Citrus Sinensis ID: 029501

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWYCGSRCFDTLHESLFGLCEVTFKYVIGYFGLLEEISIDQASVLPTSLLTVSIFRLLFYLPVFEHYNEDVLFYVIFKIFLSTSMQKPVHSLD
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHccHHEEHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHccHHHHHHHHHHHHHHHHHHHcHcHcccccHHHHHHHHHHHHHHcHHHHcccHHEEEEEEEEEEEcccccccccccc
Coil and Loop (DISEMBL)
myltdlegdyinpydsaAQINMlvfpefftqGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWYcgsrcfdtlHESLFGLCEVTFKYVIGYFGLLEEisidqasvlptsllTVSIFRLLFYLpvfehyneDVLFYVIFKIFLStsmqkpvhsld
Flexible Loop (DISEMBL)
myltdlegDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWYCGSRCFDTLHESLFGLCEVTFKYVIGYFGLLEEISIDQASVLPTSLLTVSIFRLLFYLPVFEHYNEDVLFYVIFKIFLStsmqkpvhsld
Low Complexity Region (SEG)
MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHlrlyklcyliillvlciFWYCGSRCFDTLHESLFGLCEVTFKYVIGYFGLLEEISIDQASVLPTSLLTVSIFRLLFYLPVFEHYNEDVLFYVIFKIFLSTSMQKPVHSLD
Disordered region (IsUnstruct)
****DLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWYCGSRCFDTLHESLFGLCEVTFKYVIGYFGLLEEISIDQASVLPTSLLTVSIFRLLFYLPVFEHYNEDVLFYVIFKIFLS***********
Disordered Region (DISOPRED)
MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWYCGSRCFDTLHESLFGLCEVTFKYVIGYFGLLEEISIDQASVLPTSLLTVSIFRLLFYLPVFEHYNEDVLFYVIFKIFLSTSMQK******
Disordered Region (DISEMBL)
MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWYCGSRCFDTLHESLFGLCEVTFKYVIGYFGLLEEISIDQASVLPTSLLTVSIFRLLFYLPVFEHYNEDVLFYVIFKIFLSTS*********
Disordered Region (DISPRO)
MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWYCGSRCFDTLHESLFGLCEVTFKYVIGYFGLLEEISIDQASVLPTSLLTVSIFRLLFYLPVFEHYNEDVLFYVIFKIFLST**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWYCGSRCFDTLHESLFGLCEVTFKYVIGYFGLLEEISIDQASVLPTSLLTVSIFRLLFYLPVFEHYNEDVLFYVIFKIFLSTSMQKPVHSLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q3EDD7	129	Probable protein cornicho	yes	no	0.515	0.767	0.636	7e-32
Q84W04	137	Protein cornichon homolog	no	no	0.515	0.722	0.636	1e-31
Q8GWT5	137	Protein cornichon homolog	no	no	0.515	0.722	0.616	2e-30
Q9SZ74	135	Protein cornichon homolog	no	no	0.557	0.792	0.467	2e-25
Q9C7D7	146	Protein cornichon homolog	no	no	0.510	0.671	0.459	3e-22
P53173	138	ER-derived vesicles prote	yes	no	0.453	0.630	0.402	2e-12
P38312	142	ER-derived vesicles prote	no	no	0.401	0.542	0.389	4e-10
Q3T126	139	Protein cornichon homolog	yes	no	0.427	0.589	0.348	1e-08
Q5R9M4	139	Protein cornichon homolog	yes	no	0.427	0.589	0.337	2e-08
Q9P003	139	Protein cornichon homolog	yes	no	0.427	0.589	0.337	2e-08

>sp|Q3EDD7|CNIH2_ARATH Probable protein cornichon homolog 2 OS=Arabidopsis thaliana GN=At1g12340 PE=2 SV=2

 Score =  136 bits (343), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 78/99 (78%)

Query: 3   LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYT 62
           L DLE DYINPYDSA++IN +V PEF  QG LC+ +L+T HWFM LL LPYLY+N  LY+
Sbjct: 20  LADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYYNFHLYS 79

Query: 63  RRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFW 101
           +RQHLVDVTEI++ L WEK  RL+KL Y+++ L L IFW
Sbjct: 80  KRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFW 118

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W04|CNIH4_ARATH Protein cornichon homolog 4 OS=Arabidopsis thaliana GN=At1g12390 PE=1 SV=1

 Score =  136 bits (342), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 78/99 (78%)

Query: 3   LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYT 62
           L DLE DYINPYDSA++IN +V PEF  QG LC+ +L+T HWFM LL LPYLY+N  LY+
Sbjct: 28  LADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYYNFHLYS 87

