Citrus Sinensis ID: 029463

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MRSPQSLHNGDTPSPLPRIPHFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRVACFIINGSRFHL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mrspqslhngdtpsplpriphfqstLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLtnsrgsnsprwydydafRFVFAANAIVAIYSLFEMGVSVWEisrgatffpEVLQVWFDFGHDQVFAYLLLSADSAGTELARTlkgtdtctAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRVACFIingsrfhl
Flexible Loop (DISEMBL)
mrspqslhngdtpsplpriPHFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRVACFIINGSRFHL
Low Complexity Region (SEG)
MRSPQSLHNGDTPSPLPRIPHFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRVACFIINGSRFHL
Disordered region (IsUnstruct)
************************TLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRVACFIING*****
Disordered Region (DISOPRED)
***********************************SLILVFRLAAFCFSLASSIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRVACFIINGSRFH*
Disordered Region (DISEMBL)
************PSPLPRIPHFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRVACFIINGSRFHL
Disordered Region (DISPRO)
********************HFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRVACFIINGSRFHL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSPQSLHNGDTPSPLPRIPHFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRVACFIINGSRFHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
B9HTK2	186	CASP-like protein POPTRDR	yes	no	0.958	0.994	0.757	9e-79
B9HMF8	186	CASP-like protein POPTRDR	no	no	0.963	1.0	0.709	2e-74
Q9M2U0	194	CASP-like protein At3g553	yes	no	0.994	0.989	0.694	2e-69
B9SR15	192	CASP-like protein RCOM_04	N/A	no	0.968	0.973	0.757	2e-68
A9STU1	199	CASP-like protein PHYPADR	N/A	no	0.870	0.844	0.442	1e-36
A9T836	191	CASP-like protein PHYPADR	N/A	no	0.911	0.921	0.440	2e-32
A9S848	191	CASP-like protein PHYPADR	N/A	no	0.911	0.921	0.413	2e-31
P0DI23	221	CASP-like protein PtaqCon	N/A	no	0.740	0.647	0.439	4e-28
Q2QNE3	182	CASP-like protein LOC_Os1	yes	no	0.761	0.807	0.433	3e-15
A9RZ57	373	CASP-like protein PHYPADR	N/A	no	0.860	0.445	0.268	1e-11

>sp|B9HTK2|CSPLI_POPTR CASP-like protein POPTRDRAFT_822486 OS=Populus trichocarpa GN=POPTRDRAFT_822486 PE=3 SV=1

 Score =  292 bits (748), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 147/194 (75%), Positives = 166/194 (85%), Gaps = 9/194 (4%)

Query: 1   MRSPQSLHNG-DTPSPLPRIPHFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTN 59
           MRSPQ   +G DT        HFQST+SVQKL+RFNSLILVFR AAFCFSLAS++FMLTN
Sbjct: 1   MRSPQPHRSGGDTQ------QHFQSTVSVQKLKRFNSLILVFRFAAFCFSLASAVFMLTN 54

Query: 60  SRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHD 119
           SRGS+S  WY++DAFR+VFAANAIVAIYSLFEM  SVWEISR AT FPE+ QVWFDFGHD
Sbjct: 55  SRGSDSLHWYNFDAFRYVFAANAIVAIYSLFEMAASVWEISRNATLFPEICQVWFDFGHD 114

Query: 120 QVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGF 179
           QVFAYLLLSA++AGTELARTLK  DTCT   AFC+QSDI++ LGFAGFLF+G+SSL SGF
Sbjct: 115 QVFAYLLLSANTAGTELARTLK--DTCTDNKAFCVQSDIAIVLGFAGFLFLGISSLFSGF 172

Query: 180 RVACFIINGSRFHL 193
           RV CFIINGSRF++
Sbjct: 173 RVVCFIINGSRFYV 186

Populus trichocarpa (taxid: 3694)

>sp|B9HMF8|CSPLM_POPTR CASP-like protein POPTRDRAFT_820327 OS=Populus trichocarpa GN=POPTRDRAFT_820327 PE=3 SV=1

 Score =  278 bits (711), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 137/193 (70%), Positives = 159/193 (82%), Gaps = 7/193 (3%)

Query: 1   MRSPQSLHNGDTPSPLPRIPHFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTNS 60
           MR PQ   NG          HF ST+S+QKL+RFNSLILVFR +AFCFSLAS++FMLTNS
Sbjct: 1   MRFPQPHRNGGETQQ-----HFHSTISLQKLKRFNSLILVFRFSAFCFSLASAVFMLTNS 55

Query: 61  RGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQ 120
           RGS+S  WY++DAFR+VFAANAIVA+YSLFEM  +VWEISR AT FPEV QVWFDFGHDQ
Sbjct: 56  RGSDSFHWYNFDAFRYVFAANAIVAVYSLFEMTAAVWEISRNATLFPEVCQVWFDFGHDQ 115

Query: 121 VFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFR 180
           VFAYLLLSA+S G+E+ART+K  D CT    FC+QSDI++ALGF GFLF+GVSSL SGFR
Sbjct: 116 VFAYLLLSANSTGSEMARTMK--DACTDNKPFCVQSDIAIALGFVGFLFLGVSSLFSGFR 173

Query: 181 VACFIINGSRFHL 193
           V CFIINGSRF++
Sbjct: 174 VVCFIINGSRFYV 186

Populus trichocarpa (taxid: 3694)

>sp|Q9M2U0|CSPLJ_ARATH CASP-like protein At3g55390 OS=Arabidopsis thaliana GN=At3g55390 PE=2 SV=1

 Score =  261 bits (667), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 134/193 (69%), Positives = 156/193 (80%), Gaps = 1/193 (0%)

Query: 1   MRSPQSLHNGDTPSPLPRIPHFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTNS 60
           MRSP +  NG++P+ L    HF ST++ QKLRRFNSLIL+ RLA+F FSLAS++FMLTNS
Sbjct: 1   MRSPHAFRNGESPT-LRDHTHFHSTVTAQKLRRFNSLILLLRLASFSFSLASAVFMLTNS 59

Query: 61  RGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQ 120
           RGS SP WYD+DAFRFVF ANAIVA+YS+FEMG  VWE SR  T +PE  QVWFDFGHDQ
Sbjct: 60  RGSASPHWYDFDAFRFVFVANAIVALYSVFEMGTCVWEFSRETTLWPEAFQVWFDFGHDQ 119

Query: 121 VFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFR 180
           VF+YLLLSA SA   LART++G DTCTA  AFCLQSD+++ LGFA FLF+  SS  SGFR
Sbjct: 120 VFSYLLLSAGSAAAALARTMRGGDTCTANKAFCLQSDVAIGLGFAAFLFLAFSSCFSGFR 179

