Citrus Sinensis ID: 029533

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYEI
Secondary Structure (PSIPRED)
cEEEccccccccccccccccccccccccHHHHHHHccccccccEEEEEcccEEEEEEEccccccccccccccccEEEEEccEEccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHccccEEEEEEEEEccccEEEEEEcccccccEEEEEccccEEEEEEcHHHHHHccccccccccccEEEc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccHHHccccccccccccHHHHHHHHHHcccccEEEEEcccEEEEEcccccccccccEEEccccEEEEEEccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHccccEEEEEEEccccEEEEEEcccccEEEEEEEcccccEEEEcHHHHHHHHccccccccccccEEc
Coil and Loop (DISEMBL)
MLAVFDKSvakapealqspqtesACALKNGllanhfssvhpgsvtvNLGSSGVIayslnrqnpllprlFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTlrdrgpypadqvVRDIQGKFAFILYDsssknaflasdadgsvpffwgtdseghlvlsdDVEIvkkgcgksfapfpkgiyei
Flexible Loop (DISEMBL)
mlavfdksvakapealqspqTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKgcgksfapfpkgiyei
Low Complexity Region (SEG)
MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYEI
Disordered region (IsUnstruct)
************************CALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFP******
Disordered Region (DISOPRED)
MLAVFDKSVAKAP**********************FSSVHPGSVTVNLGSSGVIAYSLN*********FAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYEI
Disordered Region (DISEMBL)
MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYEI
Disordered Region (DISPRO)
MLAVFDKSVAKAPEALQSP******ALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYEI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
P24805	149	Stem-specific protein TSJ	N/A	no	0.760	0.979	0.418	2e-30
P22106	554	Asparagine synthetase B [	N/A	no	0.531	0.184	0.283	1e-06
Q54MB4	557	Probable asparagine synth	yes	no	0.364	0.125	0.338	4e-05
Q10MX3	604	Asparagine synthetase [gl	no	no	0.588	0.187	0.258	0.0004

>sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1

 Score =  132 bits (331), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 94/148 (63%), Gaps = 2/148 (1%)

Query: 1   MLAVFDKSVAKAPEALQSPQT--ESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSL 58
           MLAVF++S+ + P  L  PQ   +   A     +A  F +    S   +L +   +A+S 
Sbjct: 1   MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSH 60

Query: 59  NRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPY 118
             +NPL PR   V+DD+FC+F G ++N   L++ YGL++ A E +I++EAY+ LRDR PY
Sbjct: 61  GNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPY 120

Query: 119 PADQVVRDIQGKFAFILYDSSSKNAFLA 146
           P DQV+++++GKFAFIL+DS +   FLA
Sbjct: 121 PPDQVIKELEGKFAFILFDSKASTLFLA 148

Nicotiana tabacum (taxid: 4097)

>sp|P22106|ASNB_ECOLI Asparagine synthetase B [glutamine-hydrolyzing] OS=Escherichia coli (strain K12) GN=asnB PE=1 SV=3

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 11/113 (9%)

Query: 81  GHIENVALLKQQYGLN---KTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYD 137
           G I N   L+ +YG     +T ++  +++  Y+   ++GP    + + D+QG FAF LYD
Sbjct: 76  GEIYNHQALRAEYGDRYQFQTGSDCEVILALYQ---EKGP----EFLDDLQGMFAFALYD 128

Query: 138 SSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIY 190
           S      +  D  G +P + G D  G L ++ +++ +   C ++   FP G Y
Sbjct: 129 SEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-RTIKEFPAGSY 180

Catalyzes the ATP-dependent conversion of aspartate into asparagine, using glutamine as a source of nitrogen. Can also use ammonia as the nitrogen source in vitro, albeit with lower efficiency. As nucleotide substrates, ATP and dATP are utilized at a similar rate in both the glutamine- and ammonia-dependent reactions, whereas GTP utilization is only 15% that of ATP, and CTP, UTP, ITP and XTP are very poor or not substrates. Also exhibits glutaminase activity.

Escherichia coli (strain K12) (taxid: 83333)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 4

>sp|Q54MB4|ASNS_DICDI Probable asparagine synthetase [glutamine-hydrolyzing] OS=Dictyostelium discoideum GN=asns PE=1 SV=1

 Score = 47.8 bits (112), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 120 ADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCG 179
            D  V  + G FAF++Y+  + +   A D  G VP + G   +G +  S +++ +K  C 
Sbjct: 113 GDDFVHMLDGDFAFVVYNKKANSFLAARDPIGVVPLYIGWHKDGSIWFSSEMKAIKDDCY 172

Query: 180 KSFAPFPKGIY 190
           K F PFP G Y
Sbjct: 173 K-FQPFPPGHY 182

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 4

>sp|Q10MX3|ASNS1_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Oryza sativa subsp. japonica GN=Os03g0291500 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 11/124 (8%)

Query: 68  LFAVVDDIFCLFQGHIENVALLKQQYGLNKT---ANEVIIVIEAYRTLRDRGPYPADQVV 124
           L+     I  +  G I N   +++Q+    T    ++  ++I  Y           +  V
Sbjct: 63  LYNADRTIVVVANGEIYNHKKIRKQFASKHTFSTGSDCEVIIPLYEEY-------GEDFV 115

Query: 125 RDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAP 184
             + G FAF+LYD+ +K    A DA G  P + G  S+G + +S +++ + + C   F  
Sbjct: 116 DMLDGVFAFVLYDTRTKTYMAARDAIGVNPLYIGRGSDGAVWISSEMKALNEDC-VEFEI 174

Query: 185 FPKG 188
           FP G
Sbjct: 175 FPPG 178

Essential for nitrogen assimilation, distribution and remobilization within the plant via the phloem.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
449432660	250	PREDICTED: stem-specific protein TSJT1-l	0.989	0.76	0.842	1e-90
224111100	251	predicted protein [Populus trichocarpa]	0.989	0.756	0.827	2e-88
255552037	249	Stem-specific protein TSJT1, putative [R	0.989	0.763	0.794	3e-88
356535946	250	PREDICTED: stem-specific protein TSJT1 [	0.989	0.76	0.810	1e-87
255629173	255	unknown [Glycine max]	0.989	0.745	0.810	1e-87
351727409	250	uncharacterized protein LOC100526912 [Gl	0.989	0.76	0.805	2e-87
224099853	251	predicted protein [Populus trichocarpa]	0.989	0.756	0.806	3e-87
388508114	250	unknown [Medicago truncatula]	0.989	0.76	0.815	4e-87
358347172	229	Stem-specific protein TSJT1, partial [Me	0.989	0.829	0.815	8e-87
388509738	256	unknown [Lotus japonicus]	0.989	0.742	0.805	2e-86

>gi|449432660|ref|XP_004134117.1| PREDICTED: stem-specific protein TSJT1-like [Cucumis sativus] gi|449504146|ref|XP_004162265.1| PREDICTED: LOW QUALITY PROTEIN: stem-specific protein TSJT1-like [Cucumis sativus]

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 160/190 (84%), Positives = 176/190 (92%)

Query: 1   MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNR 60
           M AVFDKSVAK+P+ALQSP+++S  ALK+G+LA HFSSV+PGSV VNLGSSG++AYS+ +
Sbjct: 1   MFAVFDKSVAKSPDALQSPESDSTWALKDGILAQHFSSVYPGSVIVNLGSSGLLAYSVEK 60

Query: 61  QNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPA 120
           QNP+LPRLFAVVDDIFCLFQGHIENVA LKQQYGLNK ANEVIIVIEAYRTLRDRGPYPA
Sbjct: 61  QNPILPRLFAVVDDIFCLFQGHIENVAQLKQQYGLNKAANEVIIVIEAYRTLRDRGPYPA 120

Query: 121 DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGK 180
           DQVVRDIQGKF FILYDSSSK +F ASDADGSVPF WGTDSEG LVLSDDVEI+KKGCGK
Sbjct: 121 DQVVRDIQGKFVFILYDSSSKTSFFASDADGSVPFHWGTDSEGQLVLSDDVEIMKKGCGK 180

Query: 181 SFAPFPKGIY 190
           SFAPFPKG +
Sbjct: 181 SFAPFPKGCF 190

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111100|ref|XP_002315748.1| predicted protein [Populus trichocarpa] gi|222864788|gb|EEF01919.1| predicted protein [Populus trichocarpa]

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 158/191 (82%), Positives = 177/191 (92%), Gaps = 1/191 (0%)

Query: 1   MLAVFDKSVAKAPEALQSPQTE-SACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLN 59
           MLAVFDK+VAK P+ALQSP +  +A  LK+G LANH +S+HPGSVTVNLG+SG+IAYSL+
Sbjct: 1   MLAVFDKTVAKCPDALQSPHSAPAASVLKDGFLANHLASLHPGSVTVNLGTSGLIAYSLD 60

Query: 60  RQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYP 119
           +QNPLLPRLFAVVDDIFCLFQGHIENVA+LKQQYGLNKTANEVIIVIEAYRTLRDRGPYP
Sbjct: 61  KQNPLLPRLFAVVDDIFCLFQGHIENVAVLKQQYGLNKTANEVIIVIEAYRTLRDRGPYP 120

Query: 120 ADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCG 179
           ADQVV+ I GKFAFILYDS+SK  F+A DADGSVPFFWGTDSEG+LVLSDDV+IV+KGCG
Sbjct: 121 ADQVVKGILGKFAFILYDSTSKATFVAVDADGSVPFFWGTDSEGNLVLSDDVQIVQKGCG 180

Query: 180 KSFAPFPKGIY 190
           KSFAPFPKG +
Sbjct: 181 KSFAPFPKGCF 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552037|ref|XP_002517063.1| Stem-specific protein TSJT1, putative [Ricinus communis] gi|223543698|gb|EEF45226.1| Stem-specific protein TSJT1, putative [Ricinus communis]

 Score =  329 bits (844), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 151/190 (79%), Positives = 174/190 (91%)

Query: 1   MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNR 60
           MLAVFD +VAK P+ALQSP + S+ ALK+G LA HF S+HP SVTVNLG++G+IAYSL++
Sbjct: 1   MLAVFDNTVAKCPDALQSPHSASSSALKDGFLAKHFGSIHPASVTVNLGTAGIIAYSLDK 60

Query: 61  QNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPA 120
           QNPLLPRLFAVVDDIFCLFQGHIEN+A+LKQQYGLNKTANEVIIVIEA+RTLRDRGPYPA
Sbjct: 61  QNPLLPRLFAVVDDIFCLFQGHIENIAVLKQQYGLNKTANEVIIVIEAFRTLRDRGPYPA 120

Query: 121 DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGK 180
           DQVVRDIQGKFAF+LYDS+SK  F+A+DADGSVPFFWG DSE HLVLSDD +I+++ CGK
Sbjct: 121 DQVVRDIQGKFAFVLYDSTSKATFIAADADGSVPFFWGADSERHLVLSDDAQILQQACGK 180

Query: 181 SFAPFPKGIY 190
           SFAPFPKG +
Sbjct: 181 SFAPFPKGCF 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535946|ref|XP_003536502.1| PREDICTED: stem-specific protein TSJT1 [Glycine max]

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 154/190 (81%), Positives = 171/190 (90%)

Query: 1   MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNR 60
           MLAVFDKSVAK+PE LQSP + S  ALK+G LA HFSSVHPGSVTVNLGSSG++AYSL++
Sbjct: 1   MLAVFDKSVAKSPEGLQSPHSNSVSALKDGFLAEHFSSVHPGSVTVNLGSSGLLAYSLHK 60

Query: 61  QNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPA 120
           QNPLLPRLFAVVDDIFCLFQGH+ENVA LKQQYGLNKTA EVII+IEAYRTLRDRGPYPA
Sbjct: 61  QNPLLPRLFAVVDDIFCLFQGHLENVANLKQQYGLNKTATEVIIIIEAYRTLRDRGPYPA 120

Query: 121 DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGK 180
            QVVRD QGKFAFILYDS SK AF+A+DADGSVPF WGTD++G+LV SD+ EIV K CGK
Sbjct: 121 AQVVRDFQGKFAFILYDSGSKTAFVAADADGSVPFVWGTDADGNLVFSDETEIVTKSCGK 180

Query: 181 SFAPFPKGIY 190
           S+APFPKG +
Sbjct: 181 SYAPFPKGFF 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255629173|gb|ACU14931.1| unknown [Glycine max]

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 154/190 (81%), Positives = 171/190 (90%)

Query: 1   MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNR 60
           MLAVFDKSVAK+PE LQSP + S  ALK+G LA HFSSVHPGSVTVNLGSSG++AYSL++
Sbjct: 1   MLAVFDKSVAKSPEGLQSPHSNSVSALKDGFLAEHFSSVHPGSVTVNLGSSGLMAYSLHK 60

Query: 61  QNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPA 120
           QNPLLPRLFAVVDDIFCLFQGH+ENVA LKQQYGLNKTA EVII+IEAYRTLRDRGPYPA
Sbjct: 61  QNPLLPRLFAVVDDIFCLFQGHLENVANLKQQYGLNKTATEVIIIIEAYRTLRDRGPYPA 120

Query: 121 DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGK 180
            QVVRD QGKFAFILYDS SK AF+A+DADGSVPF WGTD++G+LV SD+ EIV K CGK
Sbjct: 121 AQVVRDFQGKFAFILYDSGSKTAFVAADADGSVPFVWGTDADGNLVFSDETEIVTKSCGK 180

Query: 181 SFAPFPKGIY 190
           S+APFPKG +
Sbjct: 181 SYAPFPKGFF 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727409|ref|NP_001235880.1| uncharacterized protein LOC100526912 [Glycine max] gi|255631135|gb|ACU15933.1| unknown [Glycine max]

 Score =  326 bits (836), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 153/190 (80%), Positives = 171/190 (90%)

Query: 1   MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNR 60
           MLAVFDKSVAK+PE LQSP ++S  ALK+G +A HFSSVHPGSVTVNLGSSG++AYSL+R
Sbjct: 1   MLAVFDKSVAKSPEGLQSPHSDSVSALKDGFIAEHFSSVHPGSVTVNLGSSGLLAYSLHR 60

Query: 61  QNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPA 120
           QNPLLPRLFAVVDDIFCLFQGH+ENVA LKQQYGLNKTA EVII+IEAYRTLRDRGPYPA
Sbjct: 61  QNPLLPRLFAVVDDIFCLFQGHLENVANLKQQYGLNKTATEVIIIIEAYRTLRDRGPYPA 120

Query: 121 DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGK 180
            QVVRD QGKFAFILYDS SK AF+A+DADGSVPF WGTD++G+L+ SD+ EIV K CGK
Sbjct: 121 AQVVRDFQGKFAFILYDSGSKTAFVAADADGSVPFVWGTDADGNLIFSDETEIVTKSCGK 180

Query: 181 SFAPFPKGIY 190
           S APFPKG +
Sbjct: 181 SSAPFPKGFF 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099853|ref|XP_002311645.1| predicted protein [Populus trichocarpa] gi|222851465|gb|EEE89012.1| predicted protein [Populus trichocarpa]

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 154/191 (80%), Positives = 175/191 (91%), Gaps = 1/191 (0%)

Query: 1   MLAVFDKSVAKAPEALQSPQTESAC-ALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLN 59
           MLAVFD +VAK P+ALQSP +  A  ALK+G LANHF+S HPGSVTVNLG+SG+I++S+ 
Sbjct: 1   MLAVFDNTVAKCPDALQSPHSAPASSALKDGFLANHFASQHPGSVTVNLGTSGLISHSVE 60

Query: 60  RQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYP 119
           +QNP LPRLFAVVDDIFCLFQGHI+NVA+LKQQYGLNKTANEVI+VIEAYRTLRDRGPYP
Sbjct: 61  KQNPFLPRLFAVVDDIFCLFQGHIDNVAVLKQQYGLNKTANEVIVVIEAYRTLRDRGPYP 120

Query: 120 ADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCG 179
           ADQVV+DIQGKFAFILYDS+SK  F A+DADGSVPFFWG DSEG+LVLSDDV+IV+KGCG
Sbjct: 121 ADQVVKDIQGKFAFILYDSTSKATFFAADADGSVPFFWGADSEGNLVLSDDVQIVQKGCG 180

Query: 180 KSFAPFPKGIY 190
           KSFAPFPKG +
Sbjct: 181 KSFAPFPKGCF 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508114|gb|AFK42123.1| unknown [Medicago truncatula]

 Score =  325 bits (834), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 155/190 (81%), Positives = 173/190 (91%)

Query: 1   MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNR 60
           MLAVFDKSVAK+PE LQSPQ+ S  ALK+G LA HFSS  PGSVTVNLGSSGV+AYSLN+
Sbjct: 1   MLAVFDKSVAKSPEGLQSPQSNSVSALKDGFLAQHFSSEFPGSVTVNLGSSGVLAYSLNQ 60

Query: 61  QNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPA 120
           QN LLPRLFAVVDDIFCLFQGH+ENVA LKQQYGLNKTANEVIIVIEAYRTLRDRGPYPA
Sbjct: 61  QNFLLPRLFAVVDDIFCLFQGHLENVANLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPA 120

Query: 121 DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGK 180
            QVVRD QGKFAFIL+DS SKNAF+++DADG+VPFFWGTD++G+LVLSD+ +IV K CGK
Sbjct: 121 SQVVRDFQGKFAFILFDSGSKNAFISADADGNVPFFWGTDADGNLVLSDETDIVTKSCGK 180

Query: 181 SFAPFPKGIY 190
           S+APFPKG +
Sbjct: 181 SYAPFPKGCF 190

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358347172|ref|XP_003637634.1| Stem-specific protein TSJT1, partial [Medicago truncatula] gi|355503569|gb|AES84772.1| Stem-specific protein TSJT1, partial [Medicago truncatula]

 Score =  325 bits (832), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 155/190 (81%), Positives = 173/190 (91%)

Query: 1   MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNR 60
           MLAVFDKSVAK+PE LQSPQ+ S  ALK+G LA HFSS  PGSVTVNLGSSGV+AYSLN+
Sbjct: 1   MLAVFDKSVAKSPEGLQSPQSNSVSALKDGFLAQHFSSEFPGSVTVNLGSSGVLAYSLNQ 60

Query: 61  QNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPA 120
           QN LLPRLFAVVDDIFCLFQGH+ENVA LKQQYGLNKTANEVIIVIEAYRTLRDRGPYPA
Sbjct: 61  QNFLLPRLFAVVDDIFCLFQGHLENVANLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPA 120

Query: 121 DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGK 180
            QVVRD QGKFAFIL+DS SKNAF+++DADG+VPFFWGTD++G+LVLSD+ +IV K CGK
Sbjct: 121 SQVVRDFQGKFAFILFDSGSKNAFISADADGNVPFFWGTDADGNLVLSDETDIVTKSCGK 180

Query: 181 SFAPFPKGIY 190
           S+APFPKG +
Sbjct: 181 SYAPFPKGCF 190

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509738|gb|AFK42935.1| unknown [Lotus japonicus]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 153/190 (80%), Positives = 170/190 (89%)

Query: 1   MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNR 60
           MLAVFDKSVAK PEALQSPQ+ S  ALK+G LA HFSSV+PGSV VNLG+SG +AYSL++
Sbjct: 1   MLAVFDKSVAKGPEALQSPQSNSVSALKDGFLAQHFSSVYPGSVIVNLGTSGTLAYSLHK 60

Query: 61  QNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPA 120
           QNPLLPRLFAVVDDIFCLFQGHI+NVA LKQQYGLNKTANEVIIVIEAYRTLRDRGPYPA
Sbjct: 61  QNPLLPRLFAVVDDIFCLFQGHIQNVAHLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPA 120

Query: 121 DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGK 180
            QVVRD QGKF F+L+DS SK AF++SD DGSVPFFWGTD++G+LVLSD+ EIV K CGK
Sbjct: 121 AQVVRDFQGKFTFVLFDSGSKTAFISSDDDGSVPFFWGTDADGNLVLSDETEIVAKSCGK 180

Query: 181 SFAPFPKGIY 190
           S APFPKG +
Sbjct: 181 SSAPFPKGCF 190

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
TAIR|locus:2084598	248	AT3G22850 "AT3G22850" [Arabido	0.989	0.766	0.763	3.4e-77
TAIR|locus:2170822	251	AT5G43830 "AT5G43830" [Arabido	0.989	0.756	0.732	1.7e-73
TAIR|locus:2182137	234	AILP1 "AT5G19140" [Arabidopsis	0.989	0.811	0.460	2.7e-45
TAIR|locus:2090116	253	AT3G15450 "AT3G15450" [Arabido	0.973	0.739	0.468	2.2e-43
TAIR|locus:2123994	250	AT4G27450 "AT4G27450" [Arabido	0.973	0.748	0.466	2.8e-43
UNIPROTKB|P22106	554	asnB [Escherichia coli K-12 (t	0.526	0.182	0.307	1.5e-06
DICTYBASE|DDB_G0286059	557	asns "asparagine synthetase" [	0.442	0.152	0.336	2.7e-05
UNIPROTKB|Q9KTB2	554	VC_0991 "Asparagine synthetase	0.479	0.166	0.287	8.7e-05
TIGR_CMR|VC_0991	554	VC_0991 "asparagine synthetase	0.479	0.166	0.287	8.7e-05
FB|FBgn0041607	558	asparagine-synthetase "asparag	0.5	0.172	0.276	0.00049

TAIR|locus:2084598 AT3G22850 "AT3G22850" [Arabidopsis thaliana (taxid:3702)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 145/190 (76%), Positives = 164/190 (86%)

Query:     1 MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNR 60
             MLA+FDK+VAK PEALQ  +  S CALK+  L NHFSSV+PG+VT+NLGSSG IA SL +
Sbjct:     1 MLAIFDKNVAKTPEALQGQEGGSVCALKDRFLPNHFSSVYPGAVTINLGSSGFIACSLEK 60

Query:    61 QNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPA 120
             QNPLLPRLFAVVDD+FC+FQGHIENV +LKQQYGL KTA EV IVIEAYRTLRDRGPY A
Sbjct:    61 QNPLLPRLFAVVDDMFCIFQGHIENVPILKQQYGLTKTATEVTIVIEAYRTLRDRGPYSA 120

Query:   121 DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGK 180
             +QVVRD QGKF F+LYD S++N FLA D DGSVP +WGTD+EGHLV+SDDVE VKKGCGK
Sbjct:   121 EQVVRDFQGKFGFMLYDCSTQNVFLAGDVDGSVPLYWGTDAEGHLVVSDDVETVKKGCGK 180

Query:   181 SFAPFPKGIY 190
             SFAPFPKG +
Sbjct:   181 SFAPFPKGCF 190

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2170822 AT5G43830 "AT5G43830" [Arabidopsis thaliana (taxid:3702)]

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 140/191 (73%), Positives = 161/191 (84%)

Query:     1 MLAVFDKSVAKAPEALQSPQT-ESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLN 59
             MLAVF+K+VA +PEALQSP + ESA ALK+G LA HF+SV+P SVT+N GSSG +AYSL+
Sbjct:     1 MLAVFEKTVANSPEALQSPHSSESAFALKDGSLATHFASVNPNSVTLNFGSSGFVAYSLD 60

Query:    60 RQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYP 119
               +P +PRLFAVVDDIFCLFQGHIEN+  LKQQYGLNK  NE IIVIEAYRTLRDRGPYP
Sbjct:    61 NPDPRVPRLFAVVDDIFCLFQGHIENLPFLKQQYGLNKITNEAIIVIEAYRTLRDRGPYP 120

Query:   120 ADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCG 179
              D+VVRD  GKFAFIL+DS  K  F A+DADGSVPFFWGTD+EGHLV SD+ E+VKKGC 
Sbjct:   121 VDKVVRDFHGKFAFILFDSVKKTVFAAADADGSVPFFWGTDAEGHLVFSDNTEMVKKGCA 180

Query:   180 KSFAPFPKGIY 190
             KS+ PFPKG +
Sbjct:   181 KSYGPFPKGCF 191

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2182137 AILP1 "AT5G19140" [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 88/191 (46%), Positives = 126/191 (65%)

Query:     1 MLAVFDKSVAKAPEALQSPQTESACALKNG-LLANHFSSVHPGSVTVNLGSSGVIAYSLN 59
             ML +F  ++   PE L +  + +      G  L N F   +P +V+V +G    +AYS +
Sbjct:     1 MLGIFSGAIVSPPEELVAAGSRTPSPKTTGSTLVNRFVEKNPSAVSVQVGDYVQLAYSHH 60

Query:    60 RQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYP 119
              ++PL PR F   D+IFCLFQG ++N+  LKQQYGL K ANEV++VIEAY+TLRDR PYP
Sbjct:    61 NESPLRPRSFGAKDEIFCLFQGSLDNLGSLKQQYGLAKNANEVLLVIEAYKTLRDRAPYP 120

Query:   120 ADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCG 179
             A+ VV  + G FAF+++D S+   F+ASD  G VP +WG  ++G++  +DDV+++K  CG
Sbjct:   121 ANHVVAHLSGDFAFVVFDKSTSTLFVASDQVGKVPLYWGITADGYVAFADDVDLLKGACG 180

Query:   180 KSFAPFPKGIY 190
             KS A FP+G Y
Sbjct:   181 KSLASFPQGCY 191

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010044 "response to aluminum ion" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2090116 AT3G15450 "AT3G15450" [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 90/192 (46%), Positives = 127/192 (66%)