Query: 63  RRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFW 101
           +RQHLVDVTEI++ L WEK  RL+KL Y+++ L L IFW
Sbjct: 88  KRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFW 126

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWT5|CNIH3_ARATH Protein cornichon homolog 3 OS=Arabidopsis thaliana GN=At1g62880 PE=2 SV=1

 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/99 (61%), Positives = 77/99 (77%)

Query: 3   LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYT 62
           L DLE DYINPYDSA++IN +V PE   QG LC+ +L+T HWFM LL +PYLY+N  LY+
Sbjct: 28  LADLEFDYINPYDSASRINFVVLPESILQGFLCVFYLVTGHWFMALLCVPYLYYNFHLYS 87

Query: 63  RRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFW 101
           R+QHL+DVTEI++ L WEK  RL+KL Y+I+ L L IFW
Sbjct: 88  RKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTLFLTIFW 126

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ74|CNIH5_ARATH Protein cornichon homolog 5 OS=Arabidopsis thaliana GN=At4g12090 PE=2 SV=2

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 76/107 (71%)

Query: 3   LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYT 62
           L DLE D INPYD +++IN +V PEF  QG LC+ +++T HWFM +LSLP+L++N+RLY 
Sbjct: 28  LADLEFDRINPYDVSSRINRMVLPEFGLQGLLCLYYILTGHWFMAVLSLPHLFYNIRLYM 87

Query: 63  RRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWYCGSRCFD 109
           +R+HL DVTE+Y+   WE+  R+YK+ ++ + + +  +W   S   D
Sbjct: 88  KREHLADVTELYNTNKWEQKKRVYKIGHIALSIFITTYWLIHSALGD 134

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7D7|CNIH1_ARATH Protein cornichon homolog 1 OS=Arabidopsis thaliana GN=At3g12180 PE=2 SV=1

 Score =  104 bits (260), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 72/98 (73%)

Query: 3   LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYT 62
           LTDLE DY+NP++++ +IN LV PEF  QG+LC+LFL+T HW  FL+++P   ++  LY 
Sbjct: 29  LTDLEADYLNPFETSTRINRLVIPEFILQGSLCLLFLLTWHWVFFLVAVPVTVYHAMLYK 88

Query: 63  RRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIF 100
            R++L+DVTE++  +++EK LR  KL + + L ++ +F
Sbjct: 89  ERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIMVVF 126

Arabidopsis thaliana (taxid: 3702)

>sp|P53173|ERV14_YEAST ER-derived vesicles protein ERV14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV14 PE=1 SV=3

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 51/87 (58%)

Query: 4   TDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTR 63
            DLE DYINP +  +++N L+ PE    G L +LFL+  +WF+FLL+LP L +N+     
Sbjct: 28  ADLEADYINPIELCSKVNKLITPEAALHGALSLLFLLNGYWFVFLLNLPVLAYNLNKIYN 87

Query: 64  RQHLVDVTEIYSQLTWEKHLRLYKLCY 90
           +  L+D TEI+  L   K     KL +
Sbjct: 88  KVQLLDATEIFRTLGKHKRESFLKLGF 114

Could regulate export of the bud site and axial growth sites selection protein AXL2 and possibly other secretory proteins from the endoplasmic reticulum in COPII-coated vesicles. Seems to be required for axial budding pattern in haploid cells.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P38312|ERV15_YEAST ER-derived vesicles protein ERV15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV15 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 45/77 (58%)

Query: 5   DLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRR 64
           DLE DYIN  +   ++N L  PE   Q  +  LFL   +WF+FLL++P L +N     ++
Sbjct: 32  DLEADYINSIELCKRVNRLSVPEAILQAFISALFLFNGYWFVFLLNVPVLAYNASKVYKK 91

Query: 65  QHLVDVTEIYSQLTWEK 81
            HL+D T+I+ +L   K
Sbjct: 92  THLLDATDIFRKLGRCK 108

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q3T126|CNIH4_BOVIN Protein cornichon homolog 4 OS=Bos taurus GN=CNIH4 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 3   LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLY- 61
           L+DLE DYIN     +++N  V PE      + +L LI+ HWF+FLL+LP   +N+  Y 
Sbjct: 27  LSDLECDYINARSCCSKLNKWVIPELVGHTLVTVLMLISLHWFIFLLNLPVAAWNIYRYI 86

Query: 62  ---TRRQHLVDVTEIYSQLTWEKHLR 84
              +    + D TEI+++   + H++
Sbjct: 87  MVPSGNMGVFDPTEIHNRGQLKSHMK 112

Bos taurus (taxid: 9913)