Query: 181 VACFIINGSRFHL 193
           VACF+I GSRFHL
Sbjct: 180 VACFLITGSRFHL 192

Arabidopsis thaliana (taxid: 3702)

>sp|B9SR15|CSPL4_RICCO CASP-like protein RCOM_0464280 OS=Ricinus communis GN=RCOM_0464280 PE=2 SV=1

 Score =  258 bits (658), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 150/198 (75%), Positives = 169/198 (85%), Gaps = 11/198 (5%)

Query: 1   MRSPQSLHNGDTPSPLPRIP-----HFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIF 55
           MRSPQSL NG+TPSP PR P     HF ST+S+QKL+RFN LILVFRL+ FCFSLASS+F
Sbjct: 1   MRSPQSLRNGETPSPSPRPPRFPTPHFHSTVSLQKLKRFNLLILVFRLSTFCFSLASSVF 60

Query: 56  MLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFD 115
           MLTN      P WY +DAFR+VFAANAIVAIYSLFEM  SVWEISRG T FPE+LQVWFD
Sbjct: 61  MLTN------PTWYHFDAFRYVFAANAIVAIYSLFEMAASVWEISRGNTLFPEILQVWFD 114

Query: 116 FGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSL 175
           FGHDQVFAYLLLSADSA T LA+TLKG DTC A+NAFC+QS I++ALGFAGFLF+G+SSL
Sbjct: 115 FGHDQVFAYLLLSADSAATALAKTLKGGDTCAASNAFCVQSYIAIALGFAGFLFLGLSSL 174

Query: 176 LSGFRVACFIINGSRFHL 193
           LSGFRV CF+INGSRF++
Sbjct: 175 LSGFRVVCFLINGSRFYV 192

Ricinus communis (taxid: 3988)

>sp|A9STU1|CSPL9_PHYPA CASP-like protein PHYPADRAFT_135270 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_135270 PE=2 SV=1

 Score =  152 bits (385), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 112/183 (61%), Gaps = 15/183 (8%)

Query: 15  PLPRIP--HFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTNSRGSNS-PR---- 67
           PL   P  H     +  K RR N+++ VFRL  F FSLA+ + M TN +   S P+    
Sbjct: 12  PLNSTPDVHLYGKTAAMKQRRSNTMLFVFRLLTFSFSLAAVLVMGTNKQKIRSAPQYLEV 71

Query: 68  -WYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLL 126
            W+D+D FR+VFA NAI+ +YS  E  ++V+ +SRG    PE  QVWFD+GHDQ FA LL
Sbjct: 72  AWHDFDPFRYVFAVNAIICVYSFVETWLAVYTLSRGTLLLPETFQVWFDYGHDQGFACLL 131

Query: 127 LSADSAGTELARTLKGTDT-------CTAANAFCLQSDISVALGFAGFLFIGVSSLLSGF 179
            SA+S G  +A+ L+   T       C+ A A+C Q+ +S+A+GF  FLF+ +SS L+G 
Sbjct: 132 FSANSVGIAMAQLLQSGSTLIQGQYYCSDAGAYCTQARVSIAMGFGAFLFLALSSFLTGL 191

Query: 180 RVA 182
           RVA
Sbjct: 192 RVA 194

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|A9T836|CSPL8_PHYPA CASP-like protein PHYPADRAFT_192523 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_192523 PE=2 SV=1

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/186 (44%), Positives = 110/186 (59%), Gaps = 10/186 (5%)

Query: 7   LHNGDTPSPLPRIPHFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTNSRGSNSP 66
           +  GD+     +  H+    + QK RR N +IL+FR   F FSL S I M TN    ++ 
Sbjct: 1   METGDSAVKSSQDVHYYGKSTAQKHRRSNGIILIFRALTFSFSLTSVIVMGTNRHRIDAQ 60

Query: 67  R---WYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFA 123
               WYD+D FR+V A NAI+ IYS  E+ ++V+   +   F PE  QVWFD+GHDQ FA
Sbjct: 61  SRVAWYDFDPFRYVLAVNAIICIYSFVEIWLAVYTYLKDTLFLPETFQVWFDYGHDQGFA 120

Query: 124 YLLLSADSAGTELARTLK-------GTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLL 176
           YLL SA+SAG  +A+ L+       G   C+ A  FC Q+  S+ LGF  FLF+ +SSLL
Sbjct: 121 YLLFSANSAGIAMAQLLQSGNSLIHGAYRCSDAGVFCTQARASIGLGFGAFLFLALSSLL 180

Query: 177 SGFRVA 182
           +G RVA
Sbjct: 181 TGLRVA 186

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|A9S848|CSPL7_PHYPA CASP-like protein PHYPADRAFT_182225 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_182225 PE=2 SV=1

 Score =  135 bits (339), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 113/186 (60%), Gaps = 10/186 (5%)

Query: 7   LHNGDTPSPLPRIPHFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTNSRGSN-- 64
           +   D+ +   +  HF      +  RR ++++L+FR   F FSLA+ + M TN    N  
Sbjct: 1   MEAADSATNNSKDTHFYGKSRAENRRRSDAMLLLFRALTFSFSLAAVVVMGTNRYRINPQ 60

Query: 65  -SPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFA 123
               WYD++ +R+V A NAI+ IYS  E  ++V+   +G+   PE+ QVWFD+GHDQ FA
Sbjct: 61  LKVSWYDFEPYRYVLAVNAIICIYSFVETWLAVYTYLQGSYLLPEIFQVWFDYGHDQGFA 120

Query: 124 YLLLSADSAGTELARTLKGTDT-------CTAANAFCLQSDISVALGFAGFLFIGVSSLL 176
           YLL SA+SAG  +A+ L+  +T       CT A  +C Q+ +S+ALGF  FLF+ +SSLL
Sbjct: 121 YLLFSANSAGVAMAQLLQSGNTLIHGAYHCTEAGGYCTQARVSIALGFVAFLFLALSSLL 180

Query: 177 SGFRVA 182
           +G RVA
Sbjct: 181 TGLRVA 186

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|P0DI23|CSPL2_PTEAA CASP-like protein PtaqContig2277 OS=Pteridium aquilinum subsp. aquilinum GN=PtaqContig2277 PE=3 SV=1

 Score =  124 bits (311), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 95/157 (60%), Gaps = 14/157 (8%)

Query: 46  FCFSLASSIFMLTNSRG-------SNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWE 98
           F FSLAS + M TNS           +  W D+D +R+V AA AIV +YS  E+G+ +W 
Sbjct: 64  FAFSLASLVIMATNSATTTATAGRHRTVNWVDFDTYRYVLAACAIVCLYSFAEIGLGLWY 123