Query:     1 MLAVFDKSVAKAPEALQSPQTE-SACALK-NGLLANHFSSVHPGSV-TVNLGSSGVIAYS 57
             MLA+F K+ A  PE L SP +  S    K  G   + F S H  +  ++N G S V+AY+
Sbjct:     1 MLAIFQKAFAHPPEELNSPASHFSGKTPKLPGETLSDFLSHHQNNAFSMNFGDSAVLAYA 60

Query:    58 LNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLN-KTANEVIIVIEAYRTLRDRG 116
               ++  L  RLF  +D I+C+F G + N+  L +QYGL+ K +NE + VIEAYRTLRDRG
Sbjct:    61 -RQETSLRQRLFCGLDGIYCMFLGRLNNLCTLNRQYGLSGKNSNEAMFVIEAYRTLRDRG 119

Query:   117 PYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKK 176
             PYPADQV+R ++G FAF++YD+ + + F A  +DG    +WG   +G +V+SDD++I+K+
Sbjct:   120 PYPADQVLRGLEGSFAFVVYDTQTSSVFSALSSDGGESLYWGISGDGSVVMSDDIQIIKQ 179

Query:   177 GCGKSFAPFPKG 188
             GC KSFAPFP G
Sbjct:   180 GCAKSFAPFPNG 191

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2123994 AT4G27450 "AT4G27450" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 90/193 (46%), Positives = 128/193 (66%)

Query:     1 MLAVFDKSVAKAPEALQSPQTESACALKNGL---LANHFSSVHP-GSVTVNLGSSGVIAY 56
             MLA+F ++ A  PE L SP +E  C+ +  L     N F   +P  + +++ G + V+AY
Sbjct:     1 MLAIFHEAFAHPPEELNSPASEK-CSKQPKLPEETLNDFLLRYPLNTFSMSFGQAAVLAY 59

Query:    57 SLNRQN-PLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDR 115
                  +  +  RLF   DDI+CLF G + N+  L +QYGL KT NE + VIEAYRTLRDR
Sbjct:    60 VRPSASFSIHQRLFCGFDDIYCLFFGSLNNLCQLNKQYGLTKTTNEAMFVIEAYRTLRDR 119

Query:   116 GPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVK 175
             GPYPADQVV+D+ G F+F++YDS + + F A  +DG V  +WG  ++G +V+SDD++++K
Sbjct:   120 GPYPADQVVKDLDGSFSFVVYDSKAGSVFTALGSDGGVKLYWGIAADGSVVISDDLDVIK 179

Query:   176 KGCGKSFAPFPKG 188
             +GC KSFAPFP G
Sbjct:   180 EGCAKSFAPFPTG 192

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

UNIPROTKB|P22106 asnB [Escherichia coli K-12 (taxid:83333)]

 Score = 131 (51.2 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 35/114 (30%), Positives = 61/114 (53%)

Query:    81 GHIENVALLKQQYGLN---KTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYD 137
             G I N   L+ +YG     +T ++  +++  Y+   ++GP    + + D+QG FAF LYD
Sbjct:    76 GEIYNHQALRAEYGDRYQFQTGSDCEVILALYQ---EKGP----EFLDDLQGMFAFALYD 128

Query:   138 SSSKNAFLAS-DADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIY 190
             S  K+A+L   D  G +P + G D  G L ++ +++ +   C ++   FP G Y
Sbjct:   129 SE-KDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-RTIKEFPAGSY 180

GO:0005737 "cytoplasm" evidence=IDA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IMP

GO:0006529 "asparagine biosynthetic process" evidence=IEA;IDA;IMP

GO:0009063 "cellular amino acid catabolic process" evidence=IMP

GO:0004066 "asparagine synthase (glutamine-hydrolyzing) activity" evidence=IEA;IDA;IMP

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0006541 "glutamine metabolic process" evidence=IEA;IMP

GO:0016597 "amino acid binding" evidence=IDA

GO:0070981 "L-asparagine biosynthetic process" evidence=IEA

GO:0004071 "aspartate-ammonia ligase activity" evidence=IDA

DICTYBASE|DDB_G0286059 asns "asparagine synthetase" [Dictyostelium discoideum (taxid:44689)]

 Score = 122 (48.0 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 32/95 (33%), Positives = 51/95 (53%)

Query:    97 KTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLAS-DADGSVPF 155
             KT ++   ++  Y    D+G    D  V  + G FAF++Y+  + N+FLA+ D  G VP 
Sbjct:    97 KTHSDCEPILHLYE---DKG----DDFVHMLDGDFAFVVYNKKA-NSFLAARDPIGVVPL 148

Query:   156 FWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIY 190
             + G   +G +  S +++ +K  C K F PFP G Y
Sbjct:   149 YIGWHKDGSIWFSSEMKAIKDDCYK-FQPFPPGHY 182

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0006529 "asparagine biosynthetic process" evidence=IEA;ISS

GO:0004066 "asparagine synthase (glutamine-hydrolyzing) activity" evidence=IEA;ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0070981 "L-asparagine biosynthetic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q9KTB2 VC_0991 "Asparagine synthetase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 118 (46.6 bits), Expect = 8.7e-05, P = 8.7e-05
 Identities = 29/101 (28%), Positives = 53/101 (52%)

Query:    90 KQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDA 149
             K QY   +T ++  +++  YR   D+G   AD ++ ++ G FAF+LYD       +  D 
Sbjct:    89 KGQYEF-QTDSDCEVILALYR---DKG---AD-LLEELNGIFAFVLYDEEKDEYLIGRDH 140

Query:   150 DGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIY 190
              G +P + G D  G+  ++ +++ +   C K+ + FP G Y
Sbjct:   141 IGIIPLYQGHDEHGNFYVASEMKALVPVC-KTLSEFPPGSY 180

GO:0004066 "asparagine synthase (glutamine-hydrolyzing) activity" evidence=ISS

GO:0006529 "asparagine biosynthetic process" evidence=ISS

TIGR_CMR|VC_0991 VC_0991 "asparagine synthetase B, glutamine-hydrolyzing" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 118 (46.6 bits), Expect = 8.7e-05, P = 8.7e-05
 Identities = 29/101 (28%), Positives = 53/101 (52%)

Query:    90 KQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDA 149
             K QY   +T ++  +++  YR   D+G   AD ++ ++ G FAF+LYD       +  D 
Sbjct:    89 KGQYEF-QTDSDCEVILALYR---DKG---AD-LLEELNGIFAFVLYDEEKDEYLIGRDH 140

Query:   150 DGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIY 190
              G +P + G D  G+  ++ +++ +   C K+ + FP G Y
Sbjct:   141 IGIIPLYQGHDEHGNFYVASEMKALVPVC-KTLSEFPPGSY 180

GO:0004066 "asparagine synthase (glutamine-hydrolyzing) activity" evidence=ISS

GO:0006529 "asparagine biosynthetic process" evidence=ISS

FB|FBgn0041607 asparagine-synthetase "asparagine synthetase" [Drosophila melanogaster (taxid:7227)]

 Score = 112 (44.5 bits), Expect = 0.00049, P = 0.00049
 Identities = 29/105 (27%), Positives = 55/105 (52%)

Query:    82 HIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSK 141
             ++E  A + ++ G     ++  +++E Y+       Y  D +++ I G FAF LYD  +K
Sbjct:    93 YLELSAEIAKKRGSYNPMSDCHVILELYQD------YGKD-LLQYITGMFAFALYDRKTK 145

Query:   142 NAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGK--SFAP 184
                LA D  G +P + G D+ G+L ++ +++ +   C K  +F P
Sbjct:   146 EVLLARDPFGIIPMYVGEDASGNLWVASEMKCLVDTCSKVETFTP 190


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      192       192   0.00096  110 3  11 22  0.45    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  149 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.82u 0.19s 18.01t   Elapsed:  00:00:01
  Total cpu time:  17.82u 0.19s 18.01t   Elapsed:  00:00:01
  Start:  Sat May 11 00:56:28 2013   End:  Sat May 11 00:56:29 2013

GO:0006529 "asparagine biosynthetic process" evidence=IEA;ISS

GO:0004066 "asparagine synthase (glutamine-hydrolyzing) activity" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0175001701	hypothetical protein (252 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.V.2829.1	SubName- Full=Putative uncharacterized protein; (566 aa)			•						0.500

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	192
pfam12481	228	pfam12481, DUF3700, Aluminium induced protein	1e-122
cd01910	224	cd01910, Wali7, This domain is present in Wali7, a	1e-112
cd00352	220	cd00352, Gn_AT_II, Glutamine amidotransferases cla	8e-17
PRK09431	554	PRK09431, asnB, asparagine synthetase B; Provision	2e-07
PTZ00077	586	PTZ00077, PTZ00077, asparagine synthetase-like pro	3e-05
PLN02549	578	PLN02549, PLN02549, asparagine synthase (glutamine	1e-04
TIGR01536	466	TIGR01536, asn_synth_AEB, asparagine synthase (glu	0.003
COG0367	542	COG0367, AsnB, Asparagine synthase (glutamine-hydr	0.003

>gnl|CDD|221596 pfam12481, DUF3700, Aluminium induced protein

 Score =  345 bits (887), Expect = e-122
 Identities = 124/190 (65%), Positives = 151/190 (79%), Gaps = 3/190 (1%)

Query: 2   LAVFDKSVAKAPEALQSPQTES-ACALKNG--LLANHFSSVHPGSVTVNLGSSGVIAYSL 58
           LAVF KSVAK PE L SP +   + A K G   L   F S +P +V+VN G S  +AYS 
Sbjct: 1   LAVFHKSVAKPPEELNSPASRLPSSAKKKGPEELLKDFVSANPNAVSVNFGDSAFLAYSH 60

Query: 59  NRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPY 118
           ++Q+PLLPRLFAVVDDIFCLFQGH+EN+A L+QQYGL+KTANE ++VIEAYRTLRDRGPY
Sbjct: 61  SKQSPLLPRLFAVVDDIFCLFQGHLENLASLRQQYGLSKTANEAMLVIEAYRTLRDRGPY 120

Query: 119 PADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGC 178
           PADQVV+D++G FAF+LYDS +   F+A DADGSVP FWG  ++G LV SDD+E++K GC
Sbjct: 121 PADQVVKDLEGSFAFVLYDSKTGTVFVALDADGSVPLFWGIAADGSLVFSDDLELLKAGC 180

Query: 179 GKSFAPFPKG 188
           GKSFAPFP+G
Sbjct: 181 GKSFAPFPQG 190

This domain family is found in eukaryotes, and is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR. This family is related to GATase enzyme domains. Length = 228

>gnl|CDD|238891 cd01910, Wali7, This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum

 Score =  317 bits (815), Expect = e-112
 Identities = 117/187 (62%), Positives = 144/187 (77%), Gaps = 1/187 (0%)

Query: 2   LAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQ 61
           LAVF K+VAK PE L S  +    A     L   F S +P +V V+LG++G +AYS + Q
Sbjct: 1   LAVFSKAVAKPPEELVSAGS-RTPAKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQ 59

Query: 62  NPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPAD 121
           +PL PRLFAV DDIFCLFQGH++N+  LKQQYGL+KTANE ++VIEAYRTLRDRGPYPAD
Sbjct: 60  SPLHPRLFAVKDDIFCLFQGHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPAD 119

Query: 122 QVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKS 181
           QVV+D++G FAF+LYD  +   F+ASDADGSVP +WG  ++G +V SDDVE+VK  CGKS
Sbjct: 120 QVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIAADGSVVFSDDVELVKASCGKS 179

Query: 182 FAPFPKG 188
           FAPFPKG
Sbjct: 180 FAPFPKG 186

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits. Length = 224

>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase)

 Score = 74.8 bits (184), Expect = 8e-17
 Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 73  DDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPY------PADQVVRD 126
             I  +  G I N   L+++        E     E    L +R           +  ++ 
Sbjct: 96  GRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKR 155

Query: 127 IQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFP 186
           + G FAF L+D      F A D  G  P ++G   +G LV + + + +     K     P
Sbjct: 156 LDGPFAFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLP 215

Query: 187 KG 188
            G
Sbjct: 216 PG 217

The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the formation of the beta-lactam ring in the beta-lactamase inhibitor clavulanic acid. GltS synthesizes L-glutamate from 2-oxoglutarate and L-glutamine. These enzymes are generally dimers, but GPATase also exists as a homotetramer. Length = 220

>gnl|CDD|236513 PRK09431, asnB, asparagine synthetase B; Provisional

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 124 VRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFA 183
           + D+ G FAF LYDS      +A D  G +P ++G D  G+L  + +++ +   C K+  
Sbjct: 115 LDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVPVC-KTIK 173

Query: 184 PFPKGIY 190
            FP G Y
Sbjct: 174 EFPPGHY 180

Length = 554

>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein; Provisional

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 129 GKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKG 188
           G FA ++YD  +   F A D  G +P + G   +G +  S +++ +   C +    FP G
Sbjct: 127 GMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKDGSIWFSSELKALHDQCVE-VKQFPPG 185

Query: 189 IY 190
            Y
Sbjct: 186 HY 187

Length = 586

>gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing)

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 34/122 (27%), Positives = 46/122 (37%), Gaps = 30/122 (24%)

Query: 81  GHIENVALLKQQYGLNKTAN----EVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILY 136
           G I N   L+++  L+K       EVI          + G     + V  + G F+F+L 
Sbjct: 76  GEIYNHKELREKLKLHKFRTGSDCEVIA-----HLYEEHGE----EFVDMLDGMFSFVLL 126

Query: 137 DSSSKNAFLASDADGSVPFF--WGTD------SEGHLVLSDDVEIVKKGCGKSFAPFPKG 188
           D+   +   A D  G  P +  WG D      SE    L DD E         F  FP G
Sbjct: 127 DTRDNSFIAARDHIGITPLYIGWGLDGSVWFASEMK-ALCDDCE--------RFEEFPPG 177

Query: 189 IY 190
            Y
Sbjct: 178 HY 179

Length = 578

>gnl|CDD|233454 TIGR01536, asn_synth_AEB, asparagine synthase (glutamine-hydrolyzing)

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 124 VRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKG--CGKS 181
           V  + G FAF L+DS     FLA D  G  P ++  D       S+      K      +
Sbjct: 114 VDRLDGMFAFALWDSEKGELFLARDRFGIKPLYYAYDGGQLYFASE-----IKALLAHPN 168

Query: 182 FAPFPKGIYEI 192
             PFP G    
Sbjct: 169 IKPFPDGAALA 179

This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff [Amino acid biosynthesis, Aspartate family]. Length = 466

>gnl|CDD|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 123 VVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLS 168
            V  + G FAF +YD + +  FLA D  G  P ++ + +E     S
Sbjct: 114 CVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSKNENLAFAS 159

Length = 542

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
cd01910	224	Wali7 This domain is present in Wali7, a protein o	100.0
PLN02549	578	asparagine synthase (glutamine-hydrolyzing)	100.0
PRK09431	554	asnB asparagine synthetase B; Provisional	100.0
PF12481	228	DUF3700: Aluminium induced protein ; InterPro: IPR	100.0
PTZ00077	586	asparagine synthetase-like protein; Provisional	100.0
COG0367	542	AsnB Asparagine synthase (glutamine-hydrolyzing) [	100.0
cd00712	220	AsnB Glutamine amidotransferases class-II (GATase)	100.0
TIGR01536	467	asn_synth_AEB asparagine synthase (glutamine-hydro	100.0
TIGR03104	589	trio_amidotrans asparagine synthase family amidotr	100.0
cd03766	181	Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn	100.0
TIGR03108	628	eps_aminotran_1 exosortase 1 system-associated ami	100.0
PRK08525	445	amidophosphoribosyltransferase; Provisional	100.0
PRK07631	475	amidophosphoribosyltransferase; Provisional	99.98
cd00714	215	GFAT Glutamine amidotransferases class-II (Gn-AT)_	99.98
PRK06388	474	amidophosphoribosyltransferase; Provisional	99.97
KOG0571	543	consensus Asparagine synthase (glutamine-hydrolyzi	99.97
PRK07272	484	amidophosphoribosyltransferase; Provisional	99.97
PRK08341	442	amidophosphoribosyltransferase; Provisional	99.97
PRK07349	500	amidophosphoribosyltransferase; Provisional	99.97
PRK06781	471	amidophosphoribosyltransferase; Provisional	99.97
PLN02440	479	amidophosphoribosyltransferase	99.97
PRK09246	501	amidophosphoribosyltransferase; Provisional	99.97
cd01907	249	GlxB Glutamine amidotransferases class-II (Gn-AT)_	99.97
PRK09123	479	amidophosphoribosyltransferase; Provisional	99.97
PRK07847	510	amidophosphoribosyltransferase; Provisional	99.97
cd00715	252	GPATase_N Glutamine amidotransferases class-II (GN	99.97
cd01909	199	betaLS_CarA_N Glutamine amidotransferases class-II	99.97
PRK05793	469	amidophosphoribosyltransferase; Provisional	99.96
PRK00331	604	glucosamine--fructose-6-phosphate aminotransferase	99.96
TIGR01134	442	purF amidophosphoribosyltransferase. Alternate nam	99.96
TIGR01135	607	glmS glucosamine--fructose-6-phosphate aminotransf	99.96
cd00352	220	Gn_AT_II Glutamine amidotransferases class-II (GAT	99.96
PF13537	125	GATase_7: Glutamine amidotransferase domain; PDB:	99.96
PTZ00295	640	glucosamine-fructose-6-phosphate aminotransferase;	99.95
PF13522	133	GATase_6: Glutamine amidotransferase domain	99.93
COG0034	470	PurF Glutamine phosphoribosylpyrophosphate amidotr	99.93
PLN02981	680	glucosamine:fructose-6-phosphate aminotransferase	99.91
PTZ00394	670	glucosamine-fructose-6-phosphate aminotransferase;	99.91
KOG0572	474	consensus Glutamine phosphoribosylpyrophosphate am	99.9
COG0449	597	GlmS Glucosamine 6-phosphate synthetase, contains	99.87
cd00713	413	GltS Glutamine amidotransferases class-II (Gn-AT),	99.74
cd01908	257	YafJ Glutamine amidotransferases class-II (Gn-AT)_	99.66
KOG0573	520	consensus Asparagine synthase [Amino acid transpor	99.6
TIGR03442	251	conserved hypothetical protein TIGR03442. Members	99.6
PF00310	361	GATase_2: Glutamine amidotransferases class-II; In	99.53
KOG1268	670	consensus Glucosamine 6-phosphate synthetases, con	99.47
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	99.29
PF13230	271	GATase_4: Glutamine amidotransferases class-II; PD	98.25
PF09147	201	DUF1933: Domain of unknown function (DUF1933); Int	98.24
COG0067	371	GltB Glutamate synthase domain 1 [Amino acid trans	98.0
COG0121	252	Predicted glutamine amidotransferase [General func	95.0
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	90.51

>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum

Probab=100.00  E-value=1.3e-44  Score=293.34  Aligned_cols=190  Identities=62%  Similarity=1.050  Sum_probs=170.3

Q ss_pred             eeeeccccccCCcccCCCCCCchhhhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccCCCceeeeCCcEEEEEEE
Q 029533            2 LAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQG   81 (192)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~qP~~~~~~~~~~lv~nG   81 (192)
                      |++|+|.||++||+++++++.+. +..-.++++.+....|+...+.+++.++|+++|...+..+|.+++.++++++++||
T Consensus         1 laif~~~~~~~p~el~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfnG   79 (224)
T cd01910           1 LAVFSKAVAKPPEELVSAGSRTP-AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQG   79 (224)
T ss_pred             CcccccccCCCChHHcCCCcccc-CCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEEe
Confidence            78999999999999998875443 33446799999999999888888888999999988888888878888899999999


Q ss_pred             EEcChHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEec
Q 029533           82 HIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDS  161 (192)
Q Consensus        82 ~I~N~~eL~~~l~~~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~  161 (192)
                      +|||+.+|+++|+..++.+|+|+|+++|+++.++|+++..+++++|+|+|||+|||++++++++|||++|++||||+.+.
T Consensus        80 eIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~~  159 (224)
T cd01910          80 HLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIAA  159 (224)
T ss_pred             EEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEeC
Confidence            99999999999987778899999999999865666666668999999999999999999999999999999999999866


Q ss_pred             CCeEEEEecchhhhhccCceeEEeCCCeeeC
Q 029533          162 EGHLVLSDDVEIVKKGCGKSFAPFPKGIYEI  192 (192)
Q Consensus       162 ~~~~~faSe~~al~~~~~~~~~~~ppG~~~~  192 (192)
                      +|.++||||+++|...|.+.+.+|||||||+
T Consensus       160 dG~l~FASElkaL~~~c~~~~~~FPpG~~~~  190 (224)
T cd01910         160 DGSVVFSDDVELVKASCGKSFAPFPKGCFFH  190 (224)
T ss_pred             CCEEEEEeCHHHhhhhhccEEEEECCCCEEe
Confidence            7899999999999999977899999999985

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.

>PLN02549 asparagine synthase (glutamine-hydrolyzing)

Probab=100.00  E-value=5.4e-38  Score=287.09  Aligned_cols=157  Identities=19%  Similarity=0.303  Sum_probs=142.3

Q ss_pred             hhhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhC-C-C
Q 029533           25 CALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYG-L-N   96 (192)
Q Consensus        25 ~~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~-~-~   96 (192)
                      ....+.+|++.|+|||||+.+++..+..+|+  |+|++++      ||+ ++.++++++++||+|||+.+|+++|. . +
T Consensus        17 ~~~~~~~m~~~l~hRGPD~~g~~~~~~~~Lg--h~RLsI~d~~~g~QP~-~~~~~~~~lv~NGEIyN~~eLr~~L~~~~f   93 (578)
T PLN02549         17 KRSRVLELSRRLRHRGPDWSGLYGNEDCYLA--HERLAIMDPESGDQPL-YNEDKTIVVTANGEIYNHKELREKLKLHKF   93 (578)
T ss_pred             hHHHHHHHHHHhcCcCCCccCEEEeCCeEEE--EeeeeEeCCCCCCCCc-CcCCCCEEEEEEEEEEcHHHHHHHHHhCCC
Confidence            3457889999999999999999998888888  9999864      998 56678899999999999999999986 3 8


Q ss_pred             CCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhh
Q 029533           97 KTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKK  176 (192)
Q Consensus        97 ~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~  176 (192)
                      ++.+|+|+|+++|++      ||. +++++|+|+|||++||..++++++||||+|+|||||+.+.++.++||||+++|..
T Consensus        94 ~t~sD~Evil~ly~~------~G~-~~~~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~~~g~~~fASE~KaL~~  166 (578)
T PLN02549         94 RTGSDCEVIAHLYEE------HGE-EFVDMLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASEMKALCD  166 (578)
T ss_pred             CCCCHHHHHHHHHHH------HHH-HHHHhCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEecCCeEEEEecHHHHHH
Confidence            899999999999998      786 7999999999999999989999999999999999999865678999999999998


Q ss_pred             ccCceeEEeCCCeeeC
Q 029533          177 GCGKSFAPFPKGIYEI  192 (192)
Q Consensus       177 ~~~~~~~~~ppG~~~~  192 (192)
                      .|. .+.+|||||++.
T Consensus       167 ~~~-~I~~lpPGh~l~  181 (578)
T PLN02549        167 DCE-RFEEFPPGHYYS  181 (578)
T ss_pred             HhC-CEEEeCCCeEEE
Confidence            874 599999999973

>PRK09431 asnB asparagine synthetase B; Provisional

Probab=100.00  E-value=6.4e-38  Score=285.75  Aligned_cols=155  Identities=21%  Similarity=0.407  Sum_probs=142.1

Q ss_pred             hhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhC--C-C
Q 029533           26 ALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYG--L-N   96 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~--~-~   96 (192)
                      ...+.+|+++|+|||||+.+++..++++|+  |+|++++      ||+ ++.++++++++||||||+.+|+++|.  . +
T Consensus        18 ~~~~~~m~~~l~hRGPD~~g~~~~~~~~lg--h~RLsIid~~~g~QP~-~~~~~~~~lv~NGEIyN~~eLr~~L~~~~~f   94 (554)
T PRK09431         18 RKKALEMSRLMRHRGPDWSGIYASDNAILG--HERLSIVDVNGGAQPL-YNEDGTHVLAVNGEIYNHQELRAELGDKYAF   94 (554)
T ss_pred             HHHHHHHHHHhhCCCCCcCCEEEeCCeEEE--EEEeeecCCCCCCCCC-CcCCCCEEEEEEEEEecHHHHHHHHhccCCc
Confidence            467889999999999999999998888888  9999965      998 67788999999999999999999985  2 7


Q ss_pred             CCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhh
Q 029533           97 KTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKK  176 (192)
Q Consensus        97 ~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~  176 (192)
                      .+.+|+|+|+++|++      ||. +++++|+|+|||++||..++++++||||+|+|||||+.+.++.++||||+++|..
T Consensus        95 ~t~sD~Evil~ly~~------~G~-~~~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faSE~kaL~~  167 (554)
T PRK09431         95 QTGSDCEVILALYQE------KGP-DFLDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVP  167 (554)
T ss_pred             CCCCHHHHHHHHHHH------HHH-HHHHhCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEecchHHHHH
Confidence            899999999999998      887 7999999999999999999999999999999999999864488999999999999


Q ss_pred             ccCceeEEeCCCeee
Q 029533          177 GCGKSFAPFPKGIYE  191 (192)
Q Consensus       177 ~~~~~~~~~ppG~~~  191 (192)
                      .|. .+..|||||++
T Consensus       168 ~~~-~I~~lpPGh~l  181 (554)
T PRK09431        168 VCK-TIKEFPPGHYY  181 (554)
T ss_pred             hcC-CEEEECCCeEE
Confidence            885 59999999987

>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length

Probab=100.00  E-value=7.4e-38  Score=250.28  Aligned_cols=191  Identities=58%  Similarity=1.002  Sum_probs=180.2

Q ss_pred             eeeeccccccCCcccCCCCCC---chhhhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccCCCceeeeCCcEEEE
Q 029533            2 LAVFDKSVAKAPEALQSPQTE---SACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCL   78 (192)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~qP~~~~~~~~~~lv   78 (192)
                      |++|+|+||++||++++|.+.   +..++...++++.+....|++..+.+++++.|+|+|...+..+|..+..-+++.++
T Consensus         1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p~a~s~~~g~~~~lAys~~~~~~l~pR~F~~~DdIfCi   80 (228)
T PF12481_consen    1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANPNAFSMNFGDSAALAYSHSNQSSLHPRLFAGVDDIFCI   80 (228)
T ss_pred             CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCCCeEEEEcCCCEEEEEecCCCCccccccccccCCEEEE
Confidence            789999999999999999853   34578889999999999999999999999999999999998889878888899999


Q ss_pred             EEEEEcChHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEE
Q 029533           79 FQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWG  158 (192)
Q Consensus        79 ~nG~I~N~~eL~~~l~~~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~  158 (192)
                      |-|.|.|...|+++|++.++.+++.+++++|+.++|+||+...+++++|+|.||||+||..++.+++|||+-|.-|||||
T Consensus        81 F~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWG  160 (228)
T PF12481_consen   81 FLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWG  160 (228)
T ss_pred             EecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceEEE
Confidence            99999999999999999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             EecCCeEEEEecchhhhhccCceeEEeCCCeeeC
Q 029533          159 TDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYEI  192 (192)
Q Consensus       159 ~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~~  192 (192)
                      .+.||.++||++...|...|++.+.+||+|++|+
T Consensus       161 i~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~  194 (228)
T PF12481_consen  161 IAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFS  194 (228)
T ss_pred             EeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEE
Confidence            9888999999999999999999999999999985

There are two conserved sequence motifs: YGL and LRDR.

