ 86 (193)
....++++|++|||||||+|.+.+-....... +. + .......... ..+.++|++|.... ..... ..+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 45589999999999999999998744321110 00 0 0111112222 25789999985421 11111 1233
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC---------CCCCHHHHHHhhCCCcccc-CCC
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP---------YAASEDELRYHMGLTNFTT-GKG 156 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~---------~~~~~~~~~~~~~~~~~~~-~~~ 156 (193)
..+..++ ++...+. ..-......+.. .+.|+++|.||.|+. ......++.+.+....... ...
T Consensus 148 ~~~~~~~-lS~G~~~--kqrv~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 148 EYDFFII-ISATRFK--KNDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp GCSEEEE-EESSCCC--HHHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCeEE-eCCCCcc--HHHHHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4465555 7776321 111222233332 368999999999963 2223333333322211000 000
Q ss_pred cccCCCCCCccEEEEEEee--ecCCChhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPLEVFMCSI--VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa--~~~~gi~~~~~~i~~~l 192 (193)
......++.+|+ .++.|++++.+.|.+.+
T Consensus 221 -------g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 221 -------GIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp -------TCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred -------CCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 001236788999 66677999999887654
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-10 Score=88.97 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=70.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC-----Ccc--ccCCCCCcceeEEEeCCeEEEEEEcCChhhhH--------HhHHhh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE-----RLV--QHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR--------RVWKDY 84 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~-----~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~ 84 (193)
..+++++|.+|+|||||+|.+.+. ... ...+...........+. .+.++||||..... .....+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES-GATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST-TCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC-CeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 458999999999999999999875 222 22222222222333332 37899999943211 112222
Q ss_pred h--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHHhhCC
Q 029453 85 Y--AKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS----EDELRYHMGL 148 (193)
Q Consensus 85 ~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~----~~~~~~~~~~ 148 (193)
+ +..+.++++++....-.+.++.. +......+.|+++++||.|...... .+.+.+.++.
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~ 305 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGE 305 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT
T ss_pred hcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCC
Confidence 2 56899999999842210111111 1111224689999999999863222 2235555554
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.3e-09 Score=80.22 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=66.3
Q ss_pred ChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHhhCCCcc
Q 029453 73 GHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA-SEDELRYHMGLTNF 151 (193)
Q Consensus 73 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~-~~~~~~~~~~~~~~ 151 (193)
.++.|.+.+..+.+.++++++|+|++++. ......+..++ .++|+++|+||+|+.+.. ..+++.+.+....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~- 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSA- 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHH-
Confidence 45788888888888999999999999863 22222233332 378999999999997543 2222222111100
Q ss_pred ccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 152 TTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
.. ......+++.+||++|.|+++++++|.+
T Consensus 127 ~~---------~g~~~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 127 KQ---------LGLKPEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp HH---------TTCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HH---------cCCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence 00 0001237899999999999999999865
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.7e-10 Score=85.01 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=63.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC------cc--ccCCCCCcceeEEEeCCeEEEEEEcCChhhhH--------HhHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER------LV--QHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR--------RVWKD 83 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~------~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~ 83 (193)
..+++++|.+|+|||||+|.+.+.. .. ...+........+.... .+.++||||..... .....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~~ 238 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE-ESSLYDTPGIINHHQMAHYVGKQSLKL 238 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS-SCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC-CeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence 4689999999999999999998752 11 11221112222333332 37899999953211 11122
Q ss_pred h--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 84 Y--YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 84 ~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
+ .+..+..+++++....-.+.++.. +......+.|+++++||+|....
T Consensus 239 ~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 239 ITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEE
T ss_pred hccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCcccccc
Confidence 2 246788999998842210111110 11111246899999999998743
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.77 E-value=3.8e-09 Score=82.97 Aligned_cols=160 Identities=18% Similarity=0.136 Sum_probs=87.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC------Ccc--c---c----------------------C-CCCCcc-e--eEE-Ee
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE------RLV--Q---H----------------------Q-PTQYPT-S--EEL-SI 61 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~------~~~--~---~----------------------~-~t~~~~-~--~~~-~~ 61 (193)
...|+++|++||||||+++.+... +.. . . . .+..+. . ..+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998642 110 0 0 0 111110 0 000 01
Q ss_pred CCeEEEEEEcCChhhhHH----hHHhh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCC-c-EEEEeeCCCC
Q 029453 62 GKIKFKAFDLGGHQMARR----VWKDY--YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADV-P-FLILGNKIDI 133 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-viiv~nK~Dl 133 (193)
.+.++.++||||...... ..... ...+|.+++|+|+.... ........+ . ... | ..+|+||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~-~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAF-K----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence 567899999999543211 11111 12589999999997653 222222222 2 134 5 8899999998
Q ss_pred CCCCC-HHHHHHhhCCCcc--ccCCCcccCCCCCCccEEEEEEeeecCCC-hhHHHHhhhhh
Q 029453 134 PYAAS-EDELRYHMGLTNF--TTGKGNVNLDNTNVRPLEVFMCSIVRKMG-YGEGFKWLSQY 191 (193)
Q Consensus 134 ~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~~~~~i~~~ 191 (193)
..... .-.+....+.+.. ..+..... .....+...+|+..|.| +..+++.+.+.
T Consensus 251 ~~~~g~~l~~~~~~~~pi~~ig~Ge~~~d----l~~f~~~~~~s~l~g~gdi~~L~e~~~~~ 308 (432)
T 2v3c_C 251 SAKGGGALSAVAETKAPIKFIGIGEGIDD----LEPFDPKKFISRLLGMGDLESLLEKAEDM 308 (432)
T ss_dssp CSTTHHHHHHHHHSSCCEEEECCSSSSSS----CCBCCHHHHHHHHTCSSCSSTTSSTTTSC
T ss_pred ccchHHHHHHHHHHCCCEEEeecCccccc----cccCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 63221 2234444443321 11111111 11223445788999999 88888877654
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-08 Score=79.13 Aligned_cols=102 Identities=20% Similarity=0.257 Sum_probs=66.6
Q ss_pred ChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCcc
Q 029453 73 GHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNF 151 (193)
Q Consensus 73 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~ 151 (193)
.++.|.+...++.+.++++++|+|++++.+ .....+...+ .+.|+++|+||+|+.+... .+.+.+.+....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~- 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMA- 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHH-
Confidence 477888888888899999999999998752 2222222332 3789999999999975432 222222211100
Q ss_pred ccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 152 TTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+. ......+++.+||++|.|++++++.|.+.
T Consensus 129 ~~---------~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 129 EE---------LGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp HT---------TTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HH---------cCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 00 00112478999999999999999998653
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.63 E-value=5e-08 Score=72.54 Aligned_cols=56 Identities=20% Similarity=0.330 Sum_probs=37.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----CCCcceeEEEeCCeEEEEEEcCChh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~ 75 (193)
....++++++|.+|+|||||+|++.+.....+.+ |...+ .+.. +..+.++||||..
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEE-TTTEEEEECCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEe-CCCEEEEECcCcC
Confidence 4567899999999999999999999877543322 22222 2333 3368899999953
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1e-08 Score=75.47 Aligned_cols=54 Identities=28% Similarity=0.374 Sum_probs=34.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc--eeEEEeCCeEEEEEEcCChh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPT--SEELSIGKIKFKAFDLGGHQ 75 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~ 75 (193)
++++++|.+|+|||||+|++.+.......++.+.+ ...+.. +..+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCcc
Confidence 69999999999999999999987764433322211 122232 3467899999954
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.59 E-value=5.8e-08 Score=79.52 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-..++|+|++|||||||++.+.+-.
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CCeEEEECCCCChHHHHHHHHhCCC
Confidence 3469999999999999999998764
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.54 E-value=9.6e-07 Score=69.29 Aligned_cols=109 Identities=20% Similarity=0.167 Sum_probs=62.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc------CCcc-ccCCCCCc-------------ceeEE-------------------
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD------ERLV-QHQPTQYP-------------TSEEL------------------- 59 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~------~~~~-~~~~t~~~-------------~~~~~------------------- 59 (193)
+...|+++|++||||||++..+.. .+.. ....+..+ ....+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999998852 2211 00000000 00000
Q ss_pred EeCCeEEEEEEcCChhhh----HHhHH--hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q 029453 60 SIGKIKFKAFDLGGHQMA----RRVWK--DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDI 133 (193)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~----~~~~~--~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl 133 (193)
...+.++.++||+|.... ..... .....+|.+++|+|+...... ......+... -.+..+|+||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh----CCCeEEEEECCCC
Confidence 013478999999993211 11111 112357999999999875322 2223333221 2456789999998
Q ss_pred C
Q 029453 134 P 134 (193)
Q Consensus 134 ~ 134 (193)
.
T Consensus 252 ~ 252 (443)
T 3dm5_A 252 S 252 (443)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-08 Score=75.30 Aligned_cols=94 Identities=21% Similarity=0.074 Sum_probs=59.6
Q ss_pred cCChhhh-HHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCC
Q 029453 71 LGGHQMA-RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLT 149 (193)
Q Consensus 71 ~~g~~~~-~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~ 149 (193)
.|||... .......+.++|+++.|+|+.++.+.... .+. ++ ++|.++|+||+|+.+....+++.+.+...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~l~-ll------~k~~iivlNK~DL~~~~~~~~~~~~~~~~ 74 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--GVD-FS------RKETIILLNKVDIADEKTTKKWVEFFKKQ 74 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--TSC-CT------TSEEEEEEECGGGSCHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--HHH-hc------CCCcEEEEECccCCCHHHHHHHHHHHHHc
Confidence 5777632 33556678999999999999987543221 111 11 78999999999997532223333333211
Q ss_pred ccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 150 NFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
..++ .+||+++.|+++++++|.+.
T Consensus 75 -----------------g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 75 -----------------GKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp -----------------TCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred -----------------CCeE-EEECCCCcCHHHHHHHHHHh
Confidence 1245 89999999999999988664
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.5e-07 Score=74.25 Aligned_cols=60 Identities=20% Similarity=0.144 Sum_probs=42.1
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCC-CCcceeEEE-------eCCeEEEEEEcCChh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPT-QYPTSEELS-------IGKIKFKAFDLGGHQ 75 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t-~~~~~~~~~-------~~~~~~~~~D~~g~~ 75 (193)
...+..+|+|+|.+|+|||||+|++.+.... ....| ...+..... ..+..+.++||||..
T Consensus 34 i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 34 ITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 3567789999999999999999999987643 22222 233333322 245789999999954
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.25 E-value=4.4e-07 Score=68.03 Aligned_cols=87 Identities=13% Similarity=0.084 Sum_probs=56.4
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHHhhCCCccccCCCcc
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS----EDELRYHMGLTNFTTGKGNV 158 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~ 158 (193)
....++|.+++|+|+.++..-......+...... .++|.++|+||+||.+... .+++.+.+...
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~--------- 149 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI--------- 149 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC---------
Confidence 3578899999999998764333222222222222 4789999999999975432 23344433211
Q ss_pred cCCCCCCccEEEEEEeeecCCChhHHHHhhh
Q 029453 159 NLDNTNVRPLEVFMCSIVRKMGYGEGFKWLS 189 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 189 (193)
..+++.+||.++.|++++++.+.
T Consensus 150 --------g~~v~~~sa~~~~g~~~L~~~~~ 172 (307)
T 1t9h_A 150 --------GYDVYLTSSKDQDSLADIIPHFQ 172 (307)
T ss_dssp --------TCCEEECCHHHHTTCTTTGGGGT
T ss_pred --------CCeEEEEecCCCCCHHHHHhhcC
Confidence 13678899999999988887654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.16 E-value=3.4e-06 Score=66.14 Aligned_cols=109 Identities=18% Similarity=0.114 Sum_probs=61.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh------cCCccc-cCCCC---------------Cccee-----------------EE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK------DERLVQ-HQPTQ---------------YPTSE-----------------EL 59 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~------~~~~~~-~~~t~---------------~~~~~-----------------~~ 59 (193)
+...|+++|++||||||++..+. +.+..- ...+. +.... ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35688999999999999999885 221100 00000 00000 00
Q ss_pred EeCCeEEEEEEcCChhh------hHHhHHhh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCC
Q 029453 60 SIGKIKFKAFDLGGHQM------ARRVWKDY--YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKI 131 (193)
Q Consensus 60 ~~~~~~~~~~D~~g~~~------~~~~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~ 131 (193)
...+.++.++||||... ........ .-.++.+++|+|+............+... -.+..+++||.
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEecc
Confidence 01257888999999432 11111111 12468999999998753322222222222 24578899999
Q ss_pred CCC
Q 029453 132 DIP 134 (193)
Q Consensus 132 Dl~ 134 (193)
|..
T Consensus 249 D~~ 251 (433)
T 3kl4_A 249 DGT 251 (433)
T ss_dssp GGC
T ss_pred ccc
Confidence 985
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.98 E-value=4.8e-05 Score=56.85 Aligned_cols=65 Identities=18% Similarity=0.106 Sum_probs=40.2
Q ss_pred CCeEEEEEEcCChhh--hHH-hHH-----hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCC
Q 029453 62 GKIKFKAFDLGGHQM--ARR-VWK-----DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKID 132 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D 132 (193)
.+.++.++||||... ... ... .....+|.+++|+|+.... ........+. . ..| ..+|+||+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~-~----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFN-Q----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHH-H----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHH-h----hCCCCEEEEeCCC
Confidence 457899999999655 221 111 1234689999999987542 2222233332 1 345 678899999
Q ss_pred CC
Q 029453 133 IP 134 (193)
Q Consensus 133 l~ 134 (193)
..
T Consensus 251 ~~ 252 (297)
T 1j8m_F 251 GT 252 (297)
T ss_dssp GC
T ss_pred CC
Confidence 75
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00021 Score=56.24 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=23.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..+-.-|+|+|++++|||+|+|.+++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 456678999999999999999999863
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.77 E-value=3.5e-05 Score=58.91 Aligned_cols=83 Identities=23% Similarity=0.077 Sum_probs=50.8
Q ss_pred hccCCEEEEEEeCCChhhH-HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhCCCccccCCCcccC
Q 029453 85 YAKVDAVVYLIDAYDKERF-SESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
..++|.+++|... +|..- ..+..++...-. .++|.++|+||+||.+... .+++...+...
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~----------- 191 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNI----------- 191 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTT-----------
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhC-----------
Confidence 5689999987554 45322 223333322211 3788899999999975432 11233332211
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhh
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLS 189 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 189 (193)
..+++.+||.++.|++++...+.
T Consensus 192 ------G~~v~~~Sa~~~~gl~~L~~~~~ 214 (358)
T 2rcn_A 192 ------GYRVLMVSSHTQDGLKPLEEALT 214 (358)
T ss_dssp ------TCCEEECBTTTTBTHHHHHHHHT
T ss_pred ------CCcEEEEecCCCcCHHHHHHhcC
Confidence 13588999999999999887653
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.75 E-value=1.6e-05 Score=54.87 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+++++|++|||||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998654
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.74 E-value=7e-05 Score=58.87 Aligned_cols=122 Identities=17% Similarity=0.191 Sum_probs=66.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh-------cCCcc-----ccCCCC-----------C---------ccee--------E
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK-------DERLV-----QHQPTQ-----------Y---------PTSE--------E 58 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~-------~~~~~-----~~~~t~-----------~---------~~~~--------~ 58 (193)
+...|+++|.+|+||||++..+. +.+.. ...+.. + .... .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999998885 22211 000000 0 0000 0
Q ss_pred EEeCCeEEEEEEcCChhhhH-HhHH-----hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCC
Q 029453 59 LSIGKIKFKAFDLGGHQMAR-RVWK-----DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKI 131 (193)
Q Consensus 59 ~~~~~~~~~~~D~~g~~~~~-~~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~ 131 (193)
....++++.++||||..... .... ...-.++.+++|+|+...... ......+-. ..+ .-+|+||+
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~-----~l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE-----ALPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH-----HSCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc-----cCCCeEEEEecC
Confidence 11146789999999954321 1111 123468999999999755322 222222211 233 34689999
Q ss_pred CCCCCC-CHHHHHHhhCC
Q 029453 132 DIPYAA-SEDELRYHMGL 148 (193)
Q Consensus 132 Dl~~~~-~~~~~~~~~~~ 148 (193)
|..... ....+....+.
T Consensus 251 D~~~~~g~~l~i~~~~~~ 268 (433)
T 2xxa_A 251 DGDARGGAALSIRHITGK 268 (433)
T ss_dssp TSSSCCTHHHHHHHHHCC
T ss_pred CCCccHHHHHHHHHHHCC
Confidence 986332 22234444443
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=97.73 E-value=4.7e-06 Score=66.26 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=48.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce----eEEEeCCeEEEEEEcCChhh--hHHhH--------H
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTS----EELSIGKIKFKAFDLGGHQM--ARRVW--------K 82 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~D~~g~~~--~~~~~--------~ 82 (193)
...+..|+++|.+||||||+.+++.........++..... ...........+||..|.+. ....+ .
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3466799999999999999999986432111111111000 00000112335788888732 22222 3
Q ss_pred hhhccCCEEEEEEeCCChh
Q 029453 83 DYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~ 101 (193)
.++....+.++|+|.++..
T Consensus 116 ~~l~~~~G~~vV~D~tn~~ 134 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTT 134 (469)
T ss_dssp HHHHTTCCSEEEEESCCCS
T ss_pred HHHHhCCCCEEEEeCCCCC
Confidence 4455567888999999873
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=6.3e-05 Score=54.26 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.=.++++|++|||||||++.+.+-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3368999999999999999998754
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=3.2e-05 Score=53.36 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
-.++++|++|||||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999764
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=3.2e-05 Score=54.29 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
-.++|+|++|||||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999875
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.60 E-value=9.6e-05 Score=52.15 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=23.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..+...|+|+|++|||||||++.+.+-
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356779999999999999999998653
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.59 E-value=8.8e-05 Score=53.10 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00011 Score=53.25 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0001 Score=54.44 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00011 Score=53.86 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.54 E-value=4.1e-05 Score=54.00 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=21.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.+.--++++|++|||||||++.+.+-.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344578999999999999999987643
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.54 E-value=4.2e-05 Score=53.61 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.--++++|++||||||+++.+.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999998764
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=4.5e-05 Score=52.18 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 029453 21 AKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~ 41 (193)
--++++|++|||||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 368999999999999999754
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00013 Score=53.39 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||++.+.+-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998754
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.50 E-value=6.9e-05 Score=51.92 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.+.-.++++|++||||||+++.+.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34557999999999999999999875
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00013 Score=52.71 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00018 Score=51.14 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.++++|++|||||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.49 E-value=5.3e-05 Score=53.98 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+.-.++|+|++|||||||++.+.+.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4457899999999999999998764
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00019 Score=52.19 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00013 Score=53.44 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.=.++++|++|||||||++.+.+-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3468999999999999999998754
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=6.3e-05 Score=53.69 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.--++|+||+|||||||++.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3478999999999999999987643
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00015 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 368999999999999999998754
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0002 Score=54.73 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=-++++|++|||||||++.+.+-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 368999999999999999998754
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=7.4e-05 Score=52.70 Aligned_cols=25 Identities=40% Similarity=0.313 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+...|+++|++||||||+++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999999865
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00021 Score=52.22 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.=.++++|++|||||||++.+.+-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3368999999999999999998754
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.43 E-value=7.5e-05 Score=50.47 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=22.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.+.-.++++|+.|||||||++.+.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344479999999999999999998755
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00026 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-.++|+|++|||||||++.+.+-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00021 Score=52.51 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999998754
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00011 Score=51.54 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+++|++||||||+++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00011 Score=53.15 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||++.+.+-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999998754
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00014 Score=49.94 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 5 DWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..+..+..+... .+.-.+++.|++|+|||||++.+.+.
T Consensus 24 ~~~~~~~~~~~~-~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 24 LTIRVFVHNFNP-EEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHSCCG-GGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 344444443322 23567999999999999999998653
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00014 Score=54.53 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++|||||||++.+.+-.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 3479999999999999999988643
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00035 Score=53.82 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0001 Score=51.60 Aligned_cols=25 Identities=12% Similarity=0.395 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+.--|+|+||+|||||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4457899999999999999999754
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00013 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+...|+|+|++||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999998
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00026 Score=54.24 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=-++++|++|||||||++.+.+-.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 368999999999999999998754
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00012 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||++.+.+-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999997654
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=50.12 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..|+++|++||||||+++.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0001 Score=52.01 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.--|+++||+||||||+++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 44569999999999999999997653
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00012 Score=52.55 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00013 Score=51.07 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+...++++|++||||||+++.+.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34579999999999999999987644
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0001 Score=52.20 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.-.++++|++|||||||++.+.+-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999875
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00029 Score=54.28 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=-++++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 368999999999999999998754
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0003 Score=53.78 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999998754
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0003 Score=53.85 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 368999999999999999998754
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00013 Score=53.15 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
=.++++|++|||||||++.+.+-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999985
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00032 Score=53.80 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 368999999999999999998754
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00011 Score=51.09 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+++++|++|||||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998753
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00014 Score=52.88 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999998754
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00012 Score=50.61 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00014 Score=53.81 Aligned_cols=24 Identities=42% Similarity=0.679 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999998654
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00014 Score=53.24 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||++.+.+-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3478999999999999999998753
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00015 Score=53.24 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.=.++++|++|||||||++.+.+-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999985
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00016 Score=49.06 Aligned_cols=20 Identities=35% Similarity=0.605 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 029453 21 AKILFLGLDNSGKTTLLHML 40 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l 40 (193)
..|++.|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00017 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...|+++|++||||||+++.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999864
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00016 Score=55.31 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
-.++++|++|||||||+|.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4799999999999999999997654
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00037 Score=53.65 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 368999999999999999998754
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00017 Score=52.64 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.++++|++|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00023 Score=49.98 Aligned_cols=27 Identities=41% Similarity=0.374 Sum_probs=23.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..+...|+++|++||||||+++.+.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 445678999999999999999999764
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00018 Score=54.04 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=23.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+..-|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 45677999999999999999999865
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00045 Score=51.39 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=22.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
..+...|+|+|++|||||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999999999875
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00016 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+.-.++|+|++|||||||++.+.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3556899999999999999999864
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00018 Score=50.41 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+|+|+|++||||||+++.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00019 Score=51.95 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+|+|++||||||+++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 556899999999999999999865
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00032 Score=49.30 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
-.+++.||||+|||+++..+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999888754
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00055 Score=53.59 Aligned_cols=66 Identities=15% Similarity=0.036 Sum_probs=37.0
Q ss_pred CCeEEEEEEcCChhhhH-HhHH-----hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 62 GKIKFKAFDLGGHQMAR-RVWK-----DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~-~~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.++++.++||||..... .... ...-.++.+++|+|+... +........+... -...-+|+||.|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~----l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEK----VGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHH----TCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhc----CCceEEEEeCcCCc
Confidence 45689999999853221 1111 112258899999998644 2222233333211 11256788999975
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00028 Score=53.94 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999998754
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0002 Score=52.57 Aligned_cols=24 Identities=42% Similarity=0.610 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|++|||||||++.+.+-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00025 Score=49.60 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=22.8
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.......|++.|++||||||+.+.+..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345667899999999999999999853
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00022 Score=48.71 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+++|++||||||+++.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0024 Score=44.50 Aligned_cols=68 Identities=13% Similarity=0.027 Sum_probs=45.0
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCC-CCCCcEEEEeeCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEA-LADVPFLILGNKIDIP 134 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~pviiv~nK~Dl~ 134 (193)
.+++.++|+|+... ......+..+|.+++++..+... ......+..+..... ..+.++.+|+|++|..
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 47889999998652 23344566799999999886554 445454444432211 2356789999999964
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00021 Score=50.15 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.|+++|++||||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00029 Score=53.74 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 368999999999999999998754
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00018 Score=52.77 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=22.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+.-.++++|++||||||+++.+.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHH
Confidence 34555799999999999999999865
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0002 Score=50.34 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+..-|+++|++||||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999864
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00021 Score=48.48 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|++.|++||||||+++.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00021 Score=49.63 Aligned_cols=21 Identities=43% Similarity=0.578 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
|+|+||+|||||||++.+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998643
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00019 Score=51.04 Aligned_cols=26 Identities=35% Similarity=0.307 Sum_probs=22.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+.--++|+|++|||||||++.+.+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999999976
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00012 Score=52.41 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=16.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh-cC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK-DE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~-~~ 43 (193)
+.--++|+|++||||||+++.+. +.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34478999999999999999998 54
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00026 Score=49.59 Aligned_cols=25 Identities=44% Similarity=0.534 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+...|+++|++||||||+++.+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999998864
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00026 Score=53.37 Aligned_cols=26 Identities=27% Similarity=0.120 Sum_probs=22.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+.+-|+|+|++|||||||++.+.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34667899999999999999998753
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00025 Score=52.80 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-.++++|+.|||||||++.+.+-.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 368999999999999999998754
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00029 Score=48.15 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..|++.|++||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00029 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+...|+++|++||||||+.+.+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 34589999999999999999986
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0003 Score=48.38 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~ 41 (193)
...|+++|++||||||+.+.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999986
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00027 Score=49.95 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
+|+|.|++||||||+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999984
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00029 Score=52.71 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
.-.++++|++|||||||+|.+.+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 34789999999999999999987654
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0003 Score=48.54 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...|+|.|++||||||+++.+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999854
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00021 Score=54.85 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-+++|+|++|||||||++.+.+-.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999987643
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00044 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+..-|.+.|++||||||+++.+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999864
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.10 E-value=8.9e-05 Score=55.57 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||+|.+.+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 34589999999999999999998754
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0003 Score=49.74 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
+|+|+|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999853
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00036 Score=48.15 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+...|+++|++||||||+.+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998654
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00031 Score=51.08 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=23.3
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....+...|+++|++||||||+.+.+..
T Consensus 27 ~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 27 KSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445667899999999999999999854
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00036 Score=49.54 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+|.|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998853
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0003 Score=49.21 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...|+++|++||||||+++.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00014 Score=49.80 Aligned_cols=52 Identities=17% Similarity=0.043 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
..++|+|++|||||||++.+.+-... .+.....+.+++..+.-+|.++...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~-----~g~~~G~I~~dg~~i~~~~~~~~d~~ 54 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE-----RGLRVAVVKRHAHGDFEIDKEGKDSW 54 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH-----TTCCEEEEEC------------CHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh-----cCCceEEEEEcCcccccCCccchhHH
Confidence 36899999999999999998763211 11124566666655444454454443
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00035 Score=52.41 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=22.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+...|+|+|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999999875
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00037 Score=48.21 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...|++.|++||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998753
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00039 Score=50.29 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.+..+|++.|++||||||+++.|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 467799999999999999999986
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00038 Score=48.11 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|++.|++||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00032 Score=48.13 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
...++++|++|||||||++.+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 357899999999999999998753
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0004 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.+...|+|+|++||||||+++.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 355689999999999999999997
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00033 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..|.+.|++||||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00038 Score=49.67 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=20.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.+...|+|.|++||||||+++.|.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999986
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00049 Score=47.44 Aligned_cols=27 Identities=37% Similarity=0.453 Sum_probs=22.9
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...+...|++.|++||||||+++.+..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345667899999999999999999854
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00039 Score=48.45 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|+|.|++||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999864
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00043 Score=48.51 Aligned_cols=26 Identities=35% Similarity=0.316 Sum_probs=22.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+...|+++|++||||||+++.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00041 Score=48.34 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=22.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.++...|+|+|++||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 456678999999999999999998763
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00033 Score=52.41 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||+|.+. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3478999999999999999998 54
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00044 Score=48.52 Aligned_cols=24 Identities=46% Similarity=0.674 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+|.|++||||||+++.+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00045 Score=47.53 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~ 41 (193)
...|+++|++||||||+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999985
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00043 Score=47.75 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|+|.|++||||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00049 Score=47.68 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+...|++.|++||||||+.+.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999885
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00049 Score=48.03 Aligned_cols=25 Identities=44% Similarity=0.574 Sum_probs=21.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+...|+|.|++||||||+++.+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998764
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00038 Score=53.90 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 368999999999999999998643
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0003 Score=47.01 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+.-.++++|++|+|||||++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4557999999999999999998763
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0005 Score=48.52 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
+|+++|+|||||+|...++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00051 Score=48.71 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+|.|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999853
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00052 Score=48.50 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
+|+|.|++||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999853
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00056 Score=48.10 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+|.|++||||||+++.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999863
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00047 Score=47.07 Aligned_cols=21 Identities=43% Similarity=0.718 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
+|+++|++||||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00055 Score=48.07 Aligned_cols=24 Identities=46% Similarity=0.625 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|++.|++||||||+++.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999863
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00043 Score=51.04 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
+++.|++|||||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999763
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0015 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+.+.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998864
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00059 Score=46.73 Aligned_cols=23 Identities=39% Similarity=0.371 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+...|++.|++||||||+++.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 45679999999999999999986
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00043 Score=52.99 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.++|+|++||||||+++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 899999999999999999864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0013 Score=53.75 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||++.+.+-.
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3479999999999999999998754
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00066 Score=50.82 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.-.++++|++||||||+++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 34589999999999999999986
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00055 Score=48.63 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+...|+|.|++||||||+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999985
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00065 Score=48.07 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+|.|++||||||+++.+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999865
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0005 Score=51.43 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.-.++++|++||||||+++.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 44579999999999999999985
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00064 Score=45.90 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
+|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00051 Score=52.06 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34479999999999999999998653
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00074 Score=47.16 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+...|+|.|++||||||+.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45579999999999999999886
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00074 Score=48.41 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=21.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+...|+|.|++||||||+.+.|..
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999999853
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00055 Score=52.54 Aligned_cols=26 Identities=42% Similarity=0.469 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++|+|++|||||||++.+.+-.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 44589999999999999999998643
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0011 Score=54.17 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34479999999999999999998654
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00076 Score=45.97 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...++++|++||||||++.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0007 Score=48.66 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.+.+.|+|.|++||||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999986
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00068 Score=47.06 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...|++.|++||||||+.+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00072 Score=49.10 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.+.|+|.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 557899999999999999998854
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00062 Score=49.37 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
-+++.|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998763
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0015 Score=53.54 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 34489999999999999999998644
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00084 Score=50.80 Aligned_cols=25 Identities=40% Similarity=0.659 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+.--++++|++||||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3566899999999999999999863
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00086 Score=45.89 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+++|++||||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999865
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00069 Score=52.18 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+.-.++|+|++||||||+++.+.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999865
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00071 Score=48.07 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.--++++|++|||||||++.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 44578999999999999999986
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00088 Score=47.70 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|+|.|++||||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00085 Score=46.31 Aligned_cols=21 Identities=48% Similarity=0.594 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0012 Score=53.91 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||++.+.+-.
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3479999999999999999987643
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00079 Score=49.00 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
-|+|+|++||||||+.+.+.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 57899999999999999985
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00069 Score=46.56 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|+++|++||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998853
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00061 Score=53.95 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.+.-.++|+|++|||||||++.+.+-
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 35668999999999999999998654
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0007 Score=48.45 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=22.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.+..-|+|.|+.||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 35568999999999999999998764
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0006 Score=46.69 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=16.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999863
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00098 Score=49.30 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.+.+.|+|.|++||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999986
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0008 Score=51.31 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.+.=+++++|++|||||||++.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355589999999999999999998754
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00073 Score=51.23 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
-.+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999998763
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00099 Score=46.42 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+.|+++|.+||||||+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999864
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0011 Score=45.60 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..|++.|++||||||+.+.+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998853
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.001 Score=48.61 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...|++.|++||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00092 Score=45.31 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|++.|++||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998853
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.001 Score=45.63 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
-.+|+|+.||||||+++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999853
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00081 Score=52.57 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=21.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+.=-++|+|++||||||+++.+.+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 3444799999999999999999875
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00085 Score=49.85 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=21.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+.--++|+|++|+|||||+..+.+
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 34455789999999999999998753
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00099 Score=53.84 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.=.++++|++|||||||++.+.+-.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44479999999999999999998754
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0009 Score=53.70 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++|+|++||||||+++.+.+--
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3459999999999999999987643
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0015 Score=46.40 Aligned_cols=21 Identities=38% Similarity=0.363 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
-|.++|+|||||+|.+..|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 466789999999999998863
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00038 Score=49.00 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
-|+|.|++||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0012 Score=44.69 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998853
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00094 Score=49.16 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
-++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999998763
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.001 Score=53.69 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=24.4
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+...+.=-++++|+.|||||||++.+.+-.