Query: 99  ISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLK-------GTDTCTAANA 151
           + +G    PE +  WFDFGHDQ FAYL+ SA S  T +A  L+       G   C  AN+
Sbjct: 124 LLKGRMVMPESMAHWFDFGHDQGFAYLIFSACSGATAVAHNLRERHILIHGMYGCDEANS 183

Query: 152 FCLQSDISVALGFAGFLFIGVSSLLSGFRVACFIING 188
           FC++++IS+ L F  FLFI +SSLLSG+R+  ++I G
Sbjct: 184 FCMKAEISIGLAFGAFLFIALSSLLSGYRLVKWLILG 220

Pteridium aquilinum subsp. aquilinum (taxid: 104588)

>sp|Q2QNE3|CSPLP_ORYSJ CASP-like protein LOC_Os12g38100 OS=Oryza sativa subsp. japonica GN=LOC_Os12g38100 PE=3 SV=1

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 97/157 (61%), Gaps = 10/157 (6%)

Query: 32  RRFNSLILVFRLAAFCFSLASSIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFE 91
           RR   ++L+ RLA+ CF++A++ F  T+     +        FRF+ AANAIVA+YS FE
Sbjct: 24  RRLAGVMLLLRLASLCFAVAAAAFAATDGAALRAA------PFRFLLAANAIVAVYSAFE 77

Query: 92  MGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANA 151
           +  + WE++ GAT  PE +Q+WFDFGHDQ F Y+ L+A +A    A T       TA   
Sbjct: 78  VAAAAWEVAGGATLLPEAMQLWFDFGHDQGFGYMALAAAAAAAREAATCGSHGGGTA--- 134

Query: 152 FCLQSDISVALGFAGFLFIGVSSLLSGFRVACFIING 188
            C+Q DI+V LGFAGF  +  ++  SG+R+ACF+  G
Sbjct: 135 -CVQGDIAVGLGFAGFAAVAAAAAASGYRLACFLATG 170

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A9RZ57|CSPLD_PHYPA CASP-like protein PHYPADRAFT_161913 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_161913 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 96/194 (49%), Gaps = 28/194 (14%)

Query: 11  DTPSPLPRIPHFQSTLSVQKLRRFNSLI----LVFRLAAFCFSLASSIFMLTNSRGS--- 63
           D  +P P+  H        +LR+  + I      FR +    SL + I ++ ++RGS   
Sbjct: 186 DEDAPTPKKKH--------RLRKHLTAIGAYSFAFRFSETVLSLIA-IVVMCSTRGSMRT 236

Query: 64  -----NSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEV-LQVWFDFG 117
                 + ++  + A+R++ A N IV +YS F+    ++ +  G +F P + +  W  FG
Sbjct: 237 DGVDFGTLKFNHFQAYRYLVAVNVIVFVYSTFQFIQLLYTVILGISFIPSIFISTWMTFG 296

Query: 118 HDQVFAYLLLSADSAGTELART----LKGTDTCTA--ANAFCLQSDISVALGFAGFLFIG 171
            DQ+F YLLLSA ++   +A        G   C+     +FC ++D++V + F   L + 
Sbjct: 297 FDQLFLYLLLSASTSAATVANMSYTGEMGIQLCSRFDVGSFCSKADVAVTMSFFAVLAML 356

Query: 172 VSSLLSGFRVACFI 185
            S++L+ +R+A  +
Sbjct: 357 SSTILAIYRIAVLL 370

Physcomitrella patens subsp. patens (taxid: 145481)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
225449557	195	PREDICTED: CASP-like protein POPTRDRAFT_	1.0	0.989	0.8	4e-87
224109540	186	predicted protein [Populus trichocarpa]	0.958	0.994	0.757	4e-77
356575381	194	PREDICTED: CASP-like protein POPTRDRAFT_	1.0	0.994	0.716	4e-76
449459912	204	PREDICTED: CASP-like protein POPTRDRAFT_	0.994	0.941	0.768	2e-73
224100955	186	predicted protein [Populus trichocarpa]	0.963	1.0	0.709	8e-73
356536475	194	PREDICTED: CASP-like protein POPTRDRAFT_	1.0	0.994	0.711	9e-69
15233256	194	uncharacterized protein [Arabidopsis tha	0.994	0.989	0.694	9e-68
297816832	194	integral membrane family protein [Arabid	0.994	0.989	0.694	2e-67
255575058	192	conserved hypothetical protein [Ricinus	0.968	0.973	0.757	1e-66
168034658	199	predicted protein [Physcomitrella patens	0.870	0.844	0.442	5e-35

>gi|225449557|ref|XP_002283841.1| PREDICTED: CASP-like protein POPTRDRAFT_822486 [Vitis vinifera] gi|296086253|emb|CBI31694.3| unnamed protein product [Vitis vinifera]

 Score =  325 bits (834), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 156/195 (80%), Positives = 175/195 (89%), Gaps = 2/195 (1%)

Query: 1   MRSPQSLHNGDTPSPLPRIP--HFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLT 58
           MRSPQSL NG+TPSP PRIP  HF ST+S QKLRRFN++ILVFRLA+FCFSLA+ +FMLT
Sbjct: 1   MRSPQSLRNGETPSPHPRIPPHHFHSTVSAQKLRRFNTVILVFRLASFCFSLAAFVFMLT 60

Query: 59  NSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGH 118
           NSRGSNSP WYD+DAFRFV  ANAIVA+YSLFEMG SVWEIS+GAT FPE+LQVWFDF H
Sbjct: 61  NSRGSNSPHWYDFDAFRFVVVANAIVALYSLFEMGASVWEISKGATVFPEILQVWFDFSH 120

Query: 119 DQVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSG 178
           DQVFAYLLLSAD+AGT LARTLK T+TCT  NAFC+QSDI++ALG+ GFLF+G SSLLSG
Sbjct: 121 DQVFAYLLLSADAAGTALARTLKRTETCTDDNAFCVQSDIAIALGYGGFLFLGFSSLLSG 180

Query: 179 FRVACFIINGSRFHL 193
           FRV CFIINGSRFH+
Sbjct: 181 FRVVCFIINGSRFHI 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109540|ref|XP_002315230.1| predicted protein [Populus trichocarpa] gi|238055371|sp|B9HTK2.1|CSPLI_POPTR RecName: Full=CASP-like protein POPTRDRAFT_822486 gi|222864270|gb|EEF01401.1| predicted protein [Populus trichocarpa]

 Score =  292 bits (748), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 147/194 (75%), Positives = 166/194 (85%), Gaps = 9/194 (4%)

Query: 1   MRSPQSLHNG-DTPSPLPRIPHFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTN 59
           MRSPQ   +G DT        HFQST+SVQKL+RFNSLILVFR AAFCFSLAS++FMLTN
Sbjct: 1   MRSPQPHRSGGDTQ------QHFQSTVSVQKLKRFNSLILVFRFAAFCFSLASAVFMLTN 54