>PTZ00077 asparagine synthetase-like protein; Provisional

Probab=100.00  E-value=1.1e-37  Score=285.52  Aligned_cols=155  Identities=19%  Similarity=0.338  Sum_probs=139.0

Q ss_pred             hHHHHHHHHhHhcCCCCcCeeec-----CCeEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhC-
Q 029533           27 LKNGLLANHFSSVHPGSVTVNLG-----SSGVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYG-   94 (192)
Q Consensus        27 ~~~~~m~~~l~~RGpd~~~~~~~-----~~~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~-   94 (192)
                      ..+.+|+++|+|||||+.+++..     +.+.|+  |+|++++      ||+ ++.++++++++||||||+.+|+++|. 
T Consensus        19 ~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lg--h~RLsIvd~~~g~QP~-~~~d~~~~lv~NGEIYN~~eLr~~L~~   95 (586)
T PTZ00077         19 RKALELSKRLRHRGPDWSGIIVLENSPGTYNILA--HERLAIVDLSDGKQPL-LDDDETVALMQNGEIYNHWEIRPELEK   95 (586)
T ss_pred             HHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEE--eccceecCCCCCCCCc-CCCCCCEEEEEEEEEcCHHHHHHHHHh
Confidence            46788999999999999999874     456677  9999975      998 67778999999999999999999984 


Q ss_pred             --C-CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecc
Q 029533           95 --L-NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDV  171 (192)
Q Consensus        95 --~-~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~  171 (192)
                        . +.+.+|+|+|+++|++      ||.++++++|+|+|||++||..++++++||||+|+|||||+...++.++||||+
T Consensus        96 ~g~~f~t~sD~Evil~ly~~------~G~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~g~~~faSE~  169 (586)
T PTZ00077         96 EGYKFSSNSDCEIIGHLYKE------YGPKDFWNHLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKDGSIWFSSEL  169 (586)
T ss_pred             cCCcCCCCCHHHHHHHHHHH------hCHHHHHHhcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecCCeEEEEecH
Confidence              3 7899999999999998      885479999999999999999999999999999999999997546789999999


Q ss_pred             hhhhhccCceeEEeCCCeee
Q 029533          172 EIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       172 ~al~~~~~~~~~~~ppG~~~  191 (192)
                      ++|...|. .+.+|||||++
T Consensus       170 kaL~~~~~-~I~~lpPGh~l  188 (586)
T PTZ00077        170 KALHDQCV-EVKQFPPGHYY  188 (586)
T ss_pred             HHHHHhcC-CEEEeCCCcEE
Confidence            99998874 59999999997

>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]

Probab=100.00  E-value=5.7e-36  Score=272.30  Aligned_cols=155  Identities=17%  Similarity=0.330  Sum_probs=141.5

Q ss_pred             hhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C-
Q 029533           26 ALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L-   95 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~-   95 (192)
                      ...+.+|.+.|.|||||..+++...+..++  |.|++++      ||+ ...++++++++||||||+.+|++++.   . 
T Consensus        17 ~~~~~~m~~~l~hRGPD~~g~~~~~~~~~g--h~rL~i~d~~~g~QP~-~~~~~~~~l~~NGEIYN~~elr~~l~~~g~~   93 (542)
T COG0367          17 KSIIEEMTKLLRHRGPDDSGVWISLNALLG--HRRLSIVDLSGGRQPM-IKEGGKYAIVYNGEIYNVEELRKELREAGYE   93 (542)
T ss_pred             hHHHHHHHHHhhccCCCccccEecCCceee--eeEEEEeccccCCCCc-ccCCCcEEEEECCEeeeHHHHHHHHHhcCce
Confidence            668999999999999999999998888888  9999965      998 44567799999999999999999996   3 


Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhh
Q 029533           96 NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVK  175 (192)
Q Consensus        96 ~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~  175 (192)
                      |.+.+|+|+|+++|++      ||. +++++|+|+|||++||..+++|+++|||+|+|||||+.+ ++.++||||.++|.
T Consensus        94 f~t~sDtEvil~~y~~------~g~-~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~-~~~l~faSE~Kal~  165 (542)
T COG0367          94 FRTYSDTEVILTLYEE------WGE-DCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSK-NENLAFASEIKALL  165 (542)
T ss_pred             eccccchHHHHHHHHH------HHH-HHHHHhccceEEEEEECCCCEEEEEecCCCccccEEEec-CCceEEEechhhhh
Confidence            8999999999999998      886 799999999999999999999999999999999999996 56799999999999


Q ss_pred             hc-----cCceeEEeCCCeeeC
Q 029533          176 KG-----CGKSFAPFPKGIYEI  192 (192)
Q Consensus       176 ~~-----~~~~~~~~ppG~~~~  192 (192)
                      ..     +. .++++|||++++
T Consensus       166 ~~~~~~~~~-~i~~l~pg~~l~  186 (542)
T COG0367         166 AHPVVRFLR-DIKELPPGHLLE  186 (542)
T ss_pred             hCCcccccC-CeEEcCCCcEEE
Confidence            88     64 599999999873

>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type

Probab=100.00  E-value=7.8e-35  Score=237.55  Aligned_cols=157  Identities=20%  Similarity=0.363  Sum_probs=139.0

Q ss_pred             hhhhHHHHHHHHhHhcCCCCcCeeecCCeEEeeccccccc------CCCceeeeCCcEEEEEEEEEcChHHHHHHhCC--
Q 029533           24 ACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNP------LLPRLFAVVDDIFCLFQGHIENVALLKQQYGL--   95 (192)
Q Consensus        24 ~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~------~qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~~--   95 (192)
                      .....+..|+..|+|||||+.+++..+..+++  |+|+++      .||+ ...++++++++||+|||+.+|+++++.  
T Consensus        14 ~~~~~~~~~~~~l~hRGpd~~~~~~~~~~~lg--h~rl~~~~~~~~~qP~-~~~~~~~~~~~nG~i~N~~~L~~~l~~~~   90 (220)
T cd00712          14 VDRATLERMLDALAHRGPDGSGIWIDEGVALG--HRRLSIIDLSGGAQPM-VSEDGRLVLVFNGEIYNYRELRAELEALG   90 (220)
T ss_pred             chHHHHHHHHHHHhccCCCCCCEEEECCEEEE--EEeeeecCcccCCCCe-EeCCCCEEEEEEEEEeCHHHHHHHHHhcC
Confidence            45678899999999999999999998888888  999884      3897 455678999999999999999998852  


Q ss_pred             --CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchh
Q 029533           96 --NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEI  173 (192)
Q Consensus        96 --~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~a  173 (192)
                        +.+.+|+|+++++|++      ||. +++++|+|+||+++||.++++++++||++|.|||||+.. ++.++||||.++
T Consensus        91 ~~~~~~sD~e~l~~~~~~------~g~-~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~-~~~~~~aSe~~~  162 (220)
T cd00712          91 HRFRTHSDTEVILHLYEE------WGE-DCLERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRD-GGGLAFASELKA  162 (220)
T ss_pred             CcCCCCChHHHHHHHHHH------HhH-HHHHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEE-CCEEEEEcchHH
Confidence              6889999999999997      775 899999999999999998999999999999999999996 578999999999


Q ss_pred             hhhccC--------------------------ceeEEeCCCeee
Q 029533          174 VKKGCG--------------------------KSFAPFPKGIYE  191 (192)
Q Consensus       174 l~~~~~--------------------------~~~~~~ppG~~~  191 (192)
                      |...+.                          +.++.+||||++
T Consensus       163 l~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~~l~pG~~l  206 (220)
T cd00712         163 LLALPGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKLPPGHYL  206 (220)
T ss_pred             HHhcCCCCCCcCHHHHHHHHhcCCCCCCCchhcCceEECCceEE
Confidence            977543                          358999999986

Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.

>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing)

Probab=100.00  E-value=7.8e-35  Score=261.00  Aligned_cols=155  Identities=18%  Similarity=0.305  Sum_probs=137.7

Q ss_pred             hhHHHHHHHHhHhcCCCCcCee-ecCCeEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C
Q 029533           26 ALKNGLLANHFSSVHPGSVTVN-LGSSGVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L   95 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~-~~~~~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~   95 (192)
                      ...+.+|+++|+|||||+.++| ..++++||  |+|++++      ||+ .+.++++++++||+|||+.+|+++|.   .
T Consensus        15 ~~~~~~m~~~l~hRGPD~~g~~~~~~~~~lg--h~rl~i~d~~~~~qP~-~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~   91 (467)
T TIGR01536        15 DEAILRMSDTIAHRGPDASGIEYKDGNAILG--HRRLAIIDLSGGAQPM-SNEGKTYVIVFNGEIYNHEELREELEAKGY   91 (467)
T ss_pred             HHHHHHHHHHhhCcCCCcCCcEEccCCEEEE--EEEeEEeCCCCCCCee-ECCCCCEEEEEeeEEcCHHHHHHHHHhcCC
Confidence            4578999999999999999999 88888888  9999864      997 56678899999999999999999984   3


Q ss_pred             -CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhh
Q 029533           96 -NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIV  174 (192)
Q Consensus        96 -~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al  174 (192)
                       +.+.+|+|+++++|++      ||. +++++|+|+|||++||..+++++++||++|+|||||+.+ ++.++||||+++|
T Consensus        92 ~~~~~~D~e~il~~y~~------~g~-~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL  163 (467)
T TIGR01536        92 TFQTDSDTEVILHLYEE------WGE-ECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASEIKAL  163 (467)
T ss_pred             ccCCCCHHHHHHHHHHH------HHH-HHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEecHHHH
Confidence             7889999999999998      885 899999999999999999999999999999999999986 6789999999998


Q ss_pred             hhcc---------------------------CceeEEeCCCeee
Q 029533          175 KKGC---------------------------GKSFAPFPKGIYE  191 (192)
Q Consensus       175 ~~~~---------------------------~~~~~~~ppG~~~  191 (192)
                      ...+                           .+.++.+|||++.
T Consensus       164 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~I~~l~pG~~l  207 (467)
T TIGR01536       164 LAHPRNIKPFPDGAALAPGFGFVRVPPPSTFFRGVFELEPGHDL  207 (467)
T ss_pred             HhccccCcCCCCHHHHHHHhccCccCCCCcccCCcEEcCCCeEE
Confidence            7643                           1347888999975

This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.

>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase

Probab=100.00  E-value=1.4e-34  Score=265.91  Aligned_cols=141  Identities=18%  Similarity=0.287  Sum_probs=128.4

Q ss_pred             hhhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccC-------CCceeeeCCcEEEEEEEEEcChHHHHHHhC---
Q 029533           25 CALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPL-------LPRLFAVVDDIFCLFQGHIENVALLKQQYG---   94 (192)
Q Consensus        25 ~~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~-------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---   94 (192)
                      +...+.+|+++|+|||||+.+++..++.+||  |+|++++       ||+ .+.+++++++|||+|||+.+|+++|.   
T Consensus        16 ~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lg--h~rl~i~~~~~~~~QP~-~~~~~~~~~v~nGeiyN~~eL~~~l~~~g   92 (589)
T TIGR03104        16 DVAAVVRMLAVLAPRGPDAGGVHAQGPVALG--HRRLKIIDLSEASQQPM-VDAELGLALVFNGCIYNYRELRAELEALG   92 (589)
T ss_pred             hHHHHHHHHHhhcCCCCCcCCcEecCCEEEE--EEeeEecCCCcCCCCCe-ECCCCCEEEEECCEecCHHHHHHHHHhcC
Confidence            4567899999999999999999998888888  9998854       897 56778899999999999999999983   


Q ss_pred             C-CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchh
Q 029533           95 L-NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEI  173 (192)
Q Consensus        95 ~-~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~a  173 (192)
                      . +.+.+|+|+++++|++      ||. +++++|+|+|||++||..+++++++|||+|+|||||+.+ ++.++||||+++
T Consensus        93 ~~f~~~sD~Evil~~y~~------~G~-~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~ka  164 (589)
T TIGR03104        93 YRFFSDGDTEVILKAYHA------WGR-DCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAED-AGRLRFASSLPA  164 (589)
T ss_pred             CcccCCCHHHHHHHHHHH------HHH-HHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEe-CCEEEEEeCHHH
Confidence            3 7889999999999998      886 899999999999999999999999999999999999985 578999999999


Q ss_pred             hhh
Q 029533          174 VKK  176 (192)
Q Consensus       174 l~~  176 (192)
                      |+.
T Consensus       165 Ll~  167 (589)
T TIGR03104       165 LLA  167 (589)
T ss_pred             HHh
Confidence            974

Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.

>cd03766 Gn_AT_II_novel Gn_AT_II_novel

Probab=100.00  E-value=1.1e-33  Score=224.95  Aligned_cols=155  Identities=17%  Similarity=0.211  Sum_probs=123.7

Q ss_pred             hhHHHHHHHHhHhcCCCCcCeeecCC--eEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhCCCC
Q 029533           26 ALKNGLLANHFSSVHPGSVTVNLGSS--GVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYGLNK   97 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~~~~~--~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~~~~   97 (192)
                      ...+.+|+++|+|||||+.+++..+.  ..+.++|+|++++      ||+ ...+++++++|||+|||+.+|++      
T Consensus        18 ~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~-~~~~~~~~lv~NGeIyN~~~l~~------   90 (181)
T cd03766          18 SLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPL-VDQSTGNVLQWNGELYNIDGVED------   90 (181)
T ss_pred             hhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCC-EeCCCCEEEEECCEEECcccccC------
Confidence            35678999999999999999887532  2344448888854      998 44456899999999999999874      


Q ss_pred             CCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEec-CCeEEEEecchhhhh
Q 029533           98 TANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDS-EGHLVLSDDVEIVKK  176 (192)
Q Consensus        98 ~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~-~~~~~faSe~~al~~  176 (192)
                      +.+|+|+++++|++..+.. .++.+++++|+|+|||++||..+++++++|||+|+|||||+... ++.++|||+..... 
T Consensus        91 s~sDtEvi~~l~~~~g~~~-~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~~~~~~l~~aS~~~~~~-  168 (181)
T cd03766          91 EENDTEVIFELLANCSSES-QDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLDPNGFELSISSVSGSSS-  168 (181)
T ss_pred             CCCHHHHHHHHHHHHhhhH-HHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCCcCcEEEeeCCCCcEEEEEccCCCC-
Confidence            6899999999998721100 13458999999999999999989999999999999999999864 67899999976432 


Q ss_pred             ccCceeEEeCCCeee
Q 029533          177 GCGKSFAPFPKGIYE  191 (192)
Q Consensus       177 ~~~~~~~~~ppG~~~  191 (192)
                       . ....++||+-+|
T Consensus       169 -~-~~~~e~~~~g~~  181 (181)
T cd03766         169 -G-SGFQEVLAGGIY  181 (181)
T ss_pred             -C-CceEECCCCccC
Confidence             1 258999996553

This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet

>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1

Probab=100.00  E-value=2.7e-33  Score=259.04  Aligned_cols=157  Identities=18%  Similarity=0.278  Sum_probs=138.7

Q ss_pred             hhhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C
Q 029533           25 CALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L   95 (192)
Q Consensus        25 ~~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~   95 (192)
                      +...+.+|+++|.|||||+.+++..++.+||  |+|++++      ||+ .+.+++++++|||+|||+.+|+++|.   .
T Consensus        17 ~~~~~~~m~~~l~hRGpD~~g~~~~~~~~lg--h~rl~i~d~~~~~qP~-~~~~~~~~lv~nGei~N~~eL~~~l~~~g~   93 (628)
T TIGR03108        17 DRDLLRRMNDAQAHRGPDGGGVHVEPGIGLG--HRRLSIIDLSGGQQPL-FNEDGSVVVVFNGEIYNFQELVAELQALGH   93 (628)
T ss_pred             cHHHHHHHHHHhcCCCCCccCeEeeCCEEEE--EEeeeecCCCCCCCCc-CcCCCCEEEEECCeECCHHHHHHHHHhcCC
Confidence            4457899999999999999999998888888  9999864      998 56778999999999999999999873   3


Q ss_pred             -CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhh
Q 029533           96 -NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIV  174 (192)
Q Consensus        96 -~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al  174 (192)
                       +.+.+|+|+++++|++      ||. +++++|+|+|||++||+.+++++++||++|+|||||+...++.++||||+++|
T Consensus        94 ~~~~~sD~Evi~~~~~~------~g~-~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~faSe~~al  166 (628)
T TIGR03108        94 VFRTRSDTEVIVHAWEE------WGE-ACVERFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFGSELKAL  166 (628)
T ss_pred             ccCCCChHHHHHHHHHH------HHH-HHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEEecHHHH
Confidence             7889999999999998      886 89999999999999999999999999999999999997545789999999998


Q ss_pred             hhcc--------------------------CceeEEeCCCeee
Q 029533          175 KKGC--------------------------GKSFAPFPKGIYE  191 (192)
Q Consensus       175 ~~~~--------------------------~~~~~~~ppG~~~  191 (192)
                      ....                          .+.|+.+||||+.
T Consensus       167 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~gI~~l~pG~~l  209 (628)
T TIGR03108       167 TAHPSLPRELDPLAVEDYFAYGYVPDPRTIFKGVKKLEPGHTL  209 (628)
T ss_pred             HhCCCCCCCCCHHHHHHHHhcCCCCCCCchhcCcEEECCCeEE
Confidence            6531                          1358999999985

The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.

>PRK08525 amidophosphoribosyltransferase; Provisional

Probab=100.00  E-value=6.9e-32  Score=240.55  Aligned_cols=164  Identities=13%  Similarity=0.143  Sum_probs=132.9

Q ss_pred             hhHHHHHHHHhHhcCCCCcCeeecC-------------------------CeEEeecccccccC--------CCceee-e
Q 029533           26 ALKNGLLANHFSSVHPGSVTVNLGS-------------------------SGVIAYSLNRQNPL--------LPRLFA-V   71 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~~~~-------------------------~~~l~~~~~r~~~~--------qP~~~~-~   71 (192)
                      ...+..|+.+|+|||+|+.|++...                         .+.++++|+||+++        ||+... .
T Consensus        14 ~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~~iGH~R~at~g~~~~~naqP~~~~~~   93 (445)
T PRK08525         14 AKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEIAIGHNRYSTAGNDSILDAQPVFARYD   93 (445)
T ss_pred             HHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcEEEeecccccCCCCCCCCCCCeEeecC
Confidence            3566789999999999999986521                         11244459999854        998432 4


Q ss_pred             CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC-chHHHHhccccceeEEEEEeCCCCEEEEE
Q 029533           72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNAFLA  146 (192)
Q Consensus        72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~-~g~~~~~~~L~G~fa~vi~d~~~~~l~~a  146 (192)
                      +++++++|||+|||+.+|+++|.   . |.+.+|+|+++++|.+..+... .++.+++++|+|+|||+++|+  ++++++
T Consensus        94 ~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~~~~~ea~~~~~~~L~G~fa~vi~~~--~~l~~~  171 (445)
T PRK08525         94 LGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKKESLKDRIIEALKKIIGAYCLVLLSR--SKMFAI  171 (445)
T ss_pred             CCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCceEEEEEeC--CEEEEE
Confidence            67899999999999999999983   3 8899999999999976321110 234579999999999999984  789999


Q ss_pred             EcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       147 RD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      ||++|+|||||+..+++.++||||.++|..++.+.+++++||++.
T Consensus       172 RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v  216 (445)
T PRK08525        172 RDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEML  216 (445)
T ss_pred             ECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEE
Confidence            999999999999754567999999999988777778999999986

>PRK07631 amidophosphoribosyltransferase; Provisional

Probab=99.98  E-value=2.4e-31  Score=237.95  Aligned_cols=163  Identities=15%  Similarity=0.137  Sum_probs=133.7

Q ss_pred             hhHHHHHHHHhHhcCCCCcCeeecC-------------------------CeEEeecccccccC--------CCcee-ee
Q 029533           26 ALKNGLLANHFSSVHPGSVTVNLGS-------------------------SGVIAYSLNRQNPL--------LPRLF-AV   71 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~~~~-------------------------~~~l~~~~~r~~~~--------qP~~~-~~   71 (192)
                      ...+..++.+|+|||+|+.|+....                         .+.++++|+|++++        ||++. +.
T Consensus        24 ~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~gIGH~RysT~G~~~~~n~QP~~~~~~  103 (475)
T PRK07631         24 AQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKAAIGHVRYATAGGGGYENVQPLLFRSQ  103 (475)
T ss_pred             HHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCEEEEEeeccccCCCCcCCcCCeEeEcC
Confidence            4567789999999999999976411                         12244559999754        99853 34


Q ss_pred             CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC-chHHHHhccccceeEEEEEeCCCCEEEEE
Q 029533           72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNAFLA  146 (192)
Q Consensus        72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~-~g~~~~~~~L~G~fa~vi~d~~~~~l~~a  146 (192)
                      +++++++|||+|+|+++|+++|.   . |.+.+|+|+++++|.+...... .++.+++++|+|+|||+++|.  ++++++
T Consensus       104 ~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~~~~~~~~eai~~~~~~l~G~yalvi~~~--~~l~aa  181 (475)
T PRK07631        104 TGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKRSGAPTLKEQIKNALSMLKGAYAFLLMTE--TELYVA  181 (475)
T ss_pred             CCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeEEeC--CEEEEE
Confidence            67899999999999999999983   3 8899999999999986321110 245679999999999999985  689999


Q ss_pred             EcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       147 RD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      |||+|+||||||.. ++.++||||.+||..++.+.+++++|||++
T Consensus       182 RDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv  225 (475)
T PRK07631        182 LDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELL  225 (475)
T ss_pred             ECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEE
Confidence            99999999999996 568999999999988887789999999986

>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type

Probab=99.98  E-value=4.2e-31  Score=215.25  Aligned_cols=157  Identities=14%  Similarity=0.145  Sum_probs=130.3

Q ss_pred             hHHHHHHHHhHhcCCCCcCeeec---------------------------CCeEEeecccccccC--------CCceeee
Q 029533           27 LKNGLLANHFSSVHPGSVTVNLG---------------------------SSGVIAYSLNRQNPL--------LPRLFAV   71 (192)
Q Consensus        27 ~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~~l~~~~~r~~~~--------qP~~~~~   71 (192)
                      ..+..|+.+++|||||+.+++..                           +..+|+  |+|+++.        ||+ ...
T Consensus        14 ~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~ig--H~R~at~g~~~~~n~qPf-~~~   90 (215)
T cd00714          14 DILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIG--HTRWATHGEPTDVNAHPH-RSC   90 (215)
T ss_pred             HHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEEEE--EEEccCCCCCCccCCCCC-CcC
Confidence            56789999999999999998764                           234455  9999853        998 344


Q ss_pred             CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC---chHHHHhccccceeEEEEEeCCC-CEE
Q 029533           72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP---YPADQVVRDIQGKFAFILYDSSS-KNA  143 (192)
Q Consensus        72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~---~g~~~~~~~L~G~fa~vi~d~~~-~~l  143 (192)
                      +++++++|||+|||+.+|+++|.   . +.+.+|+|+++++|.+..+.+.   .+++++++.|+|+|||++||+.+ ++|
T Consensus        91 ~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~fa~~~~d~~~~~~l  170 (215)
T cd00714          91 DGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISKDEPDEI  170 (215)
T ss_pred             CCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccceEEEEEEeCCCCEE
Confidence            57899999999999999999983   3 7889999999999986432211   24557999999999999999876 499


Q ss_pred             EEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          144 FLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       144 ~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      +++||   .|||||+.. ++.++||||.++|...+. .+..+.+|++.
T Consensus       171 ~~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~~~~~~~~  213 (215)
T cd00714         171 VAARN---GSPLVIGIG-DGENFVASDAPALLEHTR-RVIYLEDGDIA  213 (215)
T ss_pred             EEEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcC-EEEEECCCCEE
Confidence            99999   499999985 578999999999999985 58999999875

This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.