T Consensus 20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 20 PTPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344455578999999999999999998754
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0008 Score=50.68 Aligned_cols=24 Identities=42% Similarity=0.570 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-++|+|+.|||||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 467899999999999999998653
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00097 Score=48.48 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.-.|+++|++||||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999854
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.001 Score=52.88 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
-.++|+|++|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5689999999999999999863
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.001 Score=52.93 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.-.++|+|++||||||+++.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHH
Confidence 45579999999999999999985
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0013 Score=50.37 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.-.++++|++||||||+++.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHH
Confidence 44579999999999999999985
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0016 Score=44.49 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..-.+.+.|++|+|||++++.+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999988643
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0014 Score=46.92 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=19.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
...+++++|++||||||+...+.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 46799999999999999999885
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0012 Score=52.02 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=23.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
..+.=+++|+|++|||||||++.+.+..
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3455689999999999999999998754
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0011 Score=54.20 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.=.++++|++|||||||++.+.+-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34479999999999999999998754
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0012 Score=46.57 Aligned_cols=26 Identities=27% Similarity=0.125 Sum_probs=22.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+.--++++|++|+|||||+..+..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44556799999999999999999976
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0012 Score=47.31 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+.--++++|++|||||||+..+.+
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 34556789999999999999999886
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0016 Score=46.79 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=21.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.+...|+++|++||||||+.+.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.035 Score=43.59 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....--|.+.||||+|||++++.+.+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34566899999999999999999875
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.002 Score=46.15 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=21.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+..-|+|.|++||||||+++.+..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999999864
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0018 Score=52.86 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-.++++|++|||||||++.+.+-.
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3479999999999999999987644
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0014 Score=47.56 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...+++.|++|+|||++++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 44699999999999999999865
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0018 Score=45.54 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=21.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+...|++.|++||||||+++.+..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999998854
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=53.46 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.=.++++|++|||||||++.+.+-.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 44579999999999999999998754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0017 Score=52.50 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
.=.++|+|+.|||||||++.+.+-..
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34789999999999999999987543
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0017 Score=52.47 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.++++|++|||||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0027 Score=45.12 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..-.+++.|++|+|||++++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0016 Score=50.24 Aligned_cols=25 Identities=44% Similarity=0.457 Sum_probs=21.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+.-.++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3455899999999999999999875
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0063 Score=44.51 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 4 VDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..|+..|+... ..+.-.+++.||||+|||.|+..+..
T Consensus 90 ~~~l~~~l~~~--~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKK--FGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTC--STTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCC--CCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 45666665432 12334599999999999999999875
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0011 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=17.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.+.|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 556799999999999999998753
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0016 Score=58.01 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.=+|+|+|++|||||||++.+.+-.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 34589999999999999999997643
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.002 Score=52.79 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
=.++++|+.|||||||++.+.+-..
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999987543
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0018 Score=44.05 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.....+.+.|++|+|||++++.+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 3455789999999999999998864
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0023 Score=42.56 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
-.+|+|+.|+||||++..+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999974
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.033 Score=43.66 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...--+++.||||+|||++++.+.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445699999999999999999875
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.002 Score=47.48 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.--++|+|++|||||||+..+.+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 444789999999999999999864
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0023 Score=47.55 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..|.+.|++||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0028 Score=47.05 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=20.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....-+++.|+||+|||++++.+..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445677789999999999999864
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0022 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
.++++|++|||||||++.+.+-..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 379999999999999999987553
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0026 Score=44.33 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|+|.|++||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999854
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0099 Score=46.78 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.1
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
..+-.-|+|+|+.++|||+|+|.++
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 4566788899999999999999654
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0027 Score=41.94 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=22.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.....|.+.|++|+|||++++.+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 45567999999999999999998653
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.13 Score=38.57 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..-.+.+.|++|+|||++++.+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 345799999999999999999875
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0078 Score=45.90 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
...+|+++|++||||||+.+.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 45689999999999999998764
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0064 Score=45.20 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998864
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0049 Score=47.23 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.++|.|++|+||||+++.+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999875
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0028 Score=48.69 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
-.+|+|+.||||||+++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35699999999999999975
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0031 Score=46.72 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....+++.|++|+|||++++.+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 456899999999999999999875
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.045 Score=42.94 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....--|.+.||||+|||++++.+.+
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 34556899999999999999999875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0057 Score=54.58 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccc
Confidence 34489999999999999999988643
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0035 Score=46.11 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.....+.+.|++|+|||++++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 44557999999999999999998753
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.056 Score=41.94 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=22.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....--|.+.||||+|||++++.+.+
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 34456799999999999999999975
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0089 Score=44.73 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...+.+.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998764
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0038 Score=45.19 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....+.+.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445699999999999999999865
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0034 Score=43.88 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+.+.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998864
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0034 Score=44.94 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=19.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.+.--+++.|++|+|||||+.++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 344578999999999999988774
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0067 Score=53.98 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.-+++++|++|||||||++.+.+-.
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999987643
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.003 Score=48.22 Aligned_cols=27 Identities=33% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..+.--+.|+|++|||||||+..+.+.
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345567899999999999999998754
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0054 Score=43.39 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.++|.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.003 Score=47.07 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...-.+++.|++|+|||++++.+.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 3455799999999999999999875
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.071 Score=41.73 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=22.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....--|.+.||||+|||++++.+.+
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHHHHHH
Confidence 34456799999999999999999975
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.033 Score=42.92 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
....++|.|++|+|||++++.+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998653
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0034 Score=53.99 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
=.++++|+.|||||||++.+.++..
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3689999999999999999986543
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0033 Score=44.35 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...|++.|++||||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0039 Score=46.45 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.-.++++|++||||||++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45589999999999999999874
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0048 Score=45.88 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.....+.|.|++|+|||++++.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 345579999999999999998664
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0033 Score=47.23 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.-.+.+.|++|+|||++++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35699999999999999999875
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0046 Score=46.51 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.2
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...+...+.+.|+||+|||++++.+..
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 355777999999999999999999864
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0089 Score=45.74 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...-.+.|.|++|+|||++++.+..
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3445899999999999999999865
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.00043 Score=49.58 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
++|+|++|||||||++.+.+-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 478899999999999998753
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0049 Score=46.22 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..-|+|+||+|||||+|...+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 446899999999999999998643
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0041 Score=47.17 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..|+|.|++|||||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999999998753
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0047 Score=43.17 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
...|+|+|++|+|||+++..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999998753
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.005 Score=46.10 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.-.++++|++||||||++..+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHH
Confidence 34468999999999999999875
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.004 Score=48.67 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...-|+++|++||||||+.+++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999875
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0032 Score=47.81 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.++|.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998866
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.056 Score=42.69 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.6
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....--|++.||||+|||+|++.+.+
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 44666899999999999999999875
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0027 Score=51.42 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..+...++++|++||||||+++.+.+.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHh
Confidence 446678999999999999999998753
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0023 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.646 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++|+|+.|||||||++.+.+-.
T Consensus 700 eivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998653
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0062 Score=44.51 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
......+.+.|++|+|||++++.+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 34566899999999999999999875
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0042 Score=47.43 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=21.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...-.++|.|++|+||||+++.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999999875
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0042 Score=47.02 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.++|.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998653
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0032 Score=45.94 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=21.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
++...|+|.|..||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999988643
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0058 Score=46.02 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..|+|+|++||||||+...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.003 Score=41.64 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
....|.+.|++|+|||++++.+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHh
Confidence 3457999999999999999987653
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0052 Score=46.96 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=21.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...-.+.|.|++|+|||++++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999864
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0045 Score=49.85 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHH--Hhc
Q 029453 23 ILFLGLDNSGKTTLLHM--LKD 42 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~--l~~ 42 (193)
++++|++|||||||++. +.+
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~G 63 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNG 63 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0065 Score=43.63 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
...|++-|..||||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999998643
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0053 Score=45.51 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....+.+.|++|+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0062 Score=41.86 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
+.|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999854
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.011 Score=47.86 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...++++|++|+||||+++.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 566899999999999999999864
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0064 Score=42.61 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
-.+|+|+.|+||||++..+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45789999999999999873
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.006 Score=47.42 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=21.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
..+.--++|+|++|||||||+..+.
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 3455579999999999999999774
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=95.69 E-value=0.008 Score=45.17 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....+.+.|++|+|||++++.+..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999999865
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 193 | ||||
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 5e-35 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-26 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 3e-26 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 2e-25 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 5e-25 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 6e-23 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 9e-23 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-22 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 5e-20 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 4e-19 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 6e-17 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 9e-17 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 3e-15 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 4e-14 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 6e-14 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 5e-12 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 1e-11 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 2e-11 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 4e-11 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 8e-11 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 4e-10 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 9e-10 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 4e-09 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 5e-09 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 5e-09 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 5e-09 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 8e-09 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 2e-08 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 2e-08 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 3e-08 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 5e-08 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 5e-08 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 1e-07 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 2e-07 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 9e-07 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 1e-06 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 2e-06 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 5e-06 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 5e-06 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 9e-06 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 2e-05 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 2e-05 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 2e-05 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 3e-05 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 3e-05 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 6e-05 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 7e-05 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 1e-04 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 2e-04 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 2e-04 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 3e-04 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 5e-04 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 7e-04 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 0.001 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 0.002 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 0.004 |
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 119 bits (299), Expect = 5e-35
Identities = 111/183 (60%), Positives = 142/183 (77%)
Query: 10 ILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAF 69
+L LGL++K K++FLGLDN+GKTTLLHMLKD+RL QH PT +PTSEEL+I + F F
Sbjct: 3 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF 62
Query: 70 DLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGN 129
DLGGH ARRVWK+Y ++ +V+L+D D ER ESK ELD+L++DE +A+VP LILGN
Sbjct: 63 DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGN 122
Query: 130 KIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLS 189
KID P A SE+ LR GL TTGKG+V+L N RPLEVFMCS++++ GYGEGF+W++
Sbjct: 123 KIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 182
Query: 190 QYI 192
QYI
Sbjct: 183 QYI 185
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 97.3 bits (241), Expect = 2e-26
Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 12/185 (6%)
Query: 9 GILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKA 68
G ++S KE +IL LGLD +GKTT+L+ LK + V PT E ++ +KF
Sbjct: 1 GKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNV 60
Query: 69 FDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILG 128
+D+GG R +W+ YY +++++D D++R E+++EL +++D + D LI
Sbjct: 61 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 120
Query: 129 NKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWL 188
NK D+P A E++ +GLT R V G EG WL
Sbjct: 121 NKQDLPDAMKPHEIQEKLGLTRIRD------------RNWYVQPSCATSGDGLYEGLTWL 168
Query: 189 SQYIK 193
+ K
Sbjct: 169 TSNYK 173
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 97.4 bits (241), Expect = 3e-26
Identities = 63/188 (33%), Positives = 90/188 (47%), Gaps = 12/188 (6%)
Query: 6 WFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIK 65
F + L KE +IL LGLD +GKTT+L+ L+ +V +PT E LS +K
Sbjct: 3 IFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLK 62
Query: 66 FKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFL 125
+DLGG R W+ YYA AV++++D+ DK+R S + +EL +L +E L D L
Sbjct: 63 LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALL 122
Query: 126 ILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGF 185
+ NK D P A S E+ + L R + S ++ G EG
Sbjct: 123 VFANKQDQPGALSASEVSKELNLVELKD------------RSWSIVASSAIKGEGITEGL 170
Query: 186 KWLSQYIK 193
WL IK
Sbjct: 171 DWLIDVIK 178
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 94.8 bits (234), Expect = 2e-25
Identities = 103/170 (60%), Positives = 126/170 (74%), Gaps = 5/170 (2%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81
K+LFLGLDN+GKTTLLHMLK++RL QPT +PTSEEL+IG IKF FDLGGH ARR+W
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 61
Query: 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE 141
KDY+ +V+ +V+L+DA D ERF E++ ELDAL + L DVPF+ILGNKID P A SE E
Sbjct: 62 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 121
Query: 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191
LR +GL N T + RP+EVFMCS+V + GY E F+WLSQY
Sbjct: 122 LRSALGLLNTTGSQR-----IEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 166
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 93.5 bits (231), Expect = 5e-25
Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 12/175 (6%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
+E +IL LGLDN+GKTTLL L E + PTQ + + K +D+GG +
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 73
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA 137
R W+ Y+ D ++Y+ID+ D++RF E+ +EL LL +E L+ VP LI NK D+ AA
Sbjct: 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133
Query: 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192
E+ + L R ++ CS + G +G W+ + +
Sbjct: 134 PASEIAEGLN------------LHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 88.1 bits (217), Expect = 6e-23
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 9 GILVSLGLW----QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKI 64
GIL + +W +E K++ +GLDN+GKTT+L+ +V PT EE+ I
Sbjct: 1 GILFT-RIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 59
Query: 65 KFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPF 124
+F +D+GG + R W YY + V+ ++D+ D+ER S ++ EL +L+ E L
Sbjct: 60 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 119
Query: 125 LILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEG 184
LI NK D+ + E+ + LT+ + C + G +G
Sbjct: 120 LIFANKQDVKECMTVAEISQFLKLTSIKD------------HQWHIQACCALTGEGLCQG 167
Query: 185 FKWLSQYIK 193
+W+ +K
Sbjct: 168 LEWMMSRLK 176
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 87.8 bits (216), Expect = 9e-23
Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 12/175 (6%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78
+E ++L LGLDN+GKTT+L E + PT + L K +D+GG + R
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS 138
W++Y+ D +++++D+ D++R + +REL +LL +E LA LI NK D+P A S
Sbjct: 61 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120
Query: 139 EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
+ ++ + L + + + CS V G WL I
Sbjct: 121 CNAIQEALELDSIRS------------HHWRIQGCSAVTGEDLLPGIDWLLDDIS 163
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 87.0 bits (214), Expect = 1e-22
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 12/171 (7%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVW 81
+IL +GLD +GKTT+L+ LK +V PT E + I F +D+GG R +W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE 141
+ Y+ +++++D+ D+ER +E++ EL +L+++ L D L+ NK D+P A + E
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121
Query: 142 LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192
+ +G L + R + G EG WLS +
Sbjct: 122 ITDKLG------------LHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 81.7 bits (201), Expect = 5e-20
Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQ 75
+++ ++L LG SGK+T++ ++ T + + K+ F FD+GG +
Sbjct: 2 VYRATHRLLLLGAGESGKSTIVKQMRIL---HVVLTSGIFETKFQVDKVNFHMFDVGGQR 58
Query: 76 MARRVWKDYYAKVDAVVYLI----------DAYDKERFSESKRELDALLSDEALADVPFL 125
RR W + V A+++++ + R E+ ++ ++ L + +
Sbjct: 59 DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 118
Query: 126 ILGNKID 132
+ NK D
Sbjct: 119 LFLNKQD 125
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 78.2 bits (191), Expect = 4e-19
Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 13/176 (7%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEELSIGKIKFKAFDLGGHQMA 77
+E ++ +GL SGKTT ++++ + + PT +++ G + K +D+GG
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA 137
R +W+ Y V A+VY++DA D+E+ SK EL LL L +P L+LGNK D+P A
Sbjct: 61 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 120
Query: 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
E EL M L+ R + + S K +WL Q+ K
Sbjct: 121 DEKELIEKMNLSAIQD------------REICCYSISCKEKDNIDITLQWLIQHSK 164
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.1 bits (178), Expect = 6e-17
Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 7/129 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRV- 80
+LF+GL +SGKT L L + Q + +S + + + L +
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61
Query: 81 ---WKDYYAKVDAVVYLIDAYDKERF-SESKRELDALLSDEALAD--VPFLILGNKIDIP 134
+ + AVV+++D+ +R + L +L D LI NK DI
Sbjct: 62 FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121
Query: 135 YAASEDELR 143
A S ++
Sbjct: 122 MAKSAKLIQ 130
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 72.0 bits (175), Expect = 9e-17
Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 12/175 (6%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78
+E +IL LGLD +GKTT+L+ L+ +V PT E ++ +KF+ +DLGG R
Sbjct: 4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 63
Query: 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS 138
W+ YY+ DAV+Y++D+ D++R SK EL A+L +E L ++ NK D+ A +
Sbjct: 64 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 123
Query: 139 EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
E+ +GL R ++F S + G E +WL + +K
Sbjct: 124 SSEMANSLGLPAL------------KDRKWQIFKTSATKGTGLDEAMEWLVETLK 166
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 68.4 bits (166), Expect = 3e-15
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 12/126 (9%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78
+ KIL LG SGK+T L ++ + PT+ + I + FK D+GG + R
Sbjct: 1 RLVKILLLGAGESGKSTFLKQMRI--IHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSER 58
Query: 79 RVWKDY----------YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILG 128
+ W + + + L++ R +ES + ++++ ++V ++
Sbjct: 59 KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL 118
Query: 129 NKIDIP 134
NK D+
Sbjct: 119 NKTDLL 124
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 65.4 bits (158), Expect = 4e-14
Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78
+E K+L LG SGK+T++ +K H+ + + FK FD+GG + R
Sbjct: 1 REVKLLLLGAGESGKSTIVKQMKII----HEAGTGIVETHFTFKDLHFKMFDVGGQRSER 56
Query: 79 RVWKDYYAKVDAVVYLIDAYDKERFSESK----------RELDALLSDEALADVPFLILG 128
+ W + V A+++ + D + + D++ +++ D ++
Sbjct: 57 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116
Query: 129 NKIDI 133
NK D+
Sbjct: 117 NKKDL 121
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.0 bits (157), Expect = 6e-14
Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78
+E K+L LG SGK+T + ++ PT + + F+ D+GG + R
Sbjct: 1 RELKLLLLGTGESGKSTFIKQMRIIH-GSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59
Query: 79 RVWKDYYAKVDAVVYLIDAYDKER----------FSESKRELDALLSDEALADVPFLILG 128
R W + V ++++L+ + ++ ESK +++ + ++
Sbjct: 60 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 119
Query: 129 NKID 132
NK D
Sbjct: 120 NKKD 123
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.2 bits (142), Expect = 5e-12
Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 18/173 (10%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQ----YPTSEELSIGKIKFKAFDLGGH 74
+E K++ LG GK+ L ++ Y E+ + D G
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 75 QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134
+ + Y + + +++ F + K D ++ + VP +++GNK+D+
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121
Query: 135 YAASED-----ELRYHMGLTNF-TTGKGNVNLDNTNVRPLEVFMCSIVRKMGY 181
L G T+ K +D E+F IVR+M Y
Sbjct: 122 SEREVSSSEGRALAEEWGCPFMETSAKSKTMVD-------ELFA-EIVRQMNY 166
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.9 bits (139), Expect = 1e-11
Identities = 27/177 (15%), Positives = 55/177 (31%), Gaps = 22/177 (12%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQPTQ----YPTSEELSIGKIKFKAFDLGGHQM 76
KIL +G GK+ LL +++ T + +++ K+K + +D G +
Sbjct: 4 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136
R + YY ++ + D D+ F+ K+ + L+
Sbjct: 64 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV 123
Query: 137 ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
+ D+ + S E F L++ I+
Sbjct: 124 VTADQGEALA-----------------KELGIPFIESSAKNDDNVNEIFFTLAKLIQ 163
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.8 bits (139), Expect = 2e-11
Identities = 33/177 (18%), Positives = 65/177 (36%), Gaps = 21/177 (11%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQ-----YPTSEELSIGKIKFKAFDLGGHQM 76
K+L +G GKT +L ++ + + EL +IK + +D G +
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136
R + YY ++ + D +++ F + + + + ADV +ILGNK D+
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCDVNDK 126
Query: 137 ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
+ R ++ ++ S + F L++ IK
Sbjct: 127 RQVSKERGEKLALDY---------------GIKFMETSAKANINVENAFFTLARDIK 168
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.6 bits (138), Expect = 4e-11
Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 8/163 (4%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQPTQ----YPTSEELSIGKIKFKAFDLGGHQM 76
K+L +G GK+ LL D+ + T + EL +K + +D G +
Sbjct: 8 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 67
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136
R + YY ++ + D D+E F+ K L + + L+
Sbjct: 68 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 127
Query: 137 ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKM 179
E ++ N LD+TNV + F+ ++ R++
Sbjct: 128 VVEYDVAKEFADANKMPFLETSALDSTNVE--DAFL-TMARQI 167
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (134), Expect = 8e-11
Identities = 29/177 (16%), Positives = 55/177 (31%), Gaps = 21/177 (11%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKI-----KFKAFDLGGHQM 76
K++ +G GK+ LL + ++ K + +D G +
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136
RR+ YY + + D + +R L L D A +++ +++GNK D+ +
Sbjct: 66 YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR-DHADSNIVIMLVGNKSDLRHL 124
Query: 137 ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
+ L S + E FK + I
Sbjct: 125 RAVPTDEARA---------------FAEKNNLSFIETSALDSTNVEEAFKNILTEIY 166
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (130), Expect = 4e-10
Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 30/187 (16%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPT---------------QYPTSEELSIGKIKF 66
K+L LG GKTT L+ D + T Q P K+
Sbjct: 7 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 66
Query: 67 KAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLI 126
+ +D G + R + ++ + + D ++ F + + L ++ + ++
Sbjct: 67 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 126
Query: 127 LGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFK 186
+GNK D+P +E + + + F S + +
Sbjct: 127 IGNKADLPDQREVNERQARELADKYG---------------IPYFETSAATGQNVEKAVE 171
Query: 187 WLSQYIK 193
L I
Sbjct: 172 TLLDLIM 178
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.9 bits (128), Expect = 9e-10
Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 9/132 (6%)
Query: 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARR 79
+ I+ G NSGKT+LL +L + + +Q D GH R
Sbjct: 3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ-EPLSAADYDGSGVTLVDFPGHVKLRY 61
Query: 80 VWKDYY----AKVDAVVYLIDA-YDKERFSESKRELDAL---LSDEALADVPFLILGNKI 131
DY V +++++D+ D ++ + + L + + LI NK
Sbjct: 62 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 121
Query: 132 DIPYAASEDELR 143
++ A +++
Sbjct: 122 ELFTARPPSKIK 133
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (122), Expect = 4e-09
Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 21/177 (11%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPT-----QYPTSEELSIGKIKFKAFDLGGHQM 76
K + +G GK+ LL D+R + +IK + +D G +
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136
R + + YY + + D +E F+ L+ + +++ +++GNK D+
Sbjct: 65 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR-QHSSSNMVIMLIGNKSDLESR 123
Query: 137 ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
L S E F ++ I
Sbjct: 124 RDVKREEGEAFAREHG---------------LIFMETSAKTACNVEEAFINTAKEIY 165
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.0 bits (121), Expect = 5e-09
Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 21/177 (11%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSE-----ELSIGKIKFKAFDLGGHQM 76
KIL +G + GKT+ L D+ + + +IK + +D G +
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136
R + YY + + D ++E F+ + + + + L++GNK D+
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ-IKTYSWDNAQVLLVGNKCDMEDE 125
Query: 137 ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
R + E F S + + F+ L I
Sbjct: 126 RVVSSERGRQLADHLG---------------FEFFEASAKDNINVKQTFERLVDVIC 167
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 51.1 bits (121), Expect = 5e-09
Identities = 26/176 (14%), Positives = 58/176 (32%), Gaps = 19/176 (10%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPT----QYPTSEELSIGKIKFKAFDLGGHQMA 77
K++ +G GK+ L + V+ Y L +++ D G +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA 137
+ +Y+ + + + + E F+ + + +L + +VPFL++GNK D+
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125
Query: 138 SEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
+ + S + + F L + I+
Sbjct: 126 QVSVEEAKNRADQWN---------------VNYVETSAKTRANVDKVFFDLMREIR 166
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (121), Expect = 5e-09
Identities = 32/176 (18%), Positives = 56/176 (31%), Gaps = 21/176 (11%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQP-----TQYPTSEELSIGKIKFKAFDLGGHQM 76
KIL +G GK++LL D+ + + K K +D G +
Sbjct: 9 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136
R + YY V+ + D ++ F + L+ L + D+ +++GNKID
Sbjct: 69 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 128
Query: 137 ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192
+ + S G F+ L + I
Sbjct: 129 EVDRNEGLKF----------------ARKHSMLFIEASAKTCDGVQCAFEELVEKI 168
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 8e-09
Identities = 26/179 (14%), Positives = 54/179 (30%), Gaps = 20/179 (11%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPT----QYPTSEELSIGKIKFKAFDLGGH 74
E K++ +G GK+ L L V Y + D G
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 75 QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134
+ + Y + + + + + F + + + + + DVP +++GNK D+
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 135 YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
E + + + S + G + F L + I+
Sbjct: 122 ARTVESRQAQDLARSYG----------------IPYIETSAKTRQGVEDAFYTLVREIR 164
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (118), Expect = 2e-08
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQ-----YPTSEELSIGKIKFKAFDLGGHQM 76
KI+ +G GKT L+ Q + E++ K+K + +D G +
Sbjct: 7 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 66
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135
R + + YY +A++ D +E F L + A V +++GNKID+
Sbjct: 67 FRSITQSYYRSANALILTYDITCEESFRCLPEWLRE-IEQYASNKVITVLVGNKIDLAE 124
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.9 bits (118), Expect = 2e-08
Identities = 27/177 (15%), Positives = 50/177 (28%), Gaps = 21/177 (11%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQ-----YPTSEELSIGKIKFKAFDLGGHQM 76
K L +G +GK+ LLH +++ + +K + +D G +
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136
R V + YY + + D +E ++ L + + +IL A
Sbjct: 67 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD--ARMLASQNIVIILCGNKKDLDA 124
Query: 137 ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
E L S + E F ++ I
Sbjct: 125 DREVTFLEAS--------------RFAQENELMFLETSALTGENVEEAFVQCARKIL 167
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.9 bits (115), Expect = 3e-08
Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 6/120 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDL------GGHQ 75
KI+ +G N GKT L + R I + + G +
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 63
Query: 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135
+ + + YY V AVV++ D + F ++ D+P +++GNK D+
Sbjct: 64 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 123
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (114), Expect = 5e-08
Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPT-----QYPTSEELSIGKIKFKAFDLGGHQM 76
K + +G GK+ LLH +++ + P E+S KIK + +D G +
Sbjct: 6 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135
R V + YY + + D + ++ L + + +++GNK D+
Sbjct: 66 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR-NLTNPNTVIILIGNKADLEA 123
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 5e-08
Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 17/171 (9%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQ----YPTSEELSIGKIKFKAFDLGGH 74
+E K++ LG GK+ L V+ Y E+ + + D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 75 QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134
+ + Y + + F++ + + +L + DVP +++GNK D+
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 135 YAASEDELRYHMGLTNFTTGKGNVN------LDNTNVRPLEVFMCSIVRKM 179
+ + N N NV E+F +VR++
Sbjct: 122 DERVVGKEQGQ----NLARQWCNCAFLESSAKSKINVN--EIFY-DLVRQI 165
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 1e-07
Identities = 26/177 (14%), Positives = 49/177 (27%), Gaps = 5/177 (2%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQ---YPTSEELSIGKIKFKAFDLGGHQ 75
+ K + +G GKT LL ++ + GK Q
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135
+ V + + E+ R + P +++G K+D+
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 136 AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192
E LT T +G ++ CS + + G F + +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGA--VKYLECSALTQRGLKTVFDEAIRAV 178
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (109), Expect = 2e-07
Identities = 29/178 (16%), Positives = 52/178 (29%), Gaps = 22/178 (12%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSI------GKIKFKAFDLGGHQ 75
K++ +G GKT LL KD + + + K+K + +D G +
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67
Query: 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135
R V YY A++ L D +K F + L + L+
Sbjct: 68 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127
Query: 136 AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
+ E + L S + F +++ +K
Sbjct: 128 RVVKREDGEKLAKEY----------------GLPFMETSAKTGLNVDLAFTAIAKELK 169
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 9e-07
Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 7/176 (3%)
Query: 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQPT---QYPTSEELSIGKIKFKAFDLGGHQM 76
K++ +G GKT LL + ++ + PT Y E+ +++ +D G +
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136
R+ Y D ++ + + + +VP +++GNK D+
Sbjct: 63 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 121
Query: 137 ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192
M +G + CS K G E F+ ++
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGA--FGYMECSAKTKDGVREVFEMATRAA 175
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (104), Expect = 1e-06
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELSI----GKIKFKAFDLGGHQM 76
K++FLG + GKT+L+ + +Q T ++ I+ + +D G +
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134
R + Y A V + D + F ++ + +D + + E +DV +++GNK D+
Sbjct: 62 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT-ERGSDVIIMLVGNKTDLA 118
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 2e-06
Identities = 27/170 (15%), Positives = 46/170 (27%), Gaps = 5/170 (2%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQPT--QYPTSEELSIGKIKFKAFDLGGHQMAR 78
K + +G GKT LL + ++ PT + G+ Q
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS 138
+ V + + E+ +E PFL++G +ID+ S
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 139 EDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWL 188
E T + CS + + G F
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVK--YVECSALTQKGLKNVFDEA 172
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.7 bits (99), Expect = 5e-06
Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 18/177 (10%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPT-----QYPTSEELSIGKIKFKAFDLGGHQM 76
K++ LG GK++++ +++ ++ +KF+ +D G +
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136
+ YY A + + D + F +++ + L ++A D+ ++GNKID+
Sbjct: 65 FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVK-ELHEQASKDIIIALVGNKIDMLQE 123
Query: 137 ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
E ++ + L F S + F + + I
Sbjct: 124 GGERKVAREE------------GEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 5e-06
Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 3/138 (2%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSI---GKIKFKAFDLGGHQMAR 78
K + +G GKT LL ++ + +S+ GK Q
Sbjct: 11 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 70
Query: 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS 138
+ + V + + ++ +E E +VPFL++G +ID+
Sbjct: 71 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK 130
Query: 139 EDELRYHMGLTNFTTGKG 156
M +G
Sbjct: 131 TLARLNDMKEKPICVEQG 148
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 9e-06
Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 21/177 (11%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPT-----QYPTSEELSIGKIKFKAFDLGGHQM 76
K++ LG GK++L+ + + Q + + L +KF+ +D G +
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136
+ YY A + + D ++E F+ +K + L + ++ + GNK D+
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANK 126
Query: 137 ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
+ D + + L S M E F +++ +
Sbjct: 127 RAVDFQEAQSYADDNS---------------LLFMETSAKTSMNVNEIFMAIAKKLP 168
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 2e-05
Identities = 25/180 (13%), Positives = 54/180 (30%), Gaps = 19/180 (10%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG----KIKFKAFDLGG 73
+ K++ +G GK+ L V S + D G
Sbjct: 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63
Query: 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDI 133
+ + + Y + + D++ F+E + +L + D P +++GNK D+
Sbjct: 64 QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 123
Query: 134 PYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193
+ + F S ++ E F+ L + ++
Sbjct: 124 ESQRQVPRSEASAFGASHH---------------VAYFEASAKLRLNVDEAFEQLVRAVR 168
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.2 bits (95), Expect = 2e-05
Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 5/140 (3%)
Query: 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELSIGKIK---FKAFDLGGHQM 76
KI+ +G GKT LLH+ + + PT + + +D G
Sbjct: 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA 136
V Y DAV+ D E +S + E + L++G K D+
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPETL-DSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 121
Query: 137 ASEDELRYHMGLTNFTTGKG 156
S + T + +G
Sbjct: 122 VSTLVELSNHRQTPVSYDQG 141
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 2e-05
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGK-----IKFKAFDLGGHQM 76
K++ LG GKT+L+ + + T S + +D G +
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSE 105
+ YY + + + D D++ F +
Sbjct: 65 FHALGPIYYRDSNGAILVYDITDEDSFQK 93
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 3e-05
Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 8/128 (6%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQP----TQYPTSEELSIGK-IKFKAFDLGGHQM 76
K++ LG GK++L++ + ++ + G + + +D G +
Sbjct: 8 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67
Query: 77 ARRVWKDYYAKVDAVV---YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDI 133
R + +Y D + + D+ + S K+E + PF+ILGNKIDI
Sbjct: 68 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 127
Query: 134 PYAASEDE 141
E
Sbjct: 128 SERQVSTE 135
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 3e-05
Identities = 30/172 (17%), Positives = 62/172 (36%), Gaps = 22/172 (12%)
Query: 20 EAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELSIGKIKFKAFDLGGHQMAR 78
E K+ G GK+ L+ +R + ++ PT T + + + ++
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 61
Query: 79 RVWKD--YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY- 135
+ + + V + D D+ F E + L + +V +++GNK D+ +
Sbjct: 62 DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 121
Query: 136 -AASEDELRYHMGLTNF-------TTGKGNVNLDNTNVRPLEVFMCSIVRKM 179
S +E TG+GN+ E+F + R++
Sbjct: 122 RQVSTEEGEKLATELACAFYECSACTGEGNIT---------EIFY-ELCREV 163
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.6 bits (91), Expect = 6e-05
Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 4/118 (3%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPT----QYPTSEELSIGKIKFKAFDLGGHQMA 77
K++ +G GK+ L + V Y E+ D G +
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65
Query: 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135
+ + Y D + + DK F R +L + P +++ NK+D+ +
Sbjct: 66 SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.3 bits (90), Expect = 7e-05
Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 22/180 (12%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPT------QYPTSEELSIGKIKFKAFDLGGHQ 75
K++ LG GKT+L+H +++ Q + +D G +
Sbjct: 4 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 63
Query: 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSE---SKRELDALLSDEALADVPFLILGNKID 132
+ + +Y D V + D + F + E + + PF+ILGNKID
Sbjct: 64 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 123
Query: 133 IPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192
+ + L ++ + +F+ S + F+ +++
Sbjct: 124 AEESKKIVSEKSAQELAK-------------SLGDIPLFLTSAKNAINVDTAFEEIARSA 170
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.5 bits (88), Expect = 1e-04
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 5/89 (5%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDL-----GGHQM 76
K++ +G GK++++ + ++ + L G +
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSE 105
+ K YY A V + D+E F
Sbjct: 64 FDAITKAYYRGAQACVLVFSTTDRESFEA 92
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 2e-04
Identities = 30/180 (16%), Positives = 62/180 (34%), Gaps = 24/180 (13%)
Query: 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQ-----YPTSEELSIGKIKFKAFDLG 72
Q + K++ +G +GKTT + + +P + G IKF +D
Sbjct: 1 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTA 60
Query: 73 GHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKID 132
G + + YY + + + D + + L+ ++P ++ GNK+D
Sbjct: 61 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVD 118
Query: 133 IPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192
I + + N L+ + S + + F WL++ +
Sbjct: 119 IKDRKVKAKSIVFHRKKN-----------------LQYYDISAKSNYNFEKPFLWLARKL 161
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.4 bits (88), Expect = 2e-04
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQP-----TQYPTSEELSIGKIKFKAFDLGG 73
+E K+ LG GK++++ ++ + + + + KF +D G
Sbjct: 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62
Query: 74 HQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKREL 110
+ R + YY A + + D +E FS K +
Sbjct: 63 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWV 99
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.8 bits (86), Expect = 3e-04
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQPT----QYPTSEELSIGKIKFKAFDLGGHQM 76
K++ LG GKT+L++ +++ Q++ T + + + +D G +
Sbjct: 4 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 63
Query: 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALL---SDEALADVPFLILGNKIDI 133
+ + +Y D V + D F D L S + PF++LGNKID+
Sbjct: 64 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 123
Query: 134 PY 135
Sbjct: 124 EN 125
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (83), Expect = 5e-04
Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 4/121 (3%)
Query: 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG----KIKFKAFDLGGH 74
K KI LG + GK++L + + V + I + + D G
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 62
Query: 75 QMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134
+ Y ++ + + + F K LL +P +++GNK D+
Sbjct: 63 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122
Query: 135 Y 135
Sbjct: 123 M 123
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 7e-04
Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 5/121 (4%)
Query: 20 EAKILFLGLDNSGKTTLLHMLKDERLV-QHQPT---QYPTSEELSIGKIKFKAFDLGGHQ 75
+ ++ G GK++L+ + PT Y + D G
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 61
Query: 76 MARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEA-LADVPFLILGNKIDIP 134
+ + +K A + + ++ E K + + + + +P +++GNK D
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121
Query: 135 Y 135
Sbjct: 122 P 122
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 36.1 bits (82), Expect = 0.001
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 15/100 (15%)
Query: 22 KILFLGLDNSGKTTLLHMLKDERLV----QHQPTQYPTSEELSIGKIKFKAFDLGGH--- 74
+++ +G N GK+TLL+ L +E T+ SEE+ I I F+ D G
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61
Query: 75 -------QMARRVWKDYYAKVDAVVYLIDAYDKERFSESK 107
R + K D V++++DA + K
Sbjct: 62 TNDLVERLGIERTLQ-EIEKADIVLFVLDASSPLDEEDRK 100
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 35.4 bits (80), Expect = 0.002
Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 19/187 (10%)
Query: 21 AKILFLGLDNSGKTTLLHMLKDERL--------------VQHQPTQYPTSEELSIGKIKF 66
A I+F G N GK+TL++ L +++ ++ + +
Sbjct: 1 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLP 60
Query: 67 KAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLI 126
K +D +D V ++D + + + D FL
Sbjct: 61 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQ--FLR 118
Query: 127 LGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFK 186
+ I D+++ + NF K V L + S
Sbjct: 119 ELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDK---VFIPISAKFGDNIERLKN 175
Query: 187 WLSQYIK 193
+ + I+
Sbjct: 176 RIFEVIR 182
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.2 bits (77), Expect = 0.004
Identities = 25/175 (14%), Positives = 58/175 (33%), Gaps = 19/175 (10%)
Query: 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQ----YPTSEELSIGKIKFKAFDLG 72
Q++ +++ +G GK+ L V Y + + D
Sbjct: 2 MQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTA 61
Query: 73 GHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKID 132
G + + + Y + + + D+ F E + +L + + P +++GNK D
Sbjct: 62 GQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKAD 121
Query: 133 IPYAASEDELRYHMGLTNF------TTGKGNVNLDNTNVRPLEVF--MCSIVRKM 179
+ + + + K +N+D + F + ++RK
Sbjct: 122 LDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVD-------QAFHELVRVIRKF 169
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 193 | |||
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.97 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.97 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.97 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.97 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.97 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.97 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.97 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.97 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.97 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.96 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.96 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.96 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.96 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.96 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.96 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.96 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.96 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.96 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.96 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.95 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.95 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.94 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.93 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.92 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.92 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.92 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.91 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.91 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.91 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.9 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.9 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.9 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.9 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.89 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.89 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.89 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.89 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.88 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.87 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.86 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.84 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.82 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.81 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.8 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.76 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.76 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.76 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.75 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.75 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.75 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.61 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.6 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.57 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.57 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.56 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.52 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.17 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.15 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.12 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.11 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.08 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.76 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.59 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.52 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.45 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.36 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.28 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.25 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.24 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.22 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.2 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.09 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.06 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.04 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.82 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.82 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.78 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.74 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.72 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.71 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.7 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.7 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.69 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.66 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.66 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.65 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.65 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.64 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.64 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.63 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.61 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.6 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.6 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.6 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.59 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.58 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.58 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.57 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.56 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.55 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.54 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.52 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.51 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.51 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.5 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 97.49 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.49 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.49 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.48 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 97.48 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 97.47 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.46 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.42 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.41 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 97.41 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.41 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.41 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.38 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.37 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.32 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.31 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.3 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.27 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.24 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.24 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.24 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.23 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.23 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.21 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.2 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 97.19 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 97.18 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.16 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.15 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.13 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 97.11 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.1 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.09 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 97.08 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 97.08 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.06 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 97.05 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 97.05 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 97.04 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 97.02 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.01 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.01 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 96.92 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.89 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.88 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.88 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 96.88 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.86 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.85 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.83 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 96.82 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.78 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.74 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.73 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.7 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 96.62 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 96.53 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.5 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.48 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.45 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.45 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.44 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.33 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 96.3 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.28 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.26 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.24 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.09 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 96.08 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.08 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.05 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.05 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.96 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 95.91 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 95.88 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.83 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.83 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.81 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.79 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.73 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.67 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.65 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.53 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 95.49 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.47 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.46 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 95.43 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.42 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 95.4 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.38 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 95.37 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.37 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.33 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.25 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 95.24 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.08 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.04 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 95.04 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 95.03 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 94.97 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 94.93 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.92 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.92 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.91 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.52 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.45 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.43 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 94.36 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.26 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 94.23 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 93.84 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 93.79 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.64 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 93.56 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 93.36 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.25 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 92.47 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 91.31 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 91.16 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.16 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.05 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 90.87 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 87.75 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 87.62 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 87.61 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 87.54 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 87.45 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 86.72 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 86.16 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 85.04 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 84.58 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.41 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.89 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 83.38 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 83.27 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.22 |
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=1.4e-35 Score=207.04 Aligned_cols=176 Identities=35% Similarity=0.573 Sum_probs=152.2
Q ss_pred HHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhh
Q 029453 5 DWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDY 84 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 84 (193)
.+++.++.++...++.+||+++|++|||||||++++.++.+....+|.+.........+..+.+||+||++.+...+..+
T Consensus 2 ~~~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 81 (182)
T d1moza_ 2 NIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCY 81 (182)
T ss_dssp HHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGT
T ss_pred hhHHHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHhh
Confidence 46777887777888999999999999999999999998888877888888888899999999999999999998888899
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
+..++++++|+|++++.++.....++...+......+.|+++|+||+|+......+++...++.....
T Consensus 82 ~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~------------ 149 (182)
T d1moza_ 82 YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELK------------ 149 (182)
T ss_dssp TTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCC------------
T ss_pred hccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHh------------
Confidence 99999999999999999999999998888777667789999999999998877888888887765521
Q ss_pred CccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+.+++|||++|+|++++|+||.+.+
T Consensus 150 ~~~~~~~e~SA~~g~gv~e~~~~l~~~i 177 (182)
T d1moza_ 150 DRSWSIVASSAIKGEGITEGLDWLIDVI 177 (182)
T ss_dssp SSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred hCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 1347899999999999999999998865
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=7.4e-35 Score=202.20 Aligned_cols=169 Identities=34% Similarity=0.590 Sum_probs=146.8
Q ss_pred HHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 12 VSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 12 ~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
...+..++++||+++|++|||||||++++.++++....++.+.+...+.+.+..+.+||++|++.+...+..++..+|++
T Consensus 8 k~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 87 (176)
T d1fzqa_ 8 KLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (176)
T ss_dssp HCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred HhhCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhcccee
Confidence 33455678999999999999999999999999988777777778888889999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
++|+|+++..++.....++..+.......++|+++|+||+|+.......++.+.+...... ...+.++
T Consensus 88 i~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 155 (176)
T d1fzqa_ 88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIR------------DRVWQIQ 155 (176)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCC------------SSCEEEE
T ss_pred EEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHH------------hcCCEEE
Confidence 9999999999999999888888776666789999999999998877777777776644411 1457899
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+|||++|+|++++|+||.+.+
T Consensus 156 ~~SA~tg~gv~e~~~~l~~~i 176 (176)
T d1fzqa_ 156 SCSALTGEGVQDGMNWVCKNV 176 (176)
T ss_dssp ECCTTTCTTHHHHHHHHHHTC
T ss_pred EEeCCCCCCHHHHHHHHHhcC
Confidence 999999999999999998864
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=3.1e-34 Score=196.97 Aligned_cols=163 Identities=33% Similarity=0.553 Sum_probs=144.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
+++||+++|++|||||||++++.++.+. ...||.+.....+..++..+.+||+||++.+...+..++..++++++|+|+
T Consensus 1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 80 (164)
T d1zd9a1 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDA 80 (164)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEET
T ss_pred CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhccccc
Confidence 3689999999999999999999998876 456788888888899999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
++.+++.....++..++......+.|+++|+||.|+.......++.+.++...+.. ..+.++++||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~------------~~~~~~e~Sa~~ 148 (164)
T d1zd9a1 81 ADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQD------------REICCYSISCKE 148 (164)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCS------------SCEEEEECCTTT
T ss_pred ccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHh------------CCCEEEEEeCcC
Confidence 99999999999999998876677899999999999987778888888877655211 347899999999
Q ss_pred CCChhHHHHhhhhhcC
Q 029453 178 KMGYGEGFKWLSQYIK 193 (193)
Q Consensus 178 ~~gi~~~~~~i~~~l~ 193 (193)
|+|++++|+||++++|
T Consensus 149 g~gv~e~~~~l~~~~k 164 (164)
T d1zd9a1 149 KDNIDITLQWLIQHSK 164 (164)
T ss_dssp CTTHHHHHHHHHHTCC
T ss_pred CcCHHHHHHHHHHccC
Confidence 9999999999999875
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=3.9e-34 Score=196.60 Aligned_cols=162 Identities=31% Similarity=0.568 Sum_probs=142.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
+++||+++|++|||||||+++|.+..+....+|.+.....+..++..+.+||+||++.+...+..++..++++++|+|++
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 80 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA 80 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecc
Confidence 57899999999999999999999988888888998888889999999999999999999888888999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecC
Q 029453 99 DKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRK 178 (193)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 178 (193)
+..++.....++...+......+.|+++|+||+|+......++....+....+. ...+.+++|||++|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~g 148 (165)
T d1ksha_ 81 DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIR------------SHHWRIQGCSAVTG 148 (165)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC------------SSCEEEEECCTTTC
T ss_pred cchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhh------------cCCCEEEEEECCCC
Confidence 999999988888888766666789999999999998777777777666544421 13578999999999
Q ss_pred CChhHHHHhhhhhc
Q 029453 179 MGYGEGFKWLSQYI 192 (193)
Q Consensus 179 ~gi~~~~~~i~~~l 192 (193)
+|++++|+||.+.+
T Consensus 149 ~gv~e~~~~l~~~i 162 (165)
T d1ksha_ 149 EDLLPGIDWLLDDI 162 (165)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=100.00 E-value=3.3e-34 Score=198.42 Aligned_cols=165 Identities=33% Similarity=0.578 Sum_probs=146.5
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
.++.+||+++|++|||||||++++.++.+....+|.+............+.+||+||+..+...+..++..++++++|+|
T Consensus 9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D 88 (173)
T d1e0sa_ 9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 88 (173)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEE
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEEe
Confidence 66789999999999999999999999888877778888888888889999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
+++.+++.....++...+......+.|+++++||+|+.......++...++..... ...+.+++|||+
T Consensus 89 ~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~------------~~~~~~~e~SA~ 156 (173)
T d1e0sa_ 89 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR------------DRNWYVQPSCAT 156 (173)
T ss_dssp TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC------------SSCEEEEECBTT
T ss_pred cccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHH------------hCCCEEEEeeCC
Confidence 99999999999999888876666789999999999998878888888887655421 135789999999
Q ss_pred cCCChhHHHHhhhhhcC
Q 029453 177 RKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 177 ~~~gi~~~~~~i~~~l~ 193 (193)
+|+|++|+|+||.+.++
T Consensus 157 tg~gv~e~~~~l~~~~k 173 (173)
T d1e0sa_ 157 SGDGLYEGLTWLTSNYK 173 (173)
T ss_dssp TTBTHHHHHHHHHHHCC
T ss_pred CCcCHHHHHHHHHHhcC
Confidence 99999999999998875
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.2e-31 Score=184.69 Aligned_cols=155 Identities=21% Similarity=0.196 Sum_probs=110.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
+||+++|.+|||||||++++.+..+....++..... ..+..++ ..+.+||++|++.+...+..+++.+|++++|+|+
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 81 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV 81 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence 699999999999999999999887665555444332 3444444 6788999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
++++++..+..|+..+........+|+++|+||+|+.. ..+..+....- .. ..+++++|||
T Consensus 82 t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~-~~----------------~~~~~~e~Sa 144 (168)
T d2gjsa1 82 TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA-VV----------------FDCKFIETSA 144 (168)
T ss_dssp TCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHH-HH----------------HTSEEEECBT
T ss_pred cccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHH-Hh----------------cCCEEEEEeC
Confidence 99999999999999887666567799999999999973 33333322211 10 1247899999
Q ss_pred ecCCChhHHHHhhhhhc
Q 029453 176 VRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~l 192 (193)
++|.|++++|++|.+.+
T Consensus 145 k~~~~v~~~f~~l~~~i 161 (168)
T d2gjsa1 145 ALHHNVQALFEGVVRQI 161 (168)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999999998754
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.97 E-value=2.1e-30 Score=180.51 Aligned_cols=185 Identities=60% Similarity=1.031 Sum_probs=148.4
Q ss_pred HHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccC
Q 029453 9 GILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKV 88 (193)
Q Consensus 9 ~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (193)
++++.++..+++.||+++|++|||||||++++.++.+....++.+.+...+..++.....||++++......+..+....
T Consensus 2 ~~~~~~~~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (186)
T d1f6ba_ 2 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAI 81 (186)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGC
T ss_pred chHHhccccCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecccccccccccchhhhhhHHhhhhccc
Confidence 45566778899999999999999999999999999988777888888888999999999999999998888888888999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+.+++++|.++...+......+..........+.|+++++||.|++......++...++....................+
T Consensus 82 ~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (186)
T d1f6ba_ 82 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL 161 (186)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred ceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCC
Confidence 99999999999988888777777776666667899999999999988888888887777666544444444444445668
Q ss_pred EEEEEeeecCCChhHHHHhhhhhcC
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
.+++|||++|+|++|+|+||.+++.
T Consensus 162 ~~~~~SA~tg~Gi~e~~~~l~~~i~ 186 (186)
T d1f6ba_ 162 EVFMCSVLKRQGYGEGFRWMAQYID 186 (186)
T ss_dssp EEEECBTTTTBSHHHHHHHHHTTCC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHhhC
Confidence 9999999999999999999999863
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.97 E-value=1.9e-30 Score=176.77 Aligned_cols=160 Identities=31% Similarity=0.586 Sum_probs=138.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCCh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDK 100 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 100 (193)
+||+++|++|||||||++++.++++....++..............+.+||++|...+......++..++++++++|..++
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~ 80 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecCh
Confidence 58999999999999999999998887666666666667778889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCC
Q 029453 101 ERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMG 180 (193)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 180 (193)
.++.....++..+.........|+++++||.|+.......++.......... ...+.+++|||++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~SAktg~g 148 (160)
T d1r8sa_ 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR------------HRNWYIQATCATSGDG 148 (160)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCS------------SCCEEEEECBTTTTBT
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHh------------hCCCEEEEeECCCCCC
Confidence 9999999999999877767789999999999998777777776665544421 1347899999999999
Q ss_pred hhHHHHhhhhhc
Q 029453 181 YGEGFKWLSQYI 192 (193)
Q Consensus 181 i~~~~~~i~~~l 192 (193)
++++|+||.++|
T Consensus 149 i~e~~~~l~~~l 160 (160)
T d1r8sa_ 149 LYEGLDWLSNQL 160 (160)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.7e-31 Score=183.62 Aligned_cols=160 Identities=18% Similarity=0.239 Sum_probs=126.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCccee-EEEe--CCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTSE-ELSI--GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
++++||+++|.+|||||||++++..+++... .++.+.... .+.. ....+.+||++|++.+...+..+++.+|++++
T Consensus 1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 80 (167)
T d1c1ya_ 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence 4689999999999999999999999998753 445443322 2222 34689999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++++++.+..|+..+.+....++.|+++|+||+|+.. ....++....... . ....++
T Consensus 81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~-~---------------~~~~~~ 144 (167)
T d1c1ya_ 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ-W---------------CNCAFL 144 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-T---------------TSCEEE
T ss_pred eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHH-h---------------CCCEEE
Confidence 999999999999999999887655557899999999999973 3333332222111 1 225789
Q ss_pred EEeeecCCChhHHHHhhhhhcC
Q 029453 172 MCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
+|||++|+|++++|++|.+++.
T Consensus 145 e~Sak~g~gv~e~F~~l~~~i~ 166 (167)
T d1c1ya_ 145 ESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHT
T ss_pred EEcCCCCcCHHHHHHHHHHHhc
Confidence 9999999999999999988763
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.3e-31 Score=182.66 Aligned_cols=159 Identities=18% Similarity=0.274 Sum_probs=126.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCc-ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYP-TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..+.+||+++|.+|||||||++++.++.+... .+|... ....+..++ ..+.+||++|++++...+..+++.+++++
T Consensus 3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i 82 (173)
T d2fn4a1 3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 82 (173)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeee
Confidence 46789999999999999999999999887754 334332 234455554 57888999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|.+++.++..+..|+..+.+.....+.|+++|+||+|+.. ....++....... ..+++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 145 (173)
T d2fn4a1 83 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS-----------------HHVAY 145 (173)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEE
T ss_pred eecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHh-----------------cCCEE
Confidence 9999999999999999999887655557899999999999863 3333332222211 12478
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++|||++|.|++++|++|.+.+
T Consensus 146 ~e~Sak~g~gv~e~f~~l~~~i 167 (173)
T d2fn4a1 146 FEASAKLRLNVDEAFEQLVRAV 167 (173)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEeCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999998765
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.97 E-value=1.2e-31 Score=184.52 Aligned_cols=157 Identities=18% Similarity=0.296 Sum_probs=123.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+-+||+++|.+|||||||++++..+++.. +.+|.+... ..+..++ ..+.+||++|++++......+++.+|++++|
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence 34699999999999999999999888764 456665442 3344444 6788999999999998888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|.++++++.....|+..+.+.....+.|+++|+||+|+. +..+.++....... ..+++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e 145 (168)
T d1u8za_ 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ-----------------WNVNYVE 145 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTCEEEE
T ss_pred eeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHH-----------------cCCeEEE
Confidence 9999999999999999988766556789999999999986 33444443332211 1247899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
|||++|.|++++|++|.+.+
T Consensus 146 ~Sak~g~gv~e~f~~l~~~i 165 (168)
T d1u8za_ 146 TSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHH
Confidence 99999999999999998765
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.3e-31 Score=184.75 Aligned_cols=154 Identities=19% Similarity=0.328 Sum_probs=118.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEe----CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEELSI----GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
++||+++|++|||||||++++.++.+.. +.+|.+........ ....+.+||++|+..+...+..+++.++++++|
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence 5799999999999999999999888764 44566554433332 347899999999999998889999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+|+++++++..+..|+..+.... .+.|+++|+||+|+......++....... ..++++++|
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~e~S 143 (170)
T d1i2ma_ 83 FDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFHRK-----------------KNLQYYDIS 143 (170)
T ss_dssp EETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSHHHHSS-----------------CSSEEEEEB
T ss_pred cccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHHHHHHHH-----------------cCCEEEEEe
Confidence 99999999999999998876532 57999999999999754433321111111 235789999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|++|.|++++|++|.+.+
T Consensus 144 ak~~~~v~e~f~~l~~~l 161 (170)
T d1i2ma_ 144 AKSNYNFEKPFLWLARKL 161 (170)
T ss_dssp TTTTBTTTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998754
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.3e-31 Score=182.24 Aligned_cols=158 Identities=18% Similarity=0.253 Sum_probs=124.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
++++||+++|.+|||||||++++.++.+... .++.+... .....++ ..+.+||++|++.+......++++++++++
T Consensus 1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il 80 (167)
T d1kaoa_ 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence 4789999999999999999999999887743 44544322 2333443 678899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++.....|+..+.......+.|+++|+||+|+.. ....++....... ..++++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 143 (167)
T d1kaoa_ 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE-----------------WGCPFM 143 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTSCEE
T ss_pred eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHH-----------------cCCeEE
Confidence 999999999999999999887655557899999999999862 3333332211111 113579
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+|||++|.|++++|++|.+++
T Consensus 144 e~Sak~g~~i~e~f~~i~~~i 164 (167)
T d1kaoa_ 144 ETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp EECTTCHHHHHHHHHHHHHHH
T ss_pred EECCCCCcCHHHHHHHHHHHH
Confidence 999999999999999998765
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.97 E-value=5.8e-30 Score=177.31 Aligned_cols=165 Identities=30% Similarity=0.561 Sum_probs=139.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
.++++||+++|.+|||||||++++.++++....++.+.........+..+.+||++|++.....+..++..++++++++|
T Consensus 12 ~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d 91 (177)
T d1zj6a1 12 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 91 (177)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEE
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecceEEEEeccccccccccchhhhhccceeeeeecc
Confidence 57889999999999999999999999998877778888888888899999999999999888888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeee
Q 029453 97 AYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIV 176 (193)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 176 (193)
.++.+++......+..........+.|+++|+||+|++.....++....+..... ....++++++||+
T Consensus 92 ~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~Sa~ 159 (177)
T d1zj6a1 92 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI------------KDHQWHIQACCAL 159 (177)
T ss_dssp TTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC------------CSSCEEEEECBTT
T ss_pred cccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhh------------HhcCCEEEEEeCC
Confidence 9999988887777777766655578999999999999877777777777765541 1145789999999
Q ss_pred cCCChhHHHHhhhhhcC
Q 029453 177 RKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 177 ~~~gi~~~~~~i~~~l~ 193 (193)
+|+|++++++||.++|+
T Consensus 160 tg~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 160 TGEGLCQGLEWMMSRLK 176 (177)
T ss_dssp TTBTHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 99999999999999875
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=1.7e-30 Score=178.96 Aligned_cols=157 Identities=21% Similarity=0.286 Sum_probs=122.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..-+||+++|.+|||||||++++.++.+.. ..++.+... ..+.... ..+.+|||||++++...+..+++.+|++|
T Consensus 3 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~i 82 (169)
T d3raba_ 3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 82 (169)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEE
T ss_pred CeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 456899999999999999999999888664 344444333 3333433 57899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++++++.....++..... ......|+++++||+|+.. ..+.++....-.. ..+++
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~-----------------~~~~~ 144 (169)
T d3raba_ 83 LMYDITNEESFNAVQDWSTQIKT-YSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH-----------------LGFEF 144 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH-HCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEE
T ss_pred EEEECccchhhhhhhhhhhhhhc-ccCCcceEEEEEeecccccccccchhhhHHHHHH-----------------cCCEE
Confidence 99999999999988888876643 3346789999999999873 3344443221111 12478
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++|||++|.|++++|++|.+.+
T Consensus 145 ~e~Sak~g~gv~e~f~~l~~~i 166 (169)
T d3raba_ 145 FEASAKDNINVKQTFERLVDVI 166 (169)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEecCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.9e-30 Score=176.64 Aligned_cols=156 Identities=17% Similarity=0.237 Sum_probs=123.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-PTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
..+||+++|.+|||||||++++.++.+.... ++.... ......++ ..+.+||++|++.+...+..+++.+|++++
T Consensus 3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il 82 (166)
T d1z0fa1 3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 82 (166)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence 4689999999999999999999998877543 333333 33444444 588999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++.+++.....++..+.+. .....|+++++||+|+. .....++....... ..++++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 144 (166)
T d1z0fa1 83 VYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-----------------NGLLFL 144 (166)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEE
T ss_pred EeccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHHHHHH-----------------cCCEEE
Confidence 99999999999999988887543 44678999999999986 33333333332211 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+|||++|.|++++|++|.+.+
T Consensus 145 e~Saktg~~v~e~f~~i~~~i 165 (166)
T d1z0fa1 145 EASAKTGENVEDAFLEAAKKI 165 (166)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998875
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.1e-30 Score=179.36 Aligned_cols=157 Identities=17% Similarity=0.284 Sum_probs=123.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCccee-EEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTSE-ELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+++||+++|.+|||||||++++.++.+... .++.+.... .+... ...+.+||++|++.+......++..++++++|
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv 81 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence 578999999999999999999999887753 445443321 22222 36789999999999999888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
+|++++.+++....|+..+.+.....++|+++|+||+|+... .+.++..+ +... ..+++++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~----------------~~~~~~e~ 144 (166)
T d1ctqa_ 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQD-LARS----------------YGIPYIET 144 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHH-HHHH----------------HTCCEEEC
T ss_pred ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHH-HHHH----------------hCCeEEEE
Confidence 999999999999999998876555567999999999999743 33433222 2111 11367999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|+|++++|++|++.+
T Consensus 145 Sak~g~gi~e~f~~i~~~i 163 (166)
T d1ctqa_ 145 SAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 9999999999999998765
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.9e-30 Score=176.29 Aligned_cols=154 Identities=19% Similarity=0.261 Sum_probs=122.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee--EEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSE--ELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|.+|||||||++++.++++.. +.++.+.... ....+ ...+.+||++|++.+...+..++..++++++|+
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence 699999999999999999999988774 3445444433 23333 367899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|.+++.++..+..|+..+.... ..+.|+++|+||+|+. +....++........ .+++++|
T Consensus 81 d~~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~e~ 142 (164)
T d1yzqa1 81 DITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKEL-----------------NVMFIET 142 (164)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHT-----------------TCEEEEC
T ss_pred ccccccchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhhhhhHHHHHHHHHHc-----------------CCEEEEe
Confidence 9999999999999998876533 3579999999999986 334433332222111 2468999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|+|++++|++|.++|
T Consensus 143 SAk~g~~v~e~f~~i~~~l 161 (164)
T d1yzqa1 143 SAKAGYNVKQLFRRVAAAL 161 (164)
T ss_dssp CTTTCTTHHHHHHHHHHHS
T ss_pred cCCCCcCHHHHHHHHHHhh
Confidence 9999999999999999875
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.4e-30 Score=177.75 Aligned_cols=158 Identities=17% Similarity=0.278 Sum_probs=122.1
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc-eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT-SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.+++||+++|.+|||||||++++.++.+.. ..+|.+.. ...+..++ ..+.+||++|++.+......++..+|++++
T Consensus 3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (171)
T d2erya1 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL 82 (171)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence 356899999999999999999999988764 44555432 23344444 579999999999998888889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|.++++++..+..|+..+.........|+++|+||+|+.. ....++....... ..++++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~ 145 (171)
T d2erya1 83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQ-----------------LKVTYM 145 (171)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHH-----------------TTCEEE
T ss_pred eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHH-----------------cCCEEE
Confidence 999999999999999998887665557899999999999873 3444443332211 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+|||++|.|++++|+.|.+.+
T Consensus 146 e~Sak~~~~i~e~f~~l~~~i 166 (171)
T d2erya1 146 EASAKIRMNVDQAFHELVRVI 166 (171)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHHHH
Confidence 999999999999999998764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=8.2e-31 Score=179.72 Aligned_cols=154 Identities=18% Similarity=0.306 Sum_probs=121.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee--EEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSE--ELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
++||+++|++|||||||++++.++.+.. +.+|.+.... .....+ ..+.+||++|++++......+++.++++++|
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence 4799999999999999999999888764 4566655433 333343 6789999999999988888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++++++++.+..|+..+.... .++|+++|+||+|+. +....++...... . ..+++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~-~----------------~~~~~~e 142 (164)
T d1z2aa1 82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-R----------------LKLRFYR 142 (164)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-H----------------HTCEEEE
T ss_pred EeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhHHHHH-H----------------cCCEEEE
Confidence 99999999999998888875432 479999999999986 3334444322111 1 1247899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
+||++|.|++++|++|.+++
T Consensus 143 ~Sak~g~~v~e~f~~l~~~~ 162 (164)
T d1z2aa1 143 TSVKEDLNVSEVFKYLAEKH 162 (164)
T ss_dssp CBTTTTBSSHHHHHHHHHHH
T ss_pred eccCCCcCHHHHHHHHHHHH
Confidence 99999999999999997753
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.7e-31 Score=180.65 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=125.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
.+.+||+++|.+|||||||++++.++.+.. +.+|.+... ..+..++ ..+.+||++|.+.+..+...++..+|++++
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il 81 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 81 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence 467899999999999999999999888764 456665542 3445554 577889999999988888888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++..+..|+..+.+.....+.|+++|+||+|+.. ..+.++...... . ..+.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~-~----------------~~~~~~ 144 (167)
T d1xtqa1 82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-S----------------WNAAFL 144 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-H----------------HTCEEE
T ss_pred hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHH-H----------------cCCEEE
Confidence 999999999999999998887665567899999999999863 344444322111 1 124679
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+|||++|.|++++|+.|+..+
T Consensus 145 e~Sak~~~~v~~~f~~li~~~ 165 (167)
T d1xtqa1 145 ESSAKENQTAVDVFRRIILEA 165 (167)
T ss_dssp ECCTTCHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHh
Confidence 999999999999999987654
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=4.3e-30 Score=176.56 Aligned_cols=158 Identities=21% Similarity=0.219 Sum_probs=124.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeE--EEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEE--LSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
.+++||+++|.+|||||||++++..+++.. +.+|.+..... ...+ ...+.+||++|++.+......++..+++++
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 81 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence 478999999999999999999999988774 44555544432 2233 356789999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++++++..+..|+..+... ...+.|+++|+||+|+. +....++..+.... ..+.+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~ 143 (167)
T d1z0ja1 82 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADS-----------------IHAIF 143 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEE
T ss_pred EEeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhccccchhHHHHHHHHHH-----------------cCCEE
Confidence 999999999999999888776543 34689999999999996 33444443322211 12478
Q ss_pred EEEeeecCCChhHHHHhhhhhcC
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
++|||++|.||+++|.+|.+++.