Query: 60  SRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHD 119
           SRGS+S  WY++DAFR+VFAANAIVAIYSLFEM  SVWEISR AT FPE+ QVWFDFGHD
Sbjct: 55  SRGSDSLHWYNFDAFRYVFAANAIVAIYSLFEMAASVWEISRNATLFPEICQVWFDFGHD 114

Query: 120 QVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGF 179
           QVFAYLLLSA++AGTELARTLK  DTCT   AFC+QSDI++ LGFAGFLF+G+SSL SGF
Sbjct: 115 QVFAYLLLSANTAGTELARTLK--DTCTDNKAFCVQSDIAIVLGFAGFLFLGISSLFSGF 172

Query: 180 RVACFIINGSRFHL 193
           RV CFIINGSRF++
Sbjct: 173 RVVCFIINGSRFYV 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575381|ref|XP_003555820.1| PREDICTED: CASP-like protein POPTRDRAFT_822486-like [Glycine max]

 Score =  289 bits (739), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 139/194 (71%), Positives = 161/194 (82%), Gaps = 1/194 (0%)

Query: 1   MRSPQSLHNGDTPSPLP-RIPHFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTN 59
           MRSPQ L +G   S  P   P F ST++  KLRRFN LILVFRL +F FSLASS+FMLTN
Sbjct: 1   MRSPQPLRSGGDNSCSPSHNPRFHSTVAEHKLRRFNLLILVFRLTSFSFSLASSVFMLTN 60

Query: 60  SRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHD 119
           +RGS+SP WY YD FRFV AANAIV +YS+FEMG SVWEISRG T FPEVLQ+WFDFGHD
Sbjct: 61  TRGSDSPHWYHYDTFRFVLAANAIVVVYSMFEMGASVWEISRGVTLFPEVLQIWFDFGHD 120

Query: 120 QVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGF 179
           QVFAYLLLSA +AGT +ARTLK  +TC A+NAFC+Q+DI++ALG+A FLF+G +SLL+GF
Sbjct: 121 QVFAYLLLSASAAGTSMARTLKEMETCRASNAFCVQTDIAIALGYAAFLFLGFTSLLTGF 180

Query: 180 RVACFIINGSRFHL 193
           RV CFIINGSRFHL
Sbjct: 181 RVVCFIINGSRFHL 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459912|ref|XP_004147690.1| PREDICTED: CASP-like protein POPTRDRAFT_822486-like [Cucumis sativus]

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 156/203 (76%), Positives = 173/203 (85%), Gaps = 11/203 (5%)

Query: 1   MRSPQSLHNGD-----TPSPLPRIP----HFQSTLSVQKLRRFNSLILVFRLAAFCFSLA 51
           MRSPQSL NG      TPSP  RIP    HF ST+SVQKL+RFNSLILVFRL+ FCFSLA
Sbjct: 1   MRSPQSLRNGGVGGGGTPSPHARIPTPHHHFHSTVSVQKLKRFNSLILVFRLSTFCFSLA 60

Query: 52  SSIFMLTNSRGS--NSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEV 109
           S++FM+TNSRGS  +SPRWYD+DAFR+VFAANAIVA+YSLFEM  SVWEISR  T FPE+
Sbjct: 61  SAVFMITNSRGSGSDSPRWYDFDAFRYVFAANAIVAVYSLFEMIASVWEISREVTLFPEI 120

Query: 110 LQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLF 169
           LQVWFDFGHDQ FAYLLLSADSAGT LA TLKGTDTC   +AFC+QS IS+ALGFAGFLF
Sbjct: 121 LQVWFDFGHDQAFAYLLLSADSAGTALAITLKGTDTCKVTSAFCVQSTISIALGFAGFLF 180

Query: 170 IGVSSLLSGFRVACFIINGSRFH 192
           +G+SSLLSGFRV CF+INGSRFH
Sbjct: 181 LGLSSLLSGFRVVCFVINGSRFH 203

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100955|ref|XP_002312083.1| predicted protein [Populus trichocarpa] gi|288559195|sp|B9HMF8.1|CSPLM_POPTR RecName: Full=CASP-like protein POPTRDRAFT_820327 gi|222851903|gb|EEE89450.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (711), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 137/193 (70%), Positives = 159/193 (82%), Gaps = 7/193 (3%)

Query: 1   MRSPQSLHNGDTPSPLPRIPHFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTNS 60
           MR PQ   NG          HF ST+S+QKL+RFNSLILVFR +AFCFSLAS++FMLTNS
Sbjct: 1   MRFPQPHRNGGETQQ-----HFHSTISLQKLKRFNSLILVFRFSAFCFSLASAVFMLTNS 55

Query: 61  RGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQ 120
           RGS+S  WY++DAFR+VFAANAIVA+YSLFEM  +VWEISR AT FPEV QVWFDFGHDQ
Sbjct: 56  RGSDSFHWYNFDAFRYVFAANAIVAVYSLFEMTAAVWEISRNATLFPEVCQVWFDFGHDQ 115

Query: 121 VFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFR 180
           VFAYLLLSA+S G+E+ART+K  D CT    FC+QSDI++ALGF GFLF+GVSSL SGFR
Sbjct: 116 VFAYLLLSANSTGSEMARTMK--DACTDNKPFCVQSDIAIALGFVGFLFLGVSSLFSGFR 173

Query: 181 VACFIINGSRFHL 193
           V CFIINGSRF++
Sbjct: 174 VVCFIINGSRFYV 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536475|ref|XP_003536763.1| PREDICTED: CASP-like protein POPTRDRAFT_822486-like [Glycine max]

 Score =  265 bits (676), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 138/194 (71%), Positives = 159/194 (81%), Gaps = 1/194 (0%)

Query: 1   MRSPQSLHNGDTPSPLP-RIPHFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTN 59
           MRSPQ L NG   S  P   P F ST++  KLRRFN LILVFRL++F FSLASS+FMLTN
Sbjct: 1   MRSPQPLRNGGDNSCSPSHNPRFHSTVAEHKLRRFNLLILVFRLSSFSFSLASSVFMLTN 60

Query: 60  SRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHD 119
           +RGS SP W  YD FRF  AANAIVA+YS+FEMG SVWEISRG T FPEVLQ+WFDFGHD
Sbjct: 61  TRGSYSPHWNHYDTFRFFLAANAIVAVYSVFEMGASVWEISRGVTLFPEVLQIWFDFGHD 120

Query: 120 QVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGF 179
           QVFAYLLLSA +AGT +ARTLK  +TC A+NAFC+Q+DI++ALG+A FLF+G +SLL+GF
Sbjct: 121 QVFAYLLLSASAAGTSMARTLKEMETCRASNAFCVQTDIAIALGYAAFLFLGFTSLLTGF 180