>PRK06388 amidophosphoribosyltransferase; Provisional

Probab=99.97  E-value=5.6e-31  Score=235.66  Aligned_cols=164  Identities=12%  Similarity=0.152  Sum_probs=134.6

Q ss_pred             hhhHHHHHHHHhHhcCCCCcCeeecC-C-----------------------eEEeecccccccC--------CCceee-e
Q 029533           25 CALKNGLLANHFSSVHPGSVTVNLGS-S-----------------------GVIAYSLNRQNPL--------LPRLFA-V   71 (192)
Q Consensus        25 ~~~~~~~m~~~l~~RGpd~~~~~~~~-~-----------------------~~l~~~~~r~~~~--------qP~~~~-~   71 (192)
                      ....+..++.+|+|||+|+.|+.... .                       +.++++|+||+++        ||+..+ .
T Consensus        31 ~~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~gIGH~RyaT~G~~~~~naqP~~~~~~  110 (474)
T PRK06388         31 AYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVGVGHTRYSTAGSKGVENAGPFVINSS  110 (474)
T ss_pred             hHHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEEEeeeeeeecCCCCccCCCCeEeecC
Confidence            34578899999999999999977521 1                       1245559999864        898534 3


Q ss_pred             CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcC-CC-chHHHHhccccceeEEEEEeCCCCEEEE
Q 029533           72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDR-GP-YPADQVVRDIQGKFAFILYDSSSKNAFL  145 (192)
Q Consensus        72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~-~~-~g~~~~~~~L~G~fa~vi~d~~~~~l~~  145 (192)
                      .++++++|||+|+|+.+|+++|.   . |.+.+|+|+++++|.+...+ +. .++++++++|+|+|||++++.  ++|++
T Consensus       111 ~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~a  188 (474)
T PRK06388        111 LGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYGLKEGFERSMERLRGAYACALMIN--DRLYA  188 (474)
T ss_pred             CCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceeEEEEEC--CEEEE
Confidence            57899999999999999999984   3 89999999999999643211 10 235679999999999999964  79999


Q ss_pred             EEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          146 ASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       146 aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      +||++|+||||||.. ++.++||||.+||..++.+.+++++||++.
T Consensus       189 ~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv  233 (474)
T PRK06388        189 IRDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVV  233 (474)
T ss_pred             EECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEE
Confidence            999999999999985 567999999999999887789999999985

>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]

Probab=99.97  E-value=2.3e-32  Score=236.16  Aligned_cols=157  Identities=20%  Similarity=0.375  Sum_probs=141.4

Q ss_pred             hhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhC-C-CC
Q 029533           26 ALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYG-L-NK   97 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~-~-~~   97 (192)
                      .....++.+.++|||||-++..+.+...++  |.|++++      ||+ ++.++.+++..||||||+.+||+.+. + ++
T Consensus        17 ~~~~l~ls~~~~hRgpd~sg~~~~~~~~l~--heRLAIvdp~sg~QPi-~~~~~~~~~~vNGEIYNH~~Lr~~~~~~~~~   93 (543)
T KOG0571|consen   17 KPKALELSRRIRHRGPDWSGLAQRNDNILG--HERLAIVDPTSGAQPI-VGEDGTYVVTVNGEIYNHKKLREHCKDFEFQ   93 (543)
T ss_pred             ChhhhhHHHhhcCCCCCcchhheecccccc--ccceeEecCCcCCccc-ccCCCcEEEEECceeccHHHHHHHhhhcccc
Confidence            345677889999999999998877777788  9999976      998 67788888889999999999999987 5 88


Q ss_pred             CCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhc
Q 029533           98 TANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKG  177 (192)
Q Consensus        98 ~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~  177 (192)
                      +.+|+|+|+++|.+      +|.+++...|+|.|||+++|..++++++|||++|++|||||.+.+++++||||.+.|...
T Consensus        94 T~sDcEvIi~lY~k------hg~~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k~l~d~  167 (543)
T KOG0571|consen   94 TGSDCEVIIHLYEK------HGGEQAICMLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFASEMKCLEDD  167 (543)
T ss_pred             cCCCceeeeehHhh------cCchhHHHHhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEeeehhhhhhh
Confidence            89999999999997      444689999999999999999999999999999999999999888999999999999999


Q ss_pred             cCceeEEeCCCeeeC
Q 029533          178 CGKSFAPFPKGIYEI  192 (192)
Q Consensus       178 ~~~~~~~~ppG~~~~  192 (192)
                      |. .++.|||||+|+
T Consensus       168 C~-~i~~fpPgh~y~  181 (543)
T KOG0571|consen  168 CE-KIESFPPGHYYT  181 (543)
T ss_pred             hh-ceeecCCcceee
Confidence            96 589999999984

>PRK07272 amidophosphoribosyltransferase; Provisional

Probab=99.97  E-value=1.7e-30  Score=232.95  Aligned_cols=165  Identities=15%  Similarity=0.152  Sum_probs=134.5

Q ss_pred             hhhHHHHHHHHhHhcCCCCcCeeecC--------------------------CeEEeecccccccC--------CCceee
Q 029533           25 CALKNGLLANHFSSVHPGSVTVNLGS--------------------------SGVIAYSLNRQNPL--------LPRLFA   70 (192)
Q Consensus        25 ~~~~~~~m~~~l~~RGpd~~~~~~~~--------------------------~~~l~~~~~r~~~~--------qP~~~~   70 (192)
                      ....+..++.+|+|||+|+.|+....                          .+.++++|+|++++        ||+...
T Consensus        23 ~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~~~IGH~RysT~G~~~~~naqP~~~~  102 (484)
T PRK07272         23 AAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQAAIGHVRYATAGSASIENIQPFLFH  102 (484)
T ss_pred             HHHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCcEEEEEeeccccCCCCcCCCCCEEee
Confidence            34567899999999999999976521                          02244559999854        998432


Q ss_pred             -eCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC-chHHHHhccccceeEEEEEeCCCCEEE
Q 029533           71 -VVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNAF  144 (192)
Q Consensus        71 -~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~-~g~~~~~~~L~G~fa~vi~d~~~~~l~  144 (192)
                       .+++++++|||+|+|+.+||++|.   . |.+.+|+|++++++.+..+... .++.+++++|+|+|||++++.  ++|+
T Consensus       103 ~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~~~~~eai~~~~~~l~G~ya~~i~~~--~~l~  180 (484)
T PRK07272        103 FHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHNPTFMGKLKEALNTVKGGFAYLLLTE--DKLI  180 (484)
T ss_pred             cCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHccCceeEEEEEC--CEEE
Confidence             357899999999999999999983   3 8899999999999986321110 245689999999999999985  7899


Q ss_pred             EEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          145 LASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       145 ~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      ++|||+|+||||||..+++.++||||.+||..++.+.+++++|||++
T Consensus       181 a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv  227 (484)
T PRK07272        181 AALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIV  227 (484)
T ss_pred             EEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEE
Confidence            99999999999999854567999999999998887788999999986

>PRK08341 amidophosphoribosyltransferase; Provisional

Probab=99.97  E-value=3.7e-30  Score=228.80  Aligned_cols=162  Identities=11%  Similarity=0.121  Sum_probs=131.4

Q ss_pred             hhhHHHHHHHHhHhcCCCCcCeeecC------------------------CeEEeecccccccC------CCceee-eCC
Q 029533           25 CALKNGLLANHFSSVHPGSVTVNLGS------------------------SGVIAYSLNRQNPL------LPRLFA-VVD   73 (192)
Q Consensus        25 ~~~~~~~m~~~l~~RGpd~~~~~~~~------------------------~~~l~~~~~r~~~~------qP~~~~-~~~   73 (192)
                      ....+..++.+|+|||+|+.|+.+.+                        .+.++++|+|++++      ||+... .++
T Consensus        15 ~~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~IGH~R~sT~G~~~~~QP~~~~~~~g   94 (442)
T PRK08341         15 APKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLAIGHVRYSTSGSLSEVQPLEVECCGY   94 (442)
T ss_pred             cHHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEEEEEeeccccCCCcCcCCEEeecCCC
Confidence            44578899999999999999985411                        12344459999965      998543 257


Q ss_pred             cEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhh-cCCC--chHHHHhccccceeEEEEEeCCCCEEEEE
Q 029533           74 DIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLR-DRGP--YPADQVVRDIQGKFAFILYDSSSKNAFLA  146 (192)
Q Consensus        74 ~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~-~~~~--~g~~~~~~~L~G~fa~vi~d~~~~~l~~a  146 (192)
                      +++++|||+|+|+.+|+++|.   . |.+.+|+|++++++.+.. +.+.  .++++++++|+|+|||++++.  ++++++
T Consensus        95 ~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~~~~ai~~~~~~l~G~yal~i~~~--~~l~a~  172 (442)
T PRK08341         95 KIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETGDEFEAMREVFNEVKGAYSVAILFD--GKIIVA  172 (442)
T ss_pred             CEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCceEEEEEEC--CEEEEE
Confidence            899999999999999999984   3 899999999998775422 2121  245678999999999999984  789999


Q ss_pred             EcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       147 RD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      ||++|+||||||. .+ .++||||.+||..++. .+++++|||++
T Consensus       173 RD~~GirPL~~G~-~~-~~~~ASE~~Al~~~~~-~v~~l~PGeiv  214 (442)
T PRK08341        173 RDPVGFRPLSYGE-GD-GHYFASEDSALRMFVN-EIRDVFPGEVF  214 (442)
T ss_pred             EcCCCceEEEEEE-CC-EEEEEeCcHHHHhhCC-eEEEeCCCEEE
Confidence            9999999999998 44 4899999999998874 79999999986

>PRK07349 amidophosphoribosyltransferase; Provisional

Probab=99.97  E-value=3.6e-30  Score=231.44  Aligned_cols=164  Identities=16%  Similarity=0.162  Sum_probs=132.5

Q ss_pred             hhHHHHHHHHhHhcCCCCcCeeecC-------------------------CeEEeecccccccC--------CCceee-e
Q 029533           26 ALKNGLLANHFSSVHPGSVTVNLGS-------------------------SGVIAYSLNRQNPL--------LPRLFA-V   71 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~~~~-------------------------~~~l~~~~~r~~~~--------qP~~~~-~   71 (192)
                      ...+..++.+|+|||+|+.|+....                         .+.++++|+|++++        ||+... .
T Consensus        47 ~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i~IGHvRysT~G~~~~~naQP~~~~~~  126 (500)
T PRK07349         47 AKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDLAVGHTRYSTTGSSRKANAQPAVLETR  126 (500)
T ss_pred             HHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCEEEEEeecccCCCCCccCCCCeEeecC
Confidence            3455689999999999999975411                         11234559999853        998433 2


Q ss_pred             CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCC-Cc--hHHHHhccccceeEEEEEeCCCCEEE
Q 029533           72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRG-PY--PADQVVRDIQGKFAFILYDSSSKNAF  144 (192)
Q Consensus        72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~-~~--g~~~~~~~L~G~fa~vi~d~~~~~l~  144 (192)
                      .++++++|||+|+|+.+||++|.   . |.+.+|+|+++++|.+..+++ .|  ++++++++|+|+|||++++.  ++|+
T Consensus       127 ~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~  204 (500)
T PRK07349        127 LGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRCQGAFSLVIGTP--EGLM  204 (500)
T ss_pred             CCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhEEEEEEeC--CEEE
Confidence            47899999999999999999983   3 889999999999997633222 23  45679999999999999874  7899


Q ss_pred             EEEcCCCCCcEEEEEec---CCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          145 LASDADGSVPFFWGTDS---EGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       145 ~aRD~~G~rPL~~~~~~---~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      ++||++|+||||||...   ++.++||||.+||..++.+.+++++||+++
T Consensus       205 aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv  254 (500)
T PRK07349        205 GVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELV  254 (500)
T ss_pred             EEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEE
Confidence            99999999999999742   357999999999988877789999999986

>PRK06781 amidophosphoribosyltransferase; Provisional

Probab=99.97  E-value=4.2e-30  Score=229.99  Aligned_cols=163  Identities=13%  Similarity=0.178  Sum_probs=133.3

Q ss_pred             hhHHHHHHHHhHhcCCCCcCeee-cCC------------------------eEEeecccccccC--------CCceee-e
Q 029533           26 ALKNGLLANHFSSVHPGSVTVNL-GSS------------------------GVIAYSLNRQNPL--------LPRLFA-V   71 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~~-~~~------------------------~~l~~~~~r~~~~--------qP~~~~-~   71 (192)
                      ...+..++.+|+|||+|+.|+.. +++                        +.++++|+|++++        ||+... .
T Consensus        24 ~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~~IGHvRyaT~G~~~~~naqP~~~~~~  103 (471)
T PRK06781         24 AQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKSAIGHVRYATAGGSEVANVQPLLFRFS  103 (471)
T ss_pred             HHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCEEEEEeEcccCCCCCcCCCCCeEEecC
Confidence            35667899999999999999764 111                        1234459999753        998432 3


Q ss_pred             CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC-chHHHHhccccceeEEEEEeCCCCEEEEE
Q 029533           72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNAFLA  146 (192)
Q Consensus        72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~-~g~~~~~~~L~G~fa~vi~d~~~~~l~~a  146 (192)
                      +++++++|||+|+|+++|+++|.   . |.+.+|+|+++++|.+..+... .++.+++++|+|+||+++++.  ++++++
T Consensus       104 ~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~aa  181 (471)
T PRK06781        104 DHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTKDSLIESVKEALNKVKGAFAYLLLTG--NEMIVA  181 (471)
T ss_pred             CCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCcEEEEEEEC--CEEEEE
Confidence            57899999999999999999984   3 8899999999999986321110 255788999999999999984  789999


Q ss_pred             EcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       147 RD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      ||++|+|||||+.. ++.++||||.++|..++.+.+++++||++.
T Consensus       182 RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv  225 (471)
T PRK06781        182 LDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELL  225 (471)
T ss_pred             ECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEE
Confidence            99999999999996 567999999999998877789999999986

>PLN02440 amidophosphoribosyltransferase

Probab=99.97  E-value=5.2e-30  Score=230.22  Aligned_cols=164  Identities=13%  Similarity=0.113  Sum_probs=132.2

Q ss_pred             hhHHHHHHHHhHhcCCCCcCeeecC-------------------------CeEEeecccccccC--------CCceee-e
Q 029533           26 ALKNGLLANHFSSVHPGSVTVNLGS-------------------------SGVIAYSLNRQNPL--------LPRLFA-V   71 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~~~~-------------------------~~~l~~~~~r~~~~--------qP~~~~-~   71 (192)
                      ...+..|+.+|+|||+|+.++...+                         .+.++++|.|+++.        ||+... .
T Consensus        14 ~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT~G~~~~~n~QPf~~~~~   93 (479)
T PLN02440         14 SRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDIAIGHVRYSTAGASSLKNVQPFVANYR   93 (479)
T ss_pred             HHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcEEEEEEeccccCCCCccCCCCceeecC
Confidence            3567899999999999999976411                         11234449999853        998433 3


Q ss_pred             CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC-chHHHHhccccceeEEEEEeCCCCEEEEE
Q 029533           72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNAFLA  146 (192)
Q Consensus        72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~-~g~~~~~~~L~G~fa~vi~d~~~~~l~~a  146 (192)
                      .++++++|||+|+|+++|+++|.   . +.+.+|+|+++++|.+..+... .++.++++.|+|+||+++||.  ++|+++
T Consensus        94 ~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~a~~~~~~~l~G~fa~vi~~~--~~l~a~  171 (479)
T PLN02440         94 FGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRIVDACEKLKGAYSMVFLTE--DKLVAV  171 (479)
T ss_pred             CCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHhccceeeeEEEC--CEEEEE
Confidence            46799999999999999999984   2 7899999999999975211110 134579999999999999995  579999


Q ss_pred             EcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       147 RD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      ||++|+|||||+..+++.++||||.++|..++.+.+++++|||++
T Consensus       172 RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv  216 (479)
T PLN02440        172 RDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVI  216 (479)
T ss_pred             ECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEE
Confidence            999999999999754567999999999998877789999999986

>PRK09246 amidophosphoribosyltransferase; Provisional

Probab=99.97  E-value=4.9e-30  Score=231.60  Aligned_cols=162  Identities=11%  Similarity=0.072  Sum_probs=132.0

Q ss_pred             hHHHHHHHHhHhcCCCCcCeee---------------------------cCCeEEeecccccccC--------CCceeee
Q 029533           27 LKNGLLANHFSSVHPGSVTVNL---------------------------GSSGVIAYSLNRQNPL--------LPRLFAV   71 (192)
Q Consensus        27 ~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~~l~~~~~r~~~~--------qP~~~~~   71 (192)
                      ..+..|+.+|+|||||+.|++.                           .+..++|  |.|+++.        ||++.+.
T Consensus        15 ~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IG--HvRysT~G~~~~~n~QP~~~~~   92 (501)
T PRK09246         15 QSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNMGIG--HVRYPTAGSSSSAEAQPFYVNS   92 (501)
T ss_pred             HHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCEEEE--EEcCCcCCCCCcccCCCEEEeC
Confidence            4677899999999999999875                           1334455  9999754        9985555


Q ss_pred             CCcEEEEEEEEEcChHHHHHHhC-----CCCCCCHHHHHHHHHHHhhcC--C------C--chHHHHhccccceeEEEEE
Q 029533           72 VDDIFCLFQGHIENVALLKQQYG-----LNKTANEVIIVIEAYRTLRDR--G------P--YPADQVVRDIQGKFAFILY  136 (192)
Q Consensus        72 ~~~~~lv~nG~I~N~~eL~~~l~-----~~~~~~D~e~l~~ly~~~~~~--~------~--~g~~~~~~~L~G~fa~vi~  136 (192)
                      ..+++++|||+|+|+++|+++|.     .+.+.+|+|++++++.+....  +      .  .++.++++.|+|+||++++
T Consensus        93 ~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai~~~~~~l~Gays~v~~  172 (501)
T PRK09246         93 PYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAVAAVHRRVRGAYAVVAM  172 (501)
T ss_pred             CCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcccceeeEEE
Confidence            55699999999999999999883     278899999999999753111  1      1  2455789999999999988


Q ss_pred             eCCCCEEEEEEcCCCCCcEEEEEec---CCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          137 DSSSKNAFLASDADGSVPFFWGTDS---EGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       137 d~~~~~l~~aRD~~G~rPL~~~~~~---~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      .. .++|+++||++|+|||||+..+   ++.++||||.+||..++.+.+++++|||++
T Consensus       173 ~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv  229 (501)
T PRK09246        173 II-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAI  229 (501)
T ss_pred             ec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeCCCeEE
Confidence            43 4679999999999999999852   347999999999999887889999999986

>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type

Probab=99.97  E-value=5.6e-30  Score=212.99  Aligned_cols=162  Identities=14%  Similarity=0.113  Sum_probs=130.8

Q ss_pred             hhhHHHHHHHHhHhcCC-CCcCeeecC----------------------------------CeEEeecccccccC-----
Q 029533           25 CALKNGLLANHFSSVHP-GSVTVNLGS----------------------------------SGVIAYSLNRQNPL-----   64 (192)
Q Consensus        25 ~~~~~~~m~~~l~~RGp-d~~~~~~~~----------------------------------~~~l~~~~~r~~~~-----   64 (192)
                      ....+..|+.+|+|||+ |+.++++..                                  .+.++++|+|+++.     
T Consensus        15 ~~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~~~~~~~~~~igH~R~aT~g~~~~   94 (249)
T cd01907          15 VGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYHWIAHTRQPTNSAVWW   94 (249)
T ss_pred             cHHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcCchheEEEEEEEEEeccCCCCCCc
Confidence            45678899999999999 999987631                                  13344559999753     


Q ss_pred             ---CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcC-CC-------------------
Q 029533           65 ---LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDR-GP-------------------  117 (192)
Q Consensus        65 ---qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~-~~-------------------  117 (192)
                         ||+ ..  ++++++|||+|+|+.+|+++|.   . +.+.+|+|+++++++...+. +.                   
T Consensus        95 ~n~qP~-~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g~~~~a~~~~i~~~~~~~~~~  171 (249)
T cd01907          95 YGAHPF-SI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERELL  171 (249)
T ss_pred             cCCCCe-ec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCChHHHHHHHhcCCHhHHHHH
Confidence               997 22  4899999999999999999884   3 78999999999998753221 21                   


Q ss_pred             --chHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhcc---CceeEEeCCCeeeC
Q 029533          118 --YPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGC---GKSFAPFPKGIYEI  192 (192)
Q Consensus       118 --~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~---~~~~~~~ppG~~~~  192 (192)
                        ..+..+++.|+|+|||++++.  ++++++|||+|.|||||+.. ++.++||||.++|...+   .+.+.+++||++++
T Consensus       172 ~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~~~~~~~~~~~l~pGe~v~  248 (249)
T cd01907         172 LALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASEECAIREIPDRDNAKVWEPRPGEYVI  248 (249)
T ss_pred             HHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEcHHHHhccCccchheEecCCCCceEe
Confidence              022357899999999999985  67999999999999999986 57899999999999875   46789999999974

GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.

>PRK09123 amidophosphoribosyltransferase; Provisional

Probab=99.97  E-value=8.9e-30  Score=228.42  Aligned_cols=164  Identities=12%  Similarity=0.123  Sum_probs=133.1

Q ss_pred             hhhHHHHHHHHhHhcCCCCcCeeecCC--------------------------eEEeecccccccC--------CCceee
Q 029533           25 CALKNGLLANHFSSVHPGSVTVNLGSS--------------------------GVIAYSLNRQNPL--------LPRLFA   70 (192)
Q Consensus        25 ~~~~~~~m~~~l~~RGpd~~~~~~~~~--------------------------~~l~~~~~r~~~~--------qP~~~~   70 (192)
                      ....+..++.+|+|||+|+.|+....+                          +.++++|+|++++        ||+...
T Consensus        33 ~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~~~IGH~R~sT~G~~~~~n~QP~~~~  112 (479)
T PRK09123         33 AAALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGNRAIGHVRYSTTGETILRNVQPLFAE  112 (479)
T ss_pred             hHHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCCEEEEEEecccCCCCCcCCCCCceee
Confidence            445678899999999999999764211                          1234449999854        998433


Q ss_pred             -eCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC-chHHHHhccccceeEEEEEeCCCCEEE
Q 029533           71 -VVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNAF  144 (192)
Q Consensus        71 -~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~-~g~~~~~~~L~G~fa~vi~d~~~~~l~  144 (192)
                       .+++++++|||+|+|+.+||++|.   . +.+.+|+|++++++.+..+... .++.++++.|+|+||+++|+.  ++++
T Consensus       113 ~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~~~~~eai~~~~~~L~G~ya~vil~~--~~l~  190 (479)
T PRK09123        113 LEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRKASFLDRFIDALRQVEGAYSLVALTN--TKLI  190 (479)
T ss_pred             cCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhcceeEEEEEC--CEEE
Confidence             367899999999999999999983   3 7899999999999975321110 134579999999999999985  6999


Q ss_pred             EEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          145 LASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       145 ~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      ++||++|+|||||+.. ++.++||||.++|..+..+.+++++||+++
T Consensus       191 a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv  236 (479)
T PRK09123        191 GARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELV  236 (479)
T ss_pred             EEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEE
Confidence            9999999999999986 578999999999987766779999999986

>PRK07847 amidophosphoribosyltransferase; Provisional

Probab=99.97  E-value=1.9e-29  Score=227.22  Aligned_cols=163  Identities=14%  Similarity=0.148  Sum_probs=132.0

Q ss_pred             hHHHHHHHHhHhcCCCCcCeeecCC-------------------------eEEeecccccccC--------CCceee--e
Q 029533           27 LKNGLLANHFSSVHPGSVTVNLGSS-------------------------GVIAYSLNRQNPL--------LPRLFA--V   71 (192)
Q Consensus        27 ~~~~~m~~~l~~RGpd~~~~~~~~~-------------------------~~l~~~~~r~~~~--------qP~~~~--~   71 (192)
                      ..+..++.+|+|||+|+.|+...++                         +.++++|+|+++.        ||+...  .
T Consensus        38 ~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i~IGHvR~sT~G~~~~~naQP~~~~~~~  117 (510)
T PRK07847         38 KLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHVAIGHCRYSTTGASTWENAQPTFRATAA  117 (510)
T ss_pred             HHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcEEEEeccCCcCCCCcccCCCCcCcccCC
Confidence            4567899999999999999765211                         1234559999863        998432  2


Q ss_pred             CCcEEEEEEEEEcChHHHHHHhC---C------CCCCCHHHHHHHHHHHhhcCCC--chHHHHhccccceeEEEEEeCCC
Q 029533           72 VDDIFCLFQGHIENVALLKQQYG---L------NKTANEVIIVIEAYRTLRDRGP--YPADQVVRDIQGKFAFILYDSSS  140 (192)
Q Consensus        72 ~~~~~lv~nG~I~N~~eL~~~l~---~------~~~~~D~e~l~~ly~~~~~~~~--~g~~~~~~~L~G~fa~vi~d~~~  140 (192)
                      .++++++|||+|+|+.+|+++|.   .      +.+.+|+|+|++++.+..+.+.  .++.++++.|+|+|||+++|.  
T Consensus       118 ~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~~~eai~~~~~~l~G~yA~vi~d~--  195 (510)
T PRK07847        118 GGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALELLPTVRGAFCLVFMDE--  195 (510)
T ss_pred             CCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhhhheEEEEEEC--
Confidence            57899999999999999999883   2      6899999999999986322111  245579999999999999995  


Q ss_pred             CEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeeeC
Q 029533          141 KNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYEI  192 (192)
Q Consensus       141 ~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~~  192 (192)
                      ++|+++||++|+|||||+.. ++.++||||.++|.....+.++++||||+++
T Consensus       196 ~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv~  246 (510)
T PRK07847        196 HTLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELIA  246 (510)
T ss_pred             CEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEEE
Confidence            78999999999999999996 5679999999999987667799999999863

>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type

Probab=99.97  E-value=2.5e-29  Score=209.28  Aligned_cols=165  Identities=12%  Similarity=0.136  Sum_probs=131.8

Q ss_pred             hhHHHHHHHHhHhcCCCCcCeeecCC-------------------------eEEeecccccccC--------CCceee-e
Q 029533           26 ALKNGLLANHFSSVHPGSVTVNLGSS-------------------------GVIAYSLNRQNPL--------LPRLFA-V   71 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~~~~~-------------------------~~l~~~~~r~~~~--------qP~~~~-~   71 (192)
                      ...+..|++.|+|||||+.++....+                         +.++++|+|+++.        ||+... .
T Consensus        13 ~~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~lgH~R~at~g~~~~~n~qPf~~~~~   92 (252)
T cd00715          13 ARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTAGSSSLENAQPFVVNSP   92 (252)
T ss_pred             HHHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEEEEEEEcccCCCCCccCCCCcEEecC
Confidence            45678999999999999999764211                         1133449998853        998432 2


Q ss_pred             CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC--chHHHHhccccceeEEEEEeCCCCEEEE
Q 029533           72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP--YPADQVVRDIQGKFAFILYDSSSKNAFL  145 (192)
Q Consensus        72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~--~g~~~~~~~L~G~fa~vi~d~~~~~l~~  145 (192)
                      +++++++|||+|+|+++|+++|.   . +.+.+|+|++++++.+..+++.  .+++++++.|+|.||++++|.  ++|++
T Consensus        93 ~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~~al~~~~~~l~G~~a~~~~d~--~~l~~  170 (252)
T cd00715          93 LGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKGAYSLVIMTA--DGLIA  170 (252)
T ss_pred             CCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHHHHHHHHHHhccCceEEEEEEC--CEEEE
Confidence            57899999999999999999884   2 6788999999999986322111  234579999999999999997  89999


Q ss_pred             EEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeeeC
Q 029533          146 ASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYEI  192 (192)
Q Consensus       146 aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~~  192 (192)
                      +||++|.|||||+...++.++||||.++|.....+.++++|||++++
T Consensus       171 ~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~  217 (252)
T cd00715         171 VRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVV  217 (252)
T ss_pred             EECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEE
Confidence            99999999999998643789999999999886545789999999863

This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.