T Consensus 144 ~e~SAk~~~nV~e~f~~l~~~i~ 166 (167)
T d1z0ja1 144 VETSAKNAININELFIEISRRIP 166 (167)
T ss_dssp EECBTTTTBSHHHHHHHHHHHCC
T ss_pred EEEecCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999998763
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.3e-30 Score=178.54 Aligned_cols=157 Identities=16% Similarity=0.167 Sum_probs=121.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+++||+++|.+|||||||++++.++.+.. +.+|.+... .....++ ..+.+||++|++.+......++..+|++++|
T Consensus 1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 80 (171)
T d2erxa1 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 80 (171)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence 47899999999999999999999988764 456665433 2334444 5678899999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDE-ALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
+|+++++++..+..|+..+.... ...+.|+++|+||+|+. +..+.++..+.-.. ..++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~-----------------~~~~~~ 143 (171)
T d2erxa1 81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALART-----------------WKCAFM 143 (171)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTCEEE
T ss_pred eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHH-----------------cCCeEE
Confidence 99999999999998888775532 23678999999999986 33444443221111 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+|||++|.|++++|+.|.+.+
T Consensus 144 e~Sak~~~~v~e~f~~l~~~~ 164 (171)
T d2erxa1 144 ETSAKLNHNVKELFQELLNLE 164 (171)
T ss_dssp ECBTTTTBSHHHHHHHHHHTC
T ss_pred EEcCCCCcCHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.1e-30 Score=178.78 Aligned_cols=157 Identities=20% Similarity=0.212 Sum_probs=121.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
...+||+++|.+|||||||++++.++.+.. ..++... ....+..++ ..+.+|||||++++...+..+++.+++++
T Consensus 3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i 82 (171)
T d2ew1a1 3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 82 (171)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence 346899999999999999999999988764 3344443 334455554 56889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|.+++.++.....++..+.+. .....|+++|+||+|+.. ..+.++....... ..+++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~-----------------~~~~~ 144 (171)
T d2ew1a1 83 LTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSEA-----------------QDMYY 144 (171)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HTCCE
T ss_pred Eeeecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHHHHHHHh-----------------CCCEE
Confidence 999999999999999988887653 335789999999999863 3334333222111 12467
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++|||++|+||+++|++|.+++
T Consensus 145 ~~~SAktg~gV~e~f~~l~~~l 166 (171)
T d2ew1a1 145 LETSAKESDNVEKLFLDLACRL 166 (171)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEccCCCCCHHHHHHHHHHHH
Confidence 9999999999999999987653
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.7e-30 Score=177.50 Aligned_cols=158 Identities=19% Similarity=0.252 Sum_probs=123.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcceeEEE--eC--CeEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTSEELS--IG--KIKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~~~~~--~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
+...+||+++|.+|||||||++++.++++... .++......... .+ ...+.+||+||++++...+..++..++++
T Consensus 2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 81 (174)
T d2bmea1 2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 81 (174)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence 34568999999999999999999998887643 445544433322 22 36799999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
++|+|.++++++..+..++..+.... ..+.|+++|+||+|+.. ....++.. .+... ..++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~-~~~~~----------------~~~~ 143 (174)
T d2bmea1 82 LLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEAS-RFAQE----------------NELM 143 (174)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHH-HHHHH----------------TTCE
T ss_pred EEEEecccchhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHH-HHHHh----------------CCCE
Confidence 99999999999999999999886543 35899999999999863 22222222 11111 1257
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++||++|+|++++|++|.+.+
T Consensus 144 ~~e~Sak~~~gi~e~f~~l~~~i 166 (174)
T d2bmea1 144 FLETSALTGENVEEAFVQCARKI 166 (174)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeeCCCCcCHHHHHHHHHHHH
Confidence 89999999999999999998754
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=5.9e-30 Score=176.22 Aligned_cols=157 Identities=17% Similarity=0.219 Sum_probs=124.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+.+||+++|.+|||||||++++.++.+.. +.+|.+... ..+..++ ..+.+||++|++.+......+++.+|++++|
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv 82 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV 82 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence 46899999999999999999999988764 445544332 3334443 6788999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+++++++..+..|+..+.+.....+.|+++++||+|+.. ..+.++..+.... ..+++++
T Consensus 83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~-----------------~~~~~~e 145 (169)
T d1x1ra1 83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATK-----------------YNIPYIE 145 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHH-----------------HTCCEEE
T ss_pred cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHH-----------------cCCEEEE
Confidence 99999999999999999987665557899999999999873 3444443222111 1135799
Q ss_pred EeeecCC-ChhHHHHhhhhhc
Q 029453 173 CSIVRKM-GYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~-gi~~~~~~i~~~l 192 (193)
+||+++. ||+++|+.|.+.+
T Consensus 146 ~Sak~~~~nV~~~F~~l~~~i 166 (169)
T d1x1ra1 146 TSAKDPPLNVDKTFHDLVRVI 166 (169)
T ss_dssp EBCSSSCBSHHHHHHHHHHHH
T ss_pred EcCCCCCcCHHHHHHHHHHHH
Confidence 9999875 9999999998764
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2e-30 Score=178.24 Aligned_cols=156 Identities=22% Similarity=0.277 Sum_probs=117.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeE--EEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEE--LSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
..+||+++|.+|||||||++++.++.+.. ..+|.+..... ...+ ...+.+||++|++++...+..+++.+|++++
T Consensus 2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (167)
T d1z08a1 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 81 (167)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence 46899999999999999999999988774 44555544433 3333 3789999999999999988899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++..+..|+..+... .....|+++|+||+|+. +..+.++........ .++++
T Consensus 82 v~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~-----------------~~~~~ 143 (167)
T d1z08a1 82 VYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAESV-----------------GAKHY 143 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHT-----------------TCEEE
T ss_pred EEeCCchhHHHhhhhhhhhcccc-cccccceeeeccccccccccccchHHHHHHHHHc-----------------CCeEE
Confidence 99999999999999988876432 23578999999999986 344555543322211 24789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+|||++|.|++++|++|.+++
T Consensus 144 e~Sak~~~~v~e~F~~l~~~i 164 (167)
T d1z08a1 144 HTSAKQNKGIEELFLDLCKRM 164 (167)
T ss_dssp EEBTTTTBSHHHHHHHHHHHH
T ss_pred EEecCCCcCHHHHHHHHHHHH
Confidence 999999999999999998764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.3e-29 Score=174.60 Aligned_cols=157 Identities=20% Similarity=0.271 Sum_probs=124.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeE--EEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEE--LSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
..+||+++|.+|||||||++++..+++.. ..++.+..... .... ...+.+||++|++.+...+..+++.++++++
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 84 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence 46899999999999999999999888774 44555544432 2333 3678999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|.++.+++.....++..+.+. ..++.|+++|+||+|+. +..+.++....... ..++++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~-----------------~~~~~~ 146 (170)
T d1r2qa_ 85 VYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYADD-----------------NSLLFM 146 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEE
T ss_pred EeccchhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHHHHHHHHh-----------------cCCEEE
Confidence 99999999999999888887653 33679999999999987 33444433222111 125789
Q ss_pred EEeeecCCChhHHHHhhhhhcC
Q 029453 172 MCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
+|||++|+||+++|++|.+.+.
T Consensus 147 e~SAk~g~~V~e~f~~l~~~i~ 168 (170)
T d1r2qa_ 147 ETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp ECCTTTCTTHHHHHHHHHHTSC
T ss_pred EeeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999988763
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=9.2e-30 Score=176.20 Aligned_cols=157 Identities=22% Similarity=0.300 Sum_probs=121.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
.+.+||+++|.+|||||||++++.++.+... .++.+.. ...+..++ ..+.+||++|++.+...+..+++.+++++
T Consensus 2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i 81 (175)
T d2f9la1 2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 81 (175)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence 4568999999999999999999999887643 3333333 34444554 57889999999999998889999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|.++++++.....++..+.+. ...+.|+++|+||+|+.. ....+........ ...++
T Consensus 82 ~v~d~~~~~S~~~~~~~~~~i~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 143 (175)
T d2f9la1 82 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-----------------NNLSF 143 (175)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEE
T ss_pred EEEECCCcccchhHHHHHHHHHHh-cCCCCcEEEEEeeecccccccchHHHHHHhhcc-----------------cCceE
Confidence 999999999999999999888654 336799999999999973 2332222222111 22578
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++|||++|.|++++|++|.+.+
T Consensus 144 ~e~Sa~~g~~i~e~f~~l~~~i 165 (175)
T d2f9la1 144 IETSALDSTNVEEAFKNILTEI 165 (175)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEecCCCcCHHHHHHHHHHHH
Confidence 9999999999999999987653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.5e-30 Score=178.95 Aligned_cols=158 Identities=18% Similarity=0.252 Sum_probs=121.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEe------------CCeEEEEEEcCChhhhHHhHH
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT--SEELSI------------GKIKFKAFDLGGHQMARRVWK 82 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~------------~~~~~~~~D~~g~~~~~~~~~ 82 (193)
...+||+++|++|||||||++++.++++... .++.... ...+.+ ....+.+||++|++++..++.
T Consensus 3 d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~ 82 (186)
T d2f7sa1 3 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 82 (186)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred CEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHH
Confidence 3468999999999999999999998887643 2232222 122221 135789999999999999999
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccC
Q 029453 83 DYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNL 160 (193)
Q Consensus 83 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
.+++++|++|+|+|++++.++..+..|+..+.........|+++|+||+|+. +....++.......
T Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~------------ 150 (186)
T d2f7sa1 83 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK------------ 150 (186)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH------------
T ss_pred HHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHH------------
Confidence 9999999999999999999999999998887655555678999999999996 33444433222111
Q ss_pred CCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 161 DNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 161 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++|||++|.|++++|++|.+.+
T Consensus 151 -----~~~~~~e~Sak~~~~i~e~f~~l~~~i 177 (186)
T d2f7sa1 151 -----YGIPYFETSAATGQNVEKAVETLLDLI 177 (186)
T ss_dssp -----TTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -----cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 124679999999999999999998753
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.6e-30 Score=180.33 Aligned_cols=169 Identities=17% Similarity=0.301 Sum_probs=121.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+.||+++|.+|||||||++++..+.+.. +.+|.+... ...... ...+.+||++|++.+...+..+++.+|++++|+
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 81 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence 4699999999999999999999998774 445554322 223333 357999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|++++++|.....++........ ++.|+++|+||+|+.......+............... ...+. .....++++|||
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~-~~~a~-~~~~~~~~E~SA 158 (177)
T d1kmqa_ 82 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEG-RDMAN-RIGAFGYMECSA 158 (177)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHH-HHHHH-HTTCSEEEECCT
T ss_pred ccchhHHHHHHHHHHHHHHHHhC-CCCceEEeeecccccchhhHHHHHHHhhcccccHHHH-HHHHH-HcCCcEEEEecC
Confidence 99999999988887777765433 5799999999999975333222222222111100000 00000 012257899999
Q ss_pred ecCCChhHHHHhhhhh
Q 029453 176 VRKMGYGEGFKWLSQY 191 (193)
Q Consensus 176 ~~~~gi~~~~~~i~~~ 191 (193)
++|.|++++|+.+++.
T Consensus 159 kt~~gi~e~F~~i~~~ 174 (177)
T d1kmqa_ 159 KTKDGVREVFEMATRA 174 (177)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHH
Confidence 9999999999998764
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=9.1e-29 Score=168.82 Aligned_cols=165 Identities=62% Similarity=1.020 Sum_probs=141.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKE 101 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 101 (193)
||+++|++|||||||++++.++++....||.+.........+....+||++|...+......+...++++++++|.++..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 81 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE 81 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchh
Confidence 89999999999999999999999888888888888888888899999999999988888888899999999999999998
Q ss_pred hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCCh
Q 029453 102 RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGY 181 (193)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 181 (193)
++.....++..........+.|+++++||.|+.......++.+.+.......... ......+.+++|||++|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~SA~tg~Gv 156 (166)
T d2qtvb1 82 RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQR-----IEGQRPVEVFMCSVVMRNGY 156 (166)
T ss_dssp GHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC--------CCSSCCEEEEEEBTTTTBSH
T ss_pred hhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHh-----hcccCCCEEEEeeCCCCCCH
Confidence 8888888888887777778899999999999988888888888877665322111 11124578999999999999
Q ss_pred hHHHHhhhhh
Q 029453 182 GEGFKWLSQY 191 (193)
Q Consensus 182 ~~~~~~i~~~ 191 (193)
+|+|+||.++
T Consensus 157 ~e~~~~l~~~ 166 (166)
T d2qtvb1 157 LEAFQWLSQY 166 (166)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhCC
Confidence 9999999874
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.3e-29 Score=175.31 Aligned_cols=156 Identities=22% Similarity=0.334 Sum_probs=108.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEEe-----CCeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEELSI-----GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
-+||+++|++|||||||++++.++++.. ..++.+........ ....+.+||++|++++...+..+++.++++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence 3799999999999999999999888764 34454444333322 23678999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhC---CCCCCCcEEEEeeCCCCCC--C-CCHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 94 LIDAYDKERFSESKRELDALLSD---EALADVPFLILGNKIDIPY--A-ASEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~pviiv~nK~Dl~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
|+|++++.++.....|+..+... ....++|+++|+||+|+.. . .+.++.. .+.... ..
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~-~~~~~~---------------~~ 145 (175)
T d1ky3a_ 82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQ-ELAKSL---------------GD 145 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHH-HHHHHT---------------TS
T ss_pred EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHH-HHHHHc---------------CC
Confidence 99999999999888888777542 3335789999999999873 2 2332222 111111 22
Q ss_pred EEEEEEeeecCCChhHHHHhhhhh
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
.++++|||++|.|++++|++|.+.
T Consensus 146 ~~~~e~SA~~g~gv~e~f~~l~~~ 169 (175)
T d1ky3a_ 146 IPLFLTSAKNAINVDTAFEEIARS 169 (175)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCcCHHHHHHHHHHH
Confidence 467999999999999999999864
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.9e-29 Score=173.99 Aligned_cols=157 Identities=22% Similarity=0.269 Sum_probs=124.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccC-CCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-PTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
..+||+++|.+|||||||++++.++++.... ++.... ...+..++ ..+.+|||||++++...+..++..+|++++
T Consensus 6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~ 85 (177)
T d1x3sa1 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 85 (177)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4589999999999999999999998876443 333332 33444543 579999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY-AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|+|++++.++.....++..+.........|+++++||.|... ....++....... ..+.+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~-----------------~~~~~~e 148 (177)
T d1x3sa1 86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-----------------HSMLFIE 148 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-----------------TTCEEEE
T ss_pred EEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHH-----------------CCCEEEE
Confidence 999999999999999999987655567799999999999874 3444443332211 1247899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
|||++|+|++++|++|.+.+
T Consensus 149 ~Sa~tg~gv~e~f~~l~~~l 168 (177)
T d1x3sa1 149 ASAKTCDGVQCAFEELVEKI 168 (177)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998754
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=6.4e-30 Score=178.50 Aligned_cols=172 Identities=20% Similarity=0.273 Sum_probs=121.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee-EEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSE-ELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
...+||+++|.+|||||||++++..+.+.. +.+|.+.... .+... ...+.+||++|++.+...+..+++.+|++++
T Consensus 7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~il 86 (185)
T d2atxa1 7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 86 (185)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeee
Confidence 467899999999999999999999988764 4456544332 23333 3678999999999998888899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMC 173 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (193)
|+|++++++|+....++....+.. ..+.|+++|+||+|+....................... ...+. ....+.+++|
T Consensus 87 v~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~-~~~a~-~~~~~~~~E~ 163 (185)
T d2atxa1 87 CFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQG-QKLAK-EIGACCYVEC 163 (185)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHH-HHHHH-HHTCSCEEEC
T ss_pred ccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHH-HHHHH-HcCCCEEEEe
Confidence 999999999998877777766543 35799999999999964322222111111111000000 00000 0022578999
Q ss_pred eeecCCChhHHHHhhhhhc
Q 029453 174 SIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 174 Sa~~~~gi~~~~~~i~~~l 192 (193)
||++|.|++++|+.+++++
T Consensus 164 SAk~~~gv~e~F~~li~~i 182 (185)
T d2atxa1 164 SALTQKGLKTVFDEAIIAI 182 (185)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 9999999999999987653
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.7e-29 Score=177.54 Aligned_cols=157 Identities=20% Similarity=0.283 Sum_probs=123.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCccee--EEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSE--ELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..-+||+|+|++|||||||++++.++.+.. +.+|.+.... .+..+ ...+.+|||||++.+...+..+++.++++|
T Consensus 4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i 83 (194)
T d2bcgy1 4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 83 (194)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 356899999999999999999999888664 4456555433 34444 468899999999999988899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++++++.....++..+... ...+.|+++|+||+|+.. ....++....... ....+
T Consensus 84 ~v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~ 145 (194)
T d2bcgy1 84 IVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA-----------------NKMPF 145 (194)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCCE
T ss_pred EEEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhhhc-----------------cCcce
Confidence 999999999999988888877543 346899999999999973 3333332222211 12467
Q ss_pred EEEeeecCCChhHHHHhhhhhc
Q 029453 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 171 ~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++|||++|.|++++|++|.+.+
T Consensus 146 ~e~SAk~g~gi~e~f~~l~~~i 167 (194)
T d2bcgy1 146 LETSALDSTNVEDAFLTMARQI 167 (194)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEecCcCccHHHHHHHHHHHH
Confidence 9999999999999999998754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.1e-29 Score=174.04 Aligned_cols=156 Identities=20% Similarity=0.261 Sum_probs=119.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcc--eeEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPT--SEELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
..+||+++|++|||||||++++.++++... .++.... ....... ...+.+||++|++.+...+..++..+|++++
T Consensus 2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il 81 (173)
T d2a5ja1 2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 81 (173)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence 347999999999999999999999887643 3333332 2233333 3678999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|+++++++.....++..+.+. ...++|+++|+||+|+. +....++....... ..++++
T Consensus 82 v~d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~-----------------~~~~~~ 143 (173)
T d2a5ja1 82 VYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFARE-----------------HGLIFM 143 (173)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEE
T ss_pred EEeecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHHHHHH-----------------cCCEEE
Confidence 99999999999999999888653 33679999999999986 23343332222211 124789
Q ss_pred EEeeecCCChhHHHHhhhhhc
Q 029453 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++||++|.|++++|++|.+.+
T Consensus 144 e~Sa~tg~~V~e~f~~i~~~i 164 (173)
T d2a5ja1 144 ETSAKTACNVEEAFINTAKEI 164 (173)
T ss_dssp EECTTTCTTHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHH
Confidence 999999999999999997754
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.4e-29 Score=172.96 Aligned_cols=156 Identities=20% Similarity=0.246 Sum_probs=118.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
.++||+++|++|||||||++++.++.+. .+.||.+... .....++ ..+.+||++|++.+. ....++..++++++|
T Consensus 1 ~eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv 79 (168)
T d2atva1 1 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV 79 (168)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence 3689999999999999999999998876 4456665443 2223333 678999999998764 456678899999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP--YAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|+++++++..+..++..........+.|+++|+||+|+. +..+.++..+.-.. ..+++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~-----------------~~~~~~e 142 (168)
T d2atva1 80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE-----------------LACAFYE 142 (168)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTSEEEE
T ss_pred cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHH-----------------hCCeEEE
Confidence 9999999999988776655444444689999999999996 34445443222111 1246899
Q ss_pred EeeecCC-ChhHHHHhhhhhc
Q 029453 173 CSIVRKM-GYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~-gi~~~~~~i~~~l 192 (193)
|||++|. ||+++|..|.+.+
T Consensus 143 ~Saktg~gnV~e~F~~l~~~i 163 (168)
T d2atva1 143 CSACTGEGNITEIFYELCREV 163 (168)
T ss_dssp CCTTTCTTCHHHHHHHHHHHH
T ss_pred EccccCCcCHHHHHHHHHHHH
Confidence 9999998 5999999988754
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.9e-29 Score=171.31 Aligned_cols=158 Identities=22% Similarity=0.302 Sum_probs=115.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc--CCCCCccee--EEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH--QPTQYPTSE--ELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDA 90 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 90 (193)
+...+||+++|++|||||||++++.++++... .++.+.... .+...+ ..+.+|||||++.+...+..+++.+|+
T Consensus 3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~ 82 (170)
T d2g6ba1 3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 82 (170)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence 55678999999999999999999998886532 233343333 344444 578899999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|+|.++++++.....++....... ....|+++|+||+|+.. ..+.++...... . ..+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~-~----------------~~~ 144 (170)
T d2g6ba1 83 LLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAK-E----------------YGL 144 (170)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHH-H----------------HTC
T ss_pred eEEEecCCcccchhhhhhhhhhhhhcc-CCCceEEEEEeeechhhcccccHHHHHHHHH-H----------------cCC
Confidence 999999999999999998888776543 35789999999999874 333333222211 1 124
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++|||++|.|++++|++|.+.+
T Consensus 145 ~~~e~Sak~g~gi~e~f~~l~~~i 168 (170)
T d2g6ba1 145 PFMETSAKTGLNVDLAFTAIAKEL 168 (170)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHc
Confidence 689999999999999999998865
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=1.1e-29 Score=175.50 Aligned_cols=158 Identities=20% Similarity=0.280 Sum_probs=95.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCc--ceeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEE
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYP--TSEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAV 91 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 91 (193)
..+-+||+++|.+|||||||++++.++.+.. ..+|.+. ....+..++ ..+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~ 82 (173)
T d2fu5c1 3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 82 (173)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEE
Confidence 3456899999999999999999999887653 3334333 334555554 5778899999999999989999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 92 VYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYA--ASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
|+|+|++++.++..+..++..+.. ....+.|+++|+||+|+... ...++...... . ..++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~--~---------------~~~~ 144 (173)
T d2fu5c1 83 MLVYDITNEKSFDNIRNWIRNIEE-HASADVEKMILGNKCDVNDKRQVSKERGEKLAL--D---------------YGIK 144 (173)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHH-HSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHH--H---------------HTCE
T ss_pred EEEEECCChhhHHHHHHHHHHhhh-hccCCceEEEEEecccchhhcccHHHHHHHHHH--h---------------cCCE
Confidence 999999999999999888888753 33467999999999999743 33333222211 1 2357
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++|||++|+|++++|++|.+.+
T Consensus 145 ~~e~Sa~~g~gv~e~f~~l~~~i 167 (173)
T d2fu5c1 145 FMETSAKANINVENAFFTLARDI 167 (173)
T ss_dssp EEECCC---CCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998765
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3e-28 Score=167.69 Aligned_cols=155 Identities=20% Similarity=0.319 Sum_probs=123.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcc--eeEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPT--SEELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
.+||+++|.+|||||||++++.++++.. +.+|.+.. ...+...+ ..+.+||++|++.+...+..++..+|++++|
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence 5799999999999999999999998774 45566543 33455544 6899999999999999989999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-----CCCHHHHHHhhCCCccccCCCcccCCCCCCccEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY-----AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLE 169 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (193)
+|.+++.++.....++...... .....|+++++||+|+.. ....++..+.... ..++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~-----------------~~~~ 144 (170)
T d1ek0a_ 83 YDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEE-----------------KGLL 144 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH-----------------HTCE
T ss_pred EeCCcccchhhhhhhhhhhccc-cccccceeeeecccccccccchhhhhHHHHHHHHHH-----------------cCCE
Confidence 9999999999999888776543 335789999999999852 3333332221111 2257
Q ss_pred EEEEeeecCCChhHHHHhhhhhc
Q 029453 170 VFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 170 ~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++|||++|.|++++|+.|.+++
T Consensus 145 ~~e~Sak~g~gV~e~F~~i~~~i 167 (170)
T d1ek0a_ 145 FFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHTTS
T ss_pred EEEecCCCCcCHHHHHHHHHHHh
Confidence 89999999999999999998876
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=3.7e-29 Score=174.47 Aligned_cols=157 Identities=18% Similarity=0.293 Sum_probs=120.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcceeEEE--e--CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTSEELS--I--GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+||+++|.+|||||||++++.++++.. +.+|.+....... . ....+.+||++|+......+..++..++++++|+
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 82 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 82 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence 699999999999999999999988764 4456655443332 2 2368889999999988888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhC---CCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEE
Q 029453 96 DAYDKERFSESKRELDALLSD---EALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~---~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (193)
|.+++.++..+..|+..+... ....++|+++|+||+|+.......+....+.... ...++++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~---------------~~~~~~e 147 (184)
T d1vg8a_ 83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSK---------------NNIPYFE 147 (184)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHT---------------TSCCEEE
T ss_pred cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHh---------------cCCeEEE
Confidence 999999999888888776543 2234689999999999874333333222221111 2357899
Q ss_pred EeeecCCChhHHHHhhhhhc
Q 029453 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~l 192 (193)
|||++|.|++++|++|++.+
T Consensus 148 ~Sak~~~gI~e~f~~l~~~i 167 (184)
T d1vg8a_ 148 TSAKEAINVEQAFQTIARNA 167 (184)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHH
Confidence 99999999999999987653
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2e-28 Score=169.28 Aligned_cols=159 Identities=19% Similarity=0.272 Sum_probs=120.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVV 92 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 92 (193)
..-+||+++|.+|||||||++++.++.+.. +.+|.+... ......+ ..+.+||++|+......+..++..+++++
T Consensus 4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 83 (174)
T d1wmsa_ 4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 83 (174)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence 345799999999999999999999888774 334444332 2333343 57789999999998888888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHh---CCCCCCCcEEEEeeCCCCCC-CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 93 YLIDAYDKERFSESKRELDALLS---DEALADVPFLILGNKIDIPY-AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~pviiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++|.+++.++.....|+..+.. .....+.|+++|+||+|+.. ....++....... . ...
T Consensus 84 ~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~-~---------------~~~ 147 (174)
T d1wmsa_ 84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD-N---------------GDY 147 (174)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH-T---------------TCC
T ss_pred EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHH-c---------------CCC
Confidence 99999999999988888766543 33446799999999999974 4444444332211 1 224
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++|||++|.|++++|++|++.+
T Consensus 148 ~~~e~Sak~~~gI~e~f~~l~~~i 171 (174)
T d1wmsa_ 148 PYFETSAKDATNVAAAFEEAVRRV 171 (174)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEcCCCCcCHHHHHHHHHHHH
Confidence 689999999999999999998754
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.5e-28 Score=169.63 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=115.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCcc--eeEEEeCC--eEEEEEEcCC---hhhhHHhHHhhhccCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLV--QHQPTQYPT--SEELSIGK--IKFKAFDLGG---HQMARRVWKDYYAKVD 89 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~--~~~~~~~~--~~~~~~D~~g---~~~~~~~~~~~~~~~d 89 (193)
..+||+++|.+|||||||++++.+..+. ...++.+.. ...+..++ ..+.+||+++ ++++ ....+++.+|
T Consensus 2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~ 79 (172)
T d2g3ya1 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD 79 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence 4689999999999999999999887654 333444433 23444444 4678888765 4444 4566789999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 90 AVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
++++|+|+++++++..+..|+..+.......++|+++|+||+|+.. ..+.++... +... ..
T Consensus 80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~-~a~~----------------~~ 142 (172)
T d2g3ya1 80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA-CAVV----------------FD 142 (172)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH-HHHH----------------HT
T ss_pred eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHH-HHHH----------------cC
Confidence 9999999999999999999999887665557899999999999863 344444221 1111 12
Q ss_pred EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
++++++||++|.|++++|++|.+.+
T Consensus 143 ~~~~e~Sak~g~~i~~~f~~l~~~i 167 (172)
T d2g3ya1 143 CKFIETSAAVQHNVKELFEGIVRQV 167 (172)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCcCHHHHHHHHHHHH
Confidence 4789999999999999999998765
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=6.1e-29 Score=173.19 Aligned_cols=169 Identities=15% Similarity=0.251 Sum_probs=120.9
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVY 93 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 93 (193)
-+.+||+++|.+|||||||+++|..+.+.. +.+|.+... ..+..++ ..+.+||++|++.+...+..++..+|++++
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence 367899999999999999999999988764 455655332 2333443 578899999999999998899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH-HHHHhhCCCc-cccCCCcccCCCCCCccEEEE
Q 029453 94 LIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASED-ELRYHMGLTN-FTTGKGNVNLDNTNVRPLEVF 171 (193)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 171 (193)
|+|++++++++....++....+.. ..+.|+++|+||+|+....... +......... ...+.. .+ .....+.++
T Consensus 83 v~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---~a-~~~~~~~~~ 157 (183)
T d1mh1a_ 83 CFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA---MA-KEIGAVKYL 157 (183)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH---HH-HHTTCSEEE
T ss_pred eeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHH---HH-HHcCCceEE
Confidence 999999999998877666665443 3578999999999986432211 1111111100 000000 00 001236899
Q ss_pred EEeeecCCChhHHHHhhhhh
Q 029453 172 MCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 172 ~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+|||++|.||+++|+.|++.
