Citrus Sinensis ID: 029484
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 192 | 2.2.26 [Sep-21-2011] | |||||||
| P48261 | 190 | Anthranilate synthase com | N/A | no | 0.901 | 0.910 | 0.544 | 7e-52 | |
| P51362 | 189 | Anthranilate synthase com | N/A | no | 0.875 | 0.888 | 0.491 | 1e-45 | |
| Q1XDC5 | 189 | Anthranilate synthase com | N/A | no | 0.880 | 0.894 | 0.477 | 4e-44 | |
| Q08654 | 589 | Anthranilate synthase com | yes | no | 0.906 | 0.295 | 0.478 | 5e-44 | |
| P00901 | 198 | Anthranilate synthase com | yes | no | 0.890 | 0.863 | 0.472 | 1e-42 | |
| P20576 | 201 | Anthranilate synthase com | yes | no | 0.901 | 0.860 | 0.461 | 9e-41 | |
| P28819 | 194 | Para-aminobenzoate/anthra | yes | no | 0.932 | 0.922 | 0.451 | 4e-40 | |
| P00902 | 194 | Anthranilate synthase com | yes | no | 0.906 | 0.896 | 0.443 | 3e-39 | |
| P26922 | 196 | Anthranilate synthase com | yes | no | 0.942 | 0.923 | 0.457 | 7e-39 | |
| P00903 | 187 | Para-aminobenzoate syntha | N/A | no | 0.880 | 0.903 | 0.451 | 5e-38 |
| >sp|P48261|TRPG_CYAPA Anthranilate synthase component II OS=Cyanophora paradoxa GN=trpG PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 203 bits (516), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/178 (54%), Positives = 130/178 (73%), Gaps = 5/178 (2%)
Query: 5 KYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 64
+Y+ EL V RND++T++E+K N +G++ISP PG P+DSGIS + LG +P+
Sbjct: 17 QYLSELNIKVLVKRNDKITLDEIKNLNIQGIIISPCPGGPEDSGISQGIIKYLGNQIPIL 76
Query: 65 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVI 124
GVC+G Q IG FGGKI+++P ++HGK S++++D K G+ L NP TA RYHSL+I
Sbjct: 77 GVCLGHQTIGHVFGGKIIKAP-KLIHGKPSIIFHDGK---GVFQNLKNPITATRYHSLII 132
Query: 125 EKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182
EKES P D LE+TAWTEDGLIM +HKKYK LQG+QFHPESI+T GK I++NFI +
Sbjct: 133 EKESCP-DELEITAWTEDGLIMGIQHKKYKQLQGIQFHPESILTESGKQILQNFINCL 189
|
Cyanophora paradoxa (taxid: 2762) EC: 4EC: .EC: 1EC: .EC: 3EC: .EC: 2EC: 7 |
| >sp|P51362|TRPG_PORPU Anthranilate synthase component II OS=Porphyra purpurea GN=trpG PE=4 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 122/173 (70%), Gaps = 5/173 (2%)
Query: 7 MGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66
+GELG+ V RNDE+ V ++K+ NP ++ISPGPG P +SGISL + L +P+ GV
Sbjct: 19 VGELGHDVLVCRNDEIDVVKIKKLNPEKIIISPGPGKPTESGISLDVISSLAEYIPILGV 78
Query: 67 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEK 126
C+G Q IG GG I++ P +MHGK+S +Y+D + L L NPF A RYHSL+I++
Sbjct: 79 CLGHQSIGYINGGSIIKVP-KIMHGKTSQIYHD---REDLFINLPNPFIATRYHSLIIDR 134
Query: 127 ESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179
+FP++ L VTAWT++ +IMA RHK YK L+G+QFHPES+ T G+ +++NF+
Sbjct: 135 ANFPTN-LAVTAWTDNNIIMACRHKHYKMLRGIQFHPESLWTVCGQQLLKNFL 186
|
Porphyra purpurea (taxid: 2787) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|Q1XDC5|TRPG_PORYE Anthranilate synthase component II OS=Porphyra yezoensis GN=trpG PE=4 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (449), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 83/174 (47%), Positives = 120/174 (68%), Gaps = 5/174 (2%)
Query: 7 MGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66
+GELGY V RNDE+ + +K+ NP ++ISPGPG P DSGISL + ++P+ GV
Sbjct: 19 VGELGYDVLVCRNDEIDIPTIKQLNPNKIIISPGPGKPSDSGISLDVISSFSDSIPILGV 78
Query: 67 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEK 126
C+G Q IG GG+I++ +MHGK+S +Y++ + L L NPF A RYHSL+I+
Sbjct: 79 CLGHQSIGYLNGGRIIKVS-EIMHGKTSKIYHN---NEDLFKTLPNPFIATRYHSLIIDN 134
Query: 127 ESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180
+FPS +L +TAWTE+ +IMA RHK + L+G+QFHPES+ T G+ ++RNF++
Sbjct: 135 LNFPS-SLAITAWTENNIIMACRHKDNQMLRGIQFHPESLWTFYGQQLLRNFLE 187
|
Porphyra yezoensis (taxid: 2788) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|Q08654|TRPG_THEMA Anthranilate synthase component II OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=trpGD PE=3 SV=2 | Back alignment and function description |
|---|
Score = 177 bits (448), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 87/182 (47%), Positives = 129/182 (70%), Gaps = 8/182 (4%)
Query: 2 TFLKYMGEL--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGP 59
++Y+GE+ EV+RNDE+T+EE++RKNP ++ISPGPG P+++GIS+ V
Sbjct: 59 NIVQYIGEVEPDCEIEVFRNDEITIEEIERKNPTHIVISPGPGRPEEAGISVDVVRHFSG 118
Query: 60 TVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRY 119
VP+ GVC+G Q IG AFGGKIV + ++HGK+S + ++ K G+ +G+ NP A RY
Sbjct: 119 KVPILGVCLGHQVIGYAFGGKIVHAKR-ILHGKTSKIVHNGK---GVFSGVKNPLVATRY 174
Query: 120 HSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179
HSLV+E+ S P + LE+TA ++DG IM +HK++ GVQFHPES++T EGK I++NF+
Sbjct: 175 HSLVVEEASLP-EVLEITAKSDDGEIMGLQHKEHPTF-GVQFHPESVLTEEGKRIIKNFL 232
Query: 180 KM 181
+
Sbjct: 233 NI 234
|
Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274) EC: 2 EC: . EC: 4 EC: . EC: 2 EC: . EC: 1 EC: 8 |
| >sp|P00901|TRPG_PSEPU Anthranilate synthase component II OS=Pseudomonas putida GN=trpG PE=1 SV=2 | Back alignment and function description |
|---|
Score = 172 bits (436), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 126/182 (69%), Gaps = 11/182 (6%)
Query: 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 63
++Y+GELG +V RNDE+T+ +++ NP +++SPGP P ++G+S++ +L +P+
Sbjct: 17 VQYLGELGAEVKVIRNDEMTIAQIEALNPERIVVSPGPCTPSEAGVSIEAILHFAGKLPI 76
Query: 64 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLV 123
GVC+G Q IG+AFGG +VR+ VMHGK+S V++ + G+ GL+NP T RYHSLV
Sbjct: 77 LGVCLGHQSIGQAFGGDVVRAR-QVMHGKTSPVHHRDL---GVFTGLNNPLTVTRYHSLV 132
Query: 124 IEKESFPSDALEVTAWT--EDGL---IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNF 178
+++E+ P D LEVTAWT EDG IM RHK ++GVQFHPESI+T +G + NF
Sbjct: 133 VKRETLP-DCLEVTAWTAHEDGSVDEIMGLRHKTLN-IEGVQFHPESILTEQGHELFANF 190
Query: 179 IK 180
+K
Sbjct: 191 LK 192
|
Pseudomonas putida (taxid: 303) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|P20576|TRPG_PSEAE Anthranilate synthase component II OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=trpG PE=4 SV=2 | Back alignment and function description |
|---|
Score = 166 bits (420), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 85/184 (46%), Positives = 126/184 (68%), Gaps = 11/184 (5%)
Query: 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV 61
++Y GEL +V RNDEL+VE+++ P +++SPGP P ++G+SL + +
Sbjct: 14 NLVQYFGELKAEVKVVRNDELSVEQIEALAPERIVLSPGPCTPNEAGVSLAVIERFAGKL 73
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 121
PL GVC+G Q IG+AFGG++VR+ VMHGK+S +++ + G+ AGL+NP T RYHS
Sbjct: 74 PLLGVCLGHQSIGQAFGGEVVRAR-QVMHGKTSPIHHKDL---GVFAGLANPLTVTRYHS 129
Query: 122 LVIEKESFPSDALEVTAWTE--DGL---IMAARHKKYKHLQGVQFHPESIITTEGKTIVR 176
LV+++ES P + LEVTAWT+ DG IM RHK +++GVQFHPESI+T +G ++
Sbjct: 130 LVVKRESLP-ECLEVTAWTQHADGSLDEIMGVRHKTL-NVEGVQFHPESILTEQGHELLA 187
Query: 177 NFIK 180
NF++
Sbjct: 188 NFLR 191
|
Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|P28819|PABA_BACSU Para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II OS=Bacillus subtilis (strain 168) GN=pabA PE=4 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (415), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/186 (45%), Positives = 124/186 (66%), Gaps = 7/186 (3%)
Query: 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV 61
++Y+GELG V RND +T++E++ +P ++ISPGP +P ++GISL+ + +
Sbjct: 14 NLVQYLGELGEELVVKRNDSITIDEIEELSPDFLMISPGPCSPDEAGISLEAIKHFAGKI 73
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 121
P+FGVC+G Q I + FGG +VR+ +MHGK+S + +D K + GL NP A RYHS
Sbjct: 74 PIFGVCLGHQSIAQVFGGDVVRAE-RLMHGKTSDIEHDGK---TIFEGLKNPLVATRYHS 129
Query: 122 LVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
L+++ E+ PS VTA T++G IMA RH ++GVQFHPESI+T+ GK ++RNFI+
Sbjct: 130 LIVKPETLPS-CFTVTAQTKEGEIMAIRHNDLP-IEGVQFHPESIMTSFGKEMLRNFIET 187
Query: 182 IVRKEA 187
RKE
Sbjct: 188 -YRKEV 192
|
Catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine and also involved in the synthesis of anthranilate. Bacillus subtilis (strain 168) (taxid: 224308) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|P00902|TRPG_ACIAD Anthranilate synthase component 2 OS=Acinetobacter sp. (strain ADP1) GN=trpG PE=4 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 124/185 (67%), Gaps = 11/185 (5%)
Query: 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV 61
++Y GEL +V RND++T+E+++R P+ +++ PGP +P ++GIS+ + +
Sbjct: 14 NIVQYFGELNQDVKVVRNDQVTLEDIERWQPKYLVVGPGPCSPTEAGISIPAIHHFAGRI 73
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 121
PL GVC+G Q IG+AFGG I+R+ VMHG+ S +Y+ +K G+ + L +PF+A RYHS
Sbjct: 74 PLLGVCLGHQAIGQAFGGNIIRAKT-VMHGRLSDMYHTDK---GIFSNLPSPFSATRYHS 129
Query: 122 LVIEKESFPSDALEVTAWT--EDGL---IMAARHKKYKHLQGVQFHPESIITTEGKTIVR 176
LVIE+ES P + LEVT WT DG IM +HK ++GVQFHPESI++ G I +
Sbjct: 130 LVIEQESLP-ECLEVTCWTNQNDGSIEEIMGVKHKTLP-VEGVQFHPESILSQHGHQIFK 187
Query: 177 NFIKM 181
NF+++
Sbjct: 188 NFLEI 192
|
Acinetobacter sp. (strain ADP1) (taxid: 62977) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|P26922|TRPG_AZOBR Anthranilate synthase component 2 OS=Azospirillum brasilense GN=trpG PE=4 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (404), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 86/188 (45%), Positives = 116/188 (61%), Gaps = 7/188 (3%)
Query: 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTV-LELGPT 60
+ Y+GELG +V RND LTVEE P G+++SPGP P +GI L +
Sbjct: 14 NLVHYLGELGAELDVRRNDSLTVEEAMALRPEGIVLSPGPCDPDKAGICLPLIDAAAKAA 73
Query: 61 VPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYH 120
VPL GVC+G Q IG+ FGG +VR+P+ MHGK +++ + G+L L +PF A RYH
Sbjct: 74 VPLMGVCLGHQAIGQPFGGTVVRAPVP-MHGKVDRMFHQGR---GVLKDLPSPFRATRYH 129
Query: 121 SLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180
SL++E+ + P+ LEVT TEDGLIMA H++ + GVQFHPESI + G I+ NF+
Sbjct: 130 SLIVERATLPA-CLEVTGETEDGLIMALSHRELP-IHGVQFHPESIESEHGHKILENFLN 187
Query: 181 MIVRKEAA 188
R E A
Sbjct: 188 TTRRLETA 195
|
Participates in the tryptophan-dependent indole-3-acetic acid production, which is a phytohormone released by A.brasilense. Azospirillum brasilense (taxid: 192) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 EC: 7 |
| >sp|P00903|PABA_ECOLI Para-aminobenzoate synthase glutamine amidotransferase component II OS=Escherichia coli (strain K12) GN=pabA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (396), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 117/175 (66%), Gaps = 6/175 (3%)
Query: 5 KYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 64
+Y ELG V RND LT+ ++ P+ ++ISPGP P ++GISL + +P+
Sbjct: 17 QYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPIL 76
Query: 65 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVI 124
GVC+G Q + +AFGGK+VR+ VMHGK+S + ++ GE G+ GL+NP T RYHSLV+
Sbjct: 77 GVCLGHQAMAQAFGGKVVRAA-KVMHGKTSPITHN--GE-GVFRGLANPLTVTRYHSLVV 132
Query: 125 EKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179
E +S P+ +VTAW+E IM RH+++ L+GVQFHPESI++ +G ++ NF+
Sbjct: 133 EPDSLPA-CFDVTAWSETREIMGIRHRQWD-LEGVQFHPESILSEQGHQLLANFL 185
|
Catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 8 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 192 | ||||||
| 356558733 | 272 | PREDICTED: anthranilate synthase compone | 0.984 | 0.694 | 0.888 | 6e-96 | |
| 356558731 | 278 | PREDICTED: anthranilate synthase compone | 0.984 | 0.679 | 0.888 | 8e-96 | |
| 356521181 | 276 | PREDICTED: anthranilate synthase compone | 0.984 | 0.684 | 0.888 | 3e-95 | |
| 224108213 | 276 | anthranilate synthase, beta subunit, ASB | 0.989 | 0.688 | 0.869 | 6e-94 | |
| 334182853 | 289 | anthranilate synthase beta subunit 1 [Ar | 0.963 | 0.640 | 0.870 | 7e-94 | |
| 297845630 | 277 | hypothetical protein ARALYDRAFT_472860 [ | 0.968 | 0.671 | 0.865 | 1e-93 | |
| 217072976 | 270 | unknown [Medicago truncatula] gi|3884985 | 0.984 | 0.7 | 0.851 | 3e-93 | |
| 255573238 | 281 | Anthranilate synthase component II, puta | 0.989 | 0.676 | 0.858 | 4e-93 | |
| 224101933 | 240 | anthranilate synthase, beta subunit, ASB | 0.968 | 0.775 | 0.881 | 7e-93 | |
| 15222532 | 276 | anthranilate synthase beta subunit 1 [Ar | 0.968 | 0.673 | 0.854 | 9e-93 |
| >gi|356558733|ref|XP_003547657.1| PREDICTED: anthranilate synthase component II-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 355 bits (910), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 168/189 (88%), Positives = 176/189 (93%)
Query: 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV 61
+YMGELG+HFEVYRNDELTVEEL+RKNPRGVLISPGPG PQDSGISLQTVLELGPTV
Sbjct: 84 NLCQYMGELGFHFEVYRNDELTVEELRRKNPRGVLISPGPGEPQDSGISLQTVLELGPTV 143
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 121
PLFGVCMGLQCIGEAFGGKIVRSP GVMHGKSS+VYYDEKGEDGLLAGLSNPF AGRYHS
Sbjct: 144 PLFGVCMGLQCIGEAFGGKIVRSPHGVMHGKSSMVYYDEKGEDGLLAGLSNPFLAGRYHS 203
Query: 122 LVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
LVIEKESFP D LE TAWTEDGLIMAARHKKYKHLQGVQFHPESIIT EGKTIVRNF+K+
Sbjct: 204 LVIEKESFPHDELEATAWTEDGLIMAARHKKYKHLQGVQFHPESIITPEGKTIVRNFVKL 263
Query: 182 IVRKEAADS 190
I ++EA S
Sbjct: 264 IEKREAGGS 272
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558731|ref|XP_003547656.1| PREDICTED: anthranilate synthase component II-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 354 bits (909), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 168/189 (88%), Positives = 176/189 (93%)
Query: 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV 61
+YMGELG+HFEVYRNDELTVEEL+RKNPRGVLISPGPG PQDSGISLQTVLELGPTV
Sbjct: 90 NLCQYMGELGFHFEVYRNDELTVEELRRKNPRGVLISPGPGEPQDSGISLQTVLELGPTV 149
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 121
PLFGVCMGLQCIGEAFGGKIVRSP GVMHGKSS+VYYDEKGEDGLLAGLSNPF AGRYHS
Sbjct: 150 PLFGVCMGLQCIGEAFGGKIVRSPHGVMHGKSSMVYYDEKGEDGLLAGLSNPFLAGRYHS 209
Query: 122 LVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
LVIEKESFP D LE TAWTEDGLIMAARHKKYKHLQGVQFHPESIIT EGKTIVRNF+K+
Sbjct: 210 LVIEKESFPHDELEATAWTEDGLIMAARHKKYKHLQGVQFHPESIITPEGKTIVRNFVKL 269
Query: 182 IVRKEAADS 190
I ++EA S
Sbjct: 270 IEKREAGGS 278
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521181|ref|XP_003529236.1| PREDICTED: anthranilate synthase component II-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 168/189 (88%), Positives = 175/189 (92%)
Query: 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV 61
+YMGELG+HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV
Sbjct: 88 NLCQYMGELGFHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV 147
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 121
PLFGVCMGLQCIGEAFGGKIVR+P GVMHGKSS+VYYDEKGEDG+LAGLSNPF AGRYHS
Sbjct: 148 PLFGVCMGLQCIGEAFGGKIVRAPHGVMHGKSSMVYYDEKGEDGVLAGLSNPFLAGRYHS 207
Query: 122 LVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
LVIEK SFP D LEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIIT EGKTIV NF+K+
Sbjct: 208 LVIEKGSFPDDELEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITPEGKTIVHNFVKL 267
Query: 182 IVRKEAADS 190
I R EA S
Sbjct: 268 IERSEAVGS 276
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224108213|ref|XP_002314761.1| anthranilate synthase, beta subunit, ASB1 [Populus trichocarpa] gi|222863801|gb|EEF00932.1| anthranilate synthase, beta subunit, ASB1 [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 348 bits (893), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 166/191 (86%), Positives = 177/191 (92%), Gaps = 1/191 (0%)
Query: 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV 61
+YMGE+G HFEVYRNDELTVE+L+RK PRGVLISPGPG PQDSGISLQTVLELGPTV
Sbjct: 87 NLCQYMGEVGCHFEVYRNDELTVEDLERKKPRGVLISPGPGTPQDSGISLQTVLELGPTV 146
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 121
PLFGVCMGLQCIGEAFGGKIVRSP GV+HGK S VYYDEKGEDGL AGLSNPFTAGRYHS
Sbjct: 147 PLFGVCMGLQCIGEAFGGKIVRSPYGVVHGKGSPVYYDEKGEDGLFAGLSNPFTAGRYHS 206
Query: 122 LVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
LVIEKESFP + LEVTAWTEDGLIMAARH+KYKHLQGVQFHPESIIT+EGKTIVRNFIKM
Sbjct: 207 LVIEKESFPGEELEVTAWTEDGLIMAARHRKYKHLQGVQFHPESIITSEGKTIVRNFIKM 266
Query: 182 IVRKEAADSQN 192
+ RKE A+S+N
Sbjct: 267 VERKE-AESEN 276
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334182853|ref|NP_001185092.1| anthranilate synthase beta subunit 1 [Arabidopsis thaliana] gi|332192469|gb|AEE30590.1| anthranilate synthase beta subunit 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 348 bits (893), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 161/185 (87%), Positives = 176/185 (95%)
Query: 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP 62
FL+YMGELG HFEVYRNDELTVEELK+KNPRGVLISPGPG PQDSGISLQTVLELGP VP
Sbjct: 101 FLQYMGELGCHFEVYRNDELTVEELKKKNPRGVLISPGPGTPQDSGISLQTVLELGPLVP 160
Query: 63 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSL 122
LFGVCMGLQCIGEAFGGKIVRSP GVMHGKSS+V+YDEKGE+GL +GLSNPF GRYHSL
Sbjct: 161 LFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHSL 220
Query: 123 VIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182
VIEK++FPSD LEVTAWTEDGL+MAARH+KYKH+QGVQFHPESIITTEGKTIVRNFIK++
Sbjct: 221 VIEKDTFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIV 280
Query: 183 VRKEA 187
+KE+
Sbjct: 281 EKKES 285
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297845630|ref|XP_002890696.1| hypothetical protein ARALYDRAFT_472860 [Arabidopsis lyrata subsp. lyrata] gi|297336538|gb|EFH66955.1| hypothetical protein ARALYDRAFT_472860 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 161/186 (86%), Positives = 173/186 (93%)
Query: 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV 61
+YMGELG HFEVYRNDELTVEELK KNPRGVLISPGPG PQDSGISLQTVLELGP V
Sbjct: 88 NLCQYMGELGCHFEVYRNDELTVEELKNKNPRGVLISPGPGTPQDSGISLQTVLELGPRV 147
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 121
PLFGVCMGLQCIGEAFGGKIVRSP GVMHGKSS+VYYDEKGE+GL +GLSNPF GRYHS
Sbjct: 148 PLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVYYDEKGEEGLFSGLSNPFLVGRYHS 207
Query: 122 LVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
LVIEK+SFPSD LEVTAWTEDGL+MAARH+KYKH+QGVQFHPESIITTEGKTIVRNFIK+
Sbjct: 208 LVIEKDSFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKL 267
Query: 182 IVRKEA 187
+ +KE+
Sbjct: 268 VEKKES 273
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217072976|gb|ACJ84848.1| unknown [Medicago truncatula] gi|388498572|gb|AFK37352.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 346 bits (887), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 161/189 (85%), Positives = 174/189 (92%)
Query: 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV 61
+Y+GELG HFEVYRNDELTVEELKRKNPRGVLISPGPG PQDSGISLQTV ELGPT+
Sbjct: 82 NLCQYIGELGVHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVFELGPTI 141
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 121
P+FGVCMGLQC+GEAFGGKI+R+P GVMHGKSSLVYYDEKGEDGLLAGL NPF AGRYHS
Sbjct: 142 PVFGVCMGLQCMGEAFGGKIIRAPSGVMHGKSSLVYYDEKGEDGLLAGLPNPFLAGRYHS 201
Query: 122 LVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
LVIEKESFP D LEVTAWTEDGLIMAARHKKY+H+QGVQFHPESIIT +GKTIV NF+K+
Sbjct: 202 LVIEKESFPDDELEVTAWTEDGLIMAARHKKYRHMQGVQFHPESIITPDGKTIVHNFVKL 261
Query: 182 IVRKEAADS 190
I +KEAA S
Sbjct: 262 IEKKEAARS 270
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255573238|ref|XP_002527548.1| Anthranilate synthase component II, putative [Ricinus communis] gi|223533098|gb|EEF34857.1| Anthranilate synthase component II, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 345 bits (886), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 164/191 (85%), Positives = 178/191 (93%), Gaps = 1/191 (0%)
Query: 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV 61
+YMGELG +FEVYRNDELTVEELKRKNPRGVLISPGPG P+DSGISL+TVLELGP V
Sbjct: 92 NLCQYMGELGCYFEVYRNDELTVEELKRKNPRGVLISPGPGEPRDSGISLETVLELGPLV 151
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 121
PLFGVCMGLQCIGEAFGGKIVRSP GVMHGKSS VYYDEKGEDGL +GLSNPFTAGRYHS
Sbjct: 152 PLFGVCMGLQCIGEAFGGKIVRSPYGVMHGKSSPVYYDEKGEDGLFSGLSNPFTAGRYHS 211
Query: 122 LVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
LVIE +SFP++ LE+TAWTEDGLIMAARHKKYKHLQGVQFHPESIIT+EGKTIV+NFIK+
Sbjct: 212 LVIENDSFPTEELEITAWTEDGLIMAARHKKYKHLQGVQFHPESIITSEGKTIVQNFIKL 271
Query: 182 IVRKEAADSQN 192
+ RKE A+SQN
Sbjct: 272 VERKE-AESQN 281
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224101933|ref|XP_002312481.1| anthranilate synthase, beta subunit, ASB2 [Populus trichocarpa] gi|222852301|gb|EEE89848.1| anthranilate synthase, beta subunit, ASB2 [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 345 bits (884), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 164/186 (88%), Positives = 172/186 (92%)
Query: 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV 61
+YMGELG HFEVYRNDELTVE+LKRK PRGVLISPGPG PQDSGISLQTVLELGPTV
Sbjct: 54 NLCQYMGELGCHFEVYRNDELTVEDLKRKKPRGVLISPGPGTPQDSGISLQTVLELGPTV 113
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 121
PLFGVCMGLQCIGEAFGGK+VRSP GV+HGK S VYYDEKGEDGL +GLSNPFTAGRYHS
Sbjct: 114 PLFGVCMGLQCIGEAFGGKVVRSPYGVVHGKGSPVYYDEKGEDGLFSGLSNPFTAGRYHS 173
Query: 122 LVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
LVIEKESFPS+ LEVTAWTEDGLIMAARH+KYKHLQGVQFHPESIIT+EGK IV NFIKM
Sbjct: 174 LVIEKESFPSEELEVTAWTEDGLIMAARHRKYKHLQGVQFHPESIITSEGKIIVSNFIKM 233
Query: 182 IVRKEA 187
I RKEA
Sbjct: 234 IERKEA 239
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222532|ref|NP_173893.1| anthranilate synthase beta subunit 1 [Arabidopsis thaliana] gi|11067285|gb|AAG28813.1|AC079374_16 anthranilate synthase beta subunit [Arabidopsis thaliana] gi|403434|gb|AAA32742.1| anthranilate synthase beta subunit [Arabidopsis thaliana] gi|20466736|gb|AAM20685.1| anthranilate synthase beta subunit [Arabidopsis thaliana] gi|30023756|gb|AAP13411.1| At1g25220 [Arabidopsis thaliana] gi|110741096|dbj|BAE98642.1| hypothetical protein [Arabidopsis thaliana] gi|332192468|gb|AEE30589.1| anthranilate synthase beta subunit 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 344 bits (883), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 159/186 (85%), Positives = 174/186 (93%)
Query: 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTV 61
+YMGELG HFEVYRNDELTVEELK+KNPRGVLISPGPG PQDSGISLQTVLELGP V
Sbjct: 87 NLCQYMGELGCHFEVYRNDELTVEELKKKNPRGVLISPGPGTPQDSGISLQTVLELGPLV 146
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 121
PLFGVCMGLQCIGEAFGGKIVRSP GVMHGKSS+V+YDEKGE+GL +GLSNPF GRYHS
Sbjct: 147 PLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHS 206
Query: 122 LVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
LVIEK++FPSD LEVTAWTEDGL+MAARH+KYKH+QGVQFHPESIITTEGKTIVRNFIK+
Sbjct: 207 LVIEKDTFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKI 266
Query: 182 IVRKEA 187
+ +KE+
Sbjct: 267 VEKKES 272
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 192 | ||||||
| TAIR|locus:2826037 | 235 | AT1G24807 [Arabidopsis thalian | 0.963 | 0.787 | 0.864 | 1.3e-86 | |
| TAIR|locus:2174378 | 273 | AT5G57890 [Arabidopsis thalian | 0.953 | 0.670 | 0.868 | 3.3e-86 | |
| TAIR|locus:2826092 | 222 | AT1G24909 [Arabidopsis thalian | 0.953 | 0.824 | 0.863 | 1.4e-85 | |
| TAIR|locus:2826077 | 222 | AT1G25083 [Arabidopsis thalian | 0.953 | 0.824 | 0.863 | 1.4e-85 | |
| TAIR|locus:2825965 | 222 | AT1G25155 [Arabidopsis thalian | 0.953 | 0.824 | 0.863 | 1.4e-85 | |
| TIGR_CMR|BA_0069 | 195 | BA_0069 "para-aminobenzoate sy | 0.890 | 0.876 | 0.463 | 1.4e-41 | |
| TIGR_CMR|CHY_1586 | 189 | CHY_1586 "para-aminobenzoate/a | 0.890 | 0.904 | 0.474 | 1.4e-41 | |
| UNIPROTKB|Q74AH3 | 190 | trpG "Anthranilate synthase, g | 0.895 | 0.905 | 0.477 | 2.8e-41 | |
| TIGR_CMR|GSU_2382 | 190 | GSU_2382 "anthranilate synthas | 0.895 | 0.905 | 0.477 | 2.8e-41 | |
| UNIPROTKB|Q5LRH9 | 193 | trpG "Anthranilate synthase co | 0.890 | 0.886 | 0.505 | 3.6e-41 |
| TAIR|locus:2826037 AT1G24807 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 160/185 (86%), Positives = 175/185 (94%)
Query: 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP 62
FL+YMGEL HFEVYRNDELTVEELKRKNPRGVLISPGPG PQDSGISLQTVLELGP VP
Sbjct: 47 FLQYMGELQCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVP 106
Query: 63 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSL 122
LFGVCMGLQCIGEAFGGKIVRSP GVMHGKSS+V+YDEKGE+GL +GLSNPF GRYHSL
Sbjct: 107 LFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHSL 166
Query: 123 VIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182
VIEK++FPSD LEVTAWTEDGL+MAARH+KYKH+QGVQFHPESIITTEGKTIVRNFIK++
Sbjct: 167 VIEKDTFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIV 226
Query: 183 VRKEA 187
+K++
Sbjct: 227 EKKDS 231
|
|
| TAIR|locus:2174378 AT5G57890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
Identities = 159/183 (86%), Positives = 173/183 (94%)
Query: 5 KYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 64
+YMGELG HFEVYRNDELTVEELKRK PRG+LISPGPG PQDSGISLQTVLELGP VPLF
Sbjct: 87 QYMGELGCHFEVYRNDELTVEELKRKKPRGLLISPGPGTPQDSGISLQTVLELGPLVPLF 146
Query: 65 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVI 124
GVCMGLQCIGEAFGGKIVRSP GVMHGKSS+V+YDEKGE+GL +GLSNPF GRYHSLVI
Sbjct: 147 GVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFSGLSNPFLVGRYHSLVI 206
Query: 125 EKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 184
EK+SFPSD LEVTAWTEDGL+MAARH+KYKH+QGVQFHPESIITTEGKTIVRNFIK++ +
Sbjct: 207 EKDSFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKLVEK 266
Query: 185 KEA 187
KE+
Sbjct: 267 KES 269
|
|
| TAIR|locus:2826092 AT1G24909 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
Identities = 158/183 (86%), Positives = 173/183 (94%)
Query: 5 KYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 64
+YMGEL HFEVYRNDELTVEELKRKNPRGVLISPGPG PQDSGISLQTVLELGP VPLF
Sbjct: 36 QYMGELQCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLF 95
Query: 65 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVI 124
GVCMGLQCIGEAFGGKIVRSP GVMHGKSS+V+YDEKGE+GL +GLSNPF GRYHSLVI
Sbjct: 96 GVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHSLVI 155
Query: 125 EKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 184
EK++FPSD LEVTAWTEDGL+MAARH+KYKH+QGVQFHPESIITTEGKTIVRNFIK++ +
Sbjct: 156 EKDTFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIVEK 215
Query: 185 KEA 187
K++
Sbjct: 216 KDS 218
|
|
| TAIR|locus:2826077 AT1G25083 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
Identities = 158/183 (86%), Positives = 173/183 (94%)
Query: 5 KYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 64
+YMGEL HFEVYRNDELTVEELKRKNPRGVLISPGPG PQDSGISLQTVLELGP VPLF
Sbjct: 36 QYMGELQCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLF 95
Query: 65 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVI 124
GVCMGLQCIGEAFGGKIVRSP GVMHGKSS+V+YDEKGE+GL +GLSNPF GRYHSLVI
Sbjct: 96 GVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHSLVI 155
Query: 125 EKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 184
EK++FPSD LEVTAWTEDGL+MAARH+KYKH+QGVQFHPESIITTEGKTIVRNFIK++ +
Sbjct: 156 EKDTFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIVEK 215
Query: 185 KEA 187
K++
Sbjct: 216 KDS 218
|
|
| TAIR|locus:2825965 AT1G25155 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
Identities = 158/183 (86%), Positives = 173/183 (94%)
Query: 5 KYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 64
+YMGEL HFEVYRNDELTVEELKRKNPRGVLISPGPG PQDSGISLQTVLELGP VPLF
Sbjct: 36 QYMGELQCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLF 95
Query: 65 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVI 124
GVCMGLQCIGEAFGGKIVRSP GVMHGKSS+V+YDEKGE+GL +GLSNPF GRYHSLVI
Sbjct: 96 GVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHSLVI 155
Query: 125 EKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 184
EK++FPSD LEVTAWTEDGL+MAARH+KYKH+QGVQFHPESIITTEGKTIVRNFIK++ +
Sbjct: 156 EKDTFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIVEK 215
Query: 185 KEA 187
K++
Sbjct: 216 KDS 218
|
|
| TIGR_CMR|BA_0069 BA_0069 "para-aminobenzoate synthase glutamine amidotransferase, component II" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 82/177 (46%), Positives = 127/177 (71%)
Query: 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 63
++++GELG V RNDE+T+ +++ P ++ISPGP +P ++GIS+ + +P+
Sbjct: 16 VQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMDVIRYFAGKIPI 75
Query: 64 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLV 123
FGVC+G Q I + FGG++VR+ +MHGK+S +++D K + + + NPFTA RYHSL+
Sbjct: 76 FGVCLGHQSIAQVFGGEVVRAER-LMHGKTSPMHHDGKT---IFSDIPNPFTATRYHSLI 131
Query: 124 IEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180
++KE+ P D LEVT+WTE+G IMA RH ++GVQFHPESI+T+ GK +++NFI+
Sbjct: 132 VKKETLP-DCLEVTSWTEEGEIMALRHTTLP-IEGVQFHPESIMTSHGKELLQNFIR 186
|
|
| TIGR_CMR|CHY_1586 CHY_1586 "para-aminobenzoate/anthranilate synthase glutamine amidotransferase, component II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 84/177 (47%), Positives = 123/177 (69%)
Query: 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 63
++Y+GELG+ V RND +T+ E++ P ++ISPGP P ++GISL V +P+
Sbjct: 16 VQYLGELGHRVVVRRNDRITLSEIREMKPTHIIISPGPCTPNEAGISLDVVRFFAGKIPI 75
Query: 64 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLV 123
GVC+G Q IG+AFGGK+++ + V HGK+SL+Y+D G+ G+ GL NPF A RYHSLV
Sbjct: 76 LGVCLGHQVIGQAFGGKVIQDKIPV-HGKTSLIYHD--GQ-GIYKGLPNPFRATRYHSLV 131
Query: 124 IEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180
+EKE P + + +TA T +G IM RH+ + ++GVQFHPESI+T GK ++ NF++
Sbjct: 132 VEKEGLPQELI-ITATTAEGTIMGIRHRTWA-IEGVQFHPESIMTEYGKELLLNFLE 186
|
|
| UNIPROTKB|Q74AH3 trpG "Anthranilate synthase, glutamine amidotransferase subunit" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 85/178 (47%), Positives = 125/178 (70%)
Query: 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 63
++Y GELG V+RND +T++E++ PR ++ISPGP +P+++GIS+ + +P+
Sbjct: 16 VQYFGELGEDVRVFRNDGITLDEIEALAPRRLVISPGPCSPEEAGISVAAIRHFAGKIPI 75
Query: 64 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLV 123
GVC+G Q IG AFGG +VRS +MHGK+S ++++ G+ GL GL NPF A RYHSLV
Sbjct: 76 LGVCLGHQSIGAAFGGTVVRSST-LMHGKTSPIHHN--GQ-GLFRGLPNPFNATRYHSLV 131
Query: 124 IEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
+E+ S P D LE+TAW E+G IM H++ + GVQFHPESI+T G ++RNF+++
Sbjct: 132 VERASLP-DCLEITAWVEEGEIMGLAHRELP-VWGVQFHPESILTEGGMDLLRNFLEI 187
|
|
| TIGR_CMR|GSU_2382 GSU_2382 "anthranilate synthase component II" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 85/178 (47%), Positives = 125/178 (70%)
Query: 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 63
++Y GELG V+RND +T++E++ PR ++ISPGP +P+++GIS+ + +P+
Sbjct: 16 VQYFGELGEDVRVFRNDGITLDEIEALAPRRLVISPGPCSPEEAGISVAAIRHFAGKIPI 75
Query: 64 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLV 123
GVC+G Q IG AFGG +VRS +MHGK+S ++++ G+ GL GL NPF A RYHSLV
Sbjct: 76 LGVCLGHQSIGAAFGGTVVRSST-LMHGKTSPIHHN--GQ-GLFRGLPNPFNATRYHSLV 131
Query: 124 IEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
+E+ S P D LE+TAW E+G IM H++ + GVQFHPESI+T G ++RNF+++
Sbjct: 132 VERASLP-DCLEITAWVEEGEIMGLAHRELP-VWGVQFHPESILTEGGMDLLRNFLEI 187
|
|
| UNIPROTKB|Q5LRH9 trpG "Anthranilate synthase component II" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 90/178 (50%), Positives = 116/178 (65%)
Query: 6 YMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPT-VPLF 64
Y+GELG EV RND L V+E NP G+L+SPGP P +GI L T PL
Sbjct: 18 YLGELGAEIEVRRNDALNVQEAMAMNPAGILLSPGPCDPDQAGICLALTEAAAETRTPLL 77
Query: 65 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVI 124
GVC+G Q IG+AFGGK+VR ++HGK +++ KG L AGL +PF A RYHSLV+
Sbjct: 78 GVCLGHQTIGQAFGGKVVRCH-EIVHGKMGQMHHSAKG---LFAGLPSPFEATRYHSLVV 133
Query: 125 EKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182
E++S P D LEVTAW EDG IM +HK+ + GVQFHPESI + G ++RNF+ ++
Sbjct: 134 ERDSLP-DCLEVTAWLEDGTIMGLQHKELP-IHGVQFHPESIASEHGHALLRNFLDVM 189
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P00902 | TRPG_ACIAD | 4, ., 1, ., 3, ., 2, 7 | 0.4432 | 0.9062 | 0.8969 | yes | no |
| P00901 | TRPG_PSEPU | 4, ., 1, ., 3, ., 2, 7 | 0.4725 | 0.8906 | 0.8636 | yes | no |
| P28819 | PABA_BACSU | 4, ., 1, ., 3, ., 2, 7 | 0.4516 | 0.9322 | 0.9226 | yes | no |
| Q57690 | TRPG_METJA | 4, ., 1, ., 3, ., 2, 7 | 0.4095 | 0.875 | 0.8527 | yes | no |
| Q9YGB2 | TRPG_PYRKO | 4, ., 1, ., 3, ., 2, 7 | 0.4179 | 0.8854 | 0.8854 | yes | no |
| P26923 | TRPG_METTM | 4, ., 1, ., 3, ., 2, 7 | 0.4235 | 0.8177 | 0.8010 | yes | no |
| P26922 | TRPG_AZOBR | 4, ., 1, ., 3, ., 2, 7 | 0.4574 | 0.9427 | 0.9234 | yes | no |
| P06193 | PABA_SALTY | 2, ., 6, ., 1, ., 8, 5 | 0.4204 | 0.8854 | 0.9090 | yes | no |
| P48261 | TRPG_CYAPA | 4, ., 1, ., 3, ., 2, 7 | 0.5449 | 0.9010 | 0.9105 | N/A | no |
| O27693 | TRPG_METTH | 4, ., 1, ., 3, ., 2, 7 | 0.4319 | 0.8229 | 0.8061 | yes | no |
| P71381 | TRPG_HAEIN | 4, ., 1, ., 3, ., 2, 7 | 0.3519 | 0.8697 | 0.8652 | yes | no |
| Q5V632 | TRPG2_HALMA | 4, ., 1, ., 3, ., 2, 7 | 0.4 | 0.9062 | 0.9157 | yes | no |
| P20576 | TRPG_PSEAE | 4, ., 1, ., 3, ., 2, 7 | 0.4619 | 0.9010 | 0.8606 | yes | no |
| P05379 | TRPG_THET8 | 4, ., 1, ., 3, ., 2, 7 | 0.4340 | 0.8906 | 0.8382 | yes | no |
| Q06129 | TRPG_SULSO | 4, ., 1, ., 3, ., 2, 7 | 0.4189 | 0.8958 | 0.8820 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| ASB1 | anthranilate synthase, beta subunit, ASB1 (EC-4.1.3.27) (276 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| gw1.XII.1858.1 | anthranilate phosphoribosyltransferase (EC-2.4.2.18) (334 aa) | • | • | • | • | • | 0.998 | ||||
| gw1.10136.5.1 | annotation not avaliable (270 aa) | • | • | • | • | • | • | 0.972 | |||
| CS1 | chorismate synthase (EC-4.2.3.5) (438 aa) | • | • | • | • | 0.949 | |||||
| CS2 | RecName- Full=Chorismate synthase; EC=4.2.3.5; (437 aa) | • | • | • | • | 0.948 | |||||
| fgenesh4_pg.C_scaffold_1312000004 | Predicted protein (245 aa) | • | • | • | • | • | 0.938 | ||||
| ASA2 | anthranilate synthase, alpha subunit 2 (EC-4.1.3.27) (530 aa) | • | • | • | • | • | • | 0.936 | |||
| ASA1 | anthranilate synthase, alpha subunit 1 (EC-4.1.3.27) (532 aa) | • | • | • | • | • | • | 0.932 | |||
| estExt_fgenesh4_pm.C_LG_XIV0483 | indole-3-glycerol-phosphate synthase (EC-4.1.1.48) (259 aa) | • | • | • | • | • | 0.929 | ||||
| CM1|CM | chorismate mutase (EC-5.4.99.5) (258 aa) | • | 0.899 | ||||||||
| CM1 | chorismate mutase (EC-5.4.99.5) (257 aa) | • | 0.899 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 192 | |||
| PLN02335 | 222 | PLN02335, PLN02335, anthranilate synthase | 1e-139 | |
| PRK05670 | 189 | PRK05670, PRK05670, anthranilate synthase componen | 5e-88 | |
| cd01743 | 184 | cd01743, GATase1_Anthranilate_Synthase, Type 1 glu | 2e-80 | |
| CHL00101 | 190 | CHL00101, trpG, anthranilate synthase component 2 | 2e-79 | |
| COG0512 | 191 | COG0512, PabA, Anthranilate/para-aminobenzoate syn | 2e-78 | |
| PRK07649 | 195 | PRK07649, PRK07649, para-aminobenzoate/anthranilat | 9e-66 | |
| PRK14607 | 534 | PRK14607, PRK14607, bifunctional glutamine amidotr | 2e-64 | |
| PRK07765 | 214 | PRK07765, PRK07765, para-aminobenzoate synthase co | 4e-60 | |
| pfam00117 | 186 | pfam00117, GATase, Glutamine amidotransferase clas | 3e-57 | |
| PRK08007 | 187 | PRK08007, PRK08007, para-aminobenzoate synthase co | 2e-55 | |
| TIGR00566 | 188 | TIGR00566, trpG_papA, glutamine amidotransferase o | 2e-54 | |
| PRK06774 | 191 | PRK06774, PRK06774, para-aminobenzoate synthase co | 1e-53 | |
| PRK08857 | 193 | PRK08857, PRK08857, para-aminobenzoate synthase co | 3e-51 | |
| PRK13566 | 720 | PRK13566, PRK13566, anthranilate synthase; Provisi | 5e-44 | |
| TIGR01815 | 717 | TIGR01815, TrpE-clade3, anthranilate synthase, alp | 9e-33 | |
| PRK09522 | 531 | PRK09522, PRK09522, bifunctional glutamine amidotr | 3e-28 | |
| PRK06895 | 190 | PRK06895, PRK06895, putative anthranilate synthase | 1e-24 | |
| TIGR00888 | 188 | TIGR00888, guaA_Nterm, GMP synthase (glutamine-hyd | 4e-24 | |
| cd01742 | 181 | cd01742, GATase1_GMP_Synthase, Type 1 glutamine am | 5e-23 | |
| PRK05637 | 208 | PRK05637, PRK05637, anthranilate synthase componen | 2e-22 | |
| PRK00074 | 511 | PRK00074, guaA, GMP synthase; Reviewed | 7e-22 | |
| PLN02889 | 918 | PLN02889, PLN02889, oxo-acid-lyase/anthranilate sy | 5e-21 | |
| TIGR01823 | 742 | TIGR01823, PabB-fungal, aminodeoxychorismate synth | 8e-20 | |
| PRK00758 | 184 | PRK00758, PRK00758, GMP synthase subunit A; Valida | 1e-17 | |
| cd01744 | 178 | cd01744, GATase1_CPSase, Small chain of the glutam | 2e-16 | |
| COG0518 | 198 | COG0518, GuaA, GMP synthase - Glutamine amidotrans | 6e-16 | |
| TIGR01368 | 358 | TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synt | 1e-14 | |
| PRK12838 | 354 | PRK12838, PRK12838, carbamoyl phosphate synthase s | 1e-14 | |
| cd01741 | 188 | cd01741, GATase1_1, Subgroup of proteins having th | 5e-13 | |
| PRK12564 | 360 | PRK12564, PRK12564, carbamoyl phosphate synthase s | 3e-12 | |
| PLN02771 | 415 | PLN02771, PLN02771, carbamoyl-phosphate synthase ( | 1e-11 | |
| COG0505 | 368 | COG0505, CarA, Carbamoylphosphate synthase small s | 2e-11 | |
| cd01745 | 189 | cd01745, GATase1_2, Subgroup of proteins having th | 1e-10 | |
| COG2071 | 243 | COG2071, COG2071, Predicted glutamine amidotransfe | 3e-10 | |
| PLN02347 | 536 | PLN02347, PLN02347, GMP synthetase | 6e-09 | |
| CHL00197 | 382 | CHL00197, carA, carbamoyl-phosphate synthase argin | 7e-09 | |
| PRK09065 | 237 | PRK09065, PRK09065, glutamine amidotransferase; Pr | 1e-07 | |
| pfam07722 | 219 | pfam07722, Peptidase_C26, Peptidase C26 | 2e-07 | |
| TIGR01855 | 196 | TIGR01855, IMP_synth_hisH, imidazole glycerol phos | 7e-06 | |
| cd03128 | 92 | cd03128, GAT_1, Type 1 glutamine amidotransferase | 5e-05 | |
| cd01653 | 115 | cd01653, GATase1, Type 1 glutamine amidotransferas | 1e-04 | |
| COG0118 | 204 | COG0118, HisH, Glutamine amidotransferase [Amino a | 5e-04 | |
| PRK13141 | 205 | PRK13141, hisH, imidazole glycerol phosphate synth | 0.002 | |
| PRK08250 | 235 | PRK08250, PRK08250, glutamine amidotransferase; Pr | 0.004 |
| >gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase | Back alignment and domain information |
|---|
Score = 385 bits (991), Expect = e-139
Identities = 163/183 (89%), Positives = 174/183 (95%)
Query: 5 KYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 64
+YMGELG HFEVYRNDELTVEELKRKNPRGVLISPGPG PQDSGISLQTVLELGP VPLF
Sbjct: 36 QYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLF 95
Query: 65 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVI 124
GVCMGLQCIGEAFGGKIVRSP GVMHGKSS V+YDEKGE+GL +GL NPFTAGRYHSLVI
Sbjct: 96 GVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEKGEEGLFSGLPNPFTAGRYHSLVI 155
Query: 125 EKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 184
EK++FPSD LEVTAWTEDGLIMAARH+KYKH+QGVQFHPESIITTEGKTIVRNFIK+I +
Sbjct: 156 EKDTFPSDELEVTAWTEDGLIMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIIEK 215
Query: 185 KEA 187
KE+
Sbjct: 216 KES 218
|
Length = 222 |
| >gnl|CDD|235552 PRK05670, PRK05670, anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 5e-88
Identities = 95/176 (53%), Positives = 128/176 (72%), Gaps = 6/176 (3%)
Query: 6 YMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 65
Y+GELG VYRNDE+T+EE++ NP +++SPGPG P ++GISL+ + E VP+ G
Sbjct: 18 YLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILG 77
Query: 66 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIE 125
VC+G Q IGEAFGGK+VR+ +MHGK+S + +D G+ AGL NPFT RYHSLV++
Sbjct: 78 VCLGHQAIGEAFGGKVVRAK-EIMHGKTSPIEHDGS---GIFAGLPNPFTVTRYHSLVVD 133
Query: 126 KESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
+ES P D LEVTAWT+DG IM RHK+ + GVQFHPESI+T G ++ NF+++
Sbjct: 134 RESLP-DCLEVTAWTDDGEIMGVRHKELP-IYGVQFHPESILTEHGHKLLENFLEL 187
|
Length = 189 |
| >gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase | Back alignment and domain information |
|---|
Score = 237 bits (606), Expect = 2e-80
Identities = 94/174 (54%), Positives = 121/174 (69%), Gaps = 6/174 (3%)
Query: 6 YMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 65
Y+ ELG V RNDE+T+EEL+ NP ++ISPGPG P+D+GISL+ + L VP+ G
Sbjct: 17 YLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILG 76
Query: 66 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIE 125
VC+G Q I EAFGGK+VR+P MHGK+S +++D GL GL PFT GRYHSLV++
Sbjct: 77 VCLGHQAIAEAFGGKVVRAP-EPMHGKTSEIHHDGS---GLFKGLPQPFTVGRYHSLVVD 132
Query: 126 KESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179
+ P D LEVTA TEDG+IMA RH+ GVQFHPESI+T G ++ NF+
Sbjct: 133 PDPLP-DLLEVTASTEDGVIMALRHRDLPI-YGVQFHPESILTEYGLRLLENFL 184
|
Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the presence of phosphoribosyl-anthranilate transferase (PRTase) activity. PRTase catalyses the second step in tryptophan biosynthesis and results in the addition of 5-phosphoribosyl-1-pyrophosphate to anthranilate to create N-5'-phosphoribosyl-anthranilate. In E.coli, the first step in the conversion of chorismate to PABA involves two proteins: PabA and PabB which co-operate to transfer the amide nitrogen of glutamine to chorismate forming 4-amino-4 deoxychorismate (ADC). PabA acts as a glutamine amidotransferase, supplying an amino group to PabB, which carries out the amination reaction. A third protein PabC then mediates elimination of pyruvate and aromatization to give PABA. Several organisms have bipartite proteins containing fused domains homologous to PabA and PabB commonly called PABA synthases. These hybrid PABA synthases may produce ADC and not PABA. Length = 184 |
| >gnl|CDD|214365 CHL00101, trpG, anthranilate synthase component 2 | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 2e-79
Identities = 96/175 (54%), Positives = 127/175 (72%), Gaps = 5/175 (2%)
Query: 5 KYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 64
+ +GEL V RNDE+ + ++K N R ++ISPGPG P+DSGISL + P +P+
Sbjct: 17 QSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPIL 76
Query: 65 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVI 124
GVC+G Q IG FGGKI+++P MHGK+S +Y++ D L GL NPFTA RYHSL+I
Sbjct: 77 GVCLGHQSIGYLFGGKIIKAP-KPMHGKTSKIYHN---HDDLFQGLPNPFTATRYHSLII 132
Query: 125 EKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179
+ + PS LE+TAWTEDGLIMA RHKKYK L+G+QFHPES++TT G+ I+RNF+
Sbjct: 133 DPLNLPSP-LEITAWTEDGLIMACRHKKYKMLRGIQFHPESLLTTHGQQILRNFL 186
|
Length = 190 |
| >gnl|CDD|223586 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 2e-78
Identities = 89/178 (50%), Positives = 123/178 (69%), Gaps = 7/178 (3%)
Query: 5 KYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 64
+Y+ ELG V RND++++E ++ P ++ISPGPG P+D+GISL+ + +P+
Sbjct: 19 QYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGISLELIRRFAGRIPIL 78
Query: 65 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVI 124
GVC+G Q I EAFGGK+VR+ MHGK+S++ +D GL AGL NPFT RYHSLV+
Sbjct: 79 GVCLGHQAIAEAFGGKVVRAKE-PMHGKTSIITHDGS---GLFAGLPNPFTVTRYHSLVV 134
Query: 125 EKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
+ E+ P + LEVTA +EDG +IMA RHKK GVQFHPESI+T G I+ NF+++
Sbjct: 135 DPETLPEE-LEVTAESEDGGVIMAVRHKKLPIY-GVQFHPESILTEYGHRILENFLRL 190
|
Length = 191 |
| >gnl|CDD|181066 PRK07649, PRK07649, para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated | Back alignment and domain information |
|---|
Score = 200 bits (509), Expect = 9e-66
Identities = 84/185 (45%), Positives = 131/185 (70%), Gaps = 6/185 (3%)
Query: 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 63
++++GELG V RNDE+T+ +++ P ++ISPGP +P ++GIS++ + +P+
Sbjct: 16 VQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPI 75
Query: 64 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLV 123
FGVC+G Q I + FGG++VR+ +MHGK+SL+++D K + + + NPFTA RYHSL+
Sbjct: 76 FGVCLGHQSIAQVFGGEVVRAER-LMHGKTSLMHHDGK---TIFSDIPNPFTATRYHSLI 131
Query: 124 IEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183
++KE+ P D LEVT+WTE+G IMA RHK ++GVQFHPESI+T+ GK +++NFI+
Sbjct: 132 VKKETLP-DCLEVTSWTEEGEIMAIRHKTLP-IEGVQFHPESIMTSHGKELLQNFIRKYS 189
Query: 184 RKEAA 188
+
Sbjct: 190 PSVTS 194
|
Length = 195 |
| >gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 206 bits (527), Expect = 2e-64
Identities = 90/176 (51%), Positives = 126/176 (71%), Gaps = 7/176 (3%)
Query: 5 KYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 63
+Y+GELG EV RNDE+T+EE++ NP ++ISPGPG P+++GIS++ + VP+
Sbjct: 17 QYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGISVEVIRHFSGKVPI 76
Query: 64 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLV 123
GVC+G Q IG AFGGKIV + ++HGK+S + ++ K GL G+ NP A RYHSLV
Sbjct: 77 LGVCLGHQAIGYAFGGKIVHAKR-ILHGKTSPIDHNGK---GLFRGIPNPTVATRYHSLV 132
Query: 124 IEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179
+E+ S P + LEVTA ++DG IM RHK++ + GVQFHPESI+T EGK I++NF+
Sbjct: 133 VEEASLP-ECLEVTAKSDDGEIMGIRHKEH-PIFGVQFHPESILTEEGKRILKNFL 186
|
Length = 534 |
| >gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 4e-60
Identities = 80/178 (44%), Positives = 114/178 (64%), Gaps = 9/178 (5%)
Query: 5 KYMGELGYHFEVYRNDELTVEELKRKNPR--GVLISPGPGAPQDSGISLQTVLELGPT-V 61
+Y+G+LG EV+RND+ + + + GVL+SPGPG P+ +G S+ V
Sbjct: 18 QYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGT 77
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 121
PL GVC+G Q IG AFG + R+P ++HGK+S V++ G +LAGL +PFTA RYHS
Sbjct: 78 PLLGVCLGHQAIGVAFGATVDRAP-ELLHGKTSSVHHTGVG---VLAGLPDPFTATRYHS 133
Query: 122 LVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179
L I E+ P LEVTA T+ G+IMA RH++ + GVQFHPES++T G ++ N++
Sbjct: 134 LTILPETLP-AELEVTARTDSGVIMAVRHRELP-IHGVQFHPESVLTEGGHRMLANWL 189
|
Length = 214 |
| >gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 3e-57
Identities = 74/180 (41%), Positives = 108/180 (60%), Gaps = 8/180 (4%)
Query: 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 62
+ + ELG EV ND EE+ NP G++ISPGPG+P G +++ + EL +P
Sbjct: 14 ARALRELGVEVEVVPNDT-PAEEILELNPDGIIISPGPGSPGALGGAIEAIKELRENKIP 72
Query: 63 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSL 122
+ G+C+G Q + AFGGK++++ HGK+S V +D+ GL GL N F RYHS
Sbjct: 73 ILGICLGHQLLALAFGGKVIKAKKEPHHGKNSPVGHDK----GLFYGLPNVFIVRRYHSY 128
Query: 123 VIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182
++ ++ P LEVTA +E+G IMA RHK+ + GVQFHPES +T G ++ NF +
Sbjct: 129 AVDPDTLPDG-LEVTAASENGGIMAIRHKENP-IFGVQFHPESSLTPGGPELLFNFFIKL 186
|
Length = 186 |
| >gnl|CDD|181194 PRK08007, PRK08007, para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 2e-55
Identities = 78/176 (44%), Positives = 115/176 (65%), Gaps = 6/176 (3%)
Query: 5 KYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 64
+Y ELG V RND LT+ ++ P+ ++ISPGP P ++GISL + +P+
Sbjct: 17 QYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPIL 76
Query: 65 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVI 124
GVC+G Q + +AFGGK+VR+ VMHGK+S + ++ + G+ GL+NP T RYHSLV+
Sbjct: 77 GVCLGHQAMAQAFGGKVVRAA-KVMHGKTSPITHNGE---GVFRGLANPLTVTRYHSLVV 132
Query: 125 EKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180
E +S P EVTAW+E IM RH+++ L+GVQFHPESI++ +G ++ NF+
Sbjct: 133 EPDSLP-ACFEVTAWSETREIMGIRHRQWD-LEGVQFHPESILSEQGHQLLANFLH 186
|
Length = 187 |
| >gnl|CDD|233027 TIGR00566, trpG_papA, glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 2e-54
Identities = 80/177 (45%), Positives = 114/177 (64%), Gaps = 7/177 (3%)
Query: 5 KYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 64
+Y ELG V RND LT++E++ P ++ISPGP P ++GISL+ + +P+
Sbjct: 17 QYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPIL 76
Query: 65 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVI 124
GVC+G Q +G+AFGG +VR+ VMHGK+S + ++ G+ GL NP TA RYHSLV+
Sbjct: 77 GVCLGHQAMGQAFGGDVVRAN-TVMHGKTSEIEHNGA---GIFRGLFNPLTATRYHSLVV 132
Query: 125 EKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180
E E+ P VTAW E+ IMA RH+ L+GVQFHPESI++ +G ++ NF+
Sbjct: 133 EPETLP-TCFPVTAWEEENIEIMAIRHRD-LPLEGVQFHPESILSEQGHQLLANFLH 187
|
This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the PFAM model GATase. Length = 188 |
| >gnl|CDD|180689 PRK06774, PRK06774, para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 1e-53
Identities = 77/180 (42%), Positives = 113/180 (62%), Gaps = 10/180 (5%)
Query: 5 KYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 64
+Y ELG V RNDEL + ++++ P ++ISPGP P ++GISL + +P+
Sbjct: 17 QYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPIL 76
Query: 65 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVI 124
GVC+G Q +G+AFG ++VR+ VMHGK+S + + + G+ GL+ P T RYHSLVI
Sbjct: 77 GVCLGHQALGQAFGARVVRAR-QVMHGKTSAICHSGQ---GVFRGLNQPLTVTRYHSLVI 132
Query: 125 EKESFPSDALEVTAWTE-DGL---IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180
+S P E+TAW+E G IM RH+ L+GVQFHPESI++ +G ++ NF+K
Sbjct: 133 AADSLP-GCFELTAWSERGGEMDEIMGIRHRTLP-LEGVQFHPESILSEQGHQLLDNFLK 190
|
Length = 191 |
| >gnl|CDD|181566 PRK08857, PRK08857, para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (413), Expect = 3e-51
Identities = 76/180 (42%), Positives = 114/180 (63%), Gaps = 11/180 (6%)
Query: 5 KYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 64
+Y ELG +V RNDE+ ++ ++ NP ++ISPGP P ++GISLQ + +P+
Sbjct: 17 QYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPIL 76
Query: 65 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVI 124
GVC+G Q I + FGG++VR+ VMHGK+S + + + + GL+NP T RYHSLV+
Sbjct: 77 GVCLGHQAIAQVFGGQVVRAR-QVMHGKTSPIRHTGR---SVFKGLNNPLTVTRYHSLVV 132
Query: 125 EKESFPSDALEVTAWTE--DGL---IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179
+ ++ P + E+TAWTE DG IM +HK ++ VQFHPESI T +G ++ NF+
Sbjct: 133 KNDTLP-ECFELTAWTELEDGSMDEIMGFQHKTLP-IEAVQFHPESIKTEQGHQLLANFL 190
|
Length = 193 |
| >gnl|CDD|237429 PRK13566, PRK13566, anthranilate synthase; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 5e-44
Identities = 77/181 (42%), Positives = 95/181 (52%), Gaps = 21/181 (11%)
Query: 6 YMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS--LQTVLELGPTVPL 63
Y + G R E L R NP V++SPGPG P D + L +P+
Sbjct: 545 YFRQTGAEVTTVRYG-FAEEMLDRVNPDLVVLSPGPGRPSDFDCKATIDAALARN--LPI 601
Query: 64 FGVCMGLQCIGEAFGGKIVRSPLGV----MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRY 119
FGVC+GLQ I EAFGG+ LG MHGK S + +G L +GL FT GRY
Sbjct: 602 FGVCLGLQAIVEAFGGE-----LGQLAYPMHGKPSRIRV--RGPGRLFSGLPEEFTVGRY 654
Query: 120 HSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGK---TIVR 176
HSL + E+ P + L VTA TEDG+IMA HK + VQFHPESI+T G I+
Sbjct: 655 HSLFADPETLPDE-LLVTAETEDGVIMAIEHKTLP-VAAVQFHPESIMTLGGDVGLRIIE 712
Query: 177 N 177
N
Sbjct: 713 N 713
|
Length = 720 |
| >gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha proteobacterial clade | Back alignment and domain information |
|---|
Score = 123 bits (309), Expect = 9e-33
Identities = 68/167 (40%), Positives = 94/167 (56%), Gaps = 6/167 (3%)
Query: 25 EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 84
+ P V++SPGPG P D ++ L +P+FGVC+GLQ + EAFGG +
Sbjct: 553 AAFDERRPDLVVLSPGPGRPADFDVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVL 612
Query: 85 PLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGL 144
P +HGK+S + G D L AGL T GRYHSL ++ P++ L VTA + DGL
Sbjct: 613 PEP-VHGKASRIRV--LGPDALFAGLPERLTVGRYHSLFARRDRLPAE-LTVTAESADGL 668
Query: 145 IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAADSQ 191
IMA H++ L VQFHPESI+T +G + I +V + AA +
Sbjct: 669 IMAIEHRRLP-LAAVQFHPESIMTLDGGAGLA-MIGNVVDRLAAGAL 713
|
This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate [Amino acid biosynthesis, Aromatic amino acid family]. Length = 717 |
| >gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-28
Identities = 59/164 (35%), Positives = 95/164 (57%), Gaps = 12/164 (7%)
Query: 11 GYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 67
G++ +YRN + +E L + +++SPGPG P ++G + + L +P+ G+C
Sbjct: 25 GHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGIC 84
Query: 68 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKE 127
+G Q I EA+GG + ++ ++HGK+S + +D + + AGL+NP RYHSLV
Sbjct: 85 LGHQAIVEAYGGYVGQAG-EILHGKASSIEHDGQ---AMFAGLTNPLPVARYHSLV---G 137
Query: 128 SFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEG 171
S L + A +G++MA RH + G QFHPESI+TT+G
Sbjct: 138 SNIPAGLTINA-HFNGMVMAVRHDA-DRVCGFQFHPESILTTQG 179
|
Length = 531 |
| >gnl|CDD|235882 PRK06895, PRK06895, putative anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 1e-24
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 11/172 (6%)
Query: 10 LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 69
LG +V ++L ++E++ N +LISPGP P+ + + GVC+G
Sbjct: 24 LGVPMQVVNVEDLDLDEVE--NFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGVCLG 81
Query: 70 LQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF 129
Q + E FGG++ V HG+ + + L GL F G YHS + +E+F
Sbjct: 82 HQTLCEFFGGELYNLN-NVRHGQQRPLK--VRSNSPLFDGLPEEFNIGLYHSWAVSEENF 138
Query: 130 PSDALEVTAWTEDGLIMAARHKKYKHLQ--GVQFHPESIITTEGKTIVRNFI 179
P+ LE+TA ++ ++MA +HK L GVQFHPES I+ G+ I+RN++
Sbjct: 139 PTP-LEITAVCDENVVMAMQHK---TLPIYGVQFHPESYISEFGEQILRNWL 186
|
Length = 190 |
| >gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 4e-24
Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 15/181 (8%)
Query: 9 ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGV 66
ELG + E+ N +EE++ KNP+G+++S GP + + + + ELG VP+ G+
Sbjct: 20 ELGVYSELVPNTT-PLEEIREKNPKGIILSGGPSSVYAENAPRADEKIFELG--VPVLGI 76
Query: 67 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYH-SLVIE 125
C G+Q + + GG++ R+ +GK+ L DE D L GL + T H V E
Sbjct: 77 CYGMQLMAKQLGGEVGRAEKR-EYGKAELEILDE---DDLFRGLPDESTVWMSHGDKVKE 132
Query: 126 KESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 185
+ +V A +++ + A H++ K + GVQFHPE T G ++ NF+ +
Sbjct: 133 ----LPEGFKVLATSDNCPVAAMAHEE-KPIYGVQFHPEVTHTEYGNELLENFVYDVCGC 187
Query: 186 E 186
E
Sbjct: 188 E 188
|
This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 188 |
| >gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 5e-23
Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 21/177 (11%)
Query: 9 ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 62
ELG + E+ N +EE+K KNP+G+++S GP AP+ + ELG VP
Sbjct: 20 ELGVYSEILPNTT-PLEEIKLKNPKGIILSGGPSSVYEEDAPRVD----PEIFELG--VP 72
Query: 63 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSL 122
+ G+C G+Q I +A GGK+ R + + L GL + T H
Sbjct: 73 VLGICYGMQLIAKALGGKVERGD----KREYGKAEIEIDDSSPLFEGLPDEQTVWMSHGD 128
Query: 123 VIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179
+ K + +V A +++ + A +++ K + GVQFHPE T +GK I++NF+
Sbjct: 129 EVVK---LPEGFKVIASSDNCPVAAIANEEKK-IYGVQFHPEVTHTEKGKEILKNFL 181
|
Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 181 |
| >gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 2e-22
Identities = 59/189 (31%), Positives = 90/189 (47%), Gaps = 29/189 (15%)
Query: 11 GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 70
GY V+RN + VEE+ NP + +SPGPG P+D+G + + +PL G+C+G
Sbjct: 25 GYKCTVFRN-TVPVEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGICLGF 83
Query: 71 QCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDG-LLAGLS------NPFTAG------ 117
Q + E GGK+ P G +HG + + + G + AGL+ +P G
Sbjct: 84 QALLEHHGGKV--EPCGPVHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIA 141
Query: 118 RYHSL---VIEKESFPSDALEVTAWTEDGL---IMAARHKKYKHLQGVQFHPESIITTEG 171
RYHSL V +E + IMAA K + G+QFHPES+++ G
Sbjct: 142 RYHSLGCVVAPDG------MESLGTCSSEIGPVIMAAETTDGKAI-GLQFHPESVLSPTG 194
Query: 172 KTIVRNFIK 180
I+ ++
Sbjct: 195 PIILSRCVE 203
|
Length = 208 |
| >gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed | Back alignment and domain information |
|---|
Score = 91.6 bits (229), Expect = 7e-22
Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 27/183 (14%)
Query: 9 ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQ-DSGISLQTVLELGPTV 61
ELG + E+ D + EE++ NP+G+++S GP GAP+ D I ELG V
Sbjct: 25 ELGVYSEIVPYDI-SAEEIRAFNPKGIILSGGPASVYEEGAPRADPEI-----FELG--V 76
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 121
P+ G+C G+Q + GGK+ R+ +G++ L + + L GL H
Sbjct: 77 PVLGICYGMQLMAHQLGGKVERAGKR-EYGRAEL---EVDNDSPLFKGLPEEQDVWMSHG 132
Query: 122 LVIEK--ESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179
+ + E F +V A TE+ I A +++ + GVQFHPE T +GK ++ NF+
Sbjct: 133 DKVTELPEGF-----KVIASTENCPIAAIANEE-RKFYGVQFHPEVTHTPQGKKLLENFV 186
Query: 180 KMI 182
I
Sbjct: 187 FDI 189
|
Length = 511 |
| >gnl|CDD|215481 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 5e-21
Identities = 72/229 (31%), Positives = 105/229 (45%), Gaps = 64/229 (27%)
Query: 16 VYRNDELTVEEL-----KRKNPRGVLISPGPGAP---QDSGISLQTVLELGPTVPLFGVC 67
V RNDE T EE+ + K ++ISPGPG+P D GI L+ +LE +P+ GVC
Sbjct: 111 VVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRLLLEC-RDIPILGVC 169
Query: 68 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD-EKGEDGLLAGLSNPFTAGRYHSLVIEK 126
+G Q +G G +IV +P V HG+ S + ++ + D + +G ++ F RYHSLVI+
Sbjct: 170 LGHQALGYVHGARIVHAPEPV-HGRLSEIEHNGCRLFDDIPSGRNSGFKVVRYHSLVIDA 228
Query: 127 ESFP-----------SDALEV---------------------------------TAWT-- 140
ES P SD L T+W
Sbjct: 229 ESLPKELVPIAWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSS 288
Query: 141 -----EDG-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183
++G ++M H H G+QFHPESI T G+ I +NF ++
Sbjct: 289 HSERMQNGKILMGIMHSTRPHY-GLQFHPESIATCYGRQIFKNFREITQ 336
|
Length = 918 |
| >gnl|CDD|233588 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal clade | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 8e-20
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 14/154 (9%)
Query: 35 VLISPGPGAP---QDSGISLQTVLEL--GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVM 89
+++ PGPG P QD GI + + EL VP+ G+C+G Q + A G I R P
Sbjct: 57 IVVGPGPGNPNNAQDMGI-ISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPT-PK 114
Query: 90 HGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI-MAA 148
HG+ VY + + GL + + RYHSL E + E+G+I M+A
Sbjct: 115 HGQ---VYEMHTNDAAIFCGLFS-VKSTRYHSLYANPEGIDTLLPLCLTEDEEGIILMSA 170
Query: 149 RHKKYKHLQGVQFHPESIITTEGK-TIVRNFIKM 181
+ KK GVQ+HPES + G +V NF+K+
Sbjct: 171 QTKKKPWF-GVQYHPESCCSELGSGKLVSNFLKL 203
|
This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate. Length = 742 |
| >gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 1e-17
Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 12/161 (7%)
Query: 21 ELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80
VEE+K G+++S GP + +G + + EL VP+ G+C+G Q I +AFGG+
Sbjct: 32 TTPVEEIK-AFEDGLILSGGPDI-ERAGNCPEYLKELD--VPILGICLGHQLIAKAFGGE 87
Query: 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT 140
+ R +G+ +LV + ED +L GL H+ E + P E+ A +
Sbjct: 88 VGRGE----YGEYALVEVEILDEDDILKGLPPEIRVWASHA--DEVKELPDG-FEILARS 140
Query: 141 EDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
+ + A +HK+ K + GVQFHPE T G+ I +NF+++
Sbjct: 141 DICEVEAMKHKE-KPIYGVQFHPEVAHTEYGEEIFKNFLEI 180
|
Length = 184 |
| >gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 2e-16
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 28/152 (18%)
Query: 23 TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKI 81
EE+ + +P G+ +S GPG P +++TV + LG +P+FG+C+G Q + A G K
Sbjct: 31 DAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQLLALALGAKT 90
Query: 82 VRSPLG-------VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDAL 134
+ G V + VY T+ + H ++ +S P L
Sbjct: 91 YKMKFGHRGSNHPVKDLITGRVYI----------------TS-QNHGYAVDPDSLPGG-L 132
Query: 135 EVTAWT-EDGLIMAARHKKYKHLQGVQFHPES 165
EVT DG + RHK VQFHPE+
Sbjct: 133 EVTHVNLNDGTVEGIRHKDLPVF-SVQFHPEA 163
|
This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is a heterodimer consisting of two polypeptide chains referred to as the small and large subunit. Ammonia an intermediate during the biosynthesis of carbomyl phosphate produced by the hydrolysis of glutamine in the small subunit of the enzyme is delivered via a molecular tunnel between the remotely located carboxyphosphate active site in the large subunit. CPSase IIs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. This group also contains the sequence from the mammalian urea cycle form which has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I. Length = 178 |
| >gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 6e-16
Identities = 60/189 (31%), Positives = 87/189 (46%), Gaps = 23/189 (12%)
Query: 9 ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-----GPTVPL 63
ELGY + EEL +P G++IS GP + D L +L P P+
Sbjct: 23 ELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPV 82
Query: 64 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPF-TAGRYHSL 122
G+C+G Q + +A GGK+ R P + G + + +G+D L AGL + F T H
Sbjct: 83 LGICLGHQLLAKALGGKVERGPKREI-GWTPV--ELTEGDDPLFAGLPDLFTTVFMSHG- 138
Query: 123 VIEKESF---PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTE-GKTIVRNF 178
++ P A V A +E A R+ K GVQFHPE +T E G+ ++ NF
Sbjct: 139 ----DTVVELPEGA-VVLASSETCPNQAFRYG--KRAYGVQFHPE--VTHEYGEALLENF 189
Query: 179 IKMIVRKEA 187
I +E
Sbjct: 190 AHEICGEEP 198
|
Length = 198 |
| >gnl|CDD|233378 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small subunit | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-14
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 26/149 (17%)
Query: 25 EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 84
EE+K+ NP G+ +S GPG P +++T+ +L +P+FG+C+G Q + AFG K +
Sbjct: 208 EEIKKYNPDGIFLSNGPGDPAAVKPAIETIRKLLEKIPIFGICLGHQLLALAFGAKTYKM 267
Query: 85 PLG-------VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 137
G V + V T+ + H ++ +S P+ LEVT
Sbjct: 268 KFGHRGGNHPVKDLITGRVE----------------ITS-QNHGYAVDPDSLPAGDLEVT 310
Query: 138 AWT-EDGLIMAARHKKYKHLQGVQFHPES 165
DG + RHK + VQ+HPE+
Sbjct: 311 HVNLNDGTVEGIRHKDLP-VFSVQYHPEA 338
|
This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 358 |
| >gnl|CDD|183784 PRK12838, PRK12838, carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 1e-14
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 12/143 (8%)
Query: 23 TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIV 82
++EE+K NP G+++S GPG P++ L + +L + P+ G+C+G Q I A G
Sbjct: 200 SLEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISSYPILGICLGHQLIALALGADTE 259
Query: 83 RSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-E 141
+ P G G + V G + + H V++++S L V +
Sbjct: 260 KLPFG-HRGANHPVIDLTTG---------RVWMTSQNHGYVVDEDSLDGTPLSVRFFNVN 309
Query: 142 DGLIMAARHKKYKHLQGVQFHPE 164
DG I RHKK + VQFHPE
Sbjct: 310 DGSIEGLRHKKKP-VLSVQFHPE 331
|
Length = 354 |
| >gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-13
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 20/132 (15%)
Query: 51 LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGL 110
++ L G P+ G+C+G Q + A GGK+ R+P G G + + D L AGL
Sbjct: 74 IRQALAAG--KPVLGICLGHQLLARALGGKVGRNPKGWEIGWFPVTLTEAGKADPLFAGL 131
Query: 111 SNPFTAGRYHSLVIEKESF---PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESII 167
+ F +H ++ P A + A +E A R + L G+QFHPE
Sbjct: 132 PDEFPVFHWH-----GDTVVELPPGA-VLLASSEACPNQAFR-YGDRAL-GLQFHPE--- 180
Query: 168 TTEGKTIVRNFI 179
+ ++RNF+
Sbjct: 181 ----ERLLRNFL 188
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 188 |
| >gnl|CDD|237139 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 3e-12
Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 32/154 (20%)
Query: 23 TVEELKRKNPRGVLISPGPGAPQ--DSGISL-QTVLELGPTVPLFGVCMGLQCIGEAFGG 79
T EE+ NP GV +S GPG P D I + + +LE +P+FG+C+G Q + A G
Sbjct: 210 TAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKK--IPIFGICLGHQLLALALGA 267
Query: 80 KIVRSPLG-------VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSD 132
K + G V ++ V T+ + H ++++S P++
Sbjct: 268 KTYKMKFGHRGANHPVKDLETGKVE----------------ITS-QNHGFAVDEDSLPAN 310
Query: 133 ALEVTAW-TEDGLIMAARHKKYKHLQGVQFHPES 165
LEVT DG + RHK VQ+HPE+
Sbjct: 311 -LEVTHVNLNDGTVEGLRHKDLPAF-SVQYHPEA 342
|
Length = 360 |
| >gnl|CDD|178370 PLN02771, PLN02771, carbamoyl-phosphate synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 1e-11
Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 25 EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 84
E LK K P GVL S GPG P +++TV EL VP+FG+CMG Q +G+A GGK +
Sbjct: 276 EALKMK-PDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGICMGHQLLGQALGGKTFKM 334
Query: 85 PLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGL 144
G HG + V + G + A + H+ ++ S P +EVT +
Sbjct: 335 KFG-HHGGNHPVRNNRTGRVEISA---------QNHNYAVDPASLPE-GVEVTHVNLNDG 383
Query: 145 IMAARHKKYKHLQGVQFHPES 165
A ++ +Q+HPE+
Sbjct: 384 SCAGLAFPALNVMSLQYHPEA 404
|
Length = 415 |
| >gnl|CDD|223579 COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-11
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 35/164 (21%)
Query: 18 RNDELTV-------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 69
R +TV EE+ NP G+ +S GPG P +++T+ EL G +P+FG+C+G
Sbjct: 200 RGCRVTVVPADTSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLG 259
Query: 70 LQCIGEAFGGKIVRSPLG-------VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSL 122
Q + A G K + G V + VY T+ + H
Sbjct: 260 HQLLALALGAKTYKMKFGHRGANHPVKDLDTGRVY----------------ITS-QNHGY 302
Query: 123 VIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPES 165
++++S L+VT DG + RHK VQ+HPE+
Sbjct: 303 AVDEDSLVET-LKVTHVNLNDGTVEGIRHKDLP-AFSVQYHPEA 344
|
Length = 368 |
| >gnl|CDD|153216 cd01745, GATase1_2, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-10
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 32/104 (30%)
Query: 61 VPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYH 120
P+ G+C G+Q + A GG + + + V H
Sbjct: 101 KPILGICRGMQLLNVALGGTLYQD-IRV----------------------------NSLH 131
Query: 121 SLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPE 164
I++ +D L V A DG+I A + GVQ+HPE
Sbjct: 132 HQAIKR---LADGLRVEARAPDGVIEAIESPDRPFVLGVQWHPE 172
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 189 |
| >gnl|CDD|224982 COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 3e-10
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 21/140 (15%)
Query: 55 LELGPTVPLFGVCMGLQCIGEAFGGKIVR---SPLGVM-HGKSSLVYYD------EKGED 104
LE G +P+ G+C GLQ + A GG + + G + H + + V+ + E G
Sbjct: 104 LERG--IPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEPG-- 159
Query: 105 GLLAGLSN--PFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFH 162
LA + F +H I+K + L V A DG + A K + GVQ+H
Sbjct: 160 SKLAKILGESEFMVNSFHHQAIKKLA---PGLVVEARAPDGTVEAVEVKNDAFVLGVQWH 216
Query: 163 PESIITTEG--KTIVRNFIK 180
PE ++ T + F+
Sbjct: 217 PEYLVDTNPLSLALFEAFVN 236
|
Length = 243 |
| >gnl|CDD|215197 PLN02347, PLN02347, GMP synthetase | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 6e-09
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 14/161 (8%)
Query: 25 EELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 78
+ + NPR V++S GP GAP E G VP+ G+C G+Q I + G
Sbjct: 47 DRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERG--VPVLGICYGMQLIVQKLG 104
Query: 79 GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTA 138
G+ V+ +G+ + L L + T + S E P + EV A
Sbjct: 105 GE-VKPGEKQEYGRMEI---RVVCGSQLFGDLPSGETQTVWMSHGDEAVKLP-EGFEVVA 159
Query: 139 WTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179
+ G ++A +++ + + G+Q+HPE + +G +R+F+
Sbjct: 160 KSVQGAVVAIENRE-RRIYGLQYHPEVTHSPKGMETLRHFL 199
|
Length = 536 |
| >gnl|CDD|214392 CHL00197, carA, carbamoyl-phosphate synthase arginine-specific small subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 7e-09
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 29/144 (20%)
Query: 31 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVM 89
P G+L+S GPG P ++TV + L +P+FG+CMG Q + A K + G
Sbjct: 233 QPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAKTFKLKFG-- 290
Query: 90 HGKSSLVYYDEKGEDGLLAGLSNPFTAGRY-------HSLVIEKESFPSDALEVTAWT-E 141
H GL++P + H + ES + +T +
Sbjct: 291 H-----------------RGLNHPSGLNQQVEITSQNHGFAVNLESLAKNKFYITHFNLN 333
Query: 142 DGLIMAARHKKYKHLQGVQFHPES 165
DG + H K VQ+HPE+
Sbjct: 334 DGTVAGISHSP-KPYFSVQYHPEA 356
|
Length = 382 |
| >gnl|CDD|181635 PRK09065, PRK09065, glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 61 VPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYH 120
+PL G+C G Q + A GG++ +P G G ++ + +D L AGL F A H
Sbjct: 89 MPLLGICYGHQLLAHALGGEVGYNPAGRESGTVTVELHPAAADDPLFAGLPAQFPAHLTH 148
Query: 121 -SLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPE 164
V+ P A+ + +D A R+ H GVQFHPE
Sbjct: 149 LQSVLR---LPPGAVVLARSAQDP-HQAFRYG--PHAWGVQFHPE 187
|
Length = 237 |
| >gnl|CDD|219535 pfam07722, Peptidase_C26, Peptidase C26 | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-07
Identities = 29/116 (25%), Positives = 41/116 (35%), Gaps = 15/116 (12%)
Query: 61 VPLFGVCMGLQCIGEAFGGKI---VRSPLGVMHGKSSLVYYDEKG------EDGLLAGL- 110
P+ G+C G+Q + A GG + + G L LLA L
Sbjct: 107 KPILGICRGMQLLNVALGGTLYQDIPEHPGNSDHHHQLAVQYAPSHAVSLEPGSLLARLL 166
Query: 111 -SNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQ-GVQFHPE 164
+ H I++ + L V A DG I A + GVQ+HPE
Sbjct: 167 GAEEILVNSLHHQAIKR---LAPGLRVEATAPDGTIEAIESPNAPYFVLGVQWHPE 219
|
These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C terminus. Length = 219 |
| >gnl|CDD|233601 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 7e-06
Identities = 38/175 (21%), Positives = 62/175 (35%), Gaps = 45/175 (25%)
Query: 35 VLISPGPGAPQD-------SGISLQTVLELGPTVPLFGVCMGLQCI---GEAFGGKIVRS 84
LI PG GA +G+ L L + P+ G+C+G+Q + E GG
Sbjct: 39 KLILPGVGAFGAAMARLRENGLDLFVELVVRLGKPVLGICLGMQLLFERSEEGGGV---P 95
Query: 85 PLGVMHGKSSLV-----------YYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDA 133
LG++ G + E LL G+ HS
Sbjct: 96 GLGLIKGNVVKLEARKVPHMGWNEVHPVKESPLLNGIDEGAYFYFVHSYYAV-------- 147
Query: 134 LEVTAWTEDGLIMAARHK-------KYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
E+ ++ A + + ++ G QFHPE T G ++ NF+++
Sbjct: 148 -----CEEEAVLAYADYGEKFPAAVQKGNIFGTQFHPEKSGKT-GLKLLENFLEL 196
|
This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6 [Amino acid biosynthesis, Histidine family]. Length = 196 |
| >gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 5e-05
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 3 FLKYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQDSGIS------LQTVL 55
L + E G +V D VE ++ + G+++ GPG P D L+
Sbjct: 17 PLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAA 76
Query: 56 ELGPTVPLFGVCMGLQCI 73
G P+ G+C+G Q +
Sbjct: 77 AAG--KPVLGICLGAQLL 92
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92 |
| >gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 1e-04
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 2 TFLKYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQDSGIS------LQTV 54
+ L + E G +V D VE ++ + G+++ GPG P D L+
Sbjct: 16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREA 75
Query: 55 LELGPTVPLFGVCMGLQCI 73
G P+ G+C+G Q +
Sbjct: 76 AAAG--KPILGICLGAQLL 92
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115 |
| >gnl|CDD|223196 COG0118, HisH, Glutamine amidotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 5e-04
Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 33/143 (23%)
Query: 60 TVPLFGVCMGLQCIGEA------------FGGKIVR---SPLGVMH-GKSSLVYYDEKGE 103
P G+C+G+Q + E GK+VR L V H G + + +
Sbjct: 74 GKPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQV---EFVRG 130
Query: 104 DGLLAGLSNPFTAGRY----HSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGV 159
L G+ + G Y HS + P + V A T+ G A K ++ G
Sbjct: 131 HPLFKGIPD----GAYFYFVHSYYVP----PGNPETVVATTDYGEPFPAAVAK-DNVFGT 181
Query: 160 QFHPESIITTEGKTIVRNFIKMI 182
QFHPE G +++NF++ I
Sbjct: 182 QFHPEKSGKA-GLKLLKNFLEWI 203
|
Length = 204 |
| >gnl|CDD|237288 PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.002
Identities = 46/147 (31%), Positives = 64/147 (43%), Gaps = 44/147 (29%)
Query: 62 PLFGVCMGLQCI---GEAFG---------GKIVR----SPLGVMH-GKSSLVYYDEKGED 104
PL G+C+G+Q + E FG G++ R L V H G + L K E
Sbjct: 74 PLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLEL---KKES 130
Query: 105 GLLAGLSNPFTAGRY----HSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGV 159
LL G+ + G Y HS + P D V A T+ G AA K ++ G
Sbjct: 131 PLLKGIPD----GAYVYFVHSYYAD----PCDEEYVAATTDYGVEFPAAVGKD--NVFGA 180
Query: 160 QFHPE-SIITTEGKT---IVRNFIKMI 182
QFHPE S G I++NF++M+
Sbjct: 181 QFHPEKS-----GDVGLKILKNFVEMV 202
|
Length = 205 |
| >gnl|CDD|181323 PRK08250, PRK08250, glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.004
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 65 GVCMGLQCIGEAFGGKIVRSP 85
GVC+G Q IGEA G K SP
Sbjct: 89 GVCLGAQLIGEALGAKYEHSP 109
|
Length = 235 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 192 | |||
| PLN02335 | 222 | anthranilate synthase | 100.0 | |
| COG0512 | 191 | PabA Anthranilate/para-aminobenzoate synthases com | 100.0 | |
| PRK07649 | 195 | para-aminobenzoate/anthranilate synthase glutamine | 100.0 | |
| PRK08007 | 187 | para-aminobenzoate synthase component II; Provisio | 100.0 | |
| TIGR00566 | 188 | trpG_papA glutamine amidotransferase of anthranila | 100.0 | |
| PRK05670 | 189 | anthranilate synthase component II; Provisional | 100.0 | |
| CHL00101 | 190 | trpG anthranilate synthase component 2 | 100.0 | |
| PRK06774 | 191 | para-aminobenzoate synthase component II; Provisio | 100.0 | |
| PRK06895 | 190 | putative anthranilate synthase component II; Provi | 100.0 | |
| PRK08857 | 193 | para-aminobenzoate synthase component II; Provisio | 100.0 | |
| cd01743 | 184 | GATase1_Anthranilate_Synthase Type 1 glutamine ami | 100.0 | |
| PRK05637 | 208 | anthranilate synthase component II; Provisional | 100.0 | |
| TIGR00888 | 188 | guaA_Nterm GMP synthase (glutamine-hydrolyzing), N | 100.0 | |
| PRK07765 | 214 | para-aminobenzoate synthase component II; Provisio | 100.0 | |
| KOG0026 | 223 | consensus Anthranilate synthase, beta chain [Amino | 100.0 | |
| cd01742 | 181 | GATase1_GMP_Synthase Type 1 glutamine amidotransfe | 100.0 | |
| PRK00758 | 184 | GMP synthase subunit A; Validated | 100.0 | |
| COG0505 | 368 | CarA Carbamoylphosphate synthase small subunit [Am | 100.0 | |
| COG0518 | 198 | GuaA GMP synthase - Glutamine amidotransferase dom | 100.0 | |
| PLN02347 | 536 | GMP synthetase | 100.0 | |
| PF00117 | 192 | GATase: Glutamine amidotransferase class-I; InterP | 100.0 | |
| PRK14607 | 534 | bifunctional glutamine amidotransferase/anthranila | 100.0 | |
| TIGR01368 | 358 | CPSaseIIsmall carbamoyl-phosphate synthase, small | 100.0 | |
| PRK09522 | 531 | bifunctional glutamine amidotransferase/anthranila | 100.0 | |
| PRK12838 | 354 | carbamoyl phosphate synthase small subunit; Review | 100.0 | |
| cd01744 | 178 | GATase1_CPSase Small chain of the glutamine-depend | 100.0 | |
| PRK00074 | 511 | guaA GMP synthase; Reviewed | 100.0 | |
| PRK12564 | 360 | carbamoyl phosphate synthase small subunit; Review | 100.0 | |
| CHL00197 | 382 | carA carbamoyl-phosphate synthase arginine-specifi | 100.0 | |
| TIGR01815 | 717 | TrpE-clade3 anthranilate synthase, alpha proteobac | 100.0 | |
| PRK13566 | 720 | anthranilate synthase; Provisional | 100.0 | |
| PLN02771 | 415 | carbamoyl-phosphate synthase (glutamine-hydrolyzin | 100.0 | |
| PRK09065 | 237 | glutamine amidotransferase; Provisional | 100.0 | |
| PRK11366 | 254 | puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; | 100.0 | |
| PLN02889 | 918 | oxo-acid-lyase/anthranilate synthase | 100.0 | |
| PRK07567 | 242 | glutamine amidotransferase; Provisional | 99.98 | |
| PRK06490 | 239 | glutamine amidotransferase; Provisional | 99.97 | |
| cd01741 | 188 | GATase1_1 Subgroup of proteins having the Type 1 g | 99.97 | |
| PRK07053 | 234 | glutamine amidotransferase; Provisional | 99.97 | |
| PRK05665 | 240 | amidotransferase; Provisional | 99.97 | |
| PRK08250 | 235 | glutamine amidotransferase; Provisional | 99.97 | |
| cd01745 | 189 | GATase1_2 Subgroup of proteins having the Type 1 g | 99.97 | |
| COG2071 | 243 | Predicted glutamine amidotransferases [General fun | 99.97 | |
| COG0118 | 204 | HisH Glutamine amidotransferase [Amino acid transp | 99.97 | |
| TIGR01823 | 742 | PabB-fungal aminodeoxychorismate synthase, fungal | 99.96 | |
| cd01748 | 198 | GATase1_IGP_Synthase Type 1 glutamine amidotransfe | 99.96 | |
| PRK13170 | 196 | hisH imidazole glycerol phosphate synthase subunit | 99.96 | |
| PRK13146 | 209 | hisH imidazole glycerol phosphate synthase subunit | 99.96 | |
| CHL00188 | 210 | hisH imidazole glycerol phosphate synthase subunit | 99.96 | |
| PRK13141 | 205 | hisH imidazole glycerol phosphate synthase subunit | 99.96 | |
| PRK14004 | 210 | hisH imidazole glycerol phosphate synthase subunit | 99.96 | |
| PRK13525 | 189 | glutamine amidotransferase subunit PdxT; Provision | 99.96 | |
| PRK13152 | 201 | hisH imidazole glycerol phosphate synthase subunit | 99.95 | |
| PRK13181 | 199 | hisH imidazole glycerol phosphate synthase subunit | 99.95 | |
| cd01746 | 235 | GATase1_CTP_Synthase Type 1 glutamine amidotransfe | 99.95 | |
| PRK13527 | 200 | glutamine amidotransferase subunit PdxT; Provision | 99.95 | |
| PF07722 | 217 | Peptidase_C26: Peptidase C26; InterPro: IPR011697 | 99.95 | |
| cd01747 | 273 | GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot | 99.95 | |
| TIGR01855 | 196 | IMP_synth_hisH imidazole glycerol phosphate syntha | 99.95 | |
| PRK06186 | 229 | hypothetical protein; Validated | 99.95 | |
| PRK13143 | 200 | hisH imidazole glycerol phosphate synthase subunit | 99.95 | |
| KOG1622 | 552 | consensus GMP synthase [Nucleotide transport and m | 99.94 | |
| PRK05380 | 533 | pyrG CTP synthetase; Validated | 99.94 | |
| TIGR00337 | 525 | PyrG CTP synthase. CTP synthase is involved in pyr | 99.94 | |
| PRK13142 | 192 | hisH imidazole glycerol phosphate synthase subunit | 99.93 | |
| KOG3179 | 245 | consensus Predicted glutamine synthetase [Nucleoti | 99.93 | |
| KOG0370 | 1435 | consensus Multifunctional pyrimidine synthesis pro | 99.92 | |
| cd01749 | 183 | GATase1_PB Glutamine Amidotransferase (GATase_I) i | 99.92 | |
| TIGR03800 | 184 | PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl | 99.92 | |
| PLN02327 | 557 | CTP synthase | 99.91 | |
| COG0504 | 533 | PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide | 99.91 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 99.91 | |
| TIGR01737 | 227 | FGAM_synth_I phosphoribosylformylglycinamidine syn | 99.9 | |
| KOG1224 | 767 | consensus Para-aminobenzoate (PABA) synthase ABZ1 | 99.89 | |
| PRK05368 | 302 | homoserine O-succinyltransferase; Provisional | 99.87 | |
| PRK03619 | 219 | phosphoribosylformylglycinamidine synthase I; Prov | 99.86 | |
| PLN02832 | 248 | glutamine amidotransferase subunit of pyridoxal 5' | 99.83 | |
| COG0047 | 231 | PurL Phosphoribosylformylglycinamidine (FGAM) synt | 99.8 | |
| PRK13526 | 179 | glutamine amidotransferase subunit PdxT; Provision | 99.8 | |
| PRK01175 | 261 | phosphoribosylformylglycinamidine synthase I; Prov | 99.79 | |
| cd01740 | 238 | GATase1_FGAR_AT Type 1 glutamine amidotransferase | 99.78 | |
| KOG1559 | 340 | consensus Gamma-glutamyl hydrolase [Coenzyme trans | 99.77 | |
| KOG2387 | 585 | consensus CTP synthase (UTP-ammonia lyase) [Nucleo | 99.75 | |
| COG0311 | 194 | PDX2 Predicted glutamine amidotransferase involved | 99.7 | |
| PF01174 | 188 | SNO: SNO glutamine amidotransferase family; InterP | 99.68 | |
| PF13507 | 259 | GATase_5: CobB/CobQ-like glutamine amidotransferas | 99.66 | |
| KOG0623 | 541 | consensus Glutamine amidotransferase/cyclase [Amin | 99.65 | |
| TIGR01857 | 1239 | FGAM-synthase phosphoribosylformylglycinamidine sy | 99.51 | |
| TIGR01735 | 1310 | FGAM_synt phosphoribosylformylglycinamidine syntha | 99.38 | |
| PLN03206 | 1307 | phosphoribosylformylglycinamidine synthase; Provis | 99.38 | |
| PRK05297 | 1290 | phosphoribosylformylglycinamidine synthase; Provis | 99.35 | |
| PF04204 | 298 | HTS: Homoserine O-succinyltransferase ; InterPro: | 99.2 | |
| cd03131 | 175 | GATase1_HTS Type 1 glutamine amidotransferase (GAT | 99.15 | |
| TIGR01001 | 300 | metA homoserine O-succinyltransferase. The apparen | 99.12 | |
| KOG3210 | 226 | consensus Imidazoleglycerol-phosphate synthase sub | 99.11 | |
| PHA03366 | 1304 | FGAM-synthase; Provisional | 99.09 | |
| PRK06278 | 476 | cobyrinic acid a,c-diamide synthase; Validated | 99.05 | |
| cd03130 | 198 | GATase1_CobB Type 1 glutamine amidotransferase (GA | 99.05 | |
| TIGR01739 | 1202 | tegu_FGAM_synt herpesvirus tegument protein/v-FGAM | 99.04 | |
| cd01750 | 194 | GATase1_CobQ Type 1 glutamine amidotransferase (GA | 98.97 | |
| TIGR00379 | 449 | cobB cobyrinic acid a,c-diamide synthase. This mod | 98.61 | |
| PRK01077 | 451 | cobyrinic acid a,c-diamide synthase; Validated | 98.6 | |
| PRK00784 | 488 | cobyric acid synthase; Provisional | 98.39 | |
| KOG1907 | 1320 | consensus Phosphoribosylformylglycinamidine syntha | 98.36 | |
| cd01653 | 115 | GATase1 Type 1 glutamine amidotransferase (GATase1 | 98.36 | |
| PRK13896 | 433 | cobyrinic acid a,c-diamide synthase; Provisional | 98.35 | |
| COG1897 | 307 | MetA Homoserine trans-succinylase [Amino acid tran | 98.33 | |
| PF07685 | 158 | GATase_3: CobB/CobQ-like glutamine amidotransferas | 98.31 | |
| cd03128 | 92 | GAT_1 Type 1 glutamine amidotransferase (GATase1)- | 98.21 | |
| PRK11780 | 217 | isoprenoid biosynthesis protein with amidotransfer | 98.21 | |
| cd03133 | 213 | GATase1_ES1 Type 1 glutamine amidotransferase (GAT | 98.12 | |
| cd03169 | 180 | GATase1_PfpI_1 Type 1 glutamine amidotransferase ( | 97.97 | |
| cd03147 | 231 | GATase1_Ydr533c_like Type 1 glutamine amidotransfe | 97.93 | |
| COG3442 | 250 | Predicted glutamine amidotransferase [General func | 97.93 | |
| TIGR00313 | 475 | cobQ cobyric acid synthase CobQ. | 97.89 | |
| TIGR01382 | 166 | PfpI intracellular protease, PfpI family. The memb | 97.87 | |
| cd03146 | 212 | GAT1_Peptidase_E Type 1 glutamine amidotransferase | 97.81 | |
| cd03134 | 165 | GATase1_PfpI_like A type 1 glutamine amidotransfer | 97.8 | |
| COG1492 | 486 | CobQ Cobyric acid synthase [Coenzyme metabolism] | 97.72 | |
| cd03144 | 114 | GATase1_ScBLP_like Type 1 glutamine amidotransfera | 97.64 | |
| PRK04155 | 287 | chaperone protein HchA; Provisional | 97.59 | |
| cd03132 | 142 | GATase1_catalase Type 1 glutamine amidotransferase | 97.58 | |
| cd03141 | 221 | GATase1_Hsp31_like Type 1 glutamine amidotransfera | 97.47 | |
| cd03148 | 232 | GATase1_EcHsp31_like Type 1 glutamine amidotransfe | 97.46 | |
| cd03140 | 170 | GATase1_PfpI_3 Type 1 glutamine amidotransferase ( | 97.43 | |
| cd03135 | 163 | GATase1_DJ-1 Type 1 glutamine amidotransferase (GA | 97.39 | |
| COG0693 | 188 | ThiJ Putative intracellular protease/amidase [Gene | 97.37 | |
| cd03137 | 187 | GATase1_AraC_1 AraC transcriptional regulators hav | 97.35 | |
| PRK05282 | 233 | (alpha)-aspartyl dipeptidase; Validated | 97.25 | |
| PF09825 | 367 | BPL_N: Biotin-protein ligase, N terminal; InterPro | 97.25 | |
| PF01965 | 147 | DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T | 97.18 | |
| PRK11574 | 196 | oxidative-stress-resistance chaperone; Provisional | 97.13 | |
| cd03139 | 183 | GATase1_PfpI_2 Type 1 glutamine amidotransferase ( | 96.8 | |
| KOG2764 | 247 | consensus Putative transcriptional regulator DJ-1 | 96.74 | |
| TIGR01383 | 179 | not_thiJ DJ-1 family protein. This model represent | 96.59 | |
| COG1797 | 451 | CobB Cobyrinic acid a,c-diamide synthase [Coenzyme | 96.59 | |
| cd03138 | 195 | GATase1_AraC_2 AraC transcriptional regulators hav | 96.36 | |
| PF06283 | 217 | ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A. | 96.33 | |
| PF13278 | 166 | DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M | 96.2 | |
| PRK11249 | 752 | katE hydroperoxidase II; Provisional | 95.97 | |
| cd03129 | 210 | GAT1_Peptidase_E_like Type 1 glutamine amidotransf | 95.91 | |
| PLN02929 | 301 | NADH kinase | 95.74 | |
| cd03136 | 185 | GATase1_AraC_ArgR_like AraC transcriptional regula | 95.65 | |
| PRK09393 | 322 | ftrA transcriptional activator FtrA; Provisional | 95.23 | |
| PRK03372 | 306 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 93.8 | |
| PRK04539 | 296 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 93.7 | |
| PRK03378 | 292 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 93.56 | |
| PRK01911 | 292 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 93.33 | |
| PRK03708 | 277 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 93.08 | |
| PRK02231 | 272 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 92.92 | |
| PRK02155 | 291 | ppnK NAD(+)/NADH kinase family protein; Provisiona | 92.75 | |
| PRK14077 | 287 | pnk inorganic polyphosphate/ATP-NAD kinase; Provis | 92.47 | |
| PRK02649 | 305 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 91.92 | |
| PF03575 | 154 | Peptidase_S51: Peptidase family S51; InterPro: IPR | 91.49 | |
| smart00852 | 135 | MoCF_biosynth Probable molybdopterin binding domai | 90.95 | |
| COG4090 | 154 | Uncharacterized protein conserved in archaea [Func | 90.84 | |
| PRK04885 | 265 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 90.7 | |
| COG3340 | 224 | PepE Peptidase E [Amino acid transport and metabol | 90.5 | |
| PRK14075 | 256 | pnk inorganic polyphosphate/ATP-NAD kinase; Provis | 90.32 | |
| TIGR02069 | 250 | cyanophycinase cyanophycinase. This model describe | 90.32 | |
| PRK01231 | 295 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 90.02 | |
| COG4977 | 328 | Transcriptional regulator containing an amidase do | 88.48 | |
| KOG4180 | 395 | consensus Predicted kinase [General function predi | 87.85 | |
| cd00885 | 170 | cinA Competence-damaged protein. CinA is the first | 87.81 | |
| PRK11104 | 177 | hemG protoporphyrinogen oxidase; Provisional | 87.63 | |
| COG4285 | 253 | Uncharacterized conserved protein [Function unknow | 87.45 | |
| PRK14076 | 569 | pnk inorganic polyphosphate/ATP-NAD kinase; Provis | 86.96 | |
| PRK03501 | 264 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 86.85 | |
| PRK02645 | 305 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 86.8 | |
| cd00886 | 152 | MogA_MoaB MogA_MoaB family. Members of this family | 86.12 | |
| cd00758 | 133 | MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) bindin | 85.14 | |
| PLN02727 | 986 | NAD kinase | 84.72 | |
| cd03145 | 217 | GAT1_cyanophycinase Type 1 glutamine amidotransfer | 84.66 | |
| PF01513 | 285 | NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Me | 84.36 | |
| PF09897 | 147 | DUF2124: Uncharacterized protein conserved in arch | 84.04 | |
| TIGR00177 | 144 | molyb_syn molybdenum cofactor synthesis domain. Th | 84.01 | |
| TIGR02667 | 163 | moaB_proteo molybdenum cofactor biosynthesis prote | 83.42 | |
| PRK05568 | 142 | flavodoxin; Provisional | 83.4 | |
| PRK01185 | 271 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 82.72 | |
| PF03698 | 80 | UPF0180: Uncharacterised protein family (UPF0180); | 82.48 | |
| COG1058 | 255 | CinA Predicted nucleotide-utilizing enzyme related | 82.12 | |
| COG3155 | 217 | ElbB Uncharacterized protein involved in an early | 81.91 | |
| PRK03094 | 80 | hypothetical protein; Provisional | 81.16 | |
| PRK04761 | 246 | ppnK inorganic polyphosphate/ATP-NAD kinase; Revie | 81.01 | |
| PRK00561 | 259 | ppnK inorganic polyphosphate/ATP-NAD kinase; Provi | 80.9 | |
| PLN02935 | 508 | Bifunctional NADH kinase/NAD(+) kinase | 80.84 |
| >PLN02335 anthranilate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=272.31 Aligned_cols=189 Identities=86% Similarity=1.378 Sum_probs=165.3
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
+||+++|+++|+++++++++..+.+++...++|+|||+|||+++.+.+...+.+++.+.++||||||+|||+|+.++||+
T Consensus 32 ~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGIClG~QlLa~alGg~ 111 (222)
T PLN02335 32 YNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGK 111 (222)
T ss_pred HHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEecHHHHHHHHHhCCE
Confidence 37899999999999999987667777766689999999999999988776677777788899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+...+..+|.+.++......++++|++++..+.++++|++.|+.++++...++++|+++++.+++++++++|++||+|
T Consensus 112 v~~~~~~~~~G~~~~v~~~~~~~~~Lf~~l~~~~~v~~~H~~~v~~~~lp~~~~~v~a~~~~~~v~ai~~~~~~~i~GvQ 191 (222)
T PLN02335 112 IVRSPFGVMHGKSSPVHYDEKGEEGLFSGLPNPFTAGRYHSLVIEKDTFPSDELEVTAWTEDGLIMAARHRKYKHIQGVQ 191 (222)
T ss_pred EEeCCCccccCceeeeEECCCCCChhhhCCCCCCEEEechhheEecccCCCCceEEEEEcCCCCEEEEEecCCCCEEEEE
Confidence 99987655688888887765556789999999999999999999876676555999999999999999999887799999
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHHhhhh
Q 029484 161 FHPESIITTEGKTIVRNFIKMIVRKEAAD 189 (192)
Q Consensus 161 fHPE~~~~~~~~~l~~~f~~~~~~~~~~~ 189 (192)
||||+..+++|..||++|++.+.+.++++
T Consensus 192 fHPE~~~~~~g~~i~~nF~~~~~~~~~~~ 220 (222)
T PLN02335 192 FHPESIITTEGKTIVRNFIKIIEKKESEK 220 (222)
T ss_pred eCCCCCCChhHHHHHHHHHHHHHhhcccc
Confidence 99999988899999999999887665543
|
|
| >COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=253.85 Aligned_cols=175 Identities=51% Similarity=0.933 Sum_probs=157.9
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
+||++++++.|.++.|+++++.+.++++..++|+|||++|||+|.+.+...+.++++..++||||||+|||.|++++||+
T Consensus 15 yNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~~PiLGVCLGHQai~~~fGg~ 94 (191)
T COG0512 15 YNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGISLELIRRFAGRIPILGVCLGHQAIAEAFGGK 94 (191)
T ss_pred HHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECccHHHHHHHhCCE
Confidence 48999999999999999988777777887889999999999999999988899998888899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCC-CceEEEeeCCCCceEEE
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED-GLIMAARHKKYKHLQGV 159 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~-~~i~ai~~~~~~~~~g~ 159 (192)
|.+.. ...||....+... ...+|+++|+++.+..+|+-.+.++.+| +.++++|+++| +.|+|++++++| ++|+
T Consensus 95 V~~a~-~~~HGK~s~i~h~---g~~iF~glp~~f~v~RYHSLvv~~~~lP-~~l~vtA~~~d~~~IMai~h~~~p-i~gv 168 (191)
T COG0512 95 VVRAK-EPMHGKTSIITHD---GSGLFAGLPNPFTVTRYHSLVVDPETLP-EELEVTAESEDGGVIMAVRHKKLP-IYGV 168 (191)
T ss_pred EEecC-CCcCCeeeeeecC---CcccccCCCCCCEEEeeEEEEecCCCCC-CceEEEEEeCCCCEEEEEeeCCCC-EEEE
Confidence 99998 4668887744443 4679999999999999999999877766 78999999866 599999999998 9999
Q ss_pred eccCCCCCCCchHHHHHHHHHH
Q 029484 160 QFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
|||||...++.|.+|++||++.