>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type

Probab=99.97  E-value=1.5e-29  Score=203.47  Aligned_cols=111  Identities=17%  Similarity=0.261  Sum_probs=98.8

Q ss_pred             eCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEE
Q 029533           71 VVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLA  146 (192)
Q Consensus        71 ~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~a  146 (192)
                      ..+++++++||||||+.+|+++|.   . +.+.+|+|+++++|++      ||. +++++|+|+|||+|||++ ++|++|
T Consensus        48 ~~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~------~G~-~~l~~L~G~FAfai~D~~-~~L~la  119 (199)
T cd01909          48 RSETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTR------LGL-HAFRLAEGDFCFFIEDGN-GRLTLA  119 (199)
T ss_pred             eCCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHH------HhH-HHHHHcCEEEEEEEEcCC-CEEEEE
Confidence            345799999999999999999984   2 7889999999999998      897 899999999999999998 999999


Q ss_pred             EcCCCCCcEEEEEecCCeEEEEecchhhhhcc-----------------CceeEEeCCCeee
Q 029533          147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGC-----------------GKSFAPFPKGIYE  191 (192)
Q Consensus       147 RD~~G~rPL~~~~~~~~~~~faSe~~al~~~~-----------------~~~~~~~ppG~~~  191 (192)
                      |||+|+|||||...  +.++||||+++|....                 .+.++.+|||++.
T Consensus       120 RDr~GikPLYy~~~--~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG~~l  179 (199)
T cd01909         120 TDHAGSVPVYLVQA--GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPGTVN  179 (199)
T ss_pred             ECCCCCcCeEEEEC--CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCCcEE
Confidence            99999999999884  7899999999997531                 1358999999986

Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (

>PRK05793 amidophosphoribosyltransferase; Provisional

Probab=99.96  E-value=5.1e-29  Score=223.31  Aligned_cols=163  Identities=13%  Similarity=0.146  Sum_probs=133.1

Q ss_pred             hhHHHHHHHHhHhcCCCCcCeeecC-------------------------CeEEeecccccccC--------CCceee-e
Q 029533           26 ALKNGLLANHFSSVHPGSVTVNLGS-------------------------SGVIAYSLNRQNPL--------LPRLFA-V   71 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~~~~-------------------------~~~l~~~~~r~~~~--------qP~~~~-~   71 (192)
                      .+.+..++.+|+|||+|+.|+...+                         .+.++++|+|+++.        ||+... .
T Consensus        29 ~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~~iGHvR~sT~G~~~~~n~qPf~~~~~  108 (469)
T PRK05793         29 ASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNSAIGHVRYSTTGASDLDNAQPLVANYK  108 (469)
T ss_pred             HHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcEEEEEeecccCCCCCCCCCCCeEeecC
Confidence            3456789999999999999976421                         12244459999854        998443 3


Q ss_pred             CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC-chHHHHhccccceeEEEEEeCCCCEEEEE
Q 029533           72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNAFLA  146 (192)
Q Consensus        72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~-~g~~~~~~~L~G~fa~vi~d~~~~~l~~a  146 (192)
                      +++++++|||+|+|+.+|+++|.   . +.+.+|+|++++++.+..+.+. .++.+++++|+|+||+++++.  ++++++
T Consensus       109 ~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~ai~~~~~~l~G~ya~vi~~~--~~l~a~  186 (469)
T PRK05793        109 LGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKALVDAIQAIKGSYALVILTE--DKLIGV  186 (469)
T ss_pred             CCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhhceEEEEEC--CEEEEE
Confidence            57899999999999999999983   3 7899999999999986322111 245679999999999999984  789999


Q ss_pred             EcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       147 RD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      ||++|+|||||+.. ++.++||||.++|..++.+.+++++|||+.
T Consensus       187 RD~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv  230 (469)
T PRK05793        187 RDPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIV  230 (469)
T ss_pred             ECCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEE
Confidence            99999999999996 567999999999998877789999999986

>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed

Probab=99.96  E-value=1e-28  Score=227.70  Aligned_cols=158  Identities=16%  Similarity=0.150  Sum_probs=131.9

Q ss_pred             hhHHHHHHHHhHhcCCCCcCeee---------------------------cCCeEEeecccccccC--------CCceee
Q 029533           26 ALKNGLLANHFSSVHPGSVTVNL---------------------------GSSGVIAYSLNRQNPL--------LPRLFA   70 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~~l~~~~~r~~~~--------qP~~~~   70 (192)
                      ...+..|+.+|+|||||+.|++.                           .+..++|  |+|++++        ||+ .+
T Consensus        14 ~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~ig--H~R~at~g~~~~~n~qP~-~~   90 (604)
T PRK00331         14 AEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTTGIG--HTRWATHGKPTERNAHPH-TD   90 (604)
T ss_pred             HHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcEEEE--EEecCCCCCCccccCCcc-cc
Confidence            35778999999999999999875                           1234555  9999854        898 44


Q ss_pred             eCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCC-C--chHHHHhccccceeEEEEEeCCC-CE
Q 029533           71 VVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRG-P--YPADQVVRDIQGKFAFILYDSSS-KN  142 (192)
Q Consensus        71 ~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~-~--~g~~~~~~~L~G~fa~vi~d~~~-~~  142 (192)
                      .+++++++|||+|||+++|+++|.   . +.+.+|+|+++++|.+..+.+ .  .++++++++|+|+|||++||+.+ ++
T Consensus        91 ~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~d~~~~~~  170 (604)
T PRK00331         91 CSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGAYALAVIDKDEPDT  170 (604)
T ss_pred             CCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccCeeEEEEEecCCCCE
Confidence            568899999999999999999983   3 788999999999998643222 1  24568999999999999999886 89


Q ss_pred             EEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          143 AFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       143 l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      ++++||+   |||||+.. ++.++||||.++|...+. .+++++||++.
T Consensus       171 l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~-~~~~l~pg~~~  214 (604)
T PRK00331        171 IVAARNG---SPLVIGLG-EGENFLASDALALLPYTR-RVIYLEDGEIA  214 (604)
T ss_pred             EEEEECC---CceEEEEc-CCeEEEEECHHHHHHhcC-EEEEECCCeEE
Confidence            9999996   99999995 567999999999999875 58999999986

>TIGR01134 purF amidophosphoribosyltransferase

Probab=99.96  E-value=1e-28  Score=220.18  Aligned_cols=162  Identities=12%  Similarity=0.117  Sum_probs=132.3

Q ss_pred             hhhHHHHHHHHhHhcCCCCcCeeec---------------------------CCeEEeecccccccC--------CCcee
Q 029533           25 CALKNGLLANHFSSVHPGSVTVNLG---------------------------SSGVIAYSLNRQNPL--------LPRLF   69 (192)
Q Consensus        25 ~~~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~~l~~~~~r~~~~--------qP~~~   69 (192)
                      ....+..|+.+|+|||+|+.+++..                           +..++|  |.|+++.        ||+..
T Consensus        13 ~~~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~Ig--HvR~aT~G~~~~~n~QPf~~   90 (442)
T TIGR01134        13 AASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVGIG--HVRYSTAGSSSLSNAQPFVV   90 (442)
T ss_pred             HHHHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEEEE--EEEecCCCCCCccCCCCEEE
Confidence            3456778999999999999998641                           234455  9999853        99854


Q ss_pred             eeCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhc-CCC--chHHHHhccccceeEEEEEeCCCCE
Q 029533           70 AVVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRD-RGP--YPADQVVRDIQGKFAFILYDSSSKN  142 (192)
Q Consensus        70 ~~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~-~~~--~g~~~~~~~L~G~fa~vi~d~~~~~  142 (192)
                      +..++++++|||+|+|+++|+++|.   . +.+.+|+|+++++|.+... .+.  .++.+++++|+|+||++++|  .++
T Consensus        91 ~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~falvi~~--~~~  168 (442)
T TIGR01134        91 NSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRGAYALVIMI--GDG  168 (442)
T ss_pred             eCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHHHHHHHHHHHhCccceEEEEE--CCE
Confidence            4445699999999999999999884   2 7889999999999986321 111  24567999999999999997  479


Q ss_pred             EEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          143 AFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       143 l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      ++++||++|.|||||+.. ++.++||||.++|.....+.+++++||+++
T Consensus       169 L~a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv  216 (442)
T TIGR01134       169 LIAVRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAV  216 (442)
T ss_pred             EEEEECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEE
Confidence            999999999999999986 578999999999987666789999999986

Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.

>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing)

Probab=99.96  E-value=9.5e-29  Score=228.02  Aligned_cols=157  Identities=13%  Similarity=0.128  Sum_probs=131.2

Q ss_pred             hHHHHHHHHhHhcCCCCcCeeec---------------------------CCeEEeecccccccC--------CCceeee
Q 029533           27 LKNGLLANHFSSVHPGSVTVNLG---------------------------SSGVIAYSLNRQNPL--------LPRLFAV   71 (192)
Q Consensus        27 ~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~~l~~~~~r~~~~--------qP~~~~~   71 (192)
                      ..+..|+.+|+|||||+.|++..                           +.+++|  |+|++++        ||+ ...
T Consensus        14 ~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~ig--H~R~at~g~~~~~n~qP~-~~~   90 (607)
T TIGR01135        14 PILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVGIG--HTRWATHGKPTEENAHPH-TDE   90 (607)
T ss_pred             HHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEEEE--EeeccCCCCCCccCCCCc-CcC
Confidence            57889999999999999998762                           233555  9999854        998 445


Q ss_pred             CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCC-C--chHHHHhccccceeEEEEEeCCC-CEE
Q 029533           72 VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRG-P--YPADQVVRDIQGKFAFILYDSSS-KNA  143 (192)
Q Consensus        72 ~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~-~--~g~~~~~~~L~G~fa~vi~d~~~-~~l  143 (192)
                      +++++++|||+|||+.+|+++|.   . +.+.+|+|+++++|.+..+.+ .  .++++++++|+|+|||++||+.+ +++
T Consensus        91 ~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~~a~~i~~~~~~~~l  170 (607)
T TIGR01135        91 GGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGAYALAVLHADHPETL  170 (607)
T ss_pred             CCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCceEEEEEecCCCCEE
Confidence            67899999999999999999984   3 788999999999998743321 1  35668999999999999999875 569


Q ss_pred             EEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          144 FLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       144 ~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      +++||+   |||||+.. ++.++||||.++|...+. .+.++|||+++
T Consensus       171 ~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~l~pg~~~  213 (607)
T TIGR01135       171 VAARSG---SPLIVGLG-DGENFVASDVTALLPVTR-RVIYLEDGDIA  213 (607)
T ss_pred             EEEECC---CceEEEEC-CCeEEEEEChHHHHhhCC-EEEEeCCCeEE
Confidence            999995   99999985 678999999999999884 57899999986

The member from Methanococcus jannaschii contains an intein.

>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase)

Probab=99.96  E-value=2.4e-28  Score=197.25  Aligned_cols=159  Identities=18%  Similarity=0.244  Sum_probs=131.4

Q ss_pred             HHHHHHhHhcCCCCcCeeecC---------------------------CeEEeecccccccC--------CCceeeeCCc
Q 029533           30 GLLANHFSSVHPGSVTVNLGS---------------------------SGVIAYSLNRQNPL--------LPRLFAVVDD   74 (192)
Q Consensus        30 ~~m~~~l~~RGpd~~~~~~~~---------------------------~~~l~~~~~r~~~~--------qP~~~~~~~~   74 (192)
                      ..|+..+.|||||+.+++...                           ..+++  |.|+++.        ||+. ...++
T Consensus        21 ~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--H~R~at~g~~~~~n~hPf~-~~~~~   97 (220)
T cd00352          21 LRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALG--HVRLATNGLPSEANAQPFR-SEDGR   97 (220)
T ss_pred             HHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEE--EeEeeecCCCCCCCCCCcC-cCCCC
Confidence            579999999999999987543                           45556  9998853        9983 33368


Q ss_pred             EEEEEEEEEcChHHHHHHhC----CCCCCCHHHHHHHHHHHhhcCCC--chHHHHhccccceeEEEEEeCCCCEEEEEEc
Q 029533           75 IFCLFQGHIENVALLKQQYG----LNKTANEVIIVIEAYRTLRDRGP--YPADQVVRDIQGKFAFILYDSSSKNAFLASD  148 (192)
Q Consensus        75 ~~lv~nG~I~N~~eL~~~l~----~~~~~~D~e~l~~ly~~~~~~~~--~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD  148 (192)
                      ++++|||+|+|+.+|++++.    .+.+.+|+|+++++|.+..+.+.  ..+.++++.++|.|+|+++|..+++++++||
T Consensus        98 ~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d~~~~~l~~~rd  177 (220)
T cd00352          98 IALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLDGPFAFALWDGKPDRLFAARD  177 (220)
T ss_pred             EEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHHHHHHHHHHhCCccEEEEEEECCCCEEEEEEC
Confidence            99999999999999999875    26788999999999987321110  1245899999999999999988899999999


Q ss_pred             CCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          149 ADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       149 ~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      ++|.+||||+.+.++.++||||..++...+.+.+.++|||+++
T Consensus       178 ~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~~  220 (220)
T cd00352         178 RFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL  220 (220)
T ss_pred             CCCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCCC
Confidence            9999999999962578999999999988775569999999974

The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format

>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A

Probab=99.96  E-value=4.4e-29  Score=187.23  Aligned_cols=115  Identities=20%  Similarity=0.427  Sum_probs=73.2

Q ss_pred             ccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhCC----CCCCCHHHHHHHHHHHhhcCCCchHHHHhccc
Q 029533           58 LNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGPYPADQVVRDI  127 (192)
Q Consensus        58 ~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~~----~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L  127 (192)
                      |+|+++.      ||+..+.++++++++||+|||+++|+++|..    +.+.+|+|+++++|++..+   |+. +++++|
T Consensus         1 h~rl~~~~~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~---~~~-~~~~~l   76 (125)
T PF13537_consen    1 HVRLSTDDSDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYRE---WGE-DFLKRL   76 (125)
T ss_dssp             ------------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH------HGG-GGGGT-
T ss_pred             CcccccccccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHH---HHH-HHHHhC
Confidence            5566643      9983356788999999999999999999952    6788999999999985211   554 899999


Q ss_pred             cceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhh
Q 029533          128 QGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKK  176 (192)
Q Consensus       128 ~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~  176 (192)
                      +|.|||++||+.+++++++||++|+|||||+..+++.++||||+++|++
T Consensus        77 ~G~fa~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a  125 (125)
T PF13537_consen   77 DGPFAFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA  125 (125)
T ss_dssp             -EEEEEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred             CceEEEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence            9999999999988999999999999999999964368999999999864

>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=99.95  E-value=1.1e-26  Score=215.54  Aligned_cols=161  Identities=13%  Similarity=0.170  Sum_probs=130.9

Q ss_pred             hhhHHHHHHHHhHhcCCCCcCeeec-C-C------------------------------eEEeecccccccC--------
Q 029533           25 CALKNGLLANHFSSVHPGSVTVNLG-S-S------------------------------GVIAYSLNRQNPL--------   64 (192)
Q Consensus        25 ~~~~~~~m~~~l~~RGpd~~~~~~~-~-~------------------------------~~l~~~~~r~~~~--------   64 (192)
                      ....+..++.+|+|||+|+.|+... + +                              +.++++|+||+++        
T Consensus        36 ~~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~~~~~~~~~igH~R~at~g~~~~~n~  115 (640)
T PTZ00295         36 ASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLDSHKNSTIGIAHTRWATHGGKTDENA  115 (640)
T ss_pred             hHHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhcCCCCCcEEEEEeccccCCCCCcCCC
Confidence            4456789999999999999997651 1 0                              1234559999854        


Q ss_pred             CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCC-C--chHHHHhccccceeEEEEEe
Q 029533           65 LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRG-P--YPADQVVRDIQGKFAFILYD  137 (192)
Q Consensus        65 qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~-~--~g~~~~~~~L~G~fa~vi~d  137 (192)
                      ||+ ...+++++++|||+|+|+.+||++|.   . +.+.+|+|++++++.+..+.+ .  .++++++++|+|+|||++||
T Consensus       116 qP~-~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~~  194 (640)
T PTZ00295        116 HPH-CDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQEAVKSAISRLQGTWGLCIIH  194 (640)
T ss_pred             CCC-CCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhceEEEEE
Confidence            998 34457899999999999999999883   3 789999999999987532222 1  24567999999999999999


Q ss_pred             CC-CCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          138 SS-SKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       138 ~~-~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      +. .++++++||+   |||||+.. ++.++||||.++|...+.+ +..++||++.
T Consensus       195 ~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~-~~~l~pGei~  244 (640)
T PTZ00295        195 KDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNE-YISLKDGEIA  244 (640)
T ss_pred             eCCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcE-EEEeCCCeEE
Confidence            76 4899999997   99999985 5679999999999988865 6679999985

>PF13522 GATase_6: Glutamine amidotransferase domain

Probab=99.93  E-value=1.5e-25  Score=169.93  Aligned_cols=119  Identities=22%  Similarity=0.401  Sum_probs=104.2

Q ss_pred             CCCcCe--eecCCeEEeecccccccC--------CCceeeeCCcEEEEEEEEEcChHHHHHHhCC----CCCCCHHHHHH
Q 029533           41 PGSVTV--NLGSSGVIAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVI  106 (192)
Q Consensus        41 pd~~~~--~~~~~~~l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~~----~~~~~D~e~l~  106 (192)
                      ||..++  +..+.++|+  |+|+++.        ||+ .+.+++++++|||+|+|+.+|++++..    +.+.+|+|+++
T Consensus         1 pd~~~~~~~~~~~~~lg--H~R~AT~G~~~~~~~hPf-~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~   77 (133)
T PF13522_consen    1 PDFEGLASWLDGEAALG--HTRYATVGSPTEENNHPF-SNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIA   77 (133)
T ss_pred             CChHHHHHhcCCCEEEE--EeecCCCCCCCCcCCCCC-cCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHH
Confidence            556565  566678888  9999854        998 667789999999999999999998852    78899999999


Q ss_pred             HHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEec
Q 029533          107 EAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDD  170 (192)
Q Consensus       107 ~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe  170 (192)
                      +++++      +| +++++.|+|.|++++++...++++++||+.|.|||||+.. ++.++||||
T Consensus        78 ~li~~------~g-~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE  133 (133)
T PF13522_consen   78 ALIHR------WG-EEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRD-GDGYVFASE  133 (133)
T ss_pred             HHHHH------HH-HHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence            99976      67 5899999999999999988899999999999999999996 688999998

>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]

Probab=99.93  E-value=3.3e-25  Score=193.80  Aligned_cols=164  Identities=12%  Similarity=0.132  Sum_probs=134.4

Q ss_pred             hhHHHHHHHHhHhcCCCCcCeeecCCe--------------------------EEeecccccccC--------CCceeee
Q 029533           26 ALKNGLLANHFSSVHPGSVTVNLGSSG--------------------------VIAYSLNRQNPL--------LPRLFAV   71 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~~~~~~--------------------------~l~~~~~r~~~~--------qP~~~~~   71 (192)
                      .+.+..++.+|+|||.++.++...++.                          ..+++|.|.++.        ||+..+.
T Consensus        19 ~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~~~IGHvRYsTaG~s~~~naQP~~~~~   98 (470)
T COG0034          19 AQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGNVGIGHVRYSTAGSSSIENAQPFYVNS   98 (470)
T ss_pred             HHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCcceeeEeeecCCCCcccccccceEEec
Confidence            346788999999999999987543220                          224459998753        9985443


Q ss_pred             -CCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhc-CCC-chHHHHhccccceeEEEEEeCCCCEEE
Q 029533           72 -VDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRD-RGP-YPADQVVRDIQGKFAFILYDSSSKNAF  144 (192)
Q Consensus        72 -~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~-~~~-~g~~~~~~~L~G~fa~vi~d~~~~~l~  144 (192)
                       .+.++++|||.|.|..+||++|.   . |.+.+|+|++++++.+-.. .+. .+++++++.++|.||++++..  ++|+
T Consensus        99 ~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~~~~~a~~~~~~~v~G~ys~v~~~~--~~li  176 (470)
T COG0034          99 PGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAVKEVLRRVKGAYALVALIK--DGLI  176 (470)
T ss_pred             CCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccccHHHHHHHHHhhcCCcEEEEEEEC--CeEE
Confidence             45799999999999999999984   2 8899999999999986321 111 356778899999999999985  5999


Q ss_pred             EEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          145 LASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       145 ~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      ++|||.|+|||.+|...||.++||||.+||..++.+.+++++||++.
T Consensus       177 a~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v  223 (470)
T COG0034         177 AVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAV  223 (470)
T ss_pred             EEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEE
Confidence            99999999999999965666999999999999999999999999985

>PLN02981 glucosamine:fructose-6-phosphate aminotransferase

Probab=99.91  E-value=6e-24  Score=198.27  Aligned_cols=163  Identities=13%  Similarity=0.157  Sum_probs=129.8

Q ss_pred             hhhHHHHHHHHhHhcCCCCcCeeecC-C---------------------------------------eEEeecccccccC
Q 029533           25 CALKNGLLANHFSSVHPGSVTVNLGS-S---------------------------------------GVIAYSLNRQNPL   64 (192)
Q Consensus        25 ~~~~~~~m~~~l~~RGpd~~~~~~~~-~---------------------------------------~~l~~~~~r~~~~   64 (192)
                      ....+...+.+|+|||.|+.|+.+.. +                                       +.++++|+||+++
T Consensus        19 ~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~~~~~l~~~~~~~g~~~IGH~R~at~   98 (680)
T PLN02981         19 ILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEVAETDLNLDLVFENHAGIAHTRWATH   98 (680)
T ss_pred             HHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhccccccccccCCCCcEEEEEcccccC
Confidence            44678899999999999999987521 1                                       1245559999864


Q ss_pred             --------CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcC-----C--C--chHHHH
Q 029533           65 --------LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDR-----G--P--YPADQV  123 (192)
Q Consensus        65 --------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~-----~--~--~g~~~~  123 (192)
                              ||+....++.++++|||+|+|+.+||++|.   . |.+.+|+|++++++++..+.     +  .  .++.++
T Consensus        99 g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~~~~~~~~~~~~~~a~~~~  178 (680)
T PLN02981         99 GPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEEEGDVTFSQVVMEV  178 (680)
T ss_pred             CCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHHhcccccCCCCHHHHHHHH
Confidence                    998433347899999999999999999983   3 89999999999986542211     1  1  245579