T Consensus 158 E~SAk~~~~V~e~F~~l~~~ 177 (183)
T d1mh1a_ 158 ECSALTQRGLKTVFDEAIRA 177 (183)
T ss_dssp ECCTTTCTTHHHHHHHHHHH
T ss_pred EcCCCCCcCHHHHHHHHHHH
Confidence 99999999999999998864
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=5.4e-28 Score=165.61 Aligned_cols=154 Identities=23% Similarity=0.306 Sum_probs=117.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcccc-CCCCCcce--eEEEeC--CeEEEEEEcCChhhhHH-hHHhhhccCCEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQH-QPTQYPTS--EELSIG--KIKFKAFDLGGHQMARR-VWKDYYAKVDAVV 92 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii 92 (193)
+-+||+++|.+|||||||++++.++++... .++.+... ...... ...+.+||++|...... .+..+++++|+++
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 80 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence 357999999999999999999998887643 33444333 233333 46788999999877654 4667889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHHhhCCCccccCCCcccCCCCCCccEEE
Q 029453 93 YLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPY--AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEV 170 (193)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (193)
+|+|+++++++..+..|+..+.+.....+.|+++|+||+|+.. ..+.++..+.... ..+++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~ 143 (165)
T d1z06a1 81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADT-----------------HSMPL 143 (165)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCCE
T ss_pred EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHH-----------------CCCEE
Confidence 9999999999999999999987766667899999999999863 3455443322111 11367
Q ss_pred EEEeeec---CCChhHHHHhhh
Q 029453 171 FMCSIVR---KMGYGEGFKWLS 189 (193)
Q Consensus 171 ~~~Sa~~---~~gi~~~~~~i~ 189 (193)
++|||++ +.||+++|++|.
T Consensus 144 ~e~SAkt~~~~~~V~e~F~~lA 165 (165)
T d1z06a1 144 FETSAKNPNDNDHVEAIFMTLA 165 (165)
T ss_dssp EECCSSSGGGGSCHHHHHHHHC
T ss_pred EEEecccCCcCcCHHHHHHHhC
Confidence 9999987 459999999874
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.96 E-value=1.2e-27 Score=163.88 Aligned_cols=163 Identities=34% Similarity=0.611 Sum_probs=139.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 97 (193)
.+++||+++|.+|||||||++++.++++....++.+.........+..+.+||.+|+..............+++++++|+
T Consensus 3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (169)
T d1upta_ 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 82 (169)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CcceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhh
Confidence 36789999999999999999999999988877888888888888899999999999998888888888899999999999
Q ss_pred CChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeec
Q 029453 98 YDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVR 177 (193)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (193)
.+..++.....++............|+++++||.|+.......++...+..... ....+++++|||++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~SA~~ 150 (169)
T d1upta_ 83 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPAL------------KDRKWQIFKTSATK 150 (169)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC------------TTSCEEEEECCTTT
T ss_pred hhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHH------------hcCCCEEEEEeCCC
Confidence 988888888777777766666678999999999999887777777776654431 11457999999999
Q ss_pred CCChhHHHHhhhhhc
Q 029453 178 KMGYGEGFKWLSQYI 192 (193)
Q Consensus 178 ~~gi~~~~~~i~~~l 192 (193)
|+|++++|++|.+.+
T Consensus 151 g~gv~e~~~~l~~~l 165 (169)
T d1upta_ 151 GTGLDEAMEWLVETL 165 (169)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998865
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=9.3e-29 Score=173.38 Aligned_cols=168 Identities=20% Similarity=0.280 Sum_probs=119.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
+.+||+++|++|||||||++++..+.+.. +.+|.+... ...... ...+.+||++|++++...+..+++.+|++++|
T Consensus 2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 81 (191)
T d2ngra_ 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 81 (191)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence 57899999999999999999999998764 445655433 223333 35789999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCcc--ccCCCcccCCCCCCccEEEEE
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNF--TTGKGNVNLDNTNVRPLEVFM 172 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 172 (193)
+|++++++|+.+..++....... ..+.|+++|+||+|+.......+.......... +.+.. .++ ......+++
T Consensus 82 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~---~~~-~~~~~~~~e 156 (191)
T d2ngra_ 82 FSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK---LAR-DLKAVKYVE 156 (191)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH---HHH-HTTCSCEEE
T ss_pred cccchHHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHH---HHH-HcCCCeEEE
Confidence 99999999999987777665543 357999999999998633211111111010000 00000 000 002246899
Q ss_pred EeeecCCChhHHHHhhhhh
Q 029453 173 CSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 173 ~Sa~~~~gi~~~~~~i~~~ 191 (193)
|||++|.|++++|+.+...
T Consensus 157 ~SAk~~~~V~e~f~~l~~~ 175 (191)
T d2ngra_ 157 CSALTQKGLKNVFDEAILA 175 (191)
T ss_dssp CCTTTCTTHHHHHHHHHHH
T ss_pred EeCCCCcCHHHHHHHHHHH
Confidence 9999999999999988754
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1e-28 Score=169.44 Aligned_cols=156 Identities=20% Similarity=0.273 Sum_probs=118.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce--eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS--EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
-+||+++|.+|||||||++++.++++.. +.+|.+... ..+..++ ..+.+|||||++.+...+..++++++++++|
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 3799999999999999999999988764 445555443 3444444 5777899999999999989999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEe
Q 029453 95 IDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCS 174 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (193)
+|.++++++.....++...... .....|++++++|.|+.......+....+... ..+++++||
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~----------------~~~~~~~~S 144 (166)
T d1g16a_ 82 YDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALAKE----------------LGIPFIESS 144 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHHHH----------------HTCCEEECB
T ss_pred EECCCccCHHHHHhhhhhhhcc-ccCcceeeeecchhhhhhhhhhHHHHHHHHHh----------------cCCeEEEEC
Confidence 9999999998888877776543 33578899999999997543333322222211 124789999
Q ss_pred eecCCChhHHHHhhhhhc
Q 029453 175 IVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 175 a~~~~gi~~~~~~i~~~l 192 (193)
|++|.|++++|++|.+.+
T Consensus 145 a~~~~~v~e~f~~l~~~i 162 (166)
T d1g16a_ 145 AKNDDNVNEIFFTLAKLI 162 (166)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=5.9e-27 Score=161.81 Aligned_cols=154 Identities=17% Similarity=0.199 Sum_probs=115.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce-eEEEeCC--eEEEEEEcCChhhhHHhHHhhhccCCEEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTS-EELSIGK--IKFKAFDLGGHQMARRVWKDYYAKVDAVVYL 94 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 94 (193)
.+.+||+++|.+|||||||++++.++.+....++..... ..+..++ ..+.+||++|+..+. +++.+|++|+|
T Consensus 3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilV 77 (175)
T d2bmja1 3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFV 77 (175)
T ss_dssp CCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEE
Confidence 467999999999999999999999998876655554433 2345555 678999999987643 56779999999
Q ss_pred EeCCChhhHHHHHHHHHHHHh--CCCCCCCcEEEEeeCCCCCC----CCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 95 IDAYDKERFSESKRELDALLS--DEALADVPFLILGNKIDIPY----AASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~--~~~~~~~pviiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+|++++++|+.+..|+..+.. .....+.|+++|+||.|+.. ..+.++....... . ..+
T Consensus 78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~-~---------------~~~ 141 (175)
T d2bmja1 78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCAD-M---------------KRC 141 (175)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHT-S---------------TTE
T ss_pred eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHH-h---------------CCC
Confidence 999999999998888777643 23446789999999999752 2223333222111 1 336
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++|||++|.|++++|..|.+.+
T Consensus 142 ~~~e~SAk~~~~v~~~F~~l~~~i 165 (175)
T d2bmja1 142 SYYETCATYGLNVDRVFQEVAQKV 165 (175)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEeCCCCCcCHHHHHHHHHHHH
Confidence 899999999999999999987653
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=1.1e-27 Score=166.10 Aligned_cols=170 Identities=19% Similarity=0.282 Sum_probs=117.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCCCCcce-eEEEeC--CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQ-HQPTQYPTS-EELSIG--KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
+.||+++|.+|||||||++++..+.+.. +.+|..... .....+ ...+.+||++|++.+......+++.+|++++|+
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence 4699999999999999999999998774 445544322 233333 367889999999999888888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccEEEEEEee
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSI 175 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (193)
|++++++|+....++........ .+.|+++|+||+|+....................... ...++ ......+++|||
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~-~~~a~-~~~~~~y~E~SA 158 (179)
T d1m7ba_ 82 DISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQG-ANMAK-QIGAATYIECSA 158 (179)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH-HHHHH-HHTCSEEEECBT
T ss_pred ecccCCCHHHHHHHHHHHHhccC-CcceEEEEEecccccccchhhHHHhhhhcCcchHHHH-HHHHH-HhCCCeEEEEeC
Confidence 99999999998887777654433 5899999999999853211111111111000000000 00000 002257899999
Q ss_pred ecCC-ChhHHHHhhhhhc
Q 029453 176 VRKM-GYGEGFKWLSQYI 192 (193)
Q Consensus 176 ~~~~-gi~~~~~~i~~~l 192 (193)
++|. |++++|+.+...+
T Consensus 159 k~~~n~i~~~F~~~~~~~ 176 (179)
T d1m7ba_ 159 LQSENSVRDIFHVATLAC 176 (179)
T ss_dssp TTBHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 9998 5999999887643
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=1.4e-26 Score=160.41 Aligned_cols=154 Identities=21% Similarity=0.190 Sum_probs=109.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcccc--C--CCCCcceeEEEeCCeEEEEEEcCChhh--------hHHhHHhhhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQH--Q--PTQYPTSEELSIGKIKFKAFDLGGHQM--------ARRVWKDYYA 86 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~--~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 86 (193)
+...|+|+|.+|||||||+|++++.+.... . .|...........+..+.+|||||... +......++.
T Consensus 4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~ 83 (178)
T d1wf3a1 4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 83 (178)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccc
Confidence 455799999999999999999998764322 2 244455566777889999999999532 2333345678
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 87 KVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 87 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
.+|++++|+|++++.. ....++...++.. ..+.|+++|+||+|+... .++..+.+.... .
T Consensus 84 ~ad~il~v~D~~~~~~--~~~~~i~~~l~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~---------------~ 143 (178)
T d1wf3a1 84 DVNAVVWVVDLRHPPT--PEDELVARALKPL-VGKVPILLVGNKLDAAKY--PEEAMKAYHELL---------------P 143 (178)
T ss_dssp SCSEEEEEEETTSCCC--HHHHHHHHHHGGG-TTTSCEEEEEECGGGCSS--HHHHHHHHHHTS---------------T
T ss_pred cccceeeeechhhhhc--ccccchhhheecc-ccchhhhhhhcccccccC--HHHHHHHHHhhc---------------c
Confidence 9999999999988633 3334444444332 246899999999999642 233333322222 2
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...++++||++|.|+++++++|.+.+
T Consensus 144 ~~~~~~iSA~~~~gi~~L~~~i~~~l 169 (178)
T d1wf3a1 144 EAEPRMLSALDERQVAELKADLLALM 169 (178)
T ss_dssp TSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred cCceEEEecCCCCCHHHHHHHHHHhC
Confidence 24678999999999999999998875
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.93 E-value=3.9e-26 Score=158.28 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=108.6
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccccCC----------CCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhcc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQHQP----------TQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAK 87 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~----------t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 87 (193)
.+.++|+++|++|||||||+|+|.+.......+ +.......+...+..+.++|+||+..+.......+..
T Consensus 3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~ 82 (179)
T d1wb1a4 3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 82 (179)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence 477899999999999999999998644322111 2223344556678899999999999998888888999
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|++++|+|++++...+. ...+ ..+.. .++|+++|+||+|+............+.... ... .....
T Consensus 83 ~d~~ilv~d~~~g~~~~~-~~~~-~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~-~~~--------~~~~~ 148 (179)
T d1wb1a4 83 IDLALIVVDAKEGPKTQT-GEHM-LILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSIL-QST--------HNLKN 148 (179)
T ss_dssp CCEEEEEEETTTCSCHHH-HHHH-HHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHH-HHS--------SSGGG
T ss_pred ccccccccccccccchhh-hhhh-hhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHH-HHh--------hcCCC
Confidence 999999999998633222 2222 22222 4789999999999975432221111111000 000 01134
Q ss_pred EEEEEEeeecCCChhHHHHhhhhhc
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+++++||++|+|++++++.|.+.+
T Consensus 149 ~~iv~iSA~~g~gi~eL~~~I~~~l 173 (179)
T d1wb1a4 149 SSIIPISAKTGFGVDELKNLIITTL 173 (179)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEEEccCCcCHHHHHHHHHhcC
Confidence 6889999999999999999998764
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=5.8e-25 Score=149.53 Aligned_cols=145 Identities=23% Similarity=0.307 Sum_probs=109.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCcceeEEEeCCeEEEEEEcCChhh--------h-HHhHHhhhcc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQH----QPTQYPTSEELSIGKIKFKAFDLGGHQM--------A-RRVWKDYYAK 87 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~--------~-~~~~~~~~~~ 87 (193)
+||+++|.+|||||||+|+|.+.+.... ..+.......+...+..+.+|||||... . .......+..
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 80 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence 5899999999999999999987764322 2244556677888999999999999321 1 1222334678
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCcc
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRP 167 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
+|++++|+|++++...... .....+ ...++++++||+|+......+++...+....
T Consensus 81 ad~ii~v~d~~~~~~~~~~-~~~~~~------~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~----------------- 136 (160)
T d1xzpa2 81 ADIVLFVLDASSPLDEEDR-KILERI------KNKRYLVVINKVDVVEKINEEEIKNKLGTDR----------------- 136 (160)
T ss_dssp CSEEEEEEETTSCCCHHHH-HHHHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHTCST-----------------
T ss_pred CCEEEEEEeCCCCcchhhh-hhhhhc------ccccceeeeeeccccchhhhHHHHHHhCCCC-----------------
Confidence 9999999999987644322 222222 3678999999999998888888777775443
Q ss_pred EEEEEEeeecCCChhHHHHhhhh
Q 029453 168 LEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 168 ~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
+++++||++|.|+++++++|.+
T Consensus 137 -~~~~vSA~~g~gi~~L~~~I~k 158 (160)
T d1xzpa2 137 -HMVKISALKGEGLEKLEESIYR 158 (160)
T ss_dssp -TEEEEEGGGTCCHHHHHHHHHH
T ss_pred -cEEEEECCCCCCHHHHHHHHHh
Confidence 6799999999999999999875
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=7.7e-25 Score=149.05 Aligned_cols=148 Identities=19% Similarity=0.209 Sum_probs=106.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--cCC--CCCcceeEEEeCCeEEEEEEcCChhhh--------HHhHHhhhccC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQ--HQP--TQYPTSEELSIGKIKFKAFDLGGHQMA--------RRVWKDYYAKV 88 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~~ 88 (193)
+||+++|++|||||||+|++.+..... ..+ +.......+...+..+.++|+||.... ......++..+
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA 81 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence 799999999999999999999776442 222 333445567788899999999994321 12223456789
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|++++++|..+...+.....+...+... ..+.|+++|+||+|+...... ... ....
T Consensus 82 d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~iilv~NK~Dl~~~~~~--------~~~--------------~~~~ 137 (161)
T d2gj8a1 82 DRVLFMVDGTTTDAVDPAEIWPEFIARL--PAKLPITVVRNKADITGETLG--------MSE--------------VNGH 137 (161)
T ss_dssp SEEEEEEETTTCCCCSHHHHCHHHHHHS--CTTCCEEEEEECHHHHCCCCE--------EEE--------------ETTE
T ss_pred cccceeeccccccchhhhhhhhhhhhhc--ccccceeeccchhhhhhhHHH--------HHH--------------hCCC
Confidence 9999999999876555555443333222 247899999999998542111 000 1346
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|+++++++|.+.+
T Consensus 138 ~~~~iSAk~~~gi~~L~~~l~~~l 161 (161)
T d2gj8a1 138 ALIRLSARTGEGVDVLRNHLKQSM 161 (161)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhC
Confidence 899999999999999999998764
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=7.1e-25 Score=150.77 Aligned_cols=149 Identities=17% Similarity=0.185 Sum_probs=98.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc----cCCCCCcceeEEEeCCeEEEEEEcCChh---------hhHHhHHhhhccC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ----HQPTQYPTSEELSIGKIKFKAFDLGGHQ---------MARRVWKDYYAKV 88 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~~~~ 88 (193)
+|+++|++|||||||+|+|.+..... ...|.......+......+.++|++|.. .........+..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence 69999999999999999999876542 1225555667778888999999999832 1233334456789
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 89 DAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 89 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
|++++++|.++.... ....+...++. .++|+++|+||+|+.+....+...+...... .
T Consensus 82 d~i~~~~~~~~~~~~--~~~~~~~~l~~---~~~pviiv~NK~Dl~~~~~~~~~~~~~~~~~-----------------~ 139 (171)
T d1mkya1 82 DLVLFVVDGKRGITK--EDESLADFLRK---STVDTILVANKAENLREFEREVKPELYSLGF-----------------G 139 (171)
T ss_dssp SEEEEEEETTTCCCH--HHHHHHHHHHH---HTCCEEEEEESCCSHHHHHHHTHHHHGGGSS-----------------C
T ss_pred cEEEEeecccccccc--ccccccccccc---ccccccccchhhhhhhhhhhHHHHHHHhcCC-----------------C
Confidence 999999999875432 22223333322 4789999999999863222111222221111 2
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|+++++++|.+.+
T Consensus 140 ~~i~iSAk~g~gid~L~~~i~~~l 163 (171)
T d1mkya1 140 EPIPVSAEHNINLDTMLETIIKKL 163 (171)
T ss_dssp SCEECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEEEecCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998765
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=1.8e-24 Score=151.96 Aligned_cols=166 Identities=19% Similarity=0.285 Sum_probs=126.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
+++||+++|.+|||||||++++..+.+ .+.||.+.....+......+.+||++|++.+...+..++..++++++++|.+
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~-~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 79 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTS-SCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCC-CCCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeecc
Confidence 578999999999999999999988876 4668999888888999999999999999999999999999999999999998
Q ss_pred Chh----------hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHH--------------HHhhCCCc
Q 029453 99 DKE----------RFSESKRELDALLSDEALADVPFLILGNKIDIPY----AASEDEL--------------RYHMGLTN 150 (193)
Q Consensus 99 ~~~----------~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~----~~~~~~~--------------~~~~~~~~ 150 (193)
+.. .+.+....+..++......+.|+++++||+|+.. ....... .......+
T Consensus 80 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 159 (200)
T d2bcjq2 80 EYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMF 159 (200)
T ss_dssp GGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHH
T ss_pred chhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHH
Confidence 653 3455566677777666667899999999999841 1111110 11100000
Q ss_pred cccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 151 FTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.. ......+.+.++++||++|.|++++|+.|.+.+
T Consensus 160 -~~------~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I 194 (200)
T d2bcjq2 160 -VD------LNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 194 (200)
T ss_dssp -HT------TCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred -HH------hcccCCCceEEEEeEEEcCHhHHHHHHHHHHHH
Confidence 00 001112457889999999999999999887643
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=7e-25 Score=152.70 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=106.9
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCcc--ccC--CCCCcceeEEEeCCeEEEEEEcCChhhhH------------
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLV--QHQ--PTQYPTSEELSIGKIKFKAFDLGGHQMAR------------ 78 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~------------ 78 (193)
|..+..+||+|+|.+|||||||+|++++.... ... .+.......+...+..+.++|+||.....
T Consensus 3 p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 82 (186)
T d1mkya2 3 PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSN 82 (186)
T ss_dssp CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchh
Confidence 45567899999999999999999999987643 222 23344556677888999999999964322
Q ss_pred HhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHhhCCCccccCCC
Q 029453 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAA--SEDELRYHMGLTNFTTGKG 156 (193)
Q Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 156 (193)
......++.+|++++|+|++.+.. .....+...+.. .+.|+++|+||+|+.... ..+++.+.+.....
T Consensus 83 ~~~~~~~~~~dvii~v~d~~~~~~--~~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~----- 152 (186)
T d1mkya2 83 YRVVDSIEKADVVVIVLDATQGIT--RQDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLY----- 152 (186)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCG-----
T ss_pred HHHHHHHhcCCEEEEeecccccch--hhHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhc-----
Confidence 223345678999999999987632 222233333333 478999999999986332 22333333222110
Q ss_pred cccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 157 NVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....+++++||++|.|+++++++|.+.+
T Consensus 153 -------~~~~~~i~~vSa~~g~gv~~L~~~i~~~~ 181 (186)
T d1mkya2 153 -------FIDYSPLIFTSADKGWNIDRMIDAMNLAY 181 (186)
T ss_dssp -------GGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------ccCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 01235789999999999999999997754
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.91 E-value=1.7e-24 Score=151.54 Aligned_cols=164 Identities=19% Similarity=0.309 Sum_probs=120.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
+++||+++|..|||||||++++..+.+ +|.+.....+......+.+||++|++.+...+..+++.++++++|+|.+
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~ 76 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS 76 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHS----CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC----CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeec
Confidence 578999999999999999999976554 4555667788899999999999999999999999999999999999998
Q ss_pred ChhhH----------HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----C-------------CCHHHHHHhhCCCcc
Q 029453 99 DKERF----------SESKRELDALLSDEALADVPFLILGNKIDIPY----A-------------ASEDELRYHMGLTNF 151 (193)
Q Consensus 99 ~~~~~----------~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~----~-------------~~~~~~~~~~~~~~~ 151 (193)
+.+++ .+....+..++......+.|+++++||+|+.. . ....+........+
T Consensus 77 ~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f- 155 (195)
T d1svsa1 77 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQF- 155 (195)
T ss_dssp GGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHH-
T ss_pred ccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHH-
Confidence 76543 34556666666666667899999999999631 0 11111111111000
Q ss_pred ccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 152 TTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.. .......+.+.++++||+++.||+++|+.+.+.+
T Consensus 156 ~~-----~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~i 191 (195)
T d1svsa1 156 ED-----LNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 191 (195)
T ss_dssp HT-----TCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HH-----HhcccCCCcceeEEEEeECCHhHHHHHHHHHHHH
Confidence 00 0001122557888999999999999999987643
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=2.6e-24 Score=149.13 Aligned_cols=152 Identities=21% Similarity=0.258 Sum_probs=100.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc-C--CCCCcceeEEEe-CCeEEEEEEcCChhh-------hHHhHHhhhccCCE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQH-Q--PTQYPTSEELSI-GKIKFKAFDLGGHQM-------ARRVWKDYYAKVDA 90 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~-~--~t~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 90 (193)
.|+|+|.+|||||||+|+|.+...... . .+.......... .+..+.+|||||... ........+..+++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 599999999999999999987764321 1 233344433333 457899999999432 11223345678999
Q ss_pred EEEEEeCCChh--hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCCCccE
Q 029453 91 VVYLIDAYDKE--RFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTNVRPL 168 (193)
Q Consensus 91 ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (193)
+++++|..... .......++... .....++|+++|+||+|+......+++.+.+... ..
T Consensus 83 ~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~-----------------~~ 143 (180)
T d1udxa2 83 LLYVLDAADEPLKTLETLRKEVGAY--DPALLRRPSLVALNKVDLLEEEAVKALADALARE-----------------GL 143 (180)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHH--CHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTT-----------------TS
T ss_pred hhhhcccccccccchhhhhhhhhcc--ccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhc-----------------CC
Confidence 99999987642 222222233222 1111358999999999997544444444444322 24
Q ss_pred EEEEEeeecCCChhHHHHhhhhhc
Q 029453 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 169 ~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+++++||++|.|++++++.|.+.+
T Consensus 144 ~~~~iSA~tg~gid~L~~~i~~~l 167 (180)
T d1udxa2 144 AVLPVSALTGAGLPALKEALHALV 167 (180)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 789999999999999999997754
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=2e-22 Score=142.40 Aligned_cols=169 Identities=25% Similarity=0.338 Sum_probs=114.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeC---CeEEEEEEcCChhhhH-HhHHhhhccCCEEEEEEeC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIG---KIKFKAFDLGGHQMAR-RVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~-~~~~~~~~~~d~ii~v~d~ 97 (193)
+|+++|++|||||||++++.++.+....+|.+.+.....+. +..+.+||++|++.+. ..+..++..++++++|+|+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~ 81 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS 81 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence 69999999999999999999998887777777777666653 5789999999998875 4667778899999999999
Q ss_pred CChhhH-HHHHHHHHHHHhC--CCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCC----cccc-----------------
Q 029453 98 YDKERF-SESKRELDALLSD--EALADVPFLILGNKIDIPYAASEDELRYHMGLT----NFTT----------------- 153 (193)
Q Consensus 98 ~~~~~~-~~~~~~~~~~~~~--~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~----~~~~----------------- 153 (193)
++..+. .....++..++.. ....++|+++|+||+|++.....+++.+.+... ....
T Consensus 82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
T d2fh5b1 82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL 161 (207)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCS
T ss_pred ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhh
Confidence 987543 3444445444322 222468999999999998766666654433210 0000
Q ss_pred CCCcccCC-CCCCccEEEEEEeeecCCC------hhHHHHhhhh
Q 029453 154 GKGNVNLD-NTNVRPLEVFMCSIVRKMG------YGEGFKWLSQ 190 (193)
Q Consensus 154 ~~~~~~~~-~~~~~~~~~~~~Sa~~~~g------i~~~~~~i~~ 190 (193)
........ ........++++|+++|.| ++++-+||.+
T Consensus 162 ~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~ 205 (207)
T d2fh5b1 162 GKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 205 (207)
T ss_dssp SCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred cccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHH
Confidence 00000000 0011246899999999987 8888888865
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.90 E-value=2e-24 Score=150.01 Aligned_cols=153 Identities=19% Similarity=0.186 Sum_probs=96.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEEeCCeEEEEEEcCChh---------------hhHHhHHhhh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELSIGKIKFKAFDLGGHQ---------------MARRVWKDYY 85 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~---------------~~~~~~~~~~ 85 (193)
.|+++|++|||||||+|++.+.+.. ...+........+...+ +.++||||.. ..........
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~~~--~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKN--HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA 79 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEETT--EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccccccccc--ceecccCCceeccccccccccccchhhhhhhhhcc
Confidence 6899999999999999999987653 22222222233444443 5789999941 1122233446
Q ss_pred ccCCEEEEEEeCCChhhHHH---------HHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH--HHHHHhhCCCccccC
Q 029453 86 AKVDAVVYLIDAYDKERFSE---------SKRELDALLSDEALADVPFLILGNKIDIPYAASE--DELRYHMGLTNFTTG 154 (193)
Q Consensus 86 ~~~d~ii~v~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~ 154 (193)
+.+|++++|+|+........ ....+...+.. .++|+++|+||+|+...... ..+...+.....
T Consensus 80 ~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~--- 153 (184)
T d2cxxa1 80 KNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLS--- 153 (184)
T ss_dssp GGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGG---
T ss_pred cccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHHHHHHHHHHHhccccc---
Confidence 78999999999975422111 11122222222 47899999999998642211 113333333220
Q ss_pred CCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 155 KGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....++++||++|.|+++++++|.+.+
T Consensus 154 ----------~~~~~~~~vSA~~g~gi~~L~~~i~~~l 181 (184)
T d2cxxa1 154 ----------EIDKVFIPISAKFGDNIERLKNRIFEVI 181 (184)
T ss_dssp ----------GHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------ccCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 1234578999999999999999998765
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=5.1e-24 Score=149.77 Aligned_cols=165 Identities=20% Similarity=0.379 Sum_probs=115.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAY 98 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 98 (193)
+.+||+++|.+|||||||++++. ....+.||.+.....+......+.+||++|++.+...+..+++.++++++++|.+
T Consensus 1 r~iKivllG~~~vGKTsll~r~~--f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~ 78 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMR--IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSS 78 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH--HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETT
T ss_pred CeEEEEEECCCCCCHHHHHHHHh--cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcC
Confidence 45899999999999999999993 1225677999888899999999999999999999999999999999999999998
Q ss_pred Ch----------hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----C--------------CCHHHHHHhhCCCc
Q 029453 99 DK----------ERFSESKRELDALLSDEALADVPFLILGNKIDIPY----A--------------ASEDELRYHMGLTN 150 (193)
Q Consensus 99 ~~----------~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~----~--------------~~~~~~~~~~~~~~ 150 (193)
+. ..+.....++..++......+.|+++++||+|+.. . ...+...+.....+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f 158 (200)
T d1zcba2 79 EFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF 158 (200)
T ss_dssp CTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHH
T ss_pred CcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHH
Confidence 63 34566777788887766667899999999999741 0 11111111111111
Q ss_pred cccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 151 FTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
... ........+-++.+||+++.||+++|+.+.+.
T Consensus 159 -~~~-----~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~ 193 (200)
T d1zcba2 159 -RGK-----RRDQQQRPLYHHFTTAINTENIRLVFRDVKDT 193 (200)
T ss_dssp -HTT-----CSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred -HHh-----ccCCCCCceEEEEeeeeCcHHHHHHHHHHHHH
Confidence 100 00111244567789999999999999987654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.89 E-value=2.6e-23 Score=145.82 Aligned_cols=158 Identities=18% Similarity=0.110 Sum_probs=103.4
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCccc--cCC----CCCccee-----------------------EEEeCCeEEEE
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQ--HQP----TQYPTSE-----------------------ELSIGKIKFKA 68 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~--~~~----t~~~~~~-----------------------~~~~~~~~~~~ 68 (193)
+..++|+++|+.++|||||+++|.+..... ... |...... ........+.+
T Consensus 3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T d1kk1a3 3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence 567899999999999999999998643221 111 1111000 01112356899
Q ss_pred EEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH----HHH
Q 029453 69 FDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDE----LRY 144 (193)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~----~~~ 144 (193)
+|||||..|.......+..+|++++|+|+.++...+.....+..+... ...++++++||+|+.......+ +.+
T Consensus 83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~~ 159 (195)
T d1kk1a3 83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKE 159 (195)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHHH
Confidence 999999999998888899999999999998863222222222222111 2345888999999864322111 222
Q ss_pred hhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 145 HMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.+.... ...++++++||++|.|++++++.|.+++
T Consensus 160 ~~~~~~--------------~~~~~iIpiSA~~G~ni~~Ll~~I~~~i 193 (195)
T d1kk1a3 160 FIEGTV--------------AENAPIIPISALHGANIDVLVKAIEDFI 193 (195)
T ss_dssp HHTTST--------------TTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred Hhcccc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence 222111 1346899999999999999999998765
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=1.9e-23 Score=145.30 Aligned_cols=153 Identities=20% Similarity=0.235 Sum_probs=99.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--c-CCCCCcceeEEEe-CCeEEEEEEcCChhhhH-------HhHHhhhccCCE
Q 029453 22 KILFLGLDNSGKTTLLHMLKDERLVQ--H-QPTQYPTSEELSI-GKIKFKAFDLGGHQMAR-------RVWKDYYAKVDA 90 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~~~~--~-~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~ 90 (193)
+|+|+|++|||||||+|+|.+..... . ..|.........+ ++..+.+|||||..+.. ......+..++.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 82 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence 69999999999999999998766432 1 2255555655555 45689999999963211 112233567899
Q ss_pred EEEEEeCCChhhH--HH--HHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHHhhCCCccccCCCcccCCCCCC
Q 029453 91 VVYLIDAYDKERF--SE--SKRELDALLSDEALADVPFLILGNKIDIPYAASE-DELRYHMGLTNFTTGKGNVNLDNTNV 165 (193)
Q Consensus 91 ii~v~d~~~~~~~--~~--~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (193)
++++++....+.. .. ...............++|+++|+||+|+...... +.+.+.+.
T Consensus 83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~------------------ 144 (185)
T d1lnza2 83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT------------------ 144 (185)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC------------------
T ss_pred hhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhc------------------
Confidence 9998887643211 11 1111222222334457899999999999743211 22333222
Q ss_pred ccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 166 RPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 166 ~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
...+++++||++|.|+++++++|.+.+
T Consensus 145 ~~~~v~~iSA~~g~Gi~~L~~~i~~~L 171 (185)
T d1lnza2 145 DDYPVFPISAVTREGLRELLFEVANQL 171 (185)
T ss_dssp SCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 224678999999999999999998876
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.89 E-value=5e-23 Score=145.38 Aligned_cols=161 Identities=18% Similarity=0.138 Sum_probs=105.3
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccC--C----CCCc--ceeE--------------------------EE
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ--P----TQYP--TSEE--------------------------LS 60 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~--~----t~~~--~~~~--------------------------~~ 60 (193)
+..++.++|+++|+.++|||||+++|.+....... . +... .... ..