T Consensus 169 QFHPESilT~~G~~il~Nfl~~ 190 (191)
T COG0512 169 QFHPESILTEYGHRILENFLRL 190 (191)
T ss_pred ecCCccccccchHHHHHHHHhh
Confidence 9999999999999999999975
|
|
| >PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=256.97 Aligned_cols=178 Identities=46% Similarity=0.893 Sum_probs=154.8
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
.||+++|++.|.++.++++++.+.+++...++|+|||+|||+++.+.+.....++.+.+++|+||||+|||+|+.++||+
T Consensus 13 ~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGIClG~Qlla~~lGg~ 92 (195)
T PRK07649 13 FNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVCLGHQSIAQVFGGE 92 (195)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEEcHHHHHHHHHcCCE
Confidence 37999999999999999987677777776789999999999999988777777777778999999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+.+. ..+|.+..+... .+++|++++..+.+++||++.+..+++ +++++++|.++++.++|+++++++ +||+|
T Consensus 93 V~~~~~-~~~G~~~~i~~~---~~~lf~~~~~~~~v~~~H~~~v~~~~l-p~~~~~~a~s~~~~v~a~~~~~~~-i~gvQ 166 (195)
T PRK07649 93 VVRAER-LMHGKTSLMHHD---GKTIFSDIPNPFTATRYHSLIVKKETL-PDCLEVTSWTEEGEIMAIRHKTLP-IEGVQ 166 (195)
T ss_pred EeeCCC-cccCCeEEEEEC---CChhhcCCCCCCEEEEechheEecccC-CCCeEEEEEcCCCcEEEEEECCCC-EEEEE
Confidence 999874 457777655432 467999999999999999999854344 478999999999999999999887 99999
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHH
Q 029484 161 FHPESIITTEGKTIVRNFIKMIVR 184 (192)
Q Consensus 161 fHPE~~~~~~~~~l~~~f~~~~~~ 184 (192)
||||...++.|..|+++|++.+..
T Consensus 167 FHPE~~~t~~g~~il~nfl~~~~~ 190 (195)
T PRK07649 167 FHPESIMTSHGKELLQNFIRKYSP 190 (195)
T ss_pred ECCCCCCCccHHHHHHHHHHHhHh
Confidence 999998888999999999997764
|
|
| >PRK08007 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=256.33 Aligned_cols=174 Identities=44% Similarity=0.856 Sum_probs=151.8
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
.||+++|++.|+++.++++++.+.+++...++|+|||+|||+++.+.+...+.++.+.+++|+||||+|+|+|+.++||+
T Consensus 13 ~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGIClG~Q~la~a~Gg~ 92 (187)
T PRK08007 13 WNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGK 92 (187)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEECHHHHHHHHHcCCE
Confidence 37999999999999999987677888877789999999999999888766666666778999999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+... ..+|.+.++... .+.+|++++..+.++++|++.|...++ +++++++|+++++.++|+++.+.| ++|+|
T Consensus 93 v~~~~~-~~~g~~~~v~~~---~~~l~~~~~~~~~v~~~H~~~v~~~~l-p~~~~v~a~~~~~~i~a~~~~~~~-i~GvQ 166 (187)
T PRK08007 93 VVRAAK-VMHGKTSPITHN---GEGVFRGLANPLTVTRYHSLVVEPDSL-PACFEVTAWSETREIMGIRHRQWD-LEGVQ 166 (187)
T ss_pred EEeCCC-cccCCceEEEEC---CCCcccCCCCCcEEEEcchhEEccCCC-CCCeEEEEEeCCCcEEEEEeCCCC-EEEEE
Confidence 999874 357777666544 456899998889999999999964444 478999999999999999999877 99999
Q ss_pred ccCCCCCCCchHHHHHHHHH
Q 029484 161 FHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 161 fHPE~~~~~~~~~l~~~f~~ 180 (192)
||||+..++.|.+||+||++
T Consensus 167 fHPE~~~t~~G~~il~nFl~ 186 (187)
T PRK08007 167 FHPESILSEQGHQLLANFLH 186 (187)
T ss_pred eCCcccCCcchHHHHHHHhh
Confidence 99999888899999999986
|
|
| >TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=249.90 Aligned_cols=174 Identities=45% Similarity=0.842 Sum_probs=149.1
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
+||+++++++|+++.+++++..+.+++...++|||||+|||+++.+.....+.++++.+++||||||+|||+|+.++||+
T Consensus 13 ~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGIC~G~Qll~~~~GG~ 92 (188)
T TIGR00566 13 YNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGVCLGHQAMGQAFGGD 92 (188)
T ss_pred HHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEECHHHHHHHHHcCCE
Confidence 47899999999999999987677888877789999999999999876655566666677899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCC-ceEEEeeCCCCceEEE
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGV 159 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~-~i~ai~~~~~~~~~g~ 159 (192)
+.+.. ...+|.+..+... .++++.++++++.++++|++.+..+.+ +++++++|+++++ .++|++++++| +||+
T Consensus 93 v~~~~-~~~~g~~~~v~~~---~~~~~~~l~~~~~v~~~H~~~v~~~~l-~~~~~v~a~s~~~~~v~a~~~~~~~-i~gv 166 (188)
T TIGR00566 93 VVRAN-TVMHGKTSEIEHN---GAGIFRGLFNPLTATRYHSLVVEPETL-PTCFPVTAWEEENIEIMAIRHRDLP-LEGV 166 (188)
T ss_pred EeeCC-CccccceEEEEEC---CCccccCCCCCcEEEEcccceEecccC-CCceEEEEEcCCCCEEEEEEeCCCC-EEEE
Confidence 99987 4457877777654 456788887789999999999964444 4689999999875 99999999987 9999
Q ss_pred eccCCCCCCCchHHHHHHHHH
Q 029484 160 QFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~~ 180 (192)
|||||+..++.|.+||+||+.
T Consensus 167 QfHPE~~~t~~G~~il~nfl~ 187 (188)
T TIGR00566 167 QFHPESILSEQGHQLLANFLH 187 (188)
T ss_pred EeCCCccCCcccHHHHHHHHh
Confidence 999999888999999999985
|
This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase. |
| >PRK05670 anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=249.99 Aligned_cols=176 Identities=53% Similarity=0.987 Sum_probs=149.0
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
.+++++|+++|+++++++++..+.+++...++||||++|||+++.+.....+.++++..++||||||+|||+|+.++||+
T Consensus 13 ~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGIClG~Qlla~alGg~ 92 (189)
T PRK05670 13 YNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCLGHQAIGEAFGGK 92 (189)
T ss_pred HHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCE
Confidence 37899999999999999987556666666679999999999999877666666666777899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+.+. ..+|.+.++.. ..+++|++++..+.++++|++.|....+ +++++++|+++++.++|+++++++ +||+|
T Consensus 93 v~~~~~-~~~g~~~~v~~---~~~~l~~~~~~~~~v~~~H~~~v~~~~l-p~~~~~la~s~~~~i~a~~~~~~~-~~gvQ 166 (189)
T PRK05670 93 VVRAKE-IMHGKTSPIEH---DGSGIFAGLPNPFTVTRYHSLVVDRESL-PDCLEVTAWTDDGEIMGVRHKELP-IYGVQ 166 (189)
T ss_pred EEecCC-cccCceeEEEe---CCCchhccCCCCcEEEcchhheeccccC-CCceEEEEEeCCCcEEEEEECCCC-EEEEe
Confidence 999874 34666655552 2567899988889999999999953334 478999999999999999998877 99999
Q ss_pred ccCCCCCCCchHHHHHHHHHHH
Q 029484 161 FHPESIITTEGKTIVRNFIKMI 182 (192)
Q Consensus 161 fHPE~~~~~~~~~l~~~f~~~~ 182 (192)
||||+..++++.+||++|++++
T Consensus 167 fHPE~~~~~~g~~i~~~F~~~~ 188 (189)
T PRK05670 167 FHPESILTEHGHKLLENFLELA 188 (189)
T ss_pred eCCCcCCCcchHHHHHHHHHhh
Confidence 9999987789999999999874
|
|
| >CHL00101 trpG anthranilate synthase component 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=248.89 Aligned_cols=175 Identities=54% Similarity=0.978 Sum_probs=148.4
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCee
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 81 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v 81 (192)
||+++|++.|+++.+++.+..+.+++...++||||++|||+++.+.......++.+++++|+||||+|||+|+.++||+|
T Consensus 14 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V 93 (190)
T CHL00101 14 NLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCLGHQSIGYLFGGKI 93 (190)
T ss_pred HHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEchhHHHHHHHhCCEE
Confidence 78999999999999999876677777666899999999999998765444444457789999999999999999999999
Q ss_pred eecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEec
Q 029484 82 VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQF 161 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Qf 161 (192)
.+.+. ..+|.+..+.. ..+++|.+++..+.++++|++.|+..++ +++++++|+++++.+++++++++|++||+||
T Consensus 94 ~~~~~-~~~g~~~~~~~---~~~~l~~~~~~~~~v~~~H~~~v~~~~l-p~~~~vla~s~~~~v~a~~~~~~~~i~gvQf 168 (190)
T CHL00101 94 IKAPK-PMHGKTSKIYH---NHDDLFQGLPNPFTATRYHSLIIDPLNL-PSPLEITAWTEDGLIMACRHKKYKMLRGIQF 168 (190)
T ss_pred EECCC-cccCceeeEee---CCcHhhccCCCceEEEcchhheeecccC-CCceEEEEEcCCCcEEEEEeCCCCCEEEEEe
Confidence 99874 34777766543 2567999999899999999999964334 4689999999999999999998766999999
Q ss_pred cCCCCCCCchHHHHHHHHHH
Q 029484 162 HPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 162 HPE~~~~~~~~~l~~~f~~~ 181 (192)
|||+..++.|.+|++||++.
T Consensus 169 HPE~~~~~~g~~l~~nf~~~ 188 (190)
T CHL00101 169 HPESLLTTHGQQILRNFLSL 188 (190)
T ss_pred CCccCCChhHHHHHHHHHhh
Confidence 99998778999999999874
|
|
| >PRK06774 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=245.49 Aligned_cols=174 Identities=44% Similarity=0.852 Sum_probs=146.1
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
.||+++|++.|.++.+++++..+.+++...++|+|||+|||+++.+.+.....++.+++++||||||+|||+|+.++||+
T Consensus 13 ~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC~G~Qlla~~~GG~ 92 (191)
T PRK06774 13 YNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCLGHQALGQAFGAR 92 (191)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEECHHHHHHHHHhCCE
Confidence 37999999999999999987677888887789999999999999988777677777788999999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCC----ceEEEeeCCCCce
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG----LIMAARHKKYKHL 156 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~----~i~ai~~~~~~~~ 156 (192)
+.+... .++|....... ..+++|++++..+.++++|++.+...++ ++++.++|+++++ .++++++++.| +
T Consensus 93 v~~~~~-~~~G~~~~~~~---~~~~lf~~l~~~~~v~~~Hs~~v~~~~l-p~~~~vlA~s~~d~~~~~i~~~~~~~~~-i 166 (191)
T PRK06774 93 VVRARQ-VMHGKTSAICH---SGQGVFRGLNQPLTVTRYHSLVIAADSL-PGCFELTAWSERGGEMDEIMGIRHRTLP-L 166 (191)
T ss_pred EEeCCc-ceecceEEEEe---cCchhhcCCCCCcEEEEeCcceeeccCC-CCCeEEEEEeCCCCCcceEEEEEeCCCC-E
Confidence 999874 44665443332 2567899998889999999999853334 4789999998643 47788888776 9
Q ss_pred EEEeccCCCCCCCchHHHHHHHHH
Q 029484 157 QGVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 157 ~g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
||+|||||+.++++|.+||+||++
T Consensus 167 ~GvQfHPE~~~~~~G~~i~~nf~~ 190 (191)
T PRK06774 167 EGVQFHPESILSEQGHQLLDNFLK 190 (191)
T ss_pred EEEEECCCcCCCccHHHHHHHHhh
Confidence 999999999878899999999985
|
|
| >PRK06895 putative anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=242.84 Aligned_cols=172 Identities=33% Similarity=0.613 Sum_probs=145.8
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCee
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 81 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v 81 (192)
|++++|+++|.++.++++++.+.+++. ++|+|||+|||+++.+.....+.++++++++|+||||+|||+|+.++||+|
T Consensus 16 ~i~~~l~~~g~~~~v~~~~~~~~~~l~--~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGIClG~Qlla~~~Gg~V 93 (190)
T PRK06895 16 NLVDLIRKLGVPMQVVNVEDLDLDEVE--NFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGVCLGHQTLCEFFGGEL 93 (190)
T ss_pred HHHHHHHHcCCcEEEEECCccChhHhc--cCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEEcHHHHHHHHHhCCeE
Confidence 689999999999999997654555555 799999999999875545555566667789999999999999999999999
Q ss_pred eecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEec
Q 029484 82 VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQF 161 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Qf 161 (192)
.+.+. ..+|.+..+... .++++|++++..+.++++|++.+...+++ +++.+++.++++.+++++++++| +||+||
T Consensus 94 ~~~~~-~~~g~~~~v~~~--~~~~l~~~~~~~~~v~~~Hs~~v~~~~lp-~~l~~~a~~~~~~i~a~~~~~~p-i~GvQF 168 (190)
T PRK06895 94 YNLNN-VRHGQQRPLKVR--SNSPLFDGLPEEFNIGLYHSWAVSEENFP-TPLEITAVCDENVVMAMQHKTLP-IYGVQF 168 (190)
T ss_pred eecCC-CccCceEEEEEC--CCChhhhcCCCceEEEcchhheecccccC-CCeEEEEECCCCcEEEEEECCCC-EEEEEe
Confidence 88763 457887766543 36789999999999999999999744444 68999999999999999999987 999999
Q ss_pred cCCCCCCCchHHHHHHHHH
Q 029484 162 HPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 162 HPE~~~~~~~~~l~~~f~~ 180 (192)
|||+..++.|..|++||++
T Consensus 169 HPE~~~~~~g~~il~nf~~ 187 (190)
T PRK06895 169 HPESYISEFGEQILRNWLA 187 (190)
T ss_pred CCCcCCCcchHHHHHHHHh
Confidence 9999888999999999986
|
|
| >PRK08857 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=241.22 Aligned_cols=174 Identities=43% Similarity=0.815 Sum_probs=146.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCee
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 81 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v 81 (192)
||+++|+++|+.+.+++++..+.+++...++|++|++|||+++.+.....+.++.+++++|+||||+|||+|+.++||++
T Consensus 14 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGIClG~Qlia~a~Gg~v 93 (193)
T PRK08857 14 NLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCLGHQAIAQVFGGQV 93 (193)
T ss_pred HHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCCEEEEcHHHHHHHHHhCCEE
Confidence 78999999999999999875666666666899999999999998877776777777889999999999999999999999
Q ss_pred eecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcC--C---CceEEEeeCCCCce
Q 029484 82 VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE--D---GLIMAARHKKYKHL 156 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~--~---~~i~ai~~~~~~~~ 156 (192)
.+.+. ..+|....+... .+++|.+++..+.+++||++.+...++ +++++++|+++ + +.+++++++++| +
T Consensus 94 ~~~~~-~~~G~~~~~~~~---~~~l~~~~~~~~~v~~~H~~~v~~~~l-p~~~~v~a~s~~~~~~~~~i~~~~~~~~p-i 167 (193)
T PRK08857 94 VRARQ-VMHGKTSPIRHT---GRSVFKGLNNPLTVTRYHSLVVKNDTL-PECFELTAWTELEDGSMDEIMGFQHKTLP-I 167 (193)
T ss_pred EeCCC-ceeCceEEEEEC---CCcccccCCCccEEEEccEEEEEcCCC-CCCeEEEEEecCcCCCcceEEEEEeCCCC-E
Confidence 99874 346664444433 467999998889999999999864444 47899999886 4 358999999987 9
Q ss_pred EEEeccCCCCCCCchHHHHHHHHHH
Q 029484 157 QGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 157 ~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
||+|||||+..+++|.+||+||++.
T Consensus 168 ~gvQfHPE~~~t~~g~~i~~nFl~~ 192 (193)
T PRK08857 168 EAVQFHPESIKTEQGHQLLANFLAR 192 (193)
T ss_pred EEEeeCCCcCCCcchHHHHHHHHhh
Confidence 9999999999888999999999863
|
|
| >cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=237.50 Aligned_cols=170 Identities=54% Similarity=0.921 Sum_probs=141.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCee
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 81 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v 81 (192)
++.++++++|+++++++++..........++||||++||++++.+...+...++.+.+++|+||||+|||+|+.++||++
T Consensus 13 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v 92 (184)
T cd01743 13 NLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLGHQAIAEAFGGKV 92 (184)
T ss_pred HHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEE
Confidence 57899999999999999865443322334899999999999987766544444456678999999999999999999999
Q ss_pred eecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCC--eEEEEEcCCCceEEEeeCCCCceEEE
Q 029484 82 VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDA--LEVTAWTEDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~--~~~~a~s~~~~i~ai~~~~~~~~~g~ 159 (192)
.+.+. ..++.+.++... ++++|++++..+.++++|++.+.. ++.+ ++++|.++++.++|++++++| +||+
T Consensus 93 ~~~~~-~~~g~~~~v~~~---~~~~~~~~~~~~~~~~~H~~~v~~---~~~~~~~~~la~~~~~~v~a~~~~~~~-i~gv 164 (184)
T cd01743 93 VRAPE-PMHGKTSEIHHD---GSGLFKGLPQPFTVGRYHSLVVDP---DPLPDLLEVTASTEDGVIMALRHRDLP-IYGV 164 (184)
T ss_pred EeCCC-CCcCceeEEEEC---CCccccCCCCCcEEEeCcEEEEec---CCCCceEEEEEeCCCCeEEEEEeCCCC-EEEE
Confidence 99874 346666666554 567899999999999999999975 4444 899999999999999999887 9999
Q ss_pred eccCCCCCCCchHHHHHHHH
Q 029484 160 QFHPESIITTEGKTIVRNFI 179 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~ 179 (192)
|||||+..++.|.+||+||+
T Consensus 165 QfHPE~~~~~~g~~l~~~f~ 184 (184)
T cd01743 165 QFHPESILTEYGLRLLENFL 184 (184)
T ss_pred eeCCCcCCCcchHHHHHhhC
Confidence 99999988899999999995
|
Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese |
| >PRK05637 anthranilate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=237.28 Aligned_cols=176 Identities=31% Similarity=0.563 Sum_probs=144.0
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
+|+++.|+.+|+.+++++++ .+.+++...++|+|||+|||+++.+.....+.++....++||||||+|||+|+.++||+
T Consensus 15 ~nl~~~l~~~g~~~~v~~~~-~~~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGIClG~Qlla~alGG~ 93 (208)
T PRK05637 15 YNLVDAFAVAGYKCTVFRNT-VPVEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGICLGFQALLEHHGGK 93 (208)
T ss_pred HHHHHHHHHCCCcEEEEeCC-CCHHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEcHHHHHHHHHcCCe
Confidence 47899999999999999975 56777776789999999999999887655555554446899999999999999999999
Q ss_pred eeecCCccccccceeeEEc-ccCCCccccCCC------------CcccccccccccccccCCCCCCeEEEEEcCC--C-c
Q 029484 81 IVRSPLGVMHGKSSLVYYD-EKGEDGLLAGLS------------NPFTAGRYHSLVIEKESFPSDALEVTAWTED--G-L 144 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~------------~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~--~-~ 144 (192)
+.+.. ..+|.+..+..+ .+.++++|.+++ .++.++++|++.+.. ++++++++|++++ + .
T Consensus 94 V~~~~--~~~G~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~---lp~~~~vlA~s~~~~~~v 168 (208)
T PRK05637 94 VEPCG--PVHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCVV---APDGMESLGTCSSEIGPV 168 (208)
T ss_pred eccCC--cccceEEEeEECCCCCCCcccCCCCcccccccccccCCceEEEEechhhhhc---CCCCeEEEEEecCCCCCE
Confidence 98764 346666555443 233667888775 357899999999976 5689999999754 3 4
Q ss_pred eEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 145 IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 145 i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
++++++.+.+ +||+|||||...++.|..||+||++-+.
T Consensus 169 ~~a~~~~~~~-~~GvQfHPE~~~T~~G~~il~nfl~~~~ 206 (208)
T PRK05637 169 IMAAETTDGK-AIGLQFHPESVLSPTGPIILSRCVEQLL 206 (208)
T ss_pred EEEEEECCCC-EEEEEeCCccCcCCCHHHHHHHHHHHHh
Confidence 6788888876 9999999999999999999999998764
|
|
| >TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=233.56 Aligned_cols=172 Identities=26% Similarity=0.444 Sum_probs=142.3
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
++.++++..|+++++++++ .+.+++...++|||||+||++++++.... ..++. ++.++|+||||+|||+|+.++||+
T Consensus 13 ~l~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~glii~Gg~~~~~~~~~~-~~i~~~~~~~~PilGIC~G~Qll~~~lgg~ 90 (188)
T TIGR00888 13 LIARRLRELGVYSELVPNT-TPLEEIREKNPKGIILSGGPSSVYAENAP-RADEKIFELGVPVLGICYGMQLMAKQLGGE 90 (188)
T ss_pred HHHHHHHHcCCEEEEEeCC-CCHHHHhhcCCCEEEECCCCCCcCcCCch-HHHHHHHhCCCCEEEECHHHHHHHHhcCce
Confidence 5789999999999999975 45677776677899999999998876432 22332 567899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+... .+. ++..+.... .+++|.++++.+.++++|++.+.. ++++++++|+++++.+++++.++++ ++|+|
T Consensus 91 v~~~~~-~~~-g~~~v~~~~--~~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~vla~~~~~~v~a~~~~~~~-~~g~Q 162 (188)
T TIGR00888 91 VGRAEK-REY-GKAELEILD--EDDLFRGLPDESTVWMSHGDKVKE---LPEGFKVLATSDNCPVAAMAHEEKP-IYGVQ 162 (188)
T ss_pred EecCCC-ccc-eeEEEEEec--CCHhhcCCCCCcEEEeEccceeec---CCCCCEEEEECCCCCeEEEEECCCC-EEEEe
Confidence 998763 333 455555543 457999998889999999999865 5688999999999999999999876 99999
Q ss_pred ccCCCCCCCchHHHHHHHHHHHH
Q 029484 161 FHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 161 fHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
||||++.+++|.+||++|+..++
T Consensus 163 fHPE~~~~~~g~~i~~~f~~~~~ 185 (188)
T TIGR00888 163 FHPEVTHTEYGNELLENFVYDVC 185 (188)
T ss_pred eCCccCCChhhHHHHHHHHHHhh
Confidence 99999877789999999998654
|
separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit. |
| >PRK07765 para-aminobenzoate synthase component II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=233.59 Aligned_cols=175 Identities=45% Similarity=0.799 Sum_probs=141.3
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHh--ccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~--~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~g 78 (192)
++.+++++.|+++++++++.....+.. ..++|||||+|||+++.+.....+.+++ +++++||||||+|||+|+.++|
T Consensus 15 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~G 94 (214)
T PRK07765 15 NLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFG 94 (214)
T ss_pred HHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEEEEccCHHHHHHHhC
Confidence 578999999999999998642222222 2379999999999998766544455554 5678999999999999999999
Q ss_pred CeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEE
Q 029484 79 GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQG 158 (192)
Q Consensus 79 g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g 158 (192)
|++.+.+.. .+|....+... .+.+|.+++..+.++++|++.+..+.+ +++++++|+++++.++|+++++++ +||
T Consensus 95 G~v~~~~~~-~~g~~~~v~~~---~~~~~~~~~~~~~v~~~H~~~v~~~~l-p~~~~vla~s~~~~vqa~~~~~~~-i~g 168 (214)
T PRK07765 95 ATVDRAPEL-LHGKTSSVHHT---GVGVLAGLPDPFTATRYHSLTILPETL-PAELEVTARTDSGVIMAVRHRELP-IHG 168 (214)
T ss_pred CEEeeCCCC-ccCceeEEEEC---CCccccCCCCccEEEecchheEecccC-CCceEEEEEcCCCcEEEEEeCCCC-EEE
Confidence 999997643 35655555544 345888888889999999999964344 478999999999999999999877 999
Q ss_pred EeccCCCCCCCchHHHHHHHHHHH
Q 029484 159 VQFHPESIITTEGKTIVRNFIKMI 182 (192)
Q Consensus 159 ~QfHPE~~~~~~~~~l~~~f~~~~ 182 (192)
+|||||+..+..|.+++++|+..+
T Consensus 169 vQfHPE~~~t~~g~~~l~~f~~~~ 192 (214)
T PRK07765 169 VQFHPESVLTEGGHRMLANWLTVC 192 (214)
T ss_pred EeeCCCcccCcchHHHHHHHHHHh
Confidence 999999987789999999999765
|
|
| >KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=216.37 Aligned_cols=184 Identities=86% Similarity=1.402 Sum_probs=172.7
Q ss_pred cHHHHH-HhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYM-GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l-~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
|+.++| -+.|+.+.|.++|+...+++..+++++++|++|||.|.|.+--.+.++++...+|+||||+|.|.|.+++||+
T Consensus 33 Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~DsGIs~~~i~~f~~~iP~fGvCMGlQCi~e~fGGk 112 (223)
T KOG0026|consen 33 NLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGK 112 (223)
T ss_pred HHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccccchHHHHHHhCCCCceeeeehhhhhhhhhhCcE
Confidence 678888 7789999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+........||....+..+...+..+|+++++.+.+..+|+-+...+.||.+.++++|+++++.|++.+++.|.++-|+|
T Consensus 113 v~~a~~~i~HGK~S~i~~D~~~~~G~f~g~~q~~~V~RYHSLa~~~sSlP~d~L~VTawTEnG~iMgaRHkKY~~ieGVQ 192 (223)
T KOG0026|consen 113 IVRSPFGVMHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHSLVIEKDSFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQ 192 (223)
T ss_pred EeccCcceeeccccccccCCccccccccCCCCCeEEEeeeeeeeecccCCccceeeeEeccCcEEEeeecccccccccee
Confidence 99998778899999999887777889999999999999999999988898899999999999999999999998899999
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHH
Q 029484 161 FHPESIITTEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 161 fHPE~~~~~~~~~l~~~f~~~~~~~ 185 (192)
||||...++.|..++|||++...+.
T Consensus 193 fHPESIlteeGk~~irNflni~~~t 217 (223)
T KOG0026|consen 193 FHPESIITTEGKTIVRNFIKIVEKK 217 (223)
T ss_pred ecchhhhhhhhHHHHHHHHHhcccc
Confidence 9999999999999999999987643
|
|
| >cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=223.45 Aligned_cols=167 Identities=31% Similarity=0.489 Sum_probs=135.4
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc--hhHHHHHHhCCCCCEEeeeHhHHHHHHHhCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLELGPTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~--~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg 79 (192)
++.++|+.+|+++++++++ .+.++....++||||++||++++++.. .+.+.+ ++.++|+||||+|||+|+.++||
T Consensus 13 ~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~dgvIl~Gg~~~~~~~~~~~~~~~~--~~~~~PilGIC~G~Qll~~~~gg 89 (181)
T cd01742 13 LIARRVRELGVYSEILPNT-TPLEEIKLKNPKGIILSGGPSSVYEEDAPRVDPEI--FELGVPVLGICYGMQLIAKALGG 89 (181)
T ss_pred HHHHHHHhcCceEEEecCC-CChhhhcccCCCEEEECCCcccccccccchhhHHH--HhcCCCEEEEcHHHHHHHHhcCC
Confidence 5789999999999999975 344433344899999999999887653 222333 34589999999999999999999
Q ss_pred eeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEE
Q 029484 80 KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~ 159 (192)
++.+... . ..++..+... ..+++|.+++..+.++++|++.+.. ++++++++|+++++.++++++++++ ++|+
T Consensus 90 ~v~~~~~-~-~~G~~~v~~~--~~~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~~la~~~~~~i~a~~~~~~~-~~g~ 161 (181)
T cd01742 90 KVERGDK-R-EYGKAEIEID--DSSPLFEGLPDEQTVWMSHGDEVVK---LPEGFKVIASSDNCPVAAIANEEKK-IYGV 161 (181)
T ss_pred eEEeCCC-C-cceEEEEEec--CCChhhcCCCCceEEEcchhhhhhh---cCCCcEEEEeCCCCCEEEEEeCCCc-EEEE
Confidence 9999763 2 3345555433 3577999998889999999999975 5678999999999999999998776 9999
Q ss_pred eccCCCCCCCchHHHHHHHH
Q 029484 160 QFHPESIITTEGKTIVRNFI 179 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~ 179 (192)
|||||++.+++|.+||++|+
T Consensus 162 QfHPE~~~~~~g~~ll~~f~ 181 (181)
T cd01742 162 QFHPEVTHTEKGKEILKNFL 181 (181)
T ss_pred EcCCccccCcChHHHHHhhC
Confidence 99999997779999999984
|
Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >PRK00758 GMP synthase subunit A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=222.90 Aligned_cols=168 Identities=29% Similarity=0.441 Sum_probs=134.3
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCC-CeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNP-RGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~-dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
++.++++++|+++.+++++ .+.+++. ++ ||||++||+. ........+.++ +.++||||||+|||+|+.++||+
T Consensus 14 ~i~~~l~~~g~~~~~~~~~-~~~~~l~--~~~dgivi~Gg~~-~~~~~~~~~~l~--~~~~PilGIC~G~Q~L~~a~Gg~ 87 (184)
T PRK00758 14 LIHRTLRYLGVDAKIIPNT-TPVEEIK--AFEDGLILSGGPD-IERAGNCPEYLK--ELDVPILGICLGHQLIAKAFGGE 87 (184)
T ss_pred HHHHHHHHcCCcEEEEECC-CCHHHHh--hcCCEEEECCCCC-hhhccccHHHHH--hCCCCEEEEeHHHHHHHHhcCcE
Confidence 5789999999999999964 5666776 55 9999999983 322222222332 45799999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+.+. ..+| +..+..+. .+++|.+++..+.++++|++.+.. ++++++++|+++++.++|++.++++ ++|+|
T Consensus 88 v~~~~~-~~~g-~~~i~~~~--~~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~~la~~~~~~v~a~~~~~~~-~~g~Q 159 (184)
T PRK00758 88 VGRGEY-GEYA-LVEVEILD--EDDILKGLPPEIRVWASHADEVKE---LPDGFEILARSDICEVEAMKHKEKP-IYGVQ 159 (184)
T ss_pred EecCCC-ceee-eEEEEEcC--CChhhhCCCCCcEEEeehhhhhhh---CCCCCEEEEECCCCCEEEEEECCCC-EEEEE
Confidence 998763 3344 33444432 467898899899999999999965 5678999999999999999998876 99999
Q ss_pred ccCCCCCCCchHHHHHHHHHHHH
Q 029484 161 FHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 161 fHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
||||++.++++.+||++|++.+.
T Consensus 160 fHPE~~~~~~g~~l~~~f~~~~~ 182 (184)
T PRK00758 160 FHPEVAHTEYGEEIFKNFLEICG 182 (184)
T ss_pred cCCccCCCchHHHHHHHHHHHHc
Confidence 99999877899999999997653
|
|
| >COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=233.86 Aligned_cols=174 Identities=26% Similarity=0.505 Sum_probs=148.9
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCC
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg 79 (192)
.|+.+.|.+.|+++.|+|++ .+.+++...++|||+||.|||+|......+..+++ ++..+|++|||+|||+|+.|+|+
T Consensus 191 ~nIlr~L~~rg~~vtVVP~~-t~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~Ga 269 (368)
T COG0505 191 RNILRELVKRGCRVTVVPAD-TSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALGA 269 (368)
T ss_pred HHHHHHHHHCCCeEEEEcCC-CCHHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcCC
Confidence 37899999999999999985 88999988899999999999999776767777777 46667999999999999999999
Q ss_pred eeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceEE
Q 029484 80 KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQG 158 (192)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~g 158 (192)
+..+++.++ +|.++++.--. . .....+.++|+|+|+.+.+.... +++..+ +|+.+++++++++| +++
T Consensus 270 ~T~KmkFGH-rG~NhPV~dl~-------t--grv~ITSQNHGyaVd~~s~~~~~-~vth~nlnDgTvEGi~h~~~P-~fS 337 (368)
T COG0505 270 KTYKMKFGH-RGANHPVKDLD-------T--GRVYITSQNHGYAVDEDSLVETL-KVTHVNLNDGTVEGIRHKDLP-AFS 337 (368)
T ss_pred ceeecccCC-CCCCcCccccc-------C--CeEEEEecCCceecChhhcCCCc-eeEEEeCCCCCccceecCCCc-eEE
Confidence 999999775 88877764321 1 24567889999999987665443 788888 89999999999998 999
Q ss_pred EeccCCCCCCC-chHHHHHHHHHHHHHHhh
Q 029484 159 VQFHPESIITT-EGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 159 ~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~ 187 (192)
+|||||.+++| |...||..|++++...+.
T Consensus 338 VQ~HPEAsPGPhDt~ylFd~Fi~~~~~~~~ 367 (368)
T COG0505 338 VQYHPEASPGPHDTRYLFDEFIELMEAAKK 367 (368)
T ss_pred EccCCCCCCCCcccHHHHHHHHHHHHHhhc
Confidence 99999999999 899999999999986653
|
|
| >COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=223.15 Aligned_cols=171 Identities=32% Similarity=0.420 Sum_probs=141.2
Q ss_pred HHHHHHhCC-CeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHH----HHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 3 FLKYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQ----TVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 3 l~~~l~~~g-~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~----~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+.+++++.| ...+++++ ..+.+++...++||+||+|||.++++...|.. .|++ ...++||||||+|||+|+.+
T Consensus 17 i~r~~re~g~v~~e~~~~-~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~ 95 (198)
T COG0518 17 IARRLRELGYVYSEIVPY-TGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKA 95 (198)
T ss_pred HHHHHHHcCCceEEEEeC-CCCcccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHH
Confidence 678999999 77777776 46777777778899999999999998875543 3333 34667899999999999999
Q ss_pred hCCeeeecCCccccccceeeEEcccCCCccccCCCCcc-cccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCc
Q 029484 77 FGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPF-TAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKH 155 (192)
Q Consensus 77 ~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~ 155 (192)
+||+|.+... .+. ++.++.... ..+.+|++++... .+++||+|.+.. ++++++++|+|+.+++++++.. .+
T Consensus 96 lGg~V~~~~~-~E~-G~~~v~~~~-~~~~l~~gl~~~~~~v~~sH~D~v~~---lP~g~~vlA~s~~cp~qa~~~~-~~- 167 (198)
T COG0518 96 LGGKVERGPK-REI-GWTPVELTE-GDDPLFAGLPDLFTTVFMSHGDTVVE---LPEGAVVLASSETCPNQAFRYG-KR- 167 (198)
T ss_pred hCCEEeccCC-Ccc-ceEEEEEec-CccccccCCccccCccccchhCcccc---CCCCCEEEecCCCChhhheecC-Cc-
Confidence 9999999874 434 456666654 4557999998888 599999999987 6789999999999999999988 44
Q ss_pred eEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 156 LQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 156 ~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
+||+|||||.+. +.+..+++||...+.
T Consensus 168 ~~gvQFHpEv~~-~~~~~~l~nf~~~i~ 194 (198)
T COG0518 168 AYGVQFHPEVTH-EYGEALLENFAHEIC 194 (198)
T ss_pred EEEEeeeeEEeH-HHHHHHHHHhhhhhc
Confidence 999999999984 789999999997443
|
|
| >PLN02347 GMP synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=248.76 Aligned_cols=177 Identities=23% Similarity=0.352 Sum_probs=146.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch--hHHHHHH--hCCCCCEEeeeHhHHHHHHHh
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLE--LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~--~~~~~~~--~~~~~PilGIC~G~Q~l~~~~ 77 (192)
+++++++++|+.+++++++ .+.+++...++|||||+|||+++++.+. +...+.+ .+.++||||||+|||+|+.++
T Consensus 25 ~I~r~lrelgv~~~v~p~~-~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~al 103 (536)
T PLN02347 25 LITRRVRELGVYSLLLSGT-ASLDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKL 103 (536)
T ss_pred HHHHHHHHCCCeEEEEECC-CCHHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHc
Confidence 6889999999999999975 6788887678999999999999976542 2233332 246899999999999999999
Q ss_pred CCeeeecCCccccccceeeEEcccCCCccccCCCCc--ccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCc
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNP--FTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKH 155 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~ 155 (192)
||+|.+.. ..++| +..+... .++++|++++.. +.++++|++.+.. ++++++++|+++++.++++++.+.|
T Consensus 104 GG~V~~~~-~~e~G-~~~v~i~--~~~~Lf~~l~~~~~~~v~~~Hsd~V~~---lP~g~~vlA~s~~~~iaai~~~~~~- 175 (536)
T PLN02347 104 GGEVKPGE-KQEYG-RMEIRVV--CGSQLFGDLPSGETQTVWMSHGDEAVK---LPEGFEVVAKSVQGAVVAIENRERR- 175 (536)
T ss_pred CCEEEecC-Ccccc-eEEEEEc--CCChhhhcCCCCceEEEEEEEEEEeee---CCCCCEEEEEeCCCcEEEEEECCCC-
Confidence 99999876 34454 4445443 356799999876 7899999999865 5689999999999999999998876
Q ss_pred eEEEeccCCCCCCCchHHHHHHHHHHHHHHhh
Q 029484 156 LQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 156 ~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~~~ 187 (192)
+||+|||||++.++.|.+|++||+..+++++.
T Consensus 176 i~GvQFHPE~~~t~~G~~iL~NFl~~ic~~~~ 207 (536)
T PLN02347 176 IYGLQYHPEVTHSPKGMETLRHFLFDVCGVTA 207 (536)
T ss_pred EEEEEccCCCCccchHHHHHHHHHHHHhCcCC
Confidence 99999999999889999999999987776543
|
|
| >PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=224.61 Aligned_cols=176 Identities=35% Similarity=0.582 Sum_probs=140.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHH--hccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~--~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~g 78 (192)
+|.+++++.|.++++++++. +..+. ...++||+||+||++++++.....+.++. .+.++|+||||+|||+|+.++|
T Consensus 12 ~l~~~l~~~~~~~~v~~~~~-~~~~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~Q~la~~~G 90 (192)
T PF00117_consen 12 SLVRALRELGIDVEVVRVDS-DFEEPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGICLGHQILAHALG 90 (192)
T ss_dssp HHHHHHHHTTEEEEEEETTG-GHHHHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHHHHHHHHTT
T ss_pred HHHHHHHHCCCeEEEEECCC-chhhhhhhhcCCCEEEECCcCCccccccccccccccccccceEEEEEeehhhhhHHhcC
Confidence 68999999999999999863 33333 24589999999999999984444444544 4579999999999999999999
Q ss_pred CeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCC-ceEEEeeCCCCceE
Q 029484 79 GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQ 157 (192)
Q Consensus 79 g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~-~i~ai~~~~~~~~~ 157 (192)
+++.+.......+....+.... .++++.++++.+.++++|++.|....+.+++++++|+++++ .++++.+.++| ++
T Consensus 91 ~~v~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~H~~~v~~~~~~p~~~~~la~s~~~~~~~~~~~~~~~-i~ 167 (192)
T PF00117_consen 91 GKVVPSPEKPHHGGNIPISETP--EDPLFYGLPESFKAYQYHSDAVNPDDLLPEGFEVLASSSDGCPIQAIRHKDNP-IY 167 (192)
T ss_dssp HEEEEEESEEEEEEEEEEEEEE--EHGGGTTSTSEEEEEEEECEEEEEGHHHHTTEEEEEEETTTTEEEEEEECTTS-EE
T ss_pred Cccccccccccccccccccccc--ccccccccccccccccccceeeecccccccccccccccccccccccccccccE-EE
Confidence 9999876333344444443322 25789999999999999999997422235789999999765 89999999987 99
Q ss_pred EEeccCCCCCCCchHHHHHHHHHH
Q 029484 158 GVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 158 g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
|+|||||++.++.+..+++||+-.
T Consensus 168 g~QfHPE~~~~~~~~~~l~nf~~~ 191 (192)
T PF00117_consen 168 GVQFHPEFSSSPGGPQLLKNFFLK 191 (192)
T ss_dssp EESSBTTSTTSTTHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCcchhhhheeEe
Confidence 999999999888999999999754
|
The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B .... |
| >PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=249.43 Aligned_cols=177 Identities=50% Similarity=0.876 Sum_probs=150.5
Q ss_pred CcHHHHHHhCCCe-EEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCC
Q 029484 1 MTFLKYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 1 ~~l~~~l~~~g~~-~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg 79 (192)
+||++.|++.|.+ +.+++.++.+.+++...++||||++|||+++.+.+...+.++.+..++||||||+|||+|+.++||
T Consensus 13 ~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~~~~~~li~~~~~~~PvLGIClG~QlLa~a~Gg 92 (534)
T PRK14607 13 YNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGISVEVIRHFSGKVPILGVCLGHQAIGYAFGG 92 (534)
T ss_pred HHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhCCccHHHHHHhhcCCCEEEEcHHHHHHHHHcCC
Confidence 4899999999996 777766667788887678999999999999988776666666677889999999999999999999
Q ss_pred eeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEE
Q 029484 80 KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~ 159 (192)
++.+... ..+|.+..+... .+++|.+++..+.++++|++.+....+ +++++++|+++++.+++++++++| +||+
T Consensus 93 ~V~~~~~-~~~G~~~~v~~~---~~~lf~~~~~~~~v~~~Hs~~v~~~~l-p~~~~vlA~s~d~~i~a~~~~~~p-i~Gv 166 (534)
T PRK14607 93 KIVHAKR-ILHGKTSPIDHN---GKGLFRGIPNPTVATRYHSLVVEEASL-PECLEVTAKSDDGEIMGIRHKEHP-IFGV 166 (534)
T ss_pred eEecCCc-cccCCceeEEEC---CCcchhcCCCCcEEeeccchheecccC-CCCeEEEEEcCCCCEEEEEECCCC-EEEE
Confidence 9999874 346766665543 456899988889999999999864444 478999999999999999999987 9999
Q ss_pred eccCCCCCCCchHHHHHHHHHHHH
Q 029484 160 QFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
|||||+..++++.+||++|++.+.
T Consensus 167 QFHPE~~~t~~g~~i~~nFl~~~~ 190 (534)
T PRK14607 167 QFHPESILTEEGKRILKNFLNYQR 190 (534)
T ss_pred EeCCCCCCChhHHHHHHHHHHHhh
Confidence 999999877899999999998764
|
|
| >TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=236.02 Aligned_cols=170 Identities=29% Similarity=0.520 Sum_probs=138.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCee
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 81 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v 81 (192)
|++++|+++|+.+++++++ .+.+++....+|||||+|||+++.+....++.++++-.++||||||+|||+|+.++||++
T Consensus 186 ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~~~PILGIClG~QlLa~a~Gg~v 264 (358)
T TIGR01368 186 NILRRLVKRGCEVTVVPYD-TDAEEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLEKIPIFGICLGHQLLALAFGAKT 264 (358)
T ss_pred HHHHHHHHCCCEEEEEcCC-CCHHHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCce
Confidence 7899999999999999975 567777766789999999999987655555556553338999999999999999999999
Q ss_pred eecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceEEEe
Q 029484 82 VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~g~Q 160 (192)
.+++++ .+|..+++.... . ...+.+.++|+++|..+.++.+++++++++ +|+.|++++++++| ++|+|
T Consensus 265 ~kl~~g-h~G~nhpV~~~~--~-------~~v~itsqnH~~aV~~~~l~~~~l~vta~~~nDg~Vegi~h~~~p-i~gVQ 333 (358)
T TIGR01368 265 YKMKFG-HRGGNHPVKDLI--T-------GRVEITSQNHGYAVDPDSLPAGDLEVTHVNLNDGTVEGIRHKDLP-VFSVQ 333 (358)
T ss_pred eccCcC-cCCCceeeEECC--C-------CcEEEeecCCCcEEcccccCCCceEEEEEECCCCcEEEEEECCCC-EEEEE
Confidence 998754 366665554321 0 123456678999998766665789999997 78999999999998 99999
Q ss_pred ccCCCCCCC-chHHHHHHHHHHHH
Q 029484 161 FHPESIITT-EGKTIVRNFIKMIV 183 (192)
Q Consensus 161 fHPE~~~~~-~~~~l~~~f~~~~~ 183 (192)
||||+..++ +...||++|++++.
T Consensus 334 fHPE~~~gp~d~~~lF~~F~~~~~ 357 (358)
T TIGR01368 334 YHPEASPGPHDTEYLFDEFIDLIK 357 (358)
T ss_pred ECCCCCCCCCChHHHHHHHHHHhh
Confidence 999999888 67889999998874
|
This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. |
| >PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=245.63 Aligned_cols=175 Identities=33% Similarity=0.605 Sum_probs=143.6
Q ss_pred CcHHHHHHhCCCeEEEEeCCCC---CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHh
Q 029484 1 MTFLKYMGELGYHFEVYRNDEL---TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~---~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~ 77 (192)
+||++.+++.|.++.|++.+.. ..+++...++|+|||+|||+++.+.+.....+..+..++||||||+|||+|+.++
T Consensus 15 ~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~~~i~~~~~~~iPILGIClG~QlLa~a~ 94 (531)
T PRK09522 15 YNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAY 94 (531)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhCCCCHHHHHHHhcCCCEEEEcHHHHHHHHhc
Confidence 4799999999999999986421 2556665678999999999999887655444545667899999999999999999
Q ss_pred CCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceE
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQ 157 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~ 157 (192)
||+|.+.. ...+|....+.. ..+++|.+++..+.++.+|++.+.. ++++++++|+ +++.++++++.+.+ +|
T Consensus 95 GG~V~~~~-~~~~G~~~~i~~---~~~~lf~~~~~~~~v~~~Hs~~v~~---lP~~l~vlA~-sd~~v~ai~~~~~~-i~ 165 (531)
T PRK09522 95 GGYVGQAG-EILHGKASSIEH---DGQAMFAGLTNPLPVARYHSLVGSN---IPAGLTINAH-FNGMVMAVRHDADR-VC 165 (531)
T ss_pred CCEEEeCC-ceeeeeEEEEee---cCCccccCCCCCcEEEEehheeccc---CCCCcEEEEe-cCCCEEEEEECCCC-EE
Confidence 99999875 233554443332 2456899999899999999999865 5689999997 58889999998876 99
Q ss_pred EEeccCCCCCCCchHHHHHHHHHHHHH
Q 029484 158 GVQFHPESIITTEGKTIVRNFIKMIVR 184 (192)
Q Consensus 158 g~QfHPE~~~~~~~~~l~~~f~~~~~~ 184 (192)
|+|||||+..++.|..|++||++.+..
T Consensus 166 GVQFHPEs~~T~~G~~il~NFl~~~~~ 192 (531)
T PRK09522 166 GFQFHPESILTTQGARLLEQTLAWAQQ 192 (531)
T ss_pred EEEecCccccCcchHHHHHHHHHHHhh
Confidence 999999999999999999999988753
|
|
| >PRK12838 carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=231.91 Aligned_cols=171 Identities=29% Similarity=0.540 Sum_probs=139.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCee
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 81 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v 81 (192)
|++++|+++|+.+.+++++ .+.+++...++|||||+|||+++.+...+++.++++...+|+||||+|||+|+.++||++
T Consensus 180 ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~~PvlGIClG~QlLa~a~Gg~v 258 (354)
T PRK12838 180 SILRSLSKRGCKVTVLPYD-TSLEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISSYPILGICLGHQLIALALGADT 258 (354)
T ss_pred HHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcCCCEEEECHHHHHHHHHhCCEE
Confidence 7899999999999999975 556777666899999999999987776666666664334999999999999999999999
Q ss_pred eecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceEEEe
Q 029484 82 VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~g~Q 160 (192)
.+++.+ .+|..+++..... + ..+.+.++|+++|..+.++..++.+++.+ +|+.|+|++++++| ++|+|
T Consensus 259 ~kl~~g-h~G~~hpV~~~~~--~-------~~~~ts~~H~~aV~~~sl~~~~l~v~a~~~~Dg~Veai~~~~~p-i~gVQ 327 (354)
T PRK12838 259 EKLPFG-HRGANHPVIDLTT--G-------RVWMTSQNHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKKKP-VLSVQ 327 (354)
T ss_pred ecCCCC-ccCCceEEEECCC--C-------eEEEeccchheEecccccCCCCcEEEEEECCCCeEEEEEECCCC-EEEEE
Confidence 998755 3677766654321 1 22456688999997666654568999975 79999999999988 99999
Q ss_pred ccCCCCCCC-chHHHHHHHHHHHHH
Q 029484 161 FHPESIITT-EGKTIVRNFIKMIVR 184 (192)
Q Consensus 161 fHPE~~~~~-~~~~l~~~f~~~~~~ 184 (192)
||||+..++ ++..||++|++++.+
T Consensus 328 fHPE~~~gp~d~~~lF~~F~~~~~~ 352 (354)
T PRK12838 328 FHPEAHPGPHDAEYIFDEFLEMMEK 352 (354)
T ss_pred eCCCCCCCCccHHHHHHHHHHHHHh
Confidence 999998887 788999999998863
|
|
| >cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=213.71 Aligned_cols=166 Identities=28% Similarity=0.521 Sum_probs=129.6
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCC
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg 79 (192)
+|++++++++|+.+++++++ .+.+++...++||||++||++++.+.....+.+++ +++++|+||||+|+|+|+.++||
T Consensus 10 ~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg 88 (178)
T cd01744 10 HNILRELLKRGCEVTVVPYN-TDAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQLLALALGA 88 (178)
T ss_pred HHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHHHHHHHHHcCC
Confidence 37899999999999999986 45556555589999999999987665555555554 56789999999999999999999
Q ss_pred eeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceEE
Q 029484 80 KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQG 158 (192)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~g 158 (192)
++.+.+.+ .++...++.... . ...+.++.+|++.+..+.++ ++++++|++ +++.++++++++.| +||
T Consensus 89 ~v~~~~~~-~~g~~~~v~~~~--~-------~~~~~v~~~H~~~v~~~~lp-~~~~v~a~s~~~~~i~a~~~~~~~-i~G 156 (178)
T cd01744 89 KTYKMKFG-HRGSNHPVKDLI--T-------GRVYITSQNHGYAVDPDSLP-GGLEVTHVNLNDGTVEGIRHKDLP-VFS 156 (178)
T ss_pred ceecCCCC-CCCCceeeEEcC--C-------CCcEEEEcCceEEEcccccC-CceEEEEEECCCCcEEEEEECCCC-eEE
Confidence 99986532 244444433221 0 13355778999999754554 689999997 68899999999887 999
Q ss_pred EeccCCCCCCC-chHHHHHHHH
Q 029484 159 VQFHPESIITT-EGKTIVRNFI 179 (192)
Q Consensus 159 ~QfHPE~~~~~-~~~~l~~~f~ 179 (192)
+|||||+..++ +..+||.+|+
T Consensus 157 vQfHPE~~~~~~~~~~lf~~f~ 178 (178)
T cd01744 157 VQFHPEASPGPHDTEYLFDEFL 178 (178)
T ss_pred EeeCCCCCCCCCCchHhHhhhC
Confidence 99999998775 6778999985
|
This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is |
| >PRK00074 guaA GMP synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=244.90 Aligned_cols=174 Identities=29% Similarity=0.474 Sum_probs=144.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch--hHHHHHHhCCCCCEEeeeHhHHHHHHHhCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~--~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg 79 (192)
+++++++++|+.+++++++ .+.+++...++|||||+||+.++++... ..+.+ ++.++||||||+|||+|+.++||
T Consensus 18 li~r~lrelg~~~~v~p~~-~~~~~l~~~~~dgIIlsGGp~sv~~~~~p~~~~~i--~~~~~PvLGIC~G~QlLa~~lGG 94 (511)
T PRK00074 18 LIARRVRELGVYSEIVPYD-ISAEEIRAFNPKGIILSGGPASVYEEGAPRADPEI--FELGVPVLGICYGMQLMAHQLGG 94 (511)
T ss_pred HHHHHHHHCCCeEEEEECC-CCHHHHhccCCCEEEECCCCcccccCCCccccHHH--HhCCCCEEEECHHHHHHHHHhCC
Confidence 5789999999999999974 5677887667899999999999877543 22322 45689999999999999999999
Q ss_pred eeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEE
Q 029484 80 KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~ 159 (192)
++.+.. ..+.| +..+.... ++++|++++..+.++++|++.|.. ++++++++|+++++.++++++.+.+ +||+
T Consensus 95 ~V~~~~-~~e~G-~~~i~i~~--~~~Lf~~l~~~~~v~~~H~d~V~~---lp~g~~vlA~s~~~~v~ai~~~~~~-i~Gv 166 (511)
T PRK00074 95 KVERAG-KREYG-RAELEVDN--DSPLFKGLPEEQDVWMSHGDKVTE---LPEGFKVIASTENCPIAAIANEERK-FYGV 166 (511)
T ss_pred eEEecC-Ccccc-eEEEEEcC--CChhhhcCCCceEEEEECCeEEEe---cCCCcEEEEEeCCCCEEEEEeCCCC-EEEE
Confidence 999986 33454 44455442 567999998889999999999976 5689999999999999999988776 9999
Q ss_pred eccCCCCCCCchHHHHHHHHHHHHHHh
Q 029484 160 QFHPESIITTEGKTIVRNFIKMIVRKE 186 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~~~~~~~~ 186 (192)
|||||++.+++|.+||+||+..+++++
T Consensus 167 QFHPE~~~t~~G~~il~nFl~~i~~~~ 193 (511)
T PRK00074 167 QFHPEVTHTPQGKKLLENFVFDICGCK 193 (511)
T ss_pred eCCCCcCCchhHHHHHHHHHHHhcCCC
Confidence 999999988899999999997766543
|
|
| >PRK12564 carbamoyl phosphate synthase small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=232.57 Aligned_cols=168 Identities=29% Similarity=0.527 Sum_probs=136.4
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
|++++|+++|+.+.+++++ .+.+++...++|||||+|||+++.+.....+.++. ++.++|+||||+|||+|+.++||+
T Consensus 190 nivr~L~~~G~~v~vvp~~-~~~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~ 268 (360)
T PRK12564 190 NILRELAERGCRVTVVPAT-TTAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALGAK 268 (360)
T ss_pred HHHHHHHHCCCEEEEEeCC-CCHHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCc
Confidence 7899999999999999975 56777776689999999999988665444445554 456899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceEEE
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~g~ 159 (192)
+.+.+.+ .+|...++.... .+..+.+.++|+++|+.++++ +++++++++ +|+.+++++++++| ++|+
T Consensus 269 v~kl~~g-h~G~~~pv~~~~---------~~~~~its~~H~~~V~~~~lp-~~l~v~a~~~~Dg~iegi~~~~~p-i~gV 336 (360)
T PRK12564 269 TYKMKFG-HRGANHPVKDLE---------TGKVEITSQNHGFAVDEDSLP-ANLEVTHVNLNDGTVEGLRHKDLP-AFSV 336 (360)
T ss_pred EeccCCC-ccCCceeeEECC---------CCcEEEEecCcccEEcccccC-CceEEEEEeCCCCcEEEEEECCCC-EEEE
Confidence 9998754 356555554321 013356778999999765664 679999998 68999999999988 9999
Q ss_pred eccCCCCCCC-chHHHHHHHHHHH
Q 029484 160 QFHPESIITT-EGKTIVRNFIKMI 182 (192)
Q Consensus 160 QfHPE~~~~~-~~~~l~~~f~~~~ 182 (192)
|||||+..++ ++..||++|++++
T Consensus 337 QfHPE~~~gp~d~~~lF~~F~~~~ 360 (360)
T PRK12564 337 QYHPEASPGPHDSAYLFDEFVELM 360 (360)
T ss_pred EeCCcCCCCCCCHHHHHHHHHHhC
Confidence 9999999887 6889999999863
|
|
| >CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=230.77 Aligned_cols=172 Identities=24% Similarity=0.462 Sum_probs=137.5
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCC
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg 79 (192)
+||+++|+++|+++.+++++ .+.+++...++|||||+|||+++.+...+.+.+++ ++.++||||||+|||+|+.++||
T Consensus 204 ~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a~Gg 282 (382)
T CHL00197 204 YNILRRLKSFGCSITVVPAT-SPYQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEA 282 (382)
T ss_pred HHHHHHHHHCCCeEEEEcCC-CCHHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhCC
Confidence 37899999999999999975 66778877789999999999999776666666655 35689999999999999999999
Q ss_pred eeeecCCccccccceeeEEcccCCCccccCCCCcc-cccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceE
Q 029484 80 KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPF-TAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQ 157 (192)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~ 157 (192)
++.+++.+. .+...++. +...+ ...++|++.+..+.++..++.+++.+ +|+.+++++++++| ++
T Consensus 283 ~v~k~~~Gh-~g~n~pv~------------~~~~v~itsq~H~~~v~~~sv~~~~~~vt~~~~nDgtvegi~h~~~p-i~ 348 (382)
T CHL00197 283 KTFKLKFGH-RGLNHPSG------------LNQQVEITSQNHGFAVNLESLAKNKFYITHFNLNDGTVAGISHSPKP-YF 348 (382)
T ss_pred EEeccCCCC-CCCCEecC------------CCCceEEeecchheEeeccccCCCCcEEEEEECCCCCEEEEEECCCC-cE
Confidence 999987553 34333221 11222 33478999997766654578888875 78999999999997 99
Q ss_pred EEeccCCCCCCC-chHHHHHHHHHHHHHHhh
Q 029484 158 GVQFHPESIITT-EGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 158 g~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~ 187 (192)
|+|||||+..++ +...+|++|++++.+.+.
T Consensus 349 gVQFHPE~~~gp~d~~~lf~~Fv~~~~~~~~ 379 (382)
T CHL00197 349 SVQYHPEASPGPHDADYLFEYFIEIIKHSKS 379 (382)
T ss_pred EEeeCCCCCCCCCCHHHHHHHHHHHHHhhhc
Confidence 999999999888 566799999999876543
|
|
| >TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=244.82 Aligned_cols=177 Identities=39% Similarity=0.670 Sum_probs=144.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
+|.++|++.|+++.+++++ ...+.+...++|+|||+||||++.+... .+.+++ ++.++||||||+|||+|+.++||+
T Consensus 531 ~l~~~L~~~G~~v~vv~~~-~~~~~~~~~~~DgLILsgGPGsp~d~~~-~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~ 608 (717)
T TIGR01815 531 TLANYLRQTGASVTTLRHS-HAEAAFDERRPDLVVLSPGPGRPADFDV-AGTIDAALARGLPVFGVCLGLQGMVEAFGGA 608 (717)
T ss_pred HHHHHHHHCCCeEEEEECC-CChhhhhhcCCCEEEEcCCCCCchhccc-HHHHHHHHHCCCCEEEECHHHHHHhhhhCCE
Confidence 7899999999999999875 3333333348999999999999987543 333433 568899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+.+. ..+|.+..+.... .+++|++++..+.++++|++.+..+.++ ++++++|+++++.++|+++++.| +||+|
T Consensus 609 V~~~~~-p~~G~~~~V~~~~--~~~Lf~~lp~~~~v~~~HS~~~~~~~LP-~~~~vlA~s~d~~v~Ai~~~~~~-i~GVQ 683 (717)
T TIGR01815 609 LDVLPE-PVHGKASRIRVLG--PDALFAGLPERLTVGRYHSLFARRDRLP-AELTVTAESADGLIMAIEHRRLP-LAAVQ 683 (717)
T ss_pred EEECCC-CeeCcceEEEECC--CChhhhcCCCCCEEEEECCCCcccccCC-CCeEEEEEeCCCcEEEEEECCCC-EEEEE
Confidence 999874 3577776665543 4679999999999999999987544444 78999999999999999999877 99999
Q ss_pred ccCCCCCC---CchHHHHHHHHHHHHHH
Q 029484 161 FHPESIIT---TEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 161 fHPE~~~~---~~~~~l~~~f~~~~~~~ 185 (192)
||||+..+ ..|.+||+||+..+...
T Consensus 684 FHPEsi~T~sg~~G~~ilkNfl~~~~~~ 711 (717)
T TIGR01815 684 FHPESIMTLDGGAGLAMIGNVVDRLAAG 711 (717)
T ss_pred eCCeeCCccCchhHHHHHHHHHHHHhhc
Confidence 99999644 45899999999988643
|
This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate. |
| >PRK13566 anthranilate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=245.09 Aligned_cols=175 Identities=44% Similarity=0.727 Sum_probs=145.3
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
+|++++++.|+++++++++ .+.+.+...++|||||+|||+++.+.. ....++. +++++||||||+|||+|+.++||+
T Consensus 541 ~l~~~Lr~~G~~v~vv~~~-~~~~~~~~~~~DgVVLsgGpgsp~d~~-~~~lI~~a~~~~iPILGIClG~QlLa~alGG~ 618 (720)
T PRK13566 541 TLANYFRQTGAEVTTVRYG-FAEEMLDRVNPDLVVLSPGPGRPSDFD-CKATIDAALARNLPIFGVCLGLQAIVEAFGGE 618 (720)
T ss_pred HHHHHHHHCCCEEEEEECC-CChhHhhhcCCCEEEECCCCCChhhCC-cHHHHHHHHHCCCcEEEEehhHHHHHHHcCCE
Confidence 6899999999999999985 445555556899999999999987654 2333443 567899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+.... .+|.+..+.... .+.+|++++..+.++++|++.+..+.++ ++++++|.++++.|++++++++| +||+|
T Consensus 619 V~~~~~~-~~G~~~~V~v~~--~~~Lf~~lp~~~~v~~~Hs~~v~~~~Lp-~~~~vlA~s~dg~V~ai~~~~~p-i~GVQ 693 (720)
T PRK13566 619 LGQLAYP-MHGKPSRIRVRG--PGRLFSGLPEEFTVGRYHSLFADPETLP-DELLVTAETEDGVIMAIEHKTLP-VAAVQ 693 (720)
T ss_pred EEECCCC-ccCCceEEEECC--CCchhhcCCCCCEEEEecceeEeeccCC-CceEEEEEeCCCcEEEEEECCCC-EEEEe
Confidence 9998743 477777776653 4579999999999999999887644554 78999999999999999999877 99999
Q ss_pred ccCCCCCC---CchHHHHHHHHHHHH
Q 029484 161 FHPESIIT---TEGKTIVRNFIKMIV 183 (192)
Q Consensus 161 fHPE~~~~---~~~~~l~~~f~~~~~ 183 (192)
||||+..+ +.|.+||+||+..+.
T Consensus 694 FHPE~i~t~~~~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 694 FHPESIMTLGGDVGLRIIENVVRLLA 719 (720)
T ss_pred ccCeeCCcCCchhHHHHHHHHHHHhh
Confidence 99999754 469999999998764
|
|
| >PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=229.36 Aligned_cols=162 Identities=28% Similarity=0.511 Sum_probs=133.2
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
+||++.|+++|+++++++++ .+.+++...++|||||+|||+++.+.....+.++++..++||||||+|||+|+.++||+
T Consensus 252 ~nIlr~L~~~G~~v~VvP~~-~~~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~~~iPIlGICLGhQlLa~AlGGk 330 (415)
T PLN02771 252 HNILRRLASYGCKITVVPST-WPASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGICMGHQLLGQALGGK 330 (415)
T ss_pred HHHHHHHHHcCCeEEEECCC-CCHHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHHhCCCEEEEcHHHHHHHHhcCCe
Confidence 47899999999999999985 67788877799999999999999877666666666546899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceEEE
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~g~ 159 (192)
+.+++.+ .+|...++..... .....+.++|+++|+.+.++ .++++++.+ +|+.+++++++++| ++|+
T Consensus 331 v~K~~~G-h~G~n~pV~~~~~---------~~v~itsqnHg~aVd~~sLp-~~~~vt~~nlnDgtvegi~~~~~p-i~gV 398 (415)
T PLN02771 331 TFKMKFG-HHGGNHPVRNNRT---------GRVEISAQNHNYAVDPASLP-EGVEVTHVNLNDGSCAGLAFPALN-VMSL 398 (415)
T ss_pred EEECCCC-cccceEEEEECCC---------CCEEEEecCHHHhhccccCC-CceEEEEEeCCCCcEEEEEECCCC-EEEE
Confidence 9999865 4777766553211 12235678999999766664 689999987 79999999999987 9999
Q ss_pred eccCCCCCCC-chHHHH
Q 029484 160 QFHPESIITT-EGKTIV 175 (192)
Q Consensus 160 QfHPE~~~~~-~~~~l~ 175 (192)
|||||..++| |...+|
T Consensus 399 QFHPEa~pgp~Ds~~~F 415 (415)
T PLN02771 399 QYHPEASPGPHDSDNAF 415 (415)
T ss_pred EcCCCCCCCCCcChhhC
Confidence 9999999998 555543
|
|
| >PRK09065 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=214.19 Aligned_cols=165 Identities=25% Similarity=0.309 Sum_probs=128.4
Q ss_pred HHHHHhCCCeEEEEeCCCCC-HHHHhccCCCeEEECCCCCCCCCcchhHHH----HHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 4 LKYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSGISLQT----VLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~-~~~~~~~~~dglii~GG~~~~~~~~~~~~~----~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
.+.++..|.++.+++..... ..++. ++|||||+||+.+.++..+|+.. +++ ++.++||||||+|||+|+.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~~~--~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~al 105 (237)
T PRK09065 28 RVALGLAEQPVVVVRVFAGEPLPAPD--DFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHAL 105 (237)
T ss_pred HHHhccCCceEEEEeccCCCCCCChh--hcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHc
Confidence 34455678999988775322 22333 89999999999999887776533 333 567899999999999999999
Q ss_pred CCeeeecCCccccccceeeEEc-ccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCce
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYD-EKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHL 156 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~ 156 (192)
||+|.+.+.+.+.| +..+..+ .+..+++|+++++.+.++++|++.+.. ++++++++|+++++.+++++.++ ++
T Consensus 106 Gg~V~~~~~g~e~G-~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~d~v~~---lp~~~~~la~s~~~~iqa~~~~~--~i 179 (237)
T PRK09065 106 GGEVGYNPAGRESG-TVTVELHPAAADDPLFAGLPAQFPAHLTHLQSVLR---LPPGAVVLARSAQDPHQAFRYGP--HA 179 (237)
T ss_pred CCccccCCCCCccc-eEEEEEccccccChhhhcCCccCcEeeehhhhhhh---CCCCCEEEEcCCCCCeeEEEeCC--CE
Confidence 99999886554444 4555544 344677999999999999999999875 56899999999999999999875 49
Q ss_pred EEEeccCCCCCCCchHHHHHHHHHH
Q 029484 157 QGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 157 ~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
+|+|||||++ ..+++.|++.
T Consensus 180 ~gvQfHPE~~-----~~~~~~~~~~ 199 (237)
T PRK09065 180 WGVQFHPEFT-----AHIMRAYLRA 199 (237)
T ss_pred EEEEeCCcCC-----HHHHHHHHHh
Confidence 9999999996 5566666653
|
|
| >PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=212.30 Aligned_cols=180 Identities=25% Similarity=0.307 Sum_probs=128.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc--cCCCeEEECCCCCCCC--------Ccc---hh-----HHHHHH-hCCCCCE
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQ--------DSG---IS-----LQTVLE-LGPTVPL 63 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglii~GG~~~~~--------~~~---~~-----~~~~~~-~~~~~Pi 63 (192)
++++++.+|.....++....+.+.+.. ..+||||++||+.+.. +.. .. ++.++. +++++||
T Consensus 31 y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PI 110 (254)
T PRK11366 31 YLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPI 110 (254)
T ss_pred HHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCE
Confidence 567888899888888753222222211 2699999999986652 111 11 123333 6789999
Q ss_pred EeeeHhHHHHHHHhCCeeeecCC----ccccc------------cceeeEEcccCCCccccCC-C--Ccccccccccccc
Q 029484 64 FGVCMGLQCIGEAFGGKIVRSPL----GVMHG------------KSSLVYYDEKGEDGLLAGL-S--NPFTAGRYHSLVI 124 (192)
Q Consensus 64 lGIC~G~Q~l~~~~gg~v~~~~~----~~~~~------------~~~~~~~~~~~~~~l~~~~-~--~~~~~~~~H~~~v 124 (192)
||||+|+|+|+.++||++.+... ...++ ....+... +++++..+ + ..+.++.+|+++|
T Consensus 111 LGICrG~Qllnva~GGtl~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~~---~~s~l~~i~~~~~~~~Vns~H~q~V 187 (254)
T PRK11366 111 FAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQVE---EGGLLSALLPECSNFWVNSLHGQGA 187 (254)
T ss_pred EEECHhHHHHHHHhCCeEeecccccccccccccCCccccccccCCceEEEEC---CCCcHHHhcCCCceEEeehHHHHHH
Confidence 99999999999999999998621 10111 12333333 33344333 2 4678999999999
Q ss_pred cccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCCch--HHHHHHHHHHHHHHhhh
Q 029484 125 EKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEG--KTIVRNFIKMIVRKEAA 188 (192)
Q Consensus 125 ~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~--~~l~~~f~~~~~~~~~~ 188 (192)
.. ++++++++|+++|+.|+|++++++++++|+|||||+...+++ .+||++|++.+......