Q ss_pred             hccccceeEEEEEeCCC-CEEEEEEcCCCCCcEEEEEec--C---------------------CeEEEEecchhhhhccC
Q 029533          124 VRDIQGKFAFILYDSSS-KNAFLASDADGSVPFFWGTDS--E---------------------GHLVLSDDVEIVKKGCG  179 (192)
Q Consensus       124 ~~~L~G~fa~vi~d~~~-~~l~~aRD~~G~rPL~~~~~~--~---------------------~~~~faSe~~al~~~~~  179 (192)
                      +++|+|+|||+++++.. ++++++||+   +||++|..+  +                     +.+++|||.+||...+ 
T Consensus       179 ~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSe~~al~~~~-  254 (680)
T PLN02981        179 MRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDKPKEFFLASDASAVVEHT-  254 (680)
T ss_pred             HHhccCccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccccccccccccccCCcEEEEeCHHHHHHhc-
Confidence            99999999999999764 899999996   999999852  1                     3699999999999985 


Q ss_pred             ceeEEeCCCeee
Q 029533          180 KSFAPFPKGIYE  191 (192)
Q Consensus       180 ~~~~~~ppG~~~  191 (192)
                      +.+++++||++.
T Consensus       255 ~~~~~l~~gei~  266 (680)
T PLN02981        255 KRVLVIEDNEVV  266 (680)
T ss_pred             CEEEEECCCeEE
Confidence            579999999986

>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=99.91  E-value=3.4e-23  Score=192.81  Aligned_cols=162  Identities=14%  Similarity=0.087  Sum_probs=130.3

Q ss_pred             hhhHHHHHHHHhHhcCCCCcCeeec-----------------C----------------------------------CeE
Q 029533           25 CALKNGLLANHFSSVHPGSVTVNLG-----------------S----------------------------------SGV   53 (192)
Q Consensus        25 ~~~~~~~m~~~l~~RGpd~~~~~~~-----------------~----------------------------------~~~   53 (192)
                      -...+...+.+|+|||.|+.|+...                 +                                  .+.
T Consensus        19 ~~~~~~~gL~~Le~RG~dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~~l~~~~~~~~~~~~~~~~~~~~~g~   98 (670)
T PTZ00394         19 ILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNISQLREKVFSEAVAATLPPMDATTSHH   98 (670)
T ss_pred             HHHHHHHHHHHHhccCcccceEEEecCcccccccccccccCCCcEEEEECCccHHHHHHHHhcchhhhhccccccCCCCC
Confidence            4457889999999999999886553                 1                                  012


Q ss_pred             EeecccccccC--------CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcC-C--C-
Q 029533           54 IAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDR-G--P-  117 (192)
Q Consensus        54 l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~-~--~-  117 (192)
                      ++++|+||+++        ||+ .+.+++++++|||+|||+.+||++|.   . |.+.+|+|++++++++..+. +  . 
T Consensus        99 ~~igH~R~at~g~~~~~n~qP~-~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi~~li~~~~~~~g~~~~  177 (670)
T PTZ00394         99 VGIAHTRWATHGGVCERNCHPQ-QSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGIHNF  177 (670)
T ss_pred             EEEEEeeceecCCCCcCCCCCc-CCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHHHHHHHHHHHhcCCCCH
Confidence            45669999864        998 45578899999999999999999983   3 89999999999887653321 2  1 


Q ss_pred             -chHHHHhccccceeEEEEEeCC-CCEEEEEEcCCCCCcEEEEEecC--------------------CeEEEEecchhhh
Q 029533          118 -YPADQVVRDIQGKFAFILYDSS-SKNAFLASDADGSVPFFWGTDSE--------------------GHLVLSDDVEIVK  175 (192)
Q Consensus       118 -~g~~~~~~~L~G~fa~vi~d~~-~~~l~~aRD~~G~rPL~~~~~~~--------------------~~~~faSe~~al~  175 (192)
                       .++.+++++|+|+|||++.+.. .++|+++||+   +||++|..++                    +.++|||+..+|.
T Consensus       178 ~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSd~~a~~  254 (670)
T PTZ00394        178 ADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTDLSGPLEVFFSSDVNSFA  254 (670)
T ss_pred             HHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccccCCCCcEEEEeChHHHH
Confidence             2456899999999999999643 4899999998   9999998531                    4799999999999


Q ss_pred             hccCceeEEeCCCeee
Q 029533          176 KGCGKSFAPFPKGIYE  191 (192)
Q Consensus       176 ~~~~~~~~~~ppG~~~  191 (192)
                      ..+. .+..+++|++.
T Consensus       255 ~~t~-~~~~l~dg~~~  269 (670)
T PTZ00394        255 EYTR-EVVFLEDGDIA  269 (670)
T ss_pred             Hhhc-eEEEecCCeEE
Confidence            9985 58999999986

>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]

Probab=99.90  E-value=4.9e-23  Score=176.21  Aligned_cols=160  Identities=13%  Similarity=0.165  Sum_probs=129.2

Q ss_pred             HHHHHHhHhcCCCCcCeeecC--------------------------CeEEeecccccccC--------CCceeeeC-Cc
Q 029533           30 GLLANHFSSVHPGSVTVNLGS--------------------------SGVIAYSLNRQNPL--------LPRLFAVV-DD   74 (192)
Q Consensus        30 ~~m~~~l~~RGpd~~~~~~~~--------------------------~~~l~~~~~r~~~~--------qP~~~~~~-~~   74 (192)
                      ....-+|+|||.|+-++-..+                          .+.++++|+|+++.        ||++.+.. +.
T Consensus        20 ~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~~gIGH~RYsTaG~s~~~n~QPFvv~t~~G~   99 (474)
T KOG0572|consen   20 ALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGSIGIGHTRYSTAGSSALSNVQPFVVNTPHGS   99 (474)
T ss_pred             HhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccceeeeeeecccccccccccccceEeeccCce
Confidence            334478999999998865421                          24466779998853        99966543 56


Q ss_pred             EEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHh----h--cCCCc--hHHHHhccccceeEEEEEeCCCCE
Q 029533           75 IFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTL----R--DRGPY--PADQVVRDIQGKFAFILYDSSSKN  142 (192)
Q Consensus        75 ~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~----~--~~~~~--g~~~~~~~L~G~fa~vi~d~~~~~  142 (192)
                      ++++|||++-|+++||+++.   . +.|.+|+|+|++++...    .  +..+|  .++.+.+.++|.||++++-.  ++
T Consensus       100 lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~~~~~~~~g~Yslv~m~~--d~  177 (474)
T KOG0572|consen  100 LAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIRDVMELLPGAYSLVFMTA--DK  177 (474)
T ss_pred             EEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhcccCccHHHHHHHHHHhcCCceeEEEEEc--cE
Confidence            99999999999999999984   2 78999999999998642    1  11223  46789999999999999974  67


Q ss_pred             EEEEEcCCCCCcEEEEEecCC----eEEEEecchhhhhccCceeEEeCCCeee
Q 029533          143 AFLASDADGSVPFFWGTDSEG----HLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       143 l~~aRD~~G~rPL~~~~~~~~----~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      ||+.|||+|.|||++|+..+.    .+++|||.+++..+..+..+++.||++.
T Consensus       178 l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV  230 (474)
T KOG0572|consen  178 LYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIV  230 (474)
T ss_pred             EEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCceEE
Confidence            999999999999999984332    7999999999999988889999999975

>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]

Probab=99.87  E-value=1.1e-21  Score=178.05  Aligned_cols=158  Identities=17%  Similarity=0.190  Sum_probs=132.1

Q ss_pred             hhHHHHHHHHhHhcCCCCcCeeecC-------------------------CeEEeecccccccC--------CCceeeeC
Q 029533           26 ALKNGLLANHFSSVHPGSVTVNLGS-------------------------SGVIAYSLNRQNPL--------LPRLFAVV   72 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~~~~-------------------------~~~l~~~~~r~~~~--------qP~~~~~~   72 (192)
                      ...+.+.+++|..||-|+.|+...+                         .+.+|++|+||+++        ||+ .+  
T Consensus        15 ~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~gIgHTRWATHG~P~~~NAHPh-~~--   91 (597)
T COG0449          15 IDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGVGIAHTRWATHGGPTRANAHPH-SD--   91 (597)
T ss_pred             HHHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccCCceeeeeccccCCCCCCcCCCCCC-CC--
Confidence            4578899999999999999976431                         13455669999976        887 33  


Q ss_pred             CcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC-chHHHHhccccceeEEEEEeCCC-CEEEEE
Q 029533           73 DDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSS-KNAFLA  146 (192)
Q Consensus        73 ~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~-~g~~~~~~~L~G~fa~vi~d~~~-~~l~~a  146 (192)
                      ++++|||||.|.|+.+||++|.   . |.+++|+|++.|++++..+++. .+++.++++|+|+||+++.|.+. ++|++|
T Consensus        92 ~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~~~~a~~~~l~~l~Gsyal~~~~~~~p~~i~~a  171 (597)
T COG0449          92 GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLEAVKKVLKRLEGSYALLCTHSDFPDELVAA  171 (597)
T ss_pred             CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHhcceeEEEEEecCCCCeEEEE
Confidence            8999999999999999999995   4 9999999999999987544321 35667899999999999999986 799999


Q ss_pred             EcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          147 SDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       147 RD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      |..   .||+.|.. ++..++||+..+++..+. .+..+..|++-
T Consensus       172 r~~---sPL~iG~g-~~e~f~aSD~~a~l~~t~-~~~~l~dgd~~  211 (597)
T COG0449         172 RKG---SPLVIGVG-EGENFLASDVSALLNFTR-RFVYLEEGDIA  211 (597)
T ss_pred             cCC---CCeEEEec-CCcceEecChhhhhhhhc-eEEEeCCCCEE
Confidence            995   99999994 678899999999999885 48888888763

>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type

Probab=99.74  E-value=4e-17  Score=143.62  Aligned_cols=130  Identities=15%  Similarity=0.173  Sum_probs=99.3

Q ss_pred             eEEeecccccccC--------CCceeeeCCcEEEEEEEEEcChHHHHHHhC--------------------C-CCCCCHH
Q 029533           52 GVIAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVALLKQQYG--------------------L-NKTANEV  102 (192)
Q Consensus        52 ~~l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~--------------------~-~~~~~D~  102 (192)
                      ..++..|+|.++.        ||+       .+++|||||.|+..+++.+.                    + ..+.||+
T Consensus       201 s~~al~H~RfSTNT~p~W~~AqPf-------r~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS  273 (413)
T cd00713         201 SAFALVHSRFSTNTFPSWPLAQPF-------RYLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDS  273 (413)
T ss_pred             EEEEEEEEecCCCCCCCcccCCcc-------eeEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChH
Confidence            3355559999854        886       25999999999998877652                    1 3468999


Q ss_pred             HHHHHHHHHhhcCC-C--chHH-------------------------HHhccccceeEEEEEeCCCCEEEEEEcCCCCCc
Q 029533          103 IIVIEAYRTLRDRG-P--YPAD-------------------------QVVRDIQGKFAFILYDSSSKNAFLASDADGSVP  154 (192)
Q Consensus       103 e~l~~ly~~~~~~~-~--~g~~-------------------------~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rP  154 (192)
                      +.+.++++.+...+ +  ..+.                         .+++.++|+||+++.|.  +.++++|||.|.||
T Consensus       274 ~~ld~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrnGlRP  351 (413)
T cd00713         274 ASLDNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRNGLRP  351 (413)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCCCCcc
Confidence            99999887543222 1  1111                         45688999999999884  78999999999999


Q ss_pred             EEEEEecCCeEEEEecchhhhhccCceeE---EeCCCeee
Q 029533          155 FFWGTDSEGHLVLSDDVEIVKKGCGKSFA---PFPKGIYE  191 (192)
Q Consensus       155 L~~~~~~~~~~~faSe~~al~~~~~~~~~---~~ppG~~~  191 (192)
                      |+|+.++++.+++|||..++.. ..+.+.   ++.||+++
T Consensus       352 l~~~~t~d~~~v~ASE~gal~~-~~~~V~~kg~l~PGe~v  390 (413)
T cd00713         352 ARYVITKDGLLIMSSEVGVVDV-PPEKVVEKGRLGPGEML  390 (413)
T ss_pred             eEEEEECCCEEEEEeCCcccCC-CcceeeecCCCCCCeEE
Confidence            9999876667999999999955 444565   89999986

GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.

>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type

Probab=99.66  E-value=1.2e-15  Score=127.42  Aligned_cols=130  Identities=15%  Similarity=0.255  Sum_probs=102.0

Q ss_pred             CeEEeecccccccC--------CCceeeeCCcEEEEEEEEEcChHHHHHHhC-----CCCCCCHHHHHHHHHHHhh-cCC
Q 029533           51 SGVIAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVALLKQQYG-----LNKTANEVIIVIEAYRTLR-DRG  116 (192)
Q Consensus        51 ~~~l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~-----~~~~~~D~e~l~~ly~~~~-~~~  116 (192)
                      .++|+  |.|+++.        ||+..   ++++++|||.|.|++++++.+.     .+.+.+|+|++++++.+.. +.+
T Consensus        81 ~~~l~--H~R~At~G~~~~~n~hPf~~---~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~  155 (257)
T cd01908          81 PLVLA--HVRAATVGPVSLENCHPFTR---GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERD  155 (257)
T ss_pred             cEEEE--EEecCCCCCCccccCCCccc---CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcC
Confidence            34555  9998853        89732   4899999999999999998874     2688999999999886532 211


Q ss_pred             C-------chHHHHhcccc-----ceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEec-----------------CCeEEE
Q 029533          117 P-------YPADQVVRDIQ-----GKFAFILYDSSSKNAFLASDADGSVPFFWGTDS-----------------EGHLVL  167 (192)
Q Consensus       117 ~-------~g~~~~~~~L~-----G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~-----------------~~~~~f  167 (192)
                      +       .++.+.++.|+     |.|++++.|.  ++|+++||+. .+||||+...                 ++.++|
T Consensus       156 ~~~~~~~~~al~~~~~~l~~~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vv  232 (257)
T cd01908         156 PLDPAELLDAILQTLRELAALAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVV  232 (257)
T ss_pred             CcchHHHHHHHHHHHHHHHHhCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEE
Confidence            1       35667888898     7889888874  7899999998 8999999853                 368999


Q ss_pred             EecchhhhhccCceeEEeCCCeeeC
Q 029533          168 SDDVEIVKKGCGKSFAPFPKGIYEI  192 (192)
Q Consensus       168 aSe~~al~~~~~~~~~~~ppG~~~~  192 (192)
                      |||..+...    .++++|||++++
T Consensus       233 aSE~l~~~~----~w~~v~~ge~~~  253 (257)
T cd01908         233 ASEPLTDDE----GWTEVPPGELVV  253 (257)
T ss_pred             EeCCCCCCC----CceEeCCCEEEE
Confidence            999887643    489999999863

YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.

>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]

Probab=99.60  E-value=7.9e-15  Score=128.30  Aligned_cols=151  Identities=21%  Similarity=0.226  Sum_probs=106.1

Q ss_pred             chhhhHHHHHHHHhHhcCCCCcCe-eecC--CeEEe---eccccc-ccCCCceeeeCCcEEEEEEEEEcChHHHHHHhCC
Q 029533           23 SACALKNGLLANHFSSVHPGSVTV-NLGS--SGVIA---YSLNRQ-NPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGL   95 (192)
Q Consensus        23 ~~~~~~~~~m~~~l~~RGpd~~~~-~~~~--~~~l~---~~~~r~-~~~qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~~   95 (192)
                      ..+.....+|...+..||||..+- ....  +..+.   +.|.|- .+.||+  .+++++++.|||+|||..-       
T Consensus        14 l~~~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG~~t~Qpv--v~d~~~vfl~NGeIyn~~~-------   84 (520)
T KOG0573|consen   14 LNSELISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRGYLTKQPV--VEDDRYVFLFNGEIYNGEK-------   84 (520)
T ss_pred             ccccchhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEeeeeccCce--ecccceEEEecceeccCCC-------
Confidence            445556788999999999998763 3322  11111   112233 344997  4556689999999999652       


Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhh
Q 029533           96 NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVK  175 (192)
Q Consensus        96 ~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~  175 (192)
                      ..+..|+.++++....+.+.  .++.+.++.++|+|||++||...++||++||++|+|+|.|+.+..+...++|..-   
T Consensus        85 s~~~~d~~~l~~~l~~~~e~--~~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~~~f~~~~st~g---  159 (520)
T KOG0573|consen   85 SDTLFDTDILAEELSNLKES--GDILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDPFNFSLVLSTVG---  159 (520)
T ss_pred             ccccchHHHHHHHHhcCCcc--ccHHHHHHhccCCceEEEEEccCcEEEEecccccceeeeEEeccCceeEEeeccc---
Confidence            34567999998888765433  3577899999999999999999999999999999999999997545434333321   


Q ss_pred             hccCceeEEeCCC
Q 029533          176 KGCGKSFAPFPKG  188 (192)
Q Consensus       176 ~~~~~~~~~~ppG  188 (192)
                       ...+.+.|+||+
T Consensus       160 -~~~~~i~e~~~~  171 (520)
T KOG0573|consen  160 -TSGKLIYEVPPV  171 (520)
T ss_pred             -cCCccccccCch
Confidence             122335688887

>TIGR03442 conserved hypothetical protein TIGR03442

Probab=99.60  E-value=1.6e-14  Score=120.42  Aligned_cols=121  Identities=12%  Similarity=0.164  Sum_probs=92.6

Q ss_pred             ccccccC---------CCceeeeCCcEEEEEEEEEcChH-----HHHHHhC-----CCCCCCHHHHHHHHHHHhh-cCCC
Q 029533           58 LNRQNPL---------LPRLFAVVDDIFCLFQGHIENVA-----LLKQQYG-----LNKTANEVIIVIEAYRTLR-DRGP  117 (192)
Q Consensus        58 ~~r~~~~---------qP~~~~~~~~~~lv~nG~I~N~~-----eL~~~l~-----~~~~~~D~e~l~~ly~~~~-~~~~  117 (192)
                      |.|+++.         ||+.   .++++++|||.|.|++     +|++++.     .+.+.+|+|++.+++.+.. +..+
T Consensus        88 HvR~AT~G~~~~~~N~hPf~---~g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li~~~~~~~~~  164 (251)
T TIGR03442        88 AVRSATVGMAIDESACAPFS---DGRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNRLLENDP  164 (251)
T ss_pred             EeeeCCCCCCcchhcCCCCC---cCCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHHHHHHhhcCC
Confidence            8887632         9973   3789999999999997     4555553     2678999999988886532 2111


Q ss_pred             ----chHHHHhccccce-------eEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCc-eeEEe
Q 029533          118 ----YPADQVVRDIQGK-------FAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGK-SFAPF  185 (192)
Q Consensus       118 ----~g~~~~~~~L~G~-------fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~-~~~~~  185 (192)
                          ..+.++++.|.|.       |++++.|  .++|++.||+.   ||||+.. ++.++||||.     +..+ .++++
T Consensus       165 ~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sd--g~~l~a~R~~~---~L~~~~~-~~~~vvASEp-----l~~~~~W~~v  233 (251)
T TIGR03442       165 RALEEALAEVLLILFSAAAAPRVRLNLLLTD--GSRLVATRWAD---TLYWLKD-PEGVIVASEP-----YDDDPGWQDV  233 (251)
T ss_pred             chHHHHHHHHHHHHHHHhhCcccceEEEEEc--CCEEEEEEeCC---eEEEEEc-CCEEEEEeCC-----cCCCCCceEe
Confidence                2455677888888       9999998  48999999985   9999985 4679999998     3333 79999


Q ss_pred             CCCeeeC
Q 029533          186 PKGIYEI  192 (192)
Q Consensus       186 ppG~~~~  192 (192)
                      |||++++
T Consensus       234 ~pge~v~  240 (251)
T TIGR03442       234 PDRHLLS  240 (251)
T ss_pred             CCCeEEE
Confidence            9999863

Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).

>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group

Probab=99.53  E-value=1.2e-13  Score=120.46  Aligned_cols=110  Identities=18%  Similarity=0.218  Sum_probs=77.7

Q ss_pred             CeEEeecccccccC--------CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C-CCC----------------CCHH
Q 029533           51 SGVIAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L-NKT----------------ANEV  102 (192)
Q Consensus        51 ~~~l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~----------------~~D~  102 (192)
                      ..+++  |+|+++.        ||+       .+++|||+|.|...+++.+.   . ..+                .||+
T Consensus       196 ~~~i~--H~RysTnt~p~w~~AqPf-------~~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS  266 (361)
T PF00310_consen  196 HFAIG--HQRYSTNTFPSWENAQPF-------RALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDS  266 (361)
T ss_dssp             SEEEE--EEEE-SSSSCSGGGSSSE-------EEEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HH
T ss_pred             eEEEE--EEecCCCCCCcchhcChH-------HHhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChH
Confidence            45555  9999854        887       18999999999999988763   1 333                8999


Q ss_pred             HHHHHHHHHhhcCC----------------------C------chHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCc
Q 029533          103 IIVIEAYRTLRDRG----------------------P------YPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVP  154 (192)
Q Consensus       103 e~l~~ly~~~~~~~----------------------~------~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rP  154 (192)
                      +.+.++++.+...+                      +      .-...+++.++|.|++++.|.  +.++++|||.|.||
T Consensus       267 ~~l~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g--~~~~a~~Dr~GLRP  344 (361)
T PF00310_consen  267 EVLDNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDG--NGVGAFLDRNGLRP  344 (361)
T ss_dssp             HHHHHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECS--SEEEEEE-TT--S-
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeC--CEEEEEECCCCCcc
Confidence            99988887543333                      0      013456788999999999874  67999999999999


Q ss_pred             EEEEEecCCeEEEEecc
Q 029533          155 FFWGTDSEGHLVLSDDV  171 (192)
Q Consensus       155 L~~~~~~~~~~~faSe~  171 (192)
                      +.|+.++|+.+++|||.
T Consensus       345 ~~~~~~~d~~~v~aSE~  361 (361)
T PF00310_consen  345 LRYGITEDGLVVLASEA  361 (361)
T ss_dssp             -EEEEETTCEEEEESST
T ss_pred             eEEEEECCCEEEEEeCC
Confidence            99999867889999984

This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....