>sp|Q5R9M4|CNIH4_PONAB Protein cornichon homolog 4 OS=Pongo abelii GN=CNIH4 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 3   LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLY- 61
           L+DLE DYIN     +++N  V PE      + +L L++ HWF+FLL+LP   +N+  Y 
Sbjct: 27  LSDLECDYINARSCCSKLNKWVIPELIGHTIVTVLLLMSLHWFIFLLNLPVATWNIYRYI 86

Query: 62  ---TRRQHLVDVTEIYSQLTWEKHLR 84
              +    + D TEI+++   + H++
Sbjct: 87  MVPSGNMGVFDPTEIHNRGQLKSHMK 112

Pongo abelii (taxid: 9601)

>sp|Q9P003|CNIH4_HUMAN Protein cornichon homolog 4 OS=Homo sapiens GN=CNIH4 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 3   LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLY- 61
           L+DLE DYIN     +++N  V PE      + +L L++ HWF+FLL+LP   +N+  Y 
Sbjct: 27  LSDLECDYINARSCCSKLNKWVIPELIGHTIVTVLLLMSLHWFIFLLNLPVATWNIYRYI 86

Query: 62  ---TRRQHLVDVTEIYSQLTWEKHLR 84
              +    + D TEI+++   + H++
Sbjct: 87  MVPSGNMGVFDPTEIHNRGQLKSHMK 112

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
225453913	134	PREDICTED: protein cornichon homolog 4 [	0.526	0.753	0.643	6e-32
224071609	138	predicted protein [Populus trichocarpa]	0.526	0.731	0.653	6e-32
224125076	138	predicted protein [Populus trichocarpa]	0.526	0.731	0.653	6e-32
225470289	138	PREDICTED: protein cornichon homolog 4 [	0.526	0.731	0.673	2e-31
449459670	137	PREDICTED: protein cornichon homolog 4-l	0.583	0.817	0.605	1e-30
449460435	136	PREDICTED: probable protein cornichon ho	0.526	0.742	0.623	2e-30
147828483	149	hypothetical protein VITISV_027918 [Viti	0.520	0.671	0.67	3e-30
145335427	129	putative protein cornichon-2 [Arabidopsi	0.515	0.767	0.636	4e-30
30682747	137	protein cornichon-4 [Arabidopsis thalian	0.515	0.722	0.636	5e-30
297844102	137	cornichon family protein [Arabidopsis ly	0.515	0.722	0.626	1e-29

>gi|225453913|ref|XP_002279334.1| PREDICTED: protein cornichon homolog 4 [Vitis vinifera] gi|296089153|emb|CBI38856.3| unnamed protein product [Vitis vinifera]

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 83/101 (82%)

Query: 1   MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRL 60
           M L DLE DY+NPYDS+++IN ++ PEF  QG LC++ L+T HWFMFL+SLPYLY+NVRL
Sbjct: 26  MCLADLEFDYMNPYDSSSRINRVILPEFIIQGVLCLIHLVTGHWFMFLVSLPYLYYNVRL 85

Query: 61  YTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFW 101
           Y RRQHL+DVTEI++QL  EK LR++KL +LI+LL   IFW
Sbjct: 86  YMRRQHLLDVTEIFNQLNREKQLRIFKLVHLIVLLTTSIFW 126

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071609|ref|XP_002303539.1| predicted protein [Populus trichocarpa] gi|222840971|gb|EEE78518.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/101 (65%), Positives = 81/101 (80%)

Query: 1   MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRL 60
           M L DLE DYINPYDS+++IN ++ PE+ T+G LC+ FL+T HW M LL +PYLY+N RL
Sbjct: 26  MALADLEFDYINPYDSSSRINKVILPEYITEGVLCLFFLVTGHWCMSLLCVPYLYYNARL 85

Query: 61  YTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFW 101
           YTRRQHLVDVTEI++ L WEK  RL+KL YLI+LL L IFW
Sbjct: 86  YTRRQHLVDVTEIFNMLNWEKKQRLFKLGYLIVLLFLSIFW 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125076|ref|XP_002329887.1| predicted protein [Populus trichocarpa] gi|222871124|gb|EEF08255.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/101 (65%), Positives = 82/101 (81%)

Query: 1   MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRL 60
           M L DLE DYINPYDS+++IN ++ PE+ T+G LC+ FLIT HW M LL +PYLY+NVRL
Sbjct: 26  MALADLEFDYINPYDSSSRINKVILPEYITEGVLCLFFLITGHWCMSLLCIPYLYYNVRL 85