T Consensus 188 ~~---l~~gl~v~A~s~dg~ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~~~~~~ 250 (254)
T PRK11366 188 KV---VSPRLRVEARSPDGLVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITACQHHIAE 250 (254)
T ss_pred hh---cccceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 86 678999999999999999999988867999999999876655 78999999988765443
|
|
| >PLN02889 oxo-acid-lyase/anthranilate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=240.14 Aligned_cols=179 Identities=36% Similarity=0.585 Sum_probs=149.5
Q ss_pred CcHHHHHHhC-CCeEEEEeCCCCCHHHHhc-----cCCCeEEECCCCCCCCCcch---hHHHHHHhCCCCCEEeeeHhHH
Q 029484 1 MTFLKYMGEL-GYHFEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQDSGI---SLQTVLELGPTVPLFGVCMGLQ 71 (192)
Q Consensus 1 ~~l~~~l~~~-g~~~~v~~~~~~~~~~~~~-----~~~dglii~GG~~~~~~~~~---~~~~~~~~~~~~PilGIC~G~Q 71 (192)
+||++.|++. |..+.|+++++.+.+++.. ..+|+|||+||||+|..... ..+.+.+. .++||||||+|||
T Consensus 95 yNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~-~~iPILGICLGhQ 173 (918)
T PLN02889 95 YNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRLLLEC-RDIPILGVCLGHQ 173 (918)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHHHHHh-CCCcEEEEcHHHH
Confidence 4899999998 9999999988777777643 37999999999999964433 34555544 4699999999999
Q ss_pred HHHHHhCCeeeecCCccccccceeeEEcccCCCccccCCCC----cccccccccccccccCCCCCCeEEEEEcCC-----
Q 029484 72 CIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN----PFTAGRYHSLVIEKESFPSDALEVTAWTED----- 142 (192)
Q Consensus 72 ~l~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~----- 142 (192)
+|+.++||+|.+.+. ..||....+... .+.+|.++|. .|.+..+|+..|+.+.++ +.++++|++++
T Consensus 174 ~i~~~~Gg~V~~~~~-~~HG~~s~I~h~---~~~lF~glp~~~~~~f~v~RYHSL~v~~~~lP-~~L~~~A~t~~~~~~~ 248 (918)
T PLN02889 174 ALGYVHGARIVHAPE-PVHGRLSEIEHN---GCRLFDDIPSGRNSGFKVVRYHSLVIDAESLP-KELVPIAWTSSSDTLS 248 (918)
T ss_pred HHHHhcCceEEeCCC-ceeeeeeeEeec---CchhhcCCCcCCCCCceEEeCCCcccccCCCC-CceEEEEEECCCcccc
Confidence 999999999999884 568887777654 4569999986 599999999999755554 78999997754
Q ss_pred ------------------------------------------------CceEEEeeCCCCceEEEeccCCCCCCCchHHH
Q 029484 143 ------------------------------------------------GLIMAARHKKYKHLQGVQFHPESIITTEGKTI 174 (192)
Q Consensus 143 ------------------------------------------------~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l 174 (192)
+.++|++|+.+| +||+|||||...++.|.+|
T Consensus 249 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P-~~GVQfHPESi~t~~G~~l 327 (918)
T PLN02889 249 FLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRP-HYGLQFHPESIATCYGRQI 327 (918)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCCCeeEEEEECCCc-eEEEEeCCccccCchhHHH
Confidence 579999999998 9999999999988999999
Q ss_pred HHHHHHHHHHHh
Q 029484 175 VRNFIKMIVRKE 186 (192)
Q Consensus 175 ~~~f~~~~~~~~ 186 (192)
|+||++.+.+..
T Consensus 328 ~~nF~~~~~~~~ 339 (918)
T PLN02889 328 FKNFREITQDYW 339 (918)
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
|
|
| >PRK07567 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=210.39 Aligned_cols=158 Identities=23% Similarity=0.322 Sum_probs=121.3
Q ss_pred cHHHHHHhCCCe---EEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc----chhHHH----HHH-----hCCCCCEEe
Q 029484 2 TFLKYMGELGYH---FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQT----VLE-----LGPTVPLFG 65 (192)
Q Consensus 2 ~l~~~l~~~g~~---~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~----~~~~~~----~~~-----~~~~~PilG 65 (192)
++.++++..|.. +.+++.+..........+||||||+||++++++. .+|+.. +++ ++.++||||
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLG 98 (242)
T PRK07567 19 EYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLG 98 (242)
T ss_pred hHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 457788888876 6666654332111122379999999999999876 455432 211 378999999
Q ss_pred eeHhHHHHHHHhCCeeeecCCccccccceeeEEc-ccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCc
Q 029484 66 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD-EKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGL 144 (192)
Q Consensus 66 IC~G~Q~l~~~~gg~v~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~ 144 (192)
||+|||+|+.++||+|.+ ..+.+.| +..+..+ .+..+++|.+++..+.++++|++.|.. ++++++++|+++++.
T Consensus 99 IC~G~Qlla~a~GG~V~~-~~g~e~G-~~~v~l~~~g~~~~l~~~~~~~~~~~~~H~d~V~~---lp~~~~vlA~s~~~~ 173 (242)
T PRK07567 99 ACYGVGTLGHHQGGVVDR-TYGEPVG-AVTVSLTDAGRADPLLAGLPDTFTAFVGHKEAVSA---LPPGAVLLATSPTCP 173 (242)
T ss_pred EchhHHHHHHHcCCEEec-CCCCcCc-cEEEEECCccCCChhhcCCCCceEEEeehhhhhhh---CCCCCEEEEeCCCCC
Confidence 999999999999999998 3344444 5555544 344678999999999999999999975 568999999999999
Q ss_pred eEEEeeCCCCceEEEeccCCCC
Q 029484 145 IMAARHKKYKHLQGVQFHPESI 166 (192)
Q Consensus 145 i~ai~~~~~~~~~g~QfHPE~~ 166 (192)
+|+++..+ ++||+|||||++
T Consensus 174 vqa~~~~~--~~~gvQfHPE~~ 193 (242)
T PRK07567 174 VQMFRVGE--NVYATQFHPELD 193 (242)
T ss_pred EEEEEeCC--CEEEEEeCCcCC
Confidence 99999865 499999999996
|
|
| >PRK06490 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=205.84 Aligned_cols=163 Identities=20% Similarity=0.295 Sum_probs=124.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCCC--HHHHhccCCCeEEECCCCCCCCCcchhHHH----HHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSGISLQT----VLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~--~~~~~~~~~dglii~GG~~~~~~~~~~~~~----~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
++.++|++.|.++.++++.... .+++. ++||+||+||++++++..+|+.. +++ ++.++|+||||+|+|+|+
T Consensus 23 ~l~~~l~~~g~~~~v~~~~~~~~~p~~l~--~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla 100 (239)
T PRK06490 23 RVGQLLQERGYPLDIRRPRLGDPLPDTLE--DHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQMLA 100 (239)
T ss_pred HHHHHHHHCCCceEEEeccCCCCCCCccc--ccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHH
Confidence 5789999999999999764221 12233 79999999999999988877543 332 568899999999999999
Q ss_pred HHhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCC
Q 029484 75 EAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYK 154 (192)
Q Consensus 75 ~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~ 154 (192)
+++||+|.+.+.+....++..+..+. ..+++.+++ ..++++|++.+. ++++++++|+++++.+++++..+
T Consensus 101 ~alGG~V~~~~~G~~e~G~~~i~~~~--~~~~~~~~~--~~~~~~H~d~~~----lP~~~~~LA~s~~~~~qa~~~~~-- 170 (239)
T PRK06490 101 RHLGARVAPHPDGRVEIGYYPLRPTE--AGRALMHWP--EMVYHWHREGFD----LPAGAELLATGDDFPNQAFRYGD-- 170 (239)
T ss_pred HHcCCEeecCCCCCCccceEEeEECC--CcccccCCC--CEEEEECCcccc----CCCCCEEEEeCCCCCeEEEEeCC--
Confidence 99999999987554344455665543 223444444 357889999843 45789999999999999999875
Q ss_pred ceEEEeccCCCCCCCchHHHHHHHHHH
Q 029484 155 HLQGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 155 ~~~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
++||+|||||++ ..++++|+..
T Consensus 171 ~v~g~QfHPE~~-----~~~~~~~i~~ 192 (239)
T PRK06490 171 NAWGLQFHPEVT-----RAMMHRWVVR 192 (239)
T ss_pred CEEEEeeCccCC-----HHHHHHHHHh
Confidence 499999999996 5666766653
|
|
| >cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=200.59 Aligned_cols=164 Identities=27% Similarity=0.380 Sum_probs=129.1
Q ss_pred cHHHHHHhCC---CeEEEEeCCCCCHHHHhccCCCeEEECCCCCCC-CCcchhHH----HHHH-hCCCCCEEeeeHhHHH
Q 029484 2 TFLKYMGELG---YHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-QDSGISLQ----TVLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 2 ~l~~~l~~~g---~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~-~~~~~~~~----~~~~-~~~~~PilGIC~G~Q~ 72 (192)
++.++++++| ++++++++..... .....++||||++||+.+. .+...|.+ .++. +++++|+||||+|+|+
T Consensus 15 ~~~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~ 93 (188)
T cd01741 15 LFEDLLREAGAETIEIDVVDVYAGEL-LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQL 93 (188)
T ss_pred hHHHHHHhcCCCCceEEEEecCCCCC-CCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHH
Confidence 5788999999 7999988754332 1122389999999999988 44444433 3333 5678999999999999
Q ss_pred HHHHhCCeeeecCCccccccceeeEEcc-cCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeC
Q 029484 73 IGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHK 151 (192)
Q Consensus 73 l~~~~gg~v~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~ 151 (192)
|+.++||++.+...+. ..++..+..+. +..++++++++..+.++++|++.|.. ++++++++|+++++.+++++.+
T Consensus 94 l~~~lGG~v~~~~~~~-~~g~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~~~v~~---lp~~~~~la~~~~~~v~~~~~~ 169 (188)
T cd01741 94 LARALGGKVGRNPKGW-EIGWFPVTLTEAGKADPLFAGLPDEFPVFHWHGDTVVE---LPPGAVLLASSEACPNQAFRYG 169 (188)
T ss_pred HHHHhCCEEecCCCcc-eeEEEEEEeccccccCchhhcCCCcceEEEEeccChhh---CCCCCEEeecCCCCCcceEEec
Confidence 9999999999987543 44455565543 33567888888899999999999986 5688999999999999999987
Q ss_pred CCCceEEEeccCCCCCCCchHHHHHHHH
Q 029484 152 KYKHLQGVQFHPESIITTEGKTIVRNFI 179 (192)
Q Consensus 152 ~~~~~~g~QfHPE~~~~~~~~~l~~~f~ 179 (192)
+ +++|+||||| ..++++|+
T Consensus 170 ~--~~~g~QfHPE-------~~~~~~f~ 188 (188)
T cd01741 170 D--RALGLQFHPE-------ERLLRNFL 188 (188)
T ss_pred C--CEEEEccCch-------HHHHhhhC
Confidence 3 5999999999 68888874
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine |
| >PRK07053 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=204.43 Aligned_cols=165 Identities=20% Similarity=0.276 Sum_probs=125.8
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc--hhHH----HHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQ----TVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~--~~~~----~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
++.++|++.|.++.+++.+..+.......++|+|||+|||.++++.. +|+. .+++ ++.++|+||||+|+|+|+
T Consensus 18 ~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla 97 (234)
T PRK07053 18 SFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIA 97 (234)
T ss_pred HHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHH
Confidence 57899999999999998753322111223799999999999987753 4433 3333 567899999999999999
Q ss_pred HHhCCeeeecCCccccccceeeEEc-ccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCC
Q 029484 75 EAFGGKIVRSPLGVMHGKSSLVYYD-EKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKY 153 (192)
Q Consensus 75 ~~~gg~v~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~ 153 (192)
.++||+|.+.. ..+.| +.++..+ .+..+++ .+++..+.+++||++.+. ++++++++|+|+.+.+|+++..+
T Consensus 98 ~alGg~V~~~~-~~e~G-~~~i~~t~~g~~~pl-~~~~~~~~~~~~H~d~~~----lP~ga~~La~s~~~~~qaf~~g~- 169 (234)
T PRK07053 98 RALGARVYPGG-QKEIG-WAPLTLTDAGRASPL-RHLGAGTPVLHWHGDTFD----LPEGATLLASTPACRHQAFAWGN- 169 (234)
T ss_pred HHcCCcEecCC-CCeEe-EEEEEEeccccCChh-hcCCCcceEEEEeCCEEe----cCCCCEEEEcCCCCCeeEEEeCC-
Confidence 99999999864 44344 5555544 3445555 467778899999999985 45899999999999999999864
Q ss_pred CceEEEeccCCCCCCCchHHHHHHHHH
Q 029484 154 KHLQGVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 154 ~~~~g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
++||+|||||++ ..++..|+.
T Consensus 170 -~~~g~QfHpE~~-----~~~~~~w~~ 190 (234)
T PRK07053 170 -HVLALQFHPEAR-----EDRFEAWLI 190 (234)
T ss_pred -CEEEEeeCccCC-----HHHHHHHHH
Confidence 599999999997 556666654
|
|
| >PRK05665 amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=203.23 Aligned_cols=155 Identities=19% Similarity=0.167 Sum_probs=118.4
Q ss_pred HHHHHHhCCC--eEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHH----HH-hCCCCCEEeeeHhHHHHHH
Q 029484 3 FLKYMGELGY--HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTV----LE-LGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 3 l~~~l~~~g~--~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~----~~-~~~~~PilGIC~G~Q~l~~ 75 (192)
+.+++...+. ++.++......... ...+|||+||+||+.++++..+|+..+ ++ +++++|+||||+|+|+|+.
T Consensus 28 ~~~ll~~~~~~~~~~~~~~~~~~~p~-~~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~ 106 (240)
T PRK05665 28 FEQLFARQPIAAEFVVYNVVQGDYPA-DDEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLAL 106 (240)
T ss_pred HHHHHHhCCCCceEEEEeccCCCCCC-CcccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHH
Confidence 3455666664 45555433221111 223799999999999999888886443 32 4678999999999999999
Q ss_pred HhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCc
Q 029484 76 AFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKH 155 (192)
Q Consensus 76 ~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~ 155 (192)
++||+|.+.+.+.+.|. ..+.... ..+++..++..+.++.+|+|.|.. ++++++++|+|+.+.+|+++..+ +
T Consensus 107 AlGG~V~~~~~G~e~G~-~~~~~~~--~~~~~~~~~~~~~~~~~H~D~V~~---LP~ga~~La~s~~~~~q~~~~~~--~ 178 (240)
T PRK05665 107 LLGGKAERASQGWGVGI-HRYQLAA--HAPWMSPAVTELTLLISHQDQVTA---LPEGATVIASSDFCPFAAYHIGD--Q 178 (240)
T ss_pred HhCCEEEeCCCCcccce-EEEEecC--CCccccCCCCceEEEEEcCCeeee---CCCCcEEEEeCCCCcEEEEEeCC--C
Confidence 99999999876544443 3344332 456888888899999999999976 66899999999999999999765 4
Q ss_pred eEEEeccCCCC
Q 029484 156 LQGVQFHPESI 166 (192)
Q Consensus 156 ~~g~QfHPE~~ 166 (192)
+||+|||||++
T Consensus 179 ~~g~QfHPE~~ 189 (240)
T PRK05665 179 VLCFQGHPEFV 189 (240)
T ss_pred EEEEecCCcCc
Confidence 99999999996
|
|
| >PRK08250 glutamine amidotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=202.06 Aligned_cols=165 Identities=23% Similarity=0.284 Sum_probs=126.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC---cchhH------HHHHH-hCCCCCEEeeeHhHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD---SGISL------QTVLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~---~~~~~------~~~~~-~~~~~PilGIC~G~Q~ 72 (192)
+..++++.|+++.++..+..........++||+||+||+.++.+ ..+|+ +.+++ ++.++||||||+|+|+
T Consensus 17 ~~~~~~~~g~~~~~~~~~~g~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Ql 96 (235)
T PRK08250 17 YLKWAENRGYDISYSRVYAGEALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQL 96 (235)
T ss_pred HHHHHHHCCCeEEEEEccCCCCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHH
Confidence 56788999999999876532211101237999999999998653 23333 33443 4689999999999999
Q ss_pred HHHHhCCeeeecCCccccccceeeE-EcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeC
Q 029484 73 IGEAFGGKIVRSPLGVMHGKSSLVY-YDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHK 151 (192)
Q Consensus 73 l~~~~gg~v~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~ 151 (192)
|+.++||+|.+.+. .+.|.. ++. +..+..+++++++++++.+++||++.+. ++++++++|+|+.+.+|+++..
T Consensus 97 la~alGg~V~~~~~-~e~G~~-~v~lt~~g~~d~l~~~~~~~~~v~~~H~d~~~----lP~~a~~LA~s~~~~~qa~~~~ 170 (235)
T PRK08250 97 IGEALGAKYEHSPE-KEIGYF-PITLTEAGLKDPLLSHFGSTLTVGHWHNDMPG----LTDQAKVLATSEGCPRQIVQYS 170 (235)
T ss_pred HHHHhCceeccCCC-CceeEE-EEEEccccccCchhhcCCCCcEEEEEecceec----CCCCCEEEECCCCCCceEEEeC
Confidence 99999999998874 445544 554 4455577899999999999999999764 4589999999999999999987
Q ss_pred CCCceEEEeccCCCCCCCchHHHHHHHHH
Q 029484 152 KYKHLQGVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 152 ~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
+ ++||+|||||.+ ..+++.++.
T Consensus 171 ~--~~~g~QfHPE~~-----~~~~~~~~~ 192 (235)
T PRK08250 171 N--LVYGFQCHMEFT-----VEAVELLIA 192 (235)
T ss_pred C--CEEEEeecCcCC-----HHHHHHHHH
Confidence 5 499999999996 455555554
|
|
| >cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=195.68 Aligned_cols=145 Identities=23% Similarity=0.377 Sum_probs=114.8
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhc--cCCCeEEECCCCCCCCC--------------cc--hh-HHHHHH-hCCCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQD--------------SG--IS-LQTVLE-LGPTV 61 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglii~GG~~~~~~--------------~~--~~-~~~~~~-~~~~~ 61 (192)
+++++++.+|+.+.+++.. .+.+++.. .++||||++||++...+ .. .+ .+.++. ++.++
T Consensus 23 ~~~~~l~~~G~~~~iv~~~-~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 101 (189)
T cd01745 23 YYVDAVRKAGGLPVLLPPV-DDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGK 101 (189)
T ss_pred HHHHHHHHCCCEEEEeCCC-CChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCC
Confidence 6789999999999999875 33333321 37999999999876422 00 01 223333 46789
Q ss_pred CEEeeeHhHHHHHHHhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcC
Q 029484 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE 141 (192)
Q Consensus 62 PilGIC~G~Q~l~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 141 (192)
||||||+|+|+|+.++||++.+.. .++.+|++.|.. ++++++++|+++
T Consensus 102 PilgiC~G~Q~l~~~~Gg~v~~~~-----------------------------~v~~~H~~~v~~---~~~~~~vla~~~ 149 (189)
T cd01745 102 PILGICRGMQLLNVALGGTLYQDI-----------------------------RVNSLHHQAIKR---LADGLRVEARAP 149 (189)
T ss_pred CEEEEcchHHHHHHHhCCeEEcCC-----------------------------ceechHHHHHhh---cCCCCEEEEECC
Confidence 999999999999999999997654 456789999975 568899999999
Q ss_pred CCceEEEeeCCCCceEEEeccCCCCCC--CchHHHHHHHH
Q 029484 142 DGLIMAARHKKYKHLQGVQFHPESIIT--TEGKTIVRNFI 179 (192)
Q Consensus 142 ~~~i~ai~~~~~~~~~g~QfHPE~~~~--~~~~~l~~~f~ 179 (192)
++.++|++++++++++|+|||||+..+ +++.+||++|+
T Consensus 150 d~~vea~~~~~~~~~~gvQfHPE~~~~~~~~~~~if~~f~ 189 (189)
T cd01745 150 DGVIEAIESPDRPFVLGVQWHPEWLADTDPDSLKLFEAFV 189 (189)
T ss_pred CCcEEEEEeCCCCeEEEEecCCCcCcccCchHhHHHHHhC
Confidence 999999999873459999999999987 69999999984
|
This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine |
| >COG2071 Predicted glutamine amidotransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=193.59 Aligned_cols=177 Identities=22% Similarity=0.323 Sum_probs=128.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhc--cCCCeEEECCCCCCCC--Cc---------------chh-HHHHH-HhCCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQ--DS---------------GIS-LQTVL-ELGPT 60 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglii~GG~~~~~--~~---------------~~~-~~~~~-~~~~~ 60 (192)
++++....+|.-...+|.- .+.+.+.. ...||||++|| .+.. -+ +.+ +..++ +++++
T Consensus 30 ~yv~ai~~aGg~pillP~~-~d~~~~~~~l~~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~ 107 (243)
T COG2071 30 DYVDAIIKAGGIPILLPAL-EDPEDARQYLDLIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERG 107 (243)
T ss_pred HHHHHHHHcCCceEEecCC-CCHHHHHHHHhhccEEEecCC-CcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcC
Confidence 3566777788888888842 22333322 26899999999 4431 00 011 23444 37899
Q ss_pred CCEEeeeHhHHHHHHHhCCeeeecCCcc-----------ccccceeeEEcccCCCccccCCCCc-ccccccccccccccC
Q 029484 61 VPLFGVCMGLQCIGEAFGGKIVRSPLGV-----------MHGKSSLVYYDEKGEDGLLAGLSNP-FTAGRYHSLVIEKES 128 (192)
Q Consensus 61 ~PilGIC~G~Q~l~~~~gg~v~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~H~~~v~~~~ 128 (192)
+||||||+|+|+|+.++||++.+.-... ..-..+.+.+.. .+.|.+-+++. +.+++.|+++|.+
T Consensus 108 iPILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~V~i~~--~s~La~i~g~~~~~VNS~HhQaIk~-- 183 (243)
T COG2071 108 IPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEP--GSKLAKILGESEFMVNSFHHQAIKK-- 183 (243)
T ss_pred CCEEEEccchHHHHHHhcCeeehhhhcccccccccCCCCcccceeEEEecC--CccHHHhcCccceeecchHHHHHHH--
Confidence 9999999999999999999999864210 011122233332 33344444445 8999999999988
Q ss_pred CCCCCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCC--chHHHHHHHHHHHHHH
Q 029484 129 FPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITT--EGKTIVRNFIKMIVRK 185 (192)
Q Consensus 129 l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~--~~~~l~~~f~~~~~~~ 185 (192)
+++++++.|.++|+.|+|+++++..+++|+|||||+.... ..+.||+.|++.+...
T Consensus 184 -La~~L~V~A~a~DG~VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 184 -LAPGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVNACKKH 241 (243)
T ss_pred -hCCCcEEEEECCCCcEEEEEecCCceEEEEecChhhhccCChHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999877899999999998765 5789999999988765
|
|
| >COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=188.01 Aligned_cols=164 Identities=27% Similarity=0.378 Sum_probs=125.8
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch------hHHHHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~------~~~~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
|+.++++.+|+++.+... .+++. +.|+||++| .|...+... +.+.+++ ...++|+||||+|||+|.
T Consensus 16 Sv~~Aler~G~~~~vs~d----~~~i~--~AD~liLPG-VGaf~~am~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLf 88 (204)
T COG0118 16 SVKKALERLGAEVVVSRD----PEEIL--KADKLILPG-VGAFGAAMANLRERGLIEAIKEAVESGKPFLGICLGMQLLF 88 (204)
T ss_pred HHHHHHHHcCCeeEEecC----HHHHh--hCCEEEecC-CCCHHHHHHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhh
Confidence 788999999999998863 56666 789999885 566554433 2334443 567799999999999999
Q ss_pred H------------HhCCeeeecCC---ccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEE
Q 029484 75 E------------AFGGKIVRSPL---GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAW 139 (192)
Q Consensus 75 ~------------~~gg~v~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~ 139 (192)
+ .+.|+|.+.+. ..+|++|+.+... ..++||.++++.-.+++.|+|++.. .+.-.++++
T Consensus 89 e~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN~l~~~--~~~~l~~gi~~~~~~YFVHSY~~~~----~~~~~v~~~ 162 (204)
T COG0118 89 ERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQVEFV--RGHPLFKGIPDGAYFYFVHSYYVPP----GNPETVVAT 162 (204)
T ss_pred hcccccCCCCCcceecceEEEcCCCCCCCCccccceeecc--CCChhhcCCCCCCEEEEEEEEeecC----CCCceEEEe
Confidence 9 45678887653 4679999998887 4789999998767889999999873 234456676
Q ss_pred cCCC-c-eEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHH
Q 029484 140 TEDG-L-IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182 (192)
Q Consensus 140 s~~~-~-i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~ 182 (192)
++.+ . .++++ ++ |++|+|||||++ +..|.++++||++..
T Consensus 163 ~~YG~~f~AaV~-k~--N~~g~QFHPEKS-g~~Gl~lL~NFl~~~ 203 (204)
T COG0118 163 TDYGEPFPAAVA-KD--NVFGTQFHPEKS-GKAGLKLLKNFLEWI 203 (204)
T ss_pred ccCCCeeEEEEE-eC--CEEEEecCcccc-hHHHHHHHHHHHhhc
Confidence 6655 3 55554 43 599999999997 889999999999864
|
|
| >TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-29 Score=221.46 Aligned_cols=178 Identities=27% Similarity=0.452 Sum_probs=134.9
Q ss_pred CcHHHHHHhC---CCeEEEEeCCCCCHHHHh-ccCCCeEEECCCCCCCCCcch--hHHHHHHh--CCCCCEEeeeHhHHH
Q 029484 1 MTFLKYMGEL---GYHFEVYRNDELTVEELK-RKNPRGVLISPGPGAPQDSGI--SLQTVLEL--GPTVPLFGVCMGLQC 72 (192)
Q Consensus 1 ~~l~~~l~~~---g~~~~v~~~~~~~~~~~~-~~~~dglii~GG~~~~~~~~~--~~~~~~~~--~~~~PilGIC~G~Q~ 72 (192)
+||++.|++. ++++.+++++....+.+. ..++|+|||+||||++.+... +.+.+.+. ..++||||||+|||+
T Consensus 19 ~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~Ql 98 (742)
T TIGR01823 19 YNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNAQDMGIISELWELANLDEVPVLGICLGFQS 98 (742)
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccchhhhHHHHHHHHhcccCCCcEEEEchhhHH
Confidence 3789999986 367888887644433322 237999999999999975443 33333332 246999999999999
Q ss_pred HHHHhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCC--eEEEEEcCC-CceEEEe
Q 029484 73 IGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDA--LEVTAWTED-GLIMAAR 149 (192)
Q Consensus 73 l~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~--~~~~a~s~~-~~i~ai~ 149 (192)
|+.++||++.+.+. ..+|....+... .+.+|.+++. +.++.+|++.+..+ .++. +.+++.+++ +.++|++
T Consensus 99 La~a~GG~v~~~~~-~~hG~~~~v~~~---~~~lf~gl~~-~~v~~~Hs~~v~~~--~~~~l~~~~~a~~~~~~~i~ai~ 171 (742)
T TIGR01823 99 LCLAQGADISRLPT-PKHGQVYEMHTN---DAAIFCGLFS-VKSTRYHSLYANPE--GIDTLLPLCLTEDEEGIILMSAQ 171 (742)
T ss_pred HHhhcCCEEEECCC-CCcCeEEEEEEC---CccccCCCCC-CceeEEEEEEccCC--CCCcceEEEEEEcCCCCeEEEEE
Confidence 99999999999874 457766655543 4568988875 88999999988642 1233 456666654 4799999
Q ss_pred eCCCCceEEEeccCCCCCCCc-hHHHHHHHHHHHHHHh
Q 029484 150 HKKYKHLQGVQFHPESIITTE-GKTIVRNFIKMIVRKE 186 (192)
Q Consensus 150 ~~~~~~~~g~QfHPE~~~~~~-~~~l~~~f~~~~~~~~ 186 (192)
++++| +||+|||||+..++. +.+||+||++++.+.+
T Consensus 172 h~~~p-i~GVQFHPE~~~s~~g~~~Lf~nFl~~~~~~~ 208 (742)
T TIGR01823 172 TKKKP-WFGVQYHPESCCSELGSGKLVSNFLKLAFINN 208 (742)
T ss_pred EcCCc-eEEEEeCcccCCCCccHHHHHHHHHHHHHHhh
Confidence 99988 999999999987776 4999999999988765
|
This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate. |
| >cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS) | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-29 Score=190.85 Aligned_cols=162 Identities=26% Similarity=0.354 Sum_probs=120.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc------chhHHHHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~------~~~~~~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
+++++|+.+|+++++++. .+++. ++|+||++|| +.+.+. ....+.+++ +++++||||||+|+|+|+
T Consensus 13 ~~~~~l~~~g~~v~v~~~----~~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~ 85 (198)
T cd01748 13 SVANALERLGAEVIITSD----PEEIL--SADKLILPGV-GAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQLLF 85 (198)
T ss_pred HHHHHHHHCCCeEEEEcC----hHHhc--cCCEEEECCC-CcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhc
Confidence 578999999999999984 23444 7999999765 443322 112344444 567999999999999999
Q ss_pred HH------------hCCeeeecCCc----cccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEE
Q 029484 75 EA------------FGGKIVRSPLG----VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTA 138 (192)
Q Consensus 75 ~~------------~gg~v~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 138 (192)
.+ ++|++.+.+.. ..+.++..+... .++++|++++..+.++++|++.+.. + +.+.++|
T Consensus 86 ~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~~v~~~--~~~~lf~~l~~~~~v~~~Hs~~v~~---~-~~~~~la 159 (198)
T cd01748 86 ESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEIT--KESPLFKGIPDGSYFYFVHSYYAPP---D-DPDYILA 159 (198)
T ss_pred cccccCCCCCCCCCcceEEEECCCCCCceEEEeccceEEEC--CCChhhhCCCCCCeEEEEeEEEEec---C-CcceEEE
Confidence 98 78999886531 123345555443 3677999999999999999999974 3 4577889
Q ss_pred EcCCCc-eEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHH
Q 029484 139 WTEDGL-IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179 (192)
Q Consensus 139 ~s~~~~-i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~ 179 (192)
+++++. .+++. .+.+ +||+|||||++ .+.+.++++||+
T Consensus 160 ~s~~~~~~~~~~-~~~~-i~GvQFHPE~~-~~~g~~~~~nf~ 198 (198)
T cd01748 160 TTDYGGKFPAAV-EKDN-IFGTQFHPEKS-GKAGLKLLKNFL 198 (198)
T ss_pred EecCCCeEEEEE-EcCC-EEEEECCCccc-cHhHHHHHHhhC
Confidence 887654 55544 3444 99999999998 679999999995
|
Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=188.08 Aligned_cols=160 Identities=24% Similarity=0.350 Sum_probs=117.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchh------HHHHHHhCCCCCEEeeeHhHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS------LQTVLELGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~------~~~~~~~~~~~PilGIC~G~Q~l~~ 75 (192)
|+.++|+..|+++++++. .+++. ++|+||+ +|+|.+.+.... .+.+++ .++||||||+|+|+|++
T Consensus 15 s~~~~l~~~g~~~~~v~~----~~~~~--~~d~iIl-PG~G~~~~~~~~l~~~~l~~~i~~--~~~PilGIClG~Qll~~ 85 (196)
T PRK13170 15 SVKFAIERLGYEPVVSRD----PDVIL--AADKLFL-PGVGTAQAAMDQLRERELIDLIKA--CTQPVLGICLGMQLLGE 85 (196)
T ss_pred HHHHHHHHCCCeEEEECC----HHHhC--CCCEEEE-CCCCchHHHHHHHHHcChHHHHHH--cCCCEEEECHHHHHHhh
Confidence 788999999999999974 35555 6899998 556766554332 333333 47999999999999999
Q ss_pred HhC------------CeeeecC---CccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc
Q 029484 76 AFG------------GKIVRSP---LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT 140 (192)
Q Consensus 76 ~~g------------g~v~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s 140 (192)
+++ +++.+.. ...++.+|+.+.... ++++++++++.+.++++|++.+. .+..++|++
T Consensus 86 ~~~~~~~~~~lg~~~g~v~~~~~~~~~~p~~G~~~v~~~~--~~~l~~~l~~~~~v~~~Hs~~lp------~~~~~la~s 157 (196)
T PRK13170 86 RSEESGGVDCLGIIDGPVKKMTDFGLPLPHMGWNQVTPQA--GHPLFQGIEDGSYFYFVHSYAMP------VNEYTIAQC 157 (196)
T ss_pred hcccCCCCCCcccccEEEEECCCCCCCCCccccceeEeCC--CChhhhCCCcCCEEEEECeeecC------CCCcEEEEe
Confidence 973 3555532 123456677776543 56799999999999999998764 235678888
Q ss_pred CCCceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHH
Q 029484 141 EDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 141 ~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
+++...+....+.+ +||+|||||++ .+.|.+|++||++
T Consensus 158 ~~~~~~~~~~~~~~-i~G~QFHPE~~-~~~G~~~l~nfl~ 195 (196)
T PRK13170 158 NYGEPFSAAIQKDN-FFGVQFHPERS-GAAGAQLLKNFLE 195 (196)
T ss_pred cCCCeEEEEEEcCC-EEEEECCCCCc-ccccHHHHHHHhh
Confidence 76543333333444 99999999998 6899999999985
|
|
| >PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=190.81 Aligned_cols=165 Identities=24% Similarity=0.318 Sum_probs=122.7
Q ss_pred cHHHHHHhCCCe--EEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch-----hHHH-HHH-hCCCCCEEeeeHhHHH
Q 029484 2 TFLKYMGELGYH--FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-----SLQT-VLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 2 ~l~~~l~~~g~~--~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~-----~~~~-~~~-~~~~~PilGIC~G~Q~ 72 (192)
+++++|+.+|.+ +.+++ +.+++. ++|+|||+|+..+..+... +... ++. .+.++|+||||+|+|+
T Consensus 16 s~~~al~~~g~~~~v~~~~----~~~~l~--~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~ 89 (209)
T PRK13146 16 SAAKALERAGAGADVVVTA----DPDAVA--AADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQL 89 (209)
T ss_pred HHHHHHHHcCCCccEEEEC----CHHHhc--CCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHH
Confidence 678999999994 44443 356665 8999999986443222111 1222 233 3588999999999999
Q ss_pred HHHH------------hCCeeeec-CC----ccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeE
Q 029484 73 IGEA------------FGGKIVRS-PL----GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALE 135 (192)
Q Consensus 73 l~~~------------~gg~v~~~-~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~ 135 (192)
|+.+ ++|++.+. +. ..++.+|+.+.... ++++|+++++.+.++++|++.+.. + ++..
T Consensus 90 l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G~~~v~~~~--~~~lf~~~~~~~~v~~~Hs~~v~~---~-~~~~ 163 (209)
T PRK13146 90 LFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMGWNTVDQTR--DHPLFAGIPDGARFYFVHSYYAQP---A-NPAD 163 (209)
T ss_pred HhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccChHHeeeCC--CChhccCCCCCCEEEEEeEEEEEc---C-CCCc
Confidence 9999 89999886 21 22356677776543 678999999999999999999974 3 3568
Q ss_pred EEEEcCCC-ceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHH
Q 029484 136 VTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 136 ~~a~s~~~-~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
++|+++++ .++++... . ++||+|||||++ .+.+..|++||++.
T Consensus 164 ~la~s~~~~~~~a~~~~-~-~i~GvQFHPE~s-~~~G~~ll~nfl~~ 207 (209)
T PRK13146 164 VVAWTDYGGPFTAAVAR-D-NLFATQFHPEKS-QDAGLALLRNFLAW 207 (209)
T ss_pred EEEEEcCCCEEEEEEec-C-CEEEEEcCCccc-HHHHHHHHHHHHhh
Confidence 88988765 47777654 3 499999999997 67999999999875
|
|
| >CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=189.27 Aligned_cols=164 Identities=18% Similarity=0.207 Sum_probs=120.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch------hHHHHH-HhCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVL-ELGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~------~~~~~~-~~~~~~PilGIC~G~Q~l~ 74 (192)
++.++++.+|+++.+++. .+++. ++|+||++ |++++..... +...++ .++.++|+||||+|||+|+
T Consensus 16 sl~~al~~~g~~v~vv~~----~~~l~--~~d~iIlP-G~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~ 88 (210)
T CHL00188 16 SVSRAIQQAGQQPCIINS----ESELA--QVHALVLP-GVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLF 88 (210)
T ss_pred HHHHHHHHcCCcEEEEcC----HHHhh--hCCEEEEC-CCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHh
Confidence 688999999999999964 24554 68998865 5577543211 223333 3567999999999999999
Q ss_pred HH-----------hCCeeeecCC----ccccccceeeEEcccC----CCccccCCCCcccccccccccccccCCCCCCeE
Q 029484 75 EA-----------FGGKIVRSPL----GVMHGKSSLVYYDEKG----EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALE 135 (192)
Q Consensus 75 ~~-----------~gg~v~~~~~----~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~ 135 (192)
+. ++|++.+... ..++.+|+.+...... ++++|+++++.+.++++|++.+.+ +. ..
T Consensus 89 ~~~~~~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~~~v~~~HS~~v~p----~~-~~ 163 (210)
T CHL00188 89 ETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLNPWAYFVHSYGVMP----KS-QA 163 (210)
T ss_pred hccccCCcCCccceeEEEEECCCCCCCccCccCCccceecCCcccccCChhhcCCCCCCEEEEeCccEecC----CC-Cc
Confidence 85 5677777631 2356678888765431 146999999999999999998853 22 23
Q ss_pred EEEEc----CCCceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHH
Q 029484 136 VTAWT----EDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 136 ~~a~s----~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
.++.+ .++.+++++.. +++|+|||||++ ++.|..|++||+.+
T Consensus 164 ~l~~t~~~~~~~~v~a~~~~---~i~GvQFHPE~s-~~~G~~il~nfl~~ 209 (210)
T CHL00188 164 CATTTTFYGKQQMVAAIEYD---NIFAMQFHPEKS-GEFGLWLLREFMKK 209 (210)
T ss_pred eEEEEEecCCcceEEEEecC---CEEEEecCCccc-cHhHHHHHHHHHhh
Confidence 33333 25569999853 499999999998 88999999999875
|
|
| >PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-28 Score=187.78 Aligned_cols=166 Identities=30% Similarity=0.396 Sum_probs=125.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc------hhHHHHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~------~~~~~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
+++++|+..|+++.+++. .+++. ++|+||++|| +.+.+.. ...+.+++ ++.++|+||||+|+|+|+
T Consensus 14 ~i~~~l~~~G~~v~~~~~----~~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~ 86 (205)
T PRK13141 14 SVEKALERLGAEAVITSD----PEEIL--AADGVILPGV-GAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGMQLLF 86 (205)
T ss_pred HHHHHHHHCCCeEEEECC----HHHhc--cCCEEEECCC-CchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhh
Confidence 588999999999999863 34555 7999999875 3322211 12344444 468899999999999999
Q ss_pred HH------------hCCeeeecCCc----cccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEE
Q 029484 75 EA------------FGGKIVRSPLG----VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTA 138 (192)
Q Consensus 75 ~~------------~gg~v~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a 138 (192)
.+ +++++.+.+.+ ..+.++..+..+. ++++++.++..+.++.+|++.+. +++++.++|
T Consensus 87 ~~~~~~~~~~~lg~l~g~v~~~~~~~~~~~~~~g~~~i~~~~--~~~l~~~l~~~~~v~~~Hs~~v~----~~~~~~v~a 160 (205)
T PRK13141 87 ESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLELKK--ESPLLKGIPDGAYVYFVHSYYAD----PCDEEYVAA 160 (205)
T ss_pred hccccCCCCCccceEEEEEEEcCCCCCCcccEecCccceeCC--CChhhhCCCCCCEEEEECeeEec----cCCcCeEEE
Confidence 97 67888876521 2244555555543 67899999888889999999985 346788899
Q ss_pred EcCCC-ceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 139 WTEDG-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 139 ~s~~~-~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
+++++ .++++...+ ++||+|||||+. .+.+.+||++|++.+.
T Consensus 161 ~~~~~~~~~a~~~~~--~i~GvQfHPE~~-~~~g~~l~~~fl~~~~ 203 (205)
T PRK13141 161 TTDYGVEFPAAVGKD--NVFGAQFHPEKS-GDVGLKILKNFVEMVE 203 (205)
T ss_pred EEeCCcEEEEEEecC--CEEEEeCCCccc-hHHHHHHHHHHHHHhh
Confidence 88766 688886543 499999999996 5789999999998763
|
|
| >PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-28 Score=186.11 Aligned_cols=167 Identities=24% Similarity=0.307 Sum_probs=120.2
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc------hhHHHHHH-hCCCCCEEeeeHhHHHH
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVPLFGVCMGLQCI 73 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~------~~~~~~~~-~~~~~PilGIC~G~Q~l 73 (192)
+|+.+.++..+.++..+.. .+++. ++|+||++|+ +++.+.. .+...+++ +.+++|+||||+|||+|
T Consensus 13 ~s~~~al~~~~~~~~~~~~----~~~l~--~~d~iIlPG~-g~~~~~~~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l 85 (210)
T PRK14004 13 HSCLKAVSLYTKDFVFTSD----PETIE--NSKALILPGD-GHFDKAMENLNSTGLRSTIDKHVESGKPLFGICIGFQIL 85 (210)
T ss_pred HHHHHHHHHcCCeEEEECC----HHHhc--cCCEEEECCC-CchHHHHHHHHHcCcHHHHHHHHHcCCCEEEECHhHHHH
Confidence 3678899999998887753 45565 8899997776 5543322 12333433 67899999999999999
Q ss_pred HHHhC------------------CeeeecC---CccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCC
Q 029484 74 GEAFG------------------GKIVRSP---LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSD 132 (192)
Q Consensus 74 ~~~~g------------------g~v~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~ 132 (192)
+++.+ +++.+.. ...++.+|+.+......++++|+++++.+.++++|+|.... ..
T Consensus 86 ~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~~v~~~~~~~~~lf~~l~~~~~v~~~HS~~~~~----~~ 161 (210)
T PRK14004 86 FESSEETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRLQIRRKDKSKLLKGIGDQSFFYFIHSYRPTG----AE 161 (210)
T ss_pred HHhcccccCCCcCcccCCcceeEEEEEEcCCCCCcCCccCcccceeccCCCCccccCCCCCCEEEEeceeecCC----CC
Confidence 99753 5656543 23468888888765445678999999999999999996532 23
Q ss_pred CeEEEEEcCC-Cc-eEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHH
Q 029484 133 ALEVTAWTED-GL-IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 133 ~~~~~a~s~~-~~-i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
...+++.++. +. ++++.. +. ++||+|||||++. +.|..|++||++.
T Consensus 162 ~l~~sa~~~~~g~~~~a~~~-~~-~i~GvQFHPE~s~-~~G~~iL~nfl~~ 209 (210)
T PRK14004 162 GNAITGLCDYYQEKFPAVVE-KE-NIFGTQFHPEKSH-THGLKLLENFIEF 209 (210)
T ss_pred cceEEEeeeECCEEEEEEEe-cC-CEEEEeCCcccCc-hhHHHHHHHHHhh
Confidence 3455565544 33 445553 33 4999999999985 7999999999875
|
|
| >PRK13525 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-28 Score=183.46 Aligned_cols=157 Identities=24% Similarity=0.403 Sum_probs=115.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc----hhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~----~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
..++++..|+++..++. .+++. ++||||++||+++..+.. .+.+.+++ .++++|+||||+|+|+|+.++
T Consensus 16 ~~~~l~~~g~~~~~~~~----~~~l~--~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~ 89 (189)
T PRK13525 16 HLAALEALGAEAVEVRR----PEDLD--EIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKEI 89 (189)
T ss_pred HHHHHHHCCCEEEEeCC----hhHhc--cCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhhc
Confidence 35678899999988863 34444 799999999987654322 12234444 568899999999999999999
Q ss_pred CC-----------eeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceE
Q 029484 78 GG-----------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIM 146 (192)
Q Consensus 78 gg-----------~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ 146 (192)
|+ ++.+..++...+.. . .+.++.++++.+.++++|+|.|.. ++++++++|++++ .++
T Consensus 90 gg~~~~~lg~~~~~v~~~~~g~~~g~~-----~---~~~~~~~~~~~~~~~~~H~d~v~~---lp~~~~vlA~~~~-~~~ 157 (189)
T PRK13525 90 EGYEQEHLGLLDITVRRNAFGRQVDSF-----E---AELDIKGLGEPFPAVFIRAPYIEE---VGPGVEVLATVGG-RIV 157 (189)
T ss_pred ccCCCCceeeEEEEEEEccCCCceeeE-----E---ecccccCCCCCeEEEEEeCceeec---cCCCcEEEEEcCC-EEE
Confidence 98 45554433322211 1 234667777789999999999976 5689999999875 445
Q ss_pred EEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 147 AARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 147 ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
+++.. ++||+|||||++ ...+||++|++.++
T Consensus 158 ~~~~~---~~~g~QfHPE~~---~~~~~~~~f~~~~~ 188 (189)
T PRK13525 158 AVRQG---NILATSFHPELT---DDTRVHRYFLEMVK 188 (189)
T ss_pred EEEeC---CEEEEEeCCccC---CCchHHHHHHHHhh
Confidence 77643 499999999997 34799999998875
|
|
| >PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=184.06 Aligned_cols=162 Identities=21% Similarity=0.333 Sum_probs=118.7
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchh------HHHHHH--hCCCCCEEeeeHhHHH
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS------LQTVLE--LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~------~~~~~~--~~~~~PilGIC~G~Q~ 72 (192)
+|+.+.++..|+++.+++. .+++. ++|+||+ +|++++.+...+ ...+.+ ++.++||||||+|||+
T Consensus 13 ~~v~~~l~~~g~~~~~~~~----~~~l~--~~d~lil-PG~g~~~~~~~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~ 85 (201)
T PRK13152 13 NSVAKAFEKIGAINFIAKN----PKDLQ--KADKLLL-PGVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQL 85 (201)
T ss_pred HHHHHHHHHCCCeEEEECC----HHHHc--CCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHHHHhCCCcEEEECHhHHH
Confidence 4788999999999888764 34554 7999999 455776544322 233433 4689999999999999
Q ss_pred HHHH------------hCCeeeecCC----ccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEE
Q 029484 73 IGEA------------FGGKIVRSPL----GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEV 136 (192)
Q Consensus 73 l~~~------------~gg~v~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~ 136 (192)
|+.+ ++|++.+... ...+++|+.+.... ++++|++++..+.++++|++.+.. ++ ..+
T Consensus 86 l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~~~~~g~~~v~~~~--~~~l~~~l~~~~~~~~vHS~~v~~---~~--~~v 158 (201)
T PRK13152 86 FLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEILK--QSPLYQGIPEKSDFYFVHSFYVKC---KD--EFV 158 (201)
T ss_pred HhhcccccCCcCCcccccEEEEECCCCCCCcCCccCeEEEEECC--CChhhhCCCCCCeEEEEcccEeec---CC--CcE
Confidence 9997 2266765431 12467788776543 577999998889999999999964 32 356
Q ss_pred EEEcCCC--ceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHH
Q 029484 137 TAWTEDG--LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 137 ~a~s~~~--~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
++.++++ .+++++. . +++|+|||||++ .+.+.+||++|++
T Consensus 159 ~a~~~~g~~~~~a~~~--~-~i~GvQFHPE~~-~~~g~~ll~~Fl~ 200 (201)
T PRK13152 159 SAKAQYGHKFVASLQK--D-NIFATQFHPEKS-QNLGLKLLENFAR 200 (201)
T ss_pred EEEECCCCEEEEEEec--C-CEEEEeCCCeec-ChhhHHHHHHHHh
Confidence 6766655 4566663 2 499999999997 6689999999986
|
|
| >PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-28 Score=184.71 Aligned_cols=162 Identities=25% Similarity=0.282 Sum_probs=117.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc------hhHHHHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~------~~~~~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
+++++++.+|++++++.. .+++. ++|+||++|| +++.... .+.+.+++ ++.++||||||+|+|+|+
T Consensus 14 ~~~~~l~~~g~~v~~~~~----~~~l~--~~d~lilpG~-g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~ 86 (199)
T PRK13181 14 SVANALKRLGVEAVVSSD----PEEIA--GADKVILPGV-GAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLF 86 (199)
T ss_pred HHHHHHHHCCCcEEEEcC----hHHhc--cCCEEEECCC-CCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhh
Confidence 688999999999988853 45554 7999998775 4432111 12333443 568899999999999999
Q ss_pred HH-----------hCCeeeecCCc---cccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc
Q 029484 75 EA-----------FGGKIVRSPLG---VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT 140 (192)
Q Consensus 75 ~~-----------~gg~v~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s 140 (192)
.+ +++++.+.+.. ..+.+|..+... .++++|+.++..+.++++|++.+.. + +...++|++
T Consensus 87 ~~~~~~~~~glg~l~~~v~~~~~~~~~~~~~G~~~v~~~--~~~~lf~~l~~~~~~~~~Hs~~v~~---~-~~~~~lA~s 160 (199)
T PRK13181 87 ESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWNSVKPL--KESPLFKGIEEGSYFYFVHSYYVPC---E-DPEDVLATT 160 (199)
T ss_pred hhcccCCcCCcceEEEEEEEcCCCCCCCCccCccccccC--CCChhHcCCCCCCEEEEeCeeEecc---C-CcccEEEEE
Confidence 99 78888886521 123445555433 3678999999889999999998864 3 345688888
Q ss_pred CCCce--EEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHH
Q 029484 141 EDGLI--MAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 141 ~~~~i--~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
+++.. ++++ +.+ +||+|||||++ .+.+..|++||++
T Consensus 161 ~~~~~~~~~~~--~~~-i~GvQFHPE~~-~~~g~~ll~nfl~ 198 (199)
T PRK13181 161 EYGVPFCSAVA--KDN-IYAVQFHPEKS-GKAGLKLLKNFAE 198 (199)
T ss_pred cCCCEEEEEEE--CCC-EEEEECCCccC-CHHHHHHHHHHHh
Confidence 76442 3343 334 99999999997 6789999999985
|
|
| >cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-28 Score=189.54 Aligned_cols=176 Identities=19% Similarity=0.234 Sum_probs=117.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hccCCCeEEECCCCCCCCCcchhHHHHH-HhCCCCCEEeeeHhHHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQDSGISLQTVL-ELGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~~~~dglii~GG~~~~~~~~~~~~~~~-~~~~~~PilGIC~G~Q~l~~~~ 77 (192)
|.++..+.+.++.+...+....+.. ...++||||++||++.+...+.. ..++ .++.++|+||||+|||+|+.++
T Consensus 23 L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~~~~~~~~-~~i~~~~~~~~PvlGIClG~Q~l~~~~ 101 (235)
T cd01746 23 LKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIRGVEGKI-LAIKYARENNIPFLGICLGMQLAVIEF 101 (235)
T ss_pred HHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCCcchhhHH-HHHHHHHHCCceEEEEEhHHHHHHHHH
Confidence 4555666777777765432221111 11379999999999887665433 3333 3568999999999999999999
Q ss_pred CCeeeecCCccc----cccceeeEE----------------------cccCCCccccCCC-Cccccccccccccccc---
Q 029484 78 GGKIVRSPLGVM----HGKSSLVYY----------------------DEKGEDGLLAGLS-NPFTAGRYHSLVIEKE--- 127 (192)
Q Consensus 78 gg~v~~~~~~~~----~~~~~~~~~----------------------~~~~~~~l~~~~~-~~~~~~~~H~~~v~~~--- 127 (192)
|+++...+.... ....+++.. .....+.|.+-++ +...++++|+++|+++
T Consensus 102 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i~~~s~l~~~~g~~~~~~n~~H~~~v~~~~~~ 181 (235)
T cd01746 102 ARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKYYGKDEVEERHRHRYEVNPEYVD 181 (235)
T ss_pred HHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEECCCChHHHHhCCCEEEEecCcccccCHHHHH
Confidence 999877653210 111111110 0011222222223 2467889999998642
Q ss_pred CCCCCCeEEEEEcC-CCceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHH
Q 029484 128 SFPSDALEVTAWTE-DGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFI 179 (192)
Q Consensus 128 ~l~~~~~~~~a~s~-~~~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~ 179 (192)
++...+++++|++. |+.|++++.+++|+++|+|||||+...+ +..+||+.|+
T Consensus 182 ~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~HPE~~~~~~~~~~lF~~fv 235 (235)
T cd01746 182 ELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPLKPHPLFVGFV 235 (235)
T ss_pred HHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEECCCCCcCCCCCccHHHHHhC
Confidence 23368899999998 8999999999999777999999998765 5678999885
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th |
| >PRK13527 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=183.30 Aligned_cols=167 Identities=23% Similarity=0.298 Sum_probs=119.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc----hhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~----~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++.++++..|++++++.... .+++. ++|+|||+||+++..+.. .+.+.+++ +..++|+||||+|+|+|+.+
T Consensus 18 ~~~~~l~~~g~~~~~~~~~~--~~~l~--~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~ 93 (200)
T PRK13527 18 ALKRALDELGIDGEVVEVRR--PGDLP--DCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKE 93 (200)
T ss_pred HHHHHHHhcCCCeEEEEeCC--hHHhc--cCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence 46789999999999888642 34554 799999999988764221 12344444 56789999999999999999
Q ss_pred hCCeeeecCCccccccceeeEEc---ccC------CCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEE
Q 029484 77 FGGKIVRSPLGVMHGKSSLVYYD---EKG------EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMA 147 (192)
Q Consensus 77 ~gg~v~~~~~~~~~~~~~~~~~~---~~~------~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a 147 (192)
+||...........|. .+..+. .++ .+.++.++++++.++++|++.+.. ++++++++|+++++.+ +
T Consensus 94 ~gg~~v~~~~~~~lG~-~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~H~~~v~~---lp~~~~~la~~~~~~~-a 168 (200)
T PRK13527 94 VGDDRVTKTEQPLLGL-MDVTVKRNAFGRQRDSFEAEIDLSGLDGPFHAVFIRAPAITK---VGGDVEVLAKLDDRIV-A 168 (200)
T ss_pred hcCCccCCCCCceeee-eEEEEeeccccCccccEEEeEeccccCCcceEEEEccccccc---cCCCeEEEEEECCEEE-E
Confidence 9984433221222332 222221 111 234577778899999999999875 5689999999998865 6
Q ss_pred EeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 148 ARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 148 i~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
++. . ++||+|||||.+. ..+|+++|++.+.
T Consensus 169 ~~~--~-~~~g~QfHPE~~~---~~~l~~~f~~~~~ 198 (200)
T PRK13527 169 VEQ--G-NVLATAFHPELTD---DTRIHEYFLKKVK 198 (200)
T ss_pred EEE--C-CEEEEEeCCCCCC---CCHHHHHHHHHHh
Confidence 653 2 4999999999862 2899999999874
|
|
| >PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-28 Score=187.09 Aligned_cols=156 Identities=28% Similarity=0.393 Sum_probs=105.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhcc--CCCeEEECCCCCCCC---------C-cch--hH------HHHH-HhCCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRK--NPRGVLISPGPGAPQ---------D-SGI--SL------QTVL-ELGPT 60 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglii~GG~~~~~---------~-~~~--~~------~~~~-~~~~~ 60 (192)
+.+++++++|..+.++++. .+.+++... .+||||++||..+.. . ... .. ..++ +.+++
T Consensus 28 ~Yv~~i~~aG~~pv~ip~~-~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~ 106 (217)
T PF07722_consen 28 SYVKAIEAAGGRPVPIPYD-ADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRG 106 (217)
T ss_dssp HHHHHHHHTT-EEEEE-SS---HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHcCCEEEEEccC-CCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcC
Confidence 4789999999999999985 344544332 899999999985431 0 011 11 1122 35799
Q ss_pred CCEEeeeHhHHHHHHHhCCeeeecCCccc----------cccceeeEEcccCCCccccCCC--CcccccccccccccccC
Q 029484 61 VPLFGVCMGLQCIGEAFGGKIVRSPLGVM----------HGKSSLVYYDEKGEDGLLAGLS--NPFTAGRYHSLVIEKES 128 (192)
Q Consensus 61 ~PilGIC~G~Q~l~~~~gg~v~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~H~~~v~~~~ 128 (192)
+||||||+|||+|+.++||++........ ....+.+... .++++..+- ..+.++++|+++|.+
T Consensus 107 ~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~---~~s~l~~~~~~~~~~vns~Hhq~v~~-- 181 (217)
T PF07722_consen 107 KPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIV---PGSLLAKILGSEEIEVNSFHHQAVKP-- 181 (217)
T ss_dssp --EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-TS--EEEEEE---TTSTCCCTSHHCTEEEEEEECEEECC--
T ss_pred CCEEEEcHHHHHHHHHhCCCceeecccCcCcccccccccccccccceec---cCchHHHHhCcCcceeecchhhhhhc--
Confidence 99999999999999999999988764310 1122223332 344444443 578999999999987
Q ss_pred CCCCCeEEEEEcCCCceEEEeeCCCC-ceEEEeccCC
Q 029484 129 FPSDALEVTAWTEDGLIMAARHKKYK-HLQGVQFHPE 164 (192)
Q Consensus 129 l~~~~~~~~a~s~~~~i~ai~~~~~~-~~~g~QfHPE 164 (192)
++++++++|+++|+.++||+..+++ +++|+|||||
T Consensus 182 -l~~~l~v~A~s~Dg~iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 182 -LGEGLRVTARSPDGVIEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp -HHCCEEEEEEECTSSEEEEEECCESS-EEEESS-CC
T ss_pred -cCCCceEEEEecCCcEEEEEEcCCCCCEEEEEeCCC
Confidence 6789999999999999999999965 6999999999
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D. |
| >cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=186.25 Aligned_cols=168 Identities=20% Similarity=0.299 Sum_probs=118.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhc--cCCCeEEECCCCCCCCCcc--hhHHHH-H---H-hC--CCCCEEeeeHhH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSG--ISLQTV-L---E-LG--PTVPLFGVCMGL 70 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglii~GG~~~~~~~~--~~~~~~-~---~-~~--~~~PilGIC~G~ 70 (192)
+.+++++++|+.+.++..+ .+.+++.. ..+||||++||+.+..... ...+.+ + + .+ ..+||||||+||
T Consensus 24 ~Yv~~l~~aG~~vvpi~~~-~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~ 102 (273)
T cd01747 24 SYVKFLESAGARVVPIWIN-ESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGF 102 (273)
T ss_pred HHHHHHHHCCCeEEEEEeC-CcHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHH
Confidence 5789999999999999875 33344433 2789999999987664221 111212 1 1 12 249999999999
Q ss_pred HHHHHHhCCeeeecCCccccccceeeEEcc-cCCCccccCCCC--------cccccccccccccccCCCC-----CCeEE
Q 029484 71 QCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSN--------PFTAGRYHSLVIEKESFPS-----DALEV 136 (192)
Q Consensus 71 Q~l~~~~gg~v~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~--------~~~~~~~H~~~v~~~~l~~-----~~~~~ 136 (192)
|+|+.++||++........++...++..+. ..++++|++++. ...++++|+++++.+.++. ..+++
T Consensus 103 QlL~~~~gg~~~~~~~~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~~~~~v 182 (273)
T cd01747 103 ELLTYLTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDFFNV 182 (273)
T ss_pred HHHHHHhCCCccccCCCccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccccccceEE
Confidence 999999999765433233456656666543 346778888864 3468899999997554432 45688
Q ss_pred EEEcCC--Cc--eEEEeeCCCCceEEEeccCCCCCCCch
Q 029484 137 TAWTED--GL--IMAARHKKYKHLQGVQFHPESIITTEG 171 (192)
Q Consensus 137 ~a~s~~--~~--i~ai~~~~~~~~~g~QfHPE~~~~~~~ 171 (192)
++++.| +. |++++++++| ++|+|||||+...+++
T Consensus 183 la~~~d~~g~~fis~ie~~~~p-i~gvQFHPEks~few~ 220 (273)
T cd01747 183 LTTNDDWNGVEFISTVEAYKYP-IYGVQWHPEKNAFEWK 220 (273)
T ss_pred EEEEecCCCceEEEEEEecCCc-eEEEecCCCccccccc
Confidence 998755 43 7999999987 9999999999876543
|
Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. |
| >TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-27 Score=181.12 Aligned_cols=162 Identities=23% Similarity=0.268 Sum_probs=115.9
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchh-----HHHH-H-HhCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS-----LQTV-L-ELGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~-----~~~~-~-~~~~~~PilGIC~G~Q~l~ 74 (192)
++.++++..|+++++++.+ +++. ++|+||++|+ +++.+...+ .+.+ + .++.++||||||+|+|+|+
T Consensus 13 ~l~~~l~~~g~~v~v~~~~----~~l~--~~d~lii~G~-~~~~~~~~~l~~~~~~~l~~~~~~~~~pvlGiC~G~Qll~ 85 (196)
T TIGR01855 13 SVKRALKRVGAEPVVVKDS----KEAE--LADKLILPGV-GAFGAAMARLRENGLDLFVELVVRLGKPVLGICLGMQLLF 85 (196)
T ss_pred HHHHHHHHCCCcEEEEcCH----HHhc--cCCEEEECCC-CCHHHHHHHHHHcCcHHHHHHHHhCCCCEEEECHHHHHhh
Confidence 6889999999999999842 3444 7999999763 443322111 1222 3 3578899999999999999
Q ss_pred HH------------hCCeeeecCCc-cccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcC
Q 029484 75 EA------------FGGKIVRSPLG-VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE 141 (192)
Q Consensus 75 ~~------------~gg~v~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 141 (192)
.+ +|+++.+.+.. ....++..+.. ..++++|+++++.+.++.+|++.++. ++ .. +++.++
T Consensus 86 ~~~~~~~~~~glg~~~~~v~~~~~~~~~~~g~~~~~~--~~~~~l~~~l~~~~~v~~~Hs~~v~~---~~-~~-~~a~~~ 158 (196)
T TIGR01855 86 ERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWNEVHP--VKESPLLNGIDEGAYFYFVHSYYAVC---EE-EA-VLAYAD 158 (196)
T ss_pred hccccCCCCCCcceeeEEEEECCCCCCCcccCeeeee--CCCChHHhCCCCCCEEEEECeeEecC---CC-Cc-EEEEEc
Confidence 98 78898887421 12333444433 34678999999999999999999974 33 43 566565
Q ss_pred C-CceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHH
Q 029484 142 D-GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 142 ~-~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
+ +..+++ ....+ +||+|||||+. .+.+.+|++||++
T Consensus 159 ~g~~~~~~-~~~~~-i~GvQFHPE~~-~~~g~~ll~~f~~ 195 (196)
T TIGR01855 159 YGEKFPAA-VQKGN-IFGTQFHPEKS-GKTGLKLLENFLE 195 (196)
T ss_pred CCcEEEEE-EecCC-EEEEECCCccC-cHhHHHHHHHHHh
Confidence 5 444444 34444 99999999987 5689999999986
|
This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6. |
| >PRK06186 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-27 Score=181.64 Aligned_cols=174 Identities=17% Similarity=0.227 Sum_probs=114.4
Q ss_pred cHHHHHHhC----CCeEEEEeCCCCCHHH-HhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHH
Q 029484 2 TFLKYMGEL----GYHFEVYRNDELTVEE-LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 2 ~l~~~l~~~----g~~~~v~~~~~~~~~~-~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~ 76 (192)
|+.++|+.+ +.++.+...+....++ -...++|||+++||.|.....+.......++++++|+||||+|||++...
T Consensus 19 Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP~LGIClGmQ~avIe 98 (229)
T PRK06186 19 AIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCGGFQHALLE 98 (229)
T ss_pred HHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeechhhHHHHHH
Confidence 455666554 4555555432111111 01228999999999999988888876666788999999999999987776
Q ss_pred hCCeeeecCC--cccc---cc--------------ceeeEEcccCCCccccCC-C-C--------ccccccccccccccc
Q 029484 77 FGGKIVRSPL--GVMH---GK--------------SSLVYYDEKGEDGLLAGL-S-N--------PFTAGRYHSLVIEKE 127 (192)
Q Consensus 77 ~gg~v~~~~~--~~~~---~~--------------~~~~~~~~~~~~~l~~~~-~-~--------~~~~~~~H~~~v~~~ 127 (192)
+..++..... ..+. .. ...+.+. +++++..+ + . ++.++..|.+.+
T Consensus 99 ~arnv~g~~dA~s~E~~~~~~~pvi~~~~~~~~~~~h~v~l~---~~S~l~~iyg~~~i~erhrHryeVNs~h~q~i--- 172 (229)
T PRK06186 99 YARNVLGWADAAHAETDPEGDRPVIAPLSCSLVEKTGDIRLR---PGSLIARAYGTLEIEEGYHCRYGVNPEFVAAL--- 172 (229)
T ss_pred HHhhhcCCcCCCcCCCCCCCCCCEEEECccccccCceEEEEC---CCCHHHHHhCCCeeeeeccccEEECHHHHHHH---
Confidence 6655533221 0000 00 1122222 22222211 1 1 223444444444
Q ss_pred CCCCCCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHHHHHH
Q 029484 128 SFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIV 183 (192)
Q Consensus 128 ~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~~ 183 (192)
...+++++|+++|+.|+++|.+++|+++|+|||||+.+.+ ...+||+.|++.+.
T Consensus 173 --~~~GL~vsa~s~DG~iEaiE~~~hpf~lGVQwHPE~~s~~~~~~~LF~~Fv~aa~ 227 (229)
T PRK06186 173 --ESGDLRVTGWDEDGDVRAVELPGHPFFVATLFQPERAALAGRPPPLVRAFLRAAR 227 (229)
T ss_pred --hcCCeEEEEEcCCCCEEEEEeCCCCcEEEEeCCCCccCCCCCCCHHHHHHHHHHh
Confidence 3589999999999999999999999999999999998765 56799999998865
|
|
| >PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=178.84 Aligned_cols=164 Identities=29% Similarity=0.390 Sum_probs=117.4
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchh----HHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS----LQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~----~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++.++++.+|+++.+++. ..++. ++|+||++|| +.+.+...+ .+.+++ +++++|+||||+|+|+|+.+
T Consensus 15 ~~~~~l~~~G~~~~~~~~----~~~~~--~~d~iii~G~-~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~ 87 (200)
T PRK13143 15 SVSKALERAGAEVVITSD----PEEIL--DADGIVLPGV-GAFGAAMENLSPLRDVILEAARSGKPFLGICLGMQLLFES 87 (200)
T ss_pred HHHHHHHHCCCeEEEECC----HHHHc--cCCEEEECCC-CCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence 578999999999998863 34454 8999999875 333222222 233333 57889999999999999986
Q ss_pred ------------hCCeeeecCCc--cccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCC
Q 029484 77 ------------FGGKIVRSPLG--VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED 142 (192)
Q Consensus 77 ------------~gg~v~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~ 142 (192)
+||++.+.+.+ ..+.++..+... ..++++++++ ...++++|++.+. ++++..+++++++
T Consensus 88 ~~~g~~~~~lg~~~g~v~~~~~~~~~~~~g~~~v~~~--~~~~l~~~l~-~~~~~~~Hs~~~~----~~~~~~~la~~~~ 160 (200)
T PRK13143 88 SEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVV--KDCPLFEGID-GEYVYFVHSYYAY----PDDEDYVVATTDY 160 (200)
T ss_pred hccCCCCCCcceeeEEEEEcCCCCCCCeecceEEEEc--CCChhhccCC-CcEEEEEeeeeeC----CCCcceEEEEEcC
Confidence 68888775421 123345555544 3677888884 4457789999886 3356889999987
Q ss_pred C-ceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHH
Q 029484 143 G-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182 (192)
Q Consensus 143 ~-~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~ 182 (192)
+ .++++...+ ++||+|||||+. .+.+.+||++|++++
T Consensus 161 ~~~~~~~~~~~--~~~gvQfHPE~~-~~~g~~i~~~f~~~~ 198 (200)
T PRK13143 161 GIEFPAAVCND--NVFGTQFHPEKS-GETGLKILENFVELI 198 (200)
T ss_pred CCEEEEEEEcC--CEEEEeCCCccc-hHHHHHHHHHHHHHH
Confidence 5 455555443 499999999997 568899999999875
|
|
| >KOG1622 consensus GMP synthase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-27 Score=194.66 Aligned_cols=172 Identities=26% Similarity=0.429 Sum_probs=142.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc--hhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~--~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
+.+.+|++.+..++++.. .+...+....+.||||+|||-|+++.. .+...+.++ ++||||||+|||+|+..+||+
T Consensus 32 I~RrvRel~v~se~~p~~-t~~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~if~~--~vpvLGICYGmQ~i~~~~Gg~ 108 (552)
T KOG1622|consen 32 IDRRVRELNVQSEILPLT-TPAKTITEYGPRGIIISGGPNSVYAEDAPSFDPAIFEL--GVPVLGICYGMQLINKLNGGT 108 (552)
T ss_pred HHHHHHHHhhhhhhccCC-ChhhhhhcCCceEEEEeCCCCccccCcCCCCChhHhcc--CCcceeehhHHHHHHHHhCCc
Confidence 568899999999999984 677778777899999999999988654 345666554 599999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcc--cccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEE
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPF--TAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQG 158 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g 158 (192)
|.+.. .++.|... +... ....+|+.+.... .++..|++.+.. .++++++.|+|...+++++.+..++ +||
T Consensus 109 V~~~~-~RE~G~~e-I~v~--~~~~lF~~~~~~~~~~VlltHgdsl~~---v~~g~kv~a~s~n~~va~i~~e~kk-iyg 180 (552)
T KOG1622|consen 109 VVKGM-VREDGEDE-IEVD--DSVDLFSGLHKTEFMTVLLTHGDSLSK---VPEGFKVVAFSGNKPVAGILNELKK-IYG 180 (552)
T ss_pred ccccc-ccCCCCce-EEcC--chhhhhhhhcccceeeeeeccccchhh---ccccceeEEeecCcceeeehhhhhh-hhc
Confidence 99976 35566654 3332 2455888776544 489999999987 6789999999999999999999887 999
Q ss_pred EeccCCCCCCCchHHHHHHHHHHHHHH
Q 029484 159 VQFHPESIITTEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 159 ~QfHPE~~~~~~~~~l~~~f~~~~~~~ 185 (192)
+|||||...+++|.+++.||+-.+...
T Consensus 181 lqfhpEV~~t~~g~~ll~nFl~~vc~~ 207 (552)
T KOG1622|consen 181 LQFHPEVTLTPNGKELLKNFLFDVCGC 207 (552)
T ss_pred CCCCCcccccCchhHHHHHHHHHHcCC
Confidence 999999999999999999999665543
|
|
| >PRK05380 pyrG CTP synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-26 Score=192.38 Aligned_cols=175 Identities=18% Similarity=0.269 Sum_probs=115.3
Q ss_pred cHHHHHHhCCC----eEEEEeCCCCCH------HHHhccCCCeEEECCCCCCCCCcchhHHHHH-HhCCCCCEEeeeHhH
Q 029484 2 TFLKYMGELGY----HFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVL-ELGPTVPLFGVCMGL 70 (192)
Q Consensus 2 ~l~~~l~~~g~----~~~v~~~~~~~~------~~~~~~~~dglii~GG~~~~~~~~~~~~~~~-~~~~~~PilGIC~G~ 70 (192)
|+.++|+.+|+ ++.+...+.... +.+. ++||||++||++.....+.. ..++ .+++++|+||||+||
T Consensus 306 Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~--~~DGIIlpGGfG~~~~~g~i-~~i~~a~e~~iPiLGIClGm 382 (533)
T PRK05380 306 SVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLK--GVDGILVPGGFGERGIEGKI-LAIRYARENNIPFLGICLGM 382 (533)
T ss_pred HHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhh--cCCEEEecCCCCccccccHH-HHHHHHHHCCCcEEEEchHH
Confidence 56677766654 455554432111 1222 79999999999987666543 3333 367899999999999
Q ss_pred HHHHHHhCCeeeecCCc--cccc--------------------------cceeeEEcccCCCccccC-CC---------C
Q 029484 71 QCIGEAFGGKIVRSPLG--VMHG--------------------------KSSLVYYDEKGEDGLLAG-LS---------N 112 (192)
Q Consensus 71 Q~l~~~~gg~v~~~~~~--~~~~--------------------------~~~~~~~~~~~~~~l~~~-~~---------~ 112 (192)
|+|+.++|+++...... .+.. +.+.+.+. +++++.. ++ +
T Consensus 383 Qll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~---~gS~l~~iyg~~~i~ErhrH 459 (533)
T PRK05380 383 QLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLK---PGTLAAEIYGKEEIYERHRH 459 (533)
T ss_pred HHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEEC---CCChHHHHhCCCceeeeccc
Confidence 99999999998532210 0111 01111111 1122211 11 2
Q ss_pred cccccccccccccccCCCCCCeEEEEEcCC-CceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHHHHHHHHhh
Q 029484 113 PFTAGRYHSLVIEKESFPSDALEVTAWTED-GLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 113 ~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~-~~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~ 187 (192)
++.++..|.+.+.. .+++++|+++| +.+++++.+++|+++|+|||||+.+.+ +..+||.+|++++.+.+.
T Consensus 460 ryeVNs~h~qal~~-----~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF~~FV~Aa~~~~~ 531 (533)
T PRK05380 460 RYEVNNKYREQLEK-----AGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAALENKK 531 (533)
T ss_pred ceecCHHHHHHHhh-----cCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHhh
Confidence 33445555555543 58999999976 499999999999888999999998776 688999999999986554
|
|
| >TIGR00337 PyrG CTP synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-26 Score=193.46 Aligned_cols=178 Identities=19% Similarity=0.245 Sum_probs=117.0
Q ss_pred cHHHHHHhCCC--eEEEEeCCCCCHHHHh------ccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHH
Q 029484 2 TFLKYMGELGY--HFEVYRNDELTVEELK------RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCI 73 (192)
Q Consensus 2 ~l~~~l~~~g~--~~~v~~~~~~~~~~~~------~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l 73 (192)
|+.++|+.+|+ .+.+...+ .+.+++. ..++||||++||++++...+........+++++|+||||+|||+|
T Consensus 307 SI~eAL~~ag~~~~~~V~~~~-i~se~i~~~~~~~L~~~dGIiLpGG~G~~~~~g~i~ai~~a~e~~iP~LGIClG~Qll 385 (525)
T TIGR00337 307 SVIEALKHAGAKLDTKVNIKW-IDSEDLEEEGAEFLKGVDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLGMQLA 385 (525)
T ss_pred HHHHHHHhCccccCCEEEEEE-ecHHHhhhhhhhhhcCCCEEEeCCCCCChhhcChHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 67889999887 33333322 2233332 125999999999999876665432222356899999999999999
Q ss_pred HHHhCCeeeecCCccc----cccceeeEE--ccc-------------------CCCccc-cCCC-Ccccccccccccccc
Q 029484 74 GEAFGGKIVRSPLGVM----HGKSSLVYY--DEK-------------------GEDGLL-AGLS-NPFTAGRYHSLVIEK 126 (192)
Q Consensus 74 ~~~~gg~v~~~~~~~~----~~~~~~~~~--~~~-------------------~~~~l~-~~~~-~~~~~~~~H~~~v~~ 126 (192)
+.++|+++..++.... .+..+++.. +.. ..++++ +-++ ......+.|++.|++
T Consensus 386 ~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~gS~L~~iyG~~~i~erhrHry~VNs 465 (525)
T TIGR00337 386 VIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPGTLAFKLYGKEEVYERHRHRYEVNN 465 (525)
T ss_pred HHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCCChHHHHhCCCceeecccceEEECH
Confidence 9999998888653211 011222211 000 011111 1111 122344556666653
Q ss_pred c---CCCCCCeEEEEEcCC-CceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHHH
Q 029484 127 E---SFPSDALEVTAWTED-GLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIK 180 (192)
Q Consensus 127 ~---~l~~~~~~~~a~s~~-~~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~ 180 (192)
. .+...+++++|+++| +.++|++.+++|+++|+|||||+.+++ +..+||+.|++
T Consensus 466 ~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~~~~~LF~~FV~ 524 (525)
T TIGR00337 466 EYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFVK 524 (525)
T ss_pred HHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCCchhHHHHHHHh
Confidence 2 222378999999988 589999999999888999999999877 67899999986
|
CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7). |
| >PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-25 Score=167.07 Aligned_cols=155 Identities=21% Similarity=0.240 Sum_probs=102.8
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch------hHHHHHHhCCCCCEEeeeHhHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLELGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~------~~~~~~~~~~~~PilGIC~G~Q~l~~ 75 (192)
|+.++++.+|+++.+++. .+++. ++|+||+||+ +++.+... +.+.+++ ..++|+||||+|||+|++
T Consensus 14 s~~~al~~~g~~~~~v~~----~~~l~--~~D~lIlPG~-g~~~~~~~~L~~~gl~~~i~~-~~g~PvlGIClGmQlL~~ 85 (192)
T PRK13142 14 NVKRAIEHLGYEVVVSNT----SKIID--QAETIILPGV-GHFKDAMSEIKRLNLNAILAK-NTDKKMIGICLGMQLMYE 85 (192)
T ss_pred HHHHHHHHcCCCEEEEeC----HHHhc--cCCEEEECCC-CCHHHHHHHHHHCCcHHHHHH-hCCCeEEEECHHHHHHhh
Confidence 688999999999999863 36665 7999988765 55433322 2344444 568999999999999999
Q ss_pred Hh-----------CCeeeecCC--ccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCC
Q 029484 76 AF-----------GGKIVRSPL--GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED 142 (192)
Q Consensus 76 ~~-----------gg~v~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~ 142 (192)
.. .+++.+.+. ..++.+|+.+.. +.++++ -.+++.|+|.+. ..+....++....
T Consensus 86 ~~~eg~~~GLgll~~~V~rf~~~~~vph~GWn~~~~----~~~l~~-----~~~yFVhSy~v~----~~~~v~~~~~yg~ 152 (192)
T PRK13142 86 HSDEGDASGLGFIPGNISRIQTEYPVPHLGWNNLVS----KHPMLN-----QDVYFVHSYQAP----MSENVIAYAQYGA 152 (192)
T ss_pred hcccCCcCccCceeEEEEECCCCCCCCcccccccCC----CCcccc-----cEEEEECCCeEC----CCCCEEEEEECCC
Confidence 64 134444321 123445554321 233332 347899999983 2234444444433
Q ss_pred CceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHH
Q 029484 143 GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 143 ~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
..+.+++.. +++|+|||||++ +..|.+|++||++-
T Consensus 153 ~~~~~v~~~---n~~g~QFHPEkS-~~~G~~ll~nf~~~ 187 (192)
T PRK13142 153 DIPAIVQFN---NYIGIQFHPEKS-GTYGLQILRQAIQG 187 (192)
T ss_pred eEEEEEEcC---CEEEEecCcccC-cHhHHHHHHHHHhc
Confidence 346666533 599999999996 68999999999763
|
|
| >KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=164.95 Aligned_cols=156 Identities=21% Similarity=0.289 Sum_probs=120.4
Q ss_pred HHHHHhCCCeEEEEeCC--CCC-HHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-----hCCCCCEEeeeHhHHHHHH
Q 029484 4 LKYMGELGYHFEVYRND--ELT-VEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-----LGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~--~~~-~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-----~~~~~PilGIC~G~Q~l~~ 75 (192)
+..|.+-|.....+++. +.| .+++. +|||+||+|+..+.....+|+..+.. ....+||+|||+|||++++
T Consensus 31 vsllg~ege~wd~frV~~gefP~~~Dl~--ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiar 108 (245)
T KOG3179|consen 31 VSLLGDEGEQWDLFRVIDGEFPQEEDLE--KYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIAR 108 (245)
T ss_pred HHHhcccCceeEEEEEecCCCCChhhhh--hhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHH
Confidence 45567778877666543 233 33444 79999999999998888788654432 2356999999999999999
Q ss_pred HhCCeeeecCCccccccceeeEEc-ccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCC
Q 029484 76 AFGGKIVRSPLGVMHGKSSLVYYD-EKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYK 154 (192)
Q Consensus 76 ~~gg~v~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~ 154 (192)
+.||+|.+.+.+...+........ ......+|..+|.++.....|.|.+-. +|++++++|+|+++.++++...+
T Consensus 109 a~Gg~Vgra~KG~~~~lg~itivk~~~~~~~yFG~~~~~l~IikcHqDevle---~PE~a~llasSe~ceve~fs~~~-- 183 (245)
T KOG3179|consen 109 AKGGKVGRAPKGPDLGLGSITIVKDAEKPEKYFGEIPKSLNIIKCHQDEVLE---LPEGAELLASSEKCEVEMFSIED-- 183 (245)
T ss_pred hhCCccccCCCCCcccccceEEEEecccchhhcccchhhhhHHhhcccceec---CCchhhhhccccccceEEEEecc--
Confidence 999999999876443333332222 223455888888999999999999876 77999999999999999999887
Q ss_pred ceEEEeccCCCC
Q 029484 155 HLQGVQFHPESI 166 (192)
Q Consensus 155 ~~~g~QfHPE~~ 166 (192)
+++++|.|||+.
T Consensus 184 ~~l~fQGHPEyn 195 (245)
T KOG3179|consen 184 HLLCFQGHPEYN 195 (245)
T ss_pred eEEEecCCchhh
Confidence 599999999996
|
|
| >KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=190.47 Aligned_cols=171 Identities=23% Similarity=0.410 Sum_probs=144.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
|..++|...|+++.|++++ .+.++ .+|||+++++|||+|.......+.+++ ++.++||+|||+|||+|+.+.|++
T Consensus 185 N~IRcL~~RGa~vtVvPw~-~~i~~---~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQllA~AaGak 260 (1435)
T KOG0370|consen 185 NQIRCLVKRGAEVTVVPWD-YPIAK---EEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQLLALAAGAK 260 (1435)
T ss_pred HHHHHHHHhCceEEEecCC-ccccc---cccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhHHHHHhhCCc
Confidence 6789999999999999974 44333 389999999999999887777666665 455699999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceEEE
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~g~ 159 (192)
..+++++ ++|.+.+...... +..+...++|+|+++.+.|+ .+++.+.++ +|+..+++.|..+| ++.+
T Consensus 261 T~KmKyG-NRGhNiP~~~~~t---------Grc~ITSQNHGYAVD~~tLp-~gWk~lFvN~NDgSNEGI~Hss~P-~fSv 328 (1435)
T KOG0370|consen 261 TYKMKYG-NRGHNIPCTCRAT---------GRCFITSQNHGYAVDPATLP-AGWKPLFVNANDGSNEGIMHSSKP-FFSV 328 (1435)
T ss_pred eEEeecc-ccCCCccceeccC---------ceEEEEecCCceeecccccc-CCCchheeecccCCCceEecCCCC-ceee
Confidence 9999986 4777766554322 25577789999999988877 789999887 88999999999988 9999
Q ss_pred eccCCCCCCC-chHHHHHHHHHHHHHHhhh
Q 029484 160 QFHPESIITT-EGKTIVRNFIKMIVRKEAA 188 (192)
Q Consensus 160 QfHPE~~~~~-~~~~l~~~f~~~~~~~~~~ 188 (192)
|||||.+.+| +..-+|..|+..+.+.+..
T Consensus 329 QFHPEat~GP~DTeyLFDiFi~lvkk~kst 358 (1435)
T KOG0370|consen 329 QFHPEATPGPHDTEYLFDVFIELVKKSKST 358 (1435)
T ss_pred ecCCcCCCCCcchHHHHHHHHHHHHHHhcC
Confidence 9999999999 8889999999998876554
|
|
| >cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=165.05 Aligned_cols=152 Identities=24% Similarity=0.363 Sum_probs=108.0
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc----hhHHHHHH-hCCCCCEEeeeHhHHHHHHHhC
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~----~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~g 78 (192)
.++++..|+++..++. ..++. ++|++|++||+.+..+.. .+.+.+++ ++.++|+||||+|+|+|+.+++
T Consensus 14 ~~~l~~~g~~v~~v~~----~~~l~--~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~~~ 87 (183)
T cd01749 14 IRALERLGVEVIEVRT----PEDLE--GIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLILLAKEVE 87 (183)
T ss_pred HHHHHHCCCeEEEECC----HHHhc--cCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHHHHHHHhc
Confidence 3789999999999975 23444 799999999986554321 22344443 5689999999999999999999
Q ss_pred C------------eeeecCCccccccceeeEEcccCCCccccCC-CCcccccccccccccccCCCCCCeEEEEEcCCCce
Q 029484 79 G------------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGL-SNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 145 (192)
Q Consensus 79 g------------~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i 145 (192)
+ ++.++.++...+.. ... ..+.+. ++.+.++++|.+.|.. ++++++++|+++++.+
T Consensus 88 ~~~~~~glG~~~~~v~~~~~g~~~g~~-~~~-------l~~~~~~~~~~~~~~~h~~~v~~---~p~~~~~la~~~~~~~ 156 (183)
T cd01749 88 DQGGQPLLGLLDITVRRNAFGRQVDSF-EAD-------LDIPGLGLGPFPAVFIRAPVIEE---VGPGVEVLAEYDGKIV 156 (183)
T ss_pred ccCCCCccCceeEEEEeeccccccceE-EEc-------CCCCcCCCCccEEEEEECcEEEE---cCCCcEEEEecCCEEE
Confidence 8 56655544323321 111 122333 2678899999999976 5689999999876554
Q ss_pred EEEeeCCCCceEEEeccCCCCCCCchHHHHHHHH
Q 029484 146 MAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179 (192)
Q Consensus 146 ~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~ 179 (192)
+++.. +++|+|||||.+ ...++++.|+
T Consensus 157 -a~~~~---~~~g~qfHPE~~---~~~~~~~~f~ 183 (183)
T cd01749 157 -AVRQG---NVLATSFHPELT---DDTRIHEYFL 183 (183)
T ss_pred -EEEEC---CEEEEEcCCccC---CCcchhhhhC
Confidence 77744 499999999996 3457777764
|
Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6. |
| >TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-24 Score=161.32 Aligned_cols=154 Identities=18% Similarity=0.274 Sum_probs=107.2
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC----cchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~----~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+..++|+.+|+++++++. .+++. ++|++||+||+++..+ ...+.+.+++ ++.++|+||||+|+|+|+.+
T Consensus 13 e~~~~l~~~g~~~~~v~~----~~~l~--~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~ 86 (184)
T TIGR03800 13 EHARALEALGVEGVEVKR----PEQLD--EIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKE 86 (184)
T ss_pred HHHHHHHHCCCEEEEECC----hHHhc--cCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhh
Confidence 456889999999999864 34444 8999999999776522 2234455554 57899999999999999999
Q ss_pred hC-----------CeeeecCCccccccceeeEEcccCCCccccCCC-CcccccccccccccccCCCCCCeEEEEEcCCCc
Q 029484 77 FG-----------GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLVIEKESFPSDALEVTAWTEDGL 144 (192)
Q Consensus 77 ~g-----------g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~ 144 (192)
+. +++.++.++...+........ +++. +.+...+.|.+.|.. ++++++++|+++++.
T Consensus 87 ~~~~~~~~lg~~~~~v~~~~~g~~~~s~~~~l~~--------~~~~~~~~~~~~~h~~~v~~---lp~~~~vla~~~~~~ 155 (184)
T TIGR03800 87 IIGQKEGYLGLLDMTVERNAYGRQVDSFEAEVDI--------KGVGDDPITGVFIRAPKIVS---VGNGVEILAKVGNRI 155 (184)
T ss_pred hccCCCCccCcEEEEEEeeccCCccccEEEEeec--------ccCCCCcceEEEEcCCCccc---CCCCeEEEEEeCCee
Confidence 72 466665544433332211111 1111 235666899999986 568999999987755
Q ss_pred eEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHH
Q 029484 145 IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 179 (192)
Q Consensus 145 i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~ 179 (192)
.|++.. ++||+|||||++ ...++++.|+
T Consensus 156 -~a~~~~---~~~gvQfHPE~~---~~~~~~~~f~ 183 (184)
T TIGR03800 156 -VAVRQG---NILVSSFHPELT---DDHRVHEYFL 183 (184)
T ss_pred -EEEEeC---CEEEEEeCCccC---CCchHHHHhh
Confidence 566533 499999999996 3348888886
|
Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase. |
| >PLN02327 CTP synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-24 Score=181.79 Aligned_cols=158 Identities=21% Similarity=0.253 Sum_probs=109.0
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCeeeecCCcc--c---cccceeeE-EcccC--
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV--M---HGKSSLVY-YDEKG-- 102 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~~~~~--~---~~~~~~~~-~~~~~-- 102 (192)
++|||+++||+++....+.........++++|+||||+|||+++.+++.++...+... + ......+. ..+..
T Consensus 362 ~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClGmQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~ 441 (557)
T PLN02327 362 GADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLGMQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKT 441 (557)
T ss_pred cCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccc
Confidence 7999999999998877766543333467899999999999999999988877654211 0 11111111 11000
Q ss_pred -----------------CCccccCC-CC--ccccccccccccccc---CCCCCCeEEEEEcCCC-ceEEEeeCCCCceEE
Q 029484 103 -----------------EDGLLAGL-SN--PFTAGRYHSLVIEKE---SFPSDALEVTAWTEDG-LIMAARHKKYKHLQG 158 (192)
Q Consensus 103 -----------------~~~l~~~~-~~--~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~-~i~ai~~~~~~~~~g 158 (192)
++++...+ .. .....+.|+|+|+.+ .+...+++++|+++|+ .+++++.+++|+++|
T Consensus 442 ~~GGtMRLG~~~~~~~~~~S~l~~iYg~~~~VnerHrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvG 521 (557)
T PLN02327 442 HMGGTMRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVG 521 (557)
T ss_pred cCCceEECCCcccccCCCCCHHHHHhCCccceeeeeccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEE
Confidence 11111111 11 133556667888653 3335789999999887 699999999997789
Q ss_pred EeccCCCCCCC-chHHHHHHHHHHHHHHhhh
Q 029484 159 VQFHPESIITT-EGKTIVRNFIKMIVRKEAA 188 (192)
Q Consensus 159 ~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~~ 188 (192)
+|||||+.+.+ +..++|..|++++.+.+.+
T Consensus 522 VQfHPE~~s~p~~~~pLF~~Fv~Aa~~~~~~ 552 (557)
T PLN02327 522 VQFHPEFKSRPGKPSPLFLGLIAAASGQLDA 552 (557)
T ss_pred EEcCCCCCCCCCCchHHHHHHHHHHHHhHHh
Confidence 99999998776 5689999999998875544
|
|
| >COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-24 Score=177.45 Aligned_cols=185 Identities=18% Similarity=0.268 Sum_probs=123.2
Q ss_pred cHHHHHHhCCC----eEEEEeCC--CCCH---HHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHH
Q 029484 2 TFLKYMGELGY----HFEVYRND--ELTV---EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQC 72 (192)
Q Consensus 2 ~l~~~l~~~g~----~~~v~~~~--~~~~---~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~ 72 (192)
|+.++|+.+|+ ++.+...+ +... +++.. .+||++++||.|.....+.......+.++++|+||||+|||+
T Consensus 306 Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~-~~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGIClGmQ~ 384 (533)
T COG0504 306 SVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEK-LVDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLGMQL 384 (533)
T ss_pred HHHHHHHhhhhhcCCceeeEEEccccccccchhhhhh-cCCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEchhHHH
Confidence 56677776654 44444322 2211 12222 289999999999999899887777788999999999999999
Q ss_pred HHHHhCCeeeecCCcc-----ccccceeeEE-cc-------------------cCCCccccCCC--Cccccccccccccc
Q 029484 73 IGEAFGGKIVRSPLGV-----MHGKSSLVYY-DE-------------------KGEDGLLAGLS--NPFTAGRYHSLVIE 125 (192)
Q Consensus 73 l~~~~gg~v~~~~~~~-----~~~~~~~~~~-~~-------------------~~~~~l~~~~~--~~~~~~~~H~~~v~ 125 (192)
.+..+.-++.-.+... +......+.. .+ -...++...+- +...-.+.|.|+++
T Consensus 385 aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~gT~a~~lY~~~~v~ERHRHRYEvN 464 (533)
T COG0504 385 AVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKPGTLAAKLYGKDEIYERHRHRYEVN 464 (533)
T ss_pred HHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCCCcHHHHHhCCCeeeeeccchhhcC
Confidence 9985444333322100 0000000000 00 00111221111 23444566788886
Q ss_pred cc---CCCCCCeEEEEEcCC-CceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHHHHHHHHhh
Q 029484 126 KE---SFPSDALEVTAWTED-GLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 126 ~~---~l~~~~~~~~a~s~~-~~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~ 187 (192)
.+ .|...++++.++|+| ..++++|..++|+++|+|||||+++.| +..++|..|++++...+.