Query: 180 RVACFIINGSRFHL 193
           RV  FIINGSRFHL
Sbjct: 181 RVVSFIINGSRFHL 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233256|ref|NP_191099.1| uncharacterized protein [Arabidopsis thaliana] gi|75183229|sp|Q9M2U0.1|CSPLJ_ARATH RecName: Full=CASP-like protein At3g55390 gi|7076782|emb|CAB75897.1| putative protein [Arabidopsis thaliana] gi|21594014|gb|AAM65932.1| unknown [Arabidopsis thaliana] gi|90567998|gb|ABD94069.1| At3g55390 [Arabidopsis thaliana] gi|332645857|gb|AEE79378.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  261 bits (667), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 134/193 (69%), Positives = 156/193 (80%), Gaps = 1/193 (0%)

Query: 1   MRSPQSLHNGDTPSPLPRIPHFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTNS 60
           MRSP +  NG++P+ L    HF ST++ QKLRRFNSLIL+ RLA+F FSLAS++FMLTNS
Sbjct: 1   MRSPHAFRNGESPT-LRDHTHFHSTVTAQKLRRFNSLILLLRLASFSFSLASAVFMLTNS 59

Query: 61  RGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQ 120
           RGS SP WYD+DAFRFVF ANAIVA+YS+FEMG  VWE SR  T +PE  QVWFDFGHDQ
Sbjct: 60  RGSASPHWYDFDAFRFVFVANAIVALYSVFEMGTCVWEFSRETTLWPEAFQVWFDFGHDQ 119

Query: 121 VFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFR 180
           VF+YLLLSA SA   LART++G DTCTA  AFCLQSD+++ LGFA FLF+  SS  SGFR
Sbjct: 120 VFSYLLLSAGSAAAALARTMRGGDTCTANKAFCLQSDVAIGLGFAAFLFLAFSSCFSGFR 179

Query: 181 VACFIINGSRFHL 193
           VACF+I GSRFHL
Sbjct: 180 VACFLITGSRFHL 192

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816832|ref|XP_002876299.1| integral membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297322137|gb|EFH52558.1| integral membrane family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 134/193 (69%), Positives = 154/193 (79%), Gaps = 1/193 (0%)

Query: 1   MRSPQSLHNGDTPSPLPRIPHFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTNS 60
           MRSP +  NG++PS      HF ST+  QKLRRFNSLIL+ RLA+F FSLAS++FMLTNS
Sbjct: 1   MRSPHAFRNGESPSSRDHT-HFHSTVVAQKLRRFNSLILLLRLASFSFSLASAVFMLTNS 59

Query: 61  RGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQ 120
           RGS SP WYD+DAFRFVF ANAIVA+YS+FEMG  VWE SR  T +PE  QVWFDFGHDQ
Sbjct: 60  RGSGSPHWYDFDAFRFVFVANAIVALYSVFEMGTCVWEFSRETTLWPEAFQVWFDFGHDQ 119

Query: 121 VFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFR 180
           VF+YLLLSA SA   LART++G DTCTA  AFCLQSD+++ LGFA FLF+  SS  SGFR
Sbjct: 120 VFSYLLLSAGSAAAALARTMRGGDTCTANKAFCLQSDVAIGLGFAAFLFLAFSSCFSGFR 179

Query: 181 VACFIINGSRFHL 193
           VACF+I GSRFHL
Sbjct: 180 VACFLITGSRFHL 192

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575058|ref|XP_002528434.1| conserved hypothetical protein [Ricinus communis] gi|238055374|sp|B9SR15.1|CSPL4_RICCO RecName: Full=CASP-like protein RCOM_0464280 gi|223532110|gb|EEF33917.1| conserved hypothetical protein [Ricinus communis]

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 150/198 (75%), Positives = 169/198 (85%), Gaps = 11/198 (5%)

Query: 1   MRSPQSLHNGDTPSPLPRIP-----HFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIF 55
           MRSPQSL NG+TPSP PR P     HF ST+S+QKL+RFN LILVFRL+ FCFSLASS+F
Sbjct: 1   MRSPQSLRNGETPSPSPRPPRFPTPHFHSTVSLQKLKRFNLLILVFRLSTFCFSLASSVF 60

Query: 56  MLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFD 115
           MLTN      P WY +DAFR+VFAANAIVAIYSLFEM  SVWEISRG T FPE+LQVWFD
Sbjct: 61  MLTN------PTWYHFDAFRYVFAANAIVAIYSLFEMAASVWEISRGNTLFPEILQVWFD 114

Query: 116 FGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSL 175
           FGHDQVFAYLLLSADSA T LA+TLKG DTC A+NAFC+QS I++ALGFAGFLF+G+SSL
Sbjct: 115 FGHDQVFAYLLLSADSAATALAKTLKGGDTCAASNAFCVQSYIAIALGFAGFLFLGLSSL 174

Query: 176 LSGFRVACFIINGSRFHL 193
           LSGFRV CF+INGSRF++
Sbjct: 175 LSGFRVVCFLINGSRFYV 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168034658|ref|XP_001769829.1| predicted protein [Physcomitrella patens subsp. patens] gi|288559176|sp|A9STU1.1|CSPL9_PHYPA RecName: Full=CASP-like protein PHYPADRAFT_135270 gi|162678938|gb|EDQ65391.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 112/183 (61%), Gaps = 15/183 (8%)

Query: 15  PLPRIP--HFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTNSRGSNS-PR---- 67
           PL   P  H     +  K RR N+++ VFRL  F FSLA+ + M TN +   S P+    
Sbjct: 12  PLNSTPDVHLYGKTAAMKQRRSNTMLFVFRLLTFSFSLAAVLVMGTNKQKIRSAPQYLEV 71

Query: 68  -WYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLL 126
            W+D+D FR+VFA NAI+ +YS  E  ++V+ +SRG    PE  QVWFD+GHDQ FA LL
Sbjct: 72  AWHDFDPFRYVFAVNAIICVYSFVETWLAVYTLSRGTLLLPETFQVWFDYGHDQGFACLL 131

Query: 127 LSADSAGTELARTLKGTDT-------CTAANAFCLQSDISVALGFAGFLFIGVSSLLSGF 179
            SA+S G  +A+ L+   T       C+ A A+C Q+ +S+A+GF  FLF+ +SS L+G 
Sbjct: 132 FSANSVGIAMAQLLQSGSTLIQGQYYCSDAGAYCTQARVSIAMGFGAFLFLALSSFLTGL 191