>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]

Probab=99.47  E-value=1.3e-13  Score=122.52  Aligned_cols=134  Identities=13%  Similarity=0.186  Sum_probs=103.9

Q ss_pred             chhhhHHHHHHHHhHhcCCCCcCeeecC---------------------------------CeEEeecccccccC-----
Q 029533           23 SACALKNGLLANHFSSVHPGSVTVNLGS---------------------------------SGVIAYSLNRQNPL-----   64 (192)
Q Consensus        23 ~~~~~~~~~m~~~l~~RGpd~~~~~~~~---------------------------------~~~l~~~~~r~~~~-----   64 (192)
                      .+.-.++-.-+.+|..||-|+.|+..++                                 ..-++++|+||+++     
T Consensus        17 ~eIid~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l~~~f~sH~gIAHTRWATHGvPs~   96 (670)
T KOG1268|consen   17 GEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNLDEKFISHCGIAHTRWATHGVPSE   96 (670)
T ss_pred             HHHHHHHHHHHHHhhccCCCCCceeecCCcccchhhhcccCceeehhHHHhhcCcccceeeeeeeeeeeeehhhcCCCCc
Confidence            3444566778889999999998887542                                 02244559999965     


Q ss_pred             ---CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC--ch----HHHHhcccccee
Q 029533           65 ---LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP--YP----ADQVVRDIQGKF  131 (192)
Q Consensus        65 ---qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~--~g----~~~~~~~L~G~f  131 (192)
                         ||+..+..+.++++|||.|.||++|++.|.   + |.+++|+|+++.+++...+.-+  ..    ++.++++++|+|
T Consensus        97 ~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~~F~~lv~~v~k~lEGaF  176 (670)
T KOG1268|consen   97 VNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLDFHVLVELVLKELEGAF  176 (670)
T ss_pred             cCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHHHhhCCCcccHHHHHHHHHHHhhhHH
Confidence               887555668899999999999999999884   4 8899999999999987765422  11    456899999999


Q ss_pred             EEEEEeCC-CCEEEEEEcCCCCCcEEEEE
Q 029533          132 AFILYDSS-SKNAFLASDADGSVPFFWGT  159 (192)
Q Consensus       132 a~vi~d~~-~~~l~~aRD~~G~rPL~~~~  159 (192)
                      ++++-... .+++.+.|+.   .||..|.
T Consensus       177 alvfkS~hfP~e~Va~Rrg---SPlliGv  202 (670)
T KOG1268|consen  177 GLLFKSSHFPGEVVAARKG---SPLLIGV  202 (670)
T ss_pred             HHHHHhhcCCcceeeeccC---Ccceeee
Confidence            99987654 4899999994   7888775

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=99.29  E-value=3.7e-11  Score=118.20  Aligned_cols=131  Identities=15%  Similarity=0.180  Sum_probs=93.2

Q ss_pred             eEEeecccccccC--------CCceeeeCCcEEEEEEEEEcChH----HHHHH--h-------------CC-CCCCCHHH
Q 029533           52 GVIAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVA----LLKQQ--Y-------------GL-NKTANEVI  103 (192)
Q Consensus        52 ~~l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~----eL~~~--l-------------~~-~~~~~D~e  103 (192)
                      ..++..|+|.++.        ||+       -.++|||||.-..    .++.+  .             .+ ....||++
T Consensus       212 s~~al~HsRFSTNT~PsW~~AqPF-------R~laHNGEINTi~gN~nwm~are~~l~s~~~~~~~~~~Pii~~~~SDSa  284 (1485)
T PRK11750        212 SAICVFHQRFSTNTLPRWPLAQPF-------RYLAHNGEINTITGNRQWARARAYKFQTPLIPDLQEAAPFVNETGSDSS  284 (1485)
T ss_pred             EEEEEEECcCCCCCCCCCCcCCCc-------eeeeeccccccHHHHHHHHHHHHHhccCCCcchHHhhCCcCCCCCChHH
Confidence            3455569999864        775       2489999997333    22211  0             01 24568998


Q ss_pred             HHHHHHHHhhcCC-----------C--ch--------H-------HHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcE
Q 029533          104 IVIEAYRTLRDRG-----------P--YP--------A-------DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPF  155 (192)
Q Consensus       104 ~l~~ly~~~~~~~-----------~--~g--------~-------~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL  155 (192)
                      .+-.+++-+-..|           |  |.        .       ..+++-++|+||+++.|  .+.+++.|||.|.|||
T Consensus       285 ~lDn~lElL~~~G~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~--g~~i~A~~DrnGlRPl  362 (1485)
T PRK11750        285 SLDNMLELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTD--GRYAACNLDRNGLRPA  362 (1485)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEEe--CCEEEEecCCCCCccc
Confidence            8766665432221           0  21        1       12456689999999998  4899999999999999


Q ss_pred             EEEEecCCeEEEEecchhhhhccCceeE--EeCCCeee
Q 029533          156 FWGTDSEGHLVLSDDVEIVKKGCGKSFA--PFPKGIYE  191 (192)
Q Consensus       156 ~~~~~~~~~~~faSe~~al~~~~~~~~~--~~ppG~~~  191 (192)
                      .|+.++|+.+++|||..++.....+.++  ++.||+++
T Consensus       363 r~~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi  400 (1485)
T PRK11750        363 RYVITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELL  400 (1485)
T ss_pred             eEEEEcCCEEEEEecceeeecccceeEEecccCCCeEE
Confidence            9988767789999999998776666677  99999986

>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D

Probab=98.25  E-value=1.2e-05  Score=67.95  Aligned_cols=130  Identities=18%  Similarity=0.260  Sum_probs=64.0

Q ss_pred             ecccccccC--------CCceee-eCCcEEEEEEEEEcChHHHHH-HhCCCCCCCHHHHHHHHHHH-hhcCC---Cc---
Q 029533           56 YSLNRQNPL--------LPRLFA-VVDDIFCLFQGHIENVALLKQ-QYGLNKTANEVIIVIEAYRT-LRDRG---PY---  118 (192)
Q Consensus        56 ~~~~r~~~~--------qP~~~~-~~~~~~lv~nG~I~N~~eL~~-~l~~~~~~~D~e~l~~ly~~-~~~~~---~~---  118 (192)
                      ++|.|.+..        ||+... ..++.+.+|||.|.+++.++. .+. ..+.+|+|.+..++-. +.+.+   +.   
T Consensus        75 laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~~~-~~G~TDSE~~F~lll~~l~~~~~~~~~~~~  153 (271)
T PF13230_consen   75 LAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDRYQ-PVGTTDSEHAFCLLLDQLRDRGPDAPPALE  153 (271)
T ss_dssp             EEEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHHHT---S--HHHHHHHHHHHTTTTT-HH--HHHH
T ss_pred             EEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccccc-cCCCcHHHHHHHHHHHHHHHhCCcccccHH
Confidence            348887742        997432 135789999999999876652 222 5678999998877643 22221   10   


Q ss_pred             ----hHHHHhcccc--ceeEEEEEeCCCCEEEEEEcC----CCCCcEE-------------EE---EecCCeEEEEecch
Q 029533          119 ----PADQVVRDIQ--GKFAFILYDSSSKNAFLASDA----DGSVPFF-------------WG---TDSEGHLVLSDDVE  172 (192)
Q Consensus       119 ----g~~~~~~~L~--G~fa~vi~d~~~~~l~~aRD~----~G~rPL~-------------~~---~~~~~~~~faSe~~  172 (192)
                          .+.+..+++.  |.++|++.|.  +.|++.|+.    .-+++.+             ..   ...+..++||||.=
T Consensus       154 ~~~~~l~~~~~~~~~~~~~N~~lsDG--~~l~a~~~~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaSePL  231 (271)
T PF13230_consen  154 ELFEALRELAKEINEYGSLNFLLSDG--ERLFAHRYTSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVASEPL  231 (271)
T ss_dssp             HHHHHHHHHHHS-SSSEEEEEEEE-S--S-EEEEEEESSS----------------------EEEEETTTTEEEEESS--
T ss_pred             HHHHHHHHHHHHhccCeeEEEEEECC--ceEEEEEcCCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEeccC
Confidence                1233445544  6888999884  799999992    1122222             00   11245788999854


Q ss_pred             hhhhccCceeEEeCCCeeeC
Q 029533          173 IVKKGCGKSFAPFPKGIYEI  192 (192)
Q Consensus       173 al~~~~~~~~~~~ppG~~~~  192 (192)
                      .    ..+...++|+|++++
T Consensus       232 t----~~e~W~~vp~g~~l~  247 (271)
T PF13230_consen  232 T----DDEDWEPVPPGSLLV  247 (271)
T ss_dssp             ------SS--EE--SSEEEE
T ss_pred             C----CCCCeEEcCCCcEEE
Confidence            3    123589999999863

>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices

Probab=98.24  E-value=1.1e-05  Score=63.42  Aligned_cols=94  Identities=17%  Similarity=0.309  Sum_probs=65.2

Q ss_pred             eCCcEEEEEEEEEcChHHHHHHhCC----CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEE
Q 029533           71 VVDDIFCLFQGHIENVALLKQQYGL----NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLA  146 (192)
Q Consensus        71 ~~~~~~lv~nG~I~N~~eL~~~l~~----~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~a  146 (192)
                      .+.+...-.-|.|||+.-|+.-.+.    ....+|+|+++.++.++      |. .++.--+|+|+|.|=|+ +++|.+.
T Consensus        45 ~~~~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~l------G~-~aLsLAEGdfcffiE~k-ng~L~l~  116 (201)
T PF09147_consen   45 RFERGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTRL------GN-SALSLAEGDFCFFIEDK-NGELTLI  116 (201)
T ss_dssp             EETTEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHHH-------G-GGGGG--SSEEEEEEET-TSEEEEE
T ss_pred             EecCccEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHHHh------hh-hhhhhhcCceEEEEecC-CCcEEEE
Confidence            4456678889999999888766553    23469999999998874      43 68888999999999875 7899999


Q ss_pred             EcCCCCCcEEEEEecCCeEEEEecchhh
Q 029533          147 SDADGSVPFFWGTDSEGHLVLSDDVEIV  174 (192)
Q Consensus       147 RD~~G~rPL~~~~~~~~~~~faSe~~al  174 (192)
                      .|+-|..|.|.-.+  +..++...+|-+
T Consensus       117 Tds~G~~pv~lV~~--~~~WiTn~LK~V  142 (201)
T PF09147_consen  117 TDSRGFNPVYLVQS--KFIWITNSLKLV  142 (201)
T ss_dssp             E-SSSSS-EEEEES--SSEEEES-HHHH
T ss_pred             ecCCCCceEEEEec--CceEEecceEEE
Confidence            99999999998774  456777766644

Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.

>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]

Probab=98.00  E-value=3.9e-05  Score=67.14  Aligned_cols=120  Identities=11%  Similarity=0.036  Sum_probs=81.5

Q ss_pred             eEEeecccccccC--------CCceeeeCCcEEEEEEEEEcChHHHHHHhC----CCCCCCHHHHHHHHHHHhhcCC-C-
Q 029533           52 GVIAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVALLKQQYG----LNKTANEVIIVIEAYRTLRDRG-P-  117 (192)
Q Consensus        52 ~~l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~----~~~~~~D~e~l~~ly~~~~~~~-~-  117 (192)
                      +.++..|+|.++.        ||+       -.++|||||.++..-++.+.    .+++.+|+|.+..++.-..+.+ + 
T Consensus       202 s~~~l~HsRFSTNT~p~W~~AHPf-------r~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~l~p~~~~~~sDs  274 (371)
T COG0067         202 SAIALVHTRFSTNTFPSWPLAHPF-------RLLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKLLPILMRGGSDS  274 (371)
T ss_pred             eeEEEEEeccCCCCCCCCCccCcc-------eeeeecceecccccHHHHHHHhhcccccCccHHHHHHHHHHhcccCCcc
Confidence            3455559999864        775       24699999998877666553    2678888888887774321111 0 


Q ss_pred             ------------chH-HHHhccccceeEEEEEeCC-CCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccC
Q 029533          118 ------------YPA-DQVVRDIQGKFAFILYDSS-SKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCG  179 (192)
Q Consensus       118 ------------~g~-~~~~~~L~G~fa~vi~d~~-~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~  179 (192)
                                  .|. ..-...|.|+||++.-..- ++...+.+|+.+.+|.+-|.. +..+.++|+..|++..++
T Consensus       275 ~~~dn~lE~l~~~G~~l~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa-~~~f~dgse~gA~ldrng  349 (371)
T COG0067         275 ASLDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA-DIVFTDGSEEGAILDRNG  349 (371)
T ss_pred             hhhhHHHHHHHhcCcCchhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCc-ceeEEeeeeeeeeeccCC
Confidence                        011 1234568889998875422 356777899999999888874 567888899888877654

>COG0121 Predicted glutamine amidotransferase [General function prediction only]

Probab=95.00  E-value=0.21  Score=41.84  Aligned_cols=51  Identities=16%  Similarity=0.069  Sum_probs=30.9

Q ss_pred             eEEeecccccccC--------CCceeee-CCcEEEEEEEEEcChHHH-HHHhCCCCCCCHHHHH
Q 029533           52 GVIAYSLNRQNPL--------LPRLFAV-VDDIFCLFQGHIENVALL-KQQYGLNKTANEVIIV  105 (192)
Q Consensus        52 ~~l~~~~~r~~~~--------qP~~~~~-~~~~~lv~nG~I~N~~eL-~~~l~~~~~~~D~e~l  105 (192)
                      .+++  |.|.+..        ||++... .....++|||.|.+++.+ ...+. ....+|++..
T Consensus        72 ~via--HvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~~~~~~~-~~~~tds~~~  132 (252)
T COG0121          72 LVIA--HVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLLEGRKLE-PVGYTDSEAA  132 (252)
T ss_pred             EEEE--EEeccCCCcccccCCCCccccCCccceEEEecCcccCcccccccccC-CCCcchHHHH
Confidence            4444  8887742        8974332 345689999999999863 33332 2334555543

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=90.51  E-value=1.8  Score=43.74  Aligned_cols=50  Identities=16%  Similarity=0.224  Sum_probs=38.9

Q ss_pred             HhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhh
Q 029533          123 VVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIV  174 (192)
Q Consensus       123 ~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al  174 (192)
                      .++-.+|+--+.+-|.  +.+=+.=||.|.||-=|+.+.|+.+++|||.-.+
T Consensus       406 ~MEpWDGPALl~FsDG--ry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv  455 (2142)
T KOG0399|consen  406 QMEPWDGPALLTFSDG--RYCGAILDRNGLRPARYYITSDDRVICASEVGVV  455 (2142)
T ss_pred             cCCCCCCceEEEecCC--ceeeeeeccCCCcceeeEEecCCEEEEeeccccc
Confidence            4567888876666653  5666667999999998888888999999997654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	192
1ct9_A	553	Crystal Structure Of Asparagine Synthetase B From E		1e-07

>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From Escherichia Coli Length = 553

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 81  GHIENVALLKQQYGLN---KTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYD 137
           G I N   L+ +YG     +T ++  +++  Y+   ++GP    + + D+QG FAF LYD
Sbjct: 75  GEIYNHQALRAEYGDRYQFQTGSDCEVILALYQ---EKGP----EFLDDLQGMFAFALYD 127
Query: 138 SSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIY 190
           S      +  D  G +P + G D  G L ++ +++ +   C ++   FP G Y
Sbjct: 128 SEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC-RTIKEFPAGSY 179

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
1ct9_A	553	Asparagine synthetase B; amidotransferase, substra	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Length = 553

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 17/91 (18%)

Query: 101 EVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTD 160
           EVI+    Y+   ++GP    + + D+QG FAF LYDS      +  D  G +P + G D
Sbjct: 100 EVIL--ALYQ---EKGP----EFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYD 150

Query: 161 SEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE 191
             G L ++   E+      K+  P  + I E
Sbjct: 151 EHGQLYVA--SEM------KALVPVCRTIKE 173

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 8e-04
 Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 43/141 (30%)

Query: 1   MLAVFDKSVAKAPEALQSPQTESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNR 60
            L+VF  S    P  L S            L+           V   L       YSL  
Sbjct: 377 RLSVFPPSA-HIPTILLS------------LIWFDVIKSDVMVVVNKL-----HKYSLVE 418

Query: 61  QNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLR-----DR 115
           + P    +   +  I+   +  +EN      +Y L+++      +++ Y   +     D 
Sbjct: 419 KQPKESTIS--IPSIYLELKVKLEN------EYALHRS------IVDHYNIPKTFDSDDL 464

Query: 116 GPYPADQVVRDIQGKFAFILY 136
            P   DQ        ++ I +
Sbjct: 465 IPPYLDQYF------YSHIGH 479

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
1ct9_A	553	Asparagine synthetase B; amidotransferase, substra	100.0
1xff_A	240	D-fructose-6-, glucosamine--fructose-6-phosphate a	99.98
1ao0_A	459	Glutamine phosphoribosylpyrophosphate amidotransfe	99.98
1ecf_A	504	Glutamine phosphoribosylpyrophosphate amidotransf;	99.97
2bpl_A	608	Glucosamine--fructose-6-phosphate aminotransferase	99.96
1jgt_A	513	Beta-lactam synthetase; asparagine synthetase, cla	99.95
1q15_A	503	CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS,	99.92
3mdn_A	274	Glutamine aminotransferase class-II domain protei;	99.88
1te5_A	257	Conserved hypothetical protein; glutamine amidotra	99.7
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	99.67
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	99.63

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1

Probab=100.00  E-value=3.9e-35  Score=266.63  Aligned_cols=156  Identities=23%  Similarity=0.426  Sum_probs=139.8

Q ss_pred             hhhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhC---C
Q 029533           25 CALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYG---L   95 (192)
Q Consensus        25 ~~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~---~   95 (192)
                      ....+.+|++.|+|||||+.+++..++.+|+  |+|++++      ||+ .+.+++++++|||+|||+.+|+++|.   .
T Consensus        16 ~~~~~~~m~~~l~hRGpD~~G~~~~~~~~lg--h~Rlsi~~~~~~~QP~-~~~~~~~~lv~NGeIyN~~eLr~~L~~~~~   92 (553)
T 1ct9_A           16 LRKKALELSRLMRHRGPDWSGIYASDNAILA--HERLSIVDVNAGAQPL-YNQQKTHVLAVNGEIYNHQALRAEYGDRYQ   92 (553)
T ss_dssp             HHHHHHHHHHTTGGGCBTEEEEEECSSEEEE--EEECCCSCTTTCCSSE-ECTTSCEEEEEEEEETTHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHhccCCCcccEEEECCEEEE--EEeeeeeCCCCCCCCe-EeCCCCEEEEEEEEEECHHHHHHHHhccCc
Confidence            3557789999999999999999998888888  9999865      997 55678899999999999999999985   2


Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhh
Q 029533           96 NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVK  175 (192)
Q Consensus        96 ~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~  175 (192)
                      +.+.+|+|+|+++|++      ||. +++++|+|+|||++||..+++++++||++|+|||||+...++.++||||.++|.
T Consensus        93 f~s~sDtEvil~l~~~------~g~-~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~al~  165 (553)
T 1ct9_A           93 FQTGSDCEVILALYQE------KGP-EFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALV  165 (553)
T ss_dssp             CCSCCTTHHHHHHHHH------HTT-TTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTT
T ss_pred             cCCCCcHHHHHHHHHH------HHH-HHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeechHHHH
Confidence            7889999999999997      775 799999999999999998899999999999999999984357899999999998


Q ss_pred             hccCceeEEeCCCeee
Q 029533          176 KGCGKSFAPFPKGIYE  191 (192)
Q Consensus       176 ~~~~~~~~~~ppG~~~  191 (192)
                      ..+ +.+.++|||+++
T Consensus       166 ~~~-~~i~~l~pG~~~  180 (553)
T 1ct9_A          166 PVC-RTIKEFPAGSYL  180 (553)
T ss_dssp             TTC-SEEEECCTTEEE
T ss_pred             hhc-CCEEEECCCeEE
Confidence            876 469999999986

>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*

Probab=99.98  E-value=1.1e-31  Score=220.64  Aligned_cols=155  Identities=14%  Similarity=0.143  Sum_probs=129.4

Q ss_pred             hHHHHHHHHhHhcCCCCcCee-ec---------------------------CCeEEeecccccccC--------CCceee
Q 029533           27 LKNGLLANHFSSVHPGSVTVN-LG---------------------------SSGVIAYSLNRQNPL--------LPRLFA   70 (192)
Q Consensus        27 ~~~~~m~~~l~~RGpd~~~~~-~~---------------------------~~~~l~~~~~r~~~~--------qP~~~~   70 (192)
                      ..+..|++.|+|||||+.+++ ..                           +..+|+  |+|++++        ||+ .+
T Consensus        14 ~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~ig--H~R~at~g~~~~~n~qP~-~~   90 (240)
T 1xff_A           14 EILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIA--HTRWATHGEPSEVNAHPH-VS   90 (240)
T ss_dssp             HHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSEEEE--EEECCSSSCSSTTTSSCE-EE
T ss_pred             HHHHHHHHHHHhcCCCcCCEEEEecCCcEEEEEcCCcHHHHHhhhhcccCCccEEEE--EEeccCCCCCCcccCCCc-cc
Confidence            578899999999999999988 52                           345555  9999854        897 33


Q ss_pred             eCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC---chHHHHhccccceeEEEEEeCC-CCE
Q 029533           71 VVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP---YPADQVVRDIQGKFAFILYDSS-SKN  142 (192)
Q Consensus        71 ~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~---~g~~~~~~~L~G~fa~vi~d~~-~~~  142 (192)
                        ++++++|||+|||+.+|+++|.   . +.+.+|+|+++++|++..+.+.   .++++++++|+|+|||++||.. .++
T Consensus        91 --~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~g~~~~~ai~~~~~~l~G~fa~~i~d~~~~~~  168 (240)
T 1xff_A           91 --EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDT  168 (240)
T ss_dssp             --TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCEEEEEEEEETTCTTC
T ss_pred             --CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcccceEEEEEecCCCCE
Confidence              7899999999999999999883   3 7899999999999987432121   2345799999999999999985 689


Q ss_pred             EEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          143 AFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       143 l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      |+++||+   |||||+.. ++.++||||.++|...+. .+.++|||+++
T Consensus       169 l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~-~~~~l~pG~~~  212 (240)
T 1xff_A          169 LLAARSG---SPLVIGLG-MGENFIASDQLALLPVTR-RFIFLEEGDIA  212 (240)
T ss_dssp             EEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCS-EEEECCTTCEE
T ss_pred             EEEEECC---CceEEEEe-CCEEEEEECHHHHHhhCC-eEEEECCCEEE
Confidence            9999997   99999985 577999999999988875 48999999986

>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*

Probab=99.98  E-value=8.2e-32  Score=239.88  Aligned_cols=161  Identities=14%  Similarity=0.139  Sum_probs=132.2

Q ss_pred             hhHHHHHHHHhHhcCCCCcCeeec---------------------------CCeEEeecccccccC--------CCceee
Q 029533           26 ALKNGLLANHFSSVHPGSVTVNLG---------------------------SSGVIAYSLNRQNPL--------LPRLFA   70 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~~l~~~~~r~~~~--------qP~~~~   70 (192)
                      ...+..|+..|+|||||+.+++..                           +..++|  |+|++++        ||+...
T Consensus        13 ~~~~~~~l~~L~hRG~D~~Gi~~~~~~~~~~~k~~g~v~~~~~~~~l~~l~g~~~ig--H~R~at~g~~~~~n~qP~~~~   90 (459)
T 1ao0_A           13 PQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIG--HVRYATAGGGGYENVQPLLFR   90 (459)
T ss_dssp             HHHHHHHHHHTGGGCCSEEEEEEECSSCEEEEEEESCHHHHTTSSCTTTCCBSEEEE--EEECCC----CGGGSSSEEEB
T ss_pred             HHHHHHHHHHHHhcCCCcCCEEEEeCCeEEEEecCCcHhhhcchhhhhccCCCEEEE--EEecCCCCCCCccCCCCceec
Confidence            345678999999999999998763                           234455  9999853        998432


Q ss_pred             --eCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCCC-chHHHHhccccceeEEEEEeCCCCEE
Q 029533           71 --VVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRGP-YPADQVVRDIQGKFAFILYDSSSKNA  143 (192)
Q Consensus        71 --~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~~-~g~~~~~~~L~G~fa~vi~d~~~~~l  143 (192)
                        .+++++++|||+|+|+.+|+++|.   . +.+.+|+|+++++|.+..+... .++.+++++|+|+|||++||  .++|
T Consensus        91 ~~~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~~~~~a~~~~~~~l~G~fa~~i~d--~~~l  168 (459)
T 1ao0_A           91 SQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFLIMT--ETEM  168 (459)
T ss_dssp             CTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHTCCCSSHHHHHHHHHTTCCEEEEEEEEC--SSEE
T ss_pred             cCCCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhccceEEEEEe--CCEE
Confidence              457899999999999999999883   3 8899999999999986210000 13458999999999999999  4799


Q ss_pred             EEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          144 FLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       144 ~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      +++||++|+|||||+.. ++.++||||.++|.....+.++++|||+++
T Consensus       169 ~~~RD~~G~rPL~~~~~-~~~~~~ASE~~al~~~~~~~i~~l~pG~~~  215 (459)
T 1ao0_A          169 IVALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEML  215 (459)
T ss_dssp             EEEECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEEE
T ss_pred             EEEECCCCCCCeEEEec-CCEEEEEECchHHhcCCCceEEEECCCEEE
Confidence            99999999999999996 578999999999988766779999999986

>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*

Probab=99.97  E-value=3.6e-30  Score=231.70  Aligned_cols=164  Identities=12%  Similarity=0.070  Sum_probs=131.9

Q ss_pred             hHHHHHHHHhHhcCCCCcCeeecC-C-------------------------eEEeecccccccC--------CCceeeeC
Q 029533           27 LKNGLLANHFSSVHPGSVTVNLGS-S-------------------------GVIAYSLNRQNPL--------LPRLFAVV   72 (192)
Q Consensus        27 ~~~~~m~~~l~~RGpd~~~~~~~~-~-------------------------~~l~~~~~r~~~~--------qP~~~~~~   72 (192)
                      ..+..|+..|+|||||+.+++... +                         +.++++|+|++++        ||+..+..
T Consensus        14 ~~l~~~l~~LqhRG~D~aGi~~~~~~~~~~~~k~~g~v~~vf~~~~~~~l~g~~~igH~R~sT~G~~~~~n~QP~~~~~~   93 (504)
T 1ecf_A           14 QSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSP   93 (504)
T ss_dssp             HHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSEEEEEEECCBTTBCTTSCCSCEEECSS
T ss_pred             HHHHHHHHHHHhcCCCcceEEEEcCCCcEEEEecCCchhhhcCccccccCCCCEEEEEEccCcCCCCCccccCCeEeccC
Confidence            467899999999999999987642 1                         1234449999853        99844444


Q ss_pred             CcEEEEEEEEEcChHHHHHHhC----C-CCCCCHHHHHHHHHHHhhcC-CC---------chHHHHhccccceeEEEEEe
Q 029533           73 DDIFCLFQGHIENVALLKQQYG----L-NKTANEVIIVIEAYRTLRDR-GP---------YPADQVVRDIQGKFAFILYD  137 (192)
Q Consensus        73 ~~~~lv~nG~I~N~~eL~~~l~----~-~~~~~D~e~l~~ly~~~~~~-~~---------~g~~~~~~~L~G~fa~vi~d  137 (192)
                      .+++++|||+|+|+.+|+++|.    . +.+.+|+|+++++|.+..+. +.         .++.+++++|+|+|||++|+
T Consensus        94 ~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l~~~~~~~~g~~~~~~~~~~~a~~~~~~~l~G~fa~v~~~  173 (504)
T 1ecf_A           94 YGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVAMI  173 (504)
T ss_dssp             SCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHHHHHHHHCCEEEEEEEEE
T ss_pred             CCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHhccccccccccHHHHHHHhhhhcCccceEEEEE
Confidence            5699999999999999999872    3 78999999999999763211 10         13457899999999999997


Q ss_pred             CCCCEEEEEEcCCCCCcEEEEEec--C--CeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          138 SSSKNAFLASDADGSVPFFWGTDS--E--GHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       138 ~~~~~l~~aRD~~G~rPL~~~~~~--~--~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      . .++|+++|||+|+|||||+...  +  +.++||||.++|...+.+.+++++||+++
T Consensus       174 ~-~~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~ASE~~al~~~~~~~v~~l~PGe~v  230 (504)
T 1ecf_A          174 I-GHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAI  230 (504)
T ss_dssp             T-TTEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEECCTTEEE
T ss_pred             c-CCeEEEEECCCCCCceEEeecccCCCceEEEEEeCchHhhccCccEEEECCCCeEE
Confidence            5 4589999999999999999862  3  37999999999998877779999999986