T Consensus 465 ~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~~phPlf~~fv~Aa~~~~~ 531 (533)
T COG0504 465 NDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFVKAALEYKK 531 (533)
T ss_pred HHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCCCCCccHHHHHHHHHHhhc
Confidence 43 445578999999987 579999999999999999999999998 789999999999886654
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=178.43 Aligned_cols=169 Identities=23% Similarity=0.292 Sum_probs=119.6
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc------hhHHHHHH-hCCCCCEEeeeHhHHHH
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVPLFGVCMGLQCI 73 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~------~~~~~~~~-~~~~~PilGIC~G~Q~l 73 (192)
+++.++++.+|+++.+++. .+++. ++|+||++|| +++.... .+.+.+++ ++.++|+||||+|||+|
T Consensus 20 ~sl~~al~~~G~~v~~v~~----~~~l~--~~D~lIlpG~-gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlL 92 (538)
T PLN02617 20 RSVRNAIRHLGFTIKDVQT----PEDIL--NADRLIFPGV-GAFGSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLL 92 (538)
T ss_pred HHHHHHHHHCCCeEEEECC----hhhhc--cCCEEEECCC-CCHHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHH
Confidence 3688999999999988863 34554 8999999775 4433221 13344444 56789999999999999
Q ss_pred HHHh---------C---CeeeecC----CccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEE
Q 029484 74 GEAF---------G---GKIVRSP----LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 137 (192)
Q Consensus 74 ~~~~---------g---g~v~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~ 137 (192)
+.+. | |++.+.. ....+.+|+.+... .+++++.+++ ...++++|+|.+.. ++.....+.
T Consensus 93 a~~~~E~g~~~glg~l~G~v~~~~~~~~~~vp~iGw~~V~~~--~~spL~~~l~-~~~vy~vHSy~v~~--~p~~~~~v~ 167 (538)
T PLN02617 93 FESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWNALQIT--KDSELLDGVG-GRHVYFVHSYRATP--SDENKDWVL 167 (538)
T ss_pred hhhhhhcCCccCcccccceEEECCccCCCCCCeecceEEEec--CCChhHhcCC-CcEEEEEeEEEEEe--cCCCCcEEE
Confidence 9873 2 6666542 12345667777654 3578888885 45688999998753 232333444
Q ss_pred EEcC--CCceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHHHH
Q 029484 138 AWTE--DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 138 a~s~--~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~ 185 (192)
++++ ++.+++++.. +++|+|||||++ .+.+.+||++|+..+.+.
T Consensus 168 a~~~~g~~~IaAI~~g---nI~GVQFHPE~s-~~~G~~L~~nFl~~~~~~ 213 (538)
T PLN02617 168 ATCNYGGEFIASVRKG---NVHAVQFHPEKS-GATGLSILRRFLEPKSSA 213 (538)
T ss_pred EEEccCCCcEEEEEeC---CEEEEEcCCccC-chhHHHHHHHHHHhhhhh
Confidence 5443 4579999864 499999999997 478999999999988753
|
|
| >TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=163.27 Aligned_cols=172 Identities=17% Similarity=0.209 Sum_probs=114.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC--------cchhHHHHHH-hCCCCCEEeeeHhHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--------SGISLQTVLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~--------~~~~~~~~~~-~~~~~PilGIC~G~Q~ 72 (192)
.++++++++|+++++++..+. ++. ++|+|||+||+....+ ...+.+.+++ .+.++||+|||.|+|+
T Consensus 16 ~~~~al~~~G~~~~~i~~~~~---~l~--~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~Ql 90 (227)
T TIGR01737 16 DTVYALRLLGVDAEIVWYEDG---SLP--DYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQI 90 (227)
T ss_pred HHHHHHHHCCCeEEEEecCCC---CCC--CCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHHHH
Confidence 357899999999999976422 233 7999999999753221 1123344443 5688999999999999
Q ss_pred HHHH--hCCeeeecCCccccccceeeEEcccCCCccccCCCCc--cccccccccc---cccc---CCCCCCeEEEEEc--
Q 029484 73 IGEA--FGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNP--FTAGRYHSLV---IEKE---SFPSDALEVTAWT-- 140 (192)
Q Consensus 73 l~~~--~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~H~~~---v~~~---~l~~~~~~~~a~s-- 140 (192)
|+.+ ++|++.++........|..+... ..+++++++++.. +.+...|+++ ++.+ +|. ....+..+.
T Consensus 91 La~~GlL~G~l~~n~~~~~~~~~~~~~v~-~~~~~~~~~~~~g~~~~~pi~H~eG~y~~~~~~l~~l~-~~~~i~~~y~d 168 (227)
T TIGR01737 91 LVEAGLLPGALLPNDSLRFICRWVYLRVE-NADTIFTKNYKKGEVIRIPIAHGEGRYYADDETLARLE-SNDQVVFRYCD 168 (227)
T ss_pred HHHcCCCCCceeecCCCceEEEeEEEEEC-CCCChhhccCCCCCEEEEEeEcCCcCeEcCHHHHHHHH-HCCcEEEEEEC
Confidence 9996 89998887644323334444443 3356788887632 3332355433 2221 222 223333332
Q ss_pred ----------CC---CceEEEeeCCCCceEEEeccCCCC-----CCCchHHHHHHHHHH
Q 029484 141 ----------ED---GLIMAARHKKYKHLQGVQFHPESI-----ITTEGKTIVRNFIKM 181 (192)
Q Consensus 141 ----------~~---~~i~ai~~~~~~~~~g~QfHPE~~-----~~~~~~~l~~~f~~~ 181 (192)
++ ..|+++++++++ ++|+|||||+. .+++|..||++|+++
T Consensus 169 ~~g~~~~~~npngs~~~i~~i~~~~~~-~~g~~~HpE~~~~~~~~~~~g~~~~~~~~~~ 226 (227)
T TIGR01737 169 EDGDVAEEANPNGSVGNIAGIVNERGN-VLGMMPHPERASEKLLGGDDGLKLFESLVEW 226 (227)
T ss_pred CCCCCCCCCCCCCCHHHHcccCCCCCC-EEEEecCchhhcccccCCcccHHHHHHHHhh
Confidence 22 359999999987 99999999998 467999999999875
|
In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea. |
| >KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.7e-23 Score=171.69 Aligned_cols=175 Identities=28% Similarity=0.537 Sum_probs=129.5
Q ss_pred CcHHHHHHhC-CCeE-EEEeCCCCCHHHH-hc-c---CCCeEEECCCCCCCCCcc--hhHHHHHHhCCCCCEEeeeHhHH
Q 029484 1 MTFLKYMGEL-GYHF-EVYRNDELTVEEL-KR-K---NPRGVLISPGPGAPQDSG--ISLQTVLELGPTVPLFGVCMGLQ 71 (192)
Q Consensus 1 ~~l~~~l~~~-g~~~-~v~~~~~~~~~~~-~~-~---~~dglii~GG~~~~~~~~--~~~~~~~~~~~~~PilGIC~G~Q 71 (192)
||+.+.+... |... .++++ +...++. .. . -+|+||+.+|||+|..+. .....+....+.+||||||+|||
T Consensus 28 fNiy~ll~~~~~vp~V~~vh~-~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI~~rl~~~~~~iPilGICLGfQ 106 (767)
T KOG1224|consen 28 FNIYQLLSTINGVPPVVIVHD-EWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGICLRLLLECRDIPILGICLGFQ 106 (767)
T ss_pred hhHHHHHHHhcCCCcEEEEec-cccCHHHHHHHhhccccceEEecCCCCCCCcHHHHHHHHHHHHhcCCCceeeeehhhH
Confidence 6888888775 4444 44444 3333332 11 1 399999999999994332 23344444567899999999999
Q ss_pred HHHHHhCCeeeecCCccccccceeeEEcccCCCccccCC----CCcccccccccccccccCCCCCCeEEEEEcCC-C--c
Q 029484 72 CIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGL----SNPFTAGRYHSLVIEKESFPSDALEVTAWTED-G--L 144 (192)
Q Consensus 72 ~l~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~-~--~ 144 (192)
.|+.+-|+.|...+ ...||....+.+. +..+|.++ +..|.+..+|+-.+++ ++.+-+.+++++.| . .
T Consensus 107 al~l~hGA~v~~~n-~p~HGrvs~i~~~---~~~~f~gi~sg~~~~fK~~RYHSL~in~--~pid~l~il~t~~ddng~i 180 (767)
T KOG1224|consen 107 ALGLVHGAHVVHAN-EPVHGRVSGIEHD---GNILFSGIPSGRNSDFKVVRYHSLIINS--LPIDLLPILWTIYDDNGHI 180 (767)
T ss_pred hHhhhcccceecCC-CcccceeeeEEec---CcEEEccCCCCCcccceeEEeEEEEecC--CchhhhcceeEeecCCceE
Confidence 99999999999766 4568888877765 33455554 4679999999988875 45556777777633 3 5
Q ss_pred eEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 145 IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 145 i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
++.+.+++.| .+|+|||||...++.|.+||.||++...
T Consensus 181 lMsi~~~~fP-hfG~qyHPES~~s~~g~~lfkNFl~lt~ 218 (767)
T KOG1224|consen 181 LMSIMHSSFP-HFGLQYHPESIASTYGSQLFKNFLDLTV 218 (767)
T ss_pred EEEeeccCCC-ccceeeChHHhhhhhhHHHHHHHHHhhc
Confidence 8899999998 7999999999988899999999998753
|
|
| >PRK05368 homoserine O-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-21 Score=154.40 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=111.3
Q ss_pred HHHHhccCCCeEEECCCCCC--CCCcch-h--HHHHHH--hCCCCCEEeeeHhHHHHHHHhCCeeeecCCccccccceee
Q 029484 24 VEELKRKNPRGVLISPGPGA--PQDSGI-S--LQTVLE--LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLV 96 (192)
Q Consensus 24 ~~~~~~~~~dglii~GG~~~--~~~~~~-~--~~~~~~--~~~~~PilGIC~G~Q~l~~~~gg~v~~~~~~~~~~~~~~~ 96 (192)
.+++...+|||+||+|+|.. .++... | +..+.+ ....+|+||||+|+|+++.++||...........|....
T Consensus 92 ~~~i~~~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~- 170 (302)
T PRK05368 92 FEDIKDEKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEH- 170 (302)
T ss_pred HHHhccCCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEE-
Confidence 34455568999999999988 666555 4 222222 246899999999999999999996332321223443322
Q ss_pred EEcccCCCccccCCCCcccccccccccccccCC-CCCCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCCchHHHH
Q 029484 97 YYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV 175 (192)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~ 175 (192)
... ...++|++++++.|.+..+|...|..+.+ .+++++++|.|+.+.++++..++.. ++++|+|||+. ...|.
T Consensus 171 ~~~-~~~~pL~~g~~d~F~~phSr~~~V~~~~i~~~~~l~vLA~S~~~gv~~~~~~~~r-~~~vQgHPEYd----~~tL~ 244 (302)
T PRK05368 171 RVL-DPHHPLLRGFDDSFLVPHSRYTEVREEDIRAATGLEILAESEEAGVYLFASKDKR-EVFVTGHPEYD----ADTLA 244 (302)
T ss_pred EEc-CCCChhhcCCCCccccceeehhhccHHHhccCCCCEEEecCCCCCeEEEEeCCCC-EEEEECCCCCC----HHHHH
Confidence 222 23678999999999999999888854322 4478999999999999999986654 99999999994 66677
Q ss_pred HHHHHHHH
Q 029484 176 RNFIKMIV 183 (192)
Q Consensus 176 ~~f~~~~~ 183 (192)
+++.+.+.
T Consensus 245 ~EY~RD~~ 252 (302)
T PRK05368 245 QEYFRDLG 252 (302)
T ss_pred HHHHHHHh
Confidence 77766555
|
|
| >PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-21 Score=147.83 Aligned_cols=171 Identities=18% Similarity=0.272 Sum_probs=116.1
Q ss_pred HHHHHH-hCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC--------cchhHHHHHH-hCCCCCEEeeeHhHHH
Q 029484 3 FLKYMG-ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--------SGISLQTVLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 3 l~~~l~-~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~--------~~~~~~~~~~-~~~~~PilGIC~G~Q~ 72 (192)
+.++++ .+|+++..+...+ .++. ++|+|||+||++.... ...+.+.+++ .++++|++|||.|+|+
T Consensus 17 ~~~a~~~~~G~~~~~v~~~~---~~l~--~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~ql 91 (219)
T PRK03619 17 MARALRDLLGAEPEYVWHKE---TDLD--GVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQI 91 (219)
T ss_pred HHHHHHhcCCCeEEEEecCc---CCCC--CCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHH
Confidence 567888 8999998886532 2333 8999999999753221 1223344443 5689999999999999
Q ss_pred HHHH--hCCeeeecCCccccccceeeEEcccCCCccccCCC--Cccccccccccc---ccc---cCCCCCCeEEEEEc--
Q 029484 73 IGEA--FGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS--NPFTAGRYHSLV---IEK---ESFPSDALEVTAWT-- 140 (192)
Q Consensus 73 l~~~--~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~H~~~---v~~---~~l~~~~~~~~a~s-- 140 (192)
|+++ ++|++.++........|..+.+. ..++++++.+. ..+.+...|+.. ++. +.+...+..++..+
T Consensus 92 La~~GLL~g~l~~n~~~~~~~~~v~v~i~-~~~~~~~~~~~~g~~~~~~~aH~~~r~~~~~~~~~~l~~~~~~~~~~~~~ 170 (219)
T PRK03619 92 LTEAGLLPGALTRNASLKFICRDVHLRVE-NNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYCDE 170 (219)
T ss_pred HHHcCCCCCeEEEcCCCcEEEEEEEEEEC-CCCChhhcCCCCCCEEEEEEEcCcccEEECHHHHHHHHhCCcEEEEEcCC
Confidence 9997 99999988755444455555554 34677887773 234344455433 322 13344566655554
Q ss_pred -CCC---ceEEEeeCCCCceEEEeccCCCCCC-----CchHHHHHHHHH
Q 029484 141 -EDG---LIMAARHKKYKHLQGVQFHPESIIT-----TEGKTIVRNFIK 180 (192)
Q Consensus 141 -~~~---~i~ai~~~~~~~~~g~QfHPE~~~~-----~~~~~l~~~f~~ 180 (192)
+++ .|+++...+. +++|+|||||+... .++.+||++|++
T Consensus 171 npngs~~~ia~i~~~~~-~~~g~~~HPE~~~~~~~~~~~g~~lf~~~v~ 218 (219)
T PRK03619 171 NPNGSVNDIAGIVNEKG-NVLGMMPHPERAVEPLLGSTDGLKLFESLLK 218 (219)
T ss_pred CCCCCHHHhcccCCCCC-CEEEEeCCCCccccCccCCCcCHHHHHHHhh
Confidence 555 3777776554 69999999999965 389999999985
|
|
| >PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=141.64 Aligned_cols=70 Identities=21% Similarity=0.368 Sum_probs=51.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC----cchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~----~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+..++|+.+|+++.+++. .+++. ++|+|||+||.+.... ...+.+.+++ .++++|+||||+|||+|++.
T Consensus 15 e~~~aL~~lG~ev~~v~~----~~~L~--~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~ 88 (248)
T PLN02832 15 EHIAALRRLGVEAVEVRK----PEQLE--GVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGLIFLAER 88 (248)
T ss_pred HHHHHHHHCCCcEEEeCC----HHHhc--cCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence 356889999999988864 45665 8999999998654321 1123344444 46799999999999999997
Q ss_pred h
Q 029484 77 F 77 (192)
Q Consensus 77 ~ 77 (192)
.
T Consensus 89 ~ 89 (248)
T PLN02832 89 A 89 (248)
T ss_pred h
Confidence 4
|
|
| >COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-19 Score=134.03 Aligned_cols=174 Identities=18% Similarity=0.276 Sum_probs=119.1
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC--cc------hhHHHHHH-hCCCCCEEeeeHhHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--SG------ISLQTVLE-LGPTVPLFGVCMGLQCI 73 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~--~~------~~~~~~~~-~~~~~PilGIC~G~Q~l 73 (192)
.+.+++.+|.+++.++..+.... .++|+|+++||.+.-+- .+ +.++.+++ .++++|+||||.|||+|
T Consensus 19 ~~~A~~~aG~~~~~V~~~d~~~~----~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL 94 (231)
T COG0047 19 MAAAFERAGFEAEDVWHSDLLLG----RDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQIL 94 (231)
T ss_pred HHHHHHHcCCCceEEEeeecccC----CCccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHH
Confidence 35778889999999987533222 17999999999765432 22 23445554 56999999999999999
Q ss_pred HHH--hCCeeeecCCccccccceeeEEcccCCCccccCCC--Cccccccccccc---cccc---CCCCCCeEEEEEc---
Q 029484 74 GEA--FGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS--NPFTAGRYHSLV---IEKE---SFPSDALEVTAWT--- 140 (192)
Q Consensus 74 ~~~--~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~H~~~---v~~~---~l~~~~~~~~a~s--- 140 (192)
.++ +.|.+.++........|..+.... .++++++.+. +.+.+.-.|+.+ ++.+ +|..++-.++-..
T Consensus 95 ~e~gLlPGal~~N~s~~F~cr~v~l~V~~-~~t~ft~~~~~g~~i~ipVAHgEGr~~~~~~~l~~l~~ngqvvfrY~d~~ 173 (231)
T COG0047 95 SEAGLLPGALTRNESLRFECRWVYLRVEN-NNTPFTSGYEGGEVIPIPVAHGEGRYYADDETLAELEENGQVVFRYVDNN 173 (231)
T ss_pred HHcCcCCcceecCCCCceEEEEEEEEEec-CCCHHHHhcCCCceEEEEEeecceeEEccHHHHHHHhhCCeEEEEEecCC
Confidence 986 889999988766666666666553 3555666654 456666677533 3221 2222333333222
Q ss_pred --------CCC---ceEEEeeCCCCceEEEeccCCCCC-----CCchHHHHHHHHHHH
Q 029484 141 --------EDG---LIMAARHKKYKHLQGVQFHPESII-----TTEGKTIVRNFIKMI 182 (192)
Q Consensus 141 --------~~~---~i~ai~~~~~~~~~g~QfHPE~~~-----~~~~~~l~~~f~~~~ 182 (192)
+++ .|++|.+.+++ ++|++.||||.. +.|+.+||++.++.+
T Consensus 174 G~~~~~~NPNGS~~~IaGI~n~~G~-V~gmMPHPERa~~~~~g~~Dg~~lF~s~~~~~ 230 (231)
T COG0047 174 GETEEYANPNGSVNGIAGITNEDGN-VLGMMPHPERASESLLGGEDGLRLFRSARKYL 230 (231)
T ss_pred CceeeeeCCCCChhhceeEEcCCCC-EEEecCCchhhhhcccCCchHHHHHHHHHHhh
Confidence 233 39999999976 999999999985 347899999888764
|
|
| >PRK13526 glutamine amidotransferase subunit PdxT; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-19 Score=131.61 Aligned_cols=151 Identities=13% Similarity=0.221 Sum_probs=104.5
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCC----CCcchhHHHHHHhCCCCCEEeeeHhHHHHHHH---
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP----QDSGISLQTVLELGPTVPLFGVCMGLQCIGEA--- 76 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~----~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~--- 76 (192)
.++++.+|.++.+++. .+++. ++|+||+|||++.. .....+.+.+++...++|++|||.|+|+|++.
T Consensus 18 ~~al~~lG~~v~~v~~----~~~l~--~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~~kpilGICaG~qlL~~~s~~ 91 (179)
T PRK13526 18 ADMFKSLGVEVKLVKF----NNDFD--SIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCSSKPVFGTCAGSIILSKGEGY 91 (179)
T ss_pred HHHHHHcCCcEEEECC----HHHHh--CCCEEEECCChHHHHHHHhhhcCcHHHHHHHHcCCcEEEEcHHHHHHHccCCC
Confidence 5678899999887763 45565 89999999986654 11223455565543478999999999999992
Q ss_pred hC---CeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCC
Q 029484 77 FG---GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKY 153 (192)
Q Consensus 77 ~g---g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~ 153 (192)
+| ++|.++.+++....|..... +.++ .+...+...-.|.+ ..++++++|+-++.++ +++..
T Consensus 92 Lg~idg~V~Rn~~Grq~~sf~~~~~--------~~~~--~~~~vFiRAP~i~~---~~~~v~vla~~~~~~v-~v~q~-- 155 (179)
T PRK13526 92 LNLLDLEVQRNAYGRQVDSFVADIS--------FNDK--NITGVFIRAPKFIV---VGNQVDILSKYQNSPV-LLRQA-- 155 (179)
T ss_pred CCCccEEEEEcCCCCccceeeeecC--------cCCc--eEEEEEEcCceEeE---cCCCcEEEEEECCEEE-EEEEC--
Confidence 44 78888887654443322111 1111 36666777766765 5688999999866444 55544
Q ss_pred CceEEEeccCCCCCCCchHHHHHHHHH
Q 029484 154 KHLQGVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 154 ~~~~g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
+++|+-||||.+ ++.++.+.|++
T Consensus 156 -~~l~~~FHPElt---~d~r~h~~f~~ 178 (179)
T PRK13526 156 -NILVSSFHPELT---QDPTVHEYFLA 178 (179)
T ss_pred -CEEEEEeCCccC---CCchHHHHHhc
Confidence 499999999997 56688888875
|
|
| >PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=137.83 Aligned_cols=180 Identities=18% Similarity=0.266 Sum_probs=115.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCC--Ccch----h-----HHHHHH-hCCCCCEEeeeHh
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--DSGI----S-----LQTVLE-LGPTVPLFGVCMG 69 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~--~~~~----~-----~~~~~~-~~~~~PilGIC~G 69 (192)
...++++++|+++.+++..+.........++|+|||+||.+..+ ..+. . .+.+++ +++++||||||.|
T Consensus 19 e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG 98 (261)
T PRK01175 19 ETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNG 98 (261)
T ss_pred HHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHH
Confidence 35788999999999988643211111112899999999964322 1211 1 133343 5789999999999
Q ss_pred HHHHHHH--hCC----------eeeecCCccccccceeeEEcccCCCccccCCC-Cccccccccccc--c-ccc----CC
Q 029484 70 LQCIGEA--FGG----------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLV--I-EKE----SF 129 (192)
Q Consensus 70 ~Q~l~~~--~gg----------~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~--v-~~~----~l 129 (192)
+|+|+++ +.| ++.++........|..+.... .+++++..+. ..+.+...|+++ + ..+ .|
T Consensus 99 ~QlLa~~GlLpg~~~~~~~~~~~L~~N~s~~f~~~~~~~~v~~-~~s~~~~~~~~~~~~~piah~eG~~~~~~~~~l~~l 177 (261)
T PRK01175 99 FQVLVELGLLPGFDEIAEKPEMALTVNESNRFECRPTYLKKEN-RKCIFTKLLKKDVFQVPVAHAEGRVVFSEEEILERL 177 (261)
T ss_pred HHHHHHCCCCCCCCccccCCcceEeecCCCCeEEeeeEEEECC-CCChhHhccCCCEEEEeeEcCCcceEeCCHHHHHHH
Confidence 9999985 555 666666555566666665543 4666776654 234445566532 2 111 22
Q ss_pred CCCCeEEEEE------------cCCC---ceEEEeeCCCCceEEEeccCCCCCC-------------CchHHHHHHHHHH
Q 029484 130 PSDALEVTAW------------TEDG---LIMAARHKKYKHLQGVQFHPESIIT-------------TEGKTIVRNFIKM 181 (192)
Q Consensus 130 ~~~~~~~~a~------------s~~~---~i~ai~~~~~~~~~g~QfHPE~~~~-------------~~~~~l~~~f~~~ 181 (192)
...+..++.. ++++ .|++|.+.+++ ++|++.||||... .+|..||++++++
T Consensus 178 ~~~~~i~~~Y~d~~g~~~~~p~NPNGs~~~IAGi~~~~G~-vlglMpHPEr~~~~~~~~~~~~~~~~~~g~~~f~~~~~~ 256 (261)
T PRK01175 178 IENDQIVFRYVDENGNYAGYPWNPNGSIYNIAGITNEKGN-VIGLMPHPERAFYGYQHPYWEKEEDYGDGKIFFDSLINY 256 (261)
T ss_pred HHCCcEEEEEeCCCCCCCCCCCCCCCChhhcceeECCCCC-EEEEcCCHHHhhchhhccccccccCCCchHHHHHHHHHH
Confidence 3334444333 2222 39999999986 9999999999843 2689999999876
Q ss_pred HH
Q 029484 182 IV 183 (192)
Q Consensus 182 ~~ 183 (192)
++
T Consensus 257 ~~ 258 (261)
T PRK01175 257 LR 258 (261)
T ss_pred HH
Confidence 54
|
|
| >cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=136.07 Aligned_cols=173 Identities=16% Similarity=0.209 Sum_probs=109.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc-------h--hHHHHHH-hCCCCCEEeeeHhHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-------I--SLQTVLE-LGPTVPLFGVCMGLQ 71 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~-------~--~~~~~~~-~~~~~PilGIC~G~Q 71 (192)
++.++|+.+|+++++++..+....+....++|+|||+||+....... . ..+.+++ .++++|+||||.|+|
T Consensus 14 ~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~Q 93 (238)
T cd01740 14 DMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGFQ 93 (238)
T ss_pred HHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcHHH
Confidence 46788999999999998743211111123899999999975432211 1 3344444 568999999999999
Q ss_pred HHHHH--hCCeeeecCCcccccc----ceeeEEcccCCCccccC--CCCccccccccccc---cccc---CCCCCCeEEE
Q 029484 72 CIGEA--FGGKIVRSPLGVMHGK----SSLVYYDEKGEDGLLAG--LSNPFTAGRYHSLV---IEKE---SFPSDALEVT 137 (192)
Q Consensus 72 ~l~~~--~gg~v~~~~~~~~~~~----~~~~~~~~~~~~~l~~~--~~~~~~~~~~H~~~---v~~~---~l~~~~~~~~ 137 (192)
+|+++ +++++...+....... +..+... ..++.+++. .+..+.++..|+++ .+.+ ++...+-.+
T Consensus 94 lL~~~gll~g~~~~~~~~~~~~~~~~~~v~~~v~-~~~si~t~~~~~g~~l~~~vaHgeG~~~~~~~~~~~l~~~~~i~- 171 (238)
T cd01740 94 ILVELGLLPGALIRNKGLKFICRWQNRFVTLRVE-NNDSPFTKGYMEGEVLRIPVAHGEGRFYADDETLAELEENGQIA- 171 (238)
T ss_pred HHHHcCCCccccccCCCCceeccccCceEEEEEc-CCCCceecCCCCCCEEEEEeECCceeeEcCHHHHHHHHHCCCEE-
Confidence 99997 8888877653332222 2333333 235566765 34567788888753 2111 111122111
Q ss_pred EE-------------cCCC---ceEEEeeCCCCceEEEeccCCCCCCC----------chHHHHHH
Q 029484 138 AW-------------TEDG---LIMAARHKKYKHLQGVQFHPESIITT----------EGKTIVRN 177 (192)
Q Consensus 138 a~-------------s~~~---~i~ai~~~~~~~~~g~QfHPE~~~~~----------~~~~l~~~ 177 (192)
.. ++++ .|++|.+++++ ++|++.||||...+ ++..+|++
T Consensus 172 ~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~Gr-vlglMphPer~~~~~q~~~~~~~~~~~~~F~~ 236 (238)
T cd01740 172 QYVDDDGNVTERYPANPNGSLDGIAGICNEDGR-VLGMMPHPERAVEPWQWERLLGGSDGLKLFRN 236 (238)
T ss_pred EEEcCCCCccccCCCCCCCChhcceEEEcCCCC-EEEEcCChHHcccccccccccCCCccHHHHhh
Confidence 11 2333 39999999986 99999999998655 46666665
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site |
| >KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-18 Score=133.21 Aligned_cols=166 Identities=17% Similarity=0.241 Sum_probs=109.4
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhc--cCCCeEEECCCCCCCCCcchhHHHHHH-------hCCCCCEEeeeHhHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSGISLQTVLE-------LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglii~GG~~~~~~~~~~~~~~~~-------~~~~~PilGIC~G~Q~ 72 (192)
|.++++++.|++|..+.++ .+++.+.. .-++|||++||.....++-+..+.+.. .+...||.|||+||.+
T Consensus 81 SYVK~aEsgGARViPli~n-epEe~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE~ 159 (340)
T KOG1559|consen 81 SYVKLAESGGARVIPLIYN-EPEEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFEL 159 (340)
T ss_pred HHHHHHHcCCceEEEEecC-CcHHHHHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhHHH
Confidence 5789999999999999986 45554432 268999999997777777666655542 2467999999999999
Q ss_pred HHHHhCCeeeecCCccccccceeeEEcc--cCCCccccCC--------CCcccccccccccccccCCCC-----CCeEEE
Q 029484 73 IGEAFGGKIVRSPLGVMHGKSSLVYYDE--KGEDGLLAGL--------SNPFTAGRYHSLVIEKESFPS-----DALEVT 137 (192)
Q Consensus 73 l~~~~gg~v~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~--------~~~~~~~~~H~~~v~~~~l~~-----~~~~~~ 137 (192)
|.....-.-......-............ +.+..+|..+ .....+++.|.+.+++..+.. .-|.++
T Consensus 160 lsmiISqnrdile~~d~vd~AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~Ls~FFnil 239 (340)
T KOG1559|consen 160 LSMIISQNRDILERFDAVDVASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNPALSSFFNIL 239 (340)
T ss_pred HHHHHhcChhHHHhhcccccccceeeecccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCHHHHHHHhhe
Confidence 9986541111111000000111111111 1123344444 344567899999997655432 347788
Q ss_pred EEcCCC----ceEEEeeCCCCceEEEeccCCCCCCC
Q 029484 138 AWTEDG----LIMAARHKKYKHLQGVQFHPESIITT 169 (192)
Q Consensus 138 a~s~~~----~i~ai~~~~~~~~~g~QfHPE~~~~~ 169 (192)
.++.|+ .|..++.+.+| ++|+|||||+...+
T Consensus 240 TT~~D~~~k~fvSTv~~~kYP-vtgfQWHPEKnafE 274 (340)
T KOG1559|consen 240 TTCTDGNSKTFVSTVESKKYP-VTGFQWHPEKNAFE 274 (340)
T ss_pred eeecCCCceEEEEeecceecc-ceeeeecCccCccc
Confidence 877666 38889999998 99999999998644
|
|
| >KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-18 Score=141.32 Aligned_cols=153 Identities=18% Similarity=0.284 Sum_probs=100.8
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCeeeecCCc-----cccccceeeE-Eccc---
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG-----VMHGKSSLVY-YDEK--- 101 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~~~~-----~~~~~~~~~~-~~~~--- 101 (192)
..|||+++||.|+..-.+.......+.++++|+||||+|||+.+..|.-++.-.... .+......+. .++.
T Consensus 363 ~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~ 442 (585)
T KOG2387|consen 363 SADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICLGMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKT 442 (585)
T ss_pred cCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeehhhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcc
Confidence 589999999999999999888777778899999999999999988543333222100 0000000000 0000
Q ss_pred ---------C-------CCc----cccCCCCccccccccccccccc---CCCCCCeEEEEEcCCCc-eEEEeeCCCCceE
Q 029484 102 ---------G-------EDG----LLAGLSNPFTAGRYHSLVIEKE---SFPSDALEVTAWTEDGL-IMAARHKKYKHLQ 157 (192)
Q Consensus 102 ---------~-------~~~----l~~~~~~~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~~-i~ai~~~~~~~~~ 157 (192)
. +++ |+.+. +...-..-|.|+|+++ .|...++..++.+.++. .+.++.+++|+++
T Consensus 443 ~mGgtMRLG~R~t~f~~~~s~~~kLYG~~-~~V~ERHRHRyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~fV 521 (585)
T KOG2387|consen 443 HMGGTMRLGSRRTVFQDKDSKLRKLYGNV-EFVDERHRHRYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFV 521 (585)
T ss_pred cccceeeecccceeeecCchHHHHHhCCc-hhhhhhhhcceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCCCCcee
Confidence 0 111 22221 1222335577888654 34557899999997765 8899999999999
Q ss_pred EEeccCCCCCCC-chHHHHHHHHHHHHH
Q 029484 158 GVQFHPESIITT-EGKTIVRNFIKMIVR 184 (192)
Q Consensus 158 g~QfHPE~~~~~-~~~~l~~~f~~~~~~ 184 (192)
|+|||||+.+.+ ...++|-..+.+...
T Consensus 522 g~QfHPE~~srp~kpsp~flGlv~as~~ 549 (585)
T KOG2387|consen 522 GVQFHPEFKSRPDKPSPLFLGLVAASCG 549 (585)
T ss_pred eeccCHHHhcCCCCCCcchhHhHHHHHh
Confidence 999999999887 556666665555443
|
|
| >COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-16 Score=115.68 Aligned_cols=157 Identities=21% Similarity=0.360 Sum_probs=99.4
Q ss_pred HHHHHhCC-CeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCC-----CcchhHHHHHHhCCCCCEEeeeHhHHHHHHHh
Q 029484 4 LKYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLELGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 4 ~~~l~~~g-~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~-----~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~ 77 (192)
.+.++.++ +++..++. .+++. .+||+|||||.+... +.+-+.........++|++|.|.|+-+|+...
T Consensus 16 ~~~l~~~~~~e~~~Vk~----~~dL~--~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLakei 89 (194)
T COG0311 16 LEALEKAGGAEVVEVKR----PEDLE--GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKEI 89 (194)
T ss_pred HHHHHhhcCCceEEEcC----HHHhc--cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhhh
Confidence 35678884 77777764 56776 799999999977641 22323333334678999999999999999743
Q ss_pred CC------------eeeecCCccccccceeeEEcccCCCccccCCCC--cccccccccccccccCCCCCCeEEEEEcCCC
Q 029484 78 GG------------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN--PFTAGRYHSLVIEKESFPSDALEVTAWTEDG 143 (192)
Q Consensus 78 gg------------~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~ 143 (192)
-+ +|.++.+++....+.... -++.+.. .+.+.+...-.|.+ ..++++++|+-++.
T Consensus 90 ~~~~~~~~Lg~mdi~V~RNAfGRQ~dSFe~~~--------di~~~~~~~~~~avFIRAP~I~~---vg~~V~vLa~l~~~ 158 (194)
T COG0311 90 LDGPEQPLLGLLDVTVRRNAFGRQVDSFETEL--------DIEGFGLPFPFPAVFIRAPVIEE---VGDGVEVLATLDGR 158 (194)
T ss_pred cCCCCCcccceEEEEEEccccccccccceeeE--------EeecccCCCcceEEEEEcceeeh---hcCcceEeeeeCCE
Confidence 32 333333333222221110 1111222 24446666666665 44579999988775
Q ss_pred ceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 029484 144 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 184 (192)
Q Consensus 144 ~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~ 184 (192)
++++ +.. +++|+.||||.+ ++.++.+.|++++.+
T Consensus 159 iVav-~qg---n~LatsFHPELT---~D~r~Heyf~~~v~~ 192 (194)
T COG0311 159 IVAV-KQG---NILATSFHPELT---DDTRLHEYFLDMVLG 192 (194)
T ss_pred EEEE-EeC---CEEEEecCcccc---CCccHHHHHHHHhhc
Confidence 5544 333 499999999997 555888888887764
|
|
| >PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.9e-17 Score=121.30 Aligned_cols=159 Identities=23% Similarity=0.377 Sum_probs=96.4
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC----cchhHHHHHH-hCCC-CCEEeeeHhHHHHHHHh
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLE-LGPT-VPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~----~~~~~~~~~~-~~~~-~PilGIC~G~Q~l~~~~ 77 (192)
.+.|+++|.+...++. .+++. ++||+|||||.+.... ...+...+++ ...+ +||+|+|.|+-+|+...
T Consensus 12 ~~~l~~lg~~~~~Vr~----~~dL~--~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~v 85 (188)
T PF01174_consen 12 IRMLERLGAEVVEVRT----PEDLE--GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKEV 85 (188)
T ss_dssp HHHHHHTTSEEEEE-S----GGGGT--T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEEE
T ss_pred HHHHHHcCCCeEEeCC----HHHHc--cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhhh
Confidence 3578899999977764 56666 7999999999765421 1123334444 3455 99999999999999832
Q ss_pred C-----------CeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceE
Q 029484 78 G-----------GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIM 146 (192)
Q Consensus 78 g-----------g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ 146 (192)
. -+|.++.+++....+..-. -+..+..++.+.+...-.|.+- ..+++.++++..++.++
T Consensus 86 ~~~~q~~Lg~ldi~V~RNafGrQ~~SFe~~l--------~i~~~~~~~~avFIRAP~I~~v-~~~~~v~vla~~~g~iV- 155 (188)
T PF01174_consen 86 EGQGQPLLGLLDITVRRNAFGRQLDSFEADL--------DIPGLGEPFPAVFIRAPVIEEV-GSPEGVEVLAELDGKIV- 155 (188)
T ss_dssp CSSCCTSS--EEEEEETTTTCSSSCEEEEEE--------EETTTESEEEEEESS--EEEEE---TTTEEEEEEETTEEE-
T ss_pred hhcccccccceeEEEEccccccchhcEEEEE--------EeecCCCcEEEEEcCCcEEEEe-ecccccccccccccceE-
Confidence 2 2555555554333222111 1122224677777777666540 01257888888876445
Q ss_pred EEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 147 AARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 147 ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
+++.. +++++-||||.+ .|+.++.+.|++++.
T Consensus 156 av~qg---n~latsFHPELT--~D~~r~H~yFl~~v~ 187 (188)
T PF01174_consen 156 AVRQG---NILATSFHPELT--DDDTRIHEYFLEMVV 187 (188)
T ss_dssp EEEET---TEEEESS-GGGS--STHCHHHHHHHHHHC
T ss_pred EEEec---CEEEEEeCCccc--CchhHHHHHHHHHhh
Confidence 55533 499999999995 444799999999875
|
The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A. |
| >PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.8e-16 Score=122.90 Aligned_cols=177 Identities=16% Similarity=0.201 Sum_probs=106.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc--h-----------hHHHHHH-hCC-CCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--I-----------SLQTVLE-LGP-TVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~--~-----------~~~~~~~-~~~-~~PilGIC 67 (192)
++.+++.+|++++.++..+.-..+....++|+|+|+||.+.-+... . ..+.+++ +++ +.|+||||
T Consensus 18 ~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIc 97 (259)
T PF13507_consen 18 TAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGIC 97 (259)
T ss_dssp HHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEEC
T ss_pred HHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEc
Confidence 5788999999999998643211222333899999999977654432 1 2344444 455 99999999
Q ss_pred HhHHHHHHH--hCC----------eeeecCCccccccceeeEEcccCCCccccCCCCccccccccccc---ccc----cC
Q 029484 68 MGLQCIGEA--FGG----------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLV---IEK----ES 128 (192)
Q Consensus 68 ~G~Q~l~~~--~gg----------~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~---v~~----~~ 128 (192)
.|||+|.++ +++ ++.++..+.....|..+..........++++ +.+.+.-.|++. +.. +.
T Consensus 98 NGfQiL~~~Gllp~~~~~~~~~~~~L~~N~s~~fe~rwv~~~v~~~s~~~~~~~~-~~~~lPiahgeG~~~~~~~~~l~~ 176 (259)
T PF13507_consen 98 NGFQILVELGLLPGGEIKDSEQSPALTPNASGRFESRWVNLVVNENSPSIFLRGL-EGIVLPIAHGEGRFYARDEATLEE 176 (259)
T ss_dssp HHHHHHCCCCCSTT------TT--EEE--TTSS-EEEEEEEEE--SSTTCCCTTT-TCEEEEEEESS-EEE-SSHHHHHH
T ss_pred hHhHHHHHhCcCCCccccccCCCcEEcCCCCCCeEEEEEEEEEecCCcceecCCC-CEEEEEEecCcceeecCCHHHHHH
Confidence 999999996 777 8888877766777777755444444445555 345555566532 211 12
Q ss_pred CCCCCeEEEEEcCC----------------CceEEEeeCCCCceEEEeccCCCCCCC--------------chHHHHHHH
Q 029484 129 FPSDALEVTAWTED----------------GLIMAARHKKYKHLQGVQFHPESIITT--------------EGKTIVRNF 178 (192)
Q Consensus 129 l~~~~~~~~a~s~~----------------~~i~ai~~~~~~~~~g~QfHPE~~~~~--------------~~~~l~~~f 178 (192)
|...+..++...++ ..|++|++.+++ ++|++.|||+...+ ++.++|++-
T Consensus 177 l~~~~qi~~~Y~~~~g~~a~~yP~NPNGS~~~IAGics~~Gr-vlglMpHPEr~~~~~~~~~~p~~~~~~s~~~~~F~n~ 255 (259)
T PF13507_consen 177 LEENGQIAFRYVDEEGNPAQEYPRNPNGSVNNIAGICSPDGR-VLGLMPHPERAFEPWQWPHWPREKWQESPWLRIFQNA 255 (259)
T ss_dssp HCCTTEEEEEECSTTSSB--STTTSSS--GGGEEEEE-TTSS-EEEESSBCCGTTCCCCSS-S--TT--B-TTHHHHHHH
T ss_pred HHhcCeEEEEEecCCCCcccCCCCCCCCCccceeEEEcCCCC-EEEEcCChHHhCchhhcCCCCccccCCChHHHHHHHH
Confidence 33344444443322 249999999986 99999999998532 256677776
Q ss_pred HHH
Q 029484 179 IKM 181 (192)
Q Consensus 179 ~~~ 181 (192)
+++
T Consensus 256 ~~w 258 (259)
T PF13507_consen 256 VEW 258 (259)
T ss_dssp HH-
T ss_pred hhc
Confidence 654
|
|
| >KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.1e-16 Score=124.13 Aligned_cols=164 Identities=19% Similarity=0.301 Sum_probs=109.9
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch------hHHHHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~------~~~~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
||..+++.+|+++.-+.. +.++. +.|-+|++| .|+...... +.+-+++ +++++|++|||.|.|.|.
T Consensus 16 si~nal~hlg~~i~~v~~----P~DI~--~a~rLIfPG-VGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF 88 (541)
T KOG0623|consen 16 SIRNALRHLGFSIKDVQT----PGDIL--NADRLIFPG-VGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVGLQALF 88 (541)
T ss_pred HHHHHHHhcCceeeeccC----chhhc--cCceEeecC-cccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHh
Confidence 577889999999988864 34555 667788875 455432221 2344444 679999999999999998
Q ss_pred H------------HhCCeeeecC---CccccccceeeEEcccCCCccccCCCCccccccccccccccc--CCCCCCeEEE
Q 029484 75 E------------AFGGKIVRSP---LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKE--SFPSDALEVT 137 (192)
Q Consensus 75 ~------------~~gg~v~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~--~l~~~~~~~~ 137 (192)
. .+.|.+.+.. ...++.+|+.-... .++.+|...|. -.+++.|+|..... .+.+.+|++
T Consensus 89 ~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNsc~v~--sd~effg~~p~-~~~YFVHSyl~~ek~~~len~~wki- 164 (541)
T KOG0623|consen 89 DGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNSCQVG--SDSEFFGDVPN-RHVYFVHSYLNREKPKSLENKDWKI- 164 (541)
T ss_pred cccccCCCcCcccccccceecccCCCCcCCcccccccccC--CcccccccCCC-ceEEEEeeecccccccCCCCCCceE-
Confidence 7 2334444432 12456667654433 34456665554 45788899854322 345566765
Q ss_pred EEcCCC---ceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHH
Q 029484 138 AWTEDG---LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 138 a~s~~~---~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
|+...+ .|.++.- ++++++|||||++ ++.|...+++|+.
T Consensus 165 at~kYG~E~Fi~ai~k---nN~~AtQFHPEKS-G~aGL~vl~~FL~ 206 (541)
T KOG0623|consen 165 ATCKYGSESFISAIRK---NNVHATQFHPEKS-GEAGLSVLRRFLH 206 (541)
T ss_pred eeeccCcHHHHHHHhc---CceeeEecccccc-cchhHHHHHHHHh
Confidence 555444 3666652 3699999999997 8899999999998
|
|
| >TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=126.36 Aligned_cols=177 Identities=14% Similarity=0.150 Sum_probs=114.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-------HHHH--hccCCCeEEECCCCCCCCCc---chh----------HHHHHH-hCC
Q 029484 3 FLKYMGELGYHFEVYRNDELT-------VEEL--KRKNPRGVLISPGPGAPQDS---GIS----------LQTVLE-LGP 59 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-------~~~~--~~~~~dglii~GG~~~~~~~---~~~----------~~~~~~-~~~ 59 (192)
.+.+++.+|+++..++..+.. .+++ ...++++|+++||.+.-+.. +.| .+.+.+ +++
T Consensus 994 ~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~ 1073 (1239)
T TIGR01857 994 SAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLAR 1073 (1239)
T ss_pred HHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhC
Confidence 467888999999888765422 1222 12389999999998776544 123 222333 468
Q ss_pred CCCEEeeeHhHHHHHHH--hCC-----------eeeecCCccccccceeeEEcccCCCccccCCC--Cccccccccccc-
Q 029484 60 TVPLFGVCMGLQCIGEA--FGG-----------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS--NPFTAGRYHSLV- 123 (192)
Q Consensus 60 ~~PilGIC~G~Q~l~~~--~gg-----------~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~H~~~- 123 (192)
+.++||||.|||+|++. +.+ ++.++..+++...|..+.+.. .+++++.++. ..+.+...|+.+
T Consensus 1074 d~~~LGICNGfQ~L~~lGLlP~~~~~~~~~~~p~l~~N~s~rf~~r~v~~~v~~-~~s~~~~~~~~g~~~~ipvaHgEGr 1152 (1239)
T TIGR01857 1074 DGLILGICNGFQALVKSGLLPYGNIEAANETSPTLTYNDINRHVSKIVRTRIAS-TNSPWLSGVSVGDIHAIPVSHGEGR 1152 (1239)
T ss_pred CCcEEEechHHHHHHHcCCCcCccccccccCCceeeecCCCCeEEeeeEEEECC-CCChhHhcCCCCCEEEEEeEcCCcc
Confidence 99999999999999996 322 455555455555566665543 4677887664 456777778643
Q ss_pred --cccc---CCCCCCeEEEEE-------------cCCC---ceEEEeeCCCCceEEEeccCCCCCC--------CchHHH
Q 029484 124 --IEKE---SFPSDALEVTAW-------------TEDG---LIMAARHKKYKHLQGVQFHPESIIT--------TEGKTI 174 (192)
Q Consensus 124 --v~~~---~l~~~~~~~~a~-------------s~~~---~i~ai~~~~~~~~~g~QfHPE~~~~--------~~~~~l 174 (192)
.+.+ +|..++...+-+ ++++ .|++|.+.+++ ++|++.||||... .++..|
T Consensus 1153 f~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~NPNGS~~~IaGi~s~dGr-vlg~MpHpER~~~~~~~~~~g~~~~~i 1231 (1239)
T TIGR01857 1153 FVASDEVLAELRENGQIATQYVDFNGKPSMDSKYNPNGSSLAIEGITSPDGR-IFGKMGHSERYGDGLFKNIPGNKDQHL 1231 (1239)
T ss_pred eecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCCCCCCChhhhhEeECCCCC-EEEECCCcccccCcccCCCCchhhhHH
Confidence 1111 122233333332 2233 39999999986 9999999999842 245889
Q ss_pred HHHHHHH
Q 029484 175 VRNFIKM 181 (192)
Q Consensus 175 ~~~f~~~ 181 (192)
|++.+++
T Consensus 1232 F~~~v~y 1238 (1239)
T TIGR01857 1232 FASGVKY 1238 (1239)
T ss_pred HHHHHhh
Confidence 9988754
|
This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP. |
| >TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-12 Score=120.50 Aligned_cols=163 Identities=16% Similarity=0.180 Sum_probs=106.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc--h-h----------HHHHHH-h-CCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--I-S----------LQTVLE-L-GPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~--~-~----------~~~~~~-~-~~~~PilGIC 67 (192)
.+.+|+.+|+++..++..+.........+|++|+++||.+.-+..+ . | .+.+.+ + .++.++||||
T Consensus 1072 ~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiC 1151 (1310)
T TIGR01735 1072 MAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVC 1151 (1310)
T ss_pred HHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEec
Confidence 4678899999998888654333332223899999999977654432 2 2 222333 3 6789999999
Q ss_pred HhHHHHH-H--HhCCe-----eeecCCccccccceeeEEcccCCCccccCCC-Cccccccccccc---cccc----CCCC
Q 029484 68 MGLQCIG-E--AFGGK-----IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLV---IEKE----SFPS 131 (192)
Q Consensus 68 ~G~Q~l~-~--~~gg~-----v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~---v~~~----~l~~ 131 (192)
.|||+|+ + .+++. +.++........|..+.+.. .++.+++++. ..+.++-.|+.. +..+ .+..
T Consensus 1152 NGfQ~L~~~~gllp~~~~~p~l~~N~s~~fe~r~~~~~v~~-s~s~~~~~~~g~~l~~~vaHgEGr~~~~~~~~~~~l~~ 1230 (1310)
T TIGR01735 1152 NGCQMLSNLLEWIPGTENWPHFVRNNSERFEARVASVRVGE-SPSIMLRGMAGSRLPVAVAHGEGYAAFSSPELQAQADA 1230 (1310)
T ss_pred HHHHHHHHHhCcCCCCCCCceeeecCCCCeEEeeeEEEECC-CCChhhhhcCCCEEEEEeEcCCCCeeeCCHHHHHHHHh
Confidence 9999999 4 24443 66666666666777777664 4677887765 346667777542 2211 1222
Q ss_pred CCeEEEEE-------------cCCC---ceEEEeeCCCCceEEEeccCCCCC
Q 029484 132 DALEVTAW-------------TEDG---LIMAARHKKYKHLQGVQFHPESII 167 (192)
Q Consensus 132 ~~~~~~a~-------------s~~~---~i~ai~~~~~~~~~g~QfHPE~~~ 167 (192)
.+...+-. ++++ .|++|...+++ ++|++.||||..
T Consensus 1231 ~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IaGi~s~dGr-vl~~MpHPEr~~ 1281 (1310)
T TIGR01735 1231 SGLAALRYIDDDGNPTEAYPLNPNGSPGGIAGITSCDGR-VTIMMPHPERVF 1281 (1310)
T ss_pred CCeEEEEEeCCCCCccCCCCCCCCCChhcceEeECCCCC-EEEEcCCHHHhh
Confidence 33333322 1223 39999999987 999999999985
|
This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit. |
| >PLN03206 phosphoribosylformylglycinamidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7e-12 Score=117.44 Aligned_cols=163 Identities=18% Similarity=0.176 Sum_probs=102.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC--cch-h----------HHHHHH-h-CCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--SGI-S----------LQTVLE-L-GPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~--~~~-~----------~~~~~~-~-~~~~PilGIC 67 (192)
.+.+|+.+|+++..++..+.........+++||+++||.+.-+. .+. | .+.+.+ + .++.++||||
T Consensus 1054 ~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGIC 1133 (1307)
T PLN03206 1054 MAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVC 1133 (1307)
T ss_pred HHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEc
Confidence 46789999999988876532222222238999999999865433 332 1 223333 3 4589999999
Q ss_pred HhHHHHHHH--hCCe----------------eeecCCccccccceeeEEcccCCCccccCCC-Ccccccccccccc---c
Q 029484 68 MGLQCIGEA--FGGK----------------IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLVI---E 125 (192)
Q Consensus 68 ~G~Q~l~~~--~gg~----------------v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~v---~ 125 (192)
.|||+|++. +++. +.++..+.....|..+.+. ..++.++.++. ..+.++-.|++.- .
T Consensus 1134 NGfQiL~~lgllPg~~~~~~~~~~~~e~~p~l~~N~s~rfesr~v~v~V~-~s~si~l~~~~G~~l~i~vaHgEGr~~~~ 1212 (1307)
T PLN03206 1134 NGCQLMALLGWVPGPQVGGGLGAGGDPSQPRFVHNESGRFECRFTSVTIE-DSPAIMLKGMEGSTLGVWAAHGEGRAYFP 1212 (1307)
T ss_pred HHHHHHHHcCCCCCCccccccccccccCCceeeecCCCCeEEeceEEEEC-CCCChhhcccCCCEEEEEEEcCCCCeecC
Confidence 999999995 3321 3444444555556666663 35677787665 3466666776431 2
Q ss_pred cc----CCCCCCeEEEEE-------------cCCC---ceEEEeeCCCCceEEEeccCCCCC
Q 029484 126 KE----SFPSDALEVTAW-------------TEDG---LIMAARHKKYKHLQGVQFHPESII 167 (192)
Q Consensus 126 ~~----~l~~~~~~~~a~-------------s~~~---~i~ai~~~~~~~~~g~QfHPE~~~ 167 (192)
.+ .|..++...+-+ ++++ .|++|+..+++ ++|++.||||..
T Consensus 1213 ~~~~l~~l~~~gqva~rY~d~~g~~t~~yP~NPNGS~~~IAGi~s~dGR-vlgmMpHPER~~ 1273 (1307)
T PLN03206 1213 DESVLDEVLKSNLAPVRYCDDDGEPTEQYPFNPNGSPLGIAALCSPDGR-HLAMMPHPERCF 1273 (1307)
T ss_pred CHHHHHHHHhcCeEEEEEeCCCCCccCCCCCCCCCChhhceeeECCCCC-EEEEcCCHHHhh
Confidence 11 222233333332 1222 39999999987 999999999985
|
|
| >PRK05297 phosphoribosylformylglycinamidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-11 Score=117.09 Aligned_cols=164 Identities=16% Similarity=0.227 Sum_probs=105.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch---h----------HHHHHH-h-CCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI---S----------LQTVLE-L-GPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~---~----------~~~~~~-~-~~~~PilGIC 67 (192)
.+.+++.+|+++..++..+.........++++++++||.+.-+..+. | .+.+.+ + .++.++||||
T Consensus 1052 ~~~Af~~aG~~~~~v~~~dl~~~~~~l~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiC 1131 (1290)
T PRK05297 1052 MAAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVC 1131 (1290)
T ss_pred HHHHHHHcCCCeEEEEeecCcCCCCChhhCcEEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEc
Confidence 46789999999988876543322212238999999999776554332 2 223333 3 5789999999
Q ss_pred HhHHHHHHH--h-CC-----eeeecCCccccccceeeEEcccCCCccccCCC-Cccccccccccc---cccc---CCCCC
Q 029484 68 MGLQCIGEA--F-GG-----KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLV---IEKE---SFPSD 132 (192)
Q Consensus 68 ~G~Q~l~~~--~-gg-----~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~---v~~~---~l~~~ 132 (192)
.|||+|.+. + .+ ++.++..+.....|..+.+.. .+++++.++. ..+.++-.|++. ++.+ .|...
T Consensus 1132 NGfQ~L~~lg~l~p~~~~~p~l~~N~s~rfesr~~~~~v~~-~~s~~~~~~~g~~l~~~vaHgeGr~~~~~~~~~~l~~~ 1210 (1290)
T PRK05297 1132 NGCQMMSNLKEIIPGAEHWPRFVRNRSEQFEARFSLVEVQE-SPSIFLQGMAGSRLPIAVAHGEGRAEFPDAHLAALEAK 1210 (1290)
T ss_pred HHHHHHHHhCCccCCCCCCCeEeecCCCCeEEeeeEEEECC-CCChhHhhcCCCEEEEEEEcCcccEEcCHHHHHHHHHC
Confidence 999999996 1 12 355555555566666666653 4777887765 346666677633 2211 12223
Q ss_pred CeEEEEE-------------cCCC---ceEEEeeCCCCceEEEeccCCCCCC
Q 029484 133 ALEVTAW-------------TEDG---LIMAARHKKYKHLQGVQFHPESIIT 168 (192)
Q Consensus 133 ~~~~~a~-------------s~~~---~i~ai~~~~~~~~~g~QfHPE~~~~ 168 (192)
+...+-. ++++ .|++|.+.+++ ++|++.||||...
T Consensus 1211 ~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IaGi~s~dGr-vlglMpHPEr~~~ 1261 (1290)
T PRK05297 1211 GLVALRYVDNHGQVTETYPANPNGSPNGITGLTTADGR-VTIMMPHPERVFR 1261 (1290)
T ss_pred CcEEEEEECCCCCcccCCCCCCCCChhcceEeECCCCC-EEEEcCChHHhcc
Confidence 3332222 2333 39999999987 9999999999853
|
|
| >PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: |
Back alignment and domain information |
|---|
Probab=99.20 E-value=3.7e-11 Score=96.47 Aligned_cols=153 Identities=18% Similarity=0.234 Sum_probs=91.3
Q ss_pred HHHHhccCCCeEEECCCCCCCCCc--chhHHHH---HH--hCCCCCEEeeeHhHHH-HHHHhCCeeeecCCcccccccee
Q 029484 24 VEELKRKNPRGVLISPGPGAPQDS--GISLQTV---LE--LGPTVPLFGVCMGLQC-IGEAFGGKIVRSPLGVMHGKSSL 95 (192)
Q Consensus 24 ~~~~~~~~~dglii~GG~~~~~~~--~~~~~~~---~~--~~~~~PilGIC~G~Q~-l~~~~gg~v~~~~~~~~~~~~~~ 95 (192)
.+++....+||+||+|-|--..+. -.+...+ .+ ...-.+.|.||+|.|. |...+|..-...+.+. .|....
T Consensus 91 ~~~i~~~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~Kl-fGVf~~ 169 (298)
T PF04204_consen 91 FDEIKDRKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPEKL-FGVFEH 169 (298)
T ss_dssp HHHCTTS-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEEEE-EEEEEE
T ss_pred HHHHhhCCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCCcc-eeceee
Confidence 344455589999999987764332 2332322 22 2456899999999999 6777887777766332 444332
Q ss_pred eEEcccCCCccccCCCCcccccccccccccccCC-CCCCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCCchHHH
Q 029484 96 VYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTI 174 (192)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l 174 (192)
... ...++|++++++.|.+.++..-.+..+.+ ...+++++|.|++.-+..+..+++. .+=+|.|||+. ...|
T Consensus 170 ~~~--~~~~pLl~Gfdd~f~~PhSR~t~i~~~~i~~~~~L~vLa~s~~~G~~l~~~~d~r-~vfi~GH~EYd----~~TL 242 (298)
T PF04204_consen 170 RVL--DPDHPLLRGFDDTFFAPHSRYTEIDRDDIKKAPGLEVLAESEEAGVFLVASKDGR-QVFITGHPEYD----ADTL 242 (298)
T ss_dssp EES---SS-GGGTT--SEEEEEEEEEEE--HHHHCT-TTEEEEEEETTTEEEEEEECCCT-EEEE-S-TT------TTHH
T ss_pred ecc--CCCChhhcCCCccccCCcccccCCCHHHHhcCCCcEEEeccCCcceEEEEcCCCC-EEEEeCCCccC----hhHH
Confidence 222 24789999999888887777666655444 4578999999998888888888876 88899999994 5556
Q ss_pred HHHHHHHHHH
Q 029484 175 VRNFIKMIVR 184 (192)
Q Consensus 175 ~~~f~~~~~~ 184 (192)
-+++.+.+.+
T Consensus 243 ~~EY~RD~~~ 252 (298)
T PF04204_consen 243 AKEYRRDLAK 252 (298)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 6666655543
|
Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A. |
| >cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS) | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.5e-11 Score=88.74 Aligned_cols=108 Identities=15% Similarity=0.183 Sum_probs=73.1
Q ss_pred HhccCCCeEEECCCCCCCCCcc--hhHHHH---HH--hCCCCCEEeeeHhHHHHHHHhCCee-eecCCccccccceeeEE
Q 029484 27 LKRKNPRGVLISPGPGAPQDSG--ISLQTV---LE--LGPTVPLFGVCMGLQCIGEAFGGKI-VRSPLGVMHGKSSLVYY 98 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~--~~~~~~---~~--~~~~~PilGIC~G~Q~l~~~~gg~v-~~~~~~~~~~~~~~~~~ 98 (192)
+...+|||+||+|.|-...+.. .+.+.+ .+ .....|+||||+|+|....+++|.. ..++.+. .|.......
T Consensus 58 i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K~-~Gvf~~~~~ 136 (175)
T cd03131 58 IRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEKI-FGVFPHTIL 136 (175)
T ss_pred ccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCCCce-EEEEEeeec
Confidence 4455899999999988654332 222222 22 2577999999999999999999886 4455333 443332222
Q ss_pred cccCCCccccCCCCcccccccccccccccCC-CCCCeEEEE
Q 029484 99 DEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTA 138 (192)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a 138 (192)
. .++|++++++.|.+..+|...|..+.+ ..+++++++
T Consensus 137 ~---~hpL~~g~~d~F~~PhSR~~~v~~~~~~~~~~l~il~ 174 (175)
T cd03131 137 E---PHPLLRGLDDGFDVPHSRYAEVDREDIEEAAGLTILA 174 (175)
T ss_pred C---CCccccCCCCceeecCcccccCCHHHHhhCCCCEEcc
Confidence 2 689999999999999999888875433 234555553
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti |
| >TIGR01001 metA homoserine O-succinyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.1e-10 Score=88.60 Aligned_cols=151 Identities=19% Similarity=0.207 Sum_probs=102.4
Q ss_pred HHHHhccCCCeEEECCCCCCCC--CcchhHHHH---HH--hCCCCCEEeeeHhHHH-HHHHhCCeeeecCCcccccccee
Q 029484 24 VEELKRKNPRGVLISPGPGAPQ--DSGISLQTV---LE--LGPTVPLFGVCMGLQC-IGEAFGGKIVRSPLGVMHGKSSL 95 (192)
Q Consensus 24 ~~~~~~~~~dglii~GG~~~~~--~~~~~~~~~---~~--~~~~~PilGIC~G~Q~-l~~~~gg~v~~~~~~~~~~~~~~ 95 (192)
.+++...++||+||+|-|---. +.-.+...+ .+ -..-...|.||+|.|. |...+|-.-...+.+. .|....
T Consensus 92 f~~ik~~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~Kl-fGVf~h 170 (300)
T TIGR01001 92 FEAVKDRKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPEKL-SGVYKH 170 (300)
T ss_pred HHHHhcCCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCCce-EEeecC
Confidence 4556556899999999877543 332332332 22 2466889999999999 5555776655555332 443332
Q ss_pred eEEcccCCCccccCCCCcccccccccccccccCCCC-CCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCCchHHH
Q 029484 96 VYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPS-DALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTI 174 (192)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~-~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l 174 (192)
... ..++|++++++.|.+.++..-.+..+.+.. +++++++.|++.-+..+..+++. -+=++.|||+ +...|
T Consensus 171 ~~~---~~~pL~rGfdd~f~~PhSR~t~i~~~~i~~~~~L~vla~s~e~G~~l~~s~d~r-~vfi~GH~EY----d~~TL 242 (300)
T TIGR01001 171 DIA---PDSLLLRGFDDFFLAPHSRYADFDAEDIDKVTDLEILAESDEAGVYLAANKDER-NIFVTGHPEY----DAYTL 242 (300)
T ss_pred ccC---CCCccccCCCCccccCCCCCCCCCHHHHhcCCCCeEEecCCCcceEEEEcCCCC-EEEEcCCCcc----ChhHH
Confidence 222 368899999988888777655565443322 67999999988887788888875 6669999999 45666
Q ss_pred HHHHHHHHH
Q 029484 175 VRNFIKMIV 183 (192)
Q Consensus 175 ~~~f~~~~~ 183 (192)
-+++.+.+.
T Consensus 243 ~~EY~RD~~ 251 (300)
T TIGR01001 243 HQEYVRDIG 251 (300)
T ss_pred HHHHHHHHH
Confidence 676665554
|
The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames. |
| >KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.1e-10 Score=81.05 Aligned_cols=65 Identities=14% Similarity=0.284 Sum_probs=44.2
Q ss_pred CCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC----cchhHHHHHH-hC-CCCCEEeeeHhHHHHHHHhCC
Q 029484 11 GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLE-LG-PTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 11 g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~----~~~~~~~~~~-~~-~~~PilGIC~G~Q~l~~~~gg 79 (192)
++++++.++ ...+++. ++|++||+||.+...- ...+...+.+ .. ..+|++|.|.||-.|+..+.+
T Consensus 40 ~Ik~~~~tV--KT~~D~a--q~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~ql~n 110 (226)
T KOG3210|consen 40 EIKLSVMTV--KTKNDLA--QCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQLSN 110 (226)
T ss_pred eEEEEEEee--cCHHHHh--hCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhhhcC
Confidence 566777776 3466777 8999999999775421 1112333444 23 459999999999999985543
|
|
| >PHA03366 FGAM-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=103.28 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=101.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch---h----------HHHHHH-h-CCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI---S----------LQTVLE-L-GPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~---~----------~~~~~~-~-~~~~PilGIC 67 (192)
.+.+|+.+|+++..++..+...... ..+|+||+++||.+.-+..+. | .+.+.+ + .++.++||||
T Consensus 1045 ~~~Af~~aGf~~~~v~~~dL~~~~~-l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiC 1123 (1304)
T PHA03366 1045 LLAAFTNAGFDPYPVSIEELKDGTF-LDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCG 1123 (1304)
T ss_pred HHHHHHHcCCceEEEEeecCCCCCc-cccceEEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeC
Confidence 4678899999999888755433332 238999999999887654432 2 233333 3 4689999999
Q ss_pred H-hHHHHHHH--h-----------------CCeeeecCCccccccceeeEEcccCCCccccCCCC-ccccccccccc---
Q 029484 68 M-GLQCIGEA--F-----------------GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN-PFTAGRYHSLV--- 123 (192)
Q Consensus 68 ~-G~Q~l~~~--~-----------------gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~H~~~--- 123 (192)
. |||+|++. + ..++.++..+.....|..+.+....++.+++++.. .+.++..|.+.
T Consensus 1124 N~G~Q~L~~lgll~~~~~~~~p~g~i~~~~~~~l~~N~s~rfesr~~~v~i~~~s~Si~l~~~~Gs~lP~w~~g~~~~~~ 1203 (1304)
T PHA03366 1124 ELGCQILFALKAVGSTAPSPVPGTETEEQWPITLEPNASGLYESRWLNFYIPETTKSVALRPLRGSVLPCWAQGTHLGFR 1203 (1304)
T ss_pred cHHHHHHHHcCCccCCccccccccccccCCCCeEeeeCCCCeEeeceEEEeCCCCCCccccccCCCCCCEEeCCCccccc
Confidence 8 99999984 3 23455555555566676666665356667766642 23333222220
Q ss_pred cccc----CCCCCCeEEEEE----------------cCC--CceEEEeeCCCCceEEEeccCCCCC
Q 029484 124 IEKE----SFPSDALEVTAW----------------TED--GLIMAARHKKYKHLQGVQFHPESII 167 (192)
Q Consensus 124 v~~~----~l~~~~~~~~a~----------------s~~--~~i~ai~~~~~~~~~g~QfHPE~~~ 167 (192)
...+ .+...+...+-. +++ ..|++|+..+++ ++|+++|||+..
T Consensus 1204 ~~~~~~~~~l~~~~~ia~~Y~d~~~~~g~~t~~yP~NPNGS~~IaGi~s~dGR-~l~mMphPer~~ 1268 (1304)
T PHA03366 1204 YPNDGMEYILRNSGQIAATFHGADVDPGNPARHYPRNPTGNSNVAGLCSADGR-HLALLFDPSLSF 1268 (1304)
T ss_pred cCCHHHHHHHHhCCcEEEEEeCCCCCcCccccCCCCCCCcCcceeeEECCCCC-EEEecCCHHHhh
Confidence 1110 111122222111 111 349999999987 999999999985
|
|
| >PRK06278 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=93.01 Aligned_cols=70 Identities=19% Similarity=0.377 Sum_probs=48.1
Q ss_pred cHHHHHHhCCC-eEEEEeCCCCCHHHHhccCCCeEEECCCCCC-CCCc-chhHHHHHHhCCCCCEEeeeHhHHHHHHHh
Q 029484 2 TFLKYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGA-PQDS-GISLQTVLELGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 2 ~l~~~l~~~g~-~~~v~~~~~~~~~~~~~~~~dglii~GG~~~-~~~~-~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~ 77 (192)
|..+.++.+|. .+.++... +.+++. ++|+|||+||.-. ..+. ..+.+.+++. ++||||||.|||||++..
T Consensus 10 sv~~al~~lg~~~~~vv~~~--~~~~l~--~~D~lILPGG~~~~~~~l~~~l~~~i~~~--g~pvlGICgG~QmLg~~~ 82 (476)
T PRK06278 10 GSLPCFENFGNLPTKIIDEN--NIKEIK--DLDGLIIPGGSLVESGSLTDELKKEILNF--DGYIIGICSGFQILSEKI 82 (476)
T ss_pred hHHHHHHHhcCCCcEEEEeC--ChHHhc--cCCEEEECCCchhhcchHHHHHHHHHHHc--CCeEEEEcHHHHhccccc
Confidence 66788888886 67776542 356666 8999999997421 1111 1233334444 899999999999999975
|
|
| >cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-09 Score=82.01 Aligned_cols=70 Identities=19% Similarity=0.314 Sum_probs=47.8
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC-----cchhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-----SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~-----~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
.+.|+++|++++++... ..+++. ++|+|||+||...... ...+.+.+++ .++++||+|||.|+|+|.+.+
T Consensus 17 ~~~l~~~G~~v~~~s~~--~~~~l~--~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~~ 92 (198)
T cd03130 17 LELLEAAGAELVPFSPL--KDEELP--DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGESL 92 (198)
T ss_pred HHHHHHCCCEEEEECCC--CCCCCC--CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHHh
Confidence 46788999999988641 112333 5999999998433210 0112344444 567899999999999999964
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB. |
| >TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-09 Score=100.73 Aligned_cols=162 Identities=13% Similarity=0.178 Sum_probs=97.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch---h----------HHHHHH-h-CCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI---S----------LQTVLE-L-GPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~---~----------~~~~~~-~-~~~~PilGIC 67 (192)
.+.+++.+|+++..++..+...... ..+++||+++||.+.-+..+. | .+.+.+ + .++.++||||
T Consensus 946 ~~~Af~~aGf~~~~v~~~dl~~~~~-l~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiC 1024 (1202)
T TIGR01739 946 LLAALTNAGFDPRIVSITELKKTDF-LDTFSGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFG 1024 (1202)
T ss_pred HHHHHHHcCCceEEEEeccCCCCCc-hhheEEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeC
Confidence 5678999999999888755332221 128999999998776543321 2 223333 3 4689999999
Q ss_pred H-hHHHHHHH--hC-----------------CeeeecCCccccccceeeEEcccCCCccccCCCCc-ccccccccc----
Q 029484 68 M-GLQCIGEA--FG-----------------GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNP-FTAGRYHSL---- 122 (192)
Q Consensus 68 ~-G~Q~l~~~--~g-----------------g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~H~~---- 122 (192)
. |||+|+.. ++ .++.++..+.....|..+.+....++.+++++... +.++. |+.
T Consensus 1025 N~G~Q~L~~lg~l~~~~~~~~~~~~~~~~~~~~l~~N~s~~fesr~~~v~i~~~s~si~~~~~~g~~lp~wv-~g~~~g~ 1103 (1202)
T TIGR01739 1025 ELGCQLLLALNIVGYTQSSPFITVPTEVQEPPRLEKNASGLYESRWLNFYIPETTKSVFLRPLRGSVLPCWA-QGTHLGL 1103 (1202)
T ss_pred cHHHHHHHHcCCCcCCcccccccccccccCCceeeecCCCCeEEeeeEEEeCCCCCChhhhhcCCCEeccce-EeccCCc
Confidence 8 99999995 21 12333444445555666666543566677766533 33332 322
Q ss_pred ccccc----CCCCCCeEEEEE----------------cCC--CceEEEeeCCCCceEEEeccCCCCC
Q 029484 123 VIEKE----SFPSDALEVTAW----------------TED--GLIMAARHKKYKHLQGVQFHPESII 167 (192)
Q Consensus 123 ~v~~~----~l~~~~~~~~a~----------------s~~--~~i~ai~~~~~~~~~g~QfHPE~~~ 167 (192)
.+..+ ++...+...+-. +++ ..|++|+..+++ ++|+++|||+..
T Consensus 1104 ~~~~~~~~~~l~~~g~va~~Y~d~~~~~g~~a~~yP~NPNGS~~IAGi~s~dGR-~l~lMphPer~~ 1169 (1202)
T TIGR01739 1104 YHPDDGVEEELENSGQIASTFHGNSPSSGLPATNYPRNPSGGSNVAGLCSADGR-HLALLIDPSLSF 1169 (1202)
T ss_pred EECCHHHHHHHHhCCeEEEEEeCCCCCCCccccCCCCCCCcCcceeeEECCCCC-EEEecCCHHHhh
Confidence 22111 122222222221 111 259999999987 999999999985
|
This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model. |
| >cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ) | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.6e-10 Score=84.20 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=51.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-----chhHHHHHH-hCCCCCEEeeeHhHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GISLQTVLE-LGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-----~~~~~~~~~-~~~~~PilGIC~G~Q~l~~ 75 (192)
++.++++..|+++++++..+ + +. ++|+|||+||.....+. ..+.+.+++ .++++||||||.|+|+|++
T Consensus 14 ~l~~~~~~~G~~~~~~~~~~-~---~~--~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~ 87 (194)
T cd01750 14 DLDPLAREPGVDVRYVEVPE-G---LG--DADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQMLGK 87 (194)
T ss_pred HHHHHHhcCCceEEEEeCCC-C---CC--CCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhh
Confidence 57788899999999998642 1 23 78999999997332211 113334444 5689999999999999999
Q ss_pred HhC
Q 029484 76 AFG 78 (192)
Q Consensus 76 ~~g 78 (192)
.+.
T Consensus 88 ~~~ 90 (194)
T cd01750 88 YIV 90 (194)
T ss_pred hcc
Confidence 873
|
Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ. |
| >TIGR00379 cobB cobyrinic acid a,c-diamide synthase | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.2e-07 Score=78.10 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=49.2
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-----chhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-----~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
.+.|++.|+++..++.- ..+++. ++|+|+|+||.....+. ..+.+.+++ .+++.||+|+|.|+|+|++.+
T Consensus 263 ~~~L~~~g~~~~~~~~~--~d~~l~--~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 263 LDALTHNAAELVPFSPL--EDTELP--DVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred HHHHHHCCCEEEEECCc--cCCCCC--CCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 45688899999888651 112333 78999999997533221 113344544 568899999999999999986
|
This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation. |
| >PRK01077 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-06 Score=73.92 Aligned_cols=70 Identities=17% Similarity=0.295 Sum_probs=49.5
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCC-----CcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~-----~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
.+.|++.|+++..++.- ..+++. ++|+|||+||..... ....+.+.+++ .++++||+|||.|+|+|.+.+
T Consensus 264 ~~~L~~~g~~~~~~~~~--~~~~l~--~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 264 LELLRAAGAELVFFSPL--ADEALP--DCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred HHHHHHCCCEEEEeCCc--CCCCCC--CCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 36688899999888641 122333 899999999964321 11223455554 568899999999999999986
|
|
| >PRK00784 cobyric acid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=4e-07 Score=79.06 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=48.4
Q ss_pred HHHHh-CCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch------hHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 5 KYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 5 ~~l~~-~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~------~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+.|+. +|+++++++. .+++. ++|+|||+||.....+ .. +.+.+++ +++++||||||.|+|+|++.
T Consensus 269 ~~l~~~~g~~v~~~s~----~~~l~--~~d~lilpGg~~~~~~-~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~ 341 (488)
T PRK00784 269 DPLRAEPGVDVRYVRP----GEPLP--DADLVILPGSKNTIAD-LAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRR 341 (488)
T ss_pred HHHhhcCCCeEEEECC----ccccc--cCCEEEECCccchHHH-HHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhh
Confidence 45665 8999999864 23444 7899999999744332 22 3344544 56899999999999999998
Q ss_pred h
Q 029484 77 F 77 (192)
Q Consensus 77 ~ 77 (192)
+
T Consensus 342 ~ 342 (488)
T PRK00784 342 I 342 (488)
T ss_pred c
Confidence 7
|
|
| >KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.8e-06 Score=77.49 Aligned_cols=162 Identities=15% Similarity=0.154 Sum_probs=95.0
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc---hh----------HHHHHHhCC--CCCEEeeeH
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG---IS----------LQTVLELGP--TVPLFGVCM 68 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~---~~----------~~~~~~~~~--~~PilGIC~ 68 (192)
+-.+..+|++..=+...+.-.......+|.||+..||.+..+-.+ -| +..+.++.+ +.=-||||.
T Consensus 1076 a~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCN 1155 (1320)
T KOG1907|consen 1076 AAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICN 1155 (1320)
T ss_pred HHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhHHHHHHHHhcCCCceeeeccc
Confidence 345677888776665532222222223799999999987653221 12 333444433 333789999
Q ss_pred hHHHHHHH--hCCeee--------ecCCccccccceeeEEcccCCCccccCCC-Ccccccccccccc---cc----cCCC
Q 029484 69 GLQCIGEA--FGGKIV--------RSPLGVMHGKSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLVI---EK----ESFP 130 (192)
Q Consensus 69 G~Q~l~~~--~gg~v~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~v---~~----~~l~ 130 (192)
|+|+|++. .|-.+. .+..++....+..+.+. ...+-+++++. ..+-++..|+.+- .. +.|.
T Consensus 1156 GCQlms~Lg~i~p~~~~~p~~~l~~Nes~rfE~r~~~vkI~-~~~SIml~gM~gs~LgvwvAHGEGRa~f~~e~~~e~~~ 1234 (1320)
T KOG1907|consen 1156 GCQLMSRLGWIGPEVGKWPDVFLDHNESGRFECRFGMVKIE-SNVSIMLSGMAGSVLGVWVAHGEGRATFRSEQNLEHLK 1234 (1320)
T ss_pred HhHHHHHhcccCccccCCCceeeecccccceeeeEEEEEeC-CCchhhhccccCCceeeEEEecccceecCcHHHHHHHh
Confidence 99999995 222222 22333334445555554 23445666665 3566777786442 11 1233
Q ss_pred CCCeEEEEEcCC-------------C---ceEEEeeCCCCceEEEeccCCCCC
Q 029484 131 SDALEVTAWTED-------------G---LIMAARHKKYKHLQGVQFHPESII 167 (192)
Q Consensus 131 ~~~~~~~a~s~~-------------~---~i~ai~~~~~~~~~g~QfHPE~~~ 167 (192)
.+++..+...+| + -|++|+..++. +++++.||||..
T Consensus 1235 ~~gl~~iryvdd~g~~te~yPfNpNGS~~gIAgicSpdGR-hLAMMPHpER~~ 1286 (1320)
T KOG1907|consen 1235 KEGLVCIRYVDDYGNVTELYPFNPNGSPDGIAGICSPDGR-HLAMMPHPERVF 1286 (1320)
T ss_pred hcCeeEEEEecCCCCEeeecccCCCCCcccceeeeCCCCC-eeeccCCchhee
Confidence 455555544322 2 39999999987 999999999984
|
|
| >cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=98.36 E-value=1e-06 Score=59.35 Aligned_cols=72 Identities=28% Similarity=0.506 Sum_probs=52.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHH-HhccCCCeEEECCCCCCCCCc---chhHHHHHH-hCCCCCEEeeeHhHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEE-LKRKNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI 73 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~-~~~~~~dglii~GG~~~~~~~---~~~~~~~~~-~~~~~PilGIC~G~Q~l 73 (192)
++.+.++..++++.+++........ ....++|+++++||....... ....+.+++ .++++|++|+|.|+|++
T Consensus 16 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence 4677889999999999875332110 112389999999998776544 344455554 56789999999999999
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende |
| >PRK13896 cobyrinic acid a,c-diamide synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.2e-06 Score=69.63 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=46.9
Q ss_pred HHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc----chhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 5 KYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 5 ~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~----~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
+.|+++ ++++.+.. ...+++. ++|+|+|+||.....+. ....+.+++ .+++.||+|+|.|+|+|++.+
T Consensus 253 ~~L~~~-aelv~fSP--l~~~~lp--~~D~l~lpGG~~e~~~~~L~~n~~~~~i~~~~~~G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 253 ERLRER-ADVVTFSP--VAGDPLP--DCDGVYLPGGYPELHADALADSPALDELADRAADGLPVLGECGGLMALAESL 325 (433)
T ss_pred HHHHhc-CcEEEEcC--CCCCCCC--CCCEEEeCCCchhhHHHHHHhCCcHHHHHHHHHCCCcEEEEehHHHHhhccc
Confidence 567888 77777654 2223344 78999999997543321 011244444 578999999999999999976
|
|
| >COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.2e-06 Score=66.05 Aligned_cols=139 Identities=19% Similarity=0.158 Sum_probs=87.6
Q ss_pred HHHHhccCCCeEEECCCCCCCCC--cchhHHHHH---H-hC-CCCCEEeeeHhHHHHHHH-hCCeeeecCCcccccccee
Q 029484 24 VEELKRKNPRGVLISPGPGAPQD--SGISLQTVL---E-LG-PTVPLFGVCMGLQCIGEA-FGGKIVRSPLGVMHGKSSL 95 (192)
Q Consensus 24 ~~~~~~~~~dglii~GG~~~~~~--~~~~~~~~~---~-~~-~~~PilGIC~G~Q~l~~~-~gg~v~~~~~~~~~~~~~~ 95 (192)
.+++...+|||+||+|-|--..+ .-.+.+.+. + .. .---.|-||+|.|.--.+ +|-.=..++... .|....
T Consensus 92 feeVk~~~FDG~IiTGAPve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~Kl-~GVy~h 170 (307)
T COG1897 92 FEEVKDQKFDGLIITGAPVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPEKL-SGVYKH 170 (307)
T ss_pred HHHHhhcccCceEEeCCcccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccchhh-hceeec
Confidence 45566668999999998775433 223323332 2 12 334689999999987776 443333333222 333222
Q ss_pred eEEcccCCCccccCCCCcccccccccccccccCC-CCCCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCC
Q 029484 96 VYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI 166 (192)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~ 166 (192)
-.. ...+.|+.++.+.|.+..+..-.+..+.+ .-+.+++++.|+..-+.-+..++++ -+=+-.|||+.
T Consensus 171 ~~l--~p~~~l~rGfdd~f~~PhSR~t~~~~e~i~~~~~LeIL~es~e~G~~l~a~k~~r-~ifv~gH~EYD 239 (307)
T COG1897 171 DIL--SPHSLLTRGFDDSFLAPHSRYTDVPKEDILAVPDLEILAESKEAGVYLLASKDGR-NIFVTGHPEYD 239 (307)
T ss_pred ccc--CccchhhccCCccccCcccccccCCHHHHhhCCCceeeecccccceEEEecCCCC-eEEEeCCcchh
Confidence 212 12566888898888777665544543322 2256999999988888888888876 56677899996
|
|
| >PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea [] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.9e-06 Score=63.79 Aligned_cols=48 Identities=19% Similarity=0.285 Sum_probs=36.4
Q ss_pred CCCeEEECCCCCCCCCcc-----hhHHHHHH-hCCCCCEEeeeHhHHHHHHHhC
Q 029484 31 NPRGVLISPGPGAPQDSG-----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~-----~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~g 78 (192)
++|+|+|+||.-...+.. .+.+.|++ .+++.||+|||.|+|+|.+.+-
T Consensus 7 ~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 7 DADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 899999999855443321 23455554 6789999999999999999874
|
Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process |
| >cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.7e-06 Score=54.12 Aligned_cols=72 Identities=28% Similarity=0.513 Sum_probs=51.3
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHH-HHhccCCCeEEECCCCCCCCCc---chhHHHHHH-hCCCCCEEeeeHhHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI 73 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~-~~~~~~~dglii~GG~~~~~~~---~~~~~~~~~-~~~~~PilGIC~G~Q~l 73 (192)
++.+.++..++.+.++........ .....++|++|++||+...... ....+.+.+ ..++.|++|+|.|+|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred cHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 467788999999999987533221 1123389999999998877554 344455543 56789999999999874
|
Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin |
| >PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1e-05 Score=63.04 Aligned_cols=74 Identities=14% Similarity=0.167 Sum_probs=51.3
Q ss_pred HHHHHhCCCeEEEEeCCC--------------------------------CCHHHHhccCCCeEEECCCCCCCC---C--
Q 029484 4 LKYMGELGYHFEVYRNDE--------------------------------LTVEELKRKNPRGVLISPGPGAPQ---D-- 46 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~--------------------------------~~~~~~~~~~~dglii~GG~~~~~---~-- 46 (192)
...|+++|+++.++.... .+.+++...+||+|+|+||.+... +
T Consensus 26 ~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~dyDalviPGG~g~~~~l~d~~ 105 (217)
T PRK11780 26 LLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEADAEDFDALIVPGGFGAAKNLSNFA 105 (217)
T ss_pred HHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHCChhhCCEEEECCCCchhhhhhhhc
Confidence 467888999988875321 122333334899999999976431 1
Q ss_pred --------cchhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 47 --------SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 47 --------~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
.....+.+++ .++++||.+||.|-++|+.++
T Consensus 106 ~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 106 VKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred ccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 2234455554 578999999999999999876
|
|
| >cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1 | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.2e-05 Score=62.29 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=52.1
Q ss_pred HHHHHhCCCeEEEEeCCC--------------------------------CCHHHHhccCCCeEEECCCCCCC---CC--
Q 029484 4 LKYMGELGYHFEVYRNDE--------------------------------LTVEELKRKNPRGVLISPGPGAP---QD-- 46 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~--------------------------------~~~~~~~~~~~dglii~GG~~~~---~~-- 46 (192)
.+.|+++|+++.+..... .+.+++...+||+|+|+||.+.. .+
T Consensus 23 ~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D~~ 102 (213)
T cd03133 23 LLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSDFA 102 (213)
T ss_pred HHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhhhc
Confidence 567899999998876421 22334333479999999996532 11
Q ss_pred --------cchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhC
Q 029484 47 --------SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 47 --------~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~g 78 (192)
...+.+.+++ .++++||.+||.|-++|+.+.+
T Consensus 103 ~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 103 VKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred ccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 2234445554 5789999999999999999764
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis. |
| >cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.6e-05 Score=58.79 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=34.3
Q ss_pred CCCeEEECCCCCCCC--CcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~--~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+||+|+++||++... ......+.+++ +.+++||.|||.|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 689999999975321 12334445554 57899999999999999996
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein | Back alignment and domain information |
|---|
Probab=97.93 E-value=4e-05 Score=60.26 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=35.9
Q ss_pred cCCCeEEECCCCCCCCC---cchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 30 KNPRGVLISPGPGAPQD---SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 30 ~~~dglii~GG~~~~~~---~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.+||+|+|+||.+...+ ...+.+.+++ .++++||.+||.|-++|..+
T Consensus 93 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 93 DDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred hhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 37999999999764332 2334455555 57899999999999999987
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer. |
| >COG3442 Predicted glutamine amidotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00014 Score=55.92 Aligned_cols=72 Identities=13% Similarity=0.173 Sum_probs=45.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCC----Cc-chhHHHH-HHhCCCCCEEeeeHhHHHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DS-GISLQTV-LELGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~----~~-~~~~~~~-~~~~~~~PilGIC~G~Q~l~~~ 76 (192)
|.+..+.+|+.+++++....+ ......+|.+++.||..... +. ..--..+ ..++.++|+|.||.|+|+|-..