Query: 61  YTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFW 101
           YT+RQHLVDVTEI++ L WEK  RL+KL YL++LL L IFW
Sbjct: 86  YTQRQHLVDVTEIFNMLNWEKKQRLFKLGYLVVLLFLSIFW 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470289|ref|XP_002266561.1| PREDICTED: protein cornichon homolog 4 [Vitis vinifera] gi|297742670|emb|CBI34819.3| unnamed protein product [Vitis vinifera]

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 79/101 (78%)

Query: 1   MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRL 60
           M L DLE DYINPYDSA++IN +V PEF TQG LC+ + +T HWFM LL  PYLY+NVRL
Sbjct: 26  MCLADLEFDYINPYDSASRINKVVLPEFITQGVLCLFYSLTGHWFMSLLCGPYLYYNVRL 85

Query: 61  YTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFW 101
           Y RRQHL+DVTEI++ L WEK  RL+KL YLI LL L IFW
Sbjct: 86  YQRRQHLIDVTEIFNLLNWEKKQRLFKLGYLIFLLFLSIFW 126

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459670|ref|XP_004147569.1| PREDICTED: protein cornichon homolog 4-like [Cucumis sativus] gi|449523575|ref|XP_004168799.1| PREDICTED: protein cornichon homolog 4-like [Cucumis sativus]

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/114 (60%), Positives = 86/114 (75%), Gaps = 2/114 (1%)

Query: 1   MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRL 60
           M L DLE DYINPYDS+++IN +V PEF TQG LCI +L++ HW M LL +P LY+N+R+
Sbjct: 26  MCLADLEFDYINPYDSSSRINKVVVPEFITQGVLCIFYLLSGHWVMSLLCMPCLYYNLRM 85

Query: 61  YTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWYCGSRCFDTLHES 114
           YT+R+HLVDVTEI++QL WEK  RL+KL YL+ LL L IFW   S   D  HES
Sbjct: 86  YTQRKHLVDVTEIFNQLPWEKKQRLFKLVYLVSLLFLSIFWLIYSALED--HES 137

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460435|ref|XP_004147951.1| PREDICTED: probable protein cornichon homolog 2-like isoform 1 [Cucumis sativus] gi|449494293|ref|XP_004159504.1| PREDICTED: probable protein cornichon homolog 2-like isoform 1 [Cucumis sativus]

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 79/101 (78%)

Query: 1   MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRL 60
           M L DLE DYINP+DSA++IN ++ PEF   G LC+ +L+T HW M LLS PY+Y+NVRL
Sbjct: 26  MCLADLEFDYINPFDSASRINKVIMPEFIVMGVLCLFYLLTGHWGMSLLSGPYIYYNVRL 85

Query: 61  YTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFW 101
           Y RRQHL+DVTEI++ L WEK  RL+KL YL++LL L IFW
Sbjct: 86  YLRRQHLIDVTEIFNMLNWEKKQRLFKLAYLVVLLFLSIFW 126

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147828483|emb|CAN64319.1| hypothetical protein VITISV_027918 [Vitis vinifera]

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 78/100 (78%)

Query: 1   MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRL 60
           M L DLE DYINPYDSA++IN +V PEF TQG LC+ + +T HWFM LL  PYLY+NVRL
Sbjct: 26  MCLADLEFDYINPYDSASRINKVVLPEFITQGVLCLFYSLTGHWFMSLLCGPYLYYNVRL 85

Query: 61  YTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIF 100
           Y RRQHL+DVTEI++ L WEK  RL+KL YLI LL L IF
Sbjct: 86  YQRRQHLIDVTEIFNLLNWEKKQRLFKLGYLIFLLFLSIF 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145335427|ref|NP_563903.2| putative protein cornichon-2 [Arabidopsis thaliana] gi|308154344|sp|Q3EDD7.2|CNIH2_ARATH RecName: Full=Probable protein cornichon homolog 2 gi|332190747|gb|AEE28868.1| putative protein cornichon-2 [Arabidopsis thaliana]

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 78/99 (78%)

Query: 3   LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYT 62
           L DLE DYINPYDSA++IN +V PEF  QG LC+ +L+T HWFM LL LPYLY+N  LY+
Sbjct: 20  LADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYYNFHLYS 79

Query: 63  RRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFW 101
           +RQHLVDVTEI++ L WEK  RL+KL Y+++ L L IFW
Sbjct: 80  KRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFW 118

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30682747|ref|NP_172701.2| protein cornichon-4 [Arabidopsis thaliana] gi|75148636|sp|Q84W04.1|CNIH4_ARATH RecName: Full=Protein cornichon homolog 4 gi|28416577|gb|AAO42819.1| At1g12390 [Arabidopsis thaliana] gi|110743211|dbj|BAE99496.1| hypothetical protein [Arabidopsis thaliana] gi|332190753|gb|AEE28874.1| protein cornichon-4 [Arabidopsis thaliana]