T Consensus 3 ~~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (205)
T d2qn6a3 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEP 82 (205)
T ss_dssp CCCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCC
T ss_pred CCCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccc
Confidence 45677899999999999999999999763321100 0 0000 0000 01
Q ss_pred eCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH
Q 029453 61 IGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASED 140 (193)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~ 140 (193)
...+.+.++|+|||..|.......+..+|++|+|+|+.++-. +........++... .-.|+++++||+|+.......
T Consensus 83 ~~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~-~~~t~e~~~~~~~~--~i~~iIV~vNK~Dl~~~~~~~ 159 (205)
T d2qn6a3 83 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP-QPQTREHFVALGII--GVKNLIIVQNKVDVVSKEEAL 159 (205)
T ss_dssp EEEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSS-CHHHHHHHHHHHHT--TCCCEEEEEECGGGSCHHHHH
T ss_pred cceEEEEEeccchHHHHHhhhhcceecccccccccccccccc-chhHHHHHHHHHHc--CCceeeeccccCCCccchHHH
Confidence 112578999999999998888888899999999999987621 12222222222221 235899999999997432222
Q ss_pred H----HHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 141 E----LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 141 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
+ +...+.... ...++++++||++|.|++++++.|.+++
T Consensus 160 ~~~~~~~~~l~~~~--------------~~~~p~ipiSA~~g~nI~~L~e~i~~~i 201 (205)
T d2qn6a3 160 SQYRQIKQFTKGTW--------------AENVPIIPVSALHKINIDSLIEGIEEYI 201 (205)
T ss_dssp HHHHHHHHHHTTST--------------TTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcccc--------------CCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence 2 222222211 2446899999999999999999998875
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.89 E-value=2.5e-23 Score=149.11 Aligned_cols=165 Identities=18% Similarity=0.167 Sum_probs=103.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCC---CCCcce------------------eEEEeCCeEEEEEEcCChhhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQP---TQYPTS------------------EELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~------------------~~~~~~~~~~~~~D~~g~~~~ 77 (193)
+.+.|+|+|.+++|||||++++.+........ +..... ..+..++..+.++|||||..|
T Consensus 4 r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f 83 (227)
T d1g7sa4 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (227)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence 45669999999999999999997543221100 111111 112345678999999999988
Q ss_pred HHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH---HHHHhhC-------
Q 029453 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASED---ELRYHMG------- 147 (193)
Q Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~---~~~~~~~------- 147 (193)
.......+..+|++|+|+|+.++- +.....+..++.. .++|+++|+||+|+....... .....+.
T Consensus 84 ~~~~~~~~~~~D~~ilVvda~~g~--~~~~~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~ 158 (227)
T d1g7sa4 84 TTLRKRGGALADLAILIVDINEGF--KPQTQEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ 158 (227)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCC--CHHHHHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred cccchhcccccceEEEEEecccCc--ccchhHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHH
Confidence 777777788899999999998752 2222222233322 478999999999987322110 0111110
Q ss_pred ---------------CCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 148 ---------------LTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 148 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
...+.. ........+....+++++||++|.|++++++.|..
T Consensus 159 ~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~ 214 (227)
T d1g7sa4 159 QKLDTKVYELVGKLHEEGFES--ERFDRVTDFASQVSIIPISAITGEGIPELLTMLMG 214 (227)
T ss_dssp HHHHHHHHHHHHHHHHTTCEE--EEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhh--hhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 000000 00011122345679999999999999999998865
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=7.2e-23 Score=143.48 Aligned_cols=155 Identities=18% Similarity=0.201 Sum_probs=93.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-cc--CCCCCcceeEEEeCCeEEEEEEcCChh-------------hhHHhHHhh
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QH--QPTQYPTSEELSIGKIKFKAFDLGGHQ-------------MARRVWKDY 84 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~-------------~~~~~~~~~ 84 (193)
++|+|+|.+|||||||+|+|.+.+.. .. .++.......... ...+.+.|++|.. .........
T Consensus 24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (195)
T d1svia_ 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITT 102 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccc-cccceEEEEEeeccccccccccchhhhHHhhhhcc
Confidence 48999999999999999999976532 22 1222222222222 2344566776621 111222234
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCCC
Q 029453 85 YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNTN 164 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (193)
...++++++|+|++++. ......+...+.. .++|+++|+||+|+.+....++..+.+....- .
T Consensus 103 ~~~~~~vi~viD~~~~~--~~~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~------------~ 165 (195)
T d1svia_ 103 REELKAVVQIVDLRHAP--SNDDVQMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN------------I 165 (195)
T ss_dssp CTTEEEEEEEEETTSCC--CHHHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT------------C
T ss_pred ccchhhhhhhhhccccc--ccccccccccccc---ccCcceechhhccccCHHHHHHHHHHHHHHhc------------c
Confidence 45679999999998753 2333333333333 47899999999998755554443333221110 0
Q ss_pred CccEEEEEEeeecCCChhHHHHhhhhhcC
Q 029453 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
Q Consensus 165 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~l~ 193 (193)
....+++++||++|.|+++++++|.+.+.
T Consensus 166 ~~~~~~~~~SA~~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 166 DPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred cCCCCEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 02357899999999999999999988763
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.87 E-value=9.5e-22 Score=137.31 Aligned_cols=163 Identities=16% Similarity=0.102 Sum_probs=107.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC-------cc--------ccCC----CCCcceeEEEeCCeEEEEEEcCChhhhH
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDER-------LV--------QHQP----TQYPTSEELSIGKIKFKAFDLGGHQMAR 78 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~-------~~--------~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (193)
++.++|+++|.+++|||||++++.+.. .. ..+. |.......+.+.++.+.++|||||..|.
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~ 80 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence 356899999999999999999986310 00 0011 2222334556678999999999999999
Q ss_pred HhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHHhhCCCccccCCCc
Q 029453 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASE-DELRYHMGLTNFTTGKGN 157 (193)
Q Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~ 157 (193)
......+..+|++++|+|+.++-. ........++... ...|+++++||+|+...... +.+..+.....-....
T Consensus 81 ~~~~~~~~~aD~allVVda~~G~~--~QT~~~~~~a~~~--~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~-- 154 (196)
T d1d2ea3 81 KNMITGTAPLDGCILVVAANDGPM--PQTREHLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGY-- 154 (196)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSC--HHHHHHHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHhhcCeEEEEEEcCCCCc--hhHHHHHHHHHHh--cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCC--
Confidence 888888999999999999998632 2223222222221 34679999999998643211 2222222211100000
Q ss_pred ccCCCCCCccEEEEEEeeecC----------CChhHHHHhhhhhc
Q 029453 158 VNLDNTNVRPLEVFMCSIVRK----------MGYGEGFKWLSQYI 192 (193)
Q Consensus 158 ~~~~~~~~~~~~~~~~Sa~~~----------~gi~~~~~~i~~~l 192 (193)
.....+++++||++| .|++++++.|.+++
T Consensus 155 ------~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i 193 (196)
T d1d2ea3 155 ------KGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (196)
T ss_dssp ------CTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred ------CcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence 013467899999998 59999999887764
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.86 E-value=8.5e-22 Score=140.51 Aligned_cols=171 Identities=16% Similarity=0.273 Sum_probs=125.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEe
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLID 96 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 96 (193)
+++.+||+++|.+|||||||++++..+. ..||.+.....+.+++..+.+||++|++.++..|..+++.++++++++|
T Consensus 3 ~k~~~KilllG~~~vGKTsll~~~~~~~---~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d 79 (221)
T d1azta2 3 YRATHRLLLLGAGESGKSTIVKQMRILH---VVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVA 79 (221)
T ss_dssp HHHSEEEEEECSTTSSHHHHHHHHHHHH---CCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEE
T ss_pred chhcCEEEEECCCCCCHHHHHHHHhcCC---cCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEE
Confidence 3567899999999999999999997554 3478888888899999999999999999999999999999999999999
Q ss_pred CCCh----------hhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC------CCCHHHHHHhhCCCcccc-CCC--c
Q 029453 97 AYDK----------ERFSESKRELDALLSDEALADVPFLILGNKIDIPY------AASEDELRYHMGLTNFTT-GKG--N 157 (193)
Q Consensus 97 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~------~~~~~~~~~~~~~~~~~~-~~~--~ 157 (193)
.++. .++.+....+..++......+.|+++++||+|+.. .....++...+....... +.. .
T Consensus 80 ~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g 159 (221)
T d1azta2 80 SSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPG 159 (221)
T ss_dssp TTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTT
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCC
Confidence 9752 34667778888888877778899999999999851 122222211211100000 000 0
Q ss_pred -------------------ccCCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 158 -------------------VNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 158 -------------------~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
........+.+-.+.+||.++.+++.+|+.+.+
T Consensus 160 ~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d 211 (221)
T d1azta2 160 EDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRD 211 (221)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHH
T ss_pred CchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHH
Confidence 000011124466788999999999999987654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=7e-21 Score=133.89 Aligned_cols=113 Identities=22% Similarity=0.219 Sum_probs=83.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCC--------cc-----cc-------CCCCCcceeEEEeCCeEEEEEEcCChhhh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDER--------LV-----QH-------QPTQYPTSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~--------~~-----~~-------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
++.++|+++|++++|||||+++|.... .. .. .-|.......+.+++..+.++|||||..|
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df 80 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 80 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence 356899999999999999999985210 00 00 12445556677889999999999999999
Q ss_pred HHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCC
Q 029453 78 RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPY 135 (193)
Q Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~ 135 (193)
.......+..+|++|+|+|+.++-..+. .....++.. .++| +++++||+|+..
T Consensus 81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt--~~~~~~~~~---~gi~~iiv~iNK~D~~~ 134 (204)
T d2c78a3 81 IKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ---VGVPYIVVFMNKVDMVD 134 (204)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHH---TTCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHH---cCCCeEEEEEEecccCC
Confidence 9988888999999999999988743332 222222222 3655 778899999864
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.82 E-value=1.5e-19 Score=128.31 Aligned_cols=153 Identities=17% Similarity=0.109 Sum_probs=98.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcc--c------------------------------c----CCCCCcceeEEEe
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLV--Q------------------------------H----QPTQYPTSEELSI 61 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~--~------------------------------~----~~t~~~~~~~~~~ 61 (193)
+..+||+++|..++|||||+++|+...-. . . ..+.......+..
T Consensus 7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 86 (222)
T d1zunb3 7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 86 (222)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence 46689999999999999999999521100 0 0 0011223345556
Q ss_pred CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCC-cEEEEeeCCCCCCCCCH-
Q 029453 62 GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADV-PFLILGNKIDIPYAASE- 139 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-pviiv~nK~Dl~~~~~~- 139 (193)
.++.+.++|+|||..|..........+|++++|+|+.++- .........++.. .++ .+++++||+|+......
T Consensus 87 ~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~--~~Qt~e~~~~~~~---~gv~~iiv~vNK~D~~~~~~~~ 161 (222)
T d1zunb3 87 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV--QTQTRRHSYIASL---LGIKHIVVAINKMDLNGFDERV 161 (222)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS--CHHHHHHHHHHHH---TTCCEEEEEEECTTTTTSCHHH
T ss_pred cceEEEEEeccchhhhhhhhccccccCceEEEEeccccCc--ccchHHHHHHHHH---cCCCEEEEEEEcccccccccee
Confidence 7789999999999999998888899999999999998863 2233333333333 354 48899999999743221
Q ss_pred -HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 140 -DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
++...++......... .....+++|+||.+|.|+.+
T Consensus 162 ~~~~~~~l~~~~~~~~~--------~~~~i~~IPiSA~~G~ni~~ 198 (222)
T d1zunb3 162 FESIKADYLKFAEGIAF--------KPTTMAFVPMSALKGDNVVN 198 (222)
T ss_dssp HHHHHHHHHHHHHTTTC--------CCSEEEEEECCTTTCTTTSS
T ss_pred hhhhHHHHhhhhHhhcc--------CCCceEEEEEEcccCccCCc
Confidence 1122222110000000 11347889999999999843
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1.8e-19 Score=124.07 Aligned_cols=151 Identities=16% Similarity=0.166 Sum_probs=96.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc--C-CCCCc-ceeEEEeCCeEEEEEEcCChhhhHHh--HH-------hhhcc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLVQH--Q-PTQYP-TSEELSIGKIKFKAFDLGGHQMARRV--WK-------DYYAK 87 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~~~--~-~t~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~--~~-------~~~~~ 87 (193)
-.|+|+|.+|||||||+|+|++.+.... . .+... .......+...+..+|++|....... .. .....
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 85 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhh
Confidence 3589999999999999999998775422 1 13333 33455566777888888874322111 11 11235
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHhhCCCccccCCCcccCCCCCCc
Q 029453 88 VDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS-EDELRYHMGLTNFTTGKGNVNLDNTNVR 166 (193)
Q Consensus 88 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
+++++++.|..+.. .....+...+. . ...|.++|+||+|+..... .......+.... .
T Consensus 86 ~~~~l~~~d~~~~~--~~~~~~~~~l~-~---~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~---------------~ 144 (179)
T d1egaa1 86 VELVIFVVEGTRWT--PDDEMVLNKLR-E---GKAPVILAVNKVDNVQEKADLLPHLQFLASQM---------------N 144 (179)
T ss_dssp EEEEEEEEETTCCC--HHHHHHHHHHH-S---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTS---------------C
T ss_pred cceeEEEEecCccc--hhHHHHHHHhh-h---ccCceeeeeeeeeccchhhhhhhHhhhhhhhc---------------C
Confidence 77888888877642 23333333343 2 4678999999999864321 111111111111 3
Q ss_pred cEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 167 PLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 167 ~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
..+++++||++|.|+++++++|.+++
T Consensus 145 ~~~~~~vSA~~g~gi~~L~~~i~~~l 170 (179)
T d1egaa1 145 FLDIVPISAETGLNVDTIAAIVRKHL 170 (179)
T ss_dssp CSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEeCcCCCCHHHHHHHHHHhC
Confidence 35789999999999999999998876
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=1.8e-19 Score=127.05 Aligned_cols=121 Identities=20% Similarity=0.274 Sum_probs=84.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhh----hccCCEEEEE
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDY----YAKVDAVVYL 94 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~----~~~~d~ii~v 94 (193)
.+++|+++|++|||||||+|+|.+.++... .|.......+..++..+.+||+||++.....+..+ ...++.++++
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~-tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 80 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCe-EEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceE
Confidence 567999999999999999999998876533 23344455556677889999999998765544433 4567899999
Q ss_pred EeCCC-hhhHHHHHHHHHHH---HhCCCCCCCcEEEEeeCCCCCCCCCHH
Q 029453 95 IDAYD-KERFSESKRELDAL---LSDEALADVPFLILGNKIDIPYAASED 140 (193)
Q Consensus 95 ~d~~~-~~~~~~~~~~~~~~---~~~~~~~~~pviiv~nK~Dl~~~~~~~ 140 (193)
+|+.+ ..++.....++..+ .......++|+++|+||+|+......+
T Consensus 81 vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~ 130 (209)
T d1nrjb_ 81 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 130 (209)
T ss_dssp EETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred EEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCcHH
Confidence 99875 33344444333222 222334689999999999998655443
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.76 E-value=7.8e-19 Score=125.14 Aligned_cols=155 Identities=17% Similarity=0.114 Sum_probs=96.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCc--c----------------------------c----cCCCCCcceeEEEeCCe
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERL--V----------------------------Q----HQPTQYPTSEELSIGKI 64 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~--~----------------------------~----~~~t~~~~~~~~~~~~~ 64 (193)
+.++|+++|+.++|||||+.+|+...- . . ...+.......+++++.
T Consensus 2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~ 81 (224)
T d1jnya3 2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 81 (224)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence 578999999999999999998852100 0 0 00122333455677889
Q ss_pred EEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHH-----HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCC
Q 029453 65 KFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFS-----ESKRELDALLSDEALADVPFLILGNKIDIPY-AAS 138 (193)
Q Consensus 65 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~-~~~ 138 (193)
.+.++|||||..|.......+.-+|++++|+|+.++-.-+ ........+.... ...++++++||+|+.. ...
T Consensus 82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~~~~~~~ 159 (224)
T d1jnya3 82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPPYD 159 (224)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSSTTC
T ss_pred eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh--CCCceEEEEEcccCCCcccc
Confidence 9999999999999999999999999999999999862111 1111112222111 2456899999999974 223
Q ss_pred HHH---HHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 139 EDE---LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 139 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
... ....+........ ......+++++||..|.|+.+
T Consensus 160 ~~~~~~v~~~i~~~~~~~~--------~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 160 EKRYKEIVDQVSKFMRSYG--------FNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp HHHHHHHHHHHHHHHHHTT--------CCCTTCEEEECBTTTTBTTTB
T ss_pred HHHHHHHHHHHHhHHHhcC--------CCcccCeEEEEEccCCCCccc
Confidence 222 2222211110000 011346889999999999854
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.76 E-value=2.6e-18 Score=124.92 Aligned_cols=124 Identities=17% Similarity=0.099 Sum_probs=89.7
Q ss_pred ccc-EEEEEcCCCCCHHHHHHHHhcC--Ccc------------c-------cCCCCCcceeEEEeCCeEEEEEEcCChhh
Q 029453 19 KEA-KILFLGLDNSGKTTLLHMLKDE--RLV------------Q-------HQPTQYPTSEELSIGKIKFKAFDLGGHQM 76 (193)
Q Consensus 19 ~~~-~i~i~G~~~~GKssl~~~l~~~--~~~------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (193)
+++ +|+++|+.|+|||||+.++... ... . ...|.......+.+++..+.++||||+..
T Consensus 4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~d 83 (276)
T d2bv3a2 4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVD 83 (276)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSS
T ss_pred hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhh
Confidence 455 5999999999999999998521 100 0 01144456678889999999999999999
Q ss_pred hHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHhhC
Q 029453 77 ARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAAS---EDELRYHMG 147 (193)
Q Consensus 77 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~---~~~~~~~~~ 147 (193)
|.......+.-+|++|+|+|+.++-..+ -...|.... . .++|.++++||+|...... .++++..++
T Consensus 84 F~~e~~~~l~~~D~avlVvda~~Gv~~~-T~~~w~~a~-~---~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~ 152 (276)
T d2bv3a2 84 FTIEVERSMRVLDGAIVVFDSSQGVEPQ-SETVWRQAE-K---YKVPRIAFANKMDKTGADLWLVIRTMQERLG 152 (276)
T ss_dssp CSTTHHHHHHHCCEEEEEEETTTSSCHH-HHHHHHHHH-T---TTCCEEEEEECTTSTTCCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHhhhheEEeccccCCcchh-HHHHHHHHH-H---cCCCEEEEEecccccccccchhHHHHHHHhC
Confidence 9988888899999999999999873222 233333332 3 5899999999999864322 234555554
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2.8e-18 Score=118.58 Aligned_cols=160 Identities=14% Similarity=0.138 Sum_probs=86.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCccccC---CCCCcc-eeEEEeCCeEEEEEEcCCh-h-------hhHHhH---
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQ---PTQYPT-SEELSIGKIKFKAFDLGGH-Q-------MARRVW--- 81 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~-~~~~~~~~~~~~~~D~~g~-~-------~~~~~~--- 81 (193)
..+.++|+++|.+|||||||+|++.+.+..... ++.... .......+......+.++. . ......
T Consensus 13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (188)
T d1puia_ 13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY 92 (188)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhh
Confidence 446799999999999999999999887654221 122222 2222333333333333321 1 111111
Q ss_pred HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCC
Q 029453 82 KDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLD 161 (193)
Q Consensus 82 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (193)
.........++.+.+...... ......+..... ...++++++||+|+..........+.+.... ..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l-~~-------- 158 (188)
T d1puia_ 93 LEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAV-LA-------- 158 (188)
T ss_dssp HHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHH-GG--------
T ss_pred hhhhhheeEEEEeecccccch-hHHHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHH-Hh--------
Confidence 112233455566666655432 222333333322 3678999999999874333332222222111 00
Q ss_pred CCCCccEEEEEEeeecCCChhHHHHhhhhhc
Q 029453 162 NTNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
Q Consensus 162 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~l 192 (193)
.....+++++||++|.|++++++.|.+.+
T Consensus 159 --~~~~~~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 159 --FNGDVQVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp --GCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --hCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence 01346899999999999999999998764
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.75 E-value=2.5e-18 Score=123.79 Aligned_cols=161 Identities=17% Similarity=0.109 Sum_probs=89.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCc--c----------------------------cc----CCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERL--V----------------------------QH----QPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~--~----------------------------~~----~~t~~~~~~~~~~~ 62 (193)
.++.++|+++|+.++|||||+.+|....- . .. ..+.......+.+.
T Consensus 21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~ 100 (245)
T d1r5ba3 21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 100 (245)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence 45678999999999999999999842110 0 00 01222233455667
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhH-----HHHHHHHHHHHhCCCCCCC-cEEEEeeCCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERF-----SESKRELDALLSDEALADV-PFLILGNKIDIPYA 136 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~-pviiv~nK~Dl~~~ 136 (193)
+..+.++|+|||..|..........+|++++|+|+.++..- .........++.. .++ ++++++||+|++..
T Consensus 101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~---~~i~~iiv~iNKmD~~~~ 177 (245)
T d1r5ba3 101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMDEPSV 177 (245)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTTSTTC
T ss_pred cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH---cCCCeEEEEEEcCCCCcc
Confidence 78999999999999998888888999999999999875211 1112222222222 244 58899999999743
Q ss_pred CC-HH---HHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHH
Q 029453 137 AS-ED---ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFK 186 (193)
Q Consensus 137 ~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 186 (193)
.. .+ ++.+++......-.- ......++++|+||++|+||.++++
T Consensus 178 ~~~e~~~~ei~~~l~~~l~~i~~------~~~~~~v~~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 178 QWSEERYKECVDKLSMFLRRVAG------YNSKTDVKYMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHC------CCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred chhHHHHHHHHHHHHHHHHHHhC------cCcccCCEEEEeeccCCCCcccchh
Confidence 32 22 222222211100000 0011357899999999999987643
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.75 E-value=4.2e-18 Score=123.53 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=81.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--ccc-------------------cCCCCCcceeEEEeCCeEEEEEEcCChhhhHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER--LVQ-------------------HQPTQYPTSEELSIGKIKFKAFDLGGHQMARRV 80 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~--~~~-------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (193)
+|+++|+.++|||||+.++.... ... ...|.......+.+++..+.++|||||..|...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e 83 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE 83 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence 58999999999999999985211 000 011334455678899999999999999999998
Q ss_pred HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 81 WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 81 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
....+.-+|++|+|+|+.++-..+. ...+.... . .++|.++++||+|..
T Consensus 84 ~~~al~~~D~avlvvda~~Gv~~~t-~~~~~~~~-~---~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 84 IRGALEAADAALVAVSAEAGVQVGT-ERAWTVAE-R---LGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHH-H---TTCCEEEEEECGGGC
T ss_pred hhhhhcccCceEEEeeccCCccchh-HHHHHhhh-h---ccccccccccccccc
Confidence 8889999999999999998643322 23333332 2 479999999999974
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=3.5e-18 Score=122.51 Aligned_cols=156 Identities=17% Similarity=0.054 Sum_probs=100.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcC--C-------------------cc-------------ccCCCCCcceeEEEeC
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDE--R-------------------LV-------------QHQPTQYPTSEELSIG 62 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~--~-------------------~~-------------~~~~t~~~~~~~~~~~ 62 (193)
.+.+++|+++|+.++|||||+.+++.. . .. ...-|.......+.+.
T Consensus 3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~ 82 (239)
T d1f60a3 3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 82 (239)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence 345689999999999999999998521 0 00 0112555566788889
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhH-----HHHHHHHHHHHhCCCCCCC-cEEEEeeCCCCCCC
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERF-----SESKRELDALLSDEALADV-PFLILGNKIDIPYA 136 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~-pviiv~nK~Dl~~~ 136 (193)
++.+.++|||||..|...+......+|++|+|+|+.++.-- +........+... .++ ++++++||+|+...
T Consensus 83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~---~gv~~iiv~iNKmD~~~~ 159 (239)
T d1f60a3 83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKW 159 (239)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTT
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH---cCCCeEEEEEECCCCCCC
Confidence 99999999999999999888889999999999999865210 1122222222222 245 48889999998743
Q ss_pred CCH--HHHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhH
Q 029453 137 ASE--DELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGE 183 (193)
Q Consensus 137 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 183 (193)
... ++....+....-.... ......++++|+..|.|+-+
T Consensus 160 d~~~~~~~~~el~~~l~~~~~--------~~~~i~~ipiSa~~G~ni~~ 200 (239)
T d1f60a3 160 DESRFQEIVKETSNFIKKVGY--------NPKTVPFVPISGWNGDNMIE 200 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC--------CGGGCCEEECCTTTCBTTTB
T ss_pred CHHHHHHHHHHHHHHHHhcCC--------CCCcEEEEEEEccCCCccee
Confidence 221 1222221111100010 01346788999999988743
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.61 E-value=8.2e-16 Score=117.97 Aligned_cols=160 Identities=13% Similarity=0.107 Sum_probs=90.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCcccc-------C-CCCCcceeEEEe-CCeEEEEEEcCChhhhHH-----hHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERLVQH-------Q-PTQYPTSEELSI-GKIKFKAFDLGGHQMARR-----VWKD 83 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~-------~-~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~ 83 (193)
+..++|+|+|.+|||||||+|.+.|...... . .|... ..... +...+.+|||||...... ....
T Consensus 54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~--~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~ 131 (400)
T d1tq4a_ 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER--HPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKM 131 (400)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC--EEEECSSCTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceee--eeeeccCCCeEEEEeCCCcccccccHHHHHHHh
Confidence 3578999999999999999999987543211 1 12222 22222 334588999999553221 1222
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC---------CCCCHHHHHHhhCCCccccC
Q 029453 84 YYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP---------YAASEDELRYHMGLTNFTTG 154 (193)
Q Consensus 84 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~---------~~~~~~~~~~~~~~~~~~~~ 154 (193)
.+..+|.++++.|..-. ......+..+. . .++|+++|+||+|.. .....++..+.+.......
T Consensus 132 ~~~~~d~~l~~~~~~~~---~~d~~l~~~l~-~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~- 203 (400)
T d1tq4a_ 132 KFYEYDFFIIISATRFK---KNDIDIAKAIS-M---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT- 203 (400)
T ss_dssp TGGGCSEEEEEESSCCC---HHHHHHHHHHH-H---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH-
T ss_pred hhhcceEEEEecCCCCC---HHHHHHHHHHH-H---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHH-
Confidence 35678988888775422 22223333333 2 378999999999963 1112222222221111000
Q ss_pred CCcccCCCCCCccEEEEEEeeec--CCChhHHHHhhhhhc
Q 029453 155 KGNVNLDNTNVRPLEVFMCSIVR--KMGYGEGFKWLSQYI 192 (193)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~--~~gi~~~~~~i~~~l 192 (193)
.........+++.+|..+ ..|+.++.+.|.+.+
T Consensus 204 -----l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L 238 (400)
T d1tq4a_ 204 -----FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 238 (400)
T ss_dssp -----HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred -----HHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHh
Confidence 000011334678888654 468999999887654
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.60 E-value=2.5e-14 Score=103.46 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=79.0
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCcceeEEEeCCeEEEEEEcCChhh-------hHHhHHhh-
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLVQH----QPTQYPTSEELSIGKIKFKAFDLGGHQM-------ARRVWKDY- 84 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~- 84 (193)
...+++|+++|.+|||||||+|.+++...... ..|...........+..+.++||||... .......+
T Consensus 29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~ 108 (257)
T d1h65a_ 29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 108 (257)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence 45789999999999999999999998775432 2255566677788899999999999421 11111111
Q ss_pred -hccCCEEEEEEeCCChh---hHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 85 -YAKVDAVVYLIDAYDKE---RFSESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 85 -~~~~d~ii~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
....+++++|++.+... .-......+...+.. .-..++++|+||+|+..
T Consensus 109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~--~~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK--GIWNKAIVALTHAQFSP 161 (257)
T ss_dssp TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECCSCCC
T ss_pred hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcch--hhhhCEEEEEECcccCC
Confidence 23578999999886531 112233344444321 12368999999999873
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=7.4e-15 Score=109.70 Aligned_cols=125 Identities=16% Similarity=0.165 Sum_probs=84.4
Q ss_pred CcccE-EEEEcCCCCCHHHHHHHHhc--CCcc----------cc---C----CCCCcceeEEEe----------------
Q 029453 18 QKEAK-ILFLGLDNSGKTTLLHMLKD--ERLV----------QH---Q----PTQYPTSEELSI---------------- 61 (193)
Q Consensus 18 ~~~~~-i~i~G~~~~GKssl~~~l~~--~~~~----------~~---~----~t~~~~~~~~~~---------------- 61 (193)
...+| |+|+|+.++|||||+.++.. +... .. + -|.......+.+
T Consensus 14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~ 93 (341)
T d1n0ua2 14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 93 (341)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccc
Confidence 45675 99999999999999999851 1100 00 0 022222222322
Q ss_pred CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC---CCCC
Q 029453 62 GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP---YAAS 138 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~---~~~~ 138 (193)
++..+.++|||||..|.......+.-+|++++|+|+.++-..+.... +..... .++|+++++||+|.. -...
T Consensus 94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~-~~~a~~----~~~p~i~viNKiDr~~~el~~~ 168 (341)
T d1n0ua2 94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQALG----ERIKPVVVINKVDRALLELQVS 168 (341)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCEEEEEEECHHHHHHTSCCC
T ss_pred cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHH-HHHHHH----cCCCeEEEEECcccccccHHhh
Confidence 34679999999999999888888999999999999998743333333 333333 479999999999975 3455
Q ss_pred HHHHHHhhC
Q 029453 139 EDELRYHMG 147 (193)
Q Consensus 139 ~~~~~~~~~ 147 (193)
.+++...++
T Consensus 169 ~~~~~~~l~ 177 (341)
T d1n0ua2 169 KEDLYQTFA 177 (341)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 566555543
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=3.4e-15 Score=111.23 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=90.4
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhc------CCcc--ccCCCCCc------------------ceeEEEe-------
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKD------ERLV--QHQPTQYP------------------TSEELSI------- 61 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~------~~~~--~~~~t~~~------------------~~~~~~~------- 61 (193)
+...+.++|+|+|+||||||||++++.. .+.. ...|+... ....++-
T Consensus 49 ~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~l 128 (327)
T d2p67a1 49 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHL 128 (327)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC----
T ss_pred hccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccccccccccccccccc
Confidence 4466899999999999999999999852 2211 11111100 0001110
Q ss_pred ----------------CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEE
Q 029453 62 ----------------GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFL 125 (193)
Q Consensus 62 ----------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi 125 (193)
.++++.+++|.|...... .....+|.+++|.+....+..+.....+.++ +=+
T Consensus 129 gg~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---------aDi 196 (327)
T d2p67a1 129 GGASQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGLMEV---------ADL 196 (327)
T ss_dssp -CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHHHHH---------CSE
T ss_pred ccchhhhhHHHHHHHhcCCCeEEEeeccccccch---hhhhccceEEEEecCCCchhhhhhchhhhcc---------ccE
Confidence 135667777776543222 2345699999999987776565555555555 228
Q ss_pred EEeeCCCCCCCCCHH----HHHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 126 ILGNKIDIPYAASED----ELRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 126 iv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+|+||+|+....... ++...+.... . ....+..+++.|||.+|.|++++++.|.+.