T Consensus 26 Lr~ra~~rgi~v~i~~vsl~d--~~~~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y 103 (250)
T COG3442 26 LRQRAEKRGIKVEIVEVSLTD--TFPDDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY 103 (250)
T ss_pred ehHHHHhcCCceEEEEeecCC--CCCcccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence 456778899999998874322 22223678777777633211 11 1111122 2468999999999999999885
|
|
| >TIGR00313 cobQ cobyric acid synthase CobQ | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.1e-05 Score=69.85 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=34.5
Q ss_pred CCCeEEECCCCCCCCCcc-----hhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 31 NPRGVLISPGPGAPQDSG-----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~-----~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
++|+|+|+||.....+.. .+.+.+++ .+++.||+|||.|||+|.+.+
T Consensus 284 ~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 284 GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKEL 336 (475)
T ss_pred cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhhh
Confidence 789999999964333211 13344554 568999999999999999975
|
|
| >TIGR01382 PfpI intracellular protease, PfpI family | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.6e-05 Score=56.49 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=48.6
Q ss_pred HHHHHHhCCCeEEEEeCCC--------------CCHHHHhccCCCeEEECCCCCCCC--CcchhHHHHHH-hCCCCCEEe
Q 029484 3 FLKYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPLFG 65 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~--------------~~~~~~~~~~~dglii~GG~~~~~--~~~~~~~~~~~-~~~~~PilG 65 (192)
..+.|+.+|+++.++.... .+.+++...++|+|+++||++... ......+.+++ ..+++|+.|
T Consensus 18 ~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ 97 (166)
T TIGR01382 18 PLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAA 97 (166)
T ss_pred HHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEE
Confidence 3566777888887775321 122222222699999999976321 22334455554 468899999
Q ss_pred eeHhHHHHHHH
Q 029484 66 VCMGLQCIGEA 76 (192)
Q Consensus 66 IC~G~Q~l~~~ 76 (192)
||.|.++|+.+
T Consensus 98 ic~G~~~La~a 108 (166)
T TIGR01382 98 ICHGPQLLISA 108 (166)
T ss_pred EChHHHHHHhc
Confidence 99999999985
|
The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs. |
| >cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.8e-05 Score=60.33 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=48.7
Q ss_pred cHHHHHHhC-CCeEEEEeCCCC-C-HHHHhccCCCeEEECCCCCCCCCcch------hHHHHHH-hCCCCCEEeeeHhHH
Q 029484 2 TFLKYMGEL-GYHFEVYRNDEL-T-VEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGLQ 71 (192)
Q Consensus 2 ~l~~~l~~~-g~~~~v~~~~~~-~-~~~~~~~~~dglii~GG~~~~~~~~~------~~~~~~~-~~~~~PilGIC~G~Q 71 (192)
++.++++.+ |++++.+...+. . .+.+. +.|+|+++|| +...... +.+.+++ .++++|++|||.|+|
T Consensus 50 ~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~--~ad~I~l~GG--~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~ 125 (212)
T cd03146 50 RFYAAFESLRGVEVSHLHLFDTEDPLDALL--EADVIYVGGG--NTFNLLAQWREHGLDAILKAALERGVVYIGWSAGSN 125 (212)
T ss_pred HHHHHHhhccCcEEEEEeccCcccHHHHHh--cCCEEEECCc--hHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHH
Confidence 456788999 999988864221 1 23344 8999999996 4322211 2233443 568999999999999
Q ss_pred HHHHH
Q 029484 72 CIGEA 76 (192)
Q Consensus 72 ~l~~~ 76 (192)
++...
T Consensus 126 i~~~~ 130 (212)
T cd03146 126 CWFPS 130 (212)
T ss_pred hhCCC
Confidence 99985
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption. |
| >cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=97.80 E-value=9e-05 Score=54.87 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=49.4
Q ss_pred HHHHHHhCCCeEEEEeCC-CC---------------CHHHHhccCCCeEEECCCCCCCC--CcchhHHHHHH-hCCCCCE
Q 029484 3 FLKYMGELGYHFEVYRND-EL---------------TVEELKRKNPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPL 63 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~-~~---------------~~~~~~~~~~dglii~GG~~~~~--~~~~~~~~~~~-~~~~~Pi 63 (192)
+.+.|+.+|+++.++..+ .. +.++....++|+|+++||+.... ....+++.+++ ..+++||
T Consensus 18 ~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i 97 (165)
T cd03134 18 PLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPV 97 (165)
T ss_pred HHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeE
Confidence 355678888888887543 11 12222222689999999974321 22344555554 5789999
Q ss_pred EeeeHhHHHHHHH
Q 029484 64 FGVCMGLQCIGEA 76 (192)
Q Consensus 64 lGIC~G~Q~l~~~ 76 (192)
.|||.|.++|+++
T Consensus 98 ~~ic~G~~~La~a 110 (165)
T cd03134 98 AAICHGPWVLISA 110 (165)
T ss_pred EEEchHHHHHHhc
Confidence 9999999999985
|
A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. |
| >COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.8e-05 Score=65.69 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=39.8
Q ss_pred CCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch-----hHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 11 GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-----SLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 11 g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~-----~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
++++.+++. ..++. ++|.+||+|......|... +.+.+.+ ...+.||+|||.|||||...+
T Consensus 276 ~v~v~~v~~----~~~l~--~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~i 342 (486)
T COG1492 276 DVRVRFVKP----GSDLR--DADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRRL 342 (486)
T ss_pred CeEEEEecc----CCCCC--CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhhhh
Confidence 677777764 23344 5788888876444433221 2334444 456999999999999998853
|
|
| >cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP) | Back alignment and domain information |
|---|
Probab=97.64 E-value=2.7e-05 Score=54.38 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=28.2
Q ss_pred CCCeEEECCCCCCCCCcc---hhHHHHHH-hCCCCCEEeeeHhHHHH
Q 029484 31 NPRGVLISPGPGAPQDSG---ISLQTVLE-LGPTVPLFGVCMGLQCI 73 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~---~~~~~~~~-~~~~~PilGIC~G~Q~l 73 (192)
++|.||+|||........ .-.+.+++ +++++|+||||+|.-+.
T Consensus 44 ~ad~lVlPGGa~~~~~~~L~~~g~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 44 KTALLVVPGGADLPYCRALNGKGNRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred CCCEEEECCCChHHHHHHHHhhCcHHHHHHHHCCCcEEEEecCccce
Confidence 689999999543321110 00333444 56889999999998776
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved. |
| >PRK04155 chaperone protein HchA; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00033 Score=56.79 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=35.3
Q ss_pred ccCCCeEEECCCCCCCCC---cchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 29 RKNPRGVLISPGPGAPQD---SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 29 ~~~~dglii~GG~~~~~~---~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
..+||+|+|+||.+...+ ...+.+.++. .++++||.+||.|-++|..+
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 348999999999775432 2234444544 57899999999999887764
|
|
| >cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0002 Score=51.72 Aligned_cols=74 Identities=19% Similarity=0.111 Sum_probs=50.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCC--------------HHHHhccCCCeEEECCCCCCCC---CcchhHHHHHH-hCCCCCEE
Q 029484 3 FLKYMGELGYHFEVYRNDELT--------------VEELKRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLF 64 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~--------------~~~~~~~~~dglii~GG~~~~~---~~~~~~~~~~~-~~~~~Pil 64 (192)
+.+.|+.+|+++.++..+..+ .++....+||.|+|+||.+... ....+.+.+++ ..+++||.
T Consensus 20 ~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~ 99 (142)
T cd03132 20 LKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIG 99 (142)
T ss_pred HHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccChHHHHHHHHHHhcCCeEE
Confidence 467788889998888643211 1122222589999999876532 33445555655 56889999
Q ss_pred eeeHhHHHHHHH
Q 029484 65 GVCMGLQCIGEA 76 (192)
Q Consensus 65 GIC~G~Q~l~~~ 76 (192)
+||-|-.+|+.+
T Consensus 100 aic~G~~~La~a 111 (142)
T cd03132 100 AVGEGSDLLEAA 111 (142)
T ss_pred EcCchHHHHHHc
Confidence 999999999985
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C |
| >cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00044 Score=53.99 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=35.2
Q ss_pred CCCeEEECCCCCCCC---CcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~---~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+||+|+|+||.+... +.....+.+++ .+++++|.+||.|-.+|+.+
T Consensus 90 ~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 90 DYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred HceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 699999999976432 23345555554 56889999999999999986
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different |
| >cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31) | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00071 Score=53.28 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=34.8
Q ss_pred cCCCeEEECCCCCCCCC---cchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 30 KNPRGVLISPGPGAPQD---SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 30 ~~~dglii~GG~~~~~~---~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.+||+|+++||.+...+ ...+.+.+++ .++++||-.||.|-++|..+
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 37999999999665433 2234455554 57899999999999987765
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer. |
| >cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00049 Score=51.37 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=34.7
Q ss_pred CCCeEEECCCCCCC-CCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAP-QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~-~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|.++|+||.... .....+.+.+++ ..++++|.+||-|.++|+.+
T Consensus 60 ~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 60 DYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred HccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 79999999996532 222334555554 46789999999999999996
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00084 Score=49.36 Aligned_cols=74 Identities=11% Similarity=0.173 Sum_probs=48.4
Q ss_pred HHHHHHhCCCeEEEEeCCC---------------CCHHHHhccCCCeEEECCCCCCC---CCcchhHHHHHH-hCCCCCE
Q 029484 3 FLKYMGELGYHFEVYRNDE---------------LTVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPL 63 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~---------------~~~~~~~~~~~dglii~GG~~~~---~~~~~~~~~~~~-~~~~~Pi 63 (192)
..+.|+.+|+++.++..+. .+.++....+||.|+|+||++.. .+...+.+.+++ ..++++|
T Consensus 17 ~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i 96 (163)
T cd03135 17 PVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLI 96 (163)
T ss_pred HHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEE
Confidence 3556677777777664321 11222222379999999997322 223345555554 4688999
Q ss_pred EeeeHhHHHHHHH
Q 029484 64 FGVCMGLQCIGEA 76 (192)
Q Consensus 64 lGIC~G~Q~l~~~ 76 (192)
.+||-|..+|+.+
T Consensus 97 ~~ic~g~~~La~a 109 (163)
T cd03135 97 AAICAAPAVLAKA 109 (163)
T ss_pred EEEchhHHHHHHc
Confidence 9999999999997
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly |
| >COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00048 Score=52.18 Aligned_cols=74 Identities=15% Similarity=0.234 Sum_probs=49.1
Q ss_pred HHHHHhCCCeEEEEeCCCC-----------------CHHHHhccCCCeEEECCC-CCCCCCc--chhHHHHHH-hCCCCC
Q 029484 4 LKYMGELGYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPG-PGAPQDS--GISLQTVLE-LGPTVP 62 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~-----------------~~~~~~~~~~dglii~GG-~~~~~~~--~~~~~~~~~-~~~~~P 62 (192)
.+.|+.+|..+.++..... ..+++...+||+|+++|| .+..... ..+++.+++ .+.++|
T Consensus 22 ~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~ 101 (188)
T COG0693 22 YDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKP 101 (188)
T ss_pred HHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCE
Confidence 4567777777666644211 111112237999999999 5554333 345566665 568999
Q ss_pred EEeeeHhHHHHHHHh
Q 029484 63 LFGVCMGLQCIGEAF 77 (192)
Q Consensus 63 ilGIC~G~Q~l~~~~ 77 (192)
|.+||.|-++|+.+-
T Consensus 102 vaaIC~g~~~L~~ag 116 (188)
T COG0693 102 VAAICHGPAVLAAAG 116 (188)
T ss_pred EEEEChhHHHHhccc
Confidence 999999999999873
|
|
| >cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00071 Score=51.08 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=35.7
Q ss_pred CCCeEEECCCCCCC--CCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~--~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|.|+++||.+.. .+...+.+.+++ ..++++|.+||.|-++|+++
T Consensus 64 ~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 64 AADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred CCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 79999999996654 233445566665 46789999999999999996
|
A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >PRK05282 (alpha)-aspartyl dipeptidase; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00062 Score=53.56 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=49.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC----cchhHHHHH-HhCCCCCEEeeeHhHHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVL-ELGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~----~~~~~~~~~-~~~~~~PilGIC~G~Q~l~~~~ 77 (192)
..+.++..|+++..++..+...+.+. +.|+|+++||.....- ...+.+.++ .+++++|++|+|.|.-+++...
T Consensus 53 ~~~af~~lG~~v~~l~~~~d~~~~l~--~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 53 VAEALAPLGIEVTGIHRVADPVAAIE--NAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTI 130 (233)
T ss_pred HHHHHHHCCCEEEEeccchhhHHHHh--cCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccc
Confidence 45678889999888875432233344 8899999998543211 111233343 3678999999999998888865
Q ss_pred C
Q 029484 78 G 78 (192)
Q Consensus 78 g 78 (192)
.
T Consensus 131 ~ 131 (233)
T PRK05282 131 R 131 (233)
T ss_pred e
Confidence 4
|
|
| >PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.014 Score=48.93 Aligned_cols=45 Identities=13% Similarity=0.229 Sum_probs=34.7
Q ss_pred CCCeEEECCCCCCCCCc---chhHHHHHH-hCCCCCEEeeeHhHHHHHH
Q 029484 31 NPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~---~~~~~~~~~-~~~~~PilGIC~G~Q~l~~ 75 (192)
+++.+|++||...++.. +.-.+.|++ +.+|--.||||.|.-.-+.
T Consensus 49 ~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 49 KCALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYASS 97 (367)
T ss_pred CCcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence 78999999998776543 223556666 5779999999999988776
|
It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase. |
| >PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0001 Score=53.74 Aligned_cols=55 Identities=22% Similarity=0.407 Sum_probs=39.5
Q ss_pred CCHHHHhccCCCeEEECCCCCCC---C-CcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 22 LTVEELKRKNPRGVLISPGPGAP---Q-DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 22 ~~~~~~~~~~~dglii~GG~~~~---~-~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.+.+++...+||+|||+||.+.. . +...+.+.+++ .+.++||.+||.|-.+|+.+
T Consensus 28 ~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 28 KTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp EEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred CcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 44667766689999999998843 2 22445566665 46799999999999999886
|
Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C .... |
| >PRK11574 oxidative-stress-resistance chaperone; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.003 Score=48.14 Aligned_cols=73 Identities=11% Similarity=0.127 Sum_probs=45.9
Q ss_pred HHHHHhCCCeEEEEeCC-----------------CCCHHHHhccCCCeEEECCCCCCCC---CcchhHHHHHH-hCCCCC
Q 029484 4 LKYMGELGYHFEVYRND-----------------ELTVEELKRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVP 62 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~-----------------~~~~~~~~~~~~dglii~GG~~~~~---~~~~~~~~~~~-~~~~~P 62 (192)
.+.|+.+|+++.+.... +.+.+++...++|.|+|+||.+... +...+.+.+++ .+++++
T Consensus 22 ~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~ 101 (196)
T PRK11574 22 IDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRI 101 (196)
T ss_pred HHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCE
Confidence 45677777776665431 1122333223699999999865432 22335555554 468999
Q ss_pred EEeeeHhHHHHHHH
Q 029484 63 LFGVCMGLQCIGEA 76 (192)
Q Consensus 63 ilGIC~G~Q~l~~~ 76 (192)
|.+||.|..+|...
T Consensus 102 v~aic~G~~~ll~~ 115 (196)
T PRK11574 102 VAAICAAPATVLVP 115 (196)
T ss_pred EEEECHhHHHHHHh
Confidence 99999999976543
|
|
| >cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0056 Score=45.88 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=34.8
Q ss_pred CCCeEEECCCCCCC--CCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~--~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|.|||+||.+.. .....+.+.+++ ..++++|.+||.|..+|+++
T Consensus 62 ~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 62 DLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 79999999996543 223345555554 57899999999999999885
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0064 Score=47.24 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=47.6
Q ss_pred HHHHHhCCCeEEEEeCC---------------CCCHHHHhccCCCeEEECCC-CCCCCC--cchhHHHHHH-hCCCCCEE
Q 029484 4 LKYMGELGYHFEVYRND---------------ELTVEELKRKNPRGVLISPG-PGAPQD--SGISLQTVLE-LGPTVPLF 64 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~---------------~~~~~~~~~~~~dglii~GG-~~~~~~--~~~~~~~~~~-~~~~~Pil 64 (192)
...|++.|++|.+.... +....+....+||.+||+|| +|.-.- .....+.+++ .+.+++|.
T Consensus 25 ~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIa 104 (247)
T KOG2764|consen 25 IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIA 104 (247)
T ss_pred HHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEE
Confidence 35688889999888642 12223333358999999999 776432 2333344443 46799999
Q ss_pred eeeHhHHHHHHH
Q 029484 65 GVCMGLQCIGEA 76 (192)
Q Consensus 65 GIC~G~Q~l~~~ 76 (192)
.||.|=-++..+
T Consensus 105 aICaap~~al~a 116 (247)
T KOG2764|consen 105 AICAAPLTALAA 116 (247)
T ss_pred EeecchHHHHhh
Confidence 999986555444
|
|
| >TIGR01383 not_thiJ DJ-1 family protein | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0033 Score=47.03 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=34.9
Q ss_pred cCCCeEEECCCCCCC---CCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 30 KNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 30 ~~~dglii~GG~~~~---~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.++|.|+|+||.... .+...+.+.+++ ..++++|.+||-|-.+|+.+
T Consensus 62 ~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 62 EEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred ccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 379999999986322 223345555554 46889999999999999996
|
This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus. |
| >COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.019 Score=48.83 Aligned_cols=162 Identities=18% Similarity=0.231 Sum_probs=90.2
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCC-----CcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~-----~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
.+.|+++|++++.+.. ...+++.. ++|+|+|.||.--.+ +.....+.|++ .+.++||+|=|.|+-.|++.+
T Consensus 264 l~~Lr~~GAelv~FSP--L~D~~lP~-~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~l 340 (451)
T COG1797 264 LELLREAGAELVFFSP--LADEELPP-DVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGESL 340 (451)
T ss_pred HHHHHHCCCEEEEeCC--cCCCCCCC-CCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhhe
Confidence 5679999999999965 22233332 599999999844322 11234555655 578999999999999999975
Q ss_pred ---CCeeeecCCcccc-----------ccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEE--EcC
Q 029484 78 ---GGKIVRSPLGVMH-----------GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTA--WTE 141 (192)
Q Consensus 78 ---gg~v~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a--~s~ 141 (192)
.|...++- +... -+...+. ..++.++...++.+.-..+|.-.+.. .++ .+... ..-
T Consensus 341 e~~~G~~~~M~-Gvlp~~~~m~~Rl~~lGY~~~~---~~~d~~~~~~G~~irGHEFHyS~~~~---~~~-~~~a~~~~~g 412 (451)
T COG1797 341 EDADGDTYEMV-GVLPGSTRMTKRLQALGYREAE---AVDDTLLLRAGEKIRGHEFHYSRLIT---EED-AEPAFRVRRG 412 (451)
T ss_pred eccCCceeeee-eeeccchhhhhhhhccceeEEE---ecCCcccccCCceeeeeeeeeeeccc---CCc-Cceeeeeecc
Confidence 33444432 1100 0011111 12344555445667777777655432 111 22222 111
Q ss_pred CCc---eEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHH
Q 029484 142 DGL---IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182 (192)
Q Consensus 142 ~~~---i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~ 182 (192)
++. -.++... +++|.=.|-=.. ....+..+|+..+
T Consensus 413 ~g~~~~~~G~~~g---nv~asY~H~H~~---s~~~~~~~~v~~~ 450 (451)
T COG1797 413 DGIDNGRDGYRSG---NVLASYLHLHFA---SNPAFAARFVAAA 450 (451)
T ss_pred cCccccccceeeC---CeEEEEEeeecc---cCHHHHHHHHHhh
Confidence 222 2344433 477777665543 3356777777654
|
|
| >cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0063 Score=46.20 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=34.8
Q ss_pred CCCeEEECCCCCCCC-----CcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~-----~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|.|+|+||.+... ....+++.+++ ..++++|.+||.|..+|+.+
T Consensus 69 ~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 69 APDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred CCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 799999999865432 23344555554 56889999999999999985
|
A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. |
| >PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.077 Score=41.08 Aligned_cols=153 Identities=18% Similarity=0.151 Sum_probs=75.9
Q ss_pred HHHHHH-hCCCeEEEEeC-CCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhH-------HH
Q 029484 3 FLKYMG-ELGYHFEVYRN-DELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL-------QC 72 (192)
Q Consensus 3 l~~~l~-~~g~~~~v~~~-~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~-------Q~ 72 (192)
+.+.++ +.|+++++... +....+.|. ++|.||+....+.. ......+.+++ +++|.+++||..+. .-
T Consensus 24 l~~ll~~~~~~~v~~~~~~~~~~~~~L~--~~Dvvv~~~~~~~~-l~~~~~~al~~~v~~Ggglv~lH~~~~~~~~~~~~ 100 (217)
T PF06283_consen 24 LAQLLEESEGFEVTVTEDPDDLTPENLK--GYDVVVFYNTGGDE-LTDEQRAALRDYVENGGGLVGLHGAATDSFPDWPE 100 (217)
T ss_dssp HHHHHHHTTCEEEEECCSGGCTSHHCHC--T-SEEEEE-SSCCG-S-HHHHHHHHHHHHTT-EEEEEGGGGGCCHTT-HH
T ss_pred HHHHhccCCCEEEEEEeCcccCChhHhc--CCCEEEEECCCCCc-CCHHHHHHHHHHHHcCCCEEEEcccccccchhHHH
Confidence 456666 67888888753 223333444 89999998876422 12233444544 67999999999443 22
Q ss_pred HHHHhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCC----------
Q 029484 73 IGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED---------- 142 (192)
Q Consensus 73 l~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~---------- 142 (192)
....+||.....+. .. ...+. ....++++.++++..+....-...... .+.++..+|++...
T Consensus 101 ~~~l~Gg~f~~h~~---~~-~~~v~-~~~~~HPi~~gl~~~f~~~DE~Y~~~~---~~~~~~~vL~~~~~~~~~~~~~~~ 172 (217)
T PF06283_consen 101 YNELLGGYFKGHPP---PQ-PFTVR-VEDPDHPITRGLPESFTIYDEWYYFLR---DPRPNVTVLLTADESSYDPEGGEG 172 (217)
T ss_dssp HHHHHS--SEEEEC---EE-EEEEE-ESSTTSCCCTTS-SEEEEEEEEEES-B---S---CEEEEEEEE--GGG--TTTS
T ss_pred HHHeeCccccCCCC---Cc-eEEEE-EcCCCChhhcCCCCCceEccccccccc---CCCCCEEEEEEEEeccccccccCC
Confidence 34467765543321 11 11222 224578999999877765332222221 13345777776541
Q ss_pred --CceEEEeeCC-CCceEEEeccCCCC
Q 029484 143 --GLIMAARHKK-YKHLQGVQFHPESI 166 (192)
Q Consensus 143 --~~i~ai~~~~-~~~~~g~QfHPE~~ 166 (192)
.++.-....+ .+-++-...|.+.+
T Consensus 173 ~~~Pv~W~~~~GkGRvf~~~lGH~~~~ 199 (217)
T PF06283_consen 173 GDHPVAWTREYGKGRVFYTTLGHDEET 199 (217)
T ss_dssp SEEEEEEEEECTTEEEEEE----TTSH
T ss_pred CeEEEEEEEEeCCeeEEEECCCCChhh
Confidence 1344444333 34466677798764
|
|
| >PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0056 Score=45.28 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=34.6
Q ss_pred CCCeEEECCCCC--CCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPG--APQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~--~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|.|||+||+. .......+++.+++ ..++.+|.+||.|..+|+++
T Consensus 61 ~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 61 DFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp CCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred cCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 799999999988 12233445566654 56889999999999999997
|
... |
| >PRK11249 katE hydroperoxidase II; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.015 Score=52.96 Aligned_cols=74 Identities=16% Similarity=0.077 Sum_probs=50.2
Q ss_pred HHHHHHhCCCeEEEEeCCCC--------------CHHHHhccCCCeEEECCCCCCCC---CcchhHHHHHH-hCCCCCEE
Q 029484 3 FLKYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLF 64 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dglii~GG~~~~~---~~~~~~~~~~~-~~~~~Pil 64 (192)
+.++|+.+|+.+.++..... +.++.....||+|+|+||..... .....+..+++ +..+++|.
T Consensus 616 ~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IA 695 (752)
T PRK11249 616 ILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIA 695 (752)
T ss_pred HHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEE
Confidence 56788899999888854211 11112122599999999865432 23334455554 67889999
Q ss_pred eeeHhHHHHHHH
Q 029484 65 GVCMGLQCIGEA 76 (192)
Q Consensus 65 GIC~G~Q~l~~~ 76 (192)
+||-|.++|+.+
T Consensus 696 AiCaG~~LLaaA 707 (752)
T PRK11249 696 LAGDARKLKAAL 707 (752)
T ss_pred EeCccHHHHHhc
Confidence 999999999974
|
|
| >cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.016 Score=44.67 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=47.6
Q ss_pred HHHHHHhCCCeEEEEeCCCC-CHHH-Hhc-cCCCeEEECCCCCCCCC----cchhHHHHH-HhCCCCCEEeeeHhHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDEL-TVEE-LKR-KNPRGVLISPGPGAPQD----SGISLQTVL-ELGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~-~~~~-~~~-~~~dglii~GG~~~~~~----~~~~~~~~~-~~~~~~PilGIC~G~Q~l~ 74 (192)
+.+++++.|++++.+...+. +.++ +.. .+.|+|+++||...... .....+.+. .+.++.|+.|+|.|..++.
T Consensus 49 ~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~ 128 (210)
T cd03129 49 YRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMG 128 (210)
T ss_pred HHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhh
Confidence 46788899999887765211 1122 111 28999999997443211 111233333 3458999999999999999
Q ss_pred HH
Q 029484 75 EA 76 (192)
Q Consensus 75 ~~ 76 (192)
..
T Consensus 129 ~~ 130 (210)
T cd03129 129 ET 130 (210)
T ss_pred hc
Confidence 86
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from |
| >PLN02929 NADH kinase | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.028 Score=45.84 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=41.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 69 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G 69 (192)
+.++|++.|+++..+.-.+. .+.+ .++|.+|..||.| .+++..+.+..++|||||-.|
T Consensus 39 ~~~~L~~~gi~~~~v~r~~~-~~~~--~~~Dlvi~lGGDG------T~L~aa~~~~~~iPvlGIN~G 96 (301)
T PLN02929 39 CKDILQQKSVDWECVLRNEL-SQPI--RDVDLVVAVGGDG------TLLQASHFLDDSIPVLGVNSD 96 (301)
T ss_pred HHHHHHHcCCEEEEeecccc-cccc--CCCCEEEEECCcH------HHHHHHHHcCCCCcEEEEECC
Confidence 57789999999977643222 1112 2789999999965 455555556678999999998
|
|
| >cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.024 Score=42.67 Aligned_cols=46 Identities=20% Similarity=0.123 Sum_probs=34.5
Q ss_pred CCCeEEECCCCCCCC-CcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQ-DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~-~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|.|||+||.+... .....++.+++ ..+++.|.+||-|..+|+++
T Consensus 64 ~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 64 PLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred CCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 789999999865432 22334555554 46889999999999999985
|
A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee |
| >PRK09393 ftrA transcriptional activator FtrA; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.034 Score=45.68 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=34.0
Q ss_pred CCCeEEECCCCCCCCC-cchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQD-SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~~-~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|.|||+||.+.... ...+.+.+++ ..++++|.|||-|..+|+.+
T Consensus 75 ~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 75 RADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred CCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 7899999998653222 2334555554 45789999999999999986
|
|
| >PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.19 Score=41.20 Aligned_cols=61 Identities=23% Similarity=0.354 Sum_probs=41.1
Q ss_pred HHHHHHhCCCeEEEEeCCCC------------------CH-HHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDEL------------------TV-EELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVP 62 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~------------------~~-~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~P 62 (192)
+.+||++.|+++.+...... +. .++ ..++|.+|..||.| .+++..+. ...++|
T Consensus 26 l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~lGGDG------T~L~aar~~~~~~~P 98 (306)
T PRK03372 26 VAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDA-ADGCELVLVLGGDG------TILRAAELARAADVP 98 (306)
T ss_pred HHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhc-ccCCCEEEEEcCCH------HHHHHHHHhccCCCc
Confidence 67789999999888653110 00 111 12589999999965 45566554 356899
Q ss_pred EEeeeHhH
Q 029484 63 LFGVCMGL 70 (192)
Q Consensus 63 ilGIC~G~ 70 (192)
||||-.|.
T Consensus 99 ilGIN~G~ 106 (306)
T PRK03372 99 VLGVNLGH 106 (306)
T ss_pred EEEEecCC
Confidence 99999884
|
|
| >PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.27 Score=40.13 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=41.5
Q ss_pred HHHHHHhCCCeEEEEeCCCC---------------CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEee
Q 029484 3 FLKYMGELGYHFEVYRNDEL---------------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~---------------~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGI 66 (192)
+.+||++.|+++.+...... +..++. .++|.+|..||.| .+++..+.+ ..++|||||
T Consensus 26 l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~lGGDG------T~L~aa~~~~~~~~PilGI 98 (296)
T PRK04539 26 LITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELG-QYCDLVAVLGGDG------TFLSVAREIAPRAVPIIGI 98 (296)
T ss_pred HHHHHHHCCCEEEEecccccccchhccccccccccchhhcC-cCCCEEEEECCcH------HHHHHHHHhcccCCCEEEE
Confidence 67889999999987642100 011221 2589999999965 455665554 468999999
Q ss_pred eHhH
Q 029484 67 CMGL 70 (192)
Q Consensus 67 C~G~ 70 (192)
-.|.
T Consensus 99 N~G~ 102 (296)
T PRK04539 99 NQGH 102 (296)
T ss_pred ecCC
Confidence 9986
|
|
| >PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.26 Score=40.23 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=41.1
Q ss_pred HHHHHHhCCCeEEEEeCCCC----------CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDEL----------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~----------~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~G~ 70 (192)
+.+||++.|+++.+...... +..++. .++|.+|+.||.| .+++..+.+ ..++|||||-.|.
T Consensus 26 i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~lGGDG------T~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 26 LYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIG-QQADLAIVVGGDG------NMLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred HHHHHHHCCCEEEEecchhhhcCcccccccchhhcC-CCCCEEEEECCcH------HHHHHHHHhcCCCCeEEEEECCC
Confidence 67789999999887542100 111221 2589999999965 455655554 3479999999998
|
|
| >PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.24 Score=40.36 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=41.3
Q ss_pred HHHHHHhCCCeEEEEeCCCC----------------CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEe
Q 029484 3 FLKYMGELGYHFEVYRNDEL----------------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG 65 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~----------------~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilG 65 (192)
+.+||++.|+++.+...... +..++. ..+|.+|+.||.| .+++..+.+ ..++||||
T Consensus 21 i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~lGGDG------T~L~aa~~~~~~~~PilG 93 (292)
T PRK01911 21 LFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELD-GSADMVISIGGDG------TFLRTATYVGNSNIPILG 93 (292)
T ss_pred HHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcc-cCCCEEEEECCcH------HHHHHHHHhcCCCCCEEE
Confidence 67789999999988642100 112222 1589999999965 455665554 46899999
Q ss_pred eeHhH
Q 029484 66 VCMGL 70 (192)
Q Consensus 66 IC~G~ 70 (192)
|-.|.
T Consensus 94 IN~G~ 98 (292)
T PRK01911 94 INTGR 98 (292)
T ss_pred EecCC
Confidence 99985
|
|
| >PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.23 Score=40.16 Aligned_cols=62 Identities=19% Similarity=0.326 Sum_probs=41.6
Q ss_pred HHHHHHhCCCeEEEEeCCC-----C---CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDE-----L---TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~-----~---~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 70 (192)
+.+||++.|.++.+..... . ...++...++|.+|+.||.| .+++.++....++||+||-.|.
T Consensus 21 I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG------TlL~a~~~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 21 VYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDG------TILRIEHKTKKDIPILGINMGT 90 (277)
T ss_pred HHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcH------HHHHHHHhcCCCCeEEEEeCCC
Confidence 6788999999998864210 0 00122222689999999966 3445555445689999999986
|
|
| >PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.32 Score=39.23 Aligned_cols=60 Identities=23% Similarity=0.409 Sum_probs=41.3
Q ss_pred HHHHHHhCCCeEEEEeCCC----------CCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeHh
Q 029484 3 FLKYMGELGYHFEVYRNDE----------LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 69 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~----------~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~G 69 (192)
+.+||++.|+++.+..... .+.+++. .++|.+|..||.| .+++..+.+ ..++|||||-.|
T Consensus 5 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~iGGDG------T~L~aa~~~~~~~~PilgIn~G 75 (272)
T PRK02231 5 LFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIG-QRAQLAIVIGGDG------NMLGRARVLAKYDIPLIGINRG 75 (272)
T ss_pred HHHHHHHCCCEEEEecchhhhcCccccccCChHHhC-cCCCEEEEECCcH------HHHHHHHHhccCCCcEEEEeCC
Confidence 6789999999998865210 0112222 2589999999965 455665554 468999999987
|
|
| >PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.46 Score=38.74 Aligned_cols=62 Identities=23% Similarity=0.342 Sum_probs=41.9
Q ss_pred cHHHHHHhCCCeEEEEeCCC----------CCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeHhH
Q 029484 2 TFLKYMGELGYHFEVYRNDE----------LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 70 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~----------~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~G~ 70 (192)
.+.+++++.|+++.+..... .+.+++. ..+|.+|..||.| .+++.++.+ ..++|+|||-.|.
T Consensus 25 ~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~~GGDG------t~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 25 SLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIG-ARADLAVVLGGDG------TMLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred HHHHHHHHCCCEEEEecchhhhcCcccccccChhHhc-cCCCEEEEECCcH------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 36788999999977754210 1112222 2589999999965 455666654 4689999999986
|
|
| >PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.39 Score=39.04 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=41.6
Q ss_pred HHHHHHhCCCeEEEEeCCC-------CCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDE-------LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~-------~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~G~ 70 (192)
+.+||++.|+++.+..... .+..++. .++|.+|..||.| .+++..+.+ ..++|||||-.|.
T Consensus 30 i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGGDG------T~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 30 LQKILSIYKVEILLEKESAEILDLPGYGLDELF-KISDFLISLGGDG------TLISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred HHHHHHHCCCEEEEecchhhhhcccccchhhcc-cCCCEEEEECCCH------HHHHHHHHhcCCCCcEEEEeCCC
Confidence 6778999999988864210 0112222 2689999999965 455666554 4689999999986
|
|
| >PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.45 Score=39.04 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=40.9
Q ss_pred HHHHHHhCCCeEEEEeCCC-------------------CCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDE-------------------LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 62 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~-------------------~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~P 62 (192)
+.+||++.|+++.+..... .+..++. .++|.+|+.||.| .+++..+.+ ..++|
T Consensus 22 l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGGDG------TlL~aar~~~~~~iP 94 (305)
T PRK02649 22 LQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFD-SSMKFAIVLGGDG------TVLSAARQLAPCGIP 94 (305)
T ss_pred HHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcc-cCcCEEEEEeCcH------HHHHHHHHhcCCCCc
Confidence 6778999999987754210 0111221 2589999999965 456666653 46899
Q ss_pred EEeeeHhH
Q 029484 63 LFGVCMGL 70 (192)
Q Consensus 63 ilGIC~G~ 70 (192)
||||-.|.
T Consensus 95 ilGIN~G~ 102 (305)
T PRK02649 95 LLTINTGH 102 (305)
T ss_pred EEEEeCCC
Confidence 99999873
|
|
| >PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.13 Score=37.65 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=43.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhcc--CCCeEEECCCCCCCCC----cchhHHHHHH-hCCCCCEEeeeHhHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRK--NPRGVLISPGPGAPQD----SGISLQTVLE-LGPTVPLFGVCMGLQCI 73 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglii~GG~~~~~~----~~~~~~~~~~-~~~~~PilGIC~G~Q~l 73 (192)
..++++++|+++..++....+.++.... +.|+|+++||.-.... ...+.+.+++ +.++.++.|+=.|.-++
T Consensus 5 ~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~i~ 82 (154)
T PF03575_consen 5 FRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGAMIL 82 (154)
T ss_dssp HHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHHHCT
T ss_pred HHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHHhhc
Confidence 4578999999998888754333443322 7999999998332110 0112344444 56789999999998663
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A. |
| >smart00852 MoCF_biosynth Probable molybdopterin binding domain | Back alignment and domain information |
|---|
Probab=90.95 E-value=1 Score=32.05 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=31.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hc--cCCCeEEECCCCCCCCCcchhHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPGAPQDSGISLQTVLEL 57 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~--~~~dglii~GG~~~~~~~~~~~~~~~~~ 57 (192)
+.+++++.|+++.....-..+.+++ .. ..+|.||.+||-+ +...+...+.++++
T Consensus 23 l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g-~g~~D~t~~~l~~~ 82 (135)
T smart00852 23 LAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG-PGPDDVTPEAVAEA 82 (135)
T ss_pred HHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC-CCCCcCcHHHHHHH
Confidence 6788999998765443211223322 11 2689999999966 44444444445443
|
This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation. |
| >COG4090 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.64 Score=33.08 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=28.5
Q ss_pred CCCeEEECCCCCCCCCcchh--HHHHHHhCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQDSGIS--LQTVLELGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~--~~~~~~~~~~~PilGIC~G~Q~l~~~ 76 (192)
..|.+|+.||-..|.-.... .+.+.+-..++|++|+| |+-|.+.
T Consensus 85 ~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkliGvC--fm~mF~r 130 (154)
T COG4090 85 SADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKLIGVC--FMNMFER 130 (154)
T ss_pred cccEEEEEcccccCcCCCCHHHHHHHHHhcCCCceEEee--HHHHHHH
Confidence 48999999998877543322 23333334567999999 4555554
|
|
| >PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.45 Score=38.23 Aligned_cols=49 Identities=33% Similarity=0.531 Sum_probs=35.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhC---CCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG---PTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~---~~~PilGIC~G~ 70 (192)
+.++|++.|+++ +. .++|.+|..||.| .+++..+.+. .++|++||-.|.
T Consensus 20 l~~~l~~~g~~~-----~~--------~~~Dlvi~iGGDG------T~L~a~~~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 20 LKKYLKDFGFIL-----DE--------KNPDIVISVGGDG------TLLSAFHRYENQLDKVRFVGVHTGH 71 (265)
T ss_pred HHHHHHHcCCcc-----CC--------cCCCEEEEECCcH------HHHHHHHHhcccCCCCeEEEEeCCC
Confidence 556777888772 10 1679999999965 4566666544 489999999885
|
|
| >COG3340 PepE Peptidase E [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.51 Score=36.56 Aligned_cols=68 Identities=10% Similarity=0.123 Sum_probs=47.7
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhcc--CCCeEEECCCCCCCCCcc-h-----hHHHHH-HhCCCCCEEeeeHhHHHH
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRK--NPRGVLISPGPGAPQDSG-I-----SLQTVL-ELGPTVPLFGVCMGLQCI 73 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglii~GG~~~~~~~~-~-----~~~~~~-~~~~~~PilGIC~G~Q~l 73 (192)
.++|+..|+.++-++....+.+++... +.|+|++.||.- ...- . ....|+ +..+|+|.+|+-.|.-+-
T Consensus 55 ~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNT--F~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia 131 (224)
T COG3340 55 RNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNT--FNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIA 131 (224)
T ss_pred HHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchH--HHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceee
Confidence 467899999999998877888887752 689999998732 1111 0 123344 378999999988765443
|
|
| >PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.84 Score=36.49 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=38.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 70 (192)
+.+++.+.|..+...... . ....+.|.+|..||.| .+++..+.+ ++|||||-.|.
T Consensus 18 ~~~~l~~~~~~~~~~~~~-~----~~~~~~d~vi~iGGDG------T~L~a~~~~--~~Pilgin~G~ 72 (256)
T PRK14075 18 LKEKISKEHEVVEFCEAS-A----SGKVTADLIIVVGGDG------TVLKAAKKV--GTPLVGFKAGR 72 (256)
T ss_pred HHHHHHHcCCeeEeeccc-c----cccCCCCEEEEECCcH------HHHHHHHHc--CCCEEEEeCCC
Confidence 567888888876655321 1 1223789999999965 345555555 89999999885
|
|
| >TIGR02069 cyanophycinase cyanophycinase | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.79 Score=36.50 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=47.1
Q ss_pred HHHHHHhCCC-eEEEEeCCCCC---HHH-Hh-ccCCCeEEECCCCCCCC----CcchhHHHHH-HhCCCCCEEeeeHhHH
Q 029484 3 FLKYMGELGY-HFEVYRNDELT---VEE-LK-RKNPRGVLISPGPGAPQ----DSGISLQTVL-ELGPTVPLFGVCMGLQ 71 (192)
Q Consensus 3 l~~~l~~~g~-~~~v~~~~~~~---~~~-~~-~~~~dglii~GG~~~~~----~~~~~~~~~~-~~~~~~PilGIC~G~Q 71 (192)
..++++.+|+ ++.++.....+ .++ +. ..+.|+|+++||..... ....+.+.++ .+.++.|+.|+=.|.-
T Consensus 48 ~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 48 YITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred HHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHH
Confidence 4567889999 46666653211 111 11 12889999999854321 1122334454 3678999999999999
Q ss_pred HHHHH
Q 029484 72 CIGEA 76 (192)
Q Consensus 72 ~l~~~ 76 (192)
+++..
T Consensus 128 i~~~~ 132 (250)
T TIGR02069 128 VMSDT 132 (250)
T ss_pred hcccc
Confidence 88764
|
This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. |
| >PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.84 Score=37.28 Aligned_cols=61 Identities=18% Similarity=0.252 Sum_probs=40.4
Q ss_pred HHHHHHhCCCeEEEEeCCCC----------CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDEL----------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~----------~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~G~ 70 (192)
+.++|++.|+++.+...... +..++. ..+|.+|..||.|. +++..+.+ ..++|||||-.|.
T Consensus 25 i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~~GGDGt------~l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 25 LKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLG-EVCDLVIVVGGDGS------LLGAARALARHNVPVLGINRGR 96 (295)
T ss_pred HHHHHHHCCCEEEEecchhhhcCcccccccchhhcc-cCCCEEEEEeCcHH------HHHHHHHhcCCCCCEEEEeCCc
Confidence 57789999999888653110 011111 25899999999663 44444443 4789999999885
|
|
| >COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription] | Back alignment and domain information |
|---|
Probab=88.48 E-value=1 Score=37.29 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=33.5
Q ss_pred CCCeEEECCCCCCCCCc--chhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQDS--GISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~--~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.+|-+++.+|-...... ......+++ ..++.++-|||.|.-+|+++
T Consensus 76 ~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 76 PIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred cceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 37778887775544333 335566665 56899999999999999997
|
|
| >KOG4180 consensus Predicted kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.85 E-value=0.66 Score=38.14 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=38.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 66 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGI 66 (192)
+.+.|..+|++..++.-...+.+ +. ..|.||-.||.|....+. =+-+...+||+||
T Consensus 80 ~~~~l~k~giesklv~R~~lsq~-i~--waD~VisvGGDGTfL~Aa-----srv~~~~~PViGv 135 (395)
T KOG4180|consen 80 CQEELSKAGIESKLVSRNDLSQP-IR--WADMVISVGGDGTFLLAA-----SRVIDDSKPVIGV 135 (395)
T ss_pred HHHHHhhCCcceeeeehhhccCc-Cc--hhhEEEEecCccceeehh-----hhhhccCCceeee
Confidence 45677889999988864444433 44 789999999988753322 1224567999998
|
|
| >cd00885 cinA Competence-damaged protein | Back alignment and domain information |
|---|
Probab=87.81 E-value=4.7 Score=30.09 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=44.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hc--cCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~--~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~ 76 (192)
|.++|++.|+++..+..-..+.+.+ .. ..+|.||.+||-|...+ +...+.+.+. -++|+.+.---++.|-..
T Consensus 24 l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~-D~t~ea~~~~-~~~~l~~~~e~~~~i~~~ 101 (170)
T cd00885 24 LAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGPTHD-DLTREAVAKA-FGRPLVLDEEALERIEAR 101 (170)
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCC-ChHHHHHHHH-hCCCcccCHHHHHHHHHH
Confidence 6788999999886543222223322 21 26899999998554433 3333444442 247777777777777666
Q ss_pred hC
Q 029484 77 FG 78 (192)
Q Consensus 77 ~g 78 (192)
+.
T Consensus 102 ~~ 103 (170)
T cd00885 102 FA 103 (170)
T ss_pred HH
Confidence 54
|
CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin. |
| >PRK11104 hemG protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=87.63 E-value=1.6 Score=32.73 Aligned_cols=62 Identities=13% Similarity=0.042 Sum_probs=34.9
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc-chhHHHHH---HhCCCCCEEeeeHh
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVL---ELGPTVPLFGVCMG 69 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~-~~~~~~~~---~~~~~~PilGIC~G 69 (192)
.+.++. |.++.+++..+.+..++. +||.||+.++ -..... ..+..-+. ..-+++|+.-+|.|
T Consensus 22 a~~l~~-g~~v~~~~~~~~~~~~l~--~yD~vIlGsp-i~~G~~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 22 ASELKE-GIQCDVVNLHRIEEPDLS--DYDRVVIGAS-IRYGHFHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred HHHhCC-CCeEEEEEhhhcCccCHH--HCCEEEEECc-cccCCcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 444555 788888887544433444 7898666543 333222 22222222 23367898888877
|
|
| >COG4285 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.45 E-value=9.2 Score=29.87 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=31.4
Q ss_pred CCCeEEECCCCCCCCCcc---hhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCeeee
Q 029484 31 NPRGVLISPGPGAPQDSG---ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVR 83 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~---~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~v~~ 83 (192)
+-..+|++||...++... .--+.|.. +.++--.||||.|. ++|.....
T Consensus 49 ~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~-----YFg~~~ve 100 (253)
T COG4285 49 TTLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGG-----YFGSAYVE 100 (253)
T ss_pred ceEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccc-----cccceEEE
Confidence 456799999977765432 11233333 56788999999996 56665544
|
|
| >PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=86.96 E-value=1.4 Score=39.32 Aligned_cols=62 Identities=19% Similarity=0.309 Sum_probs=40.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHH----H-----HhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVE----E-----LKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~----~-----~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~G~ 70 (192)
+.+||++.|+++.+......... + ....++|.+|+.||.| .+++..+.+ ..++|||||-.|.
T Consensus 311 i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDG------T~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 311 IIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDG------TVLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred HHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcH------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 67789999998887642100000 0 0111579999999965 455666654 3689999999884
|
|
| >PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=86.85 E-value=1.7 Score=34.99 Aligned_cols=50 Identities=24% Similarity=0.263 Sum_probs=35.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhC--CCCCEEeeeH-h
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG--PTVPLFGVCM-G 69 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~--~~~PilGIC~-G 69 (192)
+.+|+++.|+++.... .++|.+|+.||.| .+++..+.+. ..+|+|||-. |
T Consensus 22 l~~~l~~~g~~~~~~~-----------~~~D~vi~lGGDG------T~L~a~~~~~~~~~~pilgIn~~G 74 (264)
T PRK03501 22 LKKIAEEYGFTVVDHP-----------KNANIIVSIGGDG------TFLQAVRKTGFREDCLYAGISTKD 74 (264)
T ss_pred HHHHHHHCCCEEEcCC-----------CCccEEEEECCcH------HHHHHHHHhcccCCCeEEeEecCC
Confidence 5678889998776321 1578999999965 4556555543 3689999999 6
|
|
| >PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=86.80 E-value=2.1 Score=35.17 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=39.0
Q ss_pred HHHHHHhCCCeEEEEeCCCC--CHH---HHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeH
Q 029484 3 FLKYMGELGYHFEVYRNDEL--TVE---ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~--~~~---~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~ 68 (192)
+.++|++.|+++.+...... +.. +.....+|.+|+.||.| .+++..+.+ ..++|++||-.
T Consensus 24 i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG------T~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 24 CAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDG------TVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred HHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcH------HHHHHHHHhccCCCCEEEEec
Confidence 56788999999887653211 000 11112589999999966 344555543 46899999998
|
|
| >cd00886 MogA_MoaB MogA_MoaB family | Back alignment and domain information |
|---|
Probab=86.12 E-value=7.2 Score=28.37 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=31.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------c--CCCeEEECCCCCCCCCcchhHHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------K--NPRGVLISPGPGAPQDSGISLQTVLE 56 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~--~~dglii~GG~~~~~~~~~~~~~~~~ 56 (192)
|.+++++.|+++.....-..+.+++.. . .+|.||.+||.+ +.+.+...+.+++
T Consensus 25 l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s-~g~~D~t~~al~~ 85 (152)
T cd00886 25 LVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG-LAPRDVTPEATRP 85 (152)
T ss_pred HHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC-CCCCcCcHHHHHH
Confidence 677899999987766432233343322 1 589999999844 4333333344444
|
Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers. |
| >cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD) | Back alignment and domain information |
|---|
Probab=85.14 E-value=4.8 Score=28.56 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=32.0
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCCCCCCCCcchhHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSGISLQTVLEL 57 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG~~~~~~~~~~~~~~~~~ 57 (192)
+.+++++.|+++.....-..+.+++.. ..+|.||.+||-+-- ..+...+.++++
T Consensus 24 l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g-~~D~t~~ai~~~ 83 (133)
T cd00758 24 LEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVG-RRDVTPEALAEL 83 (133)
T ss_pred HHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCC-CCcchHHHHHHh
Confidence 567899999988766332233333321 158999999985543 333334445443
|
This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin. |
| >PLN02727 NAD kinase | Back alignment and domain information |
|---|
Probab=84.72 E-value=2.3 Score=39.91 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=39.6
Q ss_pred HHHHHHhC-CCeEEEEeCCCC-----------------CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCE
Q 029484 3 FLKYMGEL-GYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPL 63 (192)
Q Consensus 3 l~~~l~~~-g~~~~v~~~~~~-----------------~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~Pi 63 (192)
|++||.+. |+++.+-+.... ...++. .++|.+|+.||.| .+++..+.+ ...+||
T Consensus 698 L~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~-~~~DLVIvLGGDG------TlLrAar~~~~~~iPI 770 (986)
T PLN02727 698 VASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLH-ERVDFVACLGGDG------VILHASNLFRGAVPPV 770 (986)
T ss_pred HHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcc-cCCCEEEEECCcH------HHHHHHHHhcCCCCCE
Confidence 67888887 888876532100 001111 2589999999965 455555543 467999
Q ss_pred EeeeHhH
Q 029484 64 FGVCMGL 70 (192)
Q Consensus 64 lGIC~G~ 70 (192)
|||-+|.
T Consensus 771 LGINlGr 777 (986)
T PLN02727 771 VSFNLGS 777 (986)
T ss_pred EEEeCCC
Confidence 9999884
|
|
| >cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase | Back alignment and domain information |
|---|
Probab=84.66 E-value=3.3 Score=32.13 Aligned_cols=75 Identities=16% Similarity=0.222 Sum_probs=46.3
Q ss_pred HHHHHHhCCCe-EEEEeCCC----CCHHHHh-ccCCCeEEECCCCCCCCC----cchhHHHHHH-hCCCCCEEeeeHhHH
Q 029484 3 FLKYMGELGYH-FEVYRNDE----LTVEELK-RKNPRGVLISPGPGAPQD----SGISLQTVLE-LGPTVPLFGVCMGLQ 71 (192)
Q Consensus 3 l~~~l~~~g~~-~~v~~~~~----~~~~~~~-~~~~dglii~GG~~~~~~----~~~~~~~~~~-~~~~~PilGIC~G~Q 71 (192)
+.+++++.|+. +.++..+. .+.+-.. ..+.|+|++.||.-.... ...+.+.+++ ++++.|+.|+-.|.-
T Consensus 49 ~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~ 128 (217)
T cd03145 49 YRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAA 128 (217)
T ss_pred HHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHH
Confidence 45678888985 55554431 1111111 128999999998443211 1123344443 678999999999999
Q ss_pred HHHHHh
Q 029484 72 CIGEAF 77 (192)
Q Consensus 72 ~l~~~~ 77 (192)
++...+
T Consensus 129 i~~~~~ 134 (217)
T cd03145 129 VMSDTM 134 (217)
T ss_pred hhhhcc
Confidence 988753
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. |
| >PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2 | Back alignment and domain information |
|---|
Probab=84.36 E-value=1 Score=36.43 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=26.9
Q ss_pred HhccCCCeEEECCCCCCCCCcchhHHHHHHhC-CCCCEEeeeHhH
Q 029484 27 LKRKNPRGVLISPGPGAPQDSGISLQTVLELG-PTVPLFGVCMGL 70 (192)
Q Consensus 27 ~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~-~~~PilGIC~G~ 70 (192)
....++|.+|+.||.| .+++..+.+. .++|||||-.|.
T Consensus 72 ~~~~~~D~ii~lGGDG------T~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 72 MLEEGVDLIIVLGGDG------TFLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp HHCCCSSEEEEEESHH------HHHHHHHHCTTST-EEEEEESSS
T ss_pred hcccCCCEEEEECCCH------HHHHHHHHhccCCCcEEeecCCC
Confidence 3334899999999954 4556666554 489999998874
|
7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A .... |
| >PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=84.04 E-value=0.33 Score=35.24 Aligned_cols=37 Identities=19% Similarity=0.482 Sum_probs=23.7
Q ss_pred CCCeEEECCCCCCCCCc---chhHHHHHHhCCCCCEEeeeH
Q 029484 31 NPRGVLISPGPGAPQDS---GISLQTVLELGPTVPLFGVCM 68 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~---~~~~~~~~~~~~~~PilGIC~ 68 (192)
++|.|||.||-..|.-. ....+.+.++.. ..++|||+
T Consensus 80 ~~D~vVlmGGLAMP~~~v~~e~v~~li~ki~~-~~iiGiCF 119 (147)
T PF09897_consen 80 HPDVVVLMGGLAMPKSGVTPEDVNELIKKISP-KKIIGICF 119 (147)
T ss_dssp -EEEEEEEGGGGSTTTS--HHHHHHHHHHHEE-EEEEEEEE
T ss_pred CCCEEEEEcccccCCCCCCHHHHHHHHHHhCc-CCEEEEeh
Confidence 57899999997766533 334444555432 33999995
|
; PDB: 2R47_D. |
| >TIGR00177 molyb_syn molybdenum cofactor synthesis domain | Back alignment and domain information |
|---|
Probab=84.01 E-value=7.1 Score=28.13 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=31.9
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCCCCCCCCcchhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSGISLQTVL 55 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG~~~~~~~~~~~~~~~ 55 (192)
.|.++|++.|+++.....-..+.+++.. .++|.||.+||.+.. +.+...+.+.
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g-~~D~t~~ai~ 89 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGVG-PRDVTPEALE 89 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCCC-CCccHHHHHH
Confidence 3678899999988766432223343321 168999999985543 3333334443
|
The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis. |
| >TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial | Back alignment and domain information |
|---|
Probab=83.42 E-value=8 Score=28.61 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=27.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----hc----cCCCeEEECCCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----KR----KNPRGVLISPGPGAP 44 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~~----~~~dglii~GG~~~~ 44 (192)
|..++++.|+++.....-..+.+++ .. .++|.||.+||-|..
T Consensus 27 l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g 76 (163)
T TIGR02667 27 LVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFT 76 (163)
T ss_pred HHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCC
Confidence 6778999999887664322233322 11 258999999995543
|
This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. |
| >PRK05568 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=83.40 E-value=7.3 Score=27.59 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=25.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 40 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG 40 (192)
+.+.+++.|.+++++...+.+..++. ++|+|++.-.
T Consensus 22 i~~~~~~~g~~v~~~~~~~~~~~~~~--~~d~iilgsp 57 (142)
T PRK05568 22 IAEGAKENGAEVKLLNVSEASVDDVK--GADVVALGSP 57 (142)
T ss_pred HHHHHHHCCCeEEEEECCCCCHHHHH--hCCEEEEECC
Confidence 45566778999999988666666666 7887777543
|
|
| >PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=82.72 E-value=2.8 Score=33.82 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=35.1
Q ss_pred HHHHHHhCCCeEEEEeCCCC--C--HHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHh
Q 029484 3 FLKYMGELGYHFEVYRNDEL--T--VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 69 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~--~--~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G 69 (192)
+.+|+ ..|+++.+...... . ..+....++|.+|..||.|. +++..+.+. .|||||-.|
T Consensus 21 i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT------~L~a~~~~~--~PilGIN~G 82 (271)
T PRK01185 21 IIELL-PPDWEIIYEMEAAKALGMDGLDIEEINADVIITIGGDGT------ILRTLQRAK--GPILGINMG 82 (271)
T ss_pred HHHHH-hcCCEEEEechhhhhcCcccCcccccCCCEEEEEcCcHH------HHHHHHHcC--CCEEEEECC
Confidence 55677 56887766532100 0 00111226899999999663 455555443 599999998
|
|
| >PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins | Back alignment and domain information |
|---|
Probab=82.48 E-value=1.8 Score=28.17 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=27.8
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 44 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~ 44 (192)
++.++|++.|++|+..... .++. .+|++|++|...+.
T Consensus 12 ~v~~~L~~~GyeVv~l~~~----~~~~--~~daiVvtG~~~n~ 48 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENE----QDLQ--NVDAIVVTGQDTNM 48 (80)
T ss_pred HHHHHHHHCCCEEEecCCc----cccC--CcCEEEEECCCccc
Confidence 5788999999999888642 1222 79999999975543
|
|
| >COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.12 E-value=7.1 Score=31.22 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=32.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCCCCCCCCcc
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSG 48 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG~~~~~~~~ 48 (192)
|++.|.+.|+++..+..--.+.++|.. .++|-||++||-|-..|+-
T Consensus 26 la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGPT~DDi 77 (255)
T COG1058 26 LADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLGPTHDDL 77 (255)
T ss_pred HHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCCCccHh
Confidence 678899999998776543333444321 2699999999988766553
|
|
| >COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=81.91 E-value=2.5 Score=31.42 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=37.7
Q ss_pred CCCeEEECCCCCCCCCcch-------------hHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCee
Q 029484 31 NPRGVLISPGPGAPQDSGI-------------SLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKI 81 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~-------------~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~v 81 (192)
.+|++|++||.|....... +...... -+.++|+=-||..=-|+...+|..+
T Consensus 85 ~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~ 149 (217)
T COG3155 85 ELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPL 149 (217)
T ss_pred hcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCce
Confidence 6899999999997643222 2233333 3689999999999999999988544
|
|
| >PRK03094 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.16 E-value=2.1 Score=27.80 Aligned_cols=37 Identities=8% Similarity=0.182 Sum_probs=27.2
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 44 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~ 44 (192)
++.++|++.|++|+-+... .+. ..+|++|++|-..+.
T Consensus 12 ~i~~~L~~~GYeVv~l~~~----~~~--~~~Da~VitG~d~n~ 48 (80)
T PRK03094 12 DVQQALKQKGYEVVQLRSE----QDA--QGCDCCVVTGQDSNV 48 (80)
T ss_pred HHHHHHHHCCCEEEecCcc----ccc--CCcCEEEEeCCCcce
Confidence 4788999999999888631 112 279999999965543
|
|
| >PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed | Back alignment and domain information |
|---|
Probab=81.01 E-value=2.1 Score=34.07 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=26.4
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhH
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL 70 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~ 70 (192)
++|.+|..||.| .+++..+. ...++|||||-.|.
T Consensus 25 ~~Dlvi~iGGDG------TlL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 25 EADVIVALGGDG------FMLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred cCCEEEEECCCH------HHHHHHHHhcCCCCeEEEEeCCC
Confidence 679999999965 45666665 35689999999875
|
|
| >PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional | Back alignment and domain information |
|---|
Probab=80.90 E-value=2.2 Score=34.23 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=26.1
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeHhH
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 70 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~G~ 70 (192)
++|.+|..||.| .+++..+.+ ..++|||||-.|.
T Consensus 33 ~~D~vi~iGGDG------T~L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 33 GADYLFVLGGDG------FFVSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred CCCEEEEECCcH------HHHHHHHHhcCCCCcEEEEecCC
Confidence 679999999965 455666554 4789999999873
|
|
| >PLN02935 Bifunctional NADH kinase/NAD(+) kinase | Back alignment and domain information |
|---|
Probab=80.84 E-value=5.6 Score=34.95 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=38.3
Q ss_pred HHHHHH-hCCCeEEEEeCCCC----------------CHHHH--hccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCC
Q 029484 3 FLKYMG-ELGYHFEVYRNDEL----------------TVEEL--KRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVP 62 (192)
Q Consensus 3 l~~~l~-~~g~~~~v~~~~~~----------------~~~~~--~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~P 62 (192)
+.+||+ ..|+++.+.+.... +..++ ...++|.+|..||.| .+++..+.+ ...+|
T Consensus 215 I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGDG------TlL~Aar~~~~~~iP 288 (508)
T PLN02935 215 MVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGDG------TVLWAASMFKGPVPP 288 (508)
T ss_pred HHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEECCcH------HHHHHHHHhccCCCc
Confidence 567888 48888877542100 00111 112689999999965 455655554 35799
Q ss_pred EEeeeHh
Q 029484 63 LFGVCMG 69 (192)
Q Consensus 63 ilGIC~G 69 (192)
||||-.|
T Consensus 289 ILGIN~G 295 (508)
T PLN02935 289 VVPFSMG 295 (508)
T ss_pred EEEEeCC
Confidence 9999977
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 192 | ||||
| 1qdl_B | 195 | The Crystal Structure Of Anthranilate Synthase From | 1e-30 | ||
| 1i7q_B | 193 | Anthranilate Synthase From S. Marcescens Length = 1 | 2e-23 | ||
| 1i1q_B | 192 | Structure Of The Cooperative Allosteric Anthranilat | 2e-21 | ||
| 1wl8_A | 189 | Crystal Structure Of Ph1346 Protein From Pyrococcus | 8e-12 | ||
| 2d7j_A | 209 | Crystal Structure Analysis Of Glutamine Amidotransf | 1e-11 | ||
| 1gpm_A | 525 | Escherichia Coli Gmp Synthetase Complexed With Amp | 7e-11 | ||
| 2ywb_A | 503 | Crystal Structure Of Gmp Synthetase From Thermus Th | 3e-08 | ||
| 2ywc_A | 503 | Crystal Structure Of Gmp Synthetase From Thermus Th | 6e-08 | ||
| 1m6v_B | 382 | Crystal Structure Of The G359f (Small Subunit) Poin | 7e-08 | ||
| 1t36_B | 382 | Crystal Structure Of E. Coli Carbamoyl Phosphate Sy | 1e-07 | ||
| 2vpi_A | 218 | Human Gmp Synthetase - Glutaminase Domain Length = | 1e-07 | ||
| 1jdb_C | 382 | Carbamoyl Phosphate Synthetase From Escherichia Col | 2e-07 | ||
| 2vxo_A | 697 | Human Gmp Synthetase In Complex With Xmp Length = 6 | 3e-07 | ||
| 1c30_B | 382 | Crystal Structure Of Carbamoyl Phosphate Synthetase | 4e-06 | ||
| 1cs0_B | 382 | Crystal Structure Of Carbamoyl Phosphate Synthetase | 5e-06 | ||
| 3tqi_A | 527 | Structure Of The Gmp Synthase (Guaa) From Coxiella | 3e-05 | ||
| 1a9x_B | 379 | Carbamoyl Phosphate Synthetase: Caught In The Act O | 3e-05 | ||
| 3uow_A | 556 | Crystal Structure Of Pf10_0123, A Gmp Synthetase Fr | 3e-05 | ||
| 2a9v_A | 212 | Crystal Structure Of A Putative Gmp Synthase Subuni | 2e-04 |
| >pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From Sulfolobus Solfataricus Length = 195 | Back alignment and structure |
|
| >pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens Length = 193 | Back alignment and structure |
|
| >pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate Synthase From Salmonella Typhimurium Length = 192 | Back alignment and structure |
|
| >pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus Horikoshii Length = 189 | Back alignment and structure |
|
| >pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase From Pyrococcus Horikoshii Ot3 Length = 209 | Back alignment and structure |
|
| >pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And Pyrophosphate Length = 525 | Back alignment and structure |
|
| >pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus Thermophilus Length = 503 | Back alignment and structure |
|
| >pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus Thermophilus In Complex With Xmp Length = 503 | Back alignment and structure |
|
| >pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point Mutant Of Carbamoyl Phosphate Synthetase Length = 382 | Back alignment and structure |
|
| >pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248d Complexed With Uridine 5'-Monophosphate Length = 382 | Back alignment and structure |
|
| >pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain Length = 218 | Back alignment and structure |
|
| >pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 382 | Back alignment and structure |
|
| >pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp Length = 697 | Back alignment and structure |
|
| >pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s Length = 382 | Back alignment and structure |
|
| >pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-glutamate Gamma-semialdehyde Length = 382 | Back alignment and structure |
|
| >pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella Burnetii Length = 527 | Back alignment and structure |
|
| >pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of Glutamine Hydrolysis Length = 379 | Back alignment and structure |
|
| >pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From Plasmodium Falciparum Length = 556 | Back alignment and structure |
|
| >pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45 A Resolution Length = 212 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 192 | |||
| 1qdl_B | 195 | Protein (anthranilate synthase (TRPG-SUBUNIT)); tr | 5e-92 | |
| 1i1q_B | 192 | Anthranilate synthase component II; tryptophan bio | 1e-87 | |
| 3r75_A | 645 | Anthranilate/para-aminobenzoate synthases compone; | 9e-36 | |
| 1l9x_A | 315 | Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO | 2e-31 | |
| 1wl8_A | 189 | GMP synthase [glutamine-hydrolyzing] subunit A; tr | 2e-21 | |
| 2ywb_A | 503 | GMP synthase [glutamine-hydrolyzing]; GMP syntheta | 4e-21 | |
| 1gpm_A | 525 | GMP synthetase, XMP aminase; class I glutamine ami | 4e-21 | |
| 2vxo_A | 697 | GMP synthase [glutamine-hydrolyzing]; proto-oncoge | 6e-21 | |
| 3tqi_A | 527 | GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 | 7e-21 | |
| 2vpi_A | 218 | GMP synthase; guanine monophosphate synthetase, ph | 2e-19 | |
| 2a9v_A | 212 | GMP synthase; structural genomics, joint center fo | 1e-17 | |
| 3uow_A | 556 | GMP synthetase; structural genomics consortium, SG | 2e-17 | |
| 1o1y_A | 239 | Conserved hypothetical protein TM1158; flavodoxin- | 1e-14 | |
| 3l7n_A | 236 | Putative uncharacterized protein; glutamine amidot | 7e-11 | |
| 2ywd_A | 191 | Glutamine amidotransferase subunit PDXT; pyridoxin | 1e-10 | |
| 3m3p_A | 250 | Glutamine amido transferase; structural genomics, | 1e-10 | |
| 1q7r_A | 219 | Predicted amidotransferase; structural genomics, Y | 5e-10 | |
| 3fij_A | 254 | LIN1909 protein; 11172J, uncharacterized protein, | 2e-09 | |
| 2nv0_A | 196 | Glutamine amidotransferase subunit PDXT; 3-layer(A | 3e-09 | |
| 1a9x_B | 379 | Carbamoyl phosphate synthetase (small chain); amid | 2e-08 | |
| 2ywj_A | 186 | Glutamine amidotransferase subunit PDXT; uncharact | 5e-08 | |
| 2iss_D | 208 | Glutamine amidotransferase subunit PDXT; (beta/alp | 6e-06 | |
| 2abw_A | 227 | PDX2 protein, glutaminase; PLP-synthase, vitamin B | 6e-05 |
| >1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 Length = 195 | Back alignment and structure |
|---|
Score = 265 bits (681), Expect = 5e-92
Identities = 74/180 (41%), Positives = 108/180 (60%), Gaps = 7/180 (3%)
Query: 6 YMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLELGPTVP 62
+GELG + V RNDE++++ ++R +P ++ISPGPG P +D G+SL + LG P
Sbjct: 20 IVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTP 79
Query: 63 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSL 122
+ GVC+G Q IG AFG KI R+ V HGK S + L G++ F A RYHSL
Sbjct: 80 ILGVCLGHQAIGYAFGAKIRRARK-VFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSL 138
Query: 123 VIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182
V+++ P ++ + ED IMA H++Y + GVQFHPES+ T+ G I+ NF+ +
Sbjct: 139 VVDEVHRP-LIVDAISA-EDNEIMAIHHEEYP-IYGVQFHPESVGTSLGYKILYNFLNRV 195
|
| >1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Length = 192 | Back alignment and structure |
|---|
Score = 254 bits (652), Expect = 1e-87
Identities = 58/183 (31%), Positives = 102/183 (55%), Gaps = 12/183 (6%)
Query: 6 YMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP 62
+ G++ +YRN + ++ L +++SPGPG P ++G + + L +P
Sbjct: 19 QLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLP 78
Query: 63 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSL 122
+ G+C+G Q I EA+GG + ++ ++HGK++ + +D + + AGL+NP RYHSL
Sbjct: 79 IIGICLGHQAIVEAYGGYVGQAGE-ILHGKATSIEHDGQ---AMFAGLANPLPVARYHSL 134
Query: 123 VIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182
V + P L + A +G++MA RH + + G QFHPESI+TT+G ++ +
Sbjct: 135 VG--SNVP-AGLTINAHF-NGMVMAVRHDADR-VCGFQFHPESILTTQGARLLEQTLAWA 189
Query: 183 VRK 185
+K
Sbjct: 190 QQK 192
|
| >3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* Length = 645 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 9e-36
Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 30/197 (15%)
Query: 6 YMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE------LGP 59
+ LG EV + + V++ PGPG P D+G L +
Sbjct: 465 QLSSLGLATEVCGVHDA----VDLARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDE 520
Query: 60 TVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRY 119
P VC+ Q + G +VR + G + G Y
Sbjct: 521 GKPFMAVCLSHQILNAILGIPLVRREV-PNQGIQVEI-----------DLFGQRERVGFY 568
Query: 120 HSLVIEKESFPSD-----ALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTI 174
++ V + D + ++ G + A R +QFH ES++T +G I
Sbjct: 569 NTYVAQTVRDEMDVDGVGTVAISRDPRTGEVHALRGP---TFSSMQFHAESVLTVDGPRI 625
Query: 175 VRNFIKMIVRKEAADSQ 191
+ I +R+E +
Sbjct: 626 LGEAITHAIRREKRMTA 642
|
| >1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 Length = 315 | Back alignment and structure |
|---|
Score = 115 bits (288), Expect = 2e-31
Identities = 31/209 (14%), Positives = 59/209 (28%), Gaps = 29/209 (13%)
Query: 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTV-------- 54
++KY+ G R D + ++ PG +
Sbjct: 57 YVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSI 116
Query: 55 --LELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGED-------- 104
+ G P++G C+G + + G+ + + + + +
Sbjct: 117 QSFDDGDYFPVWGTCLGFEELSLLISGECLLT-ATDTVDVAMPLNFTGGQLHSRMFQNFP 175
Query: 105 -GLLAGLSNPFTAGRYHSLVIEKESFP-----SDALEVTAWTEDGL---IMAARHKKYKH 155
LL L+ +H + ++F V DG I KY
Sbjct: 176 TELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYP- 234
Query: 156 LQGVQFHPESIITTEGKTIVRNFIKMIVR 184
+ GVQ+HPE + V+
Sbjct: 235 VYGVQWHPEKAPYEWKNLDGISHAPNAVK 263
|
| >1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A Length = 189 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 2e-21
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 21/178 (11%)
Query: 9 ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 62
LG ++ N +EE+K NP+G++ S GP + + E VP
Sbjct: 22 YLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSLENTGNCEKVL----EHYDEFN--VP 74
Query: 63 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSL 122
+ G+C+G Q I + FGGK+ R + + E + GL H
Sbjct: 75 ILGICLGHQLIAKFFGGKVGRGEKA-EYSLVEIEI---IDEXEIFKGLPKRLKVWESHMD 130
Query: 123 VIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180
+++ ++ A +E I A +H++ + GVQFHPE T +G+ I+RNF K
Sbjct: 131 EVKE---LPPKFKILARSETCPIEAMKHEE-LPIYGVQFHPEVAHTEKGEEILRNFAK 184
|
| >2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Length = 503 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 4e-21
Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 26/180 (14%)
Query: 9 ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 62
EL + D +EE+ + P+ +++S GP AP+ + G +P
Sbjct: 21 ELRAFSLILPGD-APLEEVLKHRPQALILSGGPRSVFDPDAPRPD----PRLFSSG--LP 73
Query: 63 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSL 122
L G+C G+Q + + GG++ R+ +GK+ L + E L GL H
Sbjct: 74 LLGICYGMQLLAQELGGRVERAGRA-EYGKALL----TRHEGPLFRGLEGEVQVWMSHQD 128
Query: 123 VIEK--ESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180
+ + V A TE+ + A GVQFHPE T +G I+ NF++
Sbjct: 129 AVTAPPPGW-----RVVAETEENPVAAIASPD-GRAYGVQFHPEVAHTPKGMQILENFLE 182
|
| >1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Length = 525 | Back alignment and structure |
|---|
Score = 88.7 bits (221), Expect = 4e-21
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 33/190 (17%)
Query: 9 ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 62
ELG + E++ D +T +++ NP G+++S GP +P+ Q V E G VP
Sbjct: 29 ELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSPRAP----QYVFEAG--VP 81
Query: 63 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRY--- 119
+FGVC G+Q + GG + S G + + + L+ G+ + TA
Sbjct: 82 VFGVCYGMQTMAMQLGGHVEASNER-EFGYAQVEV---VNDSALVRGIEDALTADGKPLL 137
Query: 120 -----HSLVIEK--ESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGK 172
H + F A TE +++ K GVQFHPE T +G
Sbjct: 138 DVWMSHGDKVTAIPSDF-----ITVASTESCPFAIMANEE-KRFYGVQFHPEVTHTRQGM 191
Query: 173 TIVRNFIKMI 182
++ F++ I
Sbjct: 192 RMLERFVRDI 201
|
| >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Length = 697 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 6e-21
Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 24/181 (13%)
Query: 9 ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQ-DSGISLQTVLELGPTV 61
EL E++ + +K + R ++IS GP AP D I +G
Sbjct: 51 ELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAI-----FTIG--K 102
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 121
P+ G+C G+Q + + FGG + + + G ++ L GL H
Sbjct: 103 PVLGICYGMQMMNKVFGGTVHKKSVR-EDGVFNISV---DNTCSLFRGLQKEEVVLLTHG 158
Query: 122 LVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
++K +D +V A + + I+A + K L G QFHPE +T GK I++NF+
Sbjct: 159 DSVDK---VADGFKVVARSGN--IVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYD 213
Query: 182 I 182
I
Sbjct: 214 I 214
|
| >3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Length = 527 | Back alignment and structure |
|---|
Score = 88.3 bits (220), Expect = 7e-21
Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 33/190 (17%)
Query: 9 ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 62
E+G + E+ D + E ++ NP G+++S GP + + E+G P
Sbjct: 32 EIGVYCELMPCD-IDEETIRDFNPHGIILSGGPETVTLSHTLRAP----AFIFEIG--CP 84
Query: 63 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRY--- 119
+ G+C G+Q + GGK+ R+ G + L L G+ + +
Sbjct: 85 VLGICYGMQTMAYQLGGKVNRTAKA-EFGHAQLRV---LNPAFLFDGIEDQVSPQGEPLL 140
Query: 120 -----HSLVIEK--ESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGK 172
H ++ + F E TA T++ + A K + G+QFHPE T +G
Sbjct: 141 DVWMSHGDIVSELPPGF-----EATACTDNSPLAAMADFK-RRFFGLQFHPEVTHTPQGH 194
Query: 173 TIVRNFIKMI 182
I+ +F+ I
Sbjct: 195 RILAHFVIHI 204
|
| >2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 2e-19
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 26/182 (14%)
Query: 9 ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVP 62
EL E++ + +K + R ++IS GP AP + +G P
Sbjct: 46 ELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAPWFD----PAIFTIG--KP 98
Query: 63 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSL 122
+ G+C G+Q + + FGG + + + G ++ L GL H
Sbjct: 99 VLGICYGMQMMNKVFGGTVHKKSVR-EDGVFNISV---DNTCSLFRGLQKEEVVLLTHGD 154
Query: 123 VIEK--ESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180
++K + F +V A + + I+A + K L G QFHPE +T GK I++NF+
Sbjct: 155 SVDKVADGF-----KVVARSGN--IVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLY 207
Query: 181 MI 182
I
Sbjct: 208 DI 209
|
| >2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 Length = 212 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 1e-17
Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 35/185 (18%)
Query: 9 ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP--------GAPQDSGISLQTVLELGPT 60
ELG ++ ND + EL G+++S G + + +
Sbjct: 35 ELGVDTKIVPND-IDSSELD--GLDGLVLSGGAPNIDEELDKLGSVG----KYIDDHN-- 85
Query: 61 VPLFGVCMGLQCIGEAFGGKIVRSPLGVMH---GKSSLVYYDEKGEDGLLAGLSNPFTAG 117
P+ G+C+G Q I FG +V++ H GK+ + + + GL + T
Sbjct: 86 YPILGICVGAQFIALHFGASVVKAK----HPEFGKTKV---SVMHSENIFGGLPSEITVW 138
Query: 118 RYHSLVIEK--ESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV 175
H+ I + F + A + + HK + + QFHPE T G+ I
Sbjct: 139 ENHNDEIINLPDDF-----TLAASSATCQVQGFYHKT-RPIYATQFHPEVEHTQYGRDIF 192
Query: 176 RNFIK 180
RNFI
Sbjct: 193 RNFIG 197
|
| >3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Length = 556 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 2e-17
Identities = 38/208 (18%), Positives = 79/208 (37%), Gaps = 41/208 (19%)
Query: 9 ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPT-- 60
+ E + ++++K N +GV++S GP G+P + V E
Sbjct: 29 NIKIFSETKDYG-VELKDIKDMNIKGVILSGGPYSVTEAGSPHLK----KEVFEYFLEKK 83
Query: 61 VPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYH 120
+P+FG+C G+Q I G++ +S +G + + + + + ++
Sbjct: 84 IPIFGICYGMQEIAVQMNGEVKKSKTS-EYGCTDVNILRNDNINNITYCRNFGDSSSAMD 142
Query: 121 SLVIEKESFPSDAL--------------------------EVTAWTEDGLIMAARHKKYK 154
K + L + + +E+ LI + +K+
Sbjct: 143 LYSNYKLMNETCCLFENIKSDITTVWMNHNDEVTKIPENFYLVSSSENCLICSIYNKE-Y 201
Query: 155 HLQGVQFHPESIITTEGKTIVRNFIKMI 182
++ GVQ+HPE + +G+ + NF I
Sbjct: 202 NIYGVQYHPEVYESLDGELMFYNFAYNI 229
|
| >1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 Length = 239 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 1e-14
Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 21/172 (12%)
Query: 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP-GAPQDSGIS--------LQ 52
E + F+ + E + V++ G GA ++ ++
Sbjct: 28 MMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIE 87
Query: 53 TVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN 112
+L+ +P G+C+G Q + + G + R G G + ++ ++ +
Sbjct: 88 EILKKE--IPFLGICLGSQMLAKVLGASVYRGKNGEEIGWYFV---EKVSDNKFFREFPD 142
Query: 113 PFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPE 164
++H + P A +E Y G+QFH E
Sbjct: 143 RLRVFQWHGDTFDL---PRRA-TRVFTSEKYENQGFV---YGKAVGLQFHIE 187
|
| >3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans} Length = 236 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 7e-11
Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 21/174 (12%)
Query: 3 FLKYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSGIS---LQTVLE- 56
+L + G+ + + E+L + + +++ GP +P + E
Sbjct: 17 YLAWAALRGHDVSMTKVYR--YEKLPKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEV 74
Query: 57 ------LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGL 110
+ GVC+G Q +G A+G + SP G + + D L+
Sbjct: 75 KLIQKAAKSEKIIVGVCLGAQLMGVAYGADYLHSP-KKEIGNYLISLTEAGKMDSYLSDF 133
Query: 111 SNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPE 164
S+ G +H + P A +V A ++ + Q H E
Sbjct: 134 SDDLLVGHWHGDMPG---LPDKA-QVLAISQGCPRQIIKFG--PKQYAFQCHLE 181
|
| >2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} Length = 191 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 1e-10
Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 22/159 (13%)
Query: 35 VLISPGPGAP------QDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPL 86
LI PG + ++ GI ++ +E G ++ LFG C G + + G + L
Sbjct: 42 ALIVPGGESTTIGKLAREYGIEDEVRKRVEEG-SLALFGTCAGAIWLAKEIVGYPEQPRL 100
Query: 87 GVMHGKSSLVYYDEKG---EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG 143
GV+ + + E+ L F + V + + +EV A
Sbjct: 101 GVLEAWVERNAFGRQVESFEEDLEVEGLGSFHGVFIRAPVFRR---LGEGVEVLAR-LGD 156
Query: 144 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182
L + R + FHPE TE + R F+++
Sbjct: 157 LPVLVRQ---GKVLASSFHPEL---TEDPRLHRYFLELA 189
|
| >3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* Length = 250 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 1e-10
Identities = 34/172 (19%), Positives = 59/172 (34%), Gaps = 23/172 (13%)
Query: 3 FLKYMGELGYHFEVYR--NDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--- 57
F ++ F+V R + E++ + G+ + GP + D + T+L L
Sbjct: 20 FGDFLAGEHIPFQVLRMDRSDPLPAEIR--DCSGLAMMGGPMSANDDLPWMPTLLALIRD 77
Query: 58 --GPTVPLFGVCMGLQCIGEAFGGKIVRSP---LGVMHGKSSLVYYDEKGEDGLLAGLSN 112
VP+ G C+G Q + +A GG++ SP +G + + + G +
Sbjct: 78 AVAQRVPVIGHCLGGQLLAKAMGGEVTDSPHAEIGWVR-----AWPQHVPQALEWLGTWD 132
Query: 113 PFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPE 164
+H P A +E A G Q H E
Sbjct: 133 ELELFEWHYQTFSI---PPGA-VHILRSEHCANQAYVLD--DLHIGFQCHIE 178
|
| >1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1 Length = 219 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 5e-10
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 15/133 (11%)
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE----DGLLAGLSNPFTAG 117
P+FG C GL + + G LG+M + + E + + G+ + F
Sbjct: 96 PMFGTCAGLILLAKRIVGYDEP-HLGLMDITVERNSFGRQRESFEAELSIKGVGDGFVGV 154
Query: 118 RYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRN 177
+ I + D ++V A T + I+AAR G FHPE T+ +++
Sbjct: 155 FIRAPHIVE---AGDGVDVLA-TYNDRIVAARQG---QFLGCSFHPEL---TDDHRLMQY 204
Query: 178 FIKMIVRKEAADS 190
F+ M+ + A S
Sbjct: 205 FLNMVKEAKMASS 217
|
| >3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} Length = 254 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-09
Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 16/133 (12%)
Query: 61 VPLFGVCMGLQCIGEAFGGKIVR-----SPLGVMHGKSSLVYYDEKG----EDGLLAGLS 111
P+F +C G+Q + A GG + + + H + LA
Sbjct: 109 KPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHH 168
Query: 112 NPFTAGR-YHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKH-LQGVQFHPESIITT 169
H I+K + + +VTA T DG+I A GVQ+HPE + T
Sbjct: 169 PNKKLVNSLHHQFIKK---LAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQT 225
Query: 170 --EGKTIVRNFIK 180
E + + + +
Sbjct: 226 DPESEQLFQALVD 238
|
| >2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B* Length = 196 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 3e-09
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK----GEDGLLAGLSNPFTAG 117
P+FG C GL + + G LG+++ + + D + GL PFT
Sbjct: 74 PMFGTCAGLIILAKEIAGSDNP-HLGLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTGV 132
Query: 118 RYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRN 177
+ I + + +EV + +G I+AA+ G FHPE TE + +
Sbjct: 133 FIRAPHILE---AGENVEVLS-EHNGRIVAAKQG---QFLGCSFHPEL---TEDHRVTQL 182
Query: 178 FIKMI 182
F++M+
Sbjct: 183 FVEMV 187
|
| >1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* Length = 379 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 2e-08
Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 40/158 (25%)
Query: 23 TVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAFGG 79
+ E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+C+G Q + A G
Sbjct: 223 SAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETD--IPVFGICLGHQLLALASGA 280
Query: 80 KIVRSPLG-------VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSD 132
K V+ G V + ++V TA + H +++ + P++
Sbjct: 281 KTVKMKFGHHGGNHPVKDVEKNVVM----------------ITA-QNHGFAVDEATLPAN 323
Query: 133 ALEVTAWTE-----DGLIMAARHKKYKHLQGVQFHPES 165
L VT DG + Q +PE+
Sbjct: 324 -LRVT----HKSLFDGTLQGIHRTDKP-AFSFQGNPEA 355
|
| >2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii} Length = 186 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 5e-08
Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 23/132 (17%)
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYY----DEKGEDGLLAGLSNPFTAG 117
P+ G C G+ + + G + L +M Y D ++ L
Sbjct: 70 PILGTCAGMVLLSKGTGIN--QILLELMDITVKRNAYGRQVDSFEKEIEFKDLGK----V 123
Query: 118 RY----HSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKT 173
+V + S D +EV A + I+ + + FHPE ++ +G
Sbjct: 124 YGVFIRAPVVDKILS---DDVEVIA-RDGDKIVGVKQG---KYMALSFHPE--LSEDGYK 174
Query: 174 IVRNFIKMIVRK 185
+ + F++ V+K
Sbjct: 175 VYKYFVENCVKK 186
|
| >2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima} Length = 208 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 6e-06
Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 14/125 (11%)
Query: 62 PLFGVCMGLQCIGEAFGGKIVRS----PLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAG 117
P+F C G+ + + + V + + A +PF A
Sbjct: 93 PVFATCAGVILLAKRIKNYSQEKLGVLDITVERNAYGRQVESFETFVEIPAVGKDPFRAI 152
Query: 118 RYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRN 177
+ I + +E+ A T D + + ++ FHPE T+ + R
Sbjct: 153 FIRAPRIVE---TGKNVEILA-TYDYDPVLVKEG---NILACTFHPEL---TDDLRLHRY 202
Query: 178 FIKMI 182
F++M+
Sbjct: 203 FLEMV 207
|
| >2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G Length = 227 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 6e-05
Identities = 26/175 (14%), Positives = 47/175 (26%), Gaps = 36/175 (20%)
Query: 36 LISPGPGAPQDSGISLQTVLEL---------GPTVPLFGVCMGLQCIGEAFGGKIVRS-- 84
L+ PG + L P++G C G + + + S
Sbjct: 47 LVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNF 106
Query: 85 ----PLGVMHGKSSLVYYDEKGE--------DGLLAGLSNPFTAGRYHSLVIEKESFPSD 132
G + +Y + + + TA + I + SD
Sbjct: 107 GNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFKKDLTAACIRAPYIRE--ILSD 164
Query: 133 ALEVTAWTED-----GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182
++V A +I A + G FHPE + F + +
Sbjct: 165 EVKVLATFSHESYGPNIIAAVEQN---NCLGTVFHPEL---LPHTAFQQYFYEKV 213
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 192 | |||
| 1qdl_B | 195 | Protein (anthranilate synthase (TRPG-SUBUNIT)); tr | 100.0 | |
| 1i1q_B | 192 | Anthranilate synthase component II; tryptophan bio | 100.0 | |
| 1wl8_A | 189 | GMP synthase [glutamine-hydrolyzing] subunit A; tr | 100.0 | |
| 2a9v_A | 212 | GMP synthase; structural genomics, joint center fo | 100.0 | |
| 2vpi_A | 218 | GMP synthase; guanine monophosphate synthetase, ph | 100.0 | |
| 1a9x_B | 379 | Carbamoyl phosphate synthetase (small chain); amid | 100.0 | |
| 3tqi_A | 527 | GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 | 100.0 | |
| 1gpm_A | 525 | GMP synthetase, XMP aminase; class I glutamine ami | 100.0 | |
| 2ywb_A | 503 | GMP synthase [glutamine-hydrolyzing]; GMP syntheta | 100.0 | |
| 3uow_A | 556 | GMP synthetase; structural genomics consortium, SG | 100.0 | |
| 3fij_A | 254 | LIN1909 protein; 11172J, uncharacterized protein, | 100.0 | |
| 1o1y_A | 239 | Conserved hypothetical protein TM1158; flavodoxin- | 99.98 | |
| 2vxo_A | 697 | GMP synthase [glutamine-hydrolyzing]; proto-oncoge | 99.97 | |
| 3l7n_A | 236 | Putative uncharacterized protein; glutamine amidot | 99.97 | |
| 3m3p_A | 250 | Glutamine amido transferase; structural genomics, | 99.97 | |
| 3r75_A | 645 | Anthranilate/para-aminobenzoate synthases compone; | 99.97 | |
| 4gud_A | 211 | Imidazole glycerol phosphate synthase subunit His; | 99.97 | |
| 1l9x_A | 315 | Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO | 99.97 | |
| 2ywj_A | 186 | Glutamine amidotransferase subunit PDXT; uncharact | 99.96 | |
| 3d54_D | 213 | Phosphoribosylformylglycinamidine synthase 1; alph | 99.96 | |
| 2w7t_A | 273 | CTP synthetase, putative cytidine triphosphate syn | 99.96 | |
| 2v4u_A | 289 | CTP synthase 2; pyrimidine biosynthesis, glutamine | 99.95 | |
| 1s1m_A | 545 | CTP synthase; CTP synthetase, UTP:ammonia ligase ( | 99.95 | |
| 1vco_A | 550 | CTP synthetase; tetramer, riken structural genomic | 99.95 | |
| 2nv0_A | 196 | Glutamine amidotransferase subunit PDXT; 3-layer(A | 99.94 | |
| 1gpw_B | 201 | Amidotransferase HISH; lyase/transferase, complex | 99.94 | |
| 1q7r_A | 219 | Predicted amidotransferase; structural genomics, Y | 99.93 | |
| 3nva_A | 535 | CTP synthase; rossman fold, nucleotide binding, LI | 99.93 | |
| 1ka9_H | 200 | Imidazole glycerol phosphtate synthase; riken stru | 99.93 | |
| 2ywd_A | 191 | Glutamine amidotransferase subunit PDXT; pyridoxin | 99.93 | |
| 2iss_D | 208 | Glutamine amidotransferase subunit PDXT; (beta/alp | 99.92 | |
| 2abw_A | 227 | PDX2 protein, glutaminase; PLP-synthase, vitamin B | 99.9 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 99.89 | |
| 2h2w_A | 312 | Homoserine O-succinyltransferase; TM0881, (EC 2.3. | 99.87 | |
| 2vdj_A | 301 | Homoserine O-succinyltransferase; methionine biosy | 99.87 | |
| 3ugj_A | 1303 | Phosphoribosylformylglycinamidine synthase; amidot | 99.5 | |
| 1fy2_A | 229 | Aspartyl dipeptidase; serine protease, catalytic t | 98.51 | |
| 3l4e_A | 206 | Uncharacterized peptidase LMO0363; hypothetical pr | 98.47 | |
| 4hcj_A | 177 | THIJ/PFPI domain protein; structural genomics, PSI | 98.21 | |
| 1oi4_A | 193 | Hypothetical protein YHBO; PFPI/THIJ family, compl | 98.21 | |
| 1vhq_A | 232 | Enhancing lycopene biosynthesis protein 2; structu | 98.02 | |
| 3l18_A | 168 | Intracellular protease I; gatase1_PFPI_LIKE, hydro | 98.0 | |
| 3l3b_A | 242 | ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, | 97.81 | |
| 2rk3_A | 197 | Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha | 97.79 | |
| 2ab0_A | 205 | YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase | 97.77 | |
| 2vrn_A | 190 | Protease I, DR1199; cysteine sulfenic acid, DJ-1/T | 97.73 | |
| 3ej6_A | 688 | Catalase-3; heme, hydrogen iron, metal-binding, ox | 97.62 | |
| 4e08_A | 190 | DJ-1 beta; flavodoxin-like fold, stress response, | 97.62 | |
| 3f5d_A | 206 | Protein YDEA; unknow protein, PSI-II, nysgrc, stru | 97.56 | |
| 1u9c_A | 224 | APC35852; structural genomics, protein structure i | 97.55 | |
| 3cne_A | 175 | Putative protease I; structural genomics, PSI-2, M | 97.55 | |
| 2fex_A | 188 | Conserved hypothetical protein; structural genomic | 97.52 | |
| 3uk7_A | 396 | Class I glutamine amidotransferase-like domain-CO | 97.41 | |
| 3n7t_A | 247 | Macrophage binding protein; seattle structural gen | 97.34 | |
| 3uk7_A | 396 | Class I glutamine amidotransferase-like domain-CO | 97.31 | |
| 2iuf_A | 688 | Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen | 97.29 | |
| 3kkl_A | 244 | Probable chaperone protein HSP33; peptidase, heat | 97.29 | |
| 3efe_A | 212 | THIJ/PFPI family protein; structural GEN csgid, ce | 97.25 | |
| 1rw7_A | 243 | YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe | 97.18 | |
| 3fse_A | 365 | Two-domain protein containing DJ-1/THIJ/PFPI-like | 97.15 | |
| 3ot1_A | 208 | 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate | 97.12 | |
| 3ttv_A | 753 | Catalase HPII; heme orientation, oxidoreductase; H | 97.08 | |
| 3gra_A | 202 | Transcriptional regulator, ARAC family; transcript | 97.03 | |
| 1n57_A | 291 | Chaperone HSP31, protein YEDU; alpha-beta sandwich | 96.7 | |
| 3er6_A | 209 | Putative transcriptional regulator protein; struct | 96.64 | |
| 1sy7_A | 715 | Catalase 1; heme oxidation, singlet oxygen, oxidor | 96.58 | |
| 3noq_A | 231 | THIJ/PFPI family protein; DJ-1 superfamily, isocya | 96.42 | |
| 3ewn_A | 253 | THIJ/PFPI family protein; monomer, PSI nysgrc, str | 95.91 | |
| 4gdh_A | 194 | DJ-1, uncharacterized protein C22E12.03C; unknown | 95.77 | |
| 3mgk_A | 211 | Intracellular protease/amidase related enzyme (THI | 95.64 | |
| 3bhn_A | 236 | THIJ/PFPI domain protein; structural genomics, joi | 95.62 | |
| 3en0_A | 291 | Cyanophycinase; serine protease, beta peptide spec | 94.97 | |
| 1t0b_A | 252 | THUA-like protein; trehalose metabolism, NCS symme | 93.67 | |
| 1z0s_A | 278 | Probable inorganic polyphosphate/ATP-NAD kinase; A | 92.76 | |
| 2an1_A | 292 | Putative kinase; structural genomics, PSI, protein | 89.97 | |
| 4e5v_A | 281 | Putative THUA-like protein; THUA-like proteins, tr | 89.51 | |
| 2i2c_A | 272 | Probable inorganic polyphosphate/ATP-NAD kinase 1; | 87.83 | |
| 3kbq_A | 172 | Protein TA0487; structural genomics, CINA, protein | 87.07 | |
| 2fz5_A | 137 | Flavodoxin; alpha/beta doubly-wound topology, non- | 87.07 | |
| 1u0t_A | 307 | Inorganic polyphosphate/ATP-NAD kinase; alpha-beta | 86.98 | |
| 2r47_A | 157 | Uncharacterized protein MTH_862; unknown function, | 86.34 | |
| 5nul_A | 138 | Flavodoxin; electron transport, flavoprotein, FMN; | 82.7 | |
| 3pfn_A | 365 | NAD kinase; structural genomics consortium, SNP, S | 82.45 | |
| 3iwt_A | 178 | 178AA long hypothetical molybdenum cofactor biosy | 80.12 |
| >1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=240.64 Aligned_cols=174 Identities=42% Similarity=0.690 Sum_probs=145.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc--hh-HHHHHHhCCCCCEEeeeHhHHHHHHHhC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--IS-LQTVLELGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~--~~-~~~~~~~~~~~PilGIC~G~Q~l~~~~g 78 (192)
++.++|+++|+++++++.++.+.+++...++||||++||++++.+.. .+ .+.+++++.++|+||||+|||+|+.++|
T Consensus 16 ~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~~~~~PvLGIC~G~QlL~~~~g 95 (195)
T 1qdl_B 16 NIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFG 95 (195)
T ss_dssp HHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEEETHHHHHHHHHTT
T ss_pred HHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhhhhhHHHHHHHHhcCCCcEEEEehHHHHHHHHhC
Confidence 47899999999999999865556677655799999999999987742 23 3555556789999999999999999999
Q ss_pred CeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceE
Q 029484 79 GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQ 157 (192)
Q Consensus 79 g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~ 157 (192)
|++.+... ..+|.+..+....+..+++++++++.+.++++|++.+.. ++++++++|++ +++.++|+++++++ ++
T Consensus 96 g~v~~~~~-~~~g~~~~v~~~~~~~~~l~~~~~~~~~v~~~H~~~v~~---l~~~~~vla~s~~~g~i~a~~~~~~~-~~ 170 (195)
T 1qdl_B 96 AKIRRARK-VFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVDE---VHRPLIVDAISAEDNEIMAIHHEEYP-IY 170 (195)
T ss_dssp CEEEEEEE-EEEEEEEEEEECCSSCCSTTTTCCSEEEEEEEEEEEEEC---CCTTEEEEEEESSSCCEEEEEESSSS-EE
T ss_pred CEEeccCC-CcCCCceEEEECCCCHhHHHhcCCCceEEeccccchhhh---CCCCcEEEEEECCCCcEEEEEeCCCC-EE
Confidence 99998763 457777766654322227999998889999999999975 56889999999 89999999999876 99
Q ss_pred EEeccCCCCCCCchHHHHHHHHH
Q 029484 158 GVQFHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 158 g~QfHPE~~~~~~~~~l~~~f~~ 180 (192)
|+|||||++.++.+.+||++|++
T Consensus 171 gvQfHPE~~~~~~g~~l~~~f~~ 193 (195)
T 1qdl_B 171 GVQFHPESVGTSLGYKILYNFLN 193 (195)
T ss_dssp EESSBTTSTTCTTHHHHHHHHHH
T ss_pred EEecCCCCCCCccHHHHHHHHHh
Confidence 99999999877899999999997
|
| >1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=229.11 Aligned_cols=172 Identities=32% Similarity=0.619 Sum_probs=133.3
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhc----cCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHh
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKR----KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~----~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~ 77 (192)
+++++++++|+++++++++ .+.+++.. .+.+++|++|||+++.+.+.....++.+++++||||||+|||+|+.++
T Consensus 15 ~i~~~l~~~G~~~~v~~~~-~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~~~~~PilGIC~G~Qll~~~~ 93 (192)
T 1i1q_B 15 NLADQLRTNGHNVVIYRNH-IPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAY 93 (192)
T ss_dssp HHHHHHHHTTCEEEEEETT-SCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCEEEETHHHHHHHHHT
T ss_pred HHHHHHHHCCCeEEEEECC-CCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHHhcCCCEEEECcChHHHHHHh
Confidence 5799999999999999975 44455422 145679999999998876655455555678999999999999999999
Q ss_pred CCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceE
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQ 157 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~ 157 (192)
||++.+.. ...+|....+.. .++++|+++++.+.++++|++.+.. ++++++++|.+ ++.++++++.+++ ++
T Consensus 94 Gg~v~~~~-~~~~g~~~~~~~---~~~~l~~~~~~~~~v~~~H~~~v~~---lp~~~~v~a~~-~~~~~ai~~~~~~-~~ 164 (192)
T 1i1q_B 94 GGYVGQAG-EILHGKATSIEH---DGQAMFAGLANPLPVARYHSLVGSN---VPAGLTINAHF-NGMVMAVRHDADR-VC 164 (192)
T ss_dssp SCCCCC----CCSSEEEEEEE---CCCGGGTTSCSSEEEEECCC---CC---CCTTCEEEEEE-TTEEEEEEETTTT-EE
T ss_pred CCEEEeCC-CcEecceeEEec---CCChHHhcCCCCcEEEechhhHhhh---CCCccEEEECC-CCcEEEEEECCCC-EE
Confidence 99998764 233454433322 3567999998899999999999865 55789999854 5789999988776 99
Q ss_pred EEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 158 GVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 158 g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
|+|||||++.++.|.++++||++.+.