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 78/99 (78%)

Query: 3   LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYT 62
           L DLE DYINPYDSA++IN +V PEF  QG LC+ +L+T HWFM LL LPYLY+N  LY+
Sbjct: 28  LADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYYNFHLYS 87

Query: 63  RRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFW 101
           +RQHLVDVTEI++ L WEK  RL+KL Y+++ L L IFW
Sbjct: 88  KRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFW 126

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844102|ref|XP_002889932.1| cornichon family protein [Arabidopsis lyrata subsp. lyrata] gi|297335774|gb|EFH66191.1| cornichon family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/99 (62%), Positives = 78/99 (78%)

Query: 3   LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYT 62
           L DLE DYINPYDSA++IN +V PEF  QG LC+ +L+T HW M LL LPYLY+N +LY+
Sbjct: 28  LADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWVMTLLCLPYLYYNFQLYS 87

Query: 63  RRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFW 101
           +RQHLVDVTEI++ L WEK  RL+KL Y+++ L L IFW
Sbjct: 88  KRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFW 126

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2034655	129	AT1G12340 "AT1G12340" [Arabido	0.515	0.767	0.555	4.5e-27
TAIR|locus:2034660	137	AT1G12390 [Arabidopsis thalian	0.515	0.722	0.555	4.5e-27
TAIR|locus:2015514	137	AT1G62880 "AT1G62880" [Arabido	0.515	0.722	0.525	1.1e-25
TAIR|locus:2118101	135	AT4G12090 "AT4G12090" [Arabido	0.557	0.792	0.439	1.3e-22
TAIR|locus:2082199	146	AT3G12180 "AT3G12180" [Arabido	0.411	0.541	0.493	3.5e-20
SGD|S000003022	138	ERV14 "COPII-coated vesicle pr	0.375	0.521	0.459	2.1e-13
UNIPROTKB|G4MYQ8	138	MGG_08132 "Uncharacterized pro	0.416	0.579	0.407	3.9e-12
ASPGD|ASPL0000028082	138	AN5195 [Emericella nidulans (t	0.416	0.579	0.419	8.2e-12
POMBASE|SPAC30C2.05	137	erv14 "cornichon family protei	0.385	0.540	0.405	8.2e-12
SGD|S000000414	142	ERV15 "Protein involved in exp	0.380	0.514	0.397	2.2e-11

TAIR|locus:2034655 AT1G12340 "AT1G12340" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 55/99 (55%), Positives = 66/99 (66%)

Query:     3 LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYT 62
             L DLE DYINPYDSA++IN +V PEF  QG LC+ +L+T HWFM LL LPYLY+N  LY+
Sbjct:    20 LADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYYNFHLYS 79

Query:    63 RRQHLVDVTEIYSQLTWEKHXXXXXXXXXXXXXXXXXFW 101
             +RQHLVDVTEI++ L WEK                  FW
Sbjct:    80 KRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFW 118

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

GO:0035556 "intracellular signal transduction" evidence=IEA

TAIR|locus:2034660 AT1G12390 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 55/99 (55%), Positives = 66/99 (66%)

Query:     3 LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYT 62
             L DLE DYINPYDSA++IN +V PEF  QG LC+ +L+T HWFM LL LPYLY+N  LY+
Sbjct:    28 LADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYYNFHLYS 87

Query:    63 RRQHLVDVTEIYSQLTWEKHXXXXXXXXXXXXXXXXXFW 101
             +RQHLVDVTEI++ L WEK                  FW
Sbjct:    88 KRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFW 126

GO:0016020 "membrane" evidence=IEA;ISS

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2015514 AT1G62880 "AT1G62880" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 52/99 (52%), Positives = 65/99 (65%)

Query:     3 LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYT 62
             L DLE DYINPYDSA++IN +V PE   QG LC+ +L+T HWFM LL +PYLY+N  LY+
Sbjct:    28 LADLEFDYINPYDSASRINFVVLPESILQGFLCVFYLVTGHWFMALLCVPYLYYNFHLYS 87

Query:    63 RRQHLVDVTEIYSQLTWEKHXXXXXXXXXXXXXXXXXFW 101
             R+QHL+DVTEI++ L WEK                  FW
Sbjct:    88 RKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTLFLTIFW 126

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0035556 "intracellular signal transduction" evidence=IEA

TAIR|locus:2118101 AT4G12090 "AT4G12090" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 47/107 (43%), Positives = 66/107 (61%)

Query:     3 LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYT 62
             L DLE D INPYD +++IN +V PEF  QG LC+ +++T HWFM +LSLP+L++N+RLY 
Sbjct:    28 LADLEFDRINPYDVSSRINRMVLPEFGLQGLLCLYYILTGHWFMAVLSLPHLFYNIRLYM 87