>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*

Probab=99.96  E-value=1.3e-28  Score=225.92  Aligned_cols=158  Identities=15%  Similarity=0.156  Sum_probs=131.1

Q ss_pred             hhHHHHHHHHhHhcCCCCcCeeec--CC------------------------eEEeecccccccC--------CCceeee
Q 029533           26 ALKNGLLANHFSSVHPGSVTVNLG--SS------------------------GVIAYSLNRQNPL--------LPRLFAV   71 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~~~--~~------------------------~~l~~~~~r~~~~--------qP~~~~~   71 (192)
                      ...+..|++.|.|||||+.+++..  ++                        +.++++|+||+++        ||+ .+ 
T Consensus        13 ~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~l~~~l~~~~~~~~~~igH~R~at~g~~~~~n~qP~-~~-   90 (608)
T 2bpl_A           13 AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPH-VS-   90 (608)
T ss_dssp             HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESSHHHHHHHHHHSCCCCSEEEEEEECCCSSSCCGGGCSCE-EE-
T ss_pred             HHHHHHHHHHHHhcCCCcCceEEEecCCcEEEEeCCCcHHHHHHHhhccCCCCCEEEEEEccCCCCCCCccCCCCc-cC-
Confidence            457889999999999999998754  11                        2234449999854        997 33 


Q ss_pred             CCcEEEEEEEEEcChHHHHHHh---CC-CCCCCHHHHHHHHHHHhhcCCC---chHHHHhccccceeEEEEEeCCC-CEE
Q 029533           72 VDDIFCLFQGHIENVALLKQQY---GL-NKTANEVIIVIEAYRTLRDRGP---YPADQVVRDIQGKFAFILYDSSS-KNA  143 (192)
Q Consensus        72 ~~~~~lv~nG~I~N~~eL~~~l---~~-~~~~~D~e~l~~ly~~~~~~~~---~g~~~~~~~L~G~fa~vi~d~~~-~~l  143 (192)
                       ++++++|||+|+|+.+|+++|   +. +.+.+|+|+++++|++..+.|.   .++++++++|+|+|||++||... ++|
T Consensus        91 -~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi~~l~~~~~~~g~~~~~av~~~~~~l~G~fa~~i~d~~~~~~l  169 (608)
T 2bpl_A           91 -EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTL  169 (608)
T ss_dssp             -TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHHHHHHHTTCCCHHHHHHHHGGGCCSSEEEEEEETTCTTCE
T ss_pred             -CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcCceEEEEEecCCCCEE
Confidence             789999999999999999988   34 8899999999999987432231   24567999999999999999887 899


Q ss_pred             EEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          144 FLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       144 ~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      +++||+   |||||+.. ++.++||||.++|...+. .+.+++||+++
T Consensus       170 ~~aRd~---~PL~~g~~-~~~~~~aSe~~al~~~~~-~~~~l~~G~i~  212 (608)
T 2bpl_A          170 LAARSG---SPLVIGLG-MGENFIASDQLALLPVTR-RFIFLEEGDIA  212 (608)
T ss_dssp             EEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCC-EEEECCTTCEE
T ss_pred             EEEECC---CceEEEEe-CCeEEEEechHHHHhcCC-eEEEECCCeEE
Confidence            999997   99999995 577999999999988874 68999999986

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*

Probab=99.95  E-value=3.6e-28  Score=219.11  Aligned_cols=119  Identities=19%  Similarity=0.244  Sum_probs=103.8

Q ss_pred             cCCCceeee---CCcEEEEEEEEEcChHHHHHHhCC-CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeC
Q 029533           63 PLLPRLFAV---VDDIFCLFQGHIENVALLKQQYGL-NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDS  138 (192)
Q Consensus        63 ~~qP~~~~~---~~~~~lv~nG~I~N~~eL~~~l~~-~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~  138 (192)
                      ..||+..+.   +++++++|||+|||+.+|+++|+. +.+.+|+|+|+++|++      ||. +++++|+|+|||++||.
T Consensus        56 ~~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L~~~f~t~sDtEvil~l~~~------~g~-~~~~~l~G~fA~~i~d~  128 (513)
T 1jgt_A           56 VAPDRAVARSLTGAPTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLER------YDL-HAFRLVNGRFATVVRTG  128 (513)
T ss_dssp             SCGGGGEEEECSSSSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHHHHH------HGG-GGGGTCCEEEEEEEEET
T ss_pred             cCCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHhCCCCCCCCHHHHHHHHHHH------HhH-HhHhhcCeeEEEEEEEC
Confidence            358873322   378999999999999999999864 7899999999999998      786 79999999999999997


Q ss_pred             CCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhcc---------------CceeEEeCCCeee
Q 029533          139 SSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGC---------------GKSFAPFPKGIYE  191 (192)
Q Consensus       139 ~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~---------------~~~~~~~ppG~~~  191 (192)
                      .  +++++||++|+|||||+.. ++.++||||+++|...+               .+.++.+||||++
T Consensus       129 ~--~l~~aRD~~G~kPLyy~~~-~~~~~faSe~~aL~~~~~~~~~~l~~~~~~t~~~~i~~l~pG~~l  193 (513)
T 1jgt_A          129 D--RVLLATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADARRVAGLTGVYQVPAGAVM  193 (513)
T ss_dssp             T--EEEEEECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTSEECSSCSSCEECCTTEEE
T ss_pred             C--EEEEEECCCCCceeEEEEe-CCEEEEcchHHHHHhccCcccccccCCCccccccceEEcCCCcEE
Confidence            4  4999999999999999985 68899999999998876               2579999999986

>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*

Probab=99.92  E-value=8.6e-26  Score=203.13  Aligned_cols=127  Identities=13%  Similarity=0.084  Sum_probs=108.1

Q ss_pred             EEeecccccccC-----CCceeeeCCcEEEEEEEEEcChH---HHHHHhC-CCCCCCHHHHHHHHHHHhhcCCCchHHHH
Q 029533           53 VIAYSLNRQNPL-----LPRLFAVVDDIFCLFQGHIENVA---LLKQQYG-LNKTANEVIIVIEAYRTLRDRGPYPADQV  123 (192)
Q Consensus        53 ~l~~~~~r~~~~-----qP~~~~~~~~~~lv~nG~I~N~~---eL~~~l~-~~~~~~D~e~l~~ly~~~~~~~~~g~~~~  123 (192)
                      .++++|+|+++.     ||+ .+.+++++++  |+|||+.   +|+++|. .+.+.+|+|+|+++|++      ||. ++
T Consensus        27 ~~~igh~R~~t~~~~~~QP~-~~~~~~~~l~--GeI~N~~~~~eLr~~l~g~f~s~sDtEvil~l~~~------~g~-~~   96 (503)
T 1q15_A           27 GEALSNGYLFIEQNGHYQKC-EMERGTAYLI--GSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTR------LGA-NA   96 (503)
T ss_dssp             EEEETTEEEEEETTCCEEEE-ECSSSEEEEE--ECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHH------HCG-GG
T ss_pred             ceeEeeeeEEEcCCCCCCCc-CcCCCeEEEE--EEEeCCCChHHHHHHhhCCCCCCChHHHHHHHHHH------HHH-HH
Confidence            345559999854     997 4556677777  9999999   9999885 36788999999999997      776 79


Q ss_pred             hccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCe-----------------EEEEecchhhhhc-------cC
Q 029533          124 VRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGH-----------------LVLSDDVEIVKKG-------CG  179 (192)
Q Consensus       124 ~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~-----------------~~faSe~~al~~~-------~~  179 (192)
                      +++|+|+|||++||..++ |+++||++|+|||||+.. ++.                 ++||||.++|...       ..
T Consensus        97 l~~l~G~fa~~i~d~~~~-l~~aRD~~G~rPL~y~~~-~~~~~t~~l~l~~~~~~~~~~~faSE~~al~~~~~~~~~T~~  174 (503)
T 1q15_A           97 LALAEGDFCFFIDEPNGE-LTVITESRGFSPVHVVQG-KKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPV  174 (503)
T ss_dssp             GGGCCSSEEEEEECTTSC-EEEEECSSSSSCCEEEES-SSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTCCSB
T ss_pred             HHHcCEEEEEEEEeCCCC-EEEEECCCCCeeEEEEEe-CCceecccccccccccCCcceEEecchHHHHhccCCCCCccc
Confidence            999999999999998878 999999999999999985 566                 8999999999875       12


Q ss_pred             ceeEEeCCCeee
Q 029533          180 KSFAPFPKGIYE  191 (192)
Q Consensus       180 ~~~~~~ppG~~~  191 (192)
                      +.++.+|||+++
T Consensus       175 ~~v~~l~pG~~~  186 (503)
T 1q15_A          175 KNAQRLKPGAVH  186 (503)
T ss_dssp             TTEEECCSSEEE
T ss_pred             CCeEEECCCeEE
Confidence            469999999986

>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}

Probab=99.88  E-value=2.3e-22  Score=168.19  Aligned_cols=130  Identities=12%  Similarity=0.140  Sum_probs=97.1

Q ss_pred             EeecccccccC--------CCceeeeCCcEEEEEEEEEcChHHHHHHhC-----C----CCCCCHHHHHHHHHHHhh-cC
Q 029533           54 IAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVALLKQQYG-----L----NKTANEVIIVIEAYRTLR-DR  115 (192)
Q Consensus        54 l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~-----~----~~~~~D~e~l~~ly~~~~-~~  115 (192)
                      ++++|+|+++.        ||+. .  ++++++|||+|+|+.+|+++|.     .    +.+.+|+|+++++|.+.. +.
T Consensus        83 ~~igHvR~AT~g~~s~~n~qPf~-~--g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi~~l~~~~~~~~  159 (274)
T 3mdn_A           83 LFLSHVRASTGSCISRNNCHPFA-A--RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEGLEH  159 (274)
T ss_dssp             EEEEEC------------CCCEE-E--TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHHHHHTTTTT
T ss_pred             EEEEEEccccCCCCcccCCCCcc-c--CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHHHHHHHHhhhcC
Confidence            44559999854        9973 2  6899999999999999998873     1    268899999999995421 11


Q ss_pred             CC-chHHHHhccccce-----------eEEEEEeCCCCEEEEEEcC-CCCCcEEEEEecC--CeEEEEecchhhhhccCc
Q 029533          116 GP-YPADQVVRDIQGK-----------FAFILYDSSSKNAFLASDA-DGSVPFFWGTDSE--GHLVLSDDVEIVKKGCGK  180 (192)
Q Consensus       116 ~~-~g~~~~~~~L~G~-----------fa~vi~d~~~~~l~~aRD~-~G~rPL~~~~~~~--~~~~faSe~~al~~~~~~  180 (192)
                      .+ .++.+++++|+|+           |+|+++|.  ++|+++||+ .|++||+|+...+  +.++||||.  |...+ +
T Consensus       160 ~~~~al~~~l~~l~G~~~~~g~~~~~a~~~~~~d~--~~l~a~Rd~~~G~~Pll~~~~~~~~~~~~vASE~--l~~~~-~  234 (274)
T 3mdn_A          160 DPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDG--QTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEP--LETDE-G  234 (274)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEECS--SCEEEEEEESSSCCCCCEEEEETTTTEEEEESSC--C--CC-S
T ss_pred             CHHHHHHHHHHHHHhHHhhcCcccCceEEEEEEcC--CEEEEEECCCCCCCCeEEEEEeCCCCEEEEEecc--cccCC-c
Confidence            11 2456799999998           99999984  799999998 9999977776543  689999999  43333 4


Q ss_pred             eeEEeCCCeee
Q 029533          181 SFAPFPKGIYE  191 (192)
Q Consensus       181 ~~~~~ppG~~~  191 (192)
                      .++++|||+++
T Consensus       235 ~~~~v~pGeiv  245 (274)
T 3mdn_A          235 DWTELRPGRML  245 (274)
T ss_dssp             CCEECCSSEEE
T ss_pred             eEEEECcCEEE
Confidence            59999999986

>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1

Probab=99.70  E-value=8.5e-18  Score=139.23  Aligned_cols=132  Identities=11%  Similarity=0.036  Sum_probs=97.6

Q ss_pred             EeecccccccC--------CCceeee-CCcEEEEEEEEEcChHHHHHHhCCCCCCCHHHHHHHHHHHhhcC----CC--c
Q 029533           54 IAYSLNRQNPL--------LPRLFAV-VDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDR----GP--Y  118 (192)
Q Consensus        54 l~~~~~r~~~~--------qP~~~~~-~~~~~lv~nG~I~N~~eL~~~l~~~~~~~D~e~l~~ly~~~~~~----~~--~  118 (192)
                      ++++|+|+++.        ||+.... .++++++|||.|.|+.+ +.++..+.+.+|+|++++++.+..+.    .+  .
T Consensus        73 ~~IgHvR~AT~G~~~~~NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~~~~~~s~TDSEvi~~li~~~~~~~~~~~~~~~  151 (257)
T 1te5_A           73 TVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQP-KPGFYRPVGETDSEAAFCDLLNRVRRAFPEPVPVE  151 (257)
T ss_dssp             EEEEEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCC-CCCSSCCSSCCHHHHHHHHHHHHHHHHCSSCCCHH
T ss_pred             EEEEEeecCCCCCCCcCcCCCcEecCCCCeEEEEecCcccCchh-hhccCCcccCCHHHHHHHHHHHHHHHhcCCCchHH
Confidence            45559999854        9984332 35799999999999998 66544488999999999998753211    11  2


Q ss_pred             hHHHHhcccc------ceeEEEEEeCCCCEEEEEEc----------CCCCCcEEE-------EE---ecCCeEEEEecch
Q 029533          119 PADQVVRDIQ------GKFAFILYDSSSKNAFLASD----------ADGSVPFFW-------GT---DSEGHLVLSDDVE  172 (192)
Q Consensus       119 g~~~~~~~L~------G~fa~vi~d~~~~~l~~aRD----------~~G~rPL~~-------~~---~~~~~~~faSe~~  172 (192)
                      .+.++++++.      |.|++++.|.  ++|+++||          |+|.|||+.       +.   ..++.++||||. 
T Consensus       152 a~~~al~~l~~~~~~~G~~n~~l~~g--~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~~i~~g~~~~~~~~~~vvASE~-  228 (257)
T 1te5_A          152 VLLPVLISACDEYRKKGVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEP-  228 (257)
T ss_dssp             HHHHHHHHHHHHHHTTBCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEESSC-
T ss_pred             HHHHHHHHHHHHHHhcCcEEEEEEcC--CEEEEEEcCCceEEeecCCCcccccccccceeecccccCCCCCEEEEEeCc-
Confidence            4445666665      9999999884  79999999          999999975       31   113468999995 


Q ss_pred             hhhhccCceeEEeCCCeeeC
Q 029533          173 IVKKGCGKSFAPFPKGIYEI  192 (192)
Q Consensus       173 al~~~~~~~~~~~ppG~~~~  192 (192)
                       |. . .+.++++|||++++
T Consensus       229 -l~-~-~~~wr~v~pGe~v~  245 (257)
T 1te5_A          229 -LT-D-NENWTLQQSGEWVL  245 (257)
T ss_dssp             -SS-S-SSSCEEECTTCEEE
T ss_pred             -cC-C-CCCeeEeCCCEEEE
Confidence             43 2 35699999999863

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=99.67  E-value=2e-16  Score=154.53  Aligned_cols=129  Identities=14%  Similarity=0.140  Sum_probs=100.4

Q ss_pred             EeecccccccC--------CCceeeeCCcEEEEEEEEEcChHHHHHHh-------------------C-C-CCCCCHHHH
Q 029533           54 IAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVALLKQQY-------------------G-L-NKTANEVII  104 (192)
Q Consensus        54 l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l-------------------~-~-~~~~~D~e~  104 (192)
                      ++..|+|.++.        ||+.       +++|||+|.|...+++.+                   + . +.+.+|+|+
T Consensus       204 ~aigH~RySTnt~p~w~~AQPf~-------~laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~SDSev  276 (1479)
T 1ea0_A          204 FAIYHQRYSTNTFPTWPLAQPFR-------MLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGS  276 (1479)
T ss_dssp             EEEEEECCCSCSCCCSTTSSCCS-------SEEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHH
T ss_pred             EEEeeecccCCCCCCcccCCccE-------EEEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCCcHHH
Confidence            44559999853        8972       399999999999998653                   1 2 678899999


Q ss_pred             HHHHHHHhhcCCC---chH-------------------------HHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEE
Q 029533          105 VIEAYRTLRDRGP---YPA-------------------------DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFF  156 (192)
Q Consensus       105 l~~ly~~~~~~~~---~g~-------------------------~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~  156 (192)
                      +.++++.+...+.   ..+                         ..+++.++|+||+++.|  .+.++++|||.|.|||.
T Consensus       277 ld~~lelL~~~g~~l~~A~~~liPeaw~~~~~m~~~~~~fye~~~~~me~~dGp~slv~~d--g~~l~a~~DrnGlRPl~  354 (1479)
T 1ea0_A          277 LDTVFEVMVRAGRTAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTD--GRWVVGGMDRNGLRPMR  354 (1479)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSEEEEECS--SSEEEEECCTTCCSCCE
T ss_pred             HHHHHHHHHHcCCCHHHHHHHhCchhhcccccCCHHHHHHHHHHHHhhccCCCcEEEEEEe--CCEEEEEecCCCCcceE
Confidence            9666554322220   011                         13468999999999987  48999999999999999


Q ss_pred             EEEecCCeEEEEecchhhhhccCceeE--EeCCCeee
Q 029533          157 WGTDSEGHLVLSDDVEIVKKGCGKSFA--PFPKGIYE  191 (192)
Q Consensus       157 ~~~~~~~~~~faSe~~al~~~~~~~~~--~~ppG~~~  191 (192)
                      |+.++|+.+++|||..+|...+.+.++  ++.||+++
T Consensus       355 ~g~t~d~~~v~ASE~galdi~~a~~vrkg~l~PGemv  391 (1479)
T 1ea0_A          355 YTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGEMI  391 (1479)
T ss_dssp             EEEETTSEEEECSSSTTSCCCGGGEEEEEECCTTCEE
T ss_pred             EEEECCCEEEEEcccccccCcchheeeccCCCCCeEE
Confidence            999767789999999999777666667  99999986

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=99.63  E-value=2.4e-15  Score=147.24  Aligned_cols=157  Identities=13%  Similarity=0.083  Sum_probs=114.2

Q ss_pred             hhHHHHHHHHhHhcCCCCcCeee-cC--------------------------CeEEeecccccccC--------CCceee
Q 029533           26 ALKNGLLANHFSSVHPGSVTVNL-GS--------------------------SGVIAYSLNRQNPL--------LPRLFA   70 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~~-~~--------------------------~~~l~~~~~r~~~~--------qP~~~~   70 (192)
                      ...+....+.+.||+.++..+.. +.                          .+.++..|+|.++.        ||+.  
T Consensus       145 ~r~ly~~r~~le~~~~~~~yI~S~s~~~~vyKgmgl~~~v~~~y~dL~~~~~~g~~aigH~RySTnt~p~w~~AQPf~--  222 (1520)
T 1ofd_A          145 DRRLYIARSIIGKKLAEDFYVCSFSCRTIVYKGMVRSIILGEFYLDLKNPGYTSNFAVYHRRFSTNTMPKWPLAQPMR--  222 (1520)
T ss_dssp             HHHHHHHHHHHGGGCBTTBEEEEEESSEEEEEESSCHHHHHHHBHHHHCTTCCBSEEEEEECCCSSSCCCGGGSSCCS--
T ss_pred             HHHHHHHHHHHHhhccCCEEEEEecCcEEEEeCCccHHHHhhhhhhccccccceeEEEEEccccCCCCCCcccCCchh--
Confidence            34567788999999854332221 10                          12344559999854        9972  


Q ss_pred             eCCcEEEEEEEEEcChHHHH------HH------h--------C--CCCCCCHHHHHHHHHHHhhcCCC---chH-----
Q 029533           71 VVDDIFCLFQGHIENVALLK------QQ------Y--------G--LNKTANEVIIVIEAYRTLRDRGP---YPA-----  120 (192)
Q Consensus        71 ~~~~~~lv~nG~I~N~~eL~------~~------l--------~--~~~~~~D~e~l~~ly~~~~~~~~---~g~-----  120 (192)
                           +++|||+|.|...++      +.      +        +  .+.+.+|+|++.++++.+...+.   ..+     
T Consensus       223 -----~LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDSe~ld~~lelL~~~g~~l~~A~~~liP  297 (1520)
T 1ofd_A          223 -----LLGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTGRSPLEAAMILVP  297 (1520)
T ss_dssp             -----SEEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHSC
T ss_pred             -----eeEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcHHHHHHHHHHHHhcCCCHHHHHHHhCc
Confidence                 399999999887777      21      1        2  27889999999766653322220   011     


Q ss_pred             ----------------------HHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhcc
Q 029533          121 ----------------------DQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGC  178 (192)
Q Consensus       121 ----------------------~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~  178 (192)
                                            ..+++.++|+||+++.|.  +.++++|||.|.|||.|+.++|+.+++|||..+|...+
T Consensus       298 eaw~~~~~m~~~~~~~~fyey~~~~me~~dGpaalv~~dg--~~l~a~~DrnGlRPl~~~~t~d~~~v~ASE~galdi~~  375 (1520)
T 1ofd_A          298 EAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDG--KIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDLPE  375 (1520)
T ss_dssp             CCCTTCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECS--SEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCCCG
T ss_pred             chhcccccccccHHHHHHHHHHHHhcccCCCCEEEEEEeC--CEEEEEecCCCCCceEEEEeCCCEEEEEcccccccCcc
Confidence                                  112588999999999884  89999999999999999998667899999999997777


Q ss_pred             CceeE--EeCCCeee
Q 029533          179 GKSFA--PFPKGIYE  191 (192)
Q Consensus       179 ~~~~~--~~ppG~~~  191 (192)
                      .+.++  ++.||+++
T Consensus       376 a~~vrkg~l~PGemv  390 (1520)
T 1ofd_A          376 VDIVEKGRLAPGQMI  390 (1520)
T ss_dssp             GGEEEEEECCTTCEE
T ss_pred             hheeeccCCCCCeEE
Confidence            67777  99999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d1ct9a2	192	Asparagine synthetase B, N-terminal domain {Escher	100.0
d1jgta2	206	beta-Lactam synthetase {Streptomyces clavuligerus	100.0
d1gph12	234	Glutamine PRPP amidotransferase, N-terminal domain	99.97
d1ecfa2	249	Glutamine PRPP amidotransferase, N-terminal domain	99.97
d1q15a2	204	beta-Lactam synthetase {Pectobacterium carotovorum	99.96
d1xffa_	238	Glucosamine 6-phosphate synthase, N-terminal domai	99.95
d1te5a_	253	Hypothetical protein YafJ (PA1307) {Pseudomonas ae	99.02
d1ofda3	430	Alpha subunit of glutamate synthase, N-terminal do	98.98
d1ea0a3	422	Alpha subunit of glutamate synthase, N-terminal do	98.97

>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-41  Score=269.65  Aligned_cols=157  Identities=23%  Similarity=0.406  Sum_probs=141.5

Q ss_pred             hhhHHHHHHHHhHhcCCCCcCeeecCCeEEeecccccccC------CCceeeeCCcEEEEEEEEEcChHHHHHHhCC---
Q 029533           25 CALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPL------LPRLFAVVDDIFCLFQGHIENVALLKQQYGL---   95 (192)
Q Consensus        25 ~~~~~~~m~~~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~~---   95 (192)
                      ..+.+.+|++.|+|||||+.+++..++.+|+  |+|++++      ||+ +..++++++++||+|||+.+|++++..   
T Consensus        16 ~~~~~~~m~~~l~hRGpD~~~~~~~~~~~lg--h~Rlsi~~~~~~~~~~-~~~~~~~~lv~NGeI~N~~~l~~~l~~~~~   92 (192)
T d1ct9a2          16 LRKKALELSRLMRHRGPDWSGIYASDNAILA--HERLSIVDVNAGAQPL-YNQQKTHVLAVNGEIYNHQALRAEYGDRYQ   92 (192)
T ss_dssp             HHHHHHHHHHTTGGGCBTEEEEEECSSEEEE--EEECCCSCTTTCCSSE-ECTTSCEEEEEEEEETTHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHhcccCCCCCCeEEeCCEEEE--EEEEEEccccCCcccc-cccCCceEEEecCccchhHHHHHHHhcCcc
Confidence            3578899999999999999999999999898  9999865      665 466788999999999999999999852   


Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhh
Q 029533           96 NKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVK  175 (192)
Q Consensus        96 ~~~~~D~e~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~  175 (192)
                      +.+.+|+|+++++|++      ||. ++++.|+|+|||++||..+++|+++||++|+|||||+.++++.++||||+++|.
T Consensus        93 ~~s~sDtevll~~~~~------~g~-~~~~~l~G~fa~~i~d~~~~~l~~aRD~~G~kPLyy~~~~~g~~~fsSE~k~L~  165 (192)
T d1ct9a2          93 FQTGSDCEVILALYQE------KGP-EFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALV  165 (192)
T ss_dssp             CCSCCTTHHHHHHHHH------HTT-TTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTT
T ss_pred             cCCCCcHHHHHHHhhh------cch-hhhhhhhhheEEEEEecCcceeEEEEccccceeEEEEEecCcEEEEEeCHHHHH
Confidence            6778999999999998      776 799999999999999999999999999999999999986567899999999999


Q ss_