T Consensus 165 gvQfHPE~~~~~~g~~il~nf~~~~~ 190 (192)
T 1i1q_B 165 GFQFHPESILTTQGARLLEQTLAWAQ 190 (192)
T ss_dssp EESSBTTSTTCTTHHHHHHHHHHHHT
T ss_pred EEEccCcccCCcccHHHHHHHHHHHh
Confidence 99999999988899999999998764
|
| >1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=224.01 Aligned_cols=171 Identities=28% Similarity=0.471 Sum_probs=138.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
++.++++++|+++++++.+. +.+++...++||||++||+ ++.+.....+.+++. +.++|+||||+|+|+|+.++||+
T Consensus 15 ~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~dglil~Gg~-~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~~~gg~ 92 (189)
T 1wl8_A 15 RIWRTLRYLGVETKIIPNTT-PLEEIKAMNPKGIIFSGGP-SLENTGNCEKVLEHYDEFNVPILGICLGHQLIAKFFGGK 92 (189)
T ss_dssp HHHHHHHHTTCEEEEEETTC-CHHHHHHTCCSEEEECCCS-CTTCCTTHHHHHHTGGGTCSCEEEETHHHHHHHHHHTCE
T ss_pred HHHHHHHHCCCeEEEEECCC-ChHHhcccCCCEEEECCCC-ChhhhhhHHHHHHHHhhCCCeEEEEcHHHHHHHHHhCCc
Confidence 57899999999999999753 5566654579999999998 776655445666654 78899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+.... .+| +..+... .++++|+.+++.+.++++|++.+.. ++++++++|+++++.+++++++++| ++|+|
T Consensus 93 v~~~~~~-~~G-~~~~~~~--~~~~l~~~~~~~~~~~~~h~~~v~~---l~~~~~vla~s~~g~i~a~~~~~~~-~~gvQ 164 (189)
T 1wl8_A 93 VGRGEKA-EYS-LVEIEII--DEXEIFKGLPKRLKVWESHMDEVKE---LPPKFKILARSETCPIEAMKHEELP-IYGVQ 164 (189)
T ss_dssp EEECSCC-SCE-EEEEEES--CC--CCTTSCSEEEEEECCSEEEEE---CCTTEEEEEEESSCSCSEEEESSSC-EEEES
T ss_pred eecCCCc-ccC-ceeEEEe--cCchHHhCCCCceEEEEEeeeehhh---CCCCcEEEEEcCCCCEEEEEeCCce-EEEEe
Confidence 9986532 344 3334333 3667888888888888999988765 5578999999999999999998866 99999
Q ss_pred ccCCCCCCCchHHHHHHHHHHH
Q 029484 161 FHPESIITTEGKTIVRNFIKMI 182 (192)
Q Consensus 161 fHPE~~~~~~~~~l~~~f~~~~ 182 (192)
||||++.++++.++|++|++.+
T Consensus 165 fHPE~~~~~~g~~l~~~f~~~~ 186 (189)
T 1wl8_A 165 FHPEVAHTEKGEEILRNFAKLC 186 (189)
T ss_dssp SCTTSTTSTTHHHHHHHHHHHH
T ss_pred cCCCcCCCcchHHHHHHHHHHH
Confidence 9999987778999999999865
|
| >2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=231.08 Aligned_cols=173 Identities=25% Similarity=0.351 Sum_probs=140.9
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCC-CCCCCCc--chh-HHHHHHhCCCCCEEeeeHhHHHHHHHh
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG-PGAPQDS--GIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG-~~~~~~~--~~~-~~~~~~~~~~~PilGIC~G~Q~l~~~~ 77 (192)
+++++++++|+++++++++ .+.+++. ++|||||+|| ++++++. ..+ .+.+ +++++|+||||+|||+|+.++
T Consensus 28 ~~~~~l~~~G~~~~vv~~~-~~~~~l~--~~DglIl~GG~p~~~~~~~~~~~l~~~~--~~~~~PiLGIC~G~Qll~~~l 102 (212)
T 2a9v_A 28 REWRVLRELGVDTKIVPND-IDSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYI--DDHNYPILGICVGAQFIALHF 102 (212)
T ss_dssp HHHHHHHHTTCBCCEEETT-SCGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHH--HHCCSCEEEETHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEEEEeCC-CCHHHHh--CCCEEEECCCCCCCCcccccchhHHHHH--HhCCCCEEEEChHHHHHHHHh
Confidence 6889999999999999975 3455555 6999999999 8988775 222 2223 357899999999999999999
Q ss_pred CCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceE
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQ 157 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~ 157 (192)
||++.+... . ..++..+... .+++++++++..+.++++|++.+.. ++++++++|+++++.++|++.++++ ++
T Consensus 103 Gg~v~~~~~-~-~~G~~~v~~~--~~~~l~~~~~~~~~v~~~H~~~v~~---l~~~~~vlA~s~d~~i~ai~~~~~~-i~ 174 (212)
T 2a9v_A 103 GASVVKAKH-P-EFGKTKVSVM--HSENIFGGLPSEITVWENHNDEIIN---LPDDFTLAASSATCQVQGFYHKTRP-IY 174 (212)
T ss_dssp TCEEEEEEE-E-EEEEEEEEES--CCCGGGTTCCSEEEEEEEEEEEEES---CCTTEEEEEECSSCSCSEEEESSSS-EE
T ss_pred CCEEEcCCC-c-ccCceeeEEC--CCChhHhcCCCceEEEeEhhhhHhh---CCCCcEEEEEeCCCCEEEEEECCCC-EE
Confidence 999998752 2 3345555554 2567999888888999999999975 5688999999999999999998765 99
Q ss_pred EEeccCCCCCCCchHHHHHHHHHHHHHHhh
Q 029484 158 GVQFHPESIITTEGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 158 g~QfHPE~~~~~~~~~l~~~f~~~~~~~~~ 187 (192)
|+|||||++.++.+.+||++|++.+.+.+.
T Consensus 175 gvQfHPE~~~~~~g~~l~~~F~~~~~~~~~ 204 (212)
T 2a9v_A 175 ATQFHPEVEHTQYGRDIFRNFIGICASYRE 204 (212)
T ss_dssp EESSCTTSTTSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHhhh
Confidence 999999998777899999999998765543
|
| >2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-35 Score=225.82 Aligned_cols=169 Identities=24% Similarity=0.397 Sum_probs=130.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc--hhHHHHHHhCCCCCEEeeeHhHHHHHHHhCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLELGPTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~--~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg 79 (192)
+++++++++|+++++++++ .+.+++...++|||||+||++++++.. .+.+.+ ++.++|+||||+|||+|+.++||
T Consensus 39 ~i~~~l~~~G~~~~vv~~~-~~~~~l~~~~~dglil~Gg~~~~~~~~~~~~~~~~--~~~~~PilGIC~G~Qll~~~~GG 115 (218)
T 2vpi_A 39 VIDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAI--FTIGKPVLGICYGMQMMNKVFGG 115 (218)
T ss_dssp HHHHHHHHTTCCEEEECTT-CCHHHHHHHTCSEEEEEC---------CCCCCGGG--GTSSCCEEEETHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCEEEEEECC-CChHHHhhcCCCEEEECCCCcccccccchhHHHHH--HHcCCCEEEEcHHHHHHHHHhCC
Confidence 5789999999999999975 456666655799999999998876432 122222 46789999999999999999999
Q ss_pred eeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEE
Q 029484 80 KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~ 159 (192)
++.+... . +.++..+... ..++|+++++..+.++++|++.+.. ++++++++|++ ++.++++++++++ ++|+
T Consensus 116 ~v~~~~~-~-~~G~~~v~~~--~~~~l~~~l~~~~~v~~~H~~~v~~---l~~~~~vlA~s-~~~i~ai~~~~~~-i~gv 186 (218)
T 2vpi_A 116 TVHKKSV-R-EDGVFNISVD--NTCSLFRGLQKEEVVLLTHGDSVDK---VADGFKVVARS-GNIVAGIANESKK-LYGA 186 (218)
T ss_dssp CEEEEEE-C-SCEEEEEEEC--TTSGGGTTCCSEEEEEECSEEEESS---CCTTCEEEEEE-TTEEEEEEETTTT-EEEE
T ss_pred ceEeCCC-C-cccEEEEEEc--cCChhHhcCCCCcEEeehhhhHhhh---cCCCCEEEEEc-CCeEEEEEECCCC-EEEE
Confidence 9998763 2 3345556554 3578999998888999999999975 55789999999 6799999988766 9999
Q ss_pred eccCCCCCCCchHHHHHHHH-HHH
Q 029484 160 QFHPESIITTEGKTIVRNFI-KMI 182 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~-~~~ 182 (192)
|||||++.++.+.+||++|+ +.+
T Consensus 187 QfHPE~~~~~~g~~l~~~F~~~~~ 210 (218)
T 2vpi_A 187 QFHPEVGLTENGKVILKNFLYDIA 210 (218)
T ss_dssp SSCTTSTTSTTHHHHHHHHHTTTT
T ss_pred EcCCCCCCChhHHHHHHHHHHHHh
Confidence 99999987788999999999 554
|
| >1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=236.85 Aligned_cols=172 Identities=23% Similarity=0.457 Sum_probs=137.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
|++++|+++|+++++++++ .+.+++...++|||||+|||+++.+....++.+++ +++++||||||+|||+|+.++||+
T Consensus 203 ni~r~L~~~G~~v~vvp~~-~~~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~~~~~~~PILGIClG~QLLa~A~GG~ 281 (379)
T 1a9x_B 203 NILRMLVDRGCRLTIVPAQ-TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAK 281 (379)
T ss_dssp HHHHHHHHTTEEEEEEETT-CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEEETHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCEEEEEecc-CCHHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCCEEEECchHHHHHHHhCcE
Confidence 6899999999999999975 56677776689999999999999876555666665 567899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceEEE
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~g~ 159 (192)
+.+++.+. ++.+.++.... . ...+.+.++|++.|..++++ +++++++.+ +|+.++|++++++| ++|+
T Consensus 282 v~k~~~gh-~g~n~pv~~~~--~-------g~v~its~~H~~aV~~~~Lp-~~~~v~a~s~~Dg~ieai~~~~~p-i~gV 349 (379)
T 1a9x_B 282 TVKMKFGH-HGGNHPVKDVE--K-------NVVMITAQNHGFAVDEATLP-ANLRVTHKSLFDGTLQGIHRTDKP-AFSF 349 (379)
T ss_dssp EEEEEEEE-EEEEEEEEETT--T-------TEEEEEEEEEEEEECSTTCC-TTEEEEEEETTTCCEEEEEESSSS-EEEE
T ss_pred EEeccccc-ccCceeeEecC--C-------CcEEEEecCccceEecccCC-CCeEEEEEeCCCCcEEEEEECCCC-EEEE
Confidence 99986432 44444433110 0 12234567899999765554 679999998 78999999998876 9999
Q ss_pred eccCCCCCCC-chHHHHHHHHHHHHHHh
Q 029484 160 QFHPESIITT-EGKTIVRNFIKMIVRKE 186 (192)
Q Consensus 160 QfHPE~~~~~-~~~~l~~~f~~~~~~~~ 186 (192)
|||||.+.++ ++.+||++|++++.+.+
T Consensus 350 QFHPE~~~~p~d~~~Lf~~Fl~~~~~~~ 377 (379)
T 1a9x_B 350 QGNPEASPGPHDAAPLFDHFIELIEQYR 377 (379)
T ss_dssp SSCTTCSSSCSTTTHHHHHHHHHHHHHH
T ss_pred EeCCcCCCCcccHHHHHHHHHHHHHHhh
Confidence 9999999887 68999999999987643
|
| >3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=253.59 Aligned_cols=174 Identities=24% Similarity=0.405 Sum_probs=133.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCee
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 81 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v 81 (192)
+++++++++|+.+++++++ .+.+++...++|||||+|||+++++.+........++.++||||||+|||+|+.++||++
T Consensus 25 ~i~r~lr~~Gv~~~i~p~~-~~~~~i~~~~~dgIILsGGp~sv~~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~lGG~V 103 (527)
T 3tqi_A 25 LIARRVREIGVYCELMPCD-IDEETIRDFNPHGIILSGGPETVTLSHTLRAPAFIFEIGCPVLGICYGMQTMAYQLGGKV 103 (527)
T ss_dssp HHHHHHHHHTCEEEEEETT-CCSSSSTTTCCSEEEECCCCC---------CCCSTTTSSSCEEEETHHHHHHHHHSSSCB
T ss_pred HHHHHHHHCCCeEEEEECC-CCHHHHHhcCCCEEEECCcCcccccCCChhhHHHHHhcCCCEEEEChHHHHHHHHcCCeE
Confidence 5889999999999999974 556667666789999999999987765321111125679999999999999999999999
Q ss_pred eecCCccccccceeeEEcccCCCccccCCCC--------cccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCC
Q 029484 82 VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN--------PFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKY 153 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~ 153 (192)
.+... .++| +..+.... .+++|++++. .+.++++|+|.|.. ++++++++|++++++++|+++.++
T Consensus 104 ~~~~~-~e~G-~~~v~~~~--~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~~---lp~g~~v~A~s~~~~i~ai~~~~~ 176 (527)
T 3tqi_A 104 NRTAK-AEFG-HAQLRVLN--PAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSE---LPPGFEATACTDNSPLAAMADFKR 176 (527)
T ss_dssp C------CEE-EEEEEESS--CTTTTSSCCSBCCTTSCCEEEEEEESSSCBCS---CCTTCEEEEEETTEEEEEEECSSS
T ss_pred EeCCC-cccc-ceEEEEcC--CChhhcCCccccccccccceEEEEEcccchhc---cCCCCEEEEEeCCCcEEEEEcCCC
Confidence 98863 3344 44454432 4679999886 58899999999976 568999999999999999999877
Q ss_pred CceEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 029484 154 KHLQGVQFHPESIITTEGKTIVRNFIKMIVR 184 (192)
Q Consensus 154 ~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~ 184 (192)
+ +||+|||||++.++.|.+||+||+..+++
T Consensus 177 ~-~~GvQFHPE~~~t~~G~~ll~nF~~~i~~ 206 (527)
T 3tqi_A 177 R-FFGLQFHPEVTHTPQGHRILAHFVIHICQ 206 (527)
T ss_dssp C-EEEESBCSSSTTSTTHHHHHHHHHHTTSC
T ss_pred C-EEEEEeccccccccccchhhhhhhhhccc
Confidence 6 99999999999888999999999965543
|
| >1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=248.89 Aligned_cols=171 Identities=25% Similarity=0.416 Sum_probs=141.3
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch--hHHHHHHhCCCCCEEeeeHhHHHHHHHhCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~--~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg 79 (192)
+++++++++|+.+++++++ .+.+++...++|||||+|||+++++... ..+. .++.++||||||+|||+|+.++||
T Consensus 22 ~i~r~lr~~G~~~~i~p~~-~~~~~i~~~~~dgiILsGGp~s~~~~~~~~~~~~--~~~~g~PvLGIC~G~Qlla~~~GG 98 (525)
T 1gpm_A 22 LVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSPRAPQY--VFEAGVPVFGVCYGMQTMAMQLGG 98 (525)
T ss_dssp HHHHHHHHTTCEEEEEESC-CCHHHHHHHCCSEEEECCCSSCTTSTTCCCCCGG--GGTSSSCEEEETHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCEEEEEECC-CCHHHHhccCCCEEEECCcCccccccCCcchHHH--HHHCCCCEEEEChHHHHHHHHcCC
Confidence 4789999999999999974 5677787668899999999999877542 1112 246789999999999999999999
Q ss_pred eeeecCCccccccceeeEEcccCCCccccCCCC--------cccccccccccccccCCCCCCeEEEEEcCCCceEEEeeC
Q 029484 80 KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN--------PFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHK 151 (192)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~ 151 (192)
++.+.. ..++| +..+... .+++||++++. .+.++++|++.|.. ++++++++|+++++.++|+++.
T Consensus 99 ~V~~~~-~~e~G-~~~v~~~--~~~~L~~~l~~~~~~~~~~~~~v~~~H~~~V~~---lp~g~~v~A~s~~~~i~ai~~~ 171 (525)
T 1gpm_A 99 HVEASN-EREFG-YAQVEVV--NDSALVRGIEDALTADGKPLLDVWMSHGDKVTA---IPSDFITVASTESCPFAIMANE 171 (525)
T ss_dssp EEECCS-SCEEE-EEEEEEC--SCCTTTTTCCSEECTTSCEEEEEEEEECSEEEE---CCTTCEEEEECSSCSCSEEEET
T ss_pred EEEeCC-Ccccc-eEEEEeC--CCCHhhccCccccccccccceEEEEEccceeee---CCCCCEEEEECCCCCEEEEEEC
Confidence 999886 33444 3444443 25679999887 78899999999976 5689999999999999999998
Q ss_pred CCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 152 KYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 152 ~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
+++ +||+|||||++.++.|.+||++|+..++
T Consensus 172 ~~~-i~gvQFHPE~~~~~~g~~ll~nF~~~i~ 202 (525)
T 1gpm_A 172 EKR-FYGVQFHPEVTHTRQGMRMLERFVRDIC 202 (525)
T ss_dssp TTT-EEEESBCTTSTTSTTHHHHHHHHHHTTS
T ss_pred CCC-EEEEecCCCCCcchhHHHHHHHHHHhhh
Confidence 766 9999999999988899999999996443
|
| >2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=245.79 Aligned_cols=169 Identities=26% Similarity=0.435 Sum_probs=139.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch--hHHHHHHhCCCCCEEeeeHhHHHHHHHhCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGG 79 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~--~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg 79 (192)
+++++++++|+.+++++++ .+.+++...++|||||+|||+++++... ..+. .++.++||||||+|||+|+.++||
T Consensus 14 ~i~r~l~~~G~~~~i~p~~-~~~~~i~~~~~dgiIlsGGp~s~~~~~~~~~~~~--~~~~~~PvLGIC~G~Qlla~~~GG 90 (503)
T 2ywb_A 14 LIARRLRELRAFSLILPGD-APLEEVLKHRPQALILSGGPRSVFDPDAPRPDPR--LFSSGLPLLGICYGMQLLAQELGG 90 (503)
T ss_dssp HHHHHHHTTTCCEEEEETT-CCHHHHHTTCCSEEEECCCSSCSSCTTCCCCCGG--GGCSSCCEEEETHHHHHHHHTTTC
T ss_pred HHHHHHHHCCCEEEEEECC-CCHHHHHhcCCCEEEECCCCchhccCCCcchHHH--HHhCCCCEEEECHHHHHHHHHhCC
Confidence 5889999999999999975 5678887667899999999999877542 1111 246789999999999999999999
Q ss_pred eeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEE
Q 029484 80 KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~ 159 (192)
++.+... .++| +..+.... +++|++++..+.++++|++.|.. ++++++++|+++++.++|+++++++ +||+
T Consensus 91 ~v~~~~~-~e~G-~~~v~~~~---~~l~~~~~~~~~v~~~H~~~v~~---lp~g~~v~A~s~~~~i~ai~~~~~~-~~gv 161 (503)
T 2ywb_A 91 RVERAGR-AEYG-KALLTRHE---GPLFRGLEGEVQVWMSHQDAVTA---PPPGWRVVAETEENPVAAIASPDGR-AYGV 161 (503)
T ss_dssp EEECC----CEE-EEECSEEC---SGGGTTCCSCCEEEEECSCEEEE---CCTTCEEEEECSSCSCSEEECTTSS-EEEE
T ss_pred eEeeCCC-Cccc-eEEEEecC---cHHhhcCCCccEEEEECCCcccc---CCCCCEEEEEECCCCEEEEEeCCCC-EEEE
Confidence 9998762 3344 33343332 67999998889999999999976 5689999999999999999998766 9999
Q ss_pred eccCCCCCCCchHHHHHHHHHHH
Q 029484 160 QFHPESIITTEGKTIVRNFIKMI 182 (192)
Q Consensus 160 QfHPE~~~~~~~~~l~~~f~~~~ 182 (192)
|||||++.++.|.+||++|++.+
T Consensus 162 QFHPE~~~~~~g~~ll~~F~~~~ 184 (503)
T 2ywb_A 162 QFHPEVAHTPKGMQILENFLELA 184 (503)
T ss_dssp SBCTTSTTSTTHHHHHHHHHHHT
T ss_pred ecCCCcccccccHHHHHHHHHHh
Confidence 99999998889999999999543
|
| >3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=249.98 Aligned_cols=175 Identities=25% Similarity=0.404 Sum_probs=141.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch--hHHHHHH--hCCCCCEEeeeHhHHHHHHHh
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLE--LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~--~~~~~~~--~~~~~PilGIC~G~Q~l~~~~ 77 (192)
+++++++++|+.+++++++ .+.+++...++|||||+|||+++++.+. ..+.+.+ .++++|+||||+|||+|+.++
T Consensus 22 ~I~r~lre~Gv~~eiv~~~-~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~PvLGIC~G~QlLa~~l 100 (556)
T 3uow_A 22 LIVKRLNNIKIFSETKDYG-VELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQM 100 (556)
T ss_dssp HHHHHHHHTTCCEEEEETT-CCGGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCEEEETHHHHHHHHHT
T ss_pred HHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHHhhhcCCCEEEECHHHHHHHHHh
Confidence 6899999999999999974 6677776668999999999999977542 2233332 356899999999999999999
Q ss_pred CCeeeecCCccccccceeeEEccc-----------------------------CCCccccCC-CCccccccccccccccc
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYDEK-----------------------------GEDGLLAGL-SNPFTAGRYHSLVIEKE 127 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~l~~~~-~~~~~~~~~H~~~v~~~ 127 (192)
||++.+.. ..++|... +..... ..+++|+++ ++.+.++++|++.+..
T Consensus 101 GG~V~~~~-~~E~G~~~-l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf~gl~~~~~~v~~~H~d~V~~- 177 (556)
T 3uow_A 101 NGEVKKSK-TSEYGCTD-VNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDITTVWMNHNDEVTK- 177 (556)
T ss_dssp TCEEEEEE-EEEEEEEE-EEECCTTGGGGCSGGGGC---CCHHHHHTTSCCCC--CGGGTTCCSSEEEEEEEEEEEEEE-
T ss_pred CCcEecCC-CcccCCcc-eeeccCcccccccceecccccccccccccccccccccchhhcccccCceEEEEEccceeec-
Confidence 99999876 33455332 333221 134799999 8889999999999976
Q ss_pred CCCCCCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 128 SFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 128 ~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
++++++++|+++++.++|+++++++ +||+|||||++.++.|.+||+||+..++
T Consensus 178 --lp~g~~vlA~s~~~~i~ai~~~~~~-i~GvQFHPE~~~~~~G~~ll~nFl~~i~ 230 (556)
T 3uow_A 178 --IPENFYLVSSSENCLICSIYNKEYN-IYGVQYHPEVYESLDGELMFYNFAYNIC 230 (556)
T ss_dssp --CCTTCEEEEEETTEEEEEEEETTTT-EEEESSCTTSTTSTTHHHHHHHHHTTTT
T ss_pred --cCCCcEEEEEeCCCCEEEEEECCCC-EEEEEcCCCCCccccchHHHHHHHHHhh
Confidence 5689999999999999999998776 9999999999988899999999995544
|
| >3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=221.75 Aligned_cols=178 Identities=21% Similarity=0.299 Sum_probs=134.2
Q ss_pred cHHHHHHhCCCeEEEEeCCCCC-HHHHhccCCCeEEECCCCC-CC--CCc--c-------h-----hHHHHHH-hCCCCC
Q 029484 2 TFLKYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISPGPG-AP--QDS--G-------I-----SLQTVLE-LGPTVP 62 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~-~~~~~~~~~dglii~GG~~-~~--~~~--~-------~-----~~~~~~~-~~~~~P 62 (192)
+++++++++|..+.++++.... ..++. .++|||||+||++ +| +.. . . .++.++. +++++|
T Consensus 32 ~~~~~l~~aG~~pv~lp~~~~~~~~~~l-~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~P 110 (254)
T 3fij_A 32 RYVDAIQKVGGFPIALPIDDPSTAVQAI-SLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKP 110 (254)
T ss_dssp HHHHHHHHHTCEEEEECCCCGGGHHHHH-HTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCEEEEEeCCCchHHHHHH-hhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCC
Confidence 3678899999999999874321 12211 2899999999986 22 111 0 0 1233333 568999
Q ss_pred EEeeeHhHHHHHHHhCCeeeecCC-------c-----cccccceeeEEcccCCCccccCCCCcccccccccccccccCCC
Q 029484 63 LFGVCMGLQCIGEAFGGKIVRSPL-------G-----VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFP 130 (192)
Q Consensus 63 ilGIC~G~Q~l~~~~gg~v~~~~~-------~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~ 130 (192)
|||||+|||+|+.++||++.+... . ....++..+.... .+.+++.++..+.++++|++.|.. +
T Consensus 111 iLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~~v~~~~--~s~l~~~~~~~~~v~~~H~~~v~~---l 185 (254)
T 3fij_A 111 IFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEP--TSELAKHHPNKKLVNSLHHQFIKK---L 185 (254)
T ss_dssp EEEETHHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCEEEEECT--TSSGGGTCCTTEEECCBCSCEESS---C
T ss_pred EEEECHHHHHHHHHhCCceecccccccCccccccCCCCCccceEEEEeCC--CChHHHhcCCcEEEEEeccchhhc---c
Confidence 999999999999999999987521 0 1123455555542 567888888888899999999975 5
Q ss_pred CCCeEEEEEcCCCceEEEeeC-CCCceEEEeccCCCCCC--CchHHHHHHHHHHHHHH
Q 029484 131 SDALEVTAWTEDGLIMAARHK-KYKHLQGVQFHPESIIT--TEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 131 ~~~~~~~a~s~~~~i~ai~~~-~~~~~~g~QfHPE~~~~--~~~~~l~~~f~~~~~~~ 185 (192)
+++++++|+++|+.++|++.+ ++|+++|+|||||++.+ +.+.+||++|++++.+.
T Consensus 186 ~~g~~v~a~s~dg~ieai~~~~~~~~~~gvQfHPE~~~~~~~~~~~lf~~Fv~~~~~~ 243 (254)
T 3fij_A 186 APSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKT 243 (254)
T ss_dssp CSSEEEEEEETTCCEEEEEESSCSSCEEEESSCGGGTGGGCHHHHHHHHHHHHHHHSC
T ss_pred CCCcEEEEEeCCCcEEEEEecCCCCeEEEEEcCCccCCCCCchHHHHHHHHHHHHHHH
Confidence 689999999999999999999 88779999999999865 46799999999887743
|
| >1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-31 Score=209.90 Aligned_cols=166 Identities=16% Similarity=0.189 Sum_probs=129.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCC--HHHHhccCCCeEEECCCCCCCCCcc--hh----HHHHHH-hCCCCCEEeeeHhHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSG--IS----LQTVLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~--~~~~~~~~~dglii~GG~~~~~~~~--~~----~~~~~~-~~~~~PilGIC~G~Q~ 72 (192)
++.++++..|+++.++++++.+ .+++. ++|||||+||++++++.. ++ .+.+++ +++++|+||||+|||+
T Consensus 28 ~i~~~l~~~G~~v~v~~~~~~~~~~~~l~--~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~Ql 105 (239)
T 1o1y_A 28 MMEDIFREKNWSFDYLDTPKGEKLERPLE--EYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQM 105 (239)
T ss_dssp HHHHHHHHTTCEEEEECGGGTCCCSSCGG--GCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHH
T ss_pred HHHHHHHhCCCcEEEeCCcCccccccchh--cCCEEEECCCCccccCCccChhHHHHHHHHHHHHHCCCCEEEEchhHHH
Confidence 5789999999999988764211 11222 799999999998887642 33 233443 4678999999999999
Q ss_pred HHHHhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCC
Q 029484 73 IGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKK 152 (192)
Q Consensus 73 l~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~ 152 (192)
|+.++||++.+...+. ..++..+... ..+++++.++..+.++++|++.+. ++++++++|+++++.+++++.+
T Consensus 106 L~~alGG~v~~~~~g~-~~G~~~v~~~--~~~~l~~~~~~~~~~~~~H~~~v~----lp~~~~vlA~s~~~~iea~~~~- 177 (239)
T 1o1y_A 106 LAKVLGASVYRGKNGE-EIGWYFVEKV--SDNKFFREFPDRLRVFQWHGDTFD----LPRRATRVFTSEKYENQGFVYG- 177 (239)
T ss_dssp HHHHTTCCEEECTTCC-EEEEEEEEEC--CCCGGGTTSCSEEEEEEEESEEEC----CCTTCEEEEECSSCSCSEEEET-
T ss_pred HHHHcCCeEecCCCCC-ccccEEEEEC--CCCchHHhCCCCceeEeecCCccc----cCCCCEEEEEcCCCCEEEEEEC-
Confidence 9999999999987433 3345655532 367899989888999999999984 4578999999999999999987
Q ss_pred CCceEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 029484 153 YKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 184 (192)
Q Consensus 153 ~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~ 184 (192)
+ ++|+|||||++ ..++++|++....
T Consensus 178 -~-i~gvQfHPE~~-----~~~~~~~~~~~~~ 202 (239)
T 1o1y_A 178 -K-AVGLQFHIEVG-----ARTMKRWIEAYKD 202 (239)
T ss_dssp -T-EEEESSBSSCC-----HHHHHHHHHHTHH
T ss_pred -C-EEEEEeCccCC-----HHHHHHHHHHhHH
Confidence 3 99999999995 4689999876554
|
| >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-32 Score=238.80 Aligned_cols=166 Identities=25% Similarity=0.411 Sum_probs=129.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch--hHHHHHHhCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~--~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
+++.++++|+.+++++++ .+.+++...++|||||+|||+++++... +.+.+ ++.++||||||+|||+|+.++||+
T Consensus 45 iar~lre~Gv~~~ivp~~-~~~e~i~~~~~dGIILsGGp~s~~~~~~~~~~~~i--~~~g~PvLGIC~G~QlLa~~lGG~ 121 (697)
T 2vxo_A 45 IDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAI--FTIGKPVLGICYGMQMMNKVFGGT 121 (697)
T ss_dssp HHHHHHHTTCCEEEEETT-CCHHHHHHHTCSEEEEEECC-------CCCCCGGG--TTSSCCEEEEEHHHHHHHHHTTCC
T ss_pred HHHHHHHCCCEEEEEECC-CCHHHHhhcCCCEEEECCCCCcccCccchhHHHHH--HhCCCCEEEECHHHHHHHHHhCCe
Confidence 678999999999999985 5677776668999999999999875331 22222 467899999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEe
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 160 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~Q 160 (192)
+.+... .++| +..+... ..++||++++..+.++++|++.|.. ++++++++|++++ .++|+++.+++ +||+|
T Consensus 122 v~~~~~-~e~G-~~~v~~~--~~~~Lf~~l~~~~~v~~~H~~~V~~---lp~g~~vlA~s~~-~i~ai~~~~~~-i~GvQ 192 (697)
T 2vxo_A 122 VHKKSV-REDG-VFNISVD--NTCSLFRGLQKEEVVLLTHGDSVDK---VADGFKVVARSGN-IVAGIANESKK-LYGAQ 192 (697)
T ss_dssp BCC---------CEEEEEC--TTSGGGTTCCSEEEECCCSSCCBSS---CCTTCEEEEEETT-EEEEEEETTTT-EEEES
T ss_pred EeecCC-Cccc-eEEEEec--CCChhhhcCCccCcceeecccceec---CCCCeEEEEEeCC-ceEEEEeCCCC-EEEEE
Confidence 998763 3455 4555554 2567999998888999999999975 5689999999965 99999998876 99999
Q ss_pred ccCCCCCCCchHHHHHHHHH
Q 029484 161 FHPESIITTEGKTIVRNFIK 180 (192)
Q Consensus 161 fHPE~~~~~~~~~l~~~f~~ 180 (192)
||||++.++.|.+||++|+.
T Consensus 193 FHPE~~~t~~g~~ll~nFl~ 212 (697)
T 2vxo_A 193 FHPEVGLTENGKVILKNFLY 212 (697)
T ss_dssp SCTTSSSSTTHHHHHHHHHT
T ss_pred ecccCCCCccchhhhhhhhh
Confidence 99999988899999999993
|
| >3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-32 Score=210.94 Aligned_cols=167 Identities=18% Similarity=0.252 Sum_probs=130.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCC--HHHHhccCCCeEEECCCCCCCCC---cchh------HHHHHH-hCCCCCEEeeeHh
Q 029484 2 TFLKYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQD---SGIS------LQTVLE-LGPTVPLFGVCMG 69 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~--~~~~~~~~~dglii~GG~~~~~~---~~~~------~~~~~~-~~~~~PilGIC~G 69 (192)
.+.+++++.|+++.+++.+... .+++. ++|+|||+|||+++.+ ..+| .+.+++ ++.++||||||+|
T Consensus 16 ~~~~~l~~~g~~~~~~~~~~~~~~p~~~~--~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG 93 (236)
T 3l7n_A 16 AYLAWAALRGHDVSMTKVYRYEKLPKDID--DFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLG 93 (236)
T ss_dssp HHHHHHHHTTCEEEEEEGGGTCCCCSCGG--GCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHH
T ss_pred HHHHHHHHCCCeEEEEeeeCCCCCCCCcc--ccCEEEECCCCCCcccccccCcccchHHHHHHHHHHHHcCCCEEEEchH
Confidence 4678999999999999864221 11233 7999999999999743 2223 334444 5689999999999
Q ss_pred HHHHHHHhCCeeeecCCccccccceeeEEcc-cCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEE
Q 029484 70 LQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 148 (192)
Q Consensus 70 ~Q~l~~~~gg~v~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai 148 (192)
||+|+.++||++.+... . ..++.++.... +.++++|.+++..+.++++|++... ++++++++|+++++.++++
T Consensus 94 ~QlL~~~~Gg~v~~~~~-~-~~G~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~~~~~----lp~~~~vla~s~~~~~~a~ 167 (236)
T 3l7n_A 94 AQLMGVAYGADYLHSPK-K-EIGNYLISLTEAGKMDSYLSDFSDDLLVGHWHGDMPG----LPDKAQVLAISQGCPRQII 167 (236)
T ss_dssp HHHHHHHTTCCCEEEEE-E-EEEEEEEEECTTGGGCGGGTTSCSEEEEEEEEEEECC----CCTTCEEEEECSSCSCSEE
T ss_pred HHHHHHHhCCEEecCCC-c-eeeeEEEEEccCcccChHHhcCCCCcEEEEecCCccc----CCChheEEEECCCCCEEEE
Confidence 99999999999998763 2 33455666543 2357899999999999999998743 4578999999999999999
Q ss_pred eeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 149 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 149 ~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
+.++ +++|+|||||++ ..++++|+....
T Consensus 168 ~~~~--~v~gvQfHPE~~-----~~~~~~~~~~~~ 195 (236)
T 3l7n_A 168 KFGP--KQYAFQCHLEFT-----PELVAALIAQED 195 (236)
T ss_dssp EEET--TEEEESSBSSCC-----HHHHHHHHHHCS
T ss_pred EECC--CEEEEEeCCCCC-----HHHHHHHHHhhh
Confidence 9875 499999999996 789999988754
|
| >3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-32 Score=214.69 Aligned_cols=164 Identities=20% Similarity=0.247 Sum_probs=126.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCC--HHHHhccCCCeEEECCCCCCCCCcchhH----HHHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSGISL----QTVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~--~~~~~~~~~dglii~GG~~~~~~~~~~~----~~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
++.+++++.|+++++++++..+ .+++. ++|+|||+||++++++..+++ +.++. ++.++||||||+|+|+|+
T Consensus 19 ~i~~~l~~~G~~v~v~~~~~~~~~p~~~~--~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qll~ 96 (250)
T 3m3p_A 19 HFGDFLAGEHIPFQVLRMDRSDPLPAEIR--DCSGLAMMGGPMSANDDLPWMPTLLALIRDAVAQRVPVIGHCLGGQLLA 96 (250)
T ss_dssp HHHHHHHHTTCCEEEEEGGGTCCCCSCGG--GSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHHHTCCEEEETHHHHHHH
T ss_pred HHHHHHHHCCCeEEEEeccCCCcCcCccc--cCCEEEECCCCCcccccchHHHHHHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 4788999999999999864322 11233 799999999999987655443 23333 467899999999999999
Q ss_pred HHhCCeeeecCCccccccceeeEEccc-CCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCC
Q 029484 75 EAFGGKIVRSPLGVMHGKSSLVYYDEK-GEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKY 153 (192)
Q Consensus 75 ~~~gg~v~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~ 153 (192)
.++||+|.+.+. . ..+|..+..... ..+++| ++++.+.++++|++.+. ++++++++|+++++.++|++.++
T Consensus 97 ~~lGG~V~~~~~-~-e~G~~~v~~~~~~~~~~l~-g~~~~~~v~~~H~~~v~----lp~~~~vlA~s~~~~~~a~~~~~- 168 (250)
T 3m3p_A 97 KAMGGEVTDSPH-A-EIGWVRAWPQHVPQALEWL-GTWDELELFEWHYQTFS----IPPGAVHILRSEHCANQAYVLDD- 168 (250)
T ss_dssp HHTTCCEEEEEE-E-EEEEEEEEECSSHHHHHHH-SCSSCEEEEEEEEEEEC----CCTTEEEEEEETTEEEEEEEETT-
T ss_pred HHhCCEEEeCCC-C-ceeeEEEEEecCCCCcccc-cCCCccEEEEEccceee----cCCCCEEEEEeCCCCEEEEEECC-
Confidence 999999999863 2 344666665432 235688 78889999999999994 56899999999999999999986
Q ss_pred CceEEEeccCCCCCCCchHHHHHHHHHH
Q 029484 154 KHLQGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 154 ~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
+++|+|||||++ ..++.+|+..
T Consensus 169 -~~~GvQfHPE~~-----~~~~~~~l~~ 190 (250)
T 3m3p_A 169 -LHIGFQCHIEMQ-----AHMVREWCSI 190 (250)
T ss_dssp -TEEEESSCTTCC-----HHHHHHHHHH
T ss_pred -eeEEEEeCCcCC-----HHHHHHHHHh
Confidence 499999999996 3445555444
|
| >3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=235.33 Aligned_cols=171 Identities=22% Similarity=0.345 Sum_probs=137.2
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc-hhHH----HHHH-hCCCCCEEeeeHhHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQ----TVLE-LGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~-~~~~----~~~~-~~~~~PilGIC~G~Q~l~~ 75 (192)
||++++++.|+++++++++.. .+ ..++|||||+|||+++.+.+ .++. .++. ++.++||||||+|||+|+.
T Consensus 461 ~l~~~l~~~G~~v~Vv~~d~~--~~--~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~ 536 (645)
T 3r75_A 461 MIAQQLSSLGLATEVCGVHDA--VD--LARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNA 536 (645)
T ss_dssp HHHHHHHHTTCEEEEEETTCC--CC--GGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEECCCc--cc--ccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHH
Confidence 689999999999999998642 12 23799999999999998876 3432 3333 4678999999999999999
Q ss_pred HhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCc
Q 029484 76 AFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKH 155 (192)
Q Consensus 76 ~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~ 155 (192)
++||++.+... ..+|....+... .++++.++++++.++++|...+.. ++++++++|+++++.++++++++
T Consensus 537 alGG~V~~~~~-~~~G~~~~i~~~---~~~l~~~~~~~~~v~~~h~~~~~~---lp~g~~v~A~s~dg~i~Ai~~~~--- 606 (645)
T 3r75_A 537 ILGIPLVRREV-PNQGIQVEIDLF---GQRERVGFYNTYVAQTVRDEMDVD---GVGTVAISRDPRTGEVHALRGPT--- 606 (645)
T ss_dssp HTTCCEEEEEE-EEEEEEEEEEET---TEEEEEEEEEEEEEBCSCSEEEET---TTEEEEEEECTTTCBEEEEEETT---
T ss_pred HhCCEEEcCCC-cccccceEEeee---cCcceecCCCcEEEEEehhhcccc---CCCCeEEEEEcCCCcEEEEEcCC---
Confidence 99999999863 345655555443 456777777788888777766543 45889999999999999999863
Q ss_pred eEEEeccCCCCCCCchHHHHHHHHHHHHHHh
Q 029484 156 LQGVQFHPESIITTEGKTIVRNFIKMIVRKE 186 (192)
Q Consensus 156 ~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~~ 186 (192)
++|+|||||+..++.|.+||+||++.+.+.+
T Consensus 607 ~~GVQFHPE~~~t~~G~~Ll~nFl~~~~~~~ 637 (645)
T 3r75_A 607 FSSMQFHAESVLTVDGPRILGEAITHAIRRE 637 (645)
T ss_dssp EEEESSBTTSTTCTTHHHHHHHHHHHHTTTT
T ss_pred EEEEEeCCeecCCcchHHHHHHHHHHHHhcc
Confidence 7999999999988899999999999986543
|
| >4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-32 Score=208.20 Aligned_cols=167 Identities=22% Similarity=0.270 Sum_probs=115.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHH---HHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQT---VLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~---~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
|+.++|+.+|+++++++. .+++. ++|+||+|| ++++.+....++. ++. .+.++||||||+|||+|++++
T Consensus 17 si~~al~~~G~~~~v~~~----~~~l~--~~D~lilPG-~g~~~~~~~~~~~~~~i~~~~~~~~PvlGIClG~QlL~~~~ 89 (211)
T 4gud_A 17 SVKFAIERLGYAVTISRD----PQVVL--AADKLFLPG-VGTASEAMKNLTERDLIELVKRVEKPLLGICLGMQLLGKLS 89 (211)
T ss_dssp HHHHHHHHTTCCEEEECC----HHHHH--HCSEEEECC-CSCHHHHHHHHHHTTCHHHHHHCCSCEEEETHHHHTTSSEE
T ss_pred HHHHHHHHCCCEEEEECC----HHHHh--CCCEEEECC-CCCHHHHHHHHHhcChHHHHHHcCCCEEEEchhHhHHHHHh
Confidence 789999999999998753 56666 689999975 4655443332221 221 357899999999999999999
Q ss_pred CCeeeecCCcc--------------------ccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEE
Q 029484 78 GGKIVRSPLGV--------------------MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 137 (192)
Q Consensus 78 gg~v~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~ 137 (192)
|+++.+..... .+..+..+.. ...++++++++....+++.|++.+. .+..++
T Consensus 90 g~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~H~~~v~------~~~~~~ 161 (211)
T 4gud_A 90 EEKGQKADEIVQCLGLVDGEVRLLQTGDLPLPHMGWNTVQV--KEGHPLFNGIEPDAYFYFVHSFAMP------VGDYTI 161 (211)
T ss_dssp CCC----CCCEECCCSSSCEEEECCCTTSCSSEEEEECCEE--CTTCGGGTTCCTTCCEEEEESEECC------CCTTEE
T ss_pred CCcccccCCccccceeccceEEEcccCCcceeeccceeeee--eccChhhcCCCCCcEEEEEeeEEeC------CCCeEE
Confidence 98776643211 0111222222 2367799999988999999999875 245678
Q ss_pred EEcCCCceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHHHH
Q 029484 138 AWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 138 a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~ 185 (192)
|+++++...+....++| ++|+|||||++ ++.|.+||+||++++.++
T Consensus 162 a~~~~g~~~~~~v~~~~-v~GvQFHPE~s-~~~G~~ll~nFl~~~ge~ 207 (211)
T 4gud_A 162 AQCEYGQPFSAAIQAGN-YYGVQFHPERS-SKAGARLIQNFLELRGEN 207 (211)
T ss_dssp EEEESSSEEEEEEEETT-EEEESSCGGGS-HHHHHHHHHHHHHC----
T ss_pred EEecCCCeEEEEEeCCC-EEEEEccCEec-CccHHHHHHHHHHHhccc
Confidence 88888875555555555 99999999986 778999999999987643
|
| >1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=212.72 Aligned_cols=181 Identities=17% Similarity=0.298 Sum_probs=125.8
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhcc--CCCeEEECCCCCCCCCcc------hhHHHHHHh-CC--CCCEEeeeHhH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRK--NPRGVLISPGPGAPQDSG------ISLQTVLEL-GP--TVPLFGVCMGL 70 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglii~GG~~~~~~~~------~~~~~~~~~-~~--~~PilGIC~G~ 70 (192)
+++++++++|+.+++++.+ .+.+++... ++|||||+||++++.+.. .+++.+++. +. ++||||||+||
T Consensus 56 ~~~~~l~~~G~~~~vv~~~-~~~~~i~~~l~~~dglil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~ 134 (315)
T 1l9x_A 56 SYVKYLESAGARVVPVRLD-LTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGF 134 (315)
T ss_dssp HHHHHHHHTTCEEEEECSS-CCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHH
T ss_pred HHHHHHHHCCCEEEEEecC-CCHHHHHHHHhcCCEEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHH
Confidence 4679999999999999875 344554322 799999999998876541 123333332 22 69999999999
Q ss_pred HHHHHHhCCeeeecCCccccccceeeEEc-ccCCCccccCCCCcc--------cccccccccccccC-----CCCCCeEE
Q 029484 71 QCIGEAFGGKIVRSPLGVMHGKSSLVYYD-EKGEDGLLAGLSNPF--------TAGRYHSLVIEKES-----FPSDALEV 136 (192)
Q Consensus 71 Q~l~~~~gg~v~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~--------~~~~~H~~~v~~~~-----l~~~~~~~ 136 (192)
|+|+.++||++...... .++...++... ....+.+|+.++..+ .++.+|+++|..+. .+++++++
T Consensus 135 Qll~~a~GG~~~~~~~~-~~g~~~p~~~~~~~~~s~L~~~~~~~~~~~l~~~~~~~~~H~~~V~~~~~~~~~~l~~g~~v 213 (315)
T 1l9x_A 135 EELSLLISGECLLTATD-TVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNV 213 (315)
T ss_dssp HHHHHHHHSSCCCEEEE-EEEEEECCEECSTTTTCSTTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTCHHHHHHEEE
T ss_pred HHHHHHhCCcccccccc-ccCCCCCeeeccCCCCChHHHhcChhhhhhccccceEEEhhhhhcCccccccccccCCCCEE
Confidence 99999999986543321 23332333332 223567888876432 23459999997220 03468999
Q ss_pred EEEcCCCceEEE---eeCCCCceEEEeccCCCCC---CC------------chHHHHHHHHHHHHHH
Q 029484 137 TAWTEDGLIMAA---RHKKYKHLQGVQFHPESII---TT------------EGKTIVRNFIKMIVRK 185 (192)
Q Consensus 137 ~a~s~~~~i~ai---~~~~~~~~~g~QfHPE~~~---~~------------~~~~l~~~f~~~~~~~ 185 (192)
+|+++|+.++++ ++++++ ++|+|||||+.. +. ++.+||++|++.+.+.
T Consensus 214 ~A~s~dg~ve~i~~i~~~~~~-i~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~lf~~Fv~~a~~~ 279 (315)
T 1l9x_A 214 LTTNTDGKIEFISTMEGYKYP-VYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKN 279 (315)
T ss_dssp EEEEESSSCEEEEEEEESSSC-EEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHTTS
T ss_pred EEEcCCCCEEEEEEeccCCCC-EEEEEeCCCCCcccccccccCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 999999986666 666655 999999999864 12 3779999999988643
|
| >2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-30 Score=193.88 Aligned_cols=160 Identities=19% Similarity=0.296 Sum_probs=115.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch----hHHHHHHhCCCCCEEeeeHhHHHHHHHh
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI----SLQTVLELGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~----~~~~~~~~~~~~PilGIC~G~Q~l~~~~ 77 (192)
++.++++++|+++.+++. .+++. ++||||++||++++++... +.+.++ ++++||||||+|||+|+.++
T Consensus 14 ~~~~~l~~~G~~~~~~~~----~~~~~--~~dglil~GG~~~~~~~~~~~~~~~~~i~--~~~~PilGIC~G~Qll~~~~ 85 (186)
T 2ywj_A 14 EHEEAIKKAGYEAKKVKR----VEDLE--GIDALIIPGGESTAIGKLMKKYGLLEKIK--NSNLPILGTCAGMVLLSKGT 85 (186)
T ss_dssp HHHHHHHHTTSEEEEECS----GGGGT--TCSEEEECCSCHHHHHHHHHHTTHHHHHH--TCCCCEEEETHHHHHHSSCC
T ss_pred HHHHHHHHCCCEEEEECC----hHHhc--cCCEEEECCCCchhhhhhhhccCHHHHHH--hcCCcEEEECHHHHHHHHHh
Confidence 467899999999998874 23344 7899999999876543211 223333 78899999999999999999
Q ss_pred CCeeeecCCccccccceeeEEcccC------CCccccCCCCcccccccccccccccCCC-CCCeEEEEEcCCCceEEEee
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYDEKG------EDGLLAGLSNPFTAGRYHSLVIEKESFP-SDALEVTAWTEDGLIMAARH 150 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~H~~~v~~~~l~-~~~~~~~a~s~~~~i~ai~~ 150 (192)
||++.... ...+.... ...++ .+.++.++ +.+.++++|++.+.. + +++++++|++ |+.++|+++
T Consensus 86 gg~~~~lg--~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~H~~~v~~---l~~~~~~v~a~s-d~~~~a~~~ 156 (186)
T 2ywj_A 86 GINQILLE--LMDITVKR--NAYGRQVDSFEKEIEFKDL-GKVYGVFIRAPVVDK---ILSDDVEVIARD-GDKIVGVKQ 156 (186)
T ss_dssp SSCCCCCC--CSSEEEET--TTTCSSSCCEEEEEEETTT-EEEEEEESSCCEEEE---ECCTTCEEEEEE-TTEEEEEEE
T ss_pred CCCcCccC--CCceeEEe--ccCCCcccceecccccccC-CcEEEEEEecceeee---cCCCCeEEEEEE-CCEEEEEee
Confidence 99853221 11111000 00000 12355666 667889999999975 4 5789999999 788999997
Q ss_pred CCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 151 KKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 151 ~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
+ +++|+|||||++. ++.+||++|++.+.
T Consensus 157 ~---~~~gvQfHPE~~~--~g~~l~~~F~~~~~ 184 (186)
T 2ywj_A 157 G---KYMALSFHPELSE--DGYKVYKYFVENCV 184 (186)
T ss_dssp T---TEEEESSCGGGST--THHHHHHHHHHHHT
T ss_pred C---CEEEEECCCCcCC--chhHHHHHHHHHHh
Confidence 4 4999999999863 58999999998864
|
| >3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-29 Score=192.57 Aligned_cols=168 Identities=14% Similarity=0.199 Sum_probs=126.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc--------chhHHHHHH-hCCCCCEEeeeHhHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS--------GISLQTVLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~--------~~~~~~~~~-~~~~~PilGIC~G~Q~ 72 (192)
++.++|+.+|+++.+++..+ ++ .++|+|||+||.....+. ....+.+++ .++++||||||+|+|+
T Consensus 18 ~~~~~l~~~g~~~~~~~~~~----~~--~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~ql 91 (213)
T 3d54_D 18 DAYHALEINGFEPSYVGLDD----KL--DDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKLIMGICNGFQI 91 (213)
T ss_dssp HHHHHHHTTTCEEEEECTTC----CC--SSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHHHH
T ss_pred HHHHHHHHCCCEEEEEecCC----Cc--ccCCEEEECCCCchhhhhccccccccHHHHHHHHHHHHCCCEEEEECHHHHH
Confidence 46889999999999998631 22 379999999996543321 223444544 3578999999999999
Q ss_pred HHHH--hCCeeeecCCccccccceeeEEcccCCCccccCCCC--cccccccc---cccccccCCCCCCeEEEEEcCC---
Q 029484 73 IGEA--FGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN--PFTAGRYH---SLVIEKESFPSDALEVTAWTED--- 142 (192)
Q Consensus 73 l~~~--~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~H---~~~v~~~~l~~~~~~~~a~s~~--- 142 (192)
|+.+ ++|++.+......+.++..+.... .++++++.++. .+.++.+| ++.+. ++++.++|++++
T Consensus 92 La~aGll~g~v~~~~~~~~~~g~~~v~~~~-~~~~l~~~~~~~~~~~~~~~H~~~s~~~~-----~~~~~~~a~~~~~ng 165 (213)
T 3d54_D 92 LIEMGLLKGALLQNSSGKFICKWVDLIVEN-NDTPFTNAFEKGEKIRIPIAHGFGRYVKI-----DDVNVVLRYVKDVNG 165 (213)
T ss_dssp HHHHTSSCSEEECCSSSSCBCCEEEEEECC-CSSTTSTTSCTTCEEEEECCBSSCEEECS-----SCCEEEEEESSCSSC
T ss_pred HHHcCCCCCCeecCCCCceEeeeEEEEeCC-CCCceeeccCCCCEEEEEeecCceEEEec-----CCCcEEEEEcCCCCC
Confidence 9999 999998876332356677776642 35778888874 46666688 55553 267899999876
Q ss_pred --CceEEEeeCCCCceEEEeccCCCCC-----CCchHHHHHHHHHHH
Q 029484 143 --GLIMAARHKKYKHLQGVQFHPESII-----TTEGKTIVRNFIKMI 182 (192)
Q Consensus 143 --~~i~ai~~~~~~~~~g~QfHPE~~~-----~~~~~~l~~~f~~~~ 182 (192)
+.++|+++++++ ++|+|||||++. .+.+.+||++|++.+
T Consensus 166 ~~~~i~a~~~~~~~-~~gvQfHPE~~~~~~~~~~~g~~l~~~f~~~~ 211 (213)
T 3d54_D 166 SDERIAGVLNESGN-VFGLMPHPERAVEELIGGEDGKKVFQSILNYL 211 (213)
T ss_dssp CGGGEEEEECSSSC-EEEECSCSTTTTSTTTTCSTTSHHHHHHHHHC
T ss_pred CccceeEEEcCCCC-EEEEeCCHHHhcCHhhhcCccHHHHHHHHHHh
Confidence 489999986655 999999999986 368899999999875
|
| >2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-30 Score=205.08 Aligned_cols=179 Identities=20% Similarity=0.239 Sum_probs=119.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCC--------H-HHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELT--------V-EELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~--------~-~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~ 72 (192)
|.++..+.|.++.++..+... . +.+. ++|||||+||++.+...+ .+..++. ++.++||||||+|||+
T Consensus 32 L~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~--~~dgiil~GG~~~~~~~~-~~~~i~~~~~~~~PilGIC~G~Ql 108 (273)
T 2w7t_A 32 FEHCQIALQVRLDILYVDSEELEGPNADEARKALL--GCDGIFVPGGFGNRGVDG-KCAAAQVARMNNIPYFGVXLGMQV 108 (273)
T ss_dssp HHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHH--TCSEEEECCCCTTTTHHH-HHHHHHHHHHHTCCEEEETHHHHH
T ss_pred HHHHHHhcCCceEEeccChhhcccccchhHHHHHh--hCCEEEecCCCCCcCchh-HHHHHHHHHHCCCcEEEECcCHHH
Confidence 444455667778888764322 1 1222 899999999988754332 2333443 3568999999999999
Q ss_pred HHHHhCCeeeecC------Ccc----c----------------cccceeeEEcccCCCccccCCCCcccccc--cccccc
Q 029484 73 IGEAFGGKIVRSP------LGV----M----------------HGKSSLVYYDEKGEDGLLAGLSNPFTAGR--YHSLVI 124 (192)
Q Consensus 73 l~~~~gg~v~~~~------~~~----~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~H~~~v 124 (192)
|+.++||++.... .+. . +.+|+.+.... ..+.+++.++....+++ +|+|.+
T Consensus 109 l~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~v~~~~-~~s~l~~~~~~~~~v~~~H~Hsy~v 187 (273)
T 2w7t_A 109 AVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMGANMHLGACDVYIVE-KSSIMAKIYSKSNIVVERHRHRYEV 187 (273)
T ss_dssp HHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCSSCBCCEEEEEEEEECC-TTSHHHHHTTTCSEEEEEEEECCEE
T ss_pred HHHHHhCccccccCCchhhcccccCCCceeeccccccccCCcccccceEEEEec-CCcHHHHHhCCCceEEeeccccccc
Confidence 9999999984211 000 0 12233443321 13445555554444555 567877
Q ss_pred cccCC--C-CCCeEEEEEcCC----C-ceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHHHHHHHH
Q 029484 125 EKESF--P-SDALEVTAWTED----G-LIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIVRK 185 (192)
Q Consensus 125 ~~~~l--~-~~~~~~~a~s~~----~-~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~~~~ 185 (192)
+.+.+ + +++++++|+++| + .+++++++++|+++|+|||||++.++ .+.+||++|++.+.+.
T Consensus 188 ~~~~v~~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQfHPE~~~~~~~~~~l~~~Fv~~~~~~ 257 (273)
T 2w7t_A 188 NTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFISTPMDPAPTYLSFMAAAAKK 257 (273)
T ss_dssp CGGGHHHHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESSCGGGSCBTTBCCHHHHHHHHHHHTC
T ss_pred CHHHHHhhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeCCCCcCCCCCchHHHHHHHHHHHHHH
Confidence 54211 2 468999999988 5 89999999988777999999998766 3599999999988754
|
| >2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-29 Score=200.84 Aligned_cols=155 Identities=16% Similarity=0.157 Sum_probs=106.3
Q ss_pred CCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCeeeecC------Ccc-----------ccc-
Q 029484 31 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSP------LGV-----------MHG- 91 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~v~~~~------~~~-----------~~~- 91 (192)
++|||||+||+++.... ...+.++. ++.++||||||+|||+|+.++||++.... .+. .+.
T Consensus 90 ~~dgiil~GG~~~~~~~-~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~~h~~ 168 (289)
T 2v4u_A 90 KADGILVPGGFGIRGTL-GKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEHNP 168 (289)
T ss_dssp HCSEEEECSCCSSTTHH-HHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTTCSEEEEEECCBCCT
T ss_pred hCCEEEecCCCCchhHH-HHHHHHHHHHHcCCcEEEECccHHHHHHHHhccccccccCcccccCccccccceecchhhcc
Confidence 79999999998874332 23344444 46789999999999999999999985211 000 011
Q ss_pred ---------cceeeEEcccCCCccccCCCCccccc--ccccccccccCC--CC-CCeEEEEEcCCCc-eEEEeeCCCCce
Q 029484 92 ---------KSSLVYYDEKGEDGLLAGLSNPFTAG--RYHSLVIEKESF--PS-DALEVTAWTEDGL-IMAARHKKYKHL 156 (192)
Q Consensus 92 ---------~~~~~~~~~~~~~~l~~~~~~~~~~~--~~H~~~v~~~~l--~~-~~~~~~a~s~~~~-i~ai~~~~~~~~ 156 (192)
++..+.... ..+.+++.++....++ .+|+|.|+++.+ ++ ++++++|+++|+. ++|++.+++|++
T Consensus 169 ~~~~~~~~~g~~~v~~~~-~~s~l~~~~~~~~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s~dg~~ieaie~~~~p~~ 247 (289)
T 2v4u_A 169 GNLGGTMRLGIRRTVFKT-ENSILRKLYGDVPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYF 247 (289)
T ss_dssp TCSSCBCEEEEEEEEESC-SCCHHHHHTTSCSEEEEEEEECEEECGGGSGGGTTSSEEEEEEETTSCSEEEEEESSSSCE
T ss_pred cccCCccccceEEEEEec-CCCHHHHhcCCCceEEEecccccccCHHHHHhcccCCeEEEEEcCCCCeEEEEEcCCCCeE
Confidence 123333321 1344555555434444 445666654321 34 7899999999997 999999988867
Q ss_pred EEEeccCCCCCCC-chHHHHHHHHHHHHHHhh
Q 029484 157 QGVQFHPESIITT-EGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 157 ~g~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~ 187 (192)
+|+|||||+..++ ++.+||++|++.+.+...
T Consensus 248 lGvQfHPE~~~~~~~~~~lf~~Fv~~~~~~~~ 279 (289)
T 2v4u_A 248 VGVQFHPEFSSRPMKPSPPYLGLLLAATGNLN 279 (289)
T ss_dssp EEESSBGGGGCBTTBCCHHHHHHHHHHHTCHH
T ss_pred EEEECCCCCCCCCCchHHHHHHHHHHHHhhhh
Confidence 7999999998766 468999999998875443
|
| >1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-28 Score=210.10 Aligned_cols=184 Identities=17% Similarity=0.241 Sum_probs=121.5
Q ss_pred cHHHHHHhCCC----eEEEEeCCCCCHHHHh------ccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhH
Q 029484 2 TFLKYMGELGY----HFEVYRNDELTVEELK------RKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL 70 (192)
Q Consensus 2 ~l~~~l~~~g~----~~~v~~~~~~~~~~~~------~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~ 70 (192)
|+.++|+.+|+ ++.+++.+ .+++. ..++||||++||++++...+ ..+.++. ++.++|+||||+||
T Consensus 307 Si~~aL~~~G~~~~~~V~i~~~d---~e~i~~~~~~~l~~~DGIilsGGpg~~~~~g-~~~~i~~a~~~~~PiLGIClG~ 382 (545)
T 1s1m_A 307 SVIEALKHGGLKNRVSVNIKLID---SQDVETRGVEILKGLDAILVPGGFGYRGVEG-MITTARFARENNIPYLGICLGM 382 (545)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEE---HHHHHHHCTTTTTTCSEEEECCCCSSTTHHH-HHHHHHHHHHTTCCEEEETHHH
T ss_pred HHHHHHHHhCcccCCeEEEccCC---HHHhhhhhhhhhhcCCEEEECCCCCCccchh-hHHHHHHHHHCCCcEEEECChH
Confidence 56777777765 45666543 33332 23799999999999876533 2233433 45789999999999
Q ss_pred HHHHHHhCCeeeecCCcc--c--cccceeeEEcc-------------------------------cCCCccccCCCCc--
Q 029484 71 QCIGEAFGGKIVRSPLGV--M--HGKSSLVYYDE-------------------------------KGEDGLLAGLSNP-- 113 (192)
Q Consensus 71 Q~l~~~~gg~v~~~~~~~--~--~~~~~~~~~~~-------------------------------~~~~~l~~~~~~~-- 113 (192)
|+|+.++||++..++... + .+..+++.... -.+++++..+...
T Consensus 383 Qll~va~Gg~v~~l~~a~s~E~~~~~~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmrlG~~~v~l~~~s~l~~iyg~~~ 462 (545)
T 1s1m_A 383 QVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPT 462 (545)
T ss_dssp HHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCEEEEEEEEECTTCHHHHHTTSSE
T ss_pred HHHHHHhCCceecCCCCcccccCCCCCCceEEeecccccccccccccccccccCccccccceeeEeccCCHHHHhcCCce
Confidence 999999999988654221 0 11111111100 0012222211111
Q ss_pred cccccccccccccc---CCCCCCeEEEEEcCCC-ceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHHHHHHHHhhh
Q 029484 114 FTAGRYHSLVIEKE---SFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIVRKEAA 188 (192)
Q Consensus 114 ~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~-~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~~ 188 (192)
+...+.|.|.|+.. .+.+.+++++|+++|+ .+++++++++|+++|+|||||+..++ ++.+||++|++++.+.+..
T Consensus 463 v~e~h~Hry~VNs~~~~~l~~~gl~v~a~s~dg~~VEaie~~~~p~flGVQFHPE~~~~p~~g~~LF~~Fv~aa~~~~~~ 542 (545)
T 1s1m_A 463 IVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKR 542 (545)
T ss_dssp EEEEEEECCEECHHHHHHHHHTTCEEEEECSSSCCEEEEECTTSSSEEEESSCGGGTCCTTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCcceEEChHHhhhcccCCeEEEEECCCCCceEEEEeCCCCEEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhh
Confidence 23345667766432 2224789999999988 79999999998666999999999888 5899999999999876654
Q ss_pred h
Q 029484 189 D 189 (192)
Q Consensus 189 ~ 189 (192)
+
T Consensus 543 ~ 543 (545)
T 1s1m_A 543 Q 543 (545)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-28 Score=209.35 Aligned_cols=182 Identities=20% Similarity=0.182 Sum_probs=118.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-----HHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELT-----VEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-----~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
|.++....|+++.+++++... .++.. .++|||||+||+|++...+. +..++. +++++|+||||+|||+|+.+
T Consensus 323 L~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L-~~~DGIILpGGfGd~~~~g~-i~~ir~a~e~~iPiLGICLGmQlL~~a 400 (550)
T 1vco_A 323 LRHAGIKNRARVEVKWVDAESLEAADLEEAF-RDVSGILVPGGFGVRGIEGK-VRAAQYARERKIPYLGICLGLQIAVIE 400 (550)
T ss_dssp HHHHHHHTTEEEEEEEEEGGGC--CCHHHHT-TTCSCEEECCCCSSTTHHHH-HHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEEEeCccccccchHHHHH-hcCCEEEECCCCCCcchhhh-HHHHHHHHHCCCcEEEECcCHHHHHHH
Confidence 444555678899988664321 22222 37999999999998865433 334443 45789999999999999999
Q ss_pred hCCeeeecCCcc--c--cccceeeEE--cc-------------------cCCCccccCCCC--ccccccccccccccc--
Q 029484 77 FGGKIVRSPLGV--M--HGKSSLVYY--DE-------------------KGEDGLLAGLSN--PFTAGRYHSLVIEKE-- 127 (192)
Q Consensus 77 ~gg~v~~~~~~~--~--~~~~~~~~~--~~-------------------~~~~~l~~~~~~--~~~~~~~H~~~v~~~-- 127 (192)
+||++..+.... + .+...++.. .. -.+++++..+.. .+...+.|.|.|++.
T Consensus 401 ~Gg~v~~l~~~~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i~~~s~l~~iy~~~~v~e~h~H~Y~Vns~~~ 480 (550)
T 1vco_A 401 FARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPGTLLHRLYGKEEVLERHRHRYEVNPLYV 480 (550)
T ss_dssp HHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEECTTSHHHHHHCCSEEEEEEEESEEECHHHH
T ss_pred hCcccccCCccccccccCCCCCCeEEeccccccccccCCcccccceEEEEccCchhhHhcCCceeeeeccceEEEchHHh
Confidence 999887654210 0 011111110 00 001222222111 112345677777432
Q ss_pred -CCCCCCeEEEEEcCCC------ceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHHHHHHHHh
Q 029484 128 -SFPSDALEVTAWTEDG------LIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIVRKE 186 (192)
Q Consensus 128 -~l~~~~~~~~a~s~~~------~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~~~~~ 186 (192)
.++..+++++|+++|+ .+++++++++|+++|+|||||++.++ ++.+||++|++++.+.+
T Consensus 481 ~~l~~~gl~v~a~s~dG~g~~~~~VeaIe~~~~p~fvGVQFHPE~~~~p~~g~~LF~~Fv~aa~~~~ 547 (550)
T 1vco_A 481 DGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAALAYQ 547 (550)
T ss_dssp HHHHHHTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBTTBCCHHHHHHHHHHHHHT
T ss_pred hccccCCeEEEEEeCCCCccCCCcEEEEEeCCCCEEEEEEeCCccCCCCCChHHHHHHHHHHHHhhc
Confidence 2233589999999884 89999999988545999999999887 58999999999987653
|
| >2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=176.93 Aligned_cols=166 Identities=21% Similarity=0.326 Sum_probs=112.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc----hhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~----~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
..++++++|+++.+++. .+++. ++|+||++||+....+.. .+.+.+++ .++++|+||||+|+|+|+.++
T Consensus 16 ~~~~l~~~g~~~~~~~~----~~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G~q~l~~~~ 89 (196)
T 2nv0_A 16 HIHAIEACGAAGLVVKR----PEQLN--EVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEI 89 (196)
T ss_dssp HHHHHHHTTCEEEEECS----GGGGG--GCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBCC
T ss_pred HHHHHHHCCCEEEEeCC----hHHHh--hCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHHHHHHHHHh
Confidence 45789999999988864 23344 799999999986654321 12344444 468899999999999999999
Q ss_pred CCeeeecCCccccccceeeEEcccC------CCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeC
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYDEKG------EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHK 151 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~ 151 (192)
|+++.+.. +...+.... ...+. .+..+.++++.+.++++|++.+.. ++++++++|++ |+.+++++..
T Consensus 90 gg~~~~~l-g~~~~~~~~--~~~g~~~~~~~~~~~~~~~g~~~~~~~~h~~~v~~---~~~~~~v~a~~-d~~~~a~~~~ 162 (196)
T 2nv0_A 90 AGSDNPHL-GLLNVVVER--NSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHILE---AGENVEVLSEH-NGRIVAAKQG 162 (196)
T ss_dssp C----CCC-CCSCEEEEC--CCSCTTTSEEEEEECCTTCSSCEEEEEESCCEEEE---ECTTCEEEEEE-TTEEEEEEET
T ss_pred cCCCCCcc-cCCceeEec--cCCCcccccccCCcccccCCCceEEEEEecceecc---cCCCcEEEEEE-CCEEEEEEEC
Confidence 99764322 111111000 00000 123455566778888999998864 45789999998 6788999874
Q ss_pred CCCceEEEeccCCCCCCCchHHHHHHHHHHHHHHhh
Q 029484 152 KYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 152 ~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~~~ 187 (192)
+++|+|||||.+.. ..++++|++.+.+.|+
T Consensus 163 ---~~~gvQfHPE~~~~---~~l~~~fl~~~~~~~~ 192 (196)
T 2nv0_A 163 ---QFLGCSFHPELTED---HRVTQLFVEMVEEYKQ 192 (196)
T ss_dssp ---TEEEESSCTTSSSC---CHHHHHHHHHHHHHHH
T ss_pred ---CEEEEEECCccCCc---hHHHHHHHHHHHhhhh
Confidence 49999999999632 4899999999876544
|
| >1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-28 Score=184.78 Aligned_cols=164 Identities=17% Similarity=0.179 Sum_probs=110.8
Q ss_pred cHHHHHHhCC-----CeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch------hHHHHHH-hCCCCCEEeeeHh
Q 029484 2 TFLKYMGELG-----YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMG 69 (192)
Q Consensus 2 ~l~~~l~~~g-----~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~------~~~~~~~-~~~~~PilGIC~G 69 (192)
++.++|+++| +++++++..+ + .++|||||+|| +++.+... ..+.+++ +++++||||||+|
T Consensus 15 s~~~~l~~~G~~~~~~~~~~~~~~~----~---~~~dglilpG~-g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G 86 (201)
T 1gpw_B 15 NLYRGVKRASENFEDVSIELVESPR----N---DLYDLLFIPGV-GHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLG 86 (201)
T ss_dssp HHHHHHHHHSTTBSSCEEEEECSCC----S---SCCSEEEECCC-SCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHH
T ss_pred HHHHHHHHcCCCCCceEEEEECCCc----c---cCCCEEEECCC-CcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChh
Confidence 5788999999 9999987531 2 38999999774 55433222 2234444 3678999999999
Q ss_pred HHHHHHHhC--CeeeecCCccccccceeeE---EcccCCCccccCCC-CcccccccccccccccCCCCCCeEEEEEcCC-
Q 029484 70 LQCIGEAFG--GKIVRSPLGVMHGKSSLVY---YDEKGEDGLLAGLS-NPFTAGRYHSLVIEKESFPSDALEVTAWTED- 142 (192)
Q Consensus 70 ~Q~l~~~~g--g~v~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~-~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~- 142 (192)
||+|+.++| |+ .+.. +...+...... ......++++...+ ..+.++++|++.+.. + +++++|++++
T Consensus 87 ~Qll~~~~g~~G~-~~~l-~~~~g~v~~~~~~~~~~~g~~~l~~~~~~~~~~v~~~H~~~v~~---~--~~~vla~s~~~ 159 (201)
T 1gpw_B 87 MQLLFEESEEAPG-VKGL-SLIEGNVVKLRSRRLPHMGWNEVIFKDTFPNGYYYFVHTYRAVC---E--EEHVLGTTEYD 159 (201)
T ss_dssp HHTTSSEETTEEE-EECC-CSSSEEEEECCCSSCSEEEEEEEEESSSSCCEEEEEEESEEEEE---C--GGGEEEEEEET
T ss_pred HHHHHHhhccCCC-CCCc-ceeeeEEEEcCCCCCCcccceeeEeccCCCCCeEEEECcceecc---C--CCEEEEEEccC
Confidence 999999996 33 1111 11011110000 00000123333333 467889999999975 3 6889999876
Q ss_pred C-ceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 143 G-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 143 ~-~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
+ .+++++.++ + ++|+|||||++ .+.+.+||++|++.+.
T Consensus 160 g~~~~a~~~~~-~-i~gvQfHPE~~-~~~~~~l~~~f~~~~~ 198 (201)
T 1gpw_B 160 GEIFPSAVRKG-R-ILGFQFHPEKS-SKIGRKLLEKVIECSL 198 (201)
T ss_dssp TEEEEEEEEET-T-EEEESSCGGGS-HHHHHHHHHHHHHHSS
T ss_pred CceEEEEEECC-C-EEEEECCCccc-CHhHHHHHHHHHHHhh
Confidence 5 799999875 5 99999999997 6688999999998754
|
| >1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.1e-27 Score=180.73 Aligned_cols=163 Identities=18% Similarity=0.309 Sum_probs=114.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc----chhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~----~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
+.++|+.+|+++.+++. .+++. ++|||||+||++...+. ....+.+++ +++++||||||+|+|+|+.++
T Consensus 38 ~~~~l~~~G~~~~~~~~----~~~l~--~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~~ 111 (219)
T 1q7r_A 38 HVRAIEACGAEAVIVKK----SEQLE--GLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRI 111 (219)
T ss_dssp HHHHHHHTTCEEEEECS----GGGGT--TCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEEE
T ss_pred HHHHHHHCCCEEEEECC----HHHHh--hCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHHh
Confidence 35788999999999875 23343 79999999998654321 112344444 467899999999999999999
Q ss_pred CCeeeecCCccccccceeeEEcc---cC------CCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEE
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYDE---KG------EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 148 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~~---~~------~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai 148 (192)
|+++.+.. +. .+..+.. +. .+..+.+++..+.++++|++.+.. ++++++++|++ |+.++++
T Consensus 112 gg~~~~~l-g~-----~~~~~~~~~~g~~~~~~~~~~~~~g~g~~~~~~~~h~~~v~~---l~~~~~v~a~s-dg~~ea~ 181 (219)
T 1q7r_A 112 VGYDEPHL-GL-----MDITVERNSFGRQRESFEAELSIKGVGDGFVGVFIRAPHIVE---AGDGVDVLATY-NDRIVAA 181 (219)
T ss_dssp ESSCCCCC-CC-----EEEEEECHHHHCCCCCEEEEEEETTTEEEEEEEESSCCEEEE---ECTTCEEEEEE-TTEEEEE
T ss_pred CCCCcCCc-Cc-----cceEEEecCCCccccceecCcccCCCCCceEEEEEecceeec---cCCCcEEEEEc-CCEEEEE
Confidence 99774322 11 1111100 00 012334455567788899998865 45789999998 7889999
Q ss_pred eeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHHHHhh
Q 029484 149 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 149 ~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~~~ 187 (192)
+.. +++|+|||||++.. .+++++|++.+.+.+.
T Consensus 182 ~~~---~i~GvQfHPE~~~~---~~l~~~fl~~~~~~~~ 214 (219)
T 1q7r_A 182 RQG---QFLGCSFHPELTDD---HRLMQYFLNMVKEAKM 214 (219)
T ss_dssp EET---TEEEESSCGGGSSC---CHHHHHHHHHHHHHHH
T ss_pred EEC---CEEEEEECcccCCC---HHHHHHHHHHHHHhhh
Confidence 974 49999999999632 5899999999876543
|
| >3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-26 Score=197.07 Aligned_cols=174 Identities=18% Similarity=0.274 Sum_probs=111.7
Q ss_pred HHHHhCCCeEEEEeCCCCCH--------HHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHH
Q 029484 5 KYMGELGYHFEVYRNDELTV--------EELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 5 ~~l~~~g~~~~v~~~~~~~~--------~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~ 75 (192)
++..+.+.++.+...+.... +.+. ++||||++||++.+...+ .++.++. +++++|+||||+|||+|+.
T Consensus 318 hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~--~~DgIIlpGG~G~~~~~g-~i~~ir~a~~~~~PiLGIClG~Qll~v 394 (535)
T 3nva_A 318 HASAYIGVRPKLIWIESTDLESDTKNLNEILG--NVNGIIVLPGFGSRGAEG-KIKAIKYAREHNIPFLGICFGFQLSIV 394 (535)
T ss_dssp HHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTT--SCSEEEECCCCSSTTHHH-HHHHHHHHHHHTCCEEEETHHHHHHHH
T ss_pred HHHHHcCCCeEEEEecchhccccccchhhhcc--CCCEEEECCCCCCccHHH-HHHHHHHHHHcCCcEEEECcchhHHHH
Confidence 33344566777765432211 1222 799999999998864433 2334443 5678999999999999999
Q ss_pred HhCCeeeecCCc--ccc---------------------c-----cceeeEEcccCCCccccCCC-Ccccccccccccccc
Q 029484 76 AFGGKIVRSPLG--VMH---------------------G-----KSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLVIEK 126 (192)
Q Consensus 76 ~~gg~v~~~~~~--~~~---------------------~-----~~~~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~v~~ 126 (192)
++||++...... .+. | +.+++.... .+.+.+-++ ..+...+.|.|+|++
T Consensus 395 a~Gg~v~g~qda~s~Ef~~~~~~pvI~~m~eq~~~~~~ggtmrlg~h~v~l~~--gS~L~~iyG~~~I~erHrHryeVNs 472 (535)
T 3nva_A 395 EFARDVLGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKIILKE--GTIAYQLYGKKVVYERHRHRYEVNP 472 (535)
T ss_dssp HHHHTTTCCTTCEETTTCTTCSCEEEECBCSSSCBCSSCCCCEEEEEEEEECT--TSHHHHHHTSSEEEEEEEECCEECH
T ss_pred HhhccccCccCCcccccCCCCCCCeeecchhcccccccCCccccCceEEEEcC--CCcHHHHhCCCeeeecccccceech
Confidence 999998532210 000 0 111122221 111221111 122233445555532
Q ss_pred ---cCCCCCCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHHHHHH
Q 029484 127 ---ESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIV 183 (192)
Q Consensus 127 ---~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~~ 183 (192)
+.+.+.+++++|+++|+.++|++++++|+++|+|||||+.+++ .+.+||++|++++.