Query:    63 RRQHLVDVTEIYSQLTWEKHXXXXXXXXXXXXXXXXXFWYCGSRCFD 109
             +R+HL DVTE+Y+   WE+                  +W   S   D
Sbjct:    88 KREHLADVTELYNTNKWEQKKRVYKIGHIALSIFITTYWLIHSALGD 134

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

GO:0035556 "intracellular signal transduction" evidence=IEA

TAIR|locus:2082199 AT3G12180 "AT3G12180" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 39/79 (49%), Positives = 61/79 (77%)

Query:     3 LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYT 62
             LTDLE DY+NP++++ +IN LV PEF  QG+LC+LFL+T HW  FL+++P   ++  LY 
Sbjct:    29 LTDLEADYLNPFETSTRINRLVIPEFILQGSLCLLFLLTWHWVFFLVAVPVTVYHAMLYK 88

Query:    63 RRQHLVDVTEIYSQLTWEK 81
              R++L+DVTE++  +++EK
Sbjct:    89 ERRYLIDVTEVFRGISFEK 107

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

SGD|S000003022 ERV14 "COPII-coated vesicle protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 34/74 (45%), Positives = 51/74 (68%)

Query:     5 DLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNV-RLYTR 63
             DLE DYINP +  +++N L+ PE    G L +LFL+  +WF+FLL+LP L +N+ ++Y +
Sbjct:    29 DLEADYINPIELCSKVNKLITPEAALHGALSLLFLLNGYWFVFLLNLPVLAYNLNKIYNK 88

Query:    64 RQHLVDVTEIYSQL 77
              Q L+D TEI+  L
Sbjct:    89 VQ-LLDATEIFRTL 101

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=IEA;ISM

GO:0030437 "ascospore formation" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0030134 "ER to Golgi transport vesicle" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP;IPI

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0007120 "axial cellular bud site selection" evidence=IMP

UNIPROTKB|G4MYQ8 MGG_08132 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 33/81 (40%), Positives = 47/81 (58%)

Query:     1 MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRL 60
             MY +DLE DYINP D   ++N  + PE    G L  +FLI  +W   +L+LP L +N++ 
Sbjct:    28 MY-SDLECDYINPIDLCNRLNTYIIPEAAVHGFLTFIFLINGYWLPLILNLPLLGWNIKK 86

Query:    61 YTRRQHLVDVTEIYSQLTWEK 81
                  HL+D TEI+ +L   K
Sbjct:    87 IVDNAHLLDATEIFRKLNVHK 107

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000028082 AN5195 [Emericella nidulans (taxid:162425)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 34/81 (41%), Positives = 45/81 (55%)

Query:     1 MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRL 60
             MY +DLE DYINP D   ++N  + PE      L  LF+I  +W    L+LP L FN + 
Sbjct:    28 MY-SDLECDYINPIDLCNRLNAYIIPEAGVHAFLTFLFVINGYWLAIALNLPLLAFNAKK 86

Query:    61 YTRRQHLVDVTEIYSQLTWEK 81
                 QHL+D TEI+ +L   K
Sbjct:    87 IYDNQHLLDATEIFRKLNVHK 107

GO:0030437 "ascospore formation" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0007120 "axial cellular bud site selection" evidence=IEA

GO:0030134 "ER to Golgi transport vesicle" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0035556 "intracellular signal transduction" evidence=IEA

POMBASE|SPAC30C2.05 erv14 "cornichon family protein Erv14 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query:     4 TDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTR 63
             +DLE DYINP D   ++N LV PE  +   + +L L+ + W +FL +LP L F+      
Sbjct:    31 SDLEMDYINPIDLCNKLNDLVMPEIISHTLVTLLLLLGKKWLLFLANLPLLVFHANQVIH 90

Query:    64 RQHLVDVTEIYSQL 77
             + H++D TEI+ QL
Sbjct:    91 KTHILDATEIFRQL 104

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IC

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016971 "flavin-linked sulfhydryl oxidase activity" evidence=ISS

GO:0030134 "ER to Golgi transport vesicle" evidence=ISO

GO:0035556 "intracellular signal transduction" evidence=IEA

SGD|S000000414 ERV15 "Protein involved in export of proteins from the endoplasmic reticulum" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 29/73 (39%), Positives = 44/73 (60%)

Query:     5 DLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRR 64
             DLE DYIN  +   ++N L  PE   Q  +  LFL   +WF+FLL++P L +N     ++
Sbjct:    32 DLEADYINSIELCKRVNRLSVPEAILQAFISALFLFNGYWFVFLLNVPVLAYNASKVYKK 91