T Consensus 197 ~VvNKaD~~~~~~~~~~~~~~~~al~~~~--~--------~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~ 256 (327)
T d2p67a1 197 IVINKDDGDNHTNVAIARHMYESALHILR--R--------KYDEWQPRVLTCSALEKRGIDEIWHAIIDF 256 (327)
T ss_dssp EEECCCCTTCHHHHHHHHHHHHHHHHHSC--C--------SBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred EEEEeecccchHHHHHHHHHHHHHhhhcc--c--------CCCCCcceeEEEEeeCCCCHHHHHHHHHHH
Confidence 889999986432222 1222221111 0 011255689999999999999999999764
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.56 E-value=1.2e-15 Score=109.40 Aligned_cols=125 Identities=11% Similarity=0.046 Sum_probs=68.3
Q ss_pred eEEEEEEcCChhhhHHhHHh---hh--ccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q 029453 64 IKFKAFDLGGHQMARRVWKD---YY--AKVDAVVYLIDAYD---KERFSESKRELDALLSDEALADVPFLILGNKIDIPY 135 (193)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~---~~--~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~ 135 (193)
..+.++|+||+......... .. ...+.+++++|+.. +...............+ ...|.++++||+|+..
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~~~ 171 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLS 171 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCC
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeecccccc
Confidence 46889999998765332222 11 24678999999864 32222211111111111 3689999999999975
Q ss_pred CCCHHHHHHhhCCCcc-----ccCCC--------cccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 136 AASEDELRYHMGLTNF-----TTGKG--------NVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 136 ~~~~~~~~~~~~~~~~-----~~~~~--------~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
......+......... ..... ............+++++||++|+|+++++++|.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 172 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4333322211110000 00000 00000001134578999999999999999999873
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.52 E-value=4.9e-14 Score=104.79 Aligned_cols=155 Identities=14% Similarity=0.077 Sum_probs=93.8
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcC-----Ccc---ccCC----CC-------------C-cceeEEEe-------
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDE-----RLV---QHQP----TQ-------------Y-PTSEELSI------- 61 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~-----~~~---~~~~----t~-------------~-~~~~~~~~------- 61 (193)
+...+.++|+|.|+||||||||++++... ... ...| +. . .....++.
T Consensus 46 ~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~ 125 (323)
T d2qm8a1 46 PQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTL 125 (323)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSH
T ss_pred hccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccc
Confidence 45668899999999999999999998621 100 0000 00 0 00111111
Q ss_pred ----------------CCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEE
Q 029453 62 ----------------GKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFL 125 (193)
Q Consensus 62 ----------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi 125 (193)
.++++.+++|.|...-... ...-+|..++|.....++..+.....+.++ +=+
T Consensus 126 gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~---------aDi 193 (323)
T d2qm8a1 126 GGVAAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKGIFEL---------ADM 193 (323)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTTHHHH---------CSE
T ss_pred cchhHHHHHHHHhhccCCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhhHhhh---------hhe
Confidence 2578888899886543332 234499999999999886665555544444 239
Q ss_pred EEeeCCCCCCCCCHHH-----HHHhhCCCccccCCCcccCCCCCCccEEEEEEeeecCCChhHHHHhhhhh
Q 029453 126 ILGNKIDIPYAASEDE-----LRYHMGLTNFTTGKGNVNLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
Q Consensus 126 iv~nK~Dl~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 191 (193)
+|+||+|+........ +...+.... . ....+..+++.+||++|.|+++++++|.+.
T Consensus 194 ~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~--~--------~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~ 254 (323)
T d2qm8a1 194 IAVNKADDGDGERRASAAASEYRAALHILT--P--------PSATWTPPVVTISGLHGKGLDSLWSRIEDH 254 (323)
T ss_dssp EEEECCSTTCCHHHHHHHHHHHHHHHTTBC--C--------SBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred eeEeccccccchHHHHHHHHHHHHHhhccc--c--------cccCCCCceEEEEecCCCCHHHHHHHHHHH
Confidence 9999999864332221 222222221 0 111255689999999999999999999764
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.17 E-value=8.8e-11 Score=86.27 Aligned_cols=85 Identities=22% Similarity=0.366 Sum_probs=63.4
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHhcCCc--cccCC--CCCcceeEEEeCC-----------------eEEEEEEcCC
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLKDERL--VQHQP--TQYPTSEELSIGK-----------------IKFKAFDLGG 73 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~--~~~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g 73 (193)
.+...+++|+++|.|+||||||+|.+.+... ...+| |..++.+.+.... ..+.+.|.||
T Consensus 5 ~~~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaG 84 (296)
T d1ni3a1 5 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 84 (296)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccc
Confidence 3455789999999999999999999997643 34444 6678887776542 4788999998
Q ss_pred hhhh-------HHhHHhhhccCCEEEEEEeCCC
Q 029453 74 HQMA-------RRVWKDYYAKVDAVVYLIDAYD 99 (193)
Q Consensus 74 ~~~~-------~~~~~~~~~~~d~ii~v~d~~~ 99 (193)
.... ...+...++++|++++|+|+.+
T Consensus 85 Lv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 85 LTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp GCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccccccccccHHHHHHHhhccceeEEEEeccC
Confidence 3321 2234456789999999999854
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.15 E-value=7e-11 Score=86.06 Aligned_cols=78 Identities=21% Similarity=0.294 Sum_probs=56.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEEeCC-----------------eEEEEEEcCChhhh--
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELSIGK-----------------IKFKAFDLGGHQMA-- 77 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~-- 77 (193)
.+||+++|.|+||||||+|++++.... ..+| |..++.+.+.... ..+.++|.||.-..
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 469999999999999999999977644 3333 6677777776542 25889999994322
Q ss_pred -----HHhHHhhhccCCEEEEEEeC
Q 029453 78 -----RRVWKDYYAKVDAVVYLIDA 97 (193)
Q Consensus 78 -----~~~~~~~~~~~d~ii~v~d~ 97 (193)
...+...++++|++++|+|+
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~ 106 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRC 106 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred cCCCccHHHHHHHHhccceEEEeec
Confidence 12344567899999999987
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.12 E-value=2e-09 Score=78.93 Aligned_cols=114 Identities=15% Similarity=0.181 Sum_probs=69.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCcccc--CC-CCCcceeE-------------------------------------
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQH--QP-TQYPTSEE------------------------------------- 58 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~--~~-t~~~~~~~------------------------------------- 58 (193)
..++|+|+|..++|||||+|.+.+.++.+. .+ |..++...
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence 566899999999999999999998775322 12 22221111
Q ss_pred ------------E--EeC-CeEEEEEEcCChh-------------hhHHhHHhhhccCCEEE-EEEeCCChhhHHHHHHH
Q 029453 59 ------------L--SIG-KIKFKAFDLGGHQ-------------MARRVWKDYYAKVDAVV-YLIDAYDKERFSESKRE 109 (193)
Q Consensus 59 ------------~--~~~-~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~~~~~~~~~ 109 (193)
+ ... -..+.++|+||.. ........++...+.++ +|.++...-+......+
T Consensus 105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~ 184 (299)
T d2akab1 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence 0 011 1347899999932 12344556777777554 56666544333344444
Q ss_pred HHHHHhCCCCCCCcEEEEeeCCCCCCC
Q 029453 110 LDALLSDEALADVPFLILGNKIDIPYA 136 (193)
Q Consensus 110 ~~~~~~~~~~~~~pviiv~nK~Dl~~~ 136 (193)
...+ .. ...++++|+||+|+.+.
T Consensus 185 ~~~~-~~---~~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 185 AKEV-DP---QGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHH-CT---TCSSEEEEEECGGGSCT
T ss_pred HHHh-Cc---CCCceeeEEeccccccc
Confidence 4443 22 35789999999998743
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.11 E-value=6e-11 Score=88.06 Aligned_cols=78 Identities=21% Similarity=0.195 Sum_probs=44.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-ccCC--CCCcceeEEE------------------------eCCeEEEEEEcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERLV-QHQP--TQYPTSEELS------------------------IGKIKFKAFDLGG 73 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~------------------------~~~~~~~~~D~~g 73 (193)
.+|+++|.||||||||+|.+.+.... ..+| |..++.+... .....+.++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 48999999999999999999877643 3333 4444443221 1125689999999
Q ss_pred hhhhH----HhHH---hhhccCCEEEEEEeCC
Q 029453 74 HQMAR----RVWK---DYYAKVDAVVYLIDAY 98 (193)
Q Consensus 74 ~~~~~----~~~~---~~~~~~d~ii~v~d~~ 98 (193)
.-... .... ..++.+|++++|+|+.
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~ 112 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT 112 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETT
T ss_pred cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence 53321 1111 2356899999999986
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.08 E-value=7.1e-10 Score=81.67 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=41.5
Q ss_pred eEEEEEEcCChhh-------------hHHhHHhhhccCCEEEEEE-eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEee
Q 029453 64 IKFKAFDLGGHQM-------------ARRVWKDYYAKVDAVVYLI-DAYDKERFSESKRELDALLSDEALADVPFLILGN 129 (193)
Q Consensus 64 ~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~ii~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~n 129 (193)
..+.++|+||... .......|+..++.+++++ ++.....-.....+...+ .. ...++++|+|
T Consensus 131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~-~~---~~~r~i~Vit 206 (306)
T d1jwyb_ 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-DP---EGKRTIGVIT 206 (306)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-CS---SCSSEEEEEE
T ss_pred CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh-Cc---CCCeEEEEEe
Confidence 3578999999421 2345566788899866665 443322122233333333 22 3568999999
Q ss_pred CCCCCC
Q 029453 130 KIDIPY 135 (193)
Q Consensus 130 K~Dl~~ 135 (193)
|+|..+
T Consensus 207 k~D~~~ 212 (306)
T d1jwyb_ 207 KLDLMD 212 (306)
T ss_dssp CTTSSC
T ss_pred cccccc
Confidence 999874
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.76 E-value=4.7e-09 Score=75.97 Aligned_cols=60 Identities=20% Similarity=0.343 Sum_probs=39.4
Q ss_pred hCCCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcce--eEEEeCCeEEEEEEcCCh
Q 029453 14 LGLWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTS--EELSIGKIKFKAFDLGGH 74 (193)
Q Consensus 14 ~~~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~ 74 (193)
.....+.++++|+|.||||||||+|++.+.+...+.++.+.+. ..+.. +..+.++||||.
T Consensus 106 ~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~-~~~~~l~DTPGi 167 (273)
T d1puja_ 106 KGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGI 167 (273)
T ss_dssp TTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCC
T ss_pred ccCCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEEC-CCCeEEecCCCc
Confidence 3345678999999999999999999999988665444333322 22223 345889999993
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.59 E-value=1.5e-08 Score=73.26 Aligned_cols=88 Identities=19% Similarity=0.185 Sum_probs=64.9
Q ss_pred HhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcc
Q 029453 79 RVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNV 158 (193)
Q Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (193)
......++.+|++++|+|+.+|-+ .....+..++ .++|.++|+||+|+.+....+++.+.+....
T Consensus 7 r~i~~~i~~~DvIl~V~DaR~P~s--s~~~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~-------- 71 (273)
T d1puja_ 7 REVTEKLKLIDIVYELVDARIPMS--SRNPMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQG-------- 71 (273)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTT--TSCHHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTT--------
T ss_pred HHHHHHHHhCCEEEEEEECCCCCC--CCCHHHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHHhcC--------
Confidence 344567899999999999988733 2233445554 3689999999999987666666776665443
Q ss_pred cCCCCCCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 159 NLDNTNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 159 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
...+.+|++++.+..++.+.+.+
T Consensus 72 ---------~~~i~isa~~~~~~~~~~~~~~~ 94 (273)
T d1puja_ 72 ---------IRSLSINSVNGQGLNQIVPASKE 94 (273)
T ss_dssp ---------CCEEECCTTTCTTGGGHHHHHHH
T ss_pred ---------CccceeecccCCCccccchhhhh
Confidence 35688999999999988877654
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.52 E-value=3.8e-08 Score=68.55 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=34.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCC-----CCC----cceeEEEeCCeEEEEEEcCChhhh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQP-----TQY----PTSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~----~~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
....+++|++|||||||+|.+.++....+.. ..+ .....+.+.+. -.++||||...+
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g-g~iiDTPG~r~~ 160 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG-GYVVDTPGFANL 160 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS-CEEESSCSSTTC
T ss_pred CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC-cEEEeCCccccc
Confidence 3478999999999999999998765432211 111 11223333321 358899996544
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.45 E-value=3.9e-08 Score=68.48 Aligned_cols=87 Identities=17% Similarity=0.113 Sum_probs=58.4
Q ss_pred hccCCEEEEEEeCCChhh-HHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 85 YAKVDAVVYLIDAYDKER-FSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
..+.|.+++|+.+.+|+. ...+.+++..... .++|.++|+||+||......+.+........
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~------------- 70 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS------------- 70 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT-------------
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhcccc-------------
Confidence 467899999999887642 3334444444433 4899999999999975433333322221111
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
...+++.+|++++.|++++.+++..
T Consensus 71 --~~~~v~~vSa~~~~g~~~L~~~l~~ 95 (225)
T d1u0la2 71 --GLYPIVKTSAKTGMGIEELKEYLKG 95 (225)
T ss_dssp --TTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred --cceeEEEeccccchhHhhHHHHhcC
Confidence 1136899999999999999998854
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.36 E-value=4.2e-07 Score=63.46 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+-+.|.|.-|||||||++++...
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred CEEEEeeCCCCCHHHHHHHHHhc
Confidence 35688999999999999999754
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.28 E-value=4.2e-06 Score=57.55 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=19.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
...-|+++|++||||||.+-++.
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA 30 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLA 30 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45678899999999999998874
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.25 E-value=4.8e-07 Score=62.31 Aligned_cols=66 Identities=15% Similarity=0.056 Sum_probs=37.4
Q ss_pred CCeEEEEEEcCChhhh----HHhHHhh--hccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q 029453 62 GKIKFKAFDLGGHQMA----RRVWKDY--YAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFLILGNKIDIP 134 (193)
Q Consensus 62 ~~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~ 134 (193)
.+.++.++||+|.... ...+... ..+.+-+++|.|++..+ ........+.+... .--+++||.|..
T Consensus 91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~---~~~~~~~~f~~~~~----~~~~I~TKlDe~ 162 (207)
T d1ls1a2 91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEKVG----VTGLVLTKLDGD 162 (207)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH---HHHHHHHHHHHHTC----CCEEEEECGGGC
T ss_pred ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccch---hHHHHHHHHHhhCC----CCeeEEeecCcc
Confidence 3568899999993221 1111121 23578899999997763 22223333322111 224789999975
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.24 E-value=1.4e-07 Score=65.79 Aligned_cols=89 Identities=13% Similarity=0.093 Sum_probs=58.7
Q ss_pred hccCCEEEEEEeCCChhh-HHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHHhhCCCccccCCCcccCCCC
Q 029453 85 YAKVDAVVYLIDAYDKER-FSESKRELDALLSDEALADVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGNVNLDNT 163 (193)
Q Consensus 85 ~~~~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (193)
..+.|.+++|+++.+|+. ...+.+++.... . .+++.++|+||+||..+....+....+...+ ..
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~-~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y-~~---------- 72 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVE-A---NDIQPIICITKMDLIEDQDTEDTIQAYAEDY-RN---------- 72 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHH-T---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-HH----------
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHH-H---cCCCEEEEEecccccccHHHHHHHHHHHHHH-hh----------
Confidence 467899999999987642 334444444443 3 5889999999999975433333222222111 00
Q ss_pred CCccEEEEEEeeecCCChhHHHHhhhh
Q 029453 164 NVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
Q Consensus 164 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 190 (193)
...+++.+|++++.|++++.++|..
T Consensus 73 --~g~~v~~~Sa~~~~gl~~L~~~l~~ 97 (231)
T d1t9ha2 73 --IGYDVYLTSSKDQDSLADIIPHFQD 97 (231)
T ss_dssp --HTCCEEECCHHHHTTCTTTGGGGTT
T ss_pred --ccccceeeecCChhHHHHHHHhhcc
Confidence 1247899999999999999988754
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.22 E-value=2.3e-07 Score=64.76 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=32.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCCccccC-----------CCCCcceeEEEeCCeEEEEEEcCChhhh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDERLVQHQ-----------PTQYPTSEELSIGKIKFKAFDLGGHQMA 77 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (193)
+.-..+++|++|||||||+|.+.++....+. .|+.... +..++. .++||||...+
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l--~~~~gg--~iiDTPG~r~~ 161 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHTSGG--LVADTPGFSSL 161 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEETTE--EEESSCSCSSC
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEE--EecCCC--EEEECCccccc
Confidence 3447789999999999999999876533211 1222222 333432 47899996543
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.20 E-value=7.6e-06 Score=56.12 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=43.6
Q ss_pred CeEEEEEEcCChhhhH----HhHHh---hh-----ccCCEEEEEEeCCChh-hHHHHHHHHHHHHhCCCCCCCcEEEEee
Q 029453 63 KIKFKAFDLGGHQMAR----RVWKD---YY-----AKVDAVVYLIDAYDKE-RFSESKRELDALLSDEALADVPFLILGN 129 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~----~~~~~---~~-----~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~pviiv~n 129 (193)
+.++.++||+|..... ..+.. .. ...+-.++|+|++... ........+..+ + +--+++|
T Consensus 88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~-~~~lI~T 159 (207)
T d1okkd2 88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-------G-LTGVIVT 159 (207)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-------C-CSEEEEE
T ss_pred CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-------C-CceEEEe
Confidence 4678999999932211 11111 11 2457889999998653 233333333333 1 2256899
Q ss_pred CCCCC-CCCCHHHHHHhhCCC
Q 029453 130 KIDIP-YAASEDELRYHMGLT 149 (193)
Q Consensus 130 K~Dl~-~~~~~~~~~~~~~~~ 149 (193)
|.|.. +....-.+....+.+
T Consensus 160 KlDet~~~G~~l~~~~~~~~P 180 (207)
T d1okkd2 160 KLDGTAKGGVLIPIVRTLKVP 180 (207)
T ss_dssp CTTSSCCCTTHHHHHHHHCCC
T ss_pred ccCCCCCccHHHHHHHHHCCC
Confidence 99986 334444454444444
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.09 E-value=4.1e-06 Score=57.74 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=20.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.+++..|+++|++||||||.+-++.
T Consensus 8 ~~~p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 8 PEPPFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3466678999999999999987764
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.06 E-value=5.9e-06 Score=56.82 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=15.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
...-|+++|++||||||.+-++.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 44568889999999999987764
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.04 E-value=1.2e-06 Score=58.55 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.||+++|++|||||||++.+.+
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHh
Confidence 4899999999999999999875
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.82 E-value=4.1e-06 Score=55.98 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+|+|.|++|||||||+++|..
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999964
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.82 E-value=4.4e-06 Score=55.21 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
-++|+++|+|||||||+++.|..
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999853
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.78 E-value=7.1e-06 Score=54.30 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+..+|++.|++||||||+.+.|..
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 567999999999999999999864
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=8.7e-06 Score=53.59 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
-++|+|++|||||||++++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999974
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=2.7e-05 Score=55.79 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=39.3
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCcceeEEE-----e---CCeEEEEEEcCCh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKDERLV-QHQPTQYPTSEELS-----I---GKIKFKAFDLGGH 74 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~-----~---~~~~~~~~D~~g~ 74 (193)
.++-.-|+++|+.++|||+|+|++++.... ....+..+++..+. . .+..+.++||.|.
T Consensus 29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~ 95 (277)
T d1f5na2 29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL 95 (277)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccc
Confidence 345558899999999999999999987643 33333333322221 1 3467889999994
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.71 E-value=2e-05 Score=55.31 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.=+++|+|++|||||||++.+.+-.
T Consensus 28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 28 QGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34589999999999999999998754
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.70 E-value=2.4e-05 Score=54.42 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.=-++++|++|||||||++.+.+-.
T Consensus 31 Ge~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCcchhhHhccCCC
Confidence 3368999999999999999888744
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.70 E-value=2.9e-05 Score=52.91 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|+.|||||||++.+.+-.
T Consensus 28 ei~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 28 NVVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhccc
Confidence 368999999999999999998744
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.69 E-value=1.5e-05 Score=53.88 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=23.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+.++|+++|+|||||||+...|..
T Consensus 3 ~~r~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 3 SARLLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999999875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.66 E-value=3.5e-05 Score=54.45 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.=.++|+|++|||||||++.+.+-.
T Consensus 40 ~Ge~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 40 AGKTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhccc
Confidence 33489999999999999999998644
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.66 E-value=4.3e-05 Score=53.38 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=.++++|++|||||||++.+.+-.
T Consensus 30 e~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 368999999999999999998754
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.65 E-value=1.2e-05 Score=54.21 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.1
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+.+|+|+|++||||||+++.|..
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998853
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=3.9e-05 Score=53.60 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=27.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeE
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIK 65 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 65 (193)
.=-++++|++|||||||++.+.+-.. ++.+.+.+.+.+
T Consensus 31 Ge~~~iiG~sGsGKSTLl~~i~Gl~~--------p~sG~I~~~g~~ 68 (240)
T d3dhwc1 31 GQIYGVIGASGAGKSTLIRCVNLLER--------PTEGSVLVDGQE 68 (240)
T ss_dssp SCEEEEEESTTSSHHHHHHHHTTSSC--------CSEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCcc--------ccCCceEEcCeE
Confidence 34689999999999999999987442 344555555543
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.64 E-value=1.8e-05 Score=52.40 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.2
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHh
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
|...+..-|.++|++||||||+.+.|.
T Consensus 1 ~~~~~g~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 1 PRATQGFTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp CTTTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 345677889999999999999998875
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.64 E-value=1.5e-05 Score=53.69 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.+||+++|+|||||||.++.|..
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999863
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.63 E-value=3.6e-05 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-++++|++|||||||++.+.+-.
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 56899999999999999998754
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=3.5e-05 Score=54.38 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.=.++++|++|||||||++.+.+-.
T Consensus 39 ~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 39 PGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhccc
Confidence 34489999999999999999998644
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.60 E-value=2.5e-05 Score=54.81 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-.++++|++|||||||++.+.+-.
T Consensus 27 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34489999999999999999997644
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.60 E-value=4.4e-05 Score=53.32 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=-++++|++|||||||++.+.+-.
T Consensus 33 e~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 33 EFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 368999999999999999998754
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.60 E-value=1.9e-05 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=20.7
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+...|+|+|+|||||||++++|..
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999999864
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.59 E-value=1.8e-05 Score=52.77 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.||+|+|+|||||||+++.|..
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.58 E-value=5.2e-05 Score=50.92 Aligned_cols=26 Identities=35% Similarity=0.277 Sum_probs=22.5
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHh
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
....++-|+|.|++|||||||++.|.
T Consensus 18 ~~~~~~iIgI~G~~GSGKSTla~~L~ 43 (198)
T d1rz3a_ 18 KTAGRLVLGIDGLSRSGKTTLANQLS 43 (198)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 44567789999999999999999985
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.58 E-value=4.4e-05 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-++++|+.|||||||++.+.+-.
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999998754
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.57 E-value=1.9e-05 Score=51.00 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029453 23 ILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~ 42 (193)
|++.|+|||||||+++.+..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999864
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.56 E-value=2.2e-05 Score=52.44 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+|+|+|+|||||||+.+.|..
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999863
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.55 E-value=2.4e-05 Score=52.30 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.+|+|+|+|||||||+++.|..
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999864
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.54 E-value=2.4e-05 Score=52.32 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+|+|+|+|||||||+++.|..
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.52 E-value=3.9e-05 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-++++|++|||||||++.+.+-.
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999998754
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.51 E-value=2.4e-05 Score=51.48 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
-|++.|++||||||++++|..
T Consensus 4 lI~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999864
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=2.4e-05 Score=50.91 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.|.++|++||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=2.9e-05 Score=51.77 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 029453 21 AKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~ 41 (193)
.||+|+|+|||||||.++.|.
T Consensus 1 m~I~i~G~pGSGKsT~~~~La 21 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIM 21 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999885
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.49 E-value=6.5e-05 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
-++++|+.|||||||++.+.+-.
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHHCCC
Confidence 57999999999999999998754
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.49 E-value=2.4e-05 Score=51.57 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 029453 21 AKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~ 41 (193)
++|+++|++||||||+.+.+.
T Consensus 2 p~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 579999999999999998875
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.49 E-value=2.8e-05 Score=51.18 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029453 23 ILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~ 42 (193)
++|+|.+|||||||++++..
T Consensus 4 i~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 57999999999999999864
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=2.9e-05 Score=54.00 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
=-++++|++|||||||++.+.+-.
T Consensus 27 ei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 27 EFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 368999999999999999987544
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.48 E-value=4.9e-05 Score=53.14 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.=.++++|++|||||||++.+.+-.
T Consensus 31 Ge~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCc
Confidence 3478999999999999999998754
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=97.47 E-value=9e-05 Score=51.76 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDERL 45 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~~~ 45 (193)
=-++++|+.|||||||++.+.+-..
T Consensus 29 ei~glvG~nGaGKSTLl~~l~G~~~ 53 (238)
T d1vpla_ 29 EIFGLIGPNGAGKTTTLRIISTLIK 53 (238)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999987553
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.46 E-value=4e-05 Score=54.13 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=22.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.-+++|+|++|||||||++.+.+-.
T Consensus 43 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 68 (255)
T d2hyda1 43 KGETVAFVGMSGGGKSTLINLIPRFY 68 (255)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhcC
Confidence 44589999999999999999887643
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=3.8e-05 Score=50.93 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
.|.|+|++|+|||||+..+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~ 22 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58999999999999999986
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=4.4e-05 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
++.|+|+|+|||||||.+..+..
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998853
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=97.41 E-value=9.7e-05 Score=52.22 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
.=.++++|++|||||||++.+.+-.
T Consensus 28 GEi~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 28 GDVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCc
Confidence 3368999999999999999998744
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.41 E-value=4.8e-05 Score=52.37 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+++++|+|-|||||||||.+..|.
T Consensus 1 Mk~i~IaIdGp~GsGKgT~ak~La 24 (223)
T d1q3ta_ 1 MKTIQIAIDGPASSGKSTVAKIIA 24 (223)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 357889999999999999999986
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.41 E-value=0.00043 Score=48.46 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.-.|++.||||||||++++.+..
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHhh
Confidence 445699999999999999999875
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.38 E-value=4.7e-05 Score=54.59 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=22.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
+.=.++|+|++|||||||++.+.+-.
T Consensus 61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34479999999999999999998744
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.37 E-value=6e-05 Score=53.32 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=21.4
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+.+.-|++.|||||||||+++.+.+
T Consensus 29 ~~~P~~ilL~GpPGtGKT~la~~la~ 54 (273)
T d1gvnb_ 29 VESPTAFLLGGQPGSGKTSLRSAIFE 54 (273)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33444589999999999999999865
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.32 E-value=5.9e-05 Score=50.12 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
-|+|.|++||||||+++.+.
T Consensus 3 iI~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999884
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.31 E-value=6.1e-05 Score=49.99 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+..-|.++|+|||||||+++++..
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 556789999999999999999864
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.30 E-value=6e-05 Score=49.41 Aligned_cols=20 Identities=45% Similarity=0.745 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
+|+++|++||||||+.+.+.
T Consensus 2 ~I~liG~~GsGKsTi~k~La 21 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALA 21 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999885
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=4.5e-05 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
=-++++|+.|||||||++.+.+-
T Consensus 26 ei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 26 EILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp CEEECBCCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36899999999999999999874
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=9e-05 Score=50.69 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~ 41 (193)
++-|+|.|++||||||+.+.|.
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 5779999999999999999874
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.24 E-value=7.9e-05 Score=49.06 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
-|++.|++||||||+.+.+..
T Consensus 6 iI~l~G~~GsGKSTia~~La~ 26 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALAN 26 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999864
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=8.2e-05 Score=48.80 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=19.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..-+++.|++||||||+.+.+..
T Consensus 6 ~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34466799999999999999864
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.23 E-value=8.3e-05 Score=50.53 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.-|+++|.|||||||++++|..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999999863
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.23 E-value=8.6e-05 Score=49.83 Aligned_cols=21 Identities=43% Similarity=0.578 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
|+|+||+||||||+++++...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998654
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.21 E-value=0.00011 Score=49.48 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+-..|+|+|+|||||||++..|..
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 455799999999999999999864
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.20 E-value=9.4e-05 Score=49.36 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
=|+++||+||||||+++.+...
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999998643
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=97.19 E-value=0.00017 Score=50.14 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=20.8
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....+.|.||||+||||+++.+..
T Consensus 34 ~~~~~L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 34 VLDHVLLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHh
Confidence 345799999999999999999864
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=97.18 E-value=0.00025 Score=49.23 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCC-CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 5 DWFYGILVSLGL-WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..++.|...... ......+.+.||||+||||+++.+.+
T Consensus 19 ~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 19 QKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp HHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 344444433322 33456899999999999999999875
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.16 E-value=0.00013 Score=49.19 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+..-|.|+|+|||||||.+..|..
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999864
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=5.6e-05 Score=50.72 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+...|.++|++||||||+.+.|.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La 40 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALE 40 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 56688899999999999999985
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.13 E-value=0.00013 Score=48.14 Aligned_cols=20 Identities=30% Similarity=0.404 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
.|.++|++||||||+.+.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999985
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.11 E-value=0.00025 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
...+++.||||+||||+++.+...
T Consensus 52 ~~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 52 FRAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999753
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=0.00014 Score=48.41 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
|+|+||+|+||+||++++...
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999998743
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.09 E-value=0.00015 Score=48.85 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 029453 23 ILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~ 41 (193)
|+|+||+||||||+++.+.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~ 21 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLF 21 (190)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999885
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.08 E-value=0.00032 Score=48.42 Aligned_cols=35 Identities=26% Similarity=0.240 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 4 VDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+..+..|.... +...+.+.||+|+||||+++.+..
T Consensus 33 ~~~l~~~i~~~----~~~~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 33 VKRLKHYVKTG----SMPHLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp HHHHHHHHHHT----CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CCCeEEEECCCCCcHHHHHHHHHH
Confidence 45556665444 334699999999999999998865
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=97.08 E-value=0.00017 Score=48.35 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.++-|+|.|.+||||||+++.|..
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998854
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.06 E-value=0.00019 Score=47.03 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
-|.+.|++||||||+++.|..
T Consensus 5 iI~l~G~~GsGKsTva~~L~~ 25 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467779999999999999864
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.05 E-value=0.0005 Score=49.11 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=21.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
..+++=|+|.|.+|||||||...+.
T Consensus 24 ~~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 24 NKCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEeECCCCCCHHHHHHHHH
Confidence 4457899999999999999998763
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.05 E-value=0.00038 Score=48.87 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.2
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...-.++|.|++|+|||++++.+..
T Consensus 41 ~~~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 41 HHYPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999998864
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=97.04 E-value=0.00031 Score=49.62 Aligned_cols=38 Identities=21% Similarity=0.085 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCCCcccE-EEEEcCCCCCHHHHHHHHhc
Q 029453 5 DWFYGILVSLGLWQKEAK-ILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~-i~i~G~~~~GKssl~~~l~~ 42 (193)
.++...........+... +.+.|+||+|||++++.+..
T Consensus 30 ~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~ 68 (287)
T d1w5sa2 30 RIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK 68 (287)
T ss_dssp HHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHH
Confidence 344443333333333333 34569999999999999864
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=97.02 E-value=0.00024 Score=49.86 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+--+++.||+|+|||++++.+..
T Consensus 41 ~~~giLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 41 IPKGVLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEecCCCCChhHHHHHHHH
Confidence 334699999999999999999985
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.0004 Score=49.22 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+-+++++|+||+|||++++.+..
T Consensus 39 k~n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 39 KNNPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCcEEECCCCCcHHHHHHHHHH
Confidence 34889999999999999988764
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00019 Score=48.99 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029453 22 KILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~~ 43 (193)
=|+|+||+|||||||++.+...