Query: 180 RVA 182
           RVA
Sbjct: 192 RVA 194

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
TAIR|locus:2019828	187	AT1G79780 "AT1G79780" [Arabido	0.585	0.604	0.325	5e-12
TAIR|locus:2170603	270	AT5G40300 "AT5G40300" [Arabido	0.813	0.581	0.321	3.8e-11
TAIR|locus:2057202	188	AT2G38480 "AT2G38480" [Arabido	0.647	0.664	0.301	2.9e-09
TAIR|locus:2049500	283	AT2G36330 "AT2G36330" [Arabido	0.725	0.494	0.284	1.6e-08
TAIR|locus:2020297	204	AT1G17200 "AT1G17200" [Arabido	0.699	0.661	0.307	3.4e-08
TAIR|locus:505006479	182	AT4G16442 "AT4G16442" [Arabido	0.772	0.818	0.289	5e-07
TAIR|locus:1006230404	208	AT4G11655 "AT4G11655" [Arabido	0.730	0.677	0.26	7.7e-06
UNIPROTKB|A1XGB4	166	PIMP1 "CASP-like protein PIMP1	0.834	0.969	0.229	1.7e-05
TAIR|locus:2170703	297	AT5G62820 "AT5G62820" [Arabido	0.725	0.471	0.270	2.3e-05
TAIR|locus:2094957	212	AT3G16300 "AT3G16300" [Arabido	0.720	0.655	0.227	4e-05

TAIR|locus:2019828 AT1G79780 "AT1G79780" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 39/120 (32%), Positives = 63/120 (52%)

Query:    65 SPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAY 124
             S  W    ++++V  A A   +YSL ++ + V+ +  G+   P   Q W  F  DQ+F Y
Sbjct:    61 SSNWSFSPSYQYVVGACAGTVLYSLLQLCLGVYRLVTGSPITPSRFQAWLCFTSDQLFCY 120

Query:   125 LLLSADSAG---TELART-LKGT---DTCTAANAFCLQSDISVALGFAGFLFIGVSSLLS 177
             L++SA SAG   T L +T ++ T   D C   ++FC    +S+ L F  F+F+  SS  +
Sbjct:   121 LMMSAGSAGSGVTNLNKTGIRHTPLPDFCKTLSSFCNHVALSLLLVFLSFIFLASSSFFT 180

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2170603 AT5G40300 "AT5G40300" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 53/165 (32%), Positives = 79/165 (47%)

Query:    20 PHFQSTLSVQKLRRFNSLI----LVFRLAAFCFSLAS-SIFMLTNSRGSNSPRWYDYDAF 74
             P F S+ S  +  ++ SLI    L FR+ AF   L S S+ +    +G     +Y+Y  F
Sbjct:   101 PSFSSSSSTPRESKWASLIRKALLGFRVIAFVSCLVSFSVMVSDRDKGWAHDSFYNYKEF 160

Query:    75 RFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGT 134
             RF  AAN I  +YS F +   V+ +S         L+ + +FG DQ+ AYLL SA    T
Sbjct:   161 RFCLAANVIGFVYSGFMICDLVYLLSTSIRRSRHNLRHFLEFGLDQMLAYLLASAS---T 217

Query:   135 ELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGF 179
               +  +    +   A+ F   +  SVAL +  F+     SL SG+
Sbjct:   218 SASIRVDDWQSNWGADKFPDLARASVALSYVSFVAFAFCSLASGY 262

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2057202 AT2G38480 "AT2G38480" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 41/136 (30%), Positives = 72/136 (52%)

Query:    48 FSLASSIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFP 107
             FSL + + M++N  G     + DY+ +R+V A + I  +Y+ ++   +    S+    F 
Sbjct:    58 FSLIAFLIMVSNKHGYGR-NFNDYEEYRYVLAISIISTLYTAWQ---TFAHFSK-REIFD 112

Query:   108 EVLQVWFDFGHDQVFAYLLLSADSAGTELARTLK-GTDTCTAANAFCLQSDISVALGFAG 166
                 +  DF  DQ+ AYLL+SA S+   L    + G D     +A    S IS+A+ FA 
Sbjct:   113 RRTSILVDFSGDQIVAYLLISAASSAIPLTNIFREGQDNIFTDSA---ASAISMAI-FA- 167

Query:   167 FLFIGVSSLLSGFRVA 182
             F+ + +S+L SG++++
Sbjct:   168 FIALALSALFSGYKLS 183

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2049500 AT2G36330 "AT2G36330" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 41/144 (28%), Positives = 67/144 (46%)

Query:    39 LVFRLAAFCFSLAS-SIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVW 97
             L FRL+    +L S SI     ++G +   +  Y  +RF  + N +  +YS F+     +
Sbjct:   137 LGFRLSEVVLALISFSIMAADKTKGWSGDSFDRYKEYRFCLSVNVVAFVYSSFQACDLAY 196

Query:    98 EISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSD 157
              + +        L+  F+F  DQV AYLL+SA +A   + R           + F   + 
Sbjct:   197 HLVKEKHLISHHLRPLFEFIIDQVLAYLLMSASTAA--VTRVDDWVSNW-GKDEFTEMAS 253

Query:   158 ISVALGFAGFLFIGVSSLLSGFRV 181
              S+A+ F  FL    SSL+SG+ +
Sbjct:   254 ASIAMSFLAFLAFAFSSLISGYNL 277

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2020297 AT1G17200 "AT1G17200" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 47/153 (30%), Positives = 76/153 (49%)

Query:    40 VFRLAAFCFSLASSIFML----TNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVS 95
             + RLA     +A+ + ML    TN  GS S  + +  AFR++  AN I A YSL    ++
Sbjct:    36 MLRLAPVGLCVAALVVMLKDSETNEFGSIS--YSNLTAFRYLVHANGICAGYSLLSAAIA 93

Query:    96 VWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTE---LA----RTLKGTDTCTA 148
                + R ++  P   +VW  F  DQ+  YL+L+A +   E   LA      +  +D C++
Sbjct:    94 A--MPRSSSTMP---RVWTFFCLDQLLTYLVLAAGAVSAEVLYLAYNGDSAITWSDACSS 148

Query:   149 ANAFCLQSDISVALGFAGFLFIGVSSLLSGFRV 181
                FC ++  SV + F    F  V SL+S +++
Sbjct:   149 YGGFCHRATASVIITFFVVCFYIVLSLISSYKL 181

GO:0005515 "protein binding" evidence=IPI

GO:0080167 "response to karrikin" evidence=IEP

GO:0006949 "syncytium formation" evidence=RCA

TAIR|locus:505006479 AT4G16442 "AT4G16442" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 5.0e-07, P = 5.0e-07
 Identities = 48/166 (28%), Positives = 73/166 (43%)

Query:    32 RRFNSLILVFRLAAFCFSLASSIFMLTNSRGS------NSPRWYDYDAFRFVFAANAIVA 85
             RR     L+ R +   F+L + I ++T++          + ++ D  A  F+  AN I A
Sbjct:     6 RRMRLTELLLRCSISVFALLALILVVTDTEVKLIFTIKKTAKYTDMKAVVFLVVANGIAA 65