Query:    65 QHLVDVTEIYSQL 77
              HL+D T+I+ +L
Sbjct:    92 THLLDATDIFRKL 104

GO:0003674 "molecular_function" evidence=ND

GO:0007120 "axial cellular bud site selection" evidence=ISS

GO:0030134 "ER to Golgi transport vesicle" evidence=IGI

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IGI

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0016020 "membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_III0938 hypothetical protein (138 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
pfam03311	128	pfam03311, Cornichon, Cornichon protein	5e-28
PLN00174	160	PLN00174, PLN00174, predicted protein; Provisional	1e-06

>gnl|CDD|217486 pfam03311, Cornichon, Cornichon protein

 Score =  101 bits (254), Expect = 5e-28
 Identities = 47/99 (47%), Positives = 66/99 (66%)

Query: 3   LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYT 62
           L+DLE DYINP D  +++N LV PE+   G LC+LFL+T HWF+FLL+LP L +NV LY 
Sbjct: 30  LSDLEADYINPIDLCSRLNPLVLPEYILHGFLCLLFLLTGHWFVFLLNLPLLAYNVYLYY 89

Query: 63  RRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFW 101
           +R HL+D TEI+  L+  K     KL + ++L    ++ 
Sbjct: 90  KRTHLLDATEIFRTLSKHKRESFIKLAFYLLLFFYYLYR 128

Length = 128

>gnl|CDD|177769 PLN00174, PLN00174, predicted protein; Provisional

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 27/98 (27%), Positives = 52/98 (53%)

Query: 3   LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYT 62
           L DL  D +NP +   ++N L  PE+     L I F+I   W +  L+ P++++N   + 
Sbjct: 36  LQDLSTDTVNPVEVCDKVNQLKVPEYLAHLFLSIAFVIRGWWIVGFLNFPFIFYNFAQWY 95

Query: 63  RRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIF 100
             +H +D  +I++ L+ E  +   K  + II+++  I+
Sbjct: 96  EGKHQLDSAQIFNVLSRELRVIKAKSAFFIIIVIYTIW 133

Length = 160

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
KOG2729	137	consensus ER vesicle integral membrane protein inv	100.0
PLN00174	160	predicted protein; Provisional	100.0
PF03311	128	Cornichon: Cornichon protein; InterPro: IPR003377	100.0

>KOG2729 consensus ER vesicle integral membrane protein involved in establishing cell polarity, signaling and protein degradation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=5e-51  Score=328.42  Aligned_cols=109  Identities=47%  Similarity=0.869  Sum_probs=107.5

Q ss_pred             CcccccccccCChHHHhhcCCcchhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHhhhhhcCCCccchhhhhhhHHHH
Q 029501            1 MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWE   80 (192)
Q Consensus         1 I~LsDLE~DyiNPiDlc~rLN~LVlPE~i~H~~L~lLfLLtG~W~~~LLNlPll~Yhi~~y~~r~hLyDpTeIfnqL~~~   80 (192)
                      ||++|||+||+||+|+|||+|++|+||++.||++|++++++|||+++++|+|+++||+|+|++|+|++|||||||+|++|
T Consensus        29 I~~~DLe~DyiNPid~c~rlN~lVlPE~ilh~~KOGlfLl~g~W~~fllnlP~l~y~~~~y~~r~~l~D~TeI~n~L~~~  108 (137)
T KOG2729|consen   29 ICLADLETDYINPIDLCSRLNRLVLPEFILHGLLCLLFLLTGHWFMFLLNLPLLAYNAWLYMKRPHLYDPTEIFNTLSSE  108 (137)
T ss_pred             HHHHHHhhccCCHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcCCcccCHHHHHHHhHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 029501           81 KHLRLYKLCYLIILLVLCIFWYCGSRCFD  109 (192)
Q Consensus        81 kKe~~iKLaFYLl~FF~yLY~mI~sLv~d  109 (192)
                      |||||+|+|||+++||+|+||||+|++++
T Consensus       109 ~k~~~~KL~fyll~FF~yly~mI~slv~~  137 (137)
T KOG2729|consen  109 KKERWIKLAFYLLSFFYYLYWMIYSLVSS  137 (137)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999975

>PLN00174 predicted protein; Provisional

Probab=100.00  E-value=2e-46  Score=307.96  Aligned_cols=109  Identities=26%  Similarity=0.520  Sum_probs=105.6