T Consensus 473 ~h~q~l~~~GL~vsA~s~DG~IEAIE~~~~pf~vGVQfHPE~~~~p~~~~~LF~~Fv~Aa~ 533 (535)
T 3nva_A 473 KYVDILEDAGLVVSGISENGLVEIIELPSNKFFVATQAHPEFKSRPTNPSPIYLGFIRAVA 533 (535)
T ss_dssp HHHHHHHHTTCEEEEECTTCCEEEEECTTSSCEEEESSCGGGGCCSSSCCHHHHHHHHHHT
T ss_pred HHHhhcccCCeEEEEEeCCCCEEEEEeCCCCcEEEEEeCCEecCCCCChhHHHHHHHHHHH
Confidence 1122478999999999999999999999889999999998776 58999999999874
|
| >1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-27 Score=178.88 Aligned_cols=159 Identities=19% Similarity=0.242 Sum_probs=111.2
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc------chhHHHHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~------~~~~~~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
++.++|+++|+++++++.+ +++. ++|||||+| ++++.+. ....+.+++ ++.++||||||+|+|+|+
T Consensus 17 ~~~~~l~~~G~~~~~~~~~----~~l~--~~d~lil~G-~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~ 89 (200)
T 1ka9_H 17 SAAKALEAAGFSVAVAQDP----KAHE--EADLLVLPG-QGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLY 89 (200)
T ss_dssp HHHHHHHHTTCEEEEESST----TSCS--SCSEEEECC-CSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTS
T ss_pred HHHHHHHHCCCeEEEecCh----HHcc--cCCEEEECC-CCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcHHHHHHH
Confidence 4678999999999998742 2333 799999966 3544221 123445554 467899999999999999
Q ss_pred HH---hC---------CeeeecCC-ccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcC
Q 029484 75 EA---FG---------GKIVRSPL-GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE 141 (192)
Q Consensus 75 ~~---~g---------g~v~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 141 (192)
.+ +| +++.+... ...+.+|+.+.... + +.+++. +.++++|++.+ . ..+. .+ |+++
T Consensus 90 ~~~~~~Gg~~~l~~~~g~v~~~~~~~~~~~G~~~v~~~~----~-l~~~~~-~~~~~~Hs~~~-~---~~~~-~v-a~s~ 157 (200)
T 1ka9_H 90 EGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGWNALEFGG----A-FAPLTG-RHFYFANSYYG-P---LTPY-SL-GKGE 157 (200)
T ss_dssp SEETTSTTCCCCCSSSSEEEECCSSSSSEEEEEECEECG----G-GGGGTT-CEEEEEESEEC-C---CCTT-CC-EEEE
T ss_pred HhccccCCcCCccccccEEEECCCCCCCceeEEEEEech----h-hhcCCC-CCEEEeccccc-C---CCCC-cE-EEEE
Confidence 99 68 67766541 11233455555442 3 667766 78889999998 5 2233 45 7777
Q ss_pred C-C-ceEEEeeCCCCceEEEeccCCCCCCCchHHHH---HHHHHHH
Q 029484 142 D-G-LIMAARHKKYKHLQGVQFHPESIITTEGKTIV---RNFIKMI 182 (192)
Q Consensus 142 ~-~-~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~---~~f~~~~ 182 (192)
+ + .++++..++ +++|+|||||++ .+.+.+|| ++|++.+
T Consensus 158 ~~g~~~~~~~~~~--~i~gvQfHPE~~-~~~g~~l~~~~~~F~~~~ 200 (200)
T 1ka9_H 158 YEGTPFTALLAKE--NLLAPQFHPEKS-GKAGLAFLALARRYFEVL 200 (200)
T ss_dssp ETTEEEEEEEECS--SEEEESSCTTSS-HHHHHHHHHHHHHHC---
T ss_pred eCCeEEEEEEeeC--CEEEEecCCCcC-ccchhHHHHHHHHHHhhC
Confidence 6 5 688888765 499999999997 37788999 9998753
|
| >2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-26 Score=175.09 Aligned_cols=158 Identities=20% Similarity=0.287 Sum_probs=108.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc----chhHHHHHH-hCCC-CCEEeeeHhHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLE-LGPT-VPLFGVCMGLQCIGE 75 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~----~~~~~~~~~-~~~~-~PilGIC~G~Q~l~~ 75 (192)
++.++++++|+++++++.. +++. ++||||++||+....+. ..+.+.+++ .+++ +||||||+|||+|+.
T Consensus 16 ~~~~~l~~~G~~~~~~~~~----~~l~--~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~ 89 (191)
T 2ywd_A 16 EHKEALKRLGIEAKEVRKK----EHLE--GLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAGAIWLAK 89 (191)
T ss_dssp HHHHHHHTTTCCCEEECSG----GGGT--TCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETHHHHHHEE
T ss_pred HHHHHHHHCCCEEEEeCCh----hhhc--cCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEECHHHHHHHH
Confidence 5788999999999998742 2444 79999999995322111 123344444 4578 999999999999999
Q ss_pred HhCC-eeeecCCccccccceeeEEcc---cC------CCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCce
Q 029484 76 AFGG-KIVRSPLGVMHGKSSLVYYDE---KG------EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 145 (192)
Q Consensus 76 ~~gg-~v~~~~~~~~~~~~~~~~~~~---~~------~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i 145 (192)
++|+ ++.+.. + +.+..... ++ .+..+.++ +.+.++++|++.+.. ++++++++|++ ++.+
T Consensus 90 ~~gg~~~~~~l-g-----~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~Hs~~v~~---l~~~~~~~a~~-~~~~ 158 (191)
T 2ywd_A 90 EIVGYPEQPRL-G-----VLEAWVERNAFGRQVESFEEDLEVEGL-GSFHGVFIRAPVFRR---LGEGVEVLARL-GDLP 158 (191)
T ss_dssp EETTCTTCCCC-C-----CEEEEEETTCSCCSSSEEEEEEEETTT-EEEEEEEESCCEEEE---ECTTCEEEEEE-TTEE
T ss_pred HhCCCCCCccc-c-----ccceEEEcCCcCCccccccccccccCC-CceeEEEEcccceec---cCCCcEEEEEE-CCEE
Confidence 9998 542211 1 01111000 00 01233334 556778899998864 44689999998 6889
Q ss_pred EEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHH
Q 029484 146 MAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182 (192)
Q Consensus 146 ~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~ 182 (192)
++++.+ +++|+|||||++. +. +++++|++.+
T Consensus 159 ~a~~~~---~~~gvQfHPE~~~--~~-~l~~~f~~~~ 189 (191)
T 2ywd_A 159 VLVRQG---KVLASSFHPELTE--DP-RLHRYFLELA 189 (191)
T ss_dssp EEEEET---TEEEESSCGGGSS--CC-HHHHHHHHHH
T ss_pred EEEEEC---CEEEEEeCCCCCC--Cc-HHHHHHHHHh
Confidence 999975 3999999999863 33 9999999875
|
| >2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-25 Score=172.73 Aligned_cols=158 Identities=16% Similarity=0.234 Sum_probs=105.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc----chhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~----~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
+.++|+.+|+++.+++. .+++. ++|+|||+||+....+. ..+.+.+++ .++++||||||+|+|+|+.++
T Consensus 35 ~~~~l~~~g~~~~~~~~----~~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~ 108 (208)
T 2iss_D 35 HVEALHKLGVETLIVKL----PEQLD--MVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCAGVILLAKRI 108 (208)
T ss_dssp HHHHHHHTTCEEEEECS----GGGGG--GCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHEEEE
T ss_pred HHHHHHHCCCEEEEeCC----hHHHh--hCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECHHHHHHHHHc
Confidence 45788899999988864 23444 79999999985433221 112344544 467899999999999999999
Q ss_pred CCeeeecCCccccccceeeEEcccC---------CCccccCCC-CcccccccccccccccCCCCCCeEEEEEcCCCceEE
Q 029484 78 GGKIVRSPLGVMHGKSSLVYYDEKG---------EDGLLAGLS-NPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMA 147 (192)
Q Consensus 78 gg~v~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a 147 (192)
|++..+.. | +.+..+.... .+..+.+++ +.+.++++|++.+.. ++++++++|++ |+.+++
T Consensus 109 gg~~~~~l-----g-~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~---~~~~~~v~a~~-d~~~~a 178 (208)
T 2iss_D 109 KNYSQEKL-----G-VLDITVERNAYGRQVESFETFVEIPAVGKDPFRAIFIRAPRIVE---TGKNVEILATY-DYDPVL 178 (208)
T ss_dssp C---CCCC-----C-CEEEEEETTTTCSGGGCEEEEECCGGGCSSCEEEEESSCCEEEE---ECSSCEEEEEE-TTEEEE
T ss_pred CCCCCCCc-----c-ccceEEEecCCCcccccccCCcccccCCCCceEEEEEeCccccc---CCCCcEEEEEE-CCEEEE
Confidence 98532211 1 1111111000 123344454 567888899988864 35789999988 688999
Q ss_pred EeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHH
Q 029484 148 ARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182 (192)
Q Consensus 148 i~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~ 182 (192)
++.. + ++|+|||||.+.. .+++++|++.+
T Consensus 179 ~~~~--~-i~GvQfHPE~~~~---~~l~~~fl~~~ 207 (208)
T 2iss_D 179 VKEG--N-ILACTFHPELTDD---LRLHRYFLEMV 207 (208)
T ss_dssp EEET--T-EEEESSCGGGSSC---CHHHHHHHTTC
T ss_pred EEEC--C-EEEEEeCCCcCCc---HHHHHHHHHHh
Confidence 9864 4 9999999999743 38999998653
|
| >2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-24 Score=165.75 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=110.1
Q ss_pred HHHHHHhC---CCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc------chhHHHHHH-hCC-CCCEEeeeHhHH
Q 029484 3 FLKYMGEL---GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGP-TVPLFGVCMGLQ 71 (192)
Q Consensus 3 l~~~l~~~---g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~------~~~~~~~~~-~~~-~~PilGIC~G~Q 71 (192)
..++|+.+ |+++.+++. .+++. ++|||||+||+.+..+. ..+.+.+++ ++. ++||||||+|||
T Consensus 18 ~~~~l~~~~~~G~~~~~~~~----~~~l~--~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~Q 91 (227)
T 2abw_A 18 HINHFIKLQIPSLNIIQVRN----VHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCI 91 (227)
T ss_dssp HHHHHHTTCCTTEEEEEECS----HHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHH
T ss_pred HHHHHHHhccCCeEEEEEcC----ccccc--cCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHH
Confidence 46788888 988887763 35555 79999999997543221 122344444 467 899999999999
Q ss_pred HHHHHhCCeeeecCC--ccccccceeeEEccc---C------CCccccCC----CCcccccccccccccccCCCCCCeEE
Q 029484 72 CIGEAFGGKIVRSPL--GVMHGKSSLVYYDEK---G------EDGLLAGL----SNPFTAGRYHSLVIEKESFPSDALEV 136 (192)
Q Consensus 72 ~l~~~~gg~v~~~~~--~~~~~~~~~~~~~~~---~------~~~l~~~~----~~~~~~~~~H~~~v~~~~l~~~~~~~ 136 (192)
+|+.++|+++..... ....|. .++.+... . .+..+.++ +..+..++.|++.+.. +.++++++
T Consensus 92 lL~~~~gg~~~~~~~~~~~~lG~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~h~~~v~~--~~~~~~~v 168 (227)
T 2abw_A 92 LLSKNVENIKLYSNFGNKFSFGG-LDITICRNFYGSQNDSFICSLNIISDSSAFKKDLTAACIRAPYIRE--ILSDEVKV 168 (227)
T ss_dssp HTEEEEECCCSCCTTGGGSCCCC-EEEEEECCC----CCEEEEECEECCCCTTCCTTCEEEEESCCEEEE--ECCTTCEE
T ss_pred HHHHHhcCCccccccccccccCc-eeEEEEecCCCccccccccccccccccccCCCceeEEEEEcceEee--cCCCCcEE
Confidence 999999987632100 011121 12221110 0 01122222 3456667778887764 21578999
Q ss_pred EEEcC-----CCceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHHHHh
Q 029484 137 TAWTE-----DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKE 186 (192)
Q Consensus 137 ~a~s~-----~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~~ 186 (192)
+|+++ ++.+++++.. +++|+|||||++.. ..++++|++.+.+..
T Consensus 169 la~~~~~~~g~~~~~a~~~~---~v~gvQfHPE~~~~---~~l~~~Fl~~~~~~~ 217 (227)
T 2abw_A 169 LATFSHESYGPNIIAAVEQN---NCLGTVFHPELLPH---TAFQQYFYEKVKNYK 217 (227)
T ss_dssp EEEEEETTTEEEEEEEEEET---TEEEESSCGGGSSC---CHHHHHHHHHHHHHH
T ss_pred EEEcccccCCCCceEEEEEC---CEEEEEECCeeCCC---cHHHHHHHHHHHhhh
Confidence 99986 6788899864 49999999999732 489999999886443
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-24 Score=187.67 Aligned_cols=167 Identities=19% Similarity=0.191 Sum_probs=115.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch------hHHHHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~------~~~~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
++.++++++|+++.+++..+ ...+. ++|||||+|| |++..... ..+.+++ +++++||||||+|||+|+
T Consensus 19 ~~~~~l~~~G~~~~vv~~~~--~~~l~--~~DglILpGg-G~~~~~~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~ 93 (555)
T 1jvn_A 19 SLTNAIEHLGYEVQLVKSPK--DFNIS--GTSRLILPGV-GNYGHFVDNLFNRGFEKPIREYIESGKPIMGIXVGLQALF 93 (555)
T ss_dssp HHHHHHHHTTCEEEEESSGG--GCCST--TCSCEEEEEC-SCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEEEHHHHTTE
T ss_pred HHHHHHHHCCCEEEEECCcc--ccccc--cCCEEEECCC-CchHhHhhhhhhccHHHHHHHHHHcCCcEEEEchhhhhhh
Confidence 57889999999999987421 11133 7999999874 44322111 2334443 467899999999999999
Q ss_pred HHh------------CCeeeecCC---ccccccceeeEEcccCCCccccCCCCcccccccccccccccC----CCCCCeE
Q 029484 75 EAF------------GGKIVRSPL---GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKES----FPSDALE 135 (192)
Q Consensus 75 ~~~------------gg~v~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~----l~~~~~~ 135 (192)
.++ |+++.+... ...+.+|+.+... +++|+.++..+.++++|++.+...+ ++++++.
T Consensus 94 ~a~~egg~~~~Lg~lgg~v~~~~~~~~~~~~~G~~~v~~~----~~L~~~l~~~~~~~~vHS~~~~~i~~~~~~L~~g~~ 169 (555)
T 1jvn_A 94 AGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPS----ENLFFGLDPYKRYYFVHSFAAILNSEKKKNLENDGW 169 (555)
T ss_dssp EEETTBTTCCCCCSEEEEEEECCTTTSCSSEEEEECCCCC----TTCCTTCCTTSCEEEEESEECBCCHHHHHHHHHTTC
T ss_pred hhhhcCCCccccCCCCcEEEECCcCCCCCccccceEEEEc----CHHHhhCCCCceEEEEEEEEEEecccccccCCCCCE
Confidence 998 677776531 1223344444322 6789888877778888988875311 0124577
Q ss_pred EEEEcC---CCceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHH
Q 029484 136 VTAWTE---DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 136 ~~a~s~---~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
++|+++ |+.+++++.. +++|+|||||++ .+.+.+||++|++.
T Consensus 170 vlA~s~~~~D~~i~ai~~~---~i~GvQFHPE~s-~~~g~~l~~~Fl~~ 214 (555)
T 1jvn_A 170 KIAKAKYGSEEFIAAVNKN---NIFATQFHPEKS-GKAGLNVIENFLKQ 214 (555)
T ss_dssp EEEEEEETTEEEEEEEEET---TEEEESSBGGGS-HHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCeEEEEEeC---CEEEEEeCcEec-ChhHHHHHHHHHhc
Confidence 888876 4679999942 499999999985 45678999999975
|
| >2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-22 Score=162.19 Aligned_cols=160 Identities=17% Similarity=0.084 Sum_probs=106.3
Q ss_pred HHHHHHhCCCeEEEEeCCCC-----------------CHHHHhccCCCeEEECCCCCCCCC--cchhHHHH----HH-hC
Q 029484 3 FLKYMGELGYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGAPQD--SGISLQTV----LE-LG 58 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~-----------------~~~~~~~~~~dglii~GG~~~~~~--~~~~~~~~----~~-~~ 58 (192)
+.+.|.+.+.++++..+... +.+++...+|||+||+|||....+ ..+|...+ +. .+
T Consensus 66 f~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~~~~~ed~~yw~el~~li~~~~~ 145 (312)
T 2h2w_A 66 LLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRH 145 (312)
T ss_dssp HHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCCCCCCCccCchHHHHHHHHHHHHH
Confidence 45667776766666433211 233443457999999999976543 33343332 22 35
Q ss_pred CCCCEEeeeHhHHHHHHHhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCC-CCCCeEEE
Q 029484 59 PTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVT 137 (192)
Q Consensus 59 ~~~PilGIC~G~Q~l~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~ 137 (192)
.++|+||||+|+|+++.+++|...........| +.+..... .++|+.++++.+.+..+|+..+..+.+ ..++++++
T Consensus 146 ~~~p~LGIC~GaQ~~l~~~~G~~k~~~~~K~~G-v~~~~~~~--~~pL~~g~~~~f~vphsr~~e~~~~~v~~~pga~vL 222 (312)
T 2h2w_A 146 NVYSTMFICWAAQAGLYYFYGIPKYELPQKLSG-VYKHRVAK--DSVLFRGHDDFFWAPHSRYTEVKKEDIDKVPELEIL 222 (312)
T ss_dssp HEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEE-EEEEEESS--CCGGGTTCCSEEEEEEEEEEECCHHHHTTCC-CEEE
T ss_pred cCCcEEEECHHHHHHHHHhCCCccccCCCCEEE-EEEEEEcC--CCccccCCCCceEeeEEeccccCHHHccCCCCCEEE
Confidence 789999999999997777666332222123344 34444443 788999999999888875533322111 11589999
Q ss_pred EEcCCCceEEEeeCCCCceEEEeccCCCC
Q 029484 138 AWTEDGLIMAARHKKYKHLQGVQFHPESI 166 (192)
Q Consensus 138 a~s~~~~i~ai~~~~~~~~~g~QfHPE~~ 166 (192)
|.|+.+.+++++.++.. ++++|||||+.
T Consensus 223 A~S~~~~~q~~~~~~~~-~~~vQgHPEyd 250 (312)
T 2h2w_A 223 AESDEAGVYVVANKSER-QIFVTGHPEYD 250 (312)
T ss_dssp EEETTTEEEEEECSSSS-EEEECSCTTCC
T ss_pred EcCCCCcceEEEecCCC-EEEEECCCCCC
Confidence 99999999999986654 99999999996
|
| >2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-22 Score=159.74 Aligned_cols=156 Identities=15% Similarity=0.083 Sum_probs=106.8
Q ss_pred HHHHHHhCCCeEEEEeCCCC-----------------CHHHHhccCCCeEEECCCCCCCCC--cchhHHHH----HH-hC
Q 029484 3 FLKYMGELGYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGAPQD--SGISLQTV----LE-LG 58 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~-----------------~~~~~~~~~~dglii~GG~~~~~~--~~~~~~~~----~~-~~ 58 (192)
+.+.|.+.+.++++..+... +.+++...+|||+||+|||....+ ..+|...+ +. .+
T Consensus 54 f~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~~~~~ed~~yw~el~~li~~~~~ 133 (301)
T 2vdj_A 54 LLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKT 133 (301)
T ss_dssp HHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTTTTSCGGGSTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCCcCCCcccCchHHHHHHHHHHHHH
Confidence 45566666666665433211 244554458999999999976543 33343332 22 35
Q ss_pred CCCCEEeeeHhHHHHHHHhCC-eeeecCCccccccceeeEEcccCCCccccCCCCccccccccc-----ccccccCCCCC
Q 029484 59 PTVPLFGVCMGLQCIGEAFGG-KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS-----LVIEKESFPSD 132 (192)
Q Consensus 59 ~~~PilGIC~G~Q~l~~~~gg-~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~-----~~v~~~~l~~~ 132 (192)
.++|+||||+|+|+++.+++| ...... ....| +.+.... ...++|+.++++.+.+..+|+ +.|.. . +
T Consensus 134 ~~~~~lgIC~GaQ~~l~~~~G~~k~~~~-~K~~G-v~~~~~~-~~~~pL~~g~~~~f~~phsr~~~~~~~~v~~---~-p 206 (301)
T 2vdj_A 134 NVTSTLHICWGAQAGLYHHYGVQKYPLK-EKMFG-VFEHEVR-EQHVKLLQGFDELFFAVHSRHTEVRESDIRE---V-K 206 (301)
T ss_dssp HEEEEEEETHHHHHHHHHHHCCCCEEEE-EEEEE-EEEEEEC-CSSCGGGTTCCSEEEEEEEEEEECCHHHHHT---C-T
T ss_pred cCCcEEEEcHHHHHHHHHhCCCccccCC-CCEEE-EEEEEec-CCCCccccCCCCceEeeeEeccCcCHHHccC---C-C
Confidence 789999999999997776666 333332 22344 3344443 357889999999998888754 44543 3 4
Q ss_pred CeEEEEEcCCCceEEEeeCCCCceEEEeccCCCC
Q 029484 133 ALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI 166 (192)
Q Consensus 133 ~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~ 166 (192)
+++++|.|+.+.+++++.++.. ++++|||||+.
T Consensus 207 ga~vLA~S~~~~~~~~~~~~~~-~~~vQgHpEyd 239 (301)
T 2vdj_A 207 ELTLLANSEEAGVHLVIGQEGR-QVFALGHSEYS 239 (301)
T ss_dssp TEEEEEEETTTEEEEEEEGGGT-EEEECSCTTCC
T ss_pred CCEEEEeCCCCcceEEEecCCC-EEEEECCCCCC
Confidence 8999999999999999986654 99999999996
|
| >3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.8e-14 Score=131.29 Aligned_cols=177 Identities=19% Similarity=0.202 Sum_probs=112.1
Q ss_pred cHHHHHHhCCCeEEEEeCCC--CCHHHHhccCCCeEEECCCCCCCCCc--ch-----------hHHHHHH-h-CCCCCEE
Q 029484 2 TFLKYMGELGYHFEVYRNDE--LTVEELKRKNPRGVLISPGPGAPQDS--GI-----------SLQTVLE-L-GPTVPLF 64 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~--~~~~~~~~~~~dglii~GG~~~~~~~--~~-----------~~~~~~~-~-~~~~Pil 64 (192)
++.++++.+|+++.+++..+ ....++. ++|+||++||.+..+.. +. +.+.+++ + .+++|+|
T Consensus 1063 ~~~~A~~~aG~~~~~v~~~dl~~~~~~l~--~~d~lvlPGGfSygD~l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvL 1140 (1303)
T 3ugj_A 1063 EMAAAFHRAGFDAIDVHMSDLLGGRIGLG--NFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLAL 1140 (1303)
T ss_dssp HHHHHHHHTTCEEEEEEHHHHHTTSCCGG--GCSEEEECCSCGGGGTTSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHHhCCceEEEeecccccCcccHh--hCCEEEECCCCcchhhhccchhHHHHHHhchhHHHHHHHHHHhCCCcEE
Confidence 46789999999999886411 0112233 79999999995543221 11 1222343 2 5799999
Q ss_pred eeeHhHHHHHHH---hCCe-----eeecCCccccccceeeEEcccCCCccccCCC-Cccccccccccc---ccc-c---C
Q 029484 65 GVCMGLQCIGEA---FGGK-----IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLV---IEK-E---S 128 (192)
Q Consensus 65 GIC~G~Q~l~~~---~gg~-----v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~---v~~-~---~ 128 (192)
|||.|||+|+++ +.|. +.++........|..+.+.. .++++++++. ..+.++-.|+++ +.. + +
T Consensus 1141 GICnG~QlL~e~~gllPg~~~~p~l~~N~s~~f~~r~~~~~v~~-~~s~~~~~~~g~~~~i~vaHgEG~~~~~~~~~l~~ 1219 (1303)
T 3ugj_A 1141 GVCNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFSLVEVTQ-SPSLLLQGMVGSQMPIAVSHGEGRVEVRDDAHLAA 1219 (1303)
T ss_dssp EETHHHHHHHTTGGGSTTCTTCCEEECCTTSSCEEEEEEEEECC-CSCGGGTTCTTCEEEEEEEESSCEEECSSHHHHHH
T ss_pred EECHHHHHHHHhcCcCCCCCCCCeEecCCCCCeEEeCeEEEECC-CCChhhhccCCCEEeeeeEeCCCCeeeCCHHHHHH
Confidence 999999999985 4555 77776665566666666653 4677888875 346666677633 111 1 1
Q ss_pred CCCCCeEEEEEc-------------CCC---ceEEEeeCCCCceEEEeccCCCCCCC--------------chHHHHHHH
Q 029484 129 FPSDALEVTAWT-------------EDG---LIMAARHKKYKHLQGVQFHPESIITT--------------EGKTIVRNF 178 (192)
Q Consensus 129 l~~~~~~~~a~s-------------~~~---~i~ai~~~~~~~~~g~QfHPE~~~~~--------------~~~~l~~~f 178 (192)
|..++...+-+. +++ .|++|.+.+++ ++|++.||||...+ ...+||+|-
T Consensus 1220 l~~~~~v~~rY~d~~g~~~~~yp~NPNGS~~~IaGi~s~~Gr-vlg~MpHPEr~~~~~~~~~~p~~~~~~~pw~~~F~na 1298 (1303)
T 3ugj_A 1220 LESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGR-VTIMMPHPERVFRTVANSWHPENWGEDSPWMRIFRNA 1298 (1303)
T ss_dssp HHHTTCEEEEEBCTTSCBCCSTTTSSSCCGGGEEEEECTTSS-EEEESSBGGGSSBGGGCSSCCTTCCSBCTTHHHHHHH
T ss_pred HHhCCcEEEEEeCCCCCcccCCCCCCCCChhhceEeECCCCC-EEEEcCChHHccccccccCCCcccCCCCcHHHHHHHH
Confidence 112333333332 223 39999999986 99999999997431 245677776
Q ss_pred HHHH
Q 029484 179 IKMI 182 (192)
Q Consensus 179 ~~~~ 182 (192)
.+++
T Consensus 1299 ~~w~ 1302 (1303)
T 3ugj_A 1299 RKQL 1302 (1303)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
| >1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-08 Score=77.49 Aligned_cols=74 Identities=8% Similarity=0.051 Sum_probs=50.0
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC----cchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~----~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++.++|+.+|+++.+++..+...+++. +.|+|+++||...... ...+.+.+++ +++++|++|||.|+|+|+..
T Consensus 52 ~~~~al~~lG~~~~~v~~~~d~~~~l~--~ad~I~lpGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~~~l~~~ 129 (229)
T 1fy2_A 52 KTAEVLAPLGVNVTGIHRVADPLAAIE--KAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPT 129 (229)
T ss_dssp HHHHHHGGGTCEEEETTSSSCHHHHHH--HCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSSB
T ss_pred HHHHHHHHCCCEEEEEeccccHHHHHh--cCCEEEECCCcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHHHHhhccc
Confidence 467889999998888764222235666 7899999996332110 0112334443 46789999999999999985
Q ss_pred h
Q 029484 77 F 77 (192)
Q Consensus 77 ~ 77 (192)
.
T Consensus 130 ~ 130 (229)
T 1fy2_A 130 I 130 (229)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.6e-08 Score=74.48 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=49.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCH----HHHhccCCCeEEECCCCCCCCCcch------hHHHHHH-hCCCCCEEeeeHhH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTV----EELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGL 70 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~----~~~~~~~~dglii~GG~~~~~~~~~------~~~~~~~-~~~~~PilGIC~G~ 70 (192)
++.++++.+|+++++++....+. +.+. +.|+|+++||.. ..... +.+.+++ +++++|++|||.|+
T Consensus 48 s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~--~ad~I~l~GG~~--~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa 123 (206)
T 3l4e_A 48 AGKKALESLGLLVEELDIATESLGEITTKLR--KNDFIYVTGGNT--FFLLQELKRTGADKLILEEIAAGKLYIGESAGA 123 (206)
T ss_dssp HHHHHHHHTTCEEEECCTTTSCHHHHHHHHH--HSSEEEECCSCH--HHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHH
T ss_pred HHHHHHHHcCCeEEEEEecCCChHHHHHHHH--hCCEEEECCCCH--HHHHHHHHHCChHHHHHHHHHcCCeEEEECHHH
Confidence 46788999999999886443334 2344 789999988632 22111 2333443 56799999999999
Q ss_pred HHHHHH
Q 029484 71 QCIGEA 76 (192)
Q Consensus 71 Q~l~~~ 76 (192)
|+++..
T Consensus 124 ~~l~~~ 129 (206)
T 3l4e_A 124 VITSPN 129 (206)
T ss_dssp HTTSSB
T ss_pred HHhccc
Confidence 999874
|
| >4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-06 Score=64.17 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=52.8
Q ss_pred HHHHHhCCCeEEEEeCC--------------CCCHHHHhccCCCeEEECCCCCCCC--CcchhHHHHHH-hCCCCCEEee
Q 029484 4 LKYMGELGYHFEVYRND--------------ELTVEELKRKNPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPLFGV 66 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~--------------~~~~~~~~~~~~dglii~GG~~~~~--~~~~~~~~~~~-~~~~~PilGI 66 (192)
.+.|+++|+++.++... +...+++...+||+|+++||++... +...+.+.+++ .++++||.+|
T Consensus 28 ~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~iaaI 107 (177)
T 4hcj_A 28 KKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVAGI 107 (177)
T ss_dssp HHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEEEe
Confidence 46788999999888653 1234444445899999999976432 23345555555 5688999999
Q ss_pred eHhHHHHHHH
Q 029484 67 CMGLQCIGEA 76 (192)
Q Consensus 67 C~G~Q~l~~~ 76 (192)
|.|-++|+.+
T Consensus 108 C~g~~~La~a 117 (177)
T 4hcj_A 108 GSGVVIMANA 117 (177)
T ss_dssp TTHHHHHHHT
T ss_pred cccHHHHHHC
Confidence 9999999986
|
| >1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.8e-06 Score=64.81 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=51.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCC----------------HHHHhccCCCeEEECCCCCCC--CCcchhHHHHHH-hCCCCCE
Q 029484 3 FLKYMGELGYHFEVYRNDELT----------------VEELKRKNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPL 63 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~----------------~~~~~~~~~dglii~GG~~~~--~~~~~~~~~~~~-~~~~~Pi 63 (192)
..+.|+.+|+++.++.....+ .+++...++|+|||+||.+.. .....+.+.+++ .++++||
T Consensus 42 ~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~gk~i 121 (193)
T 1oi4_A 42 PADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPV 121 (193)
T ss_dssp HHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcCHHHhhhCHHHHHHHHHHHHcCCEE
Confidence 467889999999988764321 112122368999999995421 122334555554 4688999
Q ss_pred EeeeHhHHHHHHH
Q 029484 64 FGVCMGLQCIGEA 76 (192)
Q Consensus 64 lGIC~G~Q~l~~~ 76 (192)
.|||.|.++|+.+
T Consensus 122 ~aIC~G~~lLa~a 134 (193)
T 1oi4_A 122 FAICHGPQLLISA 134 (193)
T ss_dssp EEETTTHHHHHHH
T ss_pred EEECHHHHHHHHC
Confidence 9999999999997
|
| >1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A | Back alignment and structure |
|---|
Probab=98.02 E-value=4.8e-06 Score=64.27 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=52.1
Q ss_pred HHHHHhCCCeEEEEeCCCCC--------------------------------HHHHhccCCCeEEECCCCCC---CCC--
Q 029484 4 LKYMGELGYHFEVYRNDELT--------------------------------VEELKRKNPRGVLISPGPGA---PQD-- 46 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~--------------------------------~~~~~~~~~dglii~GG~~~---~~~-- 46 (192)
.+.|+.+|+++.++..+..+ .+++...+||+|||+||.+. ..+
T Consensus 31 ~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~~~~~~D~livpGG~~~~~~~~~~~ 110 (232)
T 1vhq_A 31 LLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFA 110 (232)
T ss_dssp HHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHHHTSBCHH
T ss_pred HHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHcCcccCCEEEECCCcchHHHHhhhh
Confidence 56788999999988754211 12222236999999999764 222
Q ss_pred --------cchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhC
Q 029484 47 --------SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 47 --------~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~g 78 (192)
...+.+.+++ .++++||.+||.|-++|+.++.
T Consensus 111 ~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~ 151 (232)
T 1vhq_A 111 SLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD 151 (232)
T ss_dssp HHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred ccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHhc
Confidence 2345555655 4689999999999999999843
|
| >3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A | Back alignment and structure |
|---|
Probab=98.00 E-value=4.2e-06 Score=61.14 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=51.1
Q ss_pred HHHHHHhCCCeEEEEeCCCC--------------CHHHHhccCCCeEEECCCCCCC--CCcchhHHHHHH-hCCCCCEEe
Q 029484 3 FLKYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFG 65 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dglii~GG~~~~--~~~~~~~~~~~~-~~~~~PilG 65 (192)
..+.|+.+|+++.++..+.. +.+++...+||.||++||.+.. .....+.+.+++ .++++||.+
T Consensus 21 ~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~l~~~l~~~~~~~k~i~a 100 (168)
T 3l18_A 21 PLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVAS 100 (168)
T ss_dssp HHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHHHhccCHHHHHHHHHHHHCCCEEEE
Confidence 45778889999988865321 1233322369999999997531 122334555554 568899999
Q ss_pred eeHhHHHHHHH
Q 029484 66 VCMGLQCIGEA 76 (192)
Q Consensus 66 IC~G~Q~l~~~ 76 (192)
||.|.++|+.+
T Consensus 101 iC~G~~~La~a 111 (168)
T 3l18_A 101 ICHGPQILISA 111 (168)
T ss_dssp ETTTHHHHHHT
T ss_pred ECHhHHHHHHC
Confidence 99999999986
|
| >3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=97.81 E-value=2e-05 Score=61.24 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=51.2
Q ss_pred HHHHHhCCCeEEEEeCCCC--------------------------------CHHHHhccCCCeEEECCCCCCC-------
Q 029484 4 LKYMGELGYHFEVYRNDEL--------------------------------TVEELKRKNPRGVLISPGPGAP------- 44 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~--------------------------------~~~~~~~~~~dglii~GG~~~~------- 44 (192)
.+.|+.+|+++.++..+.. +.+++...+||+|||+||.+..
T Consensus 48 ~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv~~~~~D~livPGG~~~~~~L~~~~ 127 (242)
T 3l3b_A 48 MLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLF 127 (242)
T ss_dssp HHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGCCGGGCSEEEECCCHHHHHHHBSTT
T ss_pred HHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHCCcccCCEEEEcCCcchhhhhhhhh
Confidence 5678899999998865321 0112222369999999997531
Q ss_pred -------CCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 45 -------QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 45 -------~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
.....+.+.+++ .++++||.+||.|..+|+.+-
T Consensus 128 ~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 128 DEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp SCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 112345555655 468899999999999999985
|
| >2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... | Back alignment and structure |
|---|
Probab=97.79 E-value=1.8e-05 Score=59.38 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=52.0
Q ss_pred HHHHHHhCCCeEEEEeCCCC---------------CHHHH-hccCCCeEEECCCCCCCC---CcchhHHHHHH-hCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDEL---------------TVEEL-KRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVP 62 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~---------------~~~~~-~~~~~dglii~GG~~~~~---~~~~~~~~~~~-~~~~~P 62 (192)
..+.|+.+|+++.++..+.. +.+++ ...+||.||++||.+... ....+.+.+++ .++++|
T Consensus 22 ~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~l~~~~~~~~~l~~~~~~gk~ 101 (197)
T 2rk3_A 22 PVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGL 101 (197)
T ss_dssp HHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHHhhhCHHHHHHHHHHHHcCCE
Confidence 45778899999988875321 23444 334899999999964321 12334455554 468899
Q ss_pred EEeeeHhHHHHHHH
Q 029484 63 LFGVCMGLQCIGEA 76 (192)
Q Consensus 63 ilGIC~G~Q~l~~~ 76 (192)
|.+||.|.++|+.+
T Consensus 102 i~aiC~G~~~La~a 115 (197)
T 2rk3_A 102 IATICAGPTALLAH 115 (197)
T ss_dssp EEEETTTHHHHHHT
T ss_pred EEEECHHHHHHHHC
Confidence 99999999999986
|
| >2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=97.77 E-value=1.2e-05 Score=60.82 Aligned_cols=74 Identities=9% Similarity=0.064 Sum_probs=51.7
Q ss_pred HHHHHHhCCCeEEEEeCCCC-----------------CHHHHhccCCCeEEECCCCCCCCC---cchhHHHHHH-hCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGAPQD---SGISLQTVLE-LGPTV 61 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~-----------------~~~~~~~~~~dglii~GG~~~~~~---~~~~~~~~~~-~~~~~ 61 (192)
..+.|+.+|+++.++..+.. +.+++...+||.|||+||.+.+.+ ...+.+.+++ .++++
T Consensus 21 ~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk 100 (205)
T 2ab0_A 21 TIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGR 100 (205)
T ss_dssp HHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHHhccCHHHHHHHHHHHHcCC
Confidence 35678899999998865421 234443347999999999643321 2334455554 46889
Q ss_pred CEEeeeHhH-HHHHHH
Q 029484 62 PLFGVCMGL-QCIGEA 76 (192)
Q Consensus 62 PilGIC~G~-Q~l~~~ 76 (192)
||.+||.|. ++|+.+
T Consensus 101 ~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 101 IVAAICAAPATVLVPH 116 (205)
T ss_dssp EEEEETHHHHHHTTTT
T ss_pred EEEEECHhHHHHHHHC
Confidence 999999999 999875
|
| >2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.73 E-value=2.2e-05 Score=58.37 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=49.6
Q ss_pred HHHHHHhCCCeEEEEeCCCC-------------------CHHHHhccCCCeEEECCCCCCC---CCcchhHHHHHH-hCC
Q 029484 3 FLKYMGELGYHFEVYRNDEL-------------------TVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLE-LGP 59 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~-------------------~~~~~~~~~~dglii~GG~~~~---~~~~~~~~~~~~-~~~ 59 (192)
..+.|+.+|+++.++..+.. +.+++...+||.|||+||.+.. .....+.+.+++ ..+
T Consensus 28 ~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~l~~~l~~~~~~ 107 (190)
T 2vrn_A 28 PRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDA 107 (190)
T ss_dssp HHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCchhHHHHhhCHHHHHHHHHHHHc
Confidence 35678888998888765321 1222222379999999997433 223345555655 568
Q ss_pred CCCEEeeeHhHHHHHHH
Q 029484 60 TVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 60 ~~PilGIC~G~Q~l~~~ 76 (192)
++||.+||.|.++|+.+
T Consensus 108 gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 108 GKPIAAICHGPWSLSET 124 (190)
T ss_dssp TCCEEEC-CTTHHHHHT
T ss_pred CCEEEEECHhHHHHHhC
Confidence 89999999999999996
|
| >3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0001 Score=64.81 Aligned_cols=75 Identities=12% Similarity=0.079 Sum_probs=54.1
Q ss_pred cHHHHHHhCCCeEEEEeCCC-----CCHHHHhccCCCeEEECCCCCCC----------CCcchhHHHHHH-hCCCCCEEe
Q 029484 2 TFLKYMGELGYHFEVYRNDE-----LTVEELKRKNPRGVLISPGPGAP----------QDSGISLQTVLE-LGPTVPLFG 65 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~-----~~~~~~~~~~~dglii~GG~~~~----------~~~~~~~~~~~~-~~~~~PilG 65 (192)
.+.++|+++|+.+.++.... ...++.....||+|||+||.... ......+..+++ +..+|||-+
T Consensus 556 ~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAA 635 (688)
T 3ej6_A 556 ALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAA 635 (688)
T ss_dssp HHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhccCHHHHHHHHHHHHcCCEEEE
Confidence 35788999999999997532 12333333479999999996541 222345555554 678999999
Q ss_pred eeHhHHHHHHH
Q 029484 66 VCMGLQCIGEA 76 (192)
Q Consensus 66 IC~G~Q~l~~~ 76 (192)
||-|-++|..+
T Consensus 636 Ichgp~lL~~A 646 (688)
T 3ej6_A 636 VGSAKKALQSI 646 (688)
T ss_dssp EGGGHHHHHHT
T ss_pred eCccHHHHHHc
Confidence 99999999986
|
| >4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.62 E-value=4e-05 Score=57.08 Aligned_cols=74 Identities=9% Similarity=0.111 Sum_probs=51.3
Q ss_pred HHHHHHhCCCeEEEEeCCC-CC--------------HHHHhccCCCeEEECCCCCCC---CCcchhHHHHHH-hCCCCCE
Q 029484 3 FLKYMGELGYHFEVYRNDE-LT--------------VEELKRKNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPL 63 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~-~~--------------~~~~~~~~~dglii~GG~~~~---~~~~~~~~~~~~-~~~~~Pi 63 (192)
..+.|+.+|+++.++..+. .+ .+++...+||.||++||.... .....+.+.+++ .++++||
T Consensus 24 ~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~k~i 103 (190)
T 4e08_A 24 AADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLI 103 (190)
T ss_dssp HHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHhhhCHHHHHHHHHHHHCCCEE
Confidence 4578899999999987643 11 233333369999999984322 122334455554 4688999
Q ss_pred EeeeHhHHHHHHH
Q 029484 64 FGVCMGLQCIGEA 76 (192)
Q Consensus 64 lGIC~G~Q~l~~~ 76 (192)
.+||.|.++|+.+
T Consensus 104 ~aiC~G~~~La~a 116 (190)
T 4e08_A 104 AAICAAPTVLAKH 116 (190)
T ss_dssp EEETTTHHHHHHT
T ss_pred EEECHHHHHHHHC
Confidence 9999999999985
|
| >3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00014 Score=54.99 Aligned_cols=73 Identities=11% Similarity=0.187 Sum_probs=49.4
Q ss_pred HHHHHHhC-CCeEEEEeCCCC-------------CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeee
Q 029484 3 FLKYMGEL-GYHFEVYRNDEL-------------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~-g~~~~v~~~~~~-------------~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC 67 (192)
..+.|+.. |+++.++..+.. +.+++ ..++|.||++||.+.......+.+.+++ .++++||.+||
T Consensus 22 ~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~~~~~~~~~l~~~l~~~~~~gk~iaaiC 100 (206)
T 3f5d_A 22 LASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLE-PANFNLLVMIGGDSWSNDNKKLLHFVKTAFQKNIPIAAIC 100 (206)
T ss_dssp HHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSS-CSCCSEEEECCBSCCCCCCHHHHHHHHHHHHTTCCEEEET
T ss_pred HHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhC-CcCCCEEEEcCCCChhhcCHHHHHHHHHHHHcCCEEEEEC
Confidence 35566666 777777754311 12222 1379999999998654433345566665 46899999999
Q ss_pred HhHHHHHHH
Q 029484 68 MGLQCIGEA 76 (192)
Q Consensus 68 ~G~Q~l~~~ 76 (192)
.|..+|+.+
T Consensus 101 ~G~~~La~a 109 (206)
T 3f5d_A 101 GAVDFLAKN 109 (206)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999999986
|
| >1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=97.55 E-value=5.9e-05 Score=57.55 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=51.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH---------------------------HHHhccCCCeEEECCCCCCC---CCcchhHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTV---------------------------EELKRKNPRGVLISPGPGAP---QDSGISLQ 52 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~---------------------------~~~~~~~~dglii~GG~~~~---~~~~~~~~ 52 (192)
..+.|+.+|+++.++..+..+. +++...+||+|||+||.+.. .....+.+
T Consensus 34 p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~ 113 (224)
T 1u9c_A 34 PYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQY 113 (224)
T ss_dssp HHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHH
T ss_pred HHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHHH
Confidence 3567888999999887542210 11112269999999997753 23344556
Q ss_pred HHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 53 TVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 53 ~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.+++ .++++||.+||.|-++|+.+
T Consensus 114 ~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 114 VLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp HHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHHCCCEEEEEChHHHHHHHc
Confidence 6665 46889999999999999876
|
| >3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.55 E-value=5.1e-05 Score=55.69 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=44.7
Q ss_pred hCCCeEEEEeCCC---------------CCHHHH--hccCCCeEEECCC--C-CCCC-----CcchhHHHHHH-hCCCCC
Q 029484 9 ELGYHFEVYRNDE---------------LTVEEL--KRKNPRGVLISPG--P-GAPQ-----DSGISLQTVLE-LGPTVP 62 (192)
Q Consensus 9 ~~g~~~~v~~~~~---------------~~~~~~--~~~~~dglii~GG--~-~~~~-----~~~~~~~~~~~-~~~~~P 62 (192)
+.|+++.++..+. ...+++ ...+||.||++|| . +... ....+.+.+++ .++++|
T Consensus 27 ~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~ 106 (175)
T 3cne_A 27 ENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKM 106 (175)
T ss_dssp HTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCE
T ss_pred eCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCE
Confidence 5677777776531 122343 2237999999999 5 3321 12234455554 468899
Q ss_pred EEeeeHhHHHHHHH
Q 029484 63 LFGVCMGLQCIGEA 76 (192)
Q Consensus 63 ilGIC~G~Q~l~~~ 76 (192)
|.+||.|.++|+.+
T Consensus 107 i~aiC~G~~~La~a 120 (175)
T 3cne_A 107 MIGHCAGAMMFDFT 120 (175)
T ss_dssp EEEETTHHHHHHHT
T ss_pred EEEECHHHHHHHHC
Confidence 99999999999986
|
| >2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00012 Score=54.43 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=50.0
Q ss_pred HHHHHHh-CCCeEEEEeCCCC--------------CHHHHhccCCCeEEECCCCCCC-CCcchhHHHHHH-hCCCCCEEe
Q 029484 3 FLKYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-QDSGISLQTVLE-LGPTVPLFG 65 (192)
Q Consensus 3 l~~~l~~-~g~~~~v~~~~~~--------------~~~~~~~~~~dglii~GG~~~~-~~~~~~~~~~~~-~~~~~PilG 65 (192)
..+.|+. .|+++.++..+.. +.+++...++|.|||+||.+.. .....+.+.+++ ..+++||.+
T Consensus 20 ~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~l~~~l~~~~~~~k~i~a 99 (188)
T 2fex_A 20 LAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAG 99 (188)
T ss_dssp HHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCcccccccHHHHHHHHHHHHCCCEEEE
Confidence 3466777 8888888865321 1222222269999999996532 223345555554 457899999
Q ss_pred eeHhHHHHHHH
Q 029484 66 VCMGLQCIGEA 76 (192)
Q Consensus 66 IC~G~Q~l~~~ 76 (192)
||.|.++|+.+
T Consensus 100 iC~G~~~La~a 110 (188)
T 2fex_A 100 ICAAASALGGT 110 (188)
T ss_dssp ETHHHHHHHHT
T ss_pred ECHHHHHHHHC
Confidence 99999999986
|
| >3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00015 Score=60.13 Aligned_cols=74 Identities=18% Similarity=0.305 Sum_probs=51.4
Q ss_pred HHHHHHhCCCeEEEEeCCC------------------------------CCHHHHhccCCCeEEECCCCCCC--CCcchh
Q 029484 3 FLKYMGELGYHFEVYRNDE------------------------------LTVEELKRKNPRGVLISPGPGAP--QDSGIS 50 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~------------------------------~~~~~~~~~~~dglii~GG~~~~--~~~~~~ 50 (192)
..+.|+.+|+++.++..+. .+.+++...+||.||++||.+.. .....+
T Consensus 224 ~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~livpGg~~~~~~~~~~~~ 303 (396)
T 3uk7_A 224 PFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGRAPEYLALNEHV 303 (396)
T ss_dssp HHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGGCSEEEECCBSHHHHHTTCHHH
T ss_pred HHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCcccCCEEEECCCcchhhhccCHHH
Confidence 4567888899998885432 12233322379999999997522 223345
Q ss_pred HHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 51 LQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 51 ~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.+.+++ .++++||.+||.|.++|+.+
T Consensus 304 ~~~l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 304 LNIVKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp HHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence 555554 56899999999999999986
|
| >3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0 | Back alignment and structure |
|---|
Probab=97.34 E-value=7.9e-05 Score=58.08 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=34.7
Q ss_pred CCCeEEECCCCCCC---CCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~---~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+||+|+|+||.+.. .....+.+.+++ .++++||.+||.|-.+|+.+
T Consensus 105 ~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 105 DYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred hCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 69999999998652 122334555554 56899999999999999876
|
| >3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00025 Score=58.77 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=51.4
Q ss_pred HHHHHHhCCCeEEEEeCCCC------------------------------CHHHHhccCCCeEEECCCCCCC--CCcchh
Q 029484 3 FLKYMGELGYHFEVYRNDEL------------------------------TVEELKRKNPRGVLISPGPGAP--QDSGIS 50 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~------------------------------~~~~~~~~~~dglii~GG~~~~--~~~~~~ 50 (192)
..+.|+.+|+++.++..... +.+++...+||.|+++||.+.. .....+
T Consensus 31 ~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~~~~ 110 (396)
T 3uk7_A 31 PFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASV 110 (396)
T ss_dssp HHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGCSEEEECCBSHHHHHTTCHHH
T ss_pred HHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccCCEEEECCCcchhhcccCHHH
Confidence 35678999999988865421 1222222379999999996532 122344
Q ss_pred HHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 51 LQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 51 ~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.+.+++ ..+++||.+||.|.++|+.+
T Consensus 111 ~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 111 VELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp HHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred HHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 555554 56899999999999999986
|
| >2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00027 Score=62.25 Aligned_cols=75 Identities=11% Similarity=0.126 Sum_probs=53.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCC-----HHHHhccCCCeEEECCCCCC-------------------CCCcchhHHHHHH-
Q 029484 2 TFLKYMGELGYHFEVYRNDELT-----VEELKRKNPRGVLISPGPGA-------------------PQDSGISLQTVLE- 56 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~-----~~~~~~~~~dglii~GG~~~-------------------~~~~~~~~~~~~~- 56 (192)
.+.+.|+++|++++++.....+ .++....+||+|||+||... ....+..++.+++
T Consensus 549 ~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~ 628 (688)
T 2iuf_A 549 KLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDA 628 (688)
T ss_dssp HHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHH
Confidence 4678899999999999753211 12223337999999999533 1233445566655
Q ss_pred hCCCCCEEeeeHhHHHHHHH
Q 029484 57 LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 57 ~~~~~PilGIC~G~Q~l~~~ 76 (192)
+..+|||-+||.|-++|..+
T Consensus 629 ~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 629 FRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp HHHTCEEEEEGGGHHHHHHT
T ss_pred HHcCCEEEEECchHHHHHHc
Confidence 56789999999999998875
|
| >3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00011 Score=57.14 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=34.7
Q ss_pred CCCeEEECCCCCCC---CCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~---~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+||+|+|+||.+.. .....+.+.+++ .++++||.+||.|-.+|+.+
T Consensus 98 ~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 98 DYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 69999999997642 222334455554 56899999999999999876
|
| >3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00068 Score=51.33 Aligned_cols=68 Identities=7% Similarity=0.083 Sum_probs=46.0
Q ss_pred hCCCeEEEEeCCCCC--------------HHHHhccCCCeEEECCCCCCCCC-cchhHHHHHH-hCCCCCEEeeeHhHHH
Q 029484 9 ELGYHFEVYRNDELT--------------VEELKRKNPRGVLISPGPGAPQD-SGISLQTVLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 9 ~~g~~~~v~~~~~~~--------------~~~~~~~~~dglii~GG~~~~~~-~~~~~~~~~~-~~~~~PilGIC~G~Q~ 72 (192)
..|+++.++..+..+ .+++...+||.|||+||.+.... ...+.+.+++ ..++++|.+||.|..+
T Consensus 38 ~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~ 117 (212)
T 3efe_A 38 LAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTTWSEEIHQPILERIGQALKIGTIVAAICGATDA 117 (212)
T ss_dssp CCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCSCTTSGGGHHHHHHHHHHHHHTCEEEEETHHHHH
T ss_pred CCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCCccccccCHHHHHHHHHHHHCCCEEEEEcHHHHH
Confidence 567888887653211 23333337999999999764321 2234455554 4678999999999999
Q ss_pred HHHH
Q 029484 73 IGEA 76 (192)
Q Consensus 73 l~~~ 76 (192)
|+.+
T Consensus 118 La~a 121 (212)
T 3efe_A 118 LANM 121 (212)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9986
|
| >1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00011 Score=57.04 Aligned_cols=46 Identities=15% Similarity=0.087 Sum_probs=34.7
Q ss_pred CCCeEEECCCCCCCC---CcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~---~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+||+|||+||.+... ....+.+.+++ .++++||.+||.|-.+|+.+
T Consensus 98 ~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 98 DYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 689999999977432 22345555655 46899999999999988876
|
| >3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00037 Score=57.25 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=50.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCC----------------HHHHhccCCCeEEECCCCCCC--CCcchhHHHHHH-hCCCCCE
Q 029484 3 FLKYMGELGYHFEVYRNDELT----------------VEELKRKNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPL 63 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~----------------~~~~~~~~~dglii~GG~~~~--~~~~~~~~~~~~-~~~~~Pi 63 (192)
..+.|+.+|+++.++..+..+ .+++...+||.|||+||.+.. .....+.+.+++ ..+++||
T Consensus 29 p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g~~~l~~~~~l~~~Lr~~~~~gk~I 108 (365)
T 3fse_A 29 PCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPDKMRRNPNTVRFVQEAMEQGKLV 108 (365)
T ss_dssp HHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTHHHHHTTCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcchhhccCCHHHHHHHHHHHHCCCEE
Confidence 457788899998888654221 111222258999999997532 223345555654 5688999
Q ss_pred EeeeHhHHHHHHH
Q 029484 64 FGVCMGLQCIGEA 76 (192)
Q Consensus 64 lGIC~G~Q~l~~~ 76 (192)
.+||.|..+|+.+
T Consensus 109 aAIC~G~~lLA~A 121 (365)
T 3fse_A 109 AAVCHGPQVLIEG 121 (365)
T ss_dssp EEETTTHHHHHHT
T ss_pred EEECHHHHHHHHc
Confidence 9999999999986
|
| >3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00012 Score=55.41 Aligned_cols=74 Identities=12% Similarity=0.177 Sum_probs=50.7
Q ss_pred HHHHHHhCCCeEEEEeCCC-CC--------------HHHHhccCCCeEEECCCCCCC---CCcchhHHHHHH-hCCCCCE
Q 029484 3 FLKYMGELGYHFEVYRNDE-LT--------------VEELKRKNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPL 63 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~-~~--------------~~~~~~~~~dglii~GG~~~~---~~~~~~~~~~~~-~~~~~Pi 63 (192)
..+.|+.+|+++.++..+. .+ .+++...+||.|||+||.+.+ .....+.+.+++ ..+++||
T Consensus 28 ~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i 107 (208)
T 3ot1_A 28 IVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLV 107 (208)
T ss_dssp HHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHHHhhCHHHHHHHHHHHHcCCEE
Confidence 4567888999998887642 11 223222379999999996432 123345555554 5689999
Q ss_pred EeeeHhH-HHHHHH
Q 029484 64 FGVCMGL-QCIGEA 76 (192)
Q Consensus 64 lGIC~G~-Q~l~~~ 76 (192)
.+||.|. .+|+.+
T Consensus 108 ~aiC~G~a~~La~a 121 (208)
T 3ot1_A 108 AAICATPALVFAKQ 121 (208)
T ss_dssp EEETTHHHHTTTTT
T ss_pred EEEChhHHHHHHHC
Confidence 9999998 888874
|
| >3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ... | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00031 Score=62.30 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=52.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCC--------------CHHHHhccCCCeEEECCCCCCC--CCcchhHHHHHH-hCCCCCEE
Q 029484 2 TFLKYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLF 64 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dglii~GG~~~~--~~~~~~~~~~~~-~~~~~Pil 64 (192)
.+.+.|+.+|+++.++..... ..++....+||+|||+|| +.. ......+..+++ +..++||-
T Consensus 618 ~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~~Lr~d~~vl~~Vre~~~~gKpIA 696 (753)
T 3ttv_A 618 AILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIADIADNGDANYYLMEAYKHLKPIA 696 (753)
T ss_dssp HHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGGGTTTCHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChHHhhhCHHHHHHHHHHHhcCCeEE
Confidence 467889999999999865321 122222236999999999 432 233445566665 56899999
Q ss_pred eeeHhHHHHHHH
Q 029484 65 GVCMGLQCIGEA 76 (192)
Q Consensus 65 GIC~G~Q~l~~~ 76 (192)
+||-|-++|+.+
T Consensus 697 AIC~Gp~lLa~A 708 (753)
T 3ttv_A 697 LAGDARKFKATI 708 (753)
T ss_dssp EEGGGGGGGGGG
T ss_pred EECchHHHHHHc
Confidence 999999999887
|
| >3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00056 Score=51.44 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=36.5
Q ss_pred cCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 30 KNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 30 ~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.++|.|||+||.+.......+.+.+++ ..++++|.+||.|..+|+.+
T Consensus 70 ~~~D~livpGG~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 70 KELDLLVVCGGLRTPLKYPELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp TTCSEEEEECCTTCCSCCTTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred CCCCEEEEeCCCchhhccHHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 379999999997654333445555654 45789999999999999987
|
| >1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00082 Score=53.52 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=35.7
Q ss_pred cCCCeEEECCCCCCCCC---cchhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 30 KNPRGVLISPGPGAPQD---SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 30 ~~~dglii~GG~~~~~~---~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
.+||+|||+||.+...+ ...+.+.+++ .+++++|.+||.|-.+|+.+-
T Consensus 144 ~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~ 195 (291)
T 1n57_A 144 SEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR 195 (291)
T ss_dssp CSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred ccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence 37999999999765422 2335555655 468899999999999888763
|
| >3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00079 Score=50.90 Aligned_cols=46 Identities=9% Similarity=-0.004 Sum_probs=35.2
Q ss_pred CCCeEEECCCCCCCC----CcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~~----~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|.|||+||.+... ....+++.+++ ..++++|.+||-|..+|+.+
T Consensus 74 ~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 74 FTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp CCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred CCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 799999999965322 23445555655 46889999999999999987
|
| >1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0011 Score=58.77 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=51.8
Q ss_pred HHHHHHhCCCeEEEEeCCCC--------------CHHHHhccCCCeEEECCCCCCC---CCcchhHHHHHH-hCCCCCEE
Q 029484 3 FLKYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLF 64 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dglii~GG~~~~---~~~~~~~~~~~~-~~~~~Pil 64 (192)
..+.|+.+|+++.++..... ..+++...+||+|||+||.+.. .....+++.+++ .+.++||.
T Consensus 553 p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~~~~~l~~~Lr~~~~~gK~Ia 632 (715)
T 1sy7_A 553 AYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIG 632 (715)
T ss_dssp HHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHhhhccCHHHHHHHHHHHhCCCEEE
Confidence 45778899999998865321 1122222368999999994322 123345555554 56889999
Q ss_pred eeeHhHHHHHHHhC
Q 029484 65 GVCMGLQCIGEAFG 78 (192)
Q Consensus 65 GIC~G~Q~l~~~~g 78 (192)
+||.|..+|+.++|
T Consensus 633 AIC~G~~lLA~AlG 646 (715)
T 1sy7_A 633 ATGEAVDLVAKAIA 646 (715)
T ss_dssp EETTHHHHHHHHHC
T ss_pred EECHHHHHHHHccC
Confidence 99999999999864
|
| >3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0027 Score=48.77 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=35.9
Q ss_pred CCCeEEECCCCCCC--CCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~--~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++|.|+|+||++.. .....+++.+++ ..++++|.+||-|..+|+.+
T Consensus 65 ~~D~livpGG~g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 65 PLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp CCSEEEECCSTTHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred cCCEEEECCCCChhhhccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 68999999997642 233445566665 57899999999999999986
|
| >3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0043 Score=48.33 Aligned_cols=72 Identities=13% Similarity=0.140 Sum_probs=48.2
Q ss_pred HHHH-HhCCCeEEEEeCCCCC--------------HHHHhccCCCeEEECCCC-CCC--CCcchhHHHHHH-hCCCCCEE
Q 029484 4 LKYM-GELGYHFEVYRNDELT--------------VEELKRKNPRGVLISPGP-GAP--QDSGISLQTVLE-LGPTVPLF 64 (192)
Q Consensus 4 ~~~l-~~~g~~~~v~~~~~~~--------------~~~~~~~~~dglii~GG~-~~~--~~~~~~~~~~~~-~~~~~Pil 64 (192)
.+.| +..|+++.++..+..+ .+++. ..||.|||+||. +.. .....+++.+++ ..++++|.
T Consensus 43 ~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~-~~yD~liVPGG~~g~~~l~~~~~l~~~Lr~~~~~gk~Ia 121 (253)
T 3ewn_A 43 HCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCP-RDLTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYIT 121 (253)
T ss_dssp HHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSC-SSCSEEEECCBSHHHHHHTTCHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcC-CCCCEEEECCCccchhhhccCHHHHHHHHHHHHcCCEEE
Confidence 4556 4568888877653211 12222 157999999997 532 233445566665 57899999
Q ss_pred eeeHhHHHHHHH
Q 029484 65 GVCMGLQCIGEA 76 (192)
Q Consensus 65 GIC~G~Q~l~~~ 76 (192)
+||-|..+|+.+
T Consensus 122 aICtG~~lLa~A 133 (253)
T 3ewn_A 122 SVCSGSLILGAA 133 (253)
T ss_dssp EETTHHHHHHHT
T ss_pred EEChHHHHHHHc
Confidence 999999999986
|
| >4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0055 Score=45.65 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=30.6
Q ss_pred CCCeEEECCCCCCC---CCcchhHHHHHHh-C-CCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAP---QDSGISLQTVLEL-G-PTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~---~~~~~~~~~~~~~-~-~~~PilGIC~G~Q~l~~~ 76 (192)
+||.|||+||.+.. .+...+.+.++++ . .++++-.||.|.. |+.+
T Consensus 73 ~yD~lvvPGG~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~-l~~a 122 (194)
T 4gdh_A 73 QYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTL-TAKT 122 (194)
T ss_dssp HCSEEEECCCHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGH-HHHH
T ss_pred cCCEEEECCCchhHhHhhhCHHHHHHHHHhhhcCCceEEeeccccc-chhh
Confidence 58999999995432 2334455666664 3 4789999999984 4444
|
| >3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0019 Score=48.86 Aligned_cols=46 Identities=13% Similarity=0.259 Sum_probs=34.2
Q ss_pred CCCeEEECCCCCCC--CCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG~~~~--~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
.+|.|||+||.+.. .....+++.+++ ..++++|.+||-|-.+|+.+
T Consensus 65 ~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 65 IEKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp SEEEEEECCSTHHHHHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred CCCEEEECCCcchhhhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 47999999997532 123345555554 45789999999999999986
|
| >3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.003 Score=48.73 Aligned_cols=45 Identities=24% Similarity=0.416 Sum_probs=33.8
Q ss_pred CCCeEEECCC-CCCC--CCcchhHHHHHHhCCCC-CEEeeeHhHHHHHHH
Q 029484 31 NPRGVLISPG-PGAP--QDSGISLQTVLELGPTV-PLFGVCMGLQCIGEA 76 (192)
Q Consensus 31 ~~dglii~GG-~~~~--~~~~~~~~~~~~~~~~~-PilGIC~G~Q~l~~~ 76 (192)
++|.|||+|| ++.. .....+.+.+ ...+++ +|.+||-|-.+|+.+
T Consensus 80 ~~D~liVPGG~~g~~~l~~~~~l~~~L-~~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 80 EQDVVLITSGYRGIPAALQDENFMSAL-KLDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp GCSEEEECCCTTHHHHHHTCHHHHHHC-CCCTTTCEEEEETTHHHHHHHT
T ss_pred CCCEEEEcCCccCHhhhccCHHHHHHH-HhCCCCCEEEEEcHHHHHHHHc
Confidence 7999999999 4432 1233445556 666677 999999999999986
|
| >3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.013 Score=46.64 Aligned_cols=72 Identities=11% Similarity=0.250 Sum_probs=47.1
Q ss_pred HHHHHHhCCC-eEEEEeCCCCC---HH----HHhccCCCeEEECCCCCCCC----CcchhHHHHHH-hCCC-CCEEeeeH
Q 029484 3 FLKYMGELGY-HFEVYRNDELT---VE----ELKRKNPRGVLISPGPGAPQ----DSGISLQTVLE-LGPT-VPLFGVCM 68 (192)
Q Consensus 3 l~~~l~~~g~-~~~v~~~~~~~---~~----~~~~~~~dglii~GG~~~~~----~~~~~~~~~~~-~~~~-~PilGIC~ 68 (192)
+.++++++|+ ++.+++..... .+ .+. +.|+|+++||..... ....+.+.+++ +.++ .|+.|+|.
T Consensus 76 ~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~--~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSA 153 (291)
T 3en0_A 76 YQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVE--QCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSA 153 (291)
T ss_dssp HHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHH--HCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETH
T ss_pred HHHHHHHcCCCeeEEEEecCccccCCHHHHHHHh--cCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCH
Confidence 4567888999 78888663221 11 233 789999999844221 11223444544 5677 99999999
Q ss_pred hHHHHHHH
Q 029484 69 GLQCIGEA 76 (192)
Q Consensus 69 G~Q~l~~~ 76 (192)
|.-+++..
T Consensus 154 GA~i~~~~ 161 (291)
T 3en0_A 154 GAAVMGHH 161 (291)
T ss_dssp HHHTTSSE
T ss_pred HHHhhhHh
Confidence 99988763
|
| >1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6 | Back alignment and structure |
|---|
Probab=93.67 E-value=1.9 Score=33.23 Aligned_cols=173 Identities=12% Similarity=0.025 Sum_probs=87.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCC----HHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhH--HHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL--QCIGE 75 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~----~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~--Q~l~~ 75 (192)
|.+.|++.|++|+++..++.. .+.+. +||.||+.|............+.+++ +.+|..++||=.|. +....
T Consensus 37 i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~--~~DvvV~~~~~~~~~l~~~~~~al~~~V~~GgG~vgiH~a~~~~~y~~ 114 (252)
T 1t0b_A 37 IASYLAEAGFDAATAVLDEPEHGLTDEVLD--RCDVLVWWGHIAHDEVKDEVVERVHRRVLEGMGLIVLHSGHFSKIFKK 114 (252)
T ss_dssp HHHHHHHTTCEEEEEESSSGGGGCCHHHHH--TCSEEEEECSSCGGGSCHHHHHHHHHHHHTTCEEEEEGGGGGSHHHHH
T ss_pred HHHHHhhCCcEEEEEeccCccccCCHhHHh--cCCEEEEecCCCCCcCCHHHHHHHHHHHHcCCCEEEEcccCCcHHHHh
Confidence 467889999999997643221 23344 89999985321111122233444444 67899999996663 44556
Q ss_pred HhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEE-cCCC-----ceEEEe
Q 029484 76 AFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAW-TEDG-----LIMAAR 149 (192)
Q Consensus 76 ~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~-s~~~-----~i~ai~ 149 (192)
.+|+... .++. ..+....+.+ ...++++.++++..+....-..|.... ..+.+...++.. ..++ ++.-.+
T Consensus 115 llGg~f~-~~~~-~~~~~~~v~v-~~~~HPit~gl~~~f~~~dee~Y~~~~-~~p~~~~~vl~~~~~~G~~~~~p~~w~~ 190 (252)
T 1t0b_A 115 LMGTTCN-LKWR-EADEKERLWV-VAPGHPIVEGIGPYIELEQEEMYGEFF-DIPEPDETIFISWFEGGEVFRSGCTFTR 190 (252)
T ss_dssp HHCSCCC-CEEE-EEEEEEEEEE-SCTTSGGGTTCCSEEEEEEEEEEESCC-CSCCCSEEEEEEEETTSCEEEEEEEEEE
T ss_pred hhCCccc-CCCc-cCCceEEEEE-CCCCChhhcCCCCCcEeccceeeeecc-CCCCCCceEEeeeccCCccccEEEEEEE
Confidence 7787632 1110 0122222322 345788999998666554221221110 002223334432 2344 233333
Q ss_pred eCCCCceEEE-ecc-CC-CCCCCchHHHHHHHHHHHH
Q 029484 150 HKKYKHLQGV-QFH-PE-SIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 150 ~~~~~~~~g~-QfH-PE-~~~~~~~~~l~~~f~~~~~ 183 (192)
..++ ++.+ ..| ++ ....++-++++.+=+..+.
T Consensus 191 -g~GR-vfY~~lGH~~~~~~~~p~~~~ll~~gI~WAa 225 (252)
T 1t0b_A 191 -GKGK-IFYFRPGHETYPTYHHPDVLKVIANAVRWAA 225 (252)
T ss_dssp -TTEE-EEEECCCCTTSCGGGCHHHHHHHHHHHHHHC
T ss_pred -CCcc-EEEECCCCCCCcccCCHHHHHHHHHHHHHHc
Confidence 4444 5555 599 65 3223344555555555443
|
| >1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.11 Score=40.91 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=39.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 70 (192)
+.++|++.|+++.+.... ...+. ++|.+|..||.| .+++..+.+...+||+||-.|.
T Consensus 45 l~~~L~~~g~~v~~~~~~---~~~~~--~~DlvIvlGGDG------T~L~aa~~~~~~~PilGIN~G~ 101 (278)
T 1z0s_A 45 IEEALKRLEVEVELFNQP---SEELE--NFDFIVSVGGDG------TILRILQKLKRCPPIFGINTGR 101 (278)
T ss_dssp HHHHHHHTTCEEEEESSC---CGGGG--GSSEEEEEECHH------HHHHHHTTCSSCCCEEEEECSS
T ss_pred HHHHHHHCCCEEEEcccc---ccccC--CCCEEEEECCCH------HHHHHHHHhCCCCcEEEECCCC
Confidence 678999999998876532 12222 789999999954 4455555543229999998873
|
| >2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=89.97 E-value=0.43 Score=37.41 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=39.5
Q ss_pred HHHHHHhCCCeEEEEeCC----------CCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRND----------ELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~----------~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGIC~G~ 70 (192)
+.++|++.|+++.+.... ....++.. .++|.||+.||.| .+++..+.+ ..++|+|||=.|.
T Consensus 26 i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~~GGDG------T~l~a~~~~~~~~~P~lGI~~Gt 97 (292)
T 2an1_A 26 LYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIG-QQADLAVVVGGDG------NMLGAARTLARYDINVIGINRGN 97 (292)
T ss_dssp HHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHH-HHCSEEEECSCHH------HHHHHHHHHTTSSCEEEEBCSSS
T ss_pred HHHHHHHCCCEEEEecchhhhcccccccccchhhcc-cCCCEEEEEcCcH------HHHHHHHHhhcCCCCEEEEECCC
Confidence 678899999998776310 00112222 2689999999954 445555543 4579999997653
|
| >4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae} | Back alignment and structure |
|---|
Probab=89.51 E-value=3.4 Score=32.29 Aligned_cols=174 Identities=9% Similarity=0.050 Sum_probs=89.1
Q ss_pred HHHHHHhCC-CeEEEEeCCC-----CCH-HHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHH---
Q 029484 3 FLKYMGELG-YHFEVYRNDE-----LTV-EELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQ--- 71 (192)
Q Consensus 3 l~~~l~~~g-~~~~v~~~~~-----~~~-~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q--- 71 (192)
|.+.|++.| ++|++..... ... +.| .+||.||+.- .+... .....+.+.+ +++|.+++|+..+.-
T Consensus 25 l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L--~~~D~vV~~~-~~~~l-~~~~~~~l~~yV~~Ggglv~~H~a~~~~~ 100 (281)
T 4e5v_A 25 LKQILENSGRFDVDFVISPEQGKDMSGFVLDF--SPYQLVVLDY-NGDSW-PEETNRRFLEYVQNGGGVVIYHAADNAFS 100 (281)
T ss_dssp HHHHHHHTTSEEEEEEECCCTTSCCTTCCCCC--TTCSEEEECC-CSSCC-CHHHHHHHHHHHHTTCEEEEEGGGGGSCT
T ss_pred HHHHHHhcCCEEEEEEeCCccccchhHHhhhh--hcCCEEEEeC-CCCcC-CHHHHHHHHHHHHcCCCEEEEecccccCC
Confidence 667888888 9999986310 001 122 3899999643 22221 2233444443 678999999987643
Q ss_pred ---HHHHHhC-Cee------------------eec-C--CccccccceeeEE-cccCCCccccCCCCccccc--cccccc
Q 029484 72 ---CIGEAFG-GKI------------------VRS-P--LGVMHGKSSLVYY-DEKGEDGLLAGLSNPFTAG--RYHSLV 123 (192)
Q Consensus 72 ---~l~~~~g-g~v------------------~~~-~--~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~--~~H~~~ 123 (192)
.-...+| |.. ... . ....|+......+ ....++++.++++..+... .+....
T Consensus 101 ~w~~y~~liG~g~f~~r~~~~gp~~~~~~g~~v~~~~~g~~~~Hp~~~~~~v~v~~~~HPit~Gl~~~~~~~~dE~Y~~~ 180 (281)
T 4e5v_A 101 KWPEFNRICALGGWEGRNENSGPYVYWKDGKLVKDSSAGPGGSHGRQHEYVLNGRDKVHPVVKGLPLKWRHAKDELYDRM 180 (281)
T ss_dssp TCHHHHHHHSCBCCTTCSGGGCCEEEEETTEEEEECCSCCSCBCCSCEEEEEEESCSSSTTTTTSCSEEEEEEECCCBSC
T ss_pred CCHHHHHheecccccccccccccceeecccccccccccccccCCCCCceEEEEEcCCCCchhhCCCCcccccccCCcccc
Confidence 2335667 532 110 0 0011232222222 2345789999998754421 222221
Q ss_pred ccccCCCCCCeEEEEEcCC----------CceEEEeeC-CCCceEEEecc-------CCCCCCCchHHHHHHHHHHHHH
Q 029484 124 IEKESFPSDALEVTAWTED----------GLIMAARHK-KYKHLQGVQFH-------PESIITTEGKTIVRNFIKMIVR 184 (192)
Q Consensus 124 v~~~~l~~~~~~~~a~s~~----------~~i~ai~~~-~~~~~~g~QfH-------PE~~~~~~~~~l~~~f~~~~~~ 184 (192)
.. +.++..+|++... .++...... .++-+|....| +|....+.=++++.+=+..+..
T Consensus 181 ~~----p~~~~~VL~t~~~~~~~~~~g~~~Pv~W~~~~g~GRvFyt~lGH~~~~w~~~~~~~~p~f~~ll~~gi~Waa~ 255 (281)
T 4e5v_A 181 RG----PGNIRDILYTAYSDKETNGSGREEPLVFTVDYGNARIFHTMLGHAGATTEDNIAMQCTGFQVLLLRGAEWAAT 255 (281)
T ss_dssp BS----CCCEEEEEEEEECCGGGTCCSSEEEEEEEECSTTCEEEEECCCCCCSSSSSCHHHHBHHHHHHHHHHHHHHHH
T ss_pred cC----CCCCCEEEEEEeccCcCCCCCCcceEEEEEEeCCeeEEEECCCCcccccCCccccCCHHHHHHHHHHHHHHhC
Confidence 11 3356778886532 134444322 23347778888 4443222335555555555543
|
| >2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A* | Back alignment and structure |
|---|
Probab=87.83 E-value=0.38 Score=37.50 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=34.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhC---CCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG---PTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~---~~~PilGIC~G~ 70 (192)
+.++|++.|+++. ..++|.||..||.| .++...+.+. .++|+|||=.|.
T Consensus 20 l~~~l~~~g~~v~-------------~~~~D~vv~lGGDG------T~l~aa~~~~~~~~~~PilGIn~G~ 71 (272)
T 2i2c_A 20 MIAGFGEYDMEYD-------------DVEPEIVISIGGDG------TFLSAFHQYEERLDEIAFIGIHTGH 71 (272)
T ss_dssp HHHHHTTSSCEEC-------------SSSCSEEEEEESHH------HHHHHHHHTGGGTTTCEEEEEESSS
T ss_pred HHHHHHHCCCEeC-------------CCCCCEEEEEcCcH------HHHHHHHHHhhcCCCCCEEEEeCCC
Confidence 5677888888771 12689999999954 4455555542 389999997763
|
| >3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=87.07 E-value=1.7 Score=31.52 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=42.8
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGE 75 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~ 75 (192)
|.++|++.|+++.....-..+.+.+.. .++|.||.+||-|-..++- ..+.+.+ ++ +++.+.---++.|-.
T Consensus 28 l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~D~-T~ea~a~~~~--~~l~~~~e~~~~i~~ 104 (172)
T 3kbq_A 28 IGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFDDM-TVEGFAKCIG--QDLRIDEDALAMIKK 104 (172)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTTCC-HHHHHHHHHT--CCCEECHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCcccc-hHHHHHHHcC--CCeeeCHHHHHHHHH
Confidence 678899999988655322223333321 1589999999966544433 2233332 33 555555555666666
Q ss_pred HhC
Q 029484 76 AFG 78 (192)
Q Consensus 76 ~~g 78 (192)
.++
T Consensus 105 ~~~ 107 (172)
T 3kbq_A 105 KYG 107 (172)
T ss_dssp HHC
T ss_pred HHc
Confidence 665
|
| >2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1 | Back alignment and structure |
|---|
Probab=87.07 E-value=3.8 Score=27.45 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=26.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~G 39 (192)
+.+.+++.|.+++++...+.+.+++. ++|+||+..
T Consensus 20 i~~~l~~~g~~v~~~~~~~~~~~~l~--~~d~vi~g~ 54 (137)
T 2fz5_A 20 IEAAVKAAGADVESVRFEDTNVDDVA--SKDVILLGC 54 (137)
T ss_dssp HHHHHHHTTCCEEEEETTSCCHHHHH--TCSEEEEEC
T ss_pred HHHHHHhCCCeEEEEEcccCCHHHHh--cCCEEEEEc
Confidence 45667778999999988766666666 788887754
|
| >1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A | Back alignment and structure |
|---|
Probab=86.98 E-value=0.46 Score=37.69 Aligned_cols=61 Identities=21% Similarity=0.354 Sum_probs=35.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-----------------HH-----HHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CC
Q 029484 3 FLKYMGELGYHFEVYRNDELT-----------------VE-----ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GP 59 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-----------------~~-----~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~ 59 (192)
+.++|++.|.++.+....... .. +....++|.+|+.||.| .++...+.+ ..
T Consensus 25 l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~GGDG------T~l~a~~~~~~~ 98 (307)
T 1u0t_A 25 VEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGDG------TFLRAAELARNA 98 (307)
T ss_dssp HHHHHHTTTCEEEEEC-----------------------------------CCCEEEEECHH------HHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEeCCH------HHHHHHHHhccC
Confidence 678899999998776432110 00 01122689999999955 344444432 24
Q ss_pred CCCEEeeeHh
Q 029484 60 TVPLFGVCMG 69 (192)
Q Consensus 60 ~~PilGIC~G 69 (192)
++|+|||-.|
T Consensus 99 ~~pvlgi~~G 108 (307)
T 1u0t_A 99 SIPVLGVNLG 108 (307)
T ss_dssp TCCEEEEECS
T ss_pred CCCEEEEeCC
Confidence 6899999776
|
| >2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=86.34 E-value=0.15 Score=36.40 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=26.1
Q ss_pred CCCeEEECCCCCCCCC---cchhHHHHHHh-CCCCCEEeeeH
Q 029484 31 NPRGVLISPGPGAPQD---SGISLQTVLEL-GPTVPLFGVCM 68 (192)
Q Consensus 31 ~~dglii~GG~~~~~~---~~~~~~~~~~~-~~~~PilGIC~ 68 (192)
++|.|||.||-..|.- .....+.+.++ +....++|||+
T Consensus 84 ~~D~vVllGGLAMPk~~v~~e~v~~li~ki~~~~~kiiGvCF 125 (157)
T 2r47_A 84 NVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCY 125 (157)
T ss_dssp CEEEEEEEGGGGSTTTSCCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEEeccccCCCCCCCHHHHHHHHHHhhcCCCCEEEEEh
Confidence 7899999999776643 33444445554 34566999995
|
| >5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A* | Back alignment and structure |
|---|
Probab=82.70 E-value=2.6 Score=28.59 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=26.4
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~G 39 (192)
+.+.+++.|+++++++..+.+..++. ++|+||+..
T Consensus 19 ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~iiig~ 53 (138)
T 5nul_A 19 IAKGIIESGKDVNTINVSDVNIDELL--NEDILILGC 53 (138)
T ss_dssp HHHHHHHTTCCCEEEEGGGCCHHHHT--TCSEEEEEE
T ss_pred HHHHHHHCCCeEEEEEhhhCCHHHHh--hCCEEEEEc
Confidence 56677888999999987666666666 788777753
|
| >3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.45 E-value=1.6 Score=35.53 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=40.4
Q ss_pred cHHHHHHhCCCeEEEEeCCCC----------------------CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-C
Q 029484 2 TFLKYMGELGYHFEVYRNDEL----------------------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-G 58 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~----------------------~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~ 58 (192)
.|++||.+.|++|.+-..... +.+++ ..++|.+|..||.| .++...+.+ .
T Consensus 58 ~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlvI~lGGDG------T~L~aa~~~~~ 130 (365)
T 3pfn_A 58 ELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDI-SNQIDFIICLGGDG------TLLYASSLFQG 130 (365)
T ss_dssp HHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCC-TTTCSEEEEESSTT------HHHHHHHHCSS
T ss_pred HHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhc-ccCCCEEEEEcChH------HHHHHHHHhcc
Confidence 368899999988876431000 00111 12689999999965 455555554 4
Q ss_pred CCCCEEeeeHhH
Q 029484 59 PTVPLFGVCMGL 70 (192)
Q Consensus 59 ~~~PilGIC~G~ 70 (192)
..+|||||-+|.