Query:    86 IYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTE---LART--- 139
             +YSL +    V    +G   F + L  W  F  DQ  AYL ++A +A  E   +AR    
Sbjct:    66 VYSLLQSVRCVVGTMKGKVLFSKPL-AWAFFSGDQAMAYLNVAAIAATAESGVIAREGEE 124

Query:   140 -LKGTDTCTAANAFCLQSDISVA---LGFAGFLFIGVSSLLSGFRV 181
              L+    CT    FC Q  I V+   L     +F+   S  S FR+
Sbjct:   125 DLQWMRVCTMYGKFCNQMAIGVSSALLASIAMVFVSCISAFSLFRL 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1006230404 AT4G11655 "AT4G11655" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 7.7e-06, P = 7.7e-06
 Identities = 39/150 (26%), Positives = 67/150 (44%)

Query:    37 LILVFRLAAFCF--SLASSIFMLTNSRG---SNSPRWYDYDAFRFVFAANAIVAIYSLFE 91
             L+L F     CF  +L+ ++ +   S+     NS  +  Y    + F    I  +Y+  +
Sbjct:    57 LVLRFITMVLCFVSALSLAVNVQRPSKRHLTQNSSSFASYPELLYCFGVAVIGFVYTSLQ 116

Query:    92 MGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANA 151
                 V +I+       E L  +  F  DQV  YLL+S+ S      + +      T  N 
Sbjct:   117 TFKGVCDITHRGVLISEPLSDYISFIFDQVICYLLVSSSSVAIAWIQHINEDAIKTLRN- 175

Query:   152 FCLQSDISVALGFAGFLFIGVSSLLSGFRV 181
                 S +SV++ F+ FL + +S LLSG+++
Sbjct:   176 ---NSIVSVSMSFSAFLVLTLSGLLSGYKL 202

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|A1XGB4 PIMP1 "CASP-like protein PIMP1" [Capsicum annuum (taxid:4072)]

 Score = 112 (44.5 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 39/170 (22%), Positives = 77/170 (45%)

Query:    12 TPSPLPRIPHFQSTLSVQKLRRFNSLILVFRLAAFCFSLASSIFMLTNSRGSNSPRWYDY 71
             TP P   +P + S +          L L+  L +F   +A++   ++   G    ++ D+
Sbjct:     2 TPPPTSTVPPYVSLI-------VRILTLICLLISFIV-IATNNQTVSTVAGDVKIKFKDF 53

Query:    72 DAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADS 131
              A+R++ A   I   Y+L ++  S+  ++ G     E   + FDF  D+  +Y L++  +
Sbjct:    54 YAYRYLIATVIIGMAYTLLQIAFSISLLTTGNRIGGEGFLL-FDFYGDKFISYFLVTGAA 112

Query:   132 AGTELARTLKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRV 181
             A   + + LK  +     + F   S+ + +L   GF F   SS+ S + +
Sbjct:   113 ASFGMTQDLKQLEGSDNYSKFLNTSNAAASLCLIGFFFAVASSIFSSYNL 162

GO:0002229 "defense response to oomycetes" evidence=IMP

GO:0009409 "response to cold" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009617 "response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2170703 AT5G62820 "AT5G62820" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 39/144 (27%), Positives = 64/144 (44%)

Query:    39 LVFRLAAFCFSLAS-SIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVW 97
             L FR+      + S SI     ++G +   +  Y  +R+  A N I  +YS FE   +  
Sbjct:   151 LGFRITEVILCVISFSIMAADKTQGWSGDSYDRYKEYRYCLAVNVIAFVYSAFEACDAAC 210

Query:    98 EISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDTCTAANAFCLQSD 157
              I++ +          F F  DQ+ AYLL+SA S     A  +    +    + F   + 
Sbjct:   211 YIAKESYMINCGFHDLFVFSMDQLLAYLLMSASSCA---ATRVDDWVSNWGKDEFTQMAT 267

Query:   158 ISVALGFAGFLFIGVSSLLSGFRV 181
              S+A+ F  F    VS+L+S +R+
Sbjct:   268 ASIAVSFLAFGAFAVSALISSYRL 291

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2094957 AT3G16300 "AT3G16300" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 36/158 (22%), Positives = 70/158 (44%)

Query:    38 ILVFRLAAFCFSLAS-SIFMLTNSRGSNSPRWYDY-----------DAFRFVFAANAIVA 85
             + +F L A C ++++ ++ ++  +R ++    Y +           D+  ++   ++   
Sbjct:    46 VAMFVLRAMCMAVSTVAVTLMVTARETSMTTLYGFEFQLHAVWSLSDSLIYLVVVSSATV 105

Query:    86 IYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAG---TELART--- 139
             +YSL ++ +S   + R +   P   Q WF F  DQ+  Y ++S  SA    T + RT   
Sbjct:   106 LYSLIQLIISGTRLMRKSPVIPTRTQAWFCFVADQIIGYAMVSGGSAALGVTNMNRTGIR 165

Query:   140 -LKGTDTCTAANAFCLQSDISVALGFAGFLFIGVSSLL 176
              +   + C +   FC     S+      FL +  SSLL
Sbjct:   166 HMPLPNFCKSLGFFCDHLAGSIVFALFAFLLLAASSLL 203

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B9HTK2	CSPLI_POPTR	No assigned EC number	0.7577	0.9585	0.9946	yes	no
B9SR15	CSPL4_RICCO	No assigned EC number	0.7575	0.9689	0.9739	N/A	no
Q9M2U0	CSPLJ_ARATH	No assigned EC number	0.6943	0.9948	0.9896	yes	no
B9HMF8	CSPLM_POPTR	No assigned EC number	0.7098	0.9637	1.0	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	193
pfam04535	150	pfam04535, DUF588, Domain of unknown function (DUF	1e-26
TIGR01569	154	TIGR01569, A_tha_TIGR01569, plant integral membran	4e-08

>gnl|CDD|218134 pfam04535, DUF588, Domain of unknown function (DUF588)

 Score = 98.5 bits (246), Expect = 1e-26
 Identities = 52/151 (34%), Positives = 71/151 (47%), Gaps = 15/151 (9%)

Query: 32  RRFNSLILVFRLAAFCFSLASSIFMLTNS------RGSNSPRWYDYDAFRFVFAANAIVA 85
           R      LV RLAAF  +LA+++ M TN              + D  AFR++  ANAI A
Sbjct: 2   RPLRLAELVLRLAAFVLALAAAVVMGTNKQTKPFFFIQKKASFSDLPAFRYLVVANAIAA 61