Q ss_pred             ccccccccCChHHHhhcCCcchhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHhhhhhcCCCccchhhhhhhHHHHHH
Q 029501            3 LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKH   82 (192)
Q Consensus         3 LsDLE~DyiNPiDlc~rLN~LVlPE~i~H~~L~lLfLLtG~W~~~LLNlPll~Yhi~~y~~r~hLyDpTeIfnqL~~~kK   82 (192)
                      +||||+||+||+|+|+|+|++|+||+++|+++|++++++|+|+++++|+|+++||+++|.+|+|++|||||||+|++|||
T Consensus        36 lsDLE~DYiNPiD~CnrLN~lVlPEyiiH~~l~lLfLltG~W~~fLLNlPll~Yhv~~y~~r~hL~D~TeIfn~L~~~kK  115 (160)
T PLN00174         36 LQDLSTDTVNPVEVCDKVNQLKVPEYLAHLFLSIAFVIRGWWIVGFLNFPFIFYNFAQWYEGKHQLDSAQIFNVLSRELR  115 (160)
T ss_pred             HHHhhhccCCHHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhhccCC
Q 029501           83 LRLYKLCYLIILLVLCIF-WYCGSRCFDTL  111 (192)
Q Consensus        83 e~~iKLaFYLl~FF~yLY-~mI~sLv~d~~  111 (192)
                      +||+|+|||+++||+|+| |||++.=+..+
T Consensus       116 e~~iKLaFYLl~FF~~ly~~mI~~~~~~~~  145 (160)
T PLN00174        116 VIKAKSAFFIIIVIYTIWEWMIWVPPDYVS  145 (160)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence            999999999999999999 99998755444

>PF03311 Cornichon: Cornichon protein; InterPro: IPR003377 The drosophila cornichon protein (gene: cni) [] is required in the germline for dorsal-ventral signalling

Probab=100.00  E-value=8e-44  Score=281.15  Aligned_cols=101  Identities=48%  Similarity=0.902  Sum_probs=99.7

Q ss_pred             CcccccccccCChHHHhhcCCcchhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHhhhhhcCCCccchhhhhhhHHHH
Q 029501            1 MYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWE   80 (192)
Q Consensus         1 I~LsDLE~DyiNPiDlc~rLN~LVlPE~i~H~~L~lLfLLtG~W~~~LLNlPll~Yhi~~y~~r~hLyDpTeIfnqL~~~   80 (192)
                      |++||||+||+||+|+|+|+||+|+||+++|+++|++++++|||+++++|+|+++||+++|.+|+|++|||||||+|+++
T Consensus        28 i~l~DLe~D~iNp~d~c~~lN~lv~pE~~~h~~l~~l~ll~g~w~~~llnlPl~~y~~~~~~~~~~l~D~T~If~~L~~~  107 (128)
T PF03311_consen   28 ICLSDLECDYINPIDLCSRLNPLVLPEYIIHGFLCLLFLLTGHWFLFLLNLPLLAYHIYRYFRRQHLYDPTEIFNQLKRE  107 (128)
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 029501           81 KHLRLYKLCYLIILLVLCIFW  101 (192)
Q Consensus        81 kKe~~iKLaFYLl~FF~yLY~  101 (192)
                      ||+|++|+|||+++||+|+||
T Consensus       108 kk~~~iKl~~yll~ff~yly~  128 (128)
T PF03311_consen  108 KKESFIKLGFYLLLFFYYLYR  128 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999996

The dorsal-ventral pattern formation involves a reorganisation of the microtubule network correlated with the movement of the oocyte nucleus, and depending on the initial correct establishment of the anterior-posterior axis via a signal from the oocyte produced by cornichon and gurken and received by torpedo protein in the follicle cells. The biochemical function of the cornichon protein is currently not known. It is a protein of 144 residues that seems to contain three transmembrane regions. ; GO: 0035556 intracellular signal transduction, 0016020 membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 5e-04
 Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 49/202 (24%)

Query: 9   DYINPYDSAAQINML-VFPE--FFTQGTLCIL-------------------FLITEHWFM 46
           + + P +     + L VFP         L ++                    L+ +    
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 47  FLLSLPYLYFNVRLYTRRQ---H--LVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFW 101
             +S+P +Y  +++    +   H  +VD   I      +  +  Y   Y         + 
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--------FYS 475

Query: 102 YCGSRCFDTLHESLFGLCEVTFKYVIGYFGLLEE--ISIDQASVLPTSLLTVSIFRLLFY 159
           + G    +  H     L    F+ V   F  LE+       A     S+L   + +L FY
Sbjct: 476 HIGHHLKNIEHPERMTL----FRMVFLDFRFLEQKIRHDSTAWNASGSILNT-LQQLKFY 530

Query: 160 L-------PVFEHYNEDVLFYV 174
                   P +E     +L ++
Sbjct: 531 KPYICDNDPKYERLVNAILDFL 552

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00