T Consensus 4 livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999998643
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.0034 Score=43.37 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 4 VDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.++..+..+.. -.-.+.+.|++|+||||+++.+..
T Consensus 21 ~~~L~~~i~~~~---~~~~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 21 LTALANGLSLGR---IHHAYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp HHHHHHHHHTTC---CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---CCeeEEEECCCCCcHHHHHHHHHH
Confidence 556666654322 223488999999999999998753
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.0081 Score=40.54 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=20.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..-.-.+.+.|++|+||||++..+..
T Consensus 21 ~~l~h~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 21 GRGHHALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcCeEEEEECCCCCcHHHHHHHHHH
Confidence 33344599999999999999998754
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.00017 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+-.+.+.||||||||++++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHH
Confidence 34599999999999999999874
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.88 E-value=0.00026 Score=46.99 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=16.6
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 029453 23 ILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~ 41 (193)
|+|.|++||||||+++.+.
T Consensus 4 ivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4567999999999999985
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=96.88 E-value=0.00056 Score=46.07 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 4 VDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.|+..+..-+...-++--+++.||+++|||.|+..+..
T Consensus 37 ~~Fl~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 37 ITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp HHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHH
Confidence 344444333333445557899999999999999998753
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.86 E-value=0.00025 Score=47.65 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=23.3
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..++++-|+|-|..||||||+++.|..
T Consensus 5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 5 EGTQPFTVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 355777899999999999999999864
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.85 E-value=0.00063 Score=46.68 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 4 VDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+..+..|.... +...+.+.||+|+||||+++.+..
T Consensus 24 ~~~L~~~~~~~----~~~~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 24 IDRLQQIAKDG----NMPHMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp HHHHHHHHHSC----CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CCCeEEEECCCCCCchhhHHHHHH
Confidence 45556655432 334699999999999999998753
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.0004 Score=50.19 Aligned_cols=27 Identities=22% Similarity=0.112 Sum_probs=22.7
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHh
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
...+..+-|+|.|++||||||+.+.+.
T Consensus 75 ~~~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 75 NGQRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp C-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 345678999999999999999998874
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.82 E-value=0.016 Score=39.43 Aligned_cols=81 Identities=10% Similarity=-0.011 Sum_probs=49.7
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcEE-EEeeCCCCCCCCCHH-
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPFL-ILGNKIDIPYAASED- 140 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~Dl~~~~~~~- 140 (193)
..++.++|+|+.... .....+..+|.++++...+ ..++.........+.+ .+.|++ +|+|+.|........
T Consensus 111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~~~~~~~ 183 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSDRDIPPE 183 (237)
T ss_dssp GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCTTCCCHH
T ss_pred cCCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhh----hhhhhhhhhhcccccccchhhhH
Confidence 467889999875432 2334466799999998875 3345555555544432 356765 889999976433333
Q ss_pred HHHHhhCCCc
Q 029453 141 ELRYHMGLTN 150 (193)
Q Consensus 141 ~~~~~~~~~~ 150 (193)
..+..++...
T Consensus 184 ~~~~~~~~~~ 193 (237)
T d1g3qa_ 184 AAEDVMEVPL 193 (237)
T ss_dssp HHHHHHCSCE
T ss_pred HHHhhcCceE
Confidence 3444444433
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.78 E-value=0.00033 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.-.+++.||||||||.|++.+..
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhh
Confidence 35689999999999999999864
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.74 E-value=0.0009 Score=45.88 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhCCCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 4 VDWFYGILVSLGLWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+..++.|..... -..+.+.||+|+||||+++.+..
T Consensus 23 ~~~L~~~i~~~~----~~~lLl~Gp~G~GKttl~~~la~ 57 (227)
T d1sxjc2 23 ITTVRKFVDEGK----LPHLLFYGPPGTGKTSTIVALAR 57 (227)
T ss_dssp HHHHHHHHHTTC----CCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----CCeEEEECCCCCChhHHHHHHHH
Confidence 455666654332 23589999999999999999865
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.73 E-value=0.00042 Score=47.27 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+-|+|.|||||||+|....|..
T Consensus 4 piI~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3678889999999999999863
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.70 E-value=0.00048 Score=46.98 Aligned_cols=27 Identities=37% Similarity=0.348 Sum_probs=23.5
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHh
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
...++..-|.+.|.|||||||+.+.|.
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred HhCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 346678889999999999999999885
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.00075 Score=45.34 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+-++.++|+||+|||+++..+..
T Consensus 43 k~n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEecCCcccHHHHHHHHH
Confidence 34789999999999999988764
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=96.53 E-value=0.0013 Score=48.60 Aligned_cols=24 Identities=46% Similarity=0.479 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
++--+++.||||+|||+++..+.+
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCeEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999999864
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.50 E-value=0.0011 Score=45.59 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...+.+.||+|+||||+++.+..
T Consensus 33 ~~~lll~Gp~G~GKTtl~~~i~~ 55 (237)
T d1sxjd2 33 LPHMLFYGPPGTGKTSTILALTK 55 (237)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCChHHHHHHHHH
Confidence 34589999999999999998864
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.48 E-value=0.00074 Score=47.38 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
-.++|.|++|+|||||++++..
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHHH
Confidence 4688999999999999998753
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.45 E-value=0.0018 Score=47.11 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDER 44 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~~ 44 (193)
..+|+|.|++||||||+++.+...-
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEeeccccchHHHHHHhhhc
Confidence 3469999999999999999998543
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.00091 Score=45.45 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+-|+|+|..||||||+++.|..
T Consensus 4 ~iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCcCCHHHHHHHHHH
Confidence 5689999999999999998753
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.44 E-value=0.0011 Score=46.14 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
....+.+.||+|+||||+++.+..
T Consensus 32 ~~~~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 32 DLPHLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 344699999999999999998864
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.33 E-value=0.00062 Score=48.62 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=17.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.+.+-|+|.|.+||||||+.+.|.
T Consensus 2 ~k~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 2 KKHPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp TTSCEEEEESCC---CCTHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHH
Confidence 356679999999999999998763
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=96.30 E-value=0.003 Score=47.01 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=17.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 029453 21 AKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~ 41 (193)
-+++++|+||+|||++++.+.
T Consensus 44 ~n~llvG~~GvGKtaiv~~la 64 (387)
T d1qvra2 44 NNPVLIGEPGVGKTAIVEGLA 64 (387)
T ss_dssp CCCEEEECTTSCHHHHHHHHH
T ss_pred CCCeEECCCCCCHHHHHHHHH
Confidence 356899999999999987654
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.28 E-value=0.0013 Score=44.58 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+-|+|+|..||||||+++.+..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998753
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.24 E-value=0.0023 Score=44.94 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+-.+.+.||||+|||++++.+..
T Consensus 37 ~~~giLL~GppGtGKT~l~~ala~ 60 (258)
T d1e32a2 37 PPRGILLYGPPGTGKTLIARAVAN 60 (258)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceeEEecCCCCCchHHHHHHHH
Confidence 445699999999999999999876
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.09 E-value=0.018 Score=36.97 Aligned_cols=53 Identities=26% Similarity=0.211 Sum_probs=32.5
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcCCc---cccCCCCCcceeEEEeCCeEEEEEEc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDERL---VQHQPTQYPTSEELSIGKIKFKAFDL 71 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~ 71 (193)
.+..-|++-|+-|||||||++.+...-- ...+||..... ....++..+.=+|+
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~~-~Y~~~~~~i~H~Dl 86 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVE-EYNIAGKMIYHFDL 86 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEE-EEEETTEEEEEEEC
T ss_pred CCCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEEEE-eeccCCceEEEEEE
Confidence 4556799999999999999999864432 23455654432 22334444333344
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=96.08 E-value=0.02 Score=39.95 Aligned_cols=87 Identities=9% Similarity=0.044 Sum_probs=46.1
Q ss_pred CeEEEEEEcCChhhh-HHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCC-CH
Q 029453 63 KIKFKAFDLGGHQMA-RRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYAA-SE 139 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~-~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~~-~~ 139 (193)
..++.++|+|+.... ..........+|.++++... +..++.........+.......+.+ .-+++|+.+..... ..
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~~~~ 193 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELL 193 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHH
T ss_pred cCCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCccchh
Confidence 367889999864321 11122223457888877776 4444555444444332222223444 34788998875422 23
Q ss_pred HHHHHhhCCCc
Q 029453 140 DELRYHMGLTN 150 (193)
Q Consensus 140 ~~~~~~~~~~~ 150 (193)
+++.+.++...
T Consensus 194 ~~~~~~~~~~~ 204 (269)
T d1cp2a_ 194 DAFAKELGSQL 204 (269)
T ss_dssp HHHHHHHTCCE
T ss_pred hhhHhhcCCeE
Confidence 34666666554
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.08 E-value=0.0017 Score=43.71 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
-|+|-|..||||||+++.|.
T Consensus 2 lI~ieG~dGsGKST~~~~L~ 21 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLS 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999875
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.0035 Score=45.31 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029453 22 KILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~~ 42 (193)
.++++||+|+|||.|++.+..
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHh
Confidence 689999999999999999853
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.05 E-value=0.0015 Score=49.58 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~ 41 (193)
+.+|+++||+|||||-|++++.
T Consensus 49 ksNILliGPTGvGKTlLAr~LA 70 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLA 70 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred cccEEEECCCCCCHHHHHHHHH
Confidence 4489999999999999999985
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.96 E-value=0.0021 Score=43.19 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
+.--+.|.|+||+|||+|+.++...
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 4557889999999999999998643
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.91 E-value=0.005 Score=41.86 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
+.+.|++|+|||.|++.+...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999998753
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=95.88 E-value=0.0078 Score=42.37 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=22.6
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...++--+.+.|++++|||+|++.+..
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHHH
Confidence 345677889999999999999999754
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.0016 Score=44.91 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...|+|-|+.||||||+++.|..
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.83 E-value=0.0036 Score=44.09 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=22.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
....-|.+.|++|+|||++++.+.+.
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHH
Confidence 34556999999999999999998753
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.0027 Score=42.95 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 029453 23 ILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~ 41 (193)
|+|-|+.||||||+++.+.
T Consensus 5 IviEG~dGsGKsT~~~~L~ 23 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVV 23 (210)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7888999999999999875
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.79 E-value=0.0025 Score=45.25 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=20.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...-|+|.|++|+|||||+..+.+
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999998764
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.67 E-value=0.003 Score=43.35 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=21.3
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
-+.--+.|.|+||+|||+|+.++...
T Consensus 32 ~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 32 ETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp ESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35557889999999999999998643
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.65 E-value=0.0032 Score=43.48 Aligned_cols=25 Identities=36% Similarity=0.343 Sum_probs=20.8
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
-+.--+.|.|+||+|||+|.-++..
T Consensus 34 p~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 34 ETQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3455788999999999999998864
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=95.49 E-value=0.035 Score=39.13 Aligned_cols=87 Identities=9% Similarity=0.071 Sum_probs=42.9
Q ss_pred CeEEEEEEcCChhhhHHh-HHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCcE-EEEeeCCCCCCCC-CH
Q 029453 63 KIKFKAFDLGGHQMARRV-WKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVPF-LILGNKIDIPYAA-SE 139 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~-~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~Dl~~~~-~~ 139 (193)
.+++.++|+|+....... ..-....++.++.+... +..++......+..+.......+.++ .+|.|+.+..... ..
T Consensus 118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~~~~~ 196 (289)
T d2afhe1 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDREDELI 196 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHHHHH
T ss_pred cCCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhhHHHH
Confidence 467788888764321111 11112346666666554 34344444444444432222234454 3778998754321 13
Q ss_pred HHHHHhhCCCc
Q 029453 140 DELRYHMGLTN 150 (193)
Q Consensus 140 ~~~~~~~~~~~ 150 (193)
+++++.++...
T Consensus 197 ~~~~~~~g~~v 207 (289)
T d2afhe1 197 IALANKLGTQM 207 (289)
T ss_dssp HHHHHHHTSCE
T ss_pred HHHHHHcCCeE
Confidence 34566666554
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.00061 Score=45.52 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=16.0
Q ss_pred EEEcCCCCCHHHHHHHHh
Q 029453 24 LFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 24 ~i~G~~~~GKssl~~~l~ 41 (193)
+|+|+.||||||++..+.
T Consensus 28 vi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 28 TLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHSCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 567999999999999973
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.0041 Score=42.14 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=17.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
=|+|-|+.||||||+++.+.
T Consensus 5 lI~ieG~dGsGKsT~~~~L~ 24 (209)
T d1nn5a_ 5 LIVLEGVDRAGKSTQSRKLV 24 (209)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37788999999999888874
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.43 E-value=0.0028 Score=45.32 Aligned_cols=18 Identities=22% Similarity=0.556 Sum_probs=16.3
Q ss_pred EEEEcCCCCCHHHHHHHH
Q 029453 23 ILFLGLDNSGKTTLLHML 40 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l 40 (193)
-+++|+.||||||+++++
T Consensus 27 nvlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 27 TAIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EEEECCTTTCSTHHHHHH
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 368899999999999987
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.42 E-value=0.0049 Score=40.54 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 029453 21 AKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
.-|+|.|++|+||||++-.+...
T Consensus 15 ~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 15 LGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHc
Confidence 45899999999999999887653
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=95.40 E-value=0.0043 Score=45.77 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
...++.++||+|||||-+++++..
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCcceeeeCCCCccHHHHHHHHHh
Confidence 456799999999999999999853
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.38 E-value=0.0053 Score=40.38 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..-|+|.|++|+||||++-.+...
T Consensus 15 g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 345899999999999999888753
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=95.37 E-value=0.0046 Score=42.60 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.-|+|.|..||||||+++.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998853
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.37 E-value=0.0043 Score=46.39 Aligned_cols=24 Identities=33% Similarity=0.278 Sum_probs=20.5
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.+==|.|.|++||||||.+..+..
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~ 180 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQ 180 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hhceEEEEcCCCCCccHHHHHHhh
Confidence 344689999999999999999865
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.33 E-value=0.0025 Score=46.37 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
.+.+.|+||+|||++++++.
T Consensus 30 ~vLl~G~pG~GKT~lar~~~ 49 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALA 49 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHH
Confidence 69999999999999999885
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.25 E-value=0.0054 Score=42.11 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=21.7
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
..+.--+.|.|+||+|||+|+.++..
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 34666788999999999999999863
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.24 E-value=0.13 Score=34.50 Aligned_cols=81 Identities=6% Similarity=-0.037 Sum_probs=45.0
Q ss_pred CeEEEEEEcCChhhhHHhHHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCC-CCHH
Q 029453 63 KIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLIDAYDKERFSESKRELDALLSDEALADVP-FLILGNKIDIPYA-ASED 140 (193)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~Dl~~~-~~~~ 140 (193)
.+++.++|+|+..... ....+..+|.++++..... .++......+...... +.+ +-+++|+.+.... ...+
T Consensus 109 ~~D~viiD~~~~~~~~--~~~~l~~ad~v~~v~~~~~-~~~~~~~~~~~~~~~~----~~~~~~iv~N~~~~~~~~~~~~ 181 (232)
T d1hyqa_ 109 STDILLLDAPAGLERS--AVIAIAAAQELLLVVNPEI-SSITDGLKTKIVAERL----GTKVLGVVVNRITTLGIEMAKN 181 (232)
T ss_dssp TCSEEEEECCSSSSHH--HHHHHHHSSEEEEEECSSH-HHHHHHHHHHHHHHHH----TCEEEEEEEEEECTTTHHHHHH
T ss_pred ccceeeecccccccch--hHHHhhhhheeeeeccccc-cchhhhhhhhhhhhhc----ccccccccccccccccccchhh
Confidence 3567888998754322 2234556999999988743 3344444433333221 333 5578899875322 2233
Q ss_pred HHHHhhCCCc
Q 029453 141 ELRYHMGLTN 150 (193)
Q Consensus 141 ~~~~~~~~~~ 150 (193)
++++.++.+.
T Consensus 182 ~i~~~~~~~~ 191 (232)
T d1hyqa_ 182 EIEAILEAKV 191 (232)
T ss_dssp HHHHHTTSCE
T ss_pred hHHhhcCCeE
Confidence 4666565544
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.08 E-value=0.0067 Score=41.76 Aligned_cols=24 Identities=33% Similarity=0.192 Sum_probs=20.6
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.--+.|.|+||+|||+|..++..
T Consensus 36 ~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 36 SMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445788999999999999999864
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.0065 Score=41.72 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.-|+|=|..||||||+++.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3588999999999999999864
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=95.04 E-value=0.0066 Score=43.87 Aligned_cols=20 Identities=45% Similarity=0.740 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029453 23 ILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~ 42 (193)
+++.|+||+|||.+++.+.+
T Consensus 126 ~l~~G~pG~GKT~la~ala~ 145 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGE 145 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 44579999999999999864
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=95.03 E-value=0.011 Score=42.66 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=19.5
Q ss_pred Cccc-EEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEA-KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~-~i~i~G~~~~GKssl~~~l~ 41 (193)
.+.. .++++||+|+|||.+++.+.
T Consensus 50 ~kp~~~~lf~Gp~G~GKt~lak~la 74 (315)
T d1qvra3 50 NRPIGSFLFLGPTGVGKTELAKTLA 74 (315)
T ss_dssp SSCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred CCCceEEEEECCCcchHHHHHHHHH
Confidence 3444 67888999999999999875
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.97 E-value=0.0075 Score=36.90 Aligned_cols=27 Identities=11% Similarity=-0.092 Sum_probs=23.8
Q ss_pred CCCCcccEEEEEcCCCCCHHHHHHHHh
Q 029453 15 GLWQKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 15 ~~~~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
|+.++.+.|.+.|.+|+|||++.+.+.
T Consensus 1 Pr~kqgf~i~~tg~~~~gk~~ia~al~ 27 (122)
T d1g8fa3 1 PRPKQGFSIVLGNSLTVSREQLSIALL 27 (122)
T ss_dssp CGGGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred CCCccceEEEEeCCCCCCHHHHHHHHH
Confidence 356788999999999999999999884
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.93 E-value=0.0063 Score=45.20 Aligned_cols=19 Identities=21% Similarity=0.531 Sum_probs=16.7
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 029453 23 ILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~ 41 (193)
-+|+|+.|||||+++.++.
T Consensus 28 ~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 28 TSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3588999999999999973
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.92 E-value=0.038 Score=38.70 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
..-=+-+.|++++|||+|+-++.
T Consensus 56 ~g~itei~G~~~sGKT~l~l~~~ 78 (268)
T d1xp8a1 56 RGRITEIYGPESGGKTTLALAIV 78 (268)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CceEEEEecCCccchHHHHHHHH
Confidence 44467789999999999998875
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.92 E-value=0.0084 Score=39.13 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
..-|+|.|++|+||||+.-.+...
T Consensus 15 g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHc
Confidence 346899999999999999777543
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.91 E-value=0.0076 Score=41.21 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.2
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.--+.|.|++|+|||+|+.++..
T Consensus 33 ~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 33 SQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 444678999999999999999864
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.52 E-value=0.011 Score=41.51 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=18.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 029453 20 EAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.=-++|.|+||+|||+|+..+.
T Consensus 35 G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 35 GEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 3347799999999999988875
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.45 E-value=0.011 Score=39.99 Aligned_cols=20 Identities=50% Similarity=0.642 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
=|+|=|.-||||||+++.|.
T Consensus 5 ~I~iEG~DGsGKST~~~~L~ 24 (214)
T d1tmka_ 5 LILIEGLDRTGKTTQCNILY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 48899999999999999875
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.43 E-value=0.012 Score=39.92 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.0
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHh
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
.+.--+.|.|++|+|||+|+.++.
T Consensus 24 ~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 24 PIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHH
Confidence 456678899999999999997764
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=94.36 E-value=0.0094 Score=43.27 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=22.7
Q ss_pred CcccEEEEEcCCCCCHHHHHHHHhcC
Q 029453 18 QKEAKILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 18 ~~~~~i~i~G~~~~GKssl~~~l~~~ 43 (193)
++-.+|.|=|+-||||||+++.+...
T Consensus 3 m~~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 3 MGVLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999998754
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=94.26 E-value=0.01 Score=42.46 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=13.9
Q ss_pred EEEEEcCCCCCHHHHH
Q 029453 22 KILFLGLDNSGKTTLL 37 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~ 37 (193)
.+.|.|++||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4889999999999765
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=94.23 E-value=0.0082 Score=42.56 Aligned_cols=16 Identities=38% Similarity=0.449 Sum_probs=13.6
Q ss_pred EEEEEcCCCCCHHHHH
Q 029453 22 KILFLGLDNSGKTTLL 37 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~ 37 (193)
.+.|.|+||+||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 3789999999999764
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=93.84 E-value=0.02 Score=41.48 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.3
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+-.+|.|=|+-||||||+++.+..
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~~ 28 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMAS 28 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHS
T ss_pred ceEEEEEECCccCCHHHHHHHHHH
Confidence 346899999999999999999875
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=93.79 E-value=0.016 Score=41.98 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
-.+|.|=|+-||||||+++.+..
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC
T ss_pred ceEEEEECCcCCCHHHHHHHHHH
Confidence 35799999999999999999864
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.64 E-value=0.023 Score=40.26 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=20.9
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.=|++|+|++|+|||+|+..+..
T Consensus 42 rGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 42 RGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp TTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCeeeEeCCCCCCHHHHHHHHHH
Confidence 445999999999999999988865
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=93.56 E-value=0.021 Score=39.77 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
-..|.|++|+|||+|+-.+.
T Consensus 31 ~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 31 VGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 46799999999999998874
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=93.36 E-value=0.021 Score=42.61 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 029453 21 AKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~ 41 (193)
-.++|+|.+|+|||+++..+.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHH
Confidence 359999999999999987664
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.25 E-value=0.12 Score=36.07 Aligned_cols=89 Identities=13% Similarity=-0.023 Sum_probs=47.4
Q ss_pred CCCcccEEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcceeEEEeCCeEEEEEEcCChhhhHHhHHhhhccCCEEEEEE
Q 029453 16 LWQKEAKILFLGLDNSGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQMARRVWKDYYAKVDAVVYLI 95 (193)
Q Consensus 16 ~~~~~~~i~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 95 (193)
.....--+.+.|++++|||+|+-++..... -.+.....+|+.+--.........+. .|-+ +++
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q---------------~~g~~~vyIDtE~~~~~e~a~~~GvD-~d~i-l~~ 118 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQ---------------AAGGVAAFIDAEHALDPDYAKKLGVD-TDSL-LVS 118 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHH---------------HTTCEEEEEESSCCCCHHHHHHHTCC-GGGC-EEE
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHh---------------cCCCEEEEEECCccCCHHHHHHhCCC-HHHe-EEe
Confidence 344555678899999999999977763211 01234456788873222222222222 2322 344
Q ss_pred eCCChhhHHHHHHHHHHHHhCCCCCCCcEEEEe
Q 029453 96 DAYDKERFSESKRELDALLSDEALADVPFLILG 128 (193)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~ 128 (193)
.... .++....+..+... +.+.++|+
T Consensus 119 ~~~~---~E~~~~~~~~l~~~----~~~~liIi 144 (269)
T d1mo6a1 119 QPDT---GEQALEIADMLIRS----GALDIVVI 144 (269)
T ss_dssp CCSS---HHHHHHHHHHHHHT----TCEEEEEE
T ss_pred cCCC---HHHHHHHHHHHHhc----CCCCEEEE
Confidence 4433 45555666666543 33445554
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=92.47 E-value=0.038 Score=40.45 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=16.0
Q ss_pred cEEEEEcCCCCCHHHHHHH
Q 029453 21 AKILFLGLDNSGKTTLLHM 39 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~ 39 (193)
--.+|.|+||+|||+++..
T Consensus 164 ~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 164 RISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp SEEEEECCTTSTHHHHHHH
T ss_pred CeEEEEcCCCCCceehHHH
Confidence 4678899999999998754
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.31 E-value=0.064 Score=36.71 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029453 22 KILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l~ 41 (193)
-+.|.|+..+||||+++++.
T Consensus 43 ~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 43 MLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEeccCchhhHHHHHHHH
Confidence 36899999999999999974
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=91.16 E-value=0.065 Score=36.96 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=20.9
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHh
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
......|.|.|++|+||+.+++.+-
T Consensus 20 a~~~~pvlI~Ge~GtGK~~~A~~ih 44 (247)
T d1ny5a2 20 SCAECPVLITGESGVGKEVVARLIH 44 (247)
T ss_dssp TTCCSCEEEECSTTSSHHHHHHHHH
T ss_pred hCCCCCEEEECCCCcCHHHHHHHHH
Confidence 3445578999999999999999874
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.16 E-value=0.077 Score=37.22 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 029453 21 AKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 21 ~~i~i~G~~~~GKssl~~~l~~ 42 (193)
=|++++|.+|+|||+|+..+..
T Consensus 69 Qr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 69 GKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEeeCCCCCCHHHHHHHHHH
Confidence 3899999999999999888764
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.05 E-value=0.071 Score=37.18 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=19.4
Q ss_pred cccEEEEEcCCCCCHHHHHHHHh
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~ 41 (193)
..--+.|.|++|+|||+|+-++.
T Consensus 53 ~g~itei~G~~gsGKTtl~l~~~ 75 (263)
T d1u94a1 53 MGRIVEIYGPESSGKTTLTLQVI 75 (263)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEecCCCcHHHHHHHHHH
Confidence 44567899999999999998875
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=90.87 E-value=0.077 Score=36.04 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 029453 23 ILFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~ 41 (193)
+.+.||..+||||+++++.
T Consensus 38 ~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEESCSSSSHHHHHHHHH
T ss_pred EEEECCCccccchhhhhhH
Confidence 7899999999999999874
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.62 E-value=0.13 Score=36.15 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=20.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Q 029453 19 KEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 19 ~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
+.=|++++|.+|+|||+++..+..
T Consensus 67 ~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 67 RGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEeecCCCCChHHHHHHHHH
Confidence 344899999999999999877654
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=87.61 E-value=0.22 Score=32.50 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029453 23 ILFLGLDNSGKTTLLHMLKDE 43 (193)
Q Consensus 23 i~i~G~~~~GKssl~~~l~~~ 43 (193)
+.|+|.+.||||.++.++...
T Consensus 2 iLVtGGarSGKS~~AE~l~~~ 22 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCccHHHHHHHHHhc
Confidence 589999999999999998753
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=87.54 E-value=0.19 Score=33.21 Aligned_cols=26 Identities=23% Similarity=0.093 Sum_probs=22.2
Q ss_pred CCcccEEEEEcCCCCCHHHHHHHHhc
Q 029453 17 WQKEAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
......+.+-|++|+|||+++..+..
T Consensus 12 ~~~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 12 KSEGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp TCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHH
Confidence 33567999999999999999988764
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=87.45 E-value=0.14 Score=31.28 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=16.6
Q ss_pred ccEE-EEEcCCCCCHHHHHHHHh
Q 029453 20 EAKI-LFLGLDNSGKTTLLHMLK 41 (193)
Q Consensus 20 ~~~i-~i~G~~~~GKssl~~~l~ 41 (193)
.+++ .+.+++|+|||.++-.+.
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH
Confidence 4444 668999999999886554
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=86.72 E-value=0.24 Score=32.63 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=17.3
Q ss_pred cEEEEEcCC-CCCHHHHHHHH
Q 029453 21 AKILFLGLD-NSGKTTLLHML 40 (193)
Q Consensus 21 ~~i~i~G~~-~~GKssl~~~l 40 (193)
.|+.|.|-. |+||||+.--|
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~L 22 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCAL 22 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHH
Confidence 488999995 99999998766
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=86.16 E-value=0.23 Score=34.57 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=15.7
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 029453 22 KILFLGLDNSGKTTLLHML 40 (193)
Q Consensus 22 ~i~i~G~~~~GKssl~~~l 40 (193)
-|.+.|..|+||||+.-.+
T Consensus 10 ~i~~sGKGGVGKTTvaa~l 28 (296)
T d1ihua1 10 YLFFTGKGGVGKTSISCAT 28 (296)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCcChHHHHHHHH
Confidence 4678999999999977665
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=85.04 E-value=0.17 Score=35.37 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=19.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 029453 20 EAKILFLGLDNSGKTTLLHMLKD 42 (193)
Q Consensus 20 ~~~i~i~G~~~~GKssl~~~l~~ 42 (193)
.=|++|+|.+|+|||+|+..+..
T Consensus 67 GQr~~Ifg~~g~GKt~l~~~~~~ 89 (276)
T d1fx0a3 67 GQRELIIGDRQTGKTAVATDTIL 89 (276)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHH
T ss_pred CceEeeccCCCCChHHHHHHHHh
Confidence 34789999999999999977543
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=84.58 E-value=0.3 Score=33.69 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=15.8
Q ss_pred cccEEE-EEcCCCCCHHHHHHHH
Q 029453 19 KEAKIL-FLGLDNSGKTTLLHML 40 (193)
Q Consensus 19 ~~~~i~-i~G~~~~GKssl~~~l 40 (193)
+..+|. +.|..|+||||+.-.+
T Consensus 18 ~~~~iii~sGKGGVGKTT~a~nL 40 (279)
T d1ihua2 18 NEHGLIMLMGKGGVGKTTMAAAI 40 (279)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 344554 4599999999986555
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=84.41 E-value=0.21 Score=35.46 Aligned_cols=14 Identities=57% Similarity=0.963 Sum_probs=12.6
Q ss_pred EEEcCCCCCHHHHH
Q 029453 24 LFLGLDNSGKTTLL 37 (193)
Q Consensus 24 ~i~G~~~~GKssl~ 37 (193)
++.|.+|+|||||-
T Consensus 18 lfFGLSGTGKTTLs 31 (313)
T d2olra1 18 VFFGLSGTGKTTLS 31 (313)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEEccCCCCcccce
Confidence 68899999999965
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=83.89 E-value=0.23 Score=35.38 Aligned_cols=15 Identities=53% Similarity=0.882 Sum_probs=13.0
Q ss_pred EEEEcCCCCCHHHHH
Q 029453 23 ILFLGLDNSGKTTLL 37 (193)
Q Consensus 23 i~i~G~~~~GKssl~ 37 (193)
-++.|.+|+|||||-
T Consensus 17 alffGLSGTGKTTLs 31 (318)
T d1j3ba1 17 AVFFGLSGTGKTTLS 31 (318)
T ss_dssp EEEEECTTSCHHHHT
T ss_pred EEEEccCCCCccccc
Confidence 478899999999965
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=83.38 E-value=0.22 Score=30.09 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=15.9
Q ss_pred CCcccEEEEEcCCCCCHHHHH
Q 029453 17 WQKEAKILFLGLDNSGKTTLL 37 (193)
Q Consensus 17 ~~~~~~i~i~G~~~~GKssl~ 37 (193)
.++.-++.+.+++|+|||..+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 345667788899999999433
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=83.27 E-value=0.38 Score=29.83 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=13.7
Q ss_pred EEEcCCCCCHHH-HHHHH
Q 029453 24 LFLGLDNSGKTT-LLHML 40 (193)
Q Consensus 24 ~i~G~~~~GKss-l~~~l 40 (193)
.++||=.||||| |++++
T Consensus 6 ~i~GpMfsGKTteLi~~~ 23 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRL 23 (139)
T ss_dssp EEECSTTSCHHHHHHHHH
T ss_pred EEEccccCHHHHHHHHHH
Confidence 468999999999 55554
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.22 E-value=0.3 Score=34.82 Aligned_cols=15 Identities=53% Similarity=0.886 Sum_probs=13.2
Q ss_pred EEEEcCCCCCHHHHH
Q 029453 23 ILFLGLDNSGKTTLL 37 (193)
Q Consensus 23 i~i~G~~~~GKssl~ 37 (193)
-++.|.+|+|||||-
T Consensus 17 alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 17 TVFFGLSGTGKTTLS 31 (323)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEccCCCCcccce
Confidence 358999999999986
|