Query: 86  IYSLFEMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDT 145
            YSL ++ +SV+ +SR           W  F  DQV AYLLL+A SA   +    +  ++
Sbjct: 62  GYSLLQLVLSVYLLSRKKPRTK--GLAWLLFILDQVMAYLLLAAASAAAAIVYLARNGNS 119

Query: 146 -------CTAANAFCLQSDISVALGFAGFLF 169
                  C     FC ++  SVAL F  FL 
Sbjct: 120 HANWMKICNQFGRFCNRAAASVALSFLAFLL 150

This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices. Length = 150

>gnl|CDD|233471 TIGR01569, A_tha_TIGR01569, plant integral membrane protein TIGR01569

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 19/158 (12%)

Query: 39  LVFRLAAFCFSLASSIFMLTNSRGSN--------SPRWYDYDAFRFVFAANAIVAIYSLF 90
           L+ R+ AF  +LA++I M TN               ++ D  AF +   ANAI   YSL 
Sbjct: 1   LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLL 60

Query: 91  EMGVSVWEISRGATFFPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTDT----- 145
            + VS++ + +   FF    ++   F  D V   LL S  SA   +A   K  +      
Sbjct: 61  SLVVSIFGLLKRRVFF----KLIALFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWL 116

Query: 146 --CTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRV 181
             C     FC +   S+AL     + + + S+LS   +
Sbjct: 117 KICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAISL 154

This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
TIGR01569	154	A_tha_TIGR01569 plant integral membrane protein TI	100.0
PF04535	149	DUF588: Domain of unknown function (DUF588); Inter	100.0
PF01284	144	MARVEL: Membrane-associating domain; InterPro: IPR	98.56

>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569

Probab=100.00  E-value=2.7e-37  Score=247.78  Aligned_cols=139  Identities=30%  Similarity=0.398  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCC--------CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchh
Q 029463           39 LVFRLAAFCFSLASSIFMLTNSRGSN--------SPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVL  110 (193)
Q Consensus        39 l~LR~~a~~~sl~a~~vM~t~~qt~~--------~~~f~~~~af~ylv~an~i~~~Ysllql~~~~~~l~~~~~~~~~~~  110 (193)
                      ++||+++++++++|+++|+||+|+.+        +++|+|+++|+|+|++|+|+++|+++|++++++.+.+|+..    .
T Consensus         1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~----~   76 (154)
T TIGR01569         1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVF----F   76 (154)
T ss_pred             CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch----h
Confidence            46999999999999999999999874        58999999999999999999999999999999887777643    3


Q ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCC-------CCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029463          111 QVWFDFGHDQVFAYLLLSADSAGTELARTLKGTD-------TCTAANAFCLQSDISVALGFAGFLFIGVSSLLSGFRV  181 (193)
Q Consensus       111 ~~~~~f~~Dqv~ayLL~SaasAA~~v~~l~~~g~-------~C~~~~~FC~~~~~Sv~lsflA~~~~~~ss~lSa~~L  181 (193)
                      ..|++|++||+++|+++||++||+++++++++||       .|+++++||+|+++|++++|+|++++++++++|++++
T Consensus        77 ~~~~~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~~~  154 (154)
T TIGR01569        77 KLIALFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAISL  154 (154)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4999999999999999999999999999999996       4999999999999999999999999999999999874

This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.

>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity

Probab=100.00  E-value=1.8e-34  Score=229.25  Aligned_cols=136  Identities=40%  Similarity=0.644  Sum_probs=126.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCC------CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 029463           32 RRFNSLILVFRLAAFCFSLASSIFMLTNSRGSN------SPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATF  105 (193)
Q Consensus        32 r~~~~~~l~LR~~a~~~sl~a~~vM~t~~qt~~------~~~f~~~~af~ylv~an~i~~~Ysllql~~~~~~l~~~~~~  105 (193)
                      |+.+.++++||+++++++++|+++|++|+|+.+      +++|+|+++|+|++++|+|+++|+++|++.+++.+.+|+  
T Consensus         1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~--   78 (149)
T PF04535_consen    1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK--   78 (149)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--
Confidence            345677899999999999999999999999753      899999999999999999999999999999999888877  


Q ss_pred             CcchhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCC-------CCcchhhhhhhHHHHHHHHHHHHHH
Q 029463          106 FPEVLQVWFDFGHDQVFAYLLLSADSAGTELARTLKGTD-------TCTAANAFCLQSDISVALGFAGFLF  169 (193)
Q Consensus       106 ~~~~~~~~~~f~~Dqv~ayLL~SaasAA~~v~~l~~~g~-------~C~~~~~FC~~~~~Sv~lsflA~~~  169 (193)
                      .+++...|++|++||+++|+++||++||+++++++++||       .|+.+++||+|+++|++++|+|+++
T Consensus        79 ~~~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~  149 (149)
T PF04535_consen   79 LRSKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA  149 (149)
T ss_pred             CcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence            556777999999999999999999999999999999885       5999999999999999999999974

It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.

>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain

Probab=98.56  E-value=3.1e-06  Score=64.93  Aligned_cols=134  Identities=18%  Similarity=0.176  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhHHHHHH
Q 029463           38 ILVFRLAAFCFSLASSIFMLTNSRGSNSPRWYDYDAFRFVFAANAIVAIYSLFEMGVSVWEISRGATFFPEVLQVWFDFG  117 (193)
Q Consensus        38 ~l~LR~~a~~~sl~a~~vM~t~~qt~~~~~f~~~~af~ylv~an~i~~~Ysllql~~~~~~l~~~~~~~~~~~~~~~~f~  117 (193)
                      ..++|+++++++++.+.+++....+.........++..|.+.+.++...|++.-++...+. . +.  .++....+.+++
T Consensus         6 ~~ilR~lq~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~-~~--~~~~~~~~~~~~   81 (144)
T PF01284_consen    6 SGILRILQLVFALIIFGLVASSIATGSQIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFS-L-KY--RPRIPWPLVEFI   81 (144)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-H-hc--ccccccchhHHH
Confidence            4789999999999999999998744333355667788999999999999998888877654 1 11  223455778999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCC---C-CCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 029463          118 HDQVFAYLLLSADSAGTELARTLKGT---D-TCTAANAFCLQSDISVALGFAGFLFIGVSSL  175 (193)
Q Consensus       118 ~Dqv~ayLL~SaasAA~~v~~l~~~g---~-~C~~~~~FC~~~~~Sv~lsflA~~~~~~ss~  175 (193)
                      .|.+++.+-+.+..+-+.-....+.+   + .+...++-|+...++.+++|+.++++..+.+
T Consensus        82 ~~~v~~il~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~  143 (144)
T PF01284_consen   82 FDAVFAILWLAAFIALAAYLSDHSCSNTGNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAV  143 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcccccCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998777665433221111   1 2334567899999999999999999988765

The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00