T Consensus 131 ~~~PvlGiN~G~ 142 (365)
T 3pfn_A 131 SVPPVMAFHLGS 142 (365)
T ss_dssp SCCCEEEEESSS
T ss_pred CCCCEEEEcCCC
Confidence 579999999873
|
| >3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=80.12 E-value=3 Score=30.03 Aligned_cols=45 Identities=11% Similarity=0.044 Sum_probs=28.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHH----h----ccCCCeEEECCCCCCCCCc
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEEL----K----RKNPRGVLISPGPGAPQDS 47 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~----~----~~~~dglii~GG~~~~~~~ 47 (192)
|.++|++.|+++.....-..+.+.+ . ..++|.||.+||-|-..++
T Consensus 45 L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~~~~D 97 (178)
T 3iwt_A 45 IKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTD 97 (178)
T ss_dssp HHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTC
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcccCCCC
Confidence 6788999999886553211223322 1 1368999999996654443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 192 | ||||
| d1qdlb_ | 195 | c.23.16.1 (B:) Anthranilate synthase GAT subunit, | 1e-33 | |
| d1a9xb2 | 228 | c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthe | 3e-30 | |
| d1i7qb_ | 192 | c.23.16.1 (B:) Anthranilate synthase GAT subunit, | 8e-29 | |
| d1gpma2 | 205 | c.23.16.1 (A:3-207) GMP synthetase {Escherichia co | 6e-26 | |
| d1wl8a1 | 188 | c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA | 1e-21 | |
| d1l9xa_ | 288 | c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Ho | 9e-20 | |
| d2a9va1 | 196 | c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA | 9e-19 | |
| d1o1ya_ | 230 | c.23.16.1 (A:) Hypothetical protein TM1158 {Thermo | 3e-11 | |
| d2nv0a1 | 195 | c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bac | 4e-10 | |
| d1k9vf_ | 200 | c.23.16.1 (F:) GAT subunit, HisH, (or domain) of i | 5e-08 | |
| d1ka9h_ | 195 | c.23.16.1 (H:) GAT subunit, HisH, (or domain) of i | 1e-04 | |
| d1jvna2 | 232 | c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain | 1e-04 | |
| d1q7ra_ | 202 | c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus | 1e-04 | |
| d2ghra1 | 281 | c.23.16.8 (A:17-297) Homoserine O-succinyltransfer | 2e-04 | |
| d2abwa1 | 218 | c.23.16.1 (A:2-219) Pyridoxine biosynthesis protei | 2e-04 |
| >d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 116 bits (291), Expect = 1e-33
Identities = 69/180 (38%), Positives = 103/180 (57%), Gaps = 7/180 (3%)
Query: 6 YMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG---APQDSGISLQTVLELGPTVP 62
+GELG + V RNDE++++ ++R +P ++ISPGPG +D G+SL + LG P
Sbjct: 20 IVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTP 79
Query: 63 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSL 122
+ GVC+G Q IG AFG KI R+ S+++ + L G++ F A RYHSL
Sbjct: 80 ILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNSP-LSLYYGIAKEFKATRYHSL 138
Query: 123 VIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182
V+++ P ED IMA H++Y + GVQFHPES+ T+ G I+ NF+ +
Sbjct: 139 VVDEVHRPLI--VDAISAEDNEIMAIHHEEYP-IYGVQFHPESVGTSLGYKILYNFLNRV 195
|
| >d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 108 bits (271), Expect = 3e-30
Identities = 34/184 (18%), Positives = 71/184 (38%), Gaps = 14/184 (7%)
Query: 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGP 59
L+ + + G + + E++ + NP G+ +S GPG P ++ + + L
Sbjct: 51 RNILRMLVDRGCRLTIVPAQT-SAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET 109
Query: 60 TVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRY 119
+P+FG+C+G Q + A G K V+ G G + ++ +
Sbjct: 110 DIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKN----------VVMITAQN 159
Query: 120 HSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTE-GKTIVRNF 178
H +++ + P++ DG + Q +PE+ + +F
Sbjct: 160 HGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKP-AFSFQGNPEASPGPHDAAPLFDHF 218
Query: 179 IKMI 182
I++I
Sbjct: 219 IELI 222
|
| >d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Serratia marcescens [TaxId: 615]
Score = 104 bits (259), Expect = 8e-29
Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 12/183 (6%)
Query: 6 YMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP 62
+ G+ +YRN E+ +E L+ +++SPGPG P ++G + + L +P
Sbjct: 19 QLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRLRGQLP 78
Query: 63 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSL 122
+ G+C+G Q I EA+GG++ ++ ++HGK+S + +D +G+ AG++NP RYHSL
Sbjct: 79 IIGICLGHQAIVEAYGGQVGQAG-EILHGKASAIAHDG---EGMFAGMANPLPVARYHSL 134
Query: 123 VIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182
V ++MA R + + + G QFHPESI+TT G ++ +
Sbjct: 135 VGSNIPAD----LTVNARFGEMVMAVRDDR-RRVCGFQFHPESILTTHGARLLEQTLAWA 189
Query: 183 VRK 185
+ K
Sbjct: 190 LAK 192
|
| >d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthetase species: Escherichia coli [TaxId: 562]
Score = 96.9 bits (240), Expect = 6e-26
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 1/184 (0%)
Query: 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 63
+ + ELG + E++ D T +++ NP G+++S GP + + VP+
Sbjct: 22 ARRVRELGVYCELWAWDV-TEAQIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPV 80
Query: 64 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLV 123
FGVC G+Q + GG + S V D G+ L+ +
Sbjct: 81 FGVCYGMQTMAMQLGGHVEASNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMS 140
Query: 124 IEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183
+ + +T + + A + K GVQFHPE T +G ++ F++ I
Sbjct: 141 HGDKVTAIPSDFITVASTESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDIC 200
Query: 184 RKEA 187
+ EA
Sbjct: 201 QCEA 204
|
| >d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: gamma-glutamyl hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.3 bits (202), Expect = 9e-20
Identities = 33/228 (14%), Positives = 61/228 (26%), Gaps = 41/228 (17%)
Query: 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL----- 57
++KY+ G R D + ++ PG +
Sbjct: 30 YVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSI 89
Query: 58 -----GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG---------E 103
G P++G C+G + + G+ + + + + +
Sbjct: 90 QSFDDGDYFPVWGTCLGFEELSLLISGECLLTATD-TVDVAMPLNFTGGQLHSRMFQNFP 148
Query: 104 DGLLAGLSNPFTAGRYHSLVIEKESFPSDA-----LEVTAWTEDGL---IMAARHKKYKH 155
LL L+ +H + ++F + V DG I KY
Sbjct: 149 TELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPV 208
Query: 156 LQGVQFHPESII-----------TTEGKTIVRNFIKMIVRKEAADSQN 192
GVQ+HPE + V EA + +
Sbjct: 209 Y-GVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFV-NEARKNNH 254
|
| >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthase subunit A, GuaAA species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 78.0 bits (191), Expect = 9e-19
Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 18/190 (9%)
Query: 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTV 61
+ + ELG ++ ND ++ + G+++S G + L +V +
Sbjct: 18 WRVLRELGVDTKIVPND---IDSSELDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNY 74
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 121
P+ G+C+G Q I FG +V++ + + GL + T H+
Sbjct: 75 PILGICVGAQFIALHFGASVVKAKHPEFGK----TKVSVMHSENIFGGLPSEITVWENHN 130
Query: 122 LVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181
I D + A + + HK + + QFHPE T G+ I RNFI +
Sbjct: 131 DEIIN---LPDDFTLAASSATCQVQGFYHKT-RPIYATQFHPEVEHTQYGRDIFRNFIGI 186
Query: 182 I-----VRKE 186
++KE
Sbjct: 187 CASYREIQKE 196
|
| >d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein TM1158 species: Thermotoga maritima [TaxId: 2336]
Score = 58.1 bits (139), Expect = 3e-11
Identities = 26/187 (13%), Positives = 52/187 (27%), Gaps = 22/187 (11%)
Query: 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE----- 56
E + F+ + E + V++ G + E
Sbjct: 19 MMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIE 78
Query: 57 --LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPF 114
L +P G+C+G Q + + G + R G G + + +
Sbjct: 79 EILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIGWYFVEKVSDNKF---FREFPDRL 135
Query: 115 TAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTI 174
++H + + +E Y G+QFH E G
Sbjct: 136 RVFQWHGDTFDLPRRATR----VFTSEKYENQ---GFVYGKAVGLQFHIEV-----GART 183
Query: 175 VRNFIKM 181
++ +I+
Sbjct: 184 MKRWIEA 190
|
| >d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus subtilis [TaxId: 1423]
Score = 54.5 bits (130), Expect = 4e-10
Identities = 36/188 (19%), Positives = 59/188 (31%), Gaps = 26/188 (13%)
Query: 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL------ 57
+ + G V + E +L + LI PG + +
Sbjct: 17 IHAIEACGAAGLVVKRPE----QLNEVD---GLILPGGESTTMRRLIDTYQFMEPLREFA 69
Query: 58 GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYY---DEKGEDGLLAGLSNPF 114
P+FG C GL + + G + + D D + GL PF
Sbjct: 70 AQGKPMFGTCAGLIILAKEIAGSDNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLDEPF 129
Query: 115 TAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTI 174
T + I + +G I+AA+ G FHPE TE +
Sbjct: 130 TGVFIRAPHI----LEAGENVEVLSEHNGRIVAAKQG---QFLGCSFHPEL---TEDHRV 179
Query: 175 VRNFIKMI 182
+ F++M+
Sbjct: 180 TQLFVEMV 187
|
| >d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Score = 48.8 bits (115), Expect = 5e-08
Identities = 30/185 (16%), Positives = 61/185 (32%), Gaps = 14/185 (7%)
Query: 9 ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-------SGISLQTVLELGPTV 61
+FE + + + +L PG G + + + +
Sbjct: 22 RASENFEDVSIELVESPRNDLYD---LLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDER 78
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 121
+ GVC+G+Q + E L ++ G + G + Y+
Sbjct: 79 YVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNEVIFKDTFPNGYYY 138
Query: 122 LVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPE-SIITTEGKTIVRNFIK 180
V + + + DG I + +K + G QFHPE S + G+ ++ I+
Sbjct: 139 FVHTYRAVCEEEHVLGTTEYDGEIFPSAVRK-GRILGFQFHPEKS--SKIGRKLLEKVIE 195
Query: 181 MIVRK 185
+ +
Sbjct: 196 CSLSR 200
|
| >d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Score = 38.9 bits (89), Expect = 1e-04
Identities = 32/175 (18%), Positives = 53/175 (30%), Gaps = 6/175 (3%)
Query: 9 ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 68
G+ V ++ + E P A Q+SG + L +P G+C+
Sbjct: 22 AAGFSVAVAQDPKAHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICV 81
Query: 69 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKES 128
G+Q + E LG++ G+ + G A A S
Sbjct: 82 GMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGWNALEFGGAFAPLTGRHFYFANS 141
Query: 129 F---PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 180
+ + E A K+ +L QFHPE G + +
Sbjct: 142 YYGPLTPYSLGKGEYEGTPFTALLAKE--NLLAPQFHPE-KSGKAGLAFLALARR 193
|
| >d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Score = 39.2 bits (90), Expect = 1e-04
Identities = 39/198 (19%), Positives = 64/198 (32%), Gaps = 32/198 (16%)
Query: 9 ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA-------PQDSGISLQTVLELGPTV 61
LGY ++ ++ + + + I PG G + G +
Sbjct: 26 HLGYEVQLVKSPK----DFNISGTSRL-ILPGVGNYGHFVDNLFNRGFEKPIREYIESGK 80
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG---------------EDGL 106
P+ G+C+GLQ + + L + K S EK GL
Sbjct: 81 PIMGICVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIGWNSCIPSENLFFGL 140
Query: 107 LAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGL--IMAARHKKYKHLQGVQFHPE 164
F L EK+ + A + G +AA +K ++ QFHPE
Sbjct: 141 DPYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNKN--NIFATQFHPE 198
Query: 165 SIITTEGKTIVRNFIKMI 182
G ++ NF+K
Sbjct: 199 -KSGKAGLNVIENFLKQQ 215
|
| >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus stearothermophilus [TaxId: 1422]
Score = 38.7 bits (89), Expect = 1e-04
Identities = 27/179 (15%), Positives = 54/179 (30%), Gaps = 18/179 (10%)
Query: 9 ELGYHFEVYRNDELTVEELKRKNPRGVLISPGP-----GAPQDSGISLQTVLELGPTVPL 63
G + + E + + G+++ G G+ P+
Sbjct: 27 ACGAEAVIVKKSE------QLEGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPM 80
Query: 64 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLV 123
FG C GL + + G + + ++ + +
Sbjct: 81 FGTCAGLILLAKRIVGYDEPHLGLMDITVERNSFGRQRESFEAELSIKGVGDGFVGVFIR 140
Query: 124 IEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 182
D ++V A + I+AAR G FHPE T+ +++ F+ M+
Sbjct: 141 APHIVEAGDGVDVLATY-NDRIVAARQG---QFLGCSFHPEL---TDDHRLMQYFLNMV 192
|
| >d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: HTS-like domain: Homoserine O-succinyltransferase HTS (MetA) species: Bacillus cereus [TaxId: 1396]
Score = 38.9 bits (90), Expect = 2e-04
Identities = 21/150 (14%), Positives = 43/150 (28%), Gaps = 11/150 (7%)
Query: 23 TVEELKRKNPRGVLISPGP-GAPQDSGISLQTVLE------LGPTVPLFGVCMGLQCIGE 75
T +++ + G++I+ P + L+ +C G Q
Sbjct: 75 TFRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLY 134
Query: 76 AFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPS-DAL 134
G M G ++ LL G F A + + L
Sbjct: 135 HHYGVQKYPLKEKMFGVFEHEVREQH--VKLLQGFDELFFAPHSRHTEVRESDIREVKEL 192
Query: 135 EVTAWTEDGLIMAARHKKYKHLQGVQFHPE 164
+ A +E+ + ++ + + H E
Sbjct: 193 TLLANSEEAGVHLVIGQEGRQV-FALGHSE 221
|
| >d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Pyridoxine biosynthesis protein 2, Pdx2 species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 38.4 bits (88), Expect = 2e-04
Identities = 17/138 (12%), Positives = 33/138 (23%), Gaps = 23/138 (16%)
Query: 62 PLFGVCMGLQCIGEAFGGKIVRSP------LGVMHGKSSLVYYDEK-----------GED 104
P++G C G + + + S G + +Y + +
Sbjct: 81 PIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDS 140
Query: 105 GLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPE 164
+ I + A +I A + G FHPE
Sbjct: 141 SAFKKDLTAACIRAPYIREILSDEVKVLATFSHESYGPNIIAAVEQN---NCLGTVFHPE 197
Query: 165 SIITTEGKTIVRNFIKMI 182
+ F + +
Sbjct: 198 L---LPHTAFQQYFYEKV 212
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 192 | |||
| d2a9va1 | 196 | GMP synthase subunit A, GuaAA {Archaeon Thermoplas | 100.0 | |
| d1qdlb_ | 195 | Anthranilate synthase GAT subunit, TrpG {Archaeon | 100.0 | |
| d1wl8a1 | 188 | GMP synthase subunit A, GuaAA {Archaeon Pyrococcus | 100.0 | |
| d1a9xb2 | 228 | Carbamoyl phosphate synthetase, small subunit C-te | 100.0 | |
| d1i7qb_ | 192 | Anthranilate synthase GAT subunit, TrpG {Serratia | 100.0 | |
| d1gpma2 | 205 | GMP synthetase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1o1ya_ | 230 | Hypothetical protein TM1158 {Thermotoga maritima [ | 100.0 | |
| d1l9xa_ | 288 | gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta | 99.95 | |
| d2nv0a1 | 195 | Hypothetical protein YaaE {Bacillus subtilis [TaxI | 99.95 | |
| d1s1ma1 | 258 | CTP synthase PyrG, C-terminal domain {Escherichia | 99.95 | |
| d1q7ra_ | 202 | Hypothetical protein YaaE {Bacillus stearothermoph | 99.94 | |
| d1vcoa1 | 250 | CTP synthase PyrG, C-terminal domain {Thermus ther | 99.94 | |
| d1jvna2 | 232 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.91 | |
| d1k9vf_ | 200 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.9 | |
| d2abwa1 | 218 | Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p | 99.89 | |
| d1ka9h_ | 195 | GAT subunit, HisH, (or domain) of imidazoleglycero | 99.89 | |
| d2ghra1 | 281 | Homoserine O-succinyltransferase HTS (MetA) {Bacil | 99.84 | |
| d1t3ta2 | 262 | FGAM synthase PurL, amidotransferase domain {Salmo | 99.66 | |
| d1vhqa_ | 217 | Putative sigma cross-reacting protein 27A (SCRP-27 | 98.18 | |
| d1g2ia_ | 166 | Intracellular protease {Archaeon Pyrococcus horiko | 97.86 | |
| d1oi4a1 | 170 | Hypothetical protein YhbO {Escherichia coli [TaxId | 97.79 | |
| d2fexa1 | 188 | Hypothetical protein Atu0886 {Agrobacterium tumefa | 97.74 | |
| d1p80a1 | 156 | Catalase, C-terminal domain {Escherichia coli, HPI | 97.7 | |
| d1u9ca_ | 221 | GK2698 ortholog {Bacillus stearothermophilus [TaxI | 97.68 | |
| d1p5fa_ | 186 | DJ-1 {Human (Homo sapiens) [TaxId: 9606]} | 97.64 | |
| d1sy7a1 | 184 | Catalase, C-terminal domain {Neurospora crassa [Ta | 97.6 | |
| d2ab0a1 | 195 | Protein ThiJ (YajL) {Escherichia coli [TaxId: 562] | 97.46 | |
| d1qvwa_ | 236 | Hypothetical protein Ydr533Cp {Baker's yeast (Sacc | 97.1 | |
| d1n57a_ | 279 | HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} | 96.27 | |
| d1z0sa1 | 249 | Inorganic polyphosphate/ATP-NAD kinase PpnK {Archa | 95.12 | |
| d1t0ba_ | 240 | GK2113 homologue {Bacillus stearothermophilus [Tax | 93.15 | |
| d1u0ta_ | 302 | Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob | 92.3 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 91.11 | |
| d2nqra3 | 149 | MoeA, central domain {Escherichia coli [TaxId: 562 | 88.92 | |
| d2gk3a1 | 246 | Putative cytoplasmic protein STM3548 {Salmonella t | 88.27 | |
| d2fz5a1 | 137 | Flavodoxin {Megasphaera elsdenii [TaxId: 907]} | 83.41 | |
| d2bona1 | 295 | Lipid kinase YegS {Escherichia coli [TaxId: 562]} | 81.62 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 80.26 | |
| d1fyea_ | 229 | Aspartyl dipeptidase PepE {Salmonella typhimurium | 80.12 |
| >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthase subunit A, GuaAA species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=5.6e-40 Score=249.05 Aligned_cols=179 Identities=24% Similarity=0.330 Sum_probs=149.7
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH--hCCCCCEEeeeHhHHHHHHHhC
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~--~~~~~PilGIC~G~Q~l~~~~g 78 (192)
+|++++|+++|+++++++++ .+..++. ++||||++||++++.+...+...+.+ .+.++|+||||+|||+|+.++|
T Consensus 15 ~~i~r~l~~lg~~~~i~~~d-~~~~~~~--~~dgiIl~Gg~~~~~~~~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~~g 91 (196)
T d2a9va1 15 HREWRVLRELGVDTKIVPND-IDSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFG 91 (196)
T ss_dssp CHHHHHHHHTTCBCCEEETT-SCGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEEEETHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCeEEEEeCC-CCHHHHh--cCCcEEEeccccccccccchhhhHHHHHhhcCceEEEeehhhhhhhhccc
Confidence 47899999999999999974 5666666 89999999999998877766555443 3578999999999999999999
Q ss_pred CeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEE
Q 029484 79 GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQG 158 (192)
Q Consensus 79 g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g 158 (192)
|++.+.... ...+..+... ..+++|+++++.+.++++|++.+.. ++++++++|+++++.+++++++++| +||
T Consensus 92 g~~~~~~~~--~~~~~~~~~~--~~~~l~~~~~~~~~~~~~H~~~v~~---~~~~~~v~a~~~~~~v~ai~~~~~~-i~g 163 (196)
T d2a9va1 92 ASVVKAKHP--EFGKTKVSVM--HSENIFGGLPSEITVWENHNDEIIN---LPDDFTLAASSATCQVQGFYHKTRP-IYA 163 (196)
T ss_dssp CEEEEEEEE--EEEEEEEEES--CCCGGGTTCCSEEEEEEEEEEEEES---CCTTEEEEEECSSCSCSEEEESSSS-EEE
T ss_pred ccccccccc--ccccceEEEe--cCCccccCCCCceEEEecceeEEEe---CCCccceeecccccchheEEECCCC-EEE
Confidence 999987632 2233333333 3678999999999999999999876 6689999999999999999999987 999
Q ss_pred EeccCCCCCCCchHHHHHHHHHHHHHHhhhhc
Q 029484 159 VQFHPESIITTEGKTIVRNFIKMIVRKEAADS 190 (192)
Q Consensus 159 ~QfHPE~~~~~~~~~l~~~f~~~~~~~~~~~~ 190 (192)
+|||||+..+++|.+||++|++++++.++.++
T Consensus 164 vQfHPE~~~s~~G~~il~~F~~~~~~~~~~~~ 195 (196)
T d2a9va1 164 TQFHPEVEHTQYGRDIFRNFIGICASYREIQK 195 (196)
T ss_dssp ESSCTTSTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCcccCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 99999988788999999999999998766543
|
| >d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.5e-38 Score=238.80 Aligned_cols=175 Identities=41% Similarity=0.662 Sum_probs=145.5
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchh--HHH-HHHhCCCCCEEeeeHhHHHHHHHhC
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS--LQT-VLELGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~--~~~-~~~~~~~~PilGIC~G~Q~l~~~~g 78 (192)
||+++|+++|++++++++++.+.+++...++|||+++|||+++.+.... ... .+.++.++|+||||+|||+|+.++|
T Consensus 16 Ni~~~l~~lG~~~~vi~~d~~~~~~i~~~~~~gvilsgGp~~~~~~~~~~~~~~i~~~~~~~~PiLGIClG~Qll~~~~G 95 (195)
T d1qdlb_ 16 NIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFG 95 (195)
T ss_dssp HHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEEETHHHHHHHHHTT
T ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHHHhhCCCccccCCCCCccccccccccchhhhhhhcCCCCEEEeehhhhhhhhccC
Confidence 6899999999999999988788888888899999999999999875432 223 3447889999999999999999999
Q ss_pred CeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEE-EcCCCceEEEeeCCCCceE
Q 029484 79 GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTA-WTEDGLIMAARHKKYKHLQ 157 (192)
Q Consensus 79 g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a-~s~~~~i~ai~~~~~~~~~ 157 (192)
+++.+.+. ..++....+.........+|.++++.+.++.+|++.+.. .+.+...++ .++++.++|++++++| +|
T Consensus 96 ~~v~~~~~-~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~h~~~~~~---~~~~~~~~~~~~~~~~i~ai~~~~~~-i~ 170 (195)
T d1qdlb_ 96 AKIRRARK-VFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVDE---VHRPLIVDAISAEDNEIMAIHHEEYP-IY 170 (195)
T ss_dssp CEEEEEEE-EEEEEEEEEEECCSSCCSTTTTCCSEEEEEEEEEEEEEC---CCTTEEEEEEESSSCCEEEEEESSSS-EE
T ss_pred CEEEeecc-cccccccccccccccccccccCCCccceeeecceeeeec---cccCcccceeccCCCcEEEEEECCCC-EE
Confidence 99999874 345555556665555677999999999999999988765 334555554 5578899999999887 99
Q ss_pred EEeccCCCCCCCchHHHHHHHHHH
Q 029484 158 GVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 158 g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
|+|||||++.++.|.+|++||+..
T Consensus 171 GvQFHPE~~~s~~G~~il~nFl~~ 194 (195)
T d1qdlb_ 171 GVQFHPESVGTSLGYKILYNFLNR 194 (195)
T ss_dssp EESSBTTSTTCTTHHHHHHHHHHH
T ss_pred EEEcCCCCCCCcchHHHHHHHHhh
Confidence 999999998778999999999975
|
| >d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-38 Score=243.36 Aligned_cols=173 Identities=23% Similarity=0.461 Sum_probs=143.9
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHHHHHHhCCe
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGK 80 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~gg~ 80 (192)
|+++.+++.|+.+++++++ .+.+++...++||||||||||+|.+.+..++.+++ ++.++||||||+|||+|+.++||+
T Consensus 52 ~ilr~l~~~~~~~~v~p~~-~~~~~i~~~~pdgivlS~GPg~P~~~~~~~~~~~~~~~~~iPILGIClG~Qlia~~~Gg~ 130 (228)
T d1a9xb2 52 NILRMLVDRGCRLTIVPAQ-TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAK 130 (228)
T ss_dssp HHHHHHHHTTEEEEEEETT-CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEEETHHHHHHHHHTTCC
T ss_pred HhHhHHHhcCceEEEcCCC-CCHHHHHhcCCCEEEEeCCCCccccchhHHHHHHHHHhCCCCEEEEEcChHHHHHHcCCc
Confidence 6889999999999999985 88999998899999999999999998877777765 678999999999999999999999
Q ss_pred eeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEc-CCCceEEEeeCCCCceEEE
Q 029484 81 IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGV 159 (192)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~ai~~~~~~~~~g~ 159 (192)
+.+...+ .+|...++.... ... .+....+|++.+..+.++ ..+.+++.+ +|+.++|++++++| +||+
T Consensus 131 v~k~~~~-~~G~~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~-~~~~v~~~s~~d~~i~ai~h~~~~-i~gV 198 (228)
T d1a9xb2 131 TVKMKFG-HHGGNHPVKDVE---KNV------VMITAQNHGFAVDEATLP-ANLRVTHKSLFDGTLQGIHRTDKP-AFSF 198 (228)
T ss_dssp EEEEEEE-EEEEEEEEEETT---TTE------EEEEEEEEEEEECSTTCC-TTEEEEEEETTTCCEEEEEESSSS-EEEE
T ss_pred eeecccc-cccccccccccc---cce------eeeecccccceecccccc-cceEEEEEecCCCcEEEEEECCCC-EEEE
Confidence 9999844 577766665542 111 244567788777655555 566777666 68999999999987 9999
Q ss_pred eccCCCCCCC-chHHHHHHHHHHHHHHhh
Q 029484 160 QFHPESIITT-EGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 160 QfHPE~~~~~-~~~~l~~~f~~~~~~~~~ 187 (192)
|||||...++ ++..||+||++.+++.++
T Consensus 199 QFHPE~~~t~~dg~~l~~nFl~~i~~~kk 227 (228)
T d1a9xb2 199 QGNPEASPGPHDAAPLFDHFIELIEQYRK 227 (228)
T ss_dssp SSCTTCSSSCSTTTHHHHHHHHHHHHHHH
T ss_pred eCCCCCCCCcccHHHHHHHHHHHHHHHhC
Confidence 9999999888 599999999999987654
|
| >d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Anthranilate synthase GAT subunit, TrpG species: Serratia marcescens [TaxId: 615]
Probab=100.00 E-value=1.9e-37 Score=234.33 Aligned_cols=173 Identities=33% Similarity=0.634 Sum_probs=143.4
Q ss_pred cHHHHHHhCCCeEEEEeCCCCC---HHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhC
Q 029484 2 TFLKYMGELGYHFEVYRNDELT---VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~---~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~g 78 (192)
||++.|+++|.++++++.+... .+++...++|+|+++|||+++.+..........++.++||||||+|||+|+.++|
T Consensus 15 ni~~~l~~lG~~~~v~~~~~~~~~~~~~l~~~~~~~iils~Gpg~~~~~~~~~~i~~~l~~~iPiLGIClG~Q~la~~~G 94 (192)
T d1i7qb_ 15 NLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRLRGQLPIIGICLGHQAIVEAYG 94 (192)
T ss_dssp HHHHHHHHTTCEEEEEETTSCHHHHHHHHHHCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCEEEETHHHHHHHHHTT
T ss_pred HHHHHHHHCCCeEEEEeCCCcccccHHHHHhcCCCeEEecCccccccccccchhhHHhhhcCccEEeeeHHHHHHHHHCC
Confidence 6899999999999999975322 3345556899999999999998877655555567889999999999999999999
Q ss_pred CeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCCCceEE
Q 029484 79 GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQG 158 (192)
Q Consensus 79 g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~~~~~g 158 (192)
|++.+... ..+|....+... .+.+|.+.+..+.++.+|++.+.. ++..+.++|.+ +..++|++++++| +||
T Consensus 95 g~v~~~~~-~~~g~~~~~~~~---~~~l~~~~~~~~~~~~~h~~~~~~---~~~~~~~~a~~-~~~i~ai~~~~~~-i~G 165 (192)
T d1i7qb_ 95 GQVGQAGE-ILHGKASAIAHD---GEGMFAGMANPLPVARYHSLVGSN---IPADLTVNARF-GEMVMAVRDDRRR-VCG 165 (192)
T ss_dssp CEEEEEEE-EEEEEEEEEEEC---CCGGGTTCCSSEEEEEEEEEEEES---CCTTSEEEEEE-TTEEEEEEETTTT-EEE
T ss_pred CeEEECCc-ccccceEEEeec---CCCceeeccccceEEeeccccccc---ccceeeeecCC-CCeeEEEEECCCC-EEE
Confidence 99999873 346655555443 566999988999999999999986 56788998876 4568999999987 999
Q ss_pred EeccCCCCCCCchHHHHHHHHHHHH
Q 029484 159 VQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 159 ~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
+|||||...+++|.+|++||+++..
T Consensus 166 vQFHPEs~~t~~G~~il~nFl~~~~ 190 (192)
T d1i7qb_ 166 FQFHPESILTTHGARLLEQTLAWAL 190 (192)
T ss_dssp ESSCTTSTTSTTHHHHHHHHHHHHH
T ss_pred EEeCCCcCCCCChHHHHHHHHHHHh
Confidence 9999998778899999999998754
|
| >d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthetase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-36 Score=228.97 Aligned_cols=175 Identities=23% Similarity=0.396 Sum_probs=137.4
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHHHHhCCee
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 81 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~~~~gg~v 81 (192)
+++++++++|+++++++++ .+.+++....+||++++|||+++.+...+......++.++|+||||+|||+|+.++||++
T Consensus 20 ~I~r~lr~lg~~~~I~~~d-~~~~~~~~~~~~giils~gp~~~~~~~~~~~~~~~~~~~~PiLGIClG~Qlla~~~Gg~v 98 (205)
T d1gpma2 20 LVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHV 98 (205)
T ss_dssp HHHHHHHHTTCEEEEEESC-CCHHHHHHHCCSEEEECCCSSCTTSTTCCCCCGGGGTSSSCEEEETHHHHHHHHHHTCEE
T ss_pred HHHHHHHHCCCEEEEECCC-CCHHHHhhcCCCeEEecCCCCccchhhhhhHHHHHHhCCCCEEEeccchhhhhhhcCCcc
Confidence 4789999999999999975 677777777999999999999998776553333346789999999999999999999999
Q ss_pred eecCCccccccceeeEEcccCCCccccCC--------CCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCCC
Q 029484 82 VRSPLGVMHGKSSLVYYDEKGEDGLLAGL--------SNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKY 153 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~~ 153 (192)
.+... ..+|........ ...++.++ ...+.++.+|++.+.. .++...+++.+.++.++++.++++
T Consensus 99 ~~~~~-~~~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 171 (205)
T d1gpma2 99 EASNE-REFGYAQVEVVN---DSALVRGIEDALTADGKPLLDVWMSHGDKVTA---IPSDFITVASTESCPFAIMANEEK 171 (205)
T ss_dssp ECCSS-CEEEEEEEEECS---CCTTTTTCCSEECTTSCEEEEEEEEECSEEEE---CCTTCEEEEECSSCSCSEEEETTT
T ss_pred ccccc-cccCcceecccc---ccccccccccccccCCccceeeeccccccccc---ccccceeeeccCCCceEEEEeCCC
Confidence 99874 345544333322 22233332 2345667888877765 557788888889999999999887
Q ss_pred CceEEEeccCCCCCCCchHHHHHHHHHHHHHH
Q 029484 154 KHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 185 (192)
Q Consensus 154 ~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~ 185 (192)
+ +||+|||||.+.+++|.+||+||++.++++
T Consensus 172 n-i~gvQFHPE~s~s~~G~~il~nFl~~i~~~ 202 (205)
T d1gpma2 172 R-FYGVQFHPEVTHTRQGMRMLERFVRDICQC 202 (205)
T ss_dssp T-EEEESBCTTSTTSTTHHHHHHHHHHTTSCC
T ss_pred C-EEEEEeecccCCCccHHHHHHHHHHHHhCC
Confidence 6 999999999987789999999999887654
|
| >d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein TM1158 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8.5e-33 Score=213.98 Aligned_cols=166 Identities=15% Similarity=0.187 Sum_probs=129.4
Q ss_pred cHHHHHHhCCCeEEEEeCCCCC--HHHHhccCCCeEEECCCCCCCCCcc--hhHHH----HHH-hCCCCCEEeeeHhHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSG--ISLQT----VLE-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~--~~~~~~~~~dglii~GG~~~~~~~~--~~~~~----~~~-~~~~~PilGIC~G~Q~ 72 (192)
++.++|++.|++++++..+..+ ++++. +|||+|++|||+++++.. +|++. ++. ++.++||||||+|||+
T Consensus 19 ~~~~~l~~~g~~~~~~~~~~~~~~p~~l~--~~d~iii~Ggp~~~~d~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Ql 96 (230)
T d1o1ya_ 19 MMEDIFREKNWSFDYLDTPKGEKLERPLE--EYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQM 96 (230)
T ss_dssp HHHHHHHHTTCEEEEECGGGTCCCSSCGG--GCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHH
T ss_pred HHHHHHHHCCCEEEEEECCCCCcCCcchh--hCCEEEEcCCCcccccchhhhhhHHHHHHHHHHHHhcceEEEeecCHHH
Confidence 5789999999999999764222 12223 799999999999998764 45432 332 4678999999999999
Q ss_pred HHHHhCCeeeecCCccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCC
Q 029484 73 IGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKK 152 (192)
Q Consensus 73 l~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~ 152 (192)
|+.++||++.+.+.+. ...+..... ..++++|+++++.+.++.+|++.+. ++++++++|+++++.+++++.+
T Consensus 97 la~alGg~V~~~~~~~-~~~~~~~~~--~~~~~l~~~~~~~~~~~~~H~d~~~----lp~~~~~la~s~~~~~qa~~~~- 168 (230)
T d1o1ya_ 97 LAKVLGASVYRGKNGE-EIGWYFVEK--VSDNKFFREFPDRLRVFQWHGDTFD----LPRRATRVFTSEKYENQGFVYG- 168 (230)
T ss_dssp HHHHTTCCEEECTTCC-EEEEEEEEE--CCCCGGGTTSCSEEEEEEEESEEEC----CCTTCEEEEECSSCSCSEEEET-
T ss_pred HHHHhccccccccccc-ccccccccc--ccchhhhccCCccceEEEecceeee----eccchhhhhhhcCCceEEEEec-
Confidence 9999999999987543 333333332 3478899999999999999999665 4578999999999999999875
Q ss_pred CCceEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 029484 153 YKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 184 (192)
Q Consensus 153 ~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~ 184 (192)
++||+|||||.+ ..++++|++....
T Consensus 169 --~~~g~QfHPE~~-----~~~~~~~i~~~~~ 193 (230)
T d1o1ya_ 169 --KAVGLQFHIEVG-----ARTMKRWIEAYKD 193 (230)
T ss_dssp --TEEEESSBSSCC-----HHHHHHHHHHTHH
T ss_pred --CEeEEEeCCCCC-----HHHHHHHHHHhHH
Confidence 399999999985 6678888776543
|
| >d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: gamma-glutamyl hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.9e-28 Score=195.21 Aligned_cols=162 Identities=19% Similarity=0.338 Sum_probs=111.1
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhcc--CCCeEEECCCCCCCCCcchh--HHH-----H--HHhCCCCCEEeeeHhH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRK--NPRGVLISPGPGAPQDSGIS--LQT-----V--LELGPTVPLFGVCMGL 70 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglii~GG~~~~~~~~~~--~~~-----~--~~~~~~~PilGIC~G~ 70 (192)
+.+++++++|+.+.+++++ .+.+++... .+||||++||+.+....... .+. + .+.++++||||||+||
T Consensus 29 sYvk~ie~aGa~vvpi~~~-~~~~~~~~~l~~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~G~ 107 (288)
T d1l9xa_ 29 SYVKYLESAGARVVPVRLD-LTEKDYEILFKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGF 107 (288)
T ss_dssp HHHHHHHHTTCEEEEECSS-CCHHHHHHHHHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHH
T ss_pred HHHHHHHHCCCEEEEECCC-CCHHHHHHHHhhcCCeEecCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcHHH
Confidence 4689999999999999975 556665432 78999999998776543321 111 1 1256789999999999
Q ss_pred HHHHHHhCCeeeecCCccccccceeeEEcc-cCCCccccCCCC--------ccccccccccccccc-----CCCCCCeEE
Q 029484 71 QCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSN--------PFTAGRYHSLVIEKE-----SFPSDALEV 136 (192)
Q Consensus 71 Q~l~~~~gg~v~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~--------~~~~~~~H~~~v~~~-----~l~~~~~~~ 136 (192)
|+|+.++||++...... ..+...++.... ...+.++..++. ...++.+|+++|... +.++.++++
T Consensus 108 Qll~~~~gG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~H~~~v~~~~~~~~~~l~~~~~v 186 (288)
T d1l9xa_ 108 EELSLLISGECLLTATD-TVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNV 186 (288)
T ss_dssp HHHHHHHHSSCCCEEEE-EEEEEECCEECSTTTTCSTTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTCHHHHHHEEE
T ss_pred HHHHHHhCCEeeccccC-cCCcceeEEecCCCccceeEeecccchhhhccCCceEEEecccEEEecccchhhhcCCceEE
Confidence 99999999988765522 233333333322 223445555442 234677899988532 113478999
Q ss_pred EEEcCCCc---eEEEeeCCCCceEEEeccCCCC
Q 029484 137 TAWTEDGL---IMAARHKKYKHLQGVQFHPESI 166 (192)
Q Consensus 137 ~a~s~~~~---i~ai~~~~~~~~~g~QfHPE~~ 166 (192)
+|++.|+. |++++++++| ++|+|||||++
T Consensus 187 ~a~s~d~~~e~I~~ie~~~~p-i~GvQfHPEk~ 218 (288)
T d1l9xa_ 187 LTTNTDGKIEFISTMEGYKYP-VYGVQWHPEKA 218 (288)
T ss_dssp EEEEESSSCEEEEEEEESSSC-EEEESSCTTHH
T ss_pred EEEECCCCeEEEEEEEcCCCc-EEEEEcCCCCC
Confidence 99998876 4555778877 99999999964
|
| >d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus subtilis [TaxId: 1423]
Probab=99.95 E-value=4.7e-29 Score=188.33 Aligned_cols=170 Identities=20% Similarity=0.315 Sum_probs=113.4
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC----cchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~----~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
+++++|+.+|+++.+++. .+++. ++|+|||+||+.+... ...+.+.+++ .++++|+||||+|||+|+++
T Consensus 15 ~~~~al~~~G~~~~~i~~----~~~l~--~~D~lIlPGG~~~~~~~~~~~~~~~~~I~~~~~~g~pilGIC~G~Qll~~~ 88 (195)
T d2nv0a1 15 EHIHAIEACGAAGLVVKR----PEQLN--EVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKE 88 (195)
T ss_dssp HHHHHHHHTTCEEEEECS----GGGGG--GCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBC
T ss_pred HHHHHHHHCCCcEEEECC----HHHHh--hCCEEEECCCCccHHHHHhhhchhcchhhhhhhhcceeeeccccHHHHHhh
Confidence 467889999999999963 34555 7999999998654321 1123444444 57899999999999999998
Q ss_pred hCCeeeecCCccccccceeeE----EcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEEEeeCC
Q 029484 77 FGGKIVRSPLGVMHGKSSLVY----YDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKK 152 (192)
Q Consensus 77 ~gg~v~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~ai~~~~ 152 (192)
+++...... +...+...... ......+..+++++..+.+++.|++.+.. +++++++++.+++..+ |++.+
T Consensus 89 ~~g~~~~~l-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~---~~~~~~vla~~~~~~~-a~~~~- 162 (195)
T d2nv0a1 89 IAGSDNPHL-GLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHILE---AGENVEVLSEHNGRIV-AAKQG- 162 (195)
T ss_dssp CC----CCC-CCSCEEEECCCSCTTTSEEEEEECCTTCSSCEEEEEESCCEEEE---ECTTCEEEEEETTEEE-EEEET-
T ss_pred hcccccccc-cccccccccccccccceeeeeeecccCCCCCceEEEEeeeEEEe---cCCCceeeeeECCEEE-EEEEC-
Confidence 877543322 11001000000 00011234567777788888999988876 5578899988766555 66653
Q ss_pred CCceEEEeccCCCCCCCchHHHHHHHHHHHHHHhhh
Q 029484 153 YKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAA 188 (192)
Q Consensus 153 ~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~~~~ 188 (192)
+++|+|||||++. +.+++++|++.+++.+.+
T Consensus 163 --ni~g~QFHPE~s~---~~~~~~~F~~~~~~~k~~ 193 (195)
T d2nv0a1 163 --QFLGCSFHPELTE---DHRVTQLFVEMVEEYKQK 193 (195)
T ss_dssp --TEEEESSCTTSSS---CCHHHHHHHHHHHHHHHH
T ss_pred --CEEEEEeCCcccC---CcHHHHHHHHHHHHHHHc
Confidence 4999999999873 345889999999987654
|
| >d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: CTP synthase PyrG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.5e-28 Score=189.76 Aligned_cols=189 Identities=16% Similarity=0.214 Sum_probs=126.2
Q ss_pred cHHHHHHhC----CCeEEEEeCCCCCHHHH---hccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGEL----GYHFEVYRNDELTVEEL---KRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~----g~~~~v~~~~~~~~~~~---~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~l~ 74 (192)
|+.++|+.+ +.++.+...+....++- ...++|||+++||.|.....+.......++++++|+||||+|||+++
T Consensus 21 Sv~eaL~ha~~~~~~~v~i~wi~s~~~e~~~~~~L~~~dGIlvPGGFG~RG~eGki~ai~yARen~iPfLGIClGmQ~av 100 (258)
T d1s1ma1 21 SVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVAL 100 (258)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHHHH
T ss_pred hHHHHHHHhHHhcCCeEEEEEEccccccccccccccccccEEeecccCcCCHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 556666643 55555554421111111 12389999999999999888888777677889999999999999999
Q ss_pred HHhCCeeeecCCcc--cc--ccceeeEEc-c------------------------------cCCCccccCCC--Cccccc
Q 029484 75 EAFGGKIVRSPLGV--MH--GKSSLVYYD-E------------------------------KGEDGLLAGLS--NPFTAG 117 (192)
Q Consensus 75 ~~~gg~v~~~~~~~--~~--~~~~~~~~~-~------------------------------~~~~~l~~~~~--~~~~~~ 117 (192)
..+..++...+... +. ...+++... . -.++++...+- ..+.-.
T Consensus 101 IE~ARnvlg~~~A~S~Ef~p~t~~pvi~~~~~~~~~~~~~~~~~~~~~~GgTmrlG~~~~~l~~~s~~~~~Y~~~~i~ER 180 (258)
T d1s1ma1 101 IDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVER 180 (258)
T ss_dssp HHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCEEEEEEEEECTTCHHHHHTTSSEEEEE
T ss_pred HHHHHHhCCCCCCcCCCCCCCCCCCEEEecccccccCCceeEeecccCccccccCcccchhhhhHHHHHHhcCcceehhh
Confidence 97665544332100 00 000111100 0 00112211111 223344
Q ss_pred cccccccccc---CCCCCCeEEEEEcCCC-ceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHHHHHHHHhhhhc
Q 029484 118 RYHSLVIEKE---SFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIVRKEAADS 190 (192)
Q Consensus 118 ~~H~~~v~~~---~l~~~~~~~~a~s~~~-~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~~~~ 190 (192)
+.|.|+|+++ .|...++++.+.++|+ .++++|.+++|+++|+|||||+.+.+ ...++|..|++++.+.++++|
T Consensus 181 HRHRYevN~~y~~~le~~gl~~sG~s~dg~~vEiiEl~~HPffvg~QfHPEf~Srp~~p~PLF~~Fi~Aa~~~~k~~~ 258 (258)
T d1s1ma1 181 HRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQA 258 (258)
T ss_dssp EEECCEECHHHHHHHHHTTCEEEEECSSSCCEEEEECTTSSSEEEESSCGGGTCCTTTCCHHHHHHHHHHHHHHHHCC
T ss_pred hhcchhhhhhhhhhhhcCCceeeeecCCCCeEEEEEeCCCCeEEEecCCccccCCCCCCChHHHHHHHHHHHHHHhcC
Confidence 6788888642 3445789999999887 59999999999999999999999888 677999999999998887764
|
| >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.94 E-value=1.5e-28 Score=186.50 Aligned_cols=167 Identities=20% Similarity=0.322 Sum_probs=112.6
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc----hhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~----~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
|..++|+.+|+++++++. .+++. ++|+|||+||+.+..... .+.+.+++ ++.++|+||||+|||+|+..
T Consensus 20 s~~~al~~~G~~~~~v~~----~~~l~--~~D~lIlPGG~~~~~~~~l~~~~l~~~I~~~~~~gkPiLGIClG~Qll~~~ 93 (202)
T d1q7ra_ 20 EHVRAIEACGAEAVIVKK----SEQLE--GLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKR 93 (202)
T ss_dssp HHHHHHHHTTCEEEEECS----GGGGT--TCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEE
T ss_pred HHHHHHHHCCCcEEEECC----HHHHh--cCCEEEECCCCcHHHHHHhhhhHHHHHHhhhccccceeeeeehhhHHhhhh
Confidence 578899999999999963 35555 899999999865432221 12344544 57899999999999999876
Q ss_pred hCCeeeecCCccccccceeeEEcc---------cCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcCCCceEE
Q 029484 77 FGGKIVRSPLGVMHGKSSLVYYDE---------KGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMA 147 (192)
Q Consensus 77 ~gg~v~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a 147 (192)
.++...+. .+ +....... ...+..+..++.....+++|++.+.. .++.++++|+.++. +.+
T Consensus 94 ~~~~~~~~-----lg-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~~-~~a 163 (202)
T d1q7ra_ 94 IVGYDEPH-----LG-LMDITVERNSFGRQRESFEAELSIKGVGDGFVGVFIRAPHIVE---AGDGVDVLATYNDR-IVA 163 (202)
T ss_dssp EESSCCCC-----CC-CEEEEEECHHHHCCCCCEEEEEEETTTEEEEEEEESSCCEEEE---ECTTCEEEEEETTE-EEE
T ss_pred ccccceee-----cc-cccccccccccccccccceeccccccccCCcceEEEeeccccc---cccceeEEeecCCE-EEE
Confidence 44322111 11 11111110 00122344455566677778777765 55788999988664 456
Q ss_pred EeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHHHHhhhhc
Q 029484 148 ARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAADS 190 (192)
Q Consensus 148 i~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~~~~~~ 190 (192)
++.. +++|+|||||++ .+.+++++|++.+++.++..|
T Consensus 164 ~~~g---ni~G~QFHPEkS---~~~~il~~Fl~~~~~~k~~~~ 200 (202)
T d1q7ra_ 164 ARQG---QFLGCSFHPELT---DDHRLMQYFLNMVKEAKMASS 200 (202)
T ss_dssp EEET---TEEEESSCGGGS---SCCHHHHHHHHHHHHHHHHHH
T ss_pred EEeC---CEEEEEeCCccC---CChHHHHHHHHHHHHhhhhcc
Confidence 6643 499999999996 356799999999998887765
|
| >d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: CTP synthase PyrG, C-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=7.6e-28 Score=185.17 Aligned_cols=184 Identities=20% Similarity=0.253 Sum_probs=121.3
Q ss_pred cHHHHHHhC----CCeEEEE--eCCCCC---HHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhHHH
Q 029484 2 TFLKYMGEL----GYHFEVY--RNDELT---VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQC 72 (192)
Q Consensus 2 ~l~~~l~~~----g~~~~v~--~~~~~~---~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~Q~ 72 (192)
|+.++|+.+ +.++.+. ...+.+ ..+.. .++|||+++||.|.....+.......++++++|+||||+|||+
T Consensus 21 Si~eAL~hA~~~~~~~v~i~wi~s~~l~~~~~~~~L-~~~dGIlvPGGFG~rG~eGki~ai~yARen~iPfLGIClGmQ~ 99 (250)
T d1vcoa1 21 SLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAF-RDVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLGLQI 99 (250)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHT-TTCSCEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHH
T ss_pred HHHHHHHHhHHhcCCeEEEEEEcchhcchhhHHHHH-hcCCeEEecCCCCccchHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence 566666654 5555444 332221 12222 2899999999999988888776666678899999999999999
Q ss_pred HHHHhCCeeeecCCcc-----ccccceeeEEccc--------------------CCCccccCCC--Cccccccccccccc
Q 029484 73 IGEAFGGKIVRSPLGV-----MHGKSSLVYYDEK--------------------GEDGLLAGLS--NPFTAGRYHSLVIE 125 (192)
Q Consensus 73 l~~~~gg~v~~~~~~~-----~~~~~~~~~~~~~--------------------~~~~l~~~~~--~~~~~~~~H~~~v~ 125 (192)
++..+..++..+.... +......+..-.. .+.++...+- ..+.-.+.|.|+|+
T Consensus 100 avIEfARnvlgl~~A~s~Ef~~~~~~pvi~~~~e~~~~~~~ggtmRLG~~~~~l~~~S~~~~~Y~~~~i~ERhRHRYevN 179 (250)
T d1vcoa1 100 AVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPGTLLHRLYGKEEVLERHRHRYEVN 179 (250)
T ss_dssp HHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEECTTSHHHHHHCCSEEEEEEEESEEEC
T ss_pred HHHHHHHHHHHhhcccccccCCCCCCeEEEeeccceeccccCccccccceeeeecCCcHHHhhccccEEeehcccceeec
Confidence 9997666555543110 0111111111000 0111111111 22334466888886
Q ss_pred cc---CCCCCCeEEEEEcCC------CceEEEeeCCCCceEEEeccCCCCCCC-chHHHHHHHHHHHHHHh
Q 029484 126 KE---SFPSDALEVTAWTED------GLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIVRKE 186 (192)
Q Consensus 126 ~~---~l~~~~~~~~a~s~~------~~i~ai~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~~~~~ 186 (192)
++ .|...++.+.++++| +.++++|.+++|+++|+|||||+.+.+ ...+||..|++++.+.+
T Consensus 180 ~~y~~~le~~gl~~sg~~~d~~~~~~~lvEiiEl~~HPffvgvQfHPEf~Srp~~phPLF~~fi~Aal~~k 250 (250)
T d1vcoa1 180 PLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAALAYQ 250 (250)
T ss_dssp HHHHHHHHHHTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBTTBCCHHHHHHHHHHHHHT
T ss_pred hhhhHHHHhccccccccCcccccCCCCeEEEEECCCCCcEEEecCCccccCCCCCCCccHHHHHHHHHhcC
Confidence 42 334468999999875 479999999999999999999999888 77999999999987653
|
| >d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=3.3e-26 Score=172.96 Aligned_cols=163 Identities=16% Similarity=0.112 Sum_probs=90.7
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCc------chhHHHHHH-hCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~------~~~~~~~~~-~~~~~PilGIC~G~Q~l~ 74 (192)
|+.++++.+|..+.++.....+.++.. .+|+||||| +|+..+. ..+.+.+++ +++++||||||+|||+|+
T Consensus 15 si~~al~~~g~~~~~~~~~~~~~~~~~--~~D~lIlPG-~G~f~~~~~~l~~~~~~~~i~~~~~~~~PiLGIClG~QlL~ 91 (200)
T d1k9vf_ 15 NLYRGVKRASENFEDVSIELVESPRND--LYDLLFIPG-VGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLF 91 (200)
T ss_dssp HHHHHHHHHTTTSSSCEEEEESSSCSC--CCSEEEECC-CSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTE
T ss_pred HHHHHHHHhccccccceEEEeCChHhh--ccCeEEEcC-hHHHHHHHHhhhcccccccccccccccceEEEEecceeEEe
Confidence 688899988865433221111112222 789999965 4543221 112334443 567899999999999999
Q ss_pred HHhCCee------------eecC-CccccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcC
Q 029484 75 EAFGGKI------------VRSP-LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE 141 (192)
Q Consensus 75 ~~~gg~v------------~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 141 (192)
...++.. .... ....+..|.... +.........++.|++.+.. .+......+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~hs~~~~~---~~~~~~~~~~~~ 159 (200)
T d1k9vf_ 92 EESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNEVI---------FKDTFPNGYYYFVHTYRAVC---EEEHVLGTTEYD 159 (200)
T ss_dssp EEETTSTTCCCCCCEEEEEEECSCSSCSEEEEEEEE---------ESSSSCCEEEEEEESEEEEE---CGGGEEEEEEET
T ss_pred eecccCcccccccccccccccccccccccccccccc---------ccccCCceEEEEeeeeeecc---cccceEEEEEEC
Confidence 7532211 1110 001111121111 11111334456778887754 222233322223
Q ss_pred CCc-eEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHH
Q 029484 142 DGL-IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 142 ~~~-i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 183 (192)
+.. +++++.. +++|+|||||++ +++|.+|++||++...
T Consensus 160 ~~~~~a~v~~~---ni~GvQFHPEkS-~~~G~~ll~nFl~~~~ 198 (200)
T d1k9vf_ 160 GEIFPSAVRKG---RILGFQFHPEKS-SKIGRKLLEKVIECSL 198 (200)
T ss_dssp TEEEEEEEEET---TEEEESSBGGGS-HHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEcC---CEEEEeCCCccc-chhHHHHHHHHHhhhh
Confidence 333 3455543 499999999986 6789999999998865
|
| >d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Pyridoxine biosynthesis protein 2, Pdx2 species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.89 E-value=1.6e-23 Score=159.78 Aligned_cols=170 Identities=14% Similarity=0.138 Sum_probs=98.4
Q ss_pred cHHHHHHhCCCe-EEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc------hhHHHHH-H-hCCCCCEEeeeHhHHH
Q 029484 2 TFLKYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVL-E-LGPTVPLFGVCMGLQC 72 (192)
Q Consensus 2 ~l~~~l~~~g~~-~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~------~~~~~~~-~-~~~~~PilGIC~G~Q~ 72 (192)
+..++|+.+|.. +++... .+.+++. ++|+||||||.+...... .+...+. . ...++||||||+|||+
T Consensus 16 ~~~~al~~lg~~~~~v~~~--~~~~~l~--~~D~lIlPGgg~~~~~~~~~~~~~~~~~~i~~~~~~~gkPilGIC~G~Ql 91 (218)
T d2abwa1 16 PHINHFIKLQIPSLNIIQV--RNVHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCIL 91 (218)
T ss_dssp HHHHHHHTTCCTTEEEEEE--CSHHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHH
T ss_pred HHHHHHHHcCCCceEEEEe--CCHHHHh--hCCEEEEcCCCccHHHHHHHHHhccchHHHHHHHHHcCCeEEEecHHHHH
Confidence 457889999853 333332 2367777 899999999754322111 1112222 2 4579999999999999
Q ss_pred HHHHhCCeeeecCCccccccceee------------------EEcccCCCccccCCCCcccccccccccccccCCCCCCe
Q 029484 73 IGEAFGGKIVRSPLGVMHGKSSLV------------------YYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDAL 134 (192)
Q Consensus 73 l~~~~gg~v~~~~~~~~~~~~~~~------------------~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~ 134 (192)
|+...++......... .+..... .......+.++.........++.|++.+.. .+.
T Consensus 92 L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~h~~~~~~-----~~~ 165 (218)
T d2abwa1 92 LSKNVENIKLYSNFGN-KFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFKKDLTAACIRAPYIREILS-----DEV 165 (218)
T ss_dssp TEEEEECCCSCCTTGG-GSCCCCEEEEEECCC----CCEEEEECEECCCCTTCCTTCEEEEESCCEEEEECC-----TTC
T ss_pred HHHhccCCcccccccc-ccccccccccceecccCCcccccccceeeccCCccccCcccceeEEeeEEEEeec-----CCh
Confidence 9886543332211000 0000000 000111233444333444556677777642 445
Q ss_pred EEEEEcCC-----CceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHHHHHHhh
Q 029484 135 EVTAWTED-----GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 187 (192)
Q Consensus 135 ~~~a~s~~-----~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~~~ 187 (192)
..+++..+ ..++|++.. +++|+|||||++. +.+++++|++++++.++
T Consensus 166 ~~~a~~~~~~~g~~~i~av~~~---ni~G~QFHPE~s~---d~r~~~~F~~~v~~~~~ 217 (218)
T d2abwa1 166 KVLATFSHESYGPNIIAAVEQN---NCLGTVFHPELLP---HTAFQQYFYEKVKNYKY 217 (218)
T ss_dssp EEEEEEEETTTEEEEEEEEEET---TEEEESSCGGGSS---CCHHHHHHHHHHHHHHH
T ss_pred hhheeeccccCCCeEEEEEecC---CEEEEEcCCeecC---CchHHHHHHHHHHhhhc
Confidence 56655322 237888754 4999999999862 23588999999998765
|
| >d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=1.3e-23 Score=157.11 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=93.4
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCC------CcchhHHHH-HHhCCCCCEEeeeHhHHHHH
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ------DSGISLQTV-LELGPTVPLFGVCMGLQCIG 74 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~------~~~~~~~~~-~~~~~~~PilGIC~G~Q~l~ 74 (192)
|+.++++++|+++++++. .+++. ++|++|++||+.... +.+ ....+ .....++|+||||+|||+|+
T Consensus 15 si~~~l~~lg~~~~i~~~----~~~i~--~~d~lIlpG~g~~~~~~~~~~~~~-~~~~~~~~~~~g~pilGiClG~qll~ 87 (195)
T d1ka9h_ 15 SAAKALEAAGFSVAVAQD----PKAHE--EADLLVLPGQGHFGQVMRAFQESG-FVERVRRHLERGLPFLGICVGMQVLY 87 (195)
T ss_dssp HHHHHHHHTTCEEEEESS----TTSCS--SCSEEEECCCSCHHHHHHTTSSSC-THHHHHHHHHTTCCEEECTHHHHTTS
T ss_pred HHHHHHHHCCCeEEEECC----HHHHH--HHhhhhcCCCccccchhhhccccC-Ccccccccccccchhhhhhhhhheee
Confidence 688999999999999863 23444 789999999864321 122 22333 33567899999999999998
Q ss_pred HHhC------------CeeeecCCc-cccccceeeEEcccCCCccccCCCCcccccccccccccccCCCCCCeEEEEEcC
Q 029484 75 EAFG------------GKIVRSPLG-VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE 141 (192)
Q Consensus 75 ~~~g------------g~v~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 141 (192)
.... +++...... ..+..+..... ...... ......++.|++.+.. . +.....++..
T Consensus 88 ~~~~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~---~-~~~~~~~~~~ 157 (195)
T d1ka9h_ 88 EGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGWNALEF-----GGAFAP-LTGRHFYFANSYYGPL---T-PYSLGKGEYE 157 (195)
T ss_dssp SEETTSTTCCCCCSSSSEEEECCSSSSSEEEEEECEE-----CGGGGG-GTTCEEEEEESEECCC---C-TTCCEEEEET
T ss_pred eccccccccCCceeeeccccccccccccccccccccc-----cccccc-ccccccccccceeeec---c-ccceeeeecC
Confidence 6421 111111100 00111111111 001111 1223455667776653 2 3333334433
Q ss_pred CC-ceEEEeeCCCCceEEEeccCCCCCCCchHHHHHHHHHH
Q 029484 142 DG-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 181 (192)
Q Consensus 142 ~~-~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 181 (192)
+. .+++++.+ ++||+|||||++ +..|.+|++||+++
T Consensus 158 ~~~~~a~v~~~---ni~GvQFHPEkS-~~~G~~lL~nF~~~ 194 (195)
T d1ka9h_ 158 GTPFTALLAKE---NLLAPQFHPEKS-GKAGLAFLALARRY 194 (195)
T ss_dssp TEEEEEEEECS---SEEEESSCTTSS-HHHHHHHHHHHHHH
T ss_pred CceEEEEEEcC---CEEEEeCCcccc-cHhHHHHHHHHHHh
Confidence 33 35666533 499999999987 57999999999975
|
| >d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: HTS-like domain: Homoserine O-succinyltransferase HTS (MetA) species: Bacillus cereus [TaxId: 1396]
Probab=99.84 E-value=1.4e-21 Score=153.98 Aligned_cols=153 Identities=13% Similarity=0.071 Sum_probs=108.4
Q ss_pred HHHHhccCCCeEEECCCCCCCC--CcchhHHHHHH-----hCCCCCEEeeeHhHHHHHHHhCCeeeecCCccccccceee
Q 029484 24 VEELKRKNPRGVLISPGPGAPQ--DSGISLQTVLE-----LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLV 96 (192)
Q Consensus 24 ~~~~~~~~~dglii~GG~~~~~--~~~~~~~~~~~-----~~~~~PilGIC~G~Q~l~~~~gg~v~~~~~~~~~~~~~~~ 96 (192)
.+++...+|||+||+|+|.+.. +..+|...+.+ ....+|+||||+|+|+++.++||.+.+...+...|.....
T Consensus 76 ~~~i~~~~fDglIITGap~~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~lgGi~k~~~~~k~~Gv~~~~ 155 (281)
T d2ghra1 76 FRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMFGVFEHE 155 (281)
T ss_dssp HHHHTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEE
T ss_pred HHHhhcccCCEEEEeCCCCCcccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHHhCCCccccCCCceEEEEEEe
Confidence 4556666899999999998874 44455544332 3467999999999999999999988776433334444333
Q ss_pred EEcccCCCccccCCCCcccccccccccccccCC-CCCCeEEEEEcCCCceEEEeeCCCCceEEEeccCCCCCCCchHHHH
Q 029484 97 YYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV 175 (192)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~i~ai~~~~~~~~~g~QfHPE~~~~~~~~~l~ 175 (192)
... ..++++.++++.+.+..+|.-.+..+.+ ..++..+++.|+++.+.++...+.+ ++++|+|||+. ...|.
T Consensus 156 ~~~--~~~pL~~g~~d~f~~p~Sr~~~~~~d~v~~~p~l~vLa~S~~~g~~~~~~~~~~-~~~iQgHPEYd----~~tL~ 228 (281)
T d2ghra1 156 VRE--QHVKLLQGFDELFFAPHSRHTEVRESDIREVKELTLLANSEEAGVHLVIGQEGR-QVFALGHSEYS----CDTLK 228 (281)
T ss_dssp ECC--SSCGGGTTCCSEEEEEEEEEEECCHHHHHTCTTEEEEEEETTTEEEEEEEGGGT-EEEECSCTTCC----TTHHH
T ss_pred ecc--CCChhccCCcchhheeeeecccCCHHHHhhCCCceEEeecCCcccEEEEECCCC-EEEEeCCCCcc----hhHHH
Confidence 322 3678999999999988888644432211 2357888999988887778777765 99999999995 44555
Q ss_pred HHHHHHHH
Q 029484 176 RNFIKMIV 183 (192)
Q Consensus 176 ~~f~~~~~ 183 (192)
+++.+.+.
T Consensus 229 ~EY~RD~~ 236 (281)
T d2ghra1 229 QEYERDRD 236 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
|
| >d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: FGAM synthase PurL, amidotransferase domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.66 E-value=2.2e-16 Score=122.63 Aligned_cols=178 Identities=19% Similarity=0.224 Sum_probs=110.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcch---hH----------HHHHH-h-CCCCCEEeee
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI---SL----------QTVLE-L-GPTVPLFGVC 67 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~---~~----------~~~~~-~-~~~~PilGIC 67 (192)
.+.+++.+|++++.++..+.-..+....+||+|+++||.+.-+.... +. ..+.+ + ..++|+||||
T Consensus 23 ~~~Af~~aG~~~~~v~~~dl~~~~~~L~~~~~lvipGGFSygD~l~ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGIC 102 (262)
T d1t3ta2 23 MAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVC 102 (262)
T ss_dssp HHHHHHHTTCEEEEEEHHHHHHTSCCGGGCSEEEECCBCGGGGTTSTTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEET
T ss_pred HHHHHHHcCCceEEEEeeecccCcccccccceEEEeccccccccccchhHHHhhhhhhhHHHHHHHHHhhcCCceEEeec
Confidence 46789999999999986321111112238999999999776554321 11 11111 1 5689999999
Q ss_pred HhHHHHHHH--h-CC-----eeeecCCccccccceeeEEcccCCCccccCCC-Cccccccccccc---cccc----CCCC
Q 029484 68 MGLQCIGEA--F-GG-----KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLV---IEKE----SFPS 131 (192)
Q Consensus 68 ~G~Q~l~~~--~-gg-----~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~---v~~~----~l~~ 131 (192)
.|||+|.+. + .+ ++..+........|..+.... .++.+++.+. ..+.++..|+.. +..+ .|..
T Consensus 103 NGfQiL~elg~l~pg~~~~~~~~~N~s~rfe~rw~~~~v~~-~~s~~~~~~~g~~l~ipiaHgEG~f~~~~~~~l~~L~~ 181 (262)
T d1t3ta2 103 NGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFSLVEVTQ-SPSLLLQGMVGSQMPIAVSHGEGRVEVRDDAHLAALES 181 (262)
T ss_dssp HHHHHHHTTGGGSTTCTTCCEEECCTTSSCEEEEEEEEECC-CSCGGGTTCTTCEEEEEEEESSCEEECSSHHHHHHHHH
T ss_pred hHHHHHHHhcccCCCcccCcccccccCCeEEEEEeeecccc-ccChhhccCCCcceEeeeecCCCCcccCCHHHHHHhhh
Confidence 999999985 2 22 244444444444555555543 3566777765 446666667544 2211 2222
Q ss_pred CCeEEEEEc-------------CCC---ceEEEeeCCCCceEEEeccCCCCCCC--------------chHHHHHHHHHH
Q 029484 132 DALEVTAWT-------------EDG---LIMAARHKKYKHLQGVQFHPESIITT--------------EGKTIVRNFIKM 181 (192)
Q Consensus 132 ~~~~~~a~s-------------~~~---~i~ai~~~~~~~~~g~QfHPE~~~~~--------------~~~~l~~~f~~~ 181 (192)
.+...+... +++ .|++|++.+++ ++|+++||||...+ ++..||+|-++.
T Consensus 182 ~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IAGIcs~~Gr-vlgmMPHPER~~~~~q~~~~~~~~~~~spw~~iF~na~~~ 260 (262)
T d1t3ta2 182 KGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGR-VTIMMPHPERVFRTVANSWHPENWGEDSPWMRIFRNARKQ 260 (262)
T ss_dssp TTCEEEEEBCTTSCBCCSTTTSSSCCGGGEEEEECTTSS-EEEESSBGGGSSBGGGCSSCCTTCCSBCTTHHHHHHHHHH
T ss_pred ccceEEEEEcCCCccccccCCCCCCCccceeEEECCCCC-EEEEcCChhHhhhccccCcCCcccCCCChHHHHHHHHHHh
Confidence 334443332 222 39999999986 99999999996421 357788887776
Q ss_pred H
Q 029484 182 I 182 (192)
Q Consensus 182 ~ 182 (192)
+
T Consensus 261 v 261 (262)
T d1t3ta2 261 L 261 (262)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) species: Escherichia coli [TaxId: 562]
Probab=98.18 E-value=5.2e-07 Score=67.34 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=55.3
Q ss_pred HHHHHHhCCCeEEEEeCCCC--------------------------------CHHHHhccCCCeEEECCCCCCCCCc---
Q 029484 3 FLKYMGELGYHFEVYRNDEL--------------------------------TVEELKRKNPRGVLISPGPGAPQDS--- 47 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~--------------------------------~~~~~~~~~~dglii~GG~~~~~~~--- 47 (192)
....|+++|+++.++..+.. +.+++...+||+|+++||.+...+.
T Consensus 25 ~~~~L~raG~~v~~~sp~~~~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~~v~~~~yDaliiPGG~g~~~~l~~~ 104 (217)
T d1vhqa_ 25 TLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNF 104 (217)
T ss_dssp HHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHHHTSBCH
T ss_pred HHHHHHHCCCEEEEEecCCCccceeccCCCcccccccceeeeeeeeeccccCChHHCCHhHCCEEEecCCcccHHHHhhh
Confidence 45678999999999865321 2344444589999999998864322
Q ss_pred ----------chhHHHHHH-hCCCCCEEeeeHhHHHHHHHhC
Q 029484 48 ----------GISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 78 (192)
Q Consensus 48 ----------~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~g 78 (192)
..+.+.+++ .++++|+-+||.|-++|+.+.+
T Consensus 105 ~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~ 146 (217)
T d1vhqa_ 105 ASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD 146 (217)
T ss_dssp HHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred hccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhc
Confidence 223455554 5689999999999999999854
|
| >d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Intracellular protease species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.86 E-value=5.6e-06 Score=58.76 Aligned_cols=73 Identities=14% Similarity=0.230 Sum_probs=51.7
Q ss_pred HHHHHhCCCeEEEEeCCC--------------CCHHHHhccCCCeEEECCCCCCCC--CcchhHHHHHH-hCCCCCEEee
Q 029484 4 LKYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPLFGV 66 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~--------------~~~~~~~~~~~dglii~GG~~~~~--~~~~~~~~~~~-~~~~~PilGI 66 (192)
.+.|+++|+++.++..+. .+.+++...+||+||++||++... ......+.+++ .++++||.+|
T Consensus 20 ~~~l~~ag~~v~~vs~~~~~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~~~~~~~~~~~~~~~l~~~~~~~k~i~ai 99 (166)
T d1g2ia_ 20 YHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASI 99 (166)
T ss_dssp HHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHCCCEEEEEeCCCceEeecCCcEEeccccHHHcCcccccEEEEecccchhhhccChHHHHHHHHHHhcCCeeeec
Confidence 467888999998886531 123333334799999999975422 22344555554 5688999999
Q ss_pred eHhHHHHHHH
Q 029484 67 CMGLQCIGEA 76 (192)
Q Consensus 67 C~G~Q~l~~~ 76 (192)
|.|..+|+++
T Consensus 100 C~G~~~La~a 109 (166)
T d1g2ia_ 100 CHGPQILISA 109 (166)
T ss_dssp TTTTHHHHHH
T ss_pred cccchhhhhc
Confidence 9999999997
|
| >d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein YhbO species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=9e-06 Score=57.99 Aligned_cols=74 Identities=14% Similarity=0.227 Sum_probs=50.6
Q ss_pred HHHHHHhCCCeEEEEeCC----------------CCCHHHHhccCCCeEEECCCCCCCC--CcchhHHHHHH-hCCCCCE
Q 029484 3 FLKYMGELGYHFEVYRND----------------ELTVEELKRKNPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPL 63 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~----------------~~~~~~~~~~~~dglii~GG~~~~~--~~~~~~~~~~~-~~~~~Pi 63 (192)
..+.|+.+|+++.++... +.+.+++...+||+||++||.+... .....++.+++ ..+++||
T Consensus 20 ~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~~~~~l~~~~~~~~~i~~~~~~~k~i 99 (170)
T d1oi4a1 20 PADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPV 99 (170)
T ss_dssp HHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccchhhhhhccChHHHHHHHHHhhcCCee
Confidence 356788889988777542 1112333334799999999964322 23344555555 5689999
Q ss_pred EeeeHhHHHHHHH
Q 029484 64 FGVCMGLQCIGEA 76 (192)
Q Consensus 64 lGIC~G~Q~l~~~ 76 (192)
.+||-|-.+|+.+
T Consensus 100 ~aiC~g~~~La~~ 112 (170)
T d1oi4a1 100 FAICHGPQLLISA 112 (170)
T ss_dssp EEETTTHHHHHHH
T ss_pred eecccchHHHhhh
Confidence 9999999999986
|
| >d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein Atu0886 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.74 E-value=1.5e-05 Score=57.84 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=50.9
Q ss_pred HHHHHHh-CCCeEEEEeCCCCC--------------HHHHhccCCCeEEECCCCCCC-CCcchhHHHHHH-hCCCCCEEe
Q 029484 3 FLKYMGE-LGYHFEVYRNDELT--------------VEELKRKNPRGVLISPGPGAP-QDSGISLQTVLE-LGPTVPLFG 65 (192)
Q Consensus 3 l~~~l~~-~g~~~~v~~~~~~~--------------~~~~~~~~~dglii~GG~~~~-~~~~~~~~~~~~-~~~~~PilG 65 (192)
++..++. .|+++.++..+..+ .+++...+||.|||+||.+.. .....+.+.+++ .++++||.+
T Consensus 20 ~~~~l~~~~g~~v~~vs~~~~~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~~~~~~~~~~l~~~lr~~~~~~~~i~a 99 (188)
T d2fexa1 20 LAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAG 99 (188)
T ss_dssp HHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHhhcCCcEEEEEeCCCCcEEcCCCCEEeecCchHHCChhhccEEEecCCccccccccHHHHHHHHHHHHhCCEEEE
Confidence 4566765 79999988765322 233333479999999986532 222335555554 467899999
Q ss_pred eeHhHHHHHHH
Q 029484 66 VCMGLQCIGEA 76 (192)
Q Consensus 66 IC~G~Q~l~~~ 76 (192)
||-|-.+|+.+
T Consensus 100 iC~g~~~La~a 110 (188)
T d2fexa1 100 ICAAASALGGT 110 (188)
T ss_dssp ETHHHHHHHHT
T ss_pred ecchhHHHHHc
Confidence 99999999885
|
| >d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Catalase, C-terminal domain domain: Catalase, C-terminal domain species: Escherichia coli, HPII [TaxId: 562]
Probab=97.70 E-value=4.5e-06 Score=58.75 Aligned_cols=75 Identities=16% Similarity=0.082 Sum_probs=51.2
Q ss_pred cHHHHHHhCCCeEEEEeCCCC--------------CHHHHhccCCCeEEECCCCCCC-CCcchhHHHHHH-hCCCCCEEe
Q 029484 2 TFLKYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-QDSGISLQTVLE-LGPTVPLFG 65 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~--------------~~~~~~~~~~dglii~GG~~~~-~~~~~~~~~~~~-~~~~~PilG 65 (192)
.+.+.|++.|+++.++..... +.++....+||+|||+||.+.. ......++.+++ +..++||-+
T Consensus 21 ~~~~~l~~ag~~v~~v~~~~~~v~~~~G~~i~~d~t~~~~~~~~yDaliiPGG~~~~l~~~~~~~~~i~e~~~~~K~I~a 100 (156)
T d1p80a1 21 AILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNIADIADNGDANYYLMEAYKHLKPIAL 100 (156)
T ss_dssp HHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCSCTHHHHTCHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHCCCEEEEEecccccccccceeEEeeeeeeccCCcccCCEEEeeCCchHHHhcchHHHHHHHHHHHcCCeEEE
Confidence 356788899999988865321 1222222379999999985432 122334555554 678899999
Q ss_pred eeHhHHHHHHH
Q 029484 66 VCMGLQCIGEA 76 (192)
Q Consensus 66 IC~G~Q~l~~~ 76 (192)
||-|.++|+.+
T Consensus 101 ic~g~~~La~a 111 (156)
T d1p80a1 101 AGDARKFKATI 111 (156)
T ss_dssp EGGGGGGGGTT
T ss_pred ECchHHHHHHc
Confidence 99999999876
|
| >d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: GK2698 ortholog species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.68 E-value=1.8e-05 Score=58.78 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=50.9
Q ss_pred HHHHHhCCCeEEEEeCCCC---------------------------CHHHHhccCCCeEEECCCCCCCC---CcchhHHH
Q 029484 4 LKYMGELGYHFEVYRNDEL---------------------------TVEELKRKNPRGVLISPGPGAPQ---DSGISLQT 53 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~---------------------------~~~~~~~~~~dglii~GG~~~~~---~~~~~~~~ 53 (192)
...|+++|++|.+...... +..++...+||+|+|+||.+... +...+.+.
T Consensus 32 ~~~l~~aG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~dYd~v~iPGG~g~~~~l~~~~~l~~l 111 (221)
T d1u9ca_ 32 YLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYV 111 (221)
T ss_dssp HHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHH
T ss_pred HHHHHHCCCEEEEEecCCCcceeccCccccccchhHHHHHHhhCCCChhHCCHhHCCEEEeCCCCchhhcchhhHHHHHH
Confidence 3578999999999975210 12233334799999999987432 33334455
Q ss_pred HHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 54 VLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 54 ~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
++. .++++||.+||.|-++|..+
T Consensus 112 i~~~~~~~k~iaAIChgp~~l~~a 135 (221)
T d1u9ca_ 112 LQQFAEDGRIIAAVCHGPSGLVNA 135 (221)
T ss_dssp HHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHhccCcceeecccceeeecc
Confidence 554 56899999999999888764
|
| >d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: DJ-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=1.4e-05 Score=57.66 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=51.9
Q ss_pred HHHHHHhCCCeEEEEeCCCC---------------CHHHHhc-cCCCeEEECCCCCCCC---CcchhHHHHHH-hCCCCC
Q 029484 3 FLKYMGELGYHFEVYRNDEL---------------TVEELKR-KNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVP 62 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~---------------~~~~~~~-~~~dglii~GG~~~~~---~~~~~~~~~~~-~~~~~P 62 (192)
....|+++|+++.++..... +.+++.. .+||+|+|+||.+.+. +...+.+.+++ .++++|
T Consensus 20 p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~~~~~l~~~~~l~~~lr~~~~~~k~ 99 (186)
T d1p5fa_ 20 PVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGL 99 (186)
T ss_dssp HHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCccccccccchHHHHHHHHHhhccccc
Confidence 35778999999998875321 1233332 3799999999965432 22334455554 568899
Q ss_pred EEeeeHhHHHHHHH
Q 029484 63 LFGVCMGLQCIGEA 76 (192)
Q Consensus 63 ilGIC~G~Q~l~~~ 76 (192)
|.+||.|..+|+++
T Consensus 100 i~aiC~G~~~La~a 113 (186)
T d1p5fa_ 100 IAAICAGPTALLAH 113 (186)
T ss_dssp EEEETTTHHHHHHT
T ss_pred eeecccCcchhhhc
Confidence 99999999999986
|
| >d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Catalase, C-terminal domain domain: Catalase, C-terminal domain species: Neurospora crassa [TaxId: 5141]
Probab=97.60 E-value=1.6e-05 Score=57.13 Aligned_cols=74 Identities=14% Similarity=0.120 Sum_probs=52.2
Q ss_pred HHHHHHhCCCeEEEEeCCCCC--------------HHHHhccCCCeEEECCCCCCCC---CcchhHHHHHH-hCCCCCEE
Q 029484 3 FLKYMGELGYHFEVYRNDELT--------------VEELKRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLF 64 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~--------------~~~~~~~~~dglii~GG~~~~~---~~~~~~~~~~~-~~~~~Pil 64 (192)
+.+.|+++|+++.++.....+ ..+....+||+++++||..... ......+.+++ ..+++||.
T Consensus 22 ~~~~l~~ag~~v~ivs~~~~~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~~~~~~~~~~~~~~l~~~~~~~k~i~ 101 (184)
T d1sy7a1 22 AYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIG 101 (184)
T ss_dssp HHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHCCCEEEEEEecCCcccccccccccccccccccccccceEEEEeeccccccccccccchhHHHHHHHhcCCceE
Confidence 467789999999988653211 2222333789999999965432 23344555554 56899999
Q ss_pred eeeHhHHHHHHH
Q 029484 65 GVCMGLQCIGEA 76 (192)
Q Consensus 65 GIC~G~Q~l~~~ 76 (192)
+||.|.++|+.+
T Consensus 102 aic~G~~~La~a 113 (184)
T d1sy7a1 102 ATGEAVDLVAKA 113 (184)
T ss_dssp EETTHHHHHHHH
T ss_pred EechHHHHHHHc
Confidence 999999999997
|
| >d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Protein ThiJ (YajL) species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=2.4e-05 Score=57.05 Aligned_cols=73 Identities=11% Similarity=0.140 Sum_probs=50.2
Q ss_pred HHHHHhCCCeEEEEeCC-----------------CCCHHHHhccCCCeEEECCCCCCCC---CcchhHHHHHH-hCCCCC
Q 029484 4 LKYMGELGYHFEVYRND-----------------ELTVEELKRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVP 62 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~-----------------~~~~~~~~~~~~dglii~GG~~~~~---~~~~~~~~~~~-~~~~~P 62 (192)
...|+.+|+++.++... +.+.+++...+||+||++||.+... +...+.+.+++ .++++|
T Consensus 21 ~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~~~~~l~~~~~l~~~lr~~~~~gk~ 100 (195)
T d2ab0a1 21 IDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRI 100 (195)
T ss_dssp HHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccCccccccccHHHHHHHHHHhhccce
Confidence 46788899988877542 1224455555899999999965332 23344555654 468999
Q ss_pred EEeeeHh-HHHHHHH
Q 029484 63 LFGVCMG-LQCIGEA 76 (192)
Q Consensus 63 ilGIC~G-~Q~l~~~ 76 (192)
|.+||-| ..+|+.+
T Consensus 101 i~aiC~g~a~lLa~a 115 (195)
T d2ab0a1 101 VAAICAAPATVLVPH 115 (195)
T ss_dssp EEEETHHHHHHTTTT
T ss_pred eeeeeccchhhhhhc
Confidence 9999999 6777665
|
| >d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: Hypothetical protein Ydr533Cp species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.10 E-value=0.00016 Score=54.11 Aligned_cols=49 Identities=16% Similarity=0.122 Sum_probs=35.4
Q ss_pred hccCCCeEEECCCCCCCCC---cchhHHHHHH-hCCCCCEEeeeHhHHHHHHH
Q 029484 28 KRKNPRGVLISPGPGAPQD---SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 28 ~~~~~dglii~GG~~~~~~---~~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~ 76 (192)
...+||+|+++||.+...+ ...+.+.++. .++++||-+||.|-.+|..+
T Consensus 94 ~~~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~ 146 (236)
T d1qvwa_ 94 NADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGL 146 (236)
T ss_dssp CGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred CHhHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHH
Confidence 3347999999999875332 2234455554 57899999999999877654
|
| >d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: DJ-1/PfpI domain: HSP31 (HchA; YedU) species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.0015 Score=49.71 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=35.3
Q ss_pred CCCeEEECCCCCCCCCc---chhHHHHHH-hCCCCCEEeeeHhHHHHHHHh
Q 029484 31 NPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 77 (192)
Q Consensus 31 ~~dglii~GG~~~~~~~---~~~~~~~~~-~~~~~PilGIC~G~Q~l~~~~ 77 (192)
+||+|+++||.|...+. ..+.+.++. .++++||..||.|=..|..+.
T Consensus 141 dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a~ 191 (279)
T d1n57a_ 141 EYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR 191 (279)
T ss_dssp SEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred cccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhcc
Confidence 79999999998865443 234445544 578999999999998887653
|
| >d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: NAD kinase/diacylglycerol kinase-like superfamily: NAD kinase/diacylglycerol kinase-like family: NAD kinase-like domain: Inorganic polyphosphate/ATP-NAD kinase PpnK species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.12 E-value=0.01 Score=44.25 Aligned_cols=57 Identities=25% Similarity=0.382 Sum_probs=42.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEEeeeHhH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 70 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 70 (192)
+.++|++.+.++.++.. +.+++. ++|.+|..||.| .+++..+.+...+|||||-.|.
T Consensus 16 i~e~l~~~~~~~~~~~~---~~~~~~--~~D~vi~iGGDG------T~L~a~~~~~~~~PilGIn~G~ 72 (249)
T d1z0sa1 16 IEEALKRLEVEVELFNQ---PSEELE--NFDFIVSVGGDG------TILRILQKLKRCPPIFGINTGR 72 (249)
T ss_dssp HHHHHHHTTCEEEEESS---CCGGGG--GSSEEEEEECHH------HHHHHHTTCSSCCCEEEEECSS
T ss_pred HHHHHHhcCCeEEEecC---cccccc--CCCEEEEECCcH------HHHHHHHHhcCCCcEEEECccc
Confidence 56789999999988853 233444 789999999944 4566666666778999999875
|
| >d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: ThuA-like domain: GK2113 homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.15 E-value=1 Score=32.48 Aligned_cols=173 Identities=12% Similarity=0.021 Sum_probs=86.3
Q ss_pred HHHHHHhCCCeEEEEeCCCC----CHHHHhccCCCeEEECCCCCCCCCcchhHHHHHH-hCCCCCEEeeeHhHHH--HHH
Q 029484 3 FLKYMGELGYHFEVYRNDEL----TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQC--IGE 75 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~----~~~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~-~~~~~PilGIC~G~Q~--l~~ 75 (192)
|++.|++.|+++.+...++. +.+.|. ++|.||+.+-.+.........+.+.+ +.+|.+++|+=.|.-. -..
T Consensus 32 ia~~l~~~g~~v~tat~~e~~~~~~~~~L~--~~Dvli~~~~~~~~~l~~~q~~al~~~v~~G~G~VglH~a~~~~~~~~ 109 (240)
T d1t0ba_ 32 IASYLAEAGFDAATAVLDEPEHGLTDEVLD--RCDVLVWWGHIAHDEVKDEVVERVHRRVLEGMGLIVLHSGHFSKIFKK 109 (240)
T ss_dssp HHHHHHHTTCEEEEEESSSGGGGCCHHHHH--TCSEEEEECSSCGGGSCHHHHHHHHHHHHTTCEEEEEGGGGGSHHHHH
T ss_pred HHHHhhcCCceEEEEEecCccccCCHHHHh--cCCEEEEeCCCCCCcCCHHHHHHHHHHHHcCCCEEEEecCcCCCchHH
Confidence 56788999999988654322 234444 89999987543322222333344443 6789999998655421 122
Q ss_pred HhCCeeeecCCccccccceeeEEcccCCCccccCCCCccccc--ccccccccccCCCCCCeEEEEEc-CCCc---eEEE-
Q 029484 76 AFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAG--RYHSLVIEKESFPSDALEVTAWT-EDGL---IMAA- 148 (192)
Q Consensus 76 ~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~H~~~v~~~~l~~~~~~~~a~s-~~~~---i~ai- 148 (192)
.+|+...... ...+....+.. ...++++.++++..+... .++...... +.....++.+. ..+. +.-.
T Consensus 110 ~~Gg~~~~~~--h~~~~~~~v~v-~d~~HPi~~gl~~~~~~~~e~~y~~~~~~---~~~~~~~~~~~~~~~~~~p~~W~~ 183 (240)
T d1t0ba_ 110 LMGTTCNLKW--READEKERLWV-VAPGHPIVEGIGPYIELEQEEMYGEFFDI---PEPDETIFISWFEGGEVFRSGCTF 183 (240)
T ss_dssp HHCSCCCCEE--EEEEEEEEEEE-SCTTSGGGTTCCSEEEEEEEEEEESCCCS---CCCSEEEEEEEETTSCEEEEEEEE
T ss_pred HhCCcccccc--CCCCcEEEEEe-cCCCChhHcCCCCceeccceeEeccccCC---CCCceeEEEEeccCCCcceEEEEE
Confidence 4554221111 11222222322 345789999998755432 111111111 22233333333 2332 3322
Q ss_pred eeCCCCceEEEeccCC--CCCCCchHHHHHHHHHHHH
Q 029484 149 RHKKYKHLQGVQFHPE--SIITTEGKTIVRNFIKMIV 183 (192)
Q Consensus 149 ~~~~~~~~~g~QfHPE--~~~~~~~~~l~~~f~~~~~ 183 (192)
+..+++-+|....|-+ ....++=++++.+=+..++
T Consensus 184 ~~g~GRvfyt~lGH~~~~~~~~~~f~~ll~~gi~Waa 220 (240)
T d1t0ba_ 184 TRGKGKIFYFRPGHETYPTYHHPDVLKVIANAVRWAA 220 (240)
T ss_dssp EETTEEEEEECCCCTTSCGGGCHHHHHHHHHHHHHHC
T ss_pred EeCCCCEEEECCCCCCccccCCHHHHHHHHHHHHHhc
Confidence 2233445788889944 3223344555555555444
|
| >d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: NAD kinase/diacylglycerol kinase-like superfamily: NAD kinase/diacylglycerol kinase-like family: NAD kinase-like domain: Inorganic polyphosphate/ATP-NAD kinase PpnK species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.30 E-value=0.047 Score=41.65 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=38.6
Q ss_pred HHHHHHhCCCeEEEEeCCCCCH----------------------HHHhccCCCeEEECCCCCCCCCcchhHHHHHHh-CC
Q 029484 3 FLKYMGELGYHFEVYRNDELTV----------------------EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GP 59 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~----------------------~~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~ 59 (192)
+.++|++.|+++.+......+. .+....++|.+|..||.| .+++..+.+ ..
T Consensus 21 i~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGGDG------T~L~a~~~~~~~ 94 (302)
T d1u0ta_ 21 VEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGGDG------TFLRAAELARNA 94 (302)
T ss_dssp HHHHHHTTTCEEEEEC-----------------------------------CCCEEEEECHH------HHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEecchhcccccccCchhhhhcCcccccccccccccccccEEEEEcCCh------HHHHHHHHhhcc
Confidence 6789999999998764211100 001112579999999944 456666543 35
Q ss_pred CCCEEeeeHhH
Q 029484 60 TVPLFGVCMGL 70 (192)
Q Consensus 60 ~~PilGIC~G~ 70 (192)
++|||||-.|.
T Consensus 95 ~~PilGin~G~ 105 (302)
T d1u0ta_ 95 SIPVLGVNLGR 105 (302)
T ss_dssp TCCEEEEECSS
T ss_pred CCeEEEeCCCc
Confidence 79999999984
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=91.11 E-value=0.25 Score=30.26 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=37.0
Q ss_pred CcHHHHHHhCCCeEEEEeCCCCCH--H--------------HHhccCCCeEEECCCCCCCCCcchhHHHHHHhCCCCCEE
Q 029484 1 MTFLKYMGELGYHFEVYRNDELTV--E--------------ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 64 (192)
Q Consensus 1 ~~l~~~l~~~g~~~~v~~~~~~~~--~--------------~~~~~~~dglii~GG~~~~~~~~~~~~~~~~~~~~~Pil 64 (192)
++++++|.+.|.+|.+......+. + +....++|.+|+|+|-. . ..++++.. .++++||+
T Consensus 18 ~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SPGi~--~-~~~~~~~a--~~~gi~ii 92 (93)
T d2jfga1 18 LSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIA--L-AHPSLSAA--ADAGIEIV 92 (93)
T ss_dssp HHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECTTSC--T-TSHHHHHH--HHTTCEEE
T ss_pred HHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECCCCC--C-CCHHHHHH--HHcCCCeE
Confidence 468899999999999986522111 0 00112688999998742 1 22333333 34679998
Q ss_pred e
Q 029484 65 G 65 (192)
Q Consensus 65 G 65 (192)
|
T Consensus 93 G 93 (93)
T d2jfga1 93 G 93 (93)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >d2nqra3 c.57.1.2 (A:178-326) MoeA, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Molybdenum cofactor biosynthesis proteins superfamily: Molybdenum cofactor biosynthesis proteins family: MoeA central domain-like domain: MoeA, central domain species: Escherichia coli [TaxId: 562]
Probab=88.92 E-value=0.4 Score=32.25 Aligned_cols=53 Identities=13% Similarity=0.059 Sum_probs=33.3
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhc------cCCCeEEECCCCCCCCCcchhHHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSGISLQTVLE 56 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~------~~~dglii~GG~~~~~~~~~~~~~~~~ 56 (192)
|..++++.|+++.....-..+.+++.. .++|.||.+||. +..+.+...+.+.+
T Consensus 32 l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DivittGG~-s~g~~D~~~~~l~~ 90 (149)
T d2nqra3 32 VHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGV-SVGEADYTKTILEE 90 (149)
T ss_dssp HHHHHHHTTCEEEEEEEECSSHHHHHHHHHHHHHHCSEEEECSSS-CSSSCSHHHHHHHH
T ss_pred HHhhhhhcceEEEEccccCChHHHHHHHHHhcccccCEEEEcCCc-cCCchHHHHHHHHH
Confidence 667899999998776432233444422 169999999995 44444444444443
|
| >d2gk3a1 c.23.16.9 (A:8-253) Putative cytoplasmic protein STM3548 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: STM3548-like domain: Putative cytoplasmic protein STM3548 species: Salmonella typhimurium [TaxId: 90371]
Probab=88.27 E-value=2 Score=30.99 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=28.1
Q ss_pred HHHHHHhCCCeEEEEeCC------CCCHHHHhccCCCeEEECCCCC
Q 029484 3 FLKYMGELGYHFEVYRND------ELTVEELKRKNPRGVLISPGPG 42 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~------~~~~~~~~~~~~dglii~GG~~ 42 (192)
|.++|+..|++|+..+.+ ..+.+++. +||+|||+..+.
T Consensus 35 l~~aL~~~~~~v~~~~~~~~~~~fP~~~~~l~--~yDvvIl~D~~a 78 (246)
T d2gk3a1 35 LLECLRKGGVDIDYMPAHTVQIAFPESIDELN--RYDVIVISDIGS 78 (246)
T ss_dssp HHHHHHHTTCEEEEECHHHHHHCCCCSHHHHH--TCSEEEEESCCH
T ss_pred HHHHHHhCCceEEEecchhhhhhCccCHHHHh--cCCEEEEecCch
Confidence 678899999999997642 12345555 899999987543
|
| >d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Megasphaera elsdenii [TaxId: 907]
Probab=83.41 E-value=2.5 Score=27.06 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=28.9
Q ss_pred HHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECC
Q 029484 3 FLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 39 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~G 39 (192)
|++.+++.|+++++++..+.+.+++. ++|++|+..
T Consensus 20 ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~ii~g~ 54 (137)
T d2fz5a1 20 IEAAVKAAGADVESVRFEDTNVDDVA--SKDVILLGC 54 (137)
T ss_dssp HHHHHHHTTCCEEEEETTSCCHHHHH--TCSEEEEEC
T ss_pred HHHHHHhcCCceEEeehhhHHHhhhh--ccceEEEEE
Confidence 67788899999999998888888887 788877654
|
| >d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: NAD kinase/diacylglycerol kinase-like superfamily: NAD kinase/diacylglycerol kinase-like family: Diacylglycerol kinase-like domain: Lipid kinase YegS species: Escherichia coli [TaxId: 562]
Probab=81.62 E-value=0.73 Score=34.09 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=41.5
Q ss_pred HHHHHHhCCCeEEEEeCCCCC-HHHH----hccCCCeEEECCCCCCCCCcchhHHHHHHh-CCCCCEEee--eHhHHHHH
Q 029484 3 FLKYMGELGYHFEVYRNDELT-VEEL----KRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV--CMGLQCIG 74 (192)
Q Consensus 3 l~~~l~~~g~~~~v~~~~~~~-~~~~----~~~~~dglii~GG~~~~~~~~~~~~~~~~~-~~~~PilGI--C~G~Q~l~ 74 (192)
+.+.|+++|+++++....... ..++ ...++|.|++.||.|+.. ..+..+.+. ...+|.||| |.=.-.++
T Consensus 20 ~~~~l~~~g~~~~v~~T~~~g~a~~~~~~~~~~~~d~Ivv~GGDGTv~---ev~~gl~~~~~~~~p~lgilP~GTgN~~A 96 (295)
T d2bona1 20 AIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTIN---EVSTALIQCEGDDIPALGILPLGTANDFA 96 (295)
T ss_dssp HHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHHH---HHHHHHHHCCSSCCCEEEEEECSSSCHHH
T ss_pred HHHHHHHCCCEEEEEEcCCcchHHHHHHHHHhcCCCEEEEECCCcHHH---HHHHHHHhccCCCCceEEEEECCcccchH
Confidence 456789999999888753222 2222 223799999999977431 122233332 234677776 22233444
Q ss_pred HHhC
Q 029484 75 EAFG 78 (192)
Q Consensus 75 ~~~g 78 (192)
..+|
T Consensus 97 r~lg 100 (295)
T d2bona1 97 TSVG 100 (295)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 5444
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=80.26 E-value=2.5 Score=26.74 Aligned_cols=64 Identities=17% Similarity=0.289 Sum_probs=41.9
Q ss_pred cHHHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCCcc-hhHHHHHHhCCCCCEEeee
Q 029484 2 TFLKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGVC 67 (192)
Q Consensus 2 ~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~~~-~~~~~~~~~~~~~PilGIC 67 (192)
.+.+.|+..|+++..........+.+....+|.+|+== ..|...| .+.+.+++.....||+-+.
T Consensus 18 ~l~~~L~~~g~~v~~a~~~~~a~~~l~~~~~dlii~D~--~mp~~~G~el~~~l~~~~~~~piI~~t 82 (123)
T d1krwa_ 18 VLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDI--RMPGMDGLALLKQIKQRHPMLPVIIMT 82 (123)
T ss_dssp HHHHHHHHTTCEEEEESSSHHHHHHHTTCCCSEEEECC--SSSSSTTHHHHHHHHHHSSSCCEEESC
T ss_pred HHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEehh--hcCCchHHHHHHHHHHhCCCCeEEEEe
Confidence 36788999999998876432223334545788887752 3344444 4667777777789988654
|
| >d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Aspartyl dipeptidase PepE domain: Aspartyl dipeptidase PepE species: Salmonella typhimurium [TaxId: 90371]
Probab=80.12 E-value=0.36 Score=34.88 Aligned_cols=71 Identities=8% Similarity=0.048 Sum_probs=46.2
Q ss_pred HHHHHhCCCeEEEEeCCCCCHHHHhccCCCeEEECCCCCCCCC----cchhHHHHH-HhCCCCCEEeeeHhHHHHHHH
Q 029484 4 LKYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVL-ELGPTVPLFGVCMGLQCIGEA 76 (192)
Q Consensus 4 ~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglii~GG~~~~~~----~~~~~~~~~-~~~~~~PilGIC~G~Q~l~~~ 76 (192)
.+.++.+|+++..++..+...+.+. +.|+|+++||...... ...+.+.++ .+.++.++.|.=.|.-++...
T Consensus 54 ~~~~~~l~~~v~~l~~~~~~~~~l~--~ad~I~v~GGn~~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~v~~~~ 129 (229)
T d1fyea_ 54 AEVLAPLGVNVTGIHRVADPLAAIE--KAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPT 129 (229)
T ss_dssp HHHHGGGTCEEEEGGGSSCHHHHHH--HCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSSB
T ss_pred HHHhhhcCceeEEecccccHHHHHh--hCCEEEEcCCCHHHHHHHHHhCCHHHHHHHHHHcCCeEEEeChhHhhcCcc
Confidence 4567788999988865444444555 7899999998332110 011233343 356899999999998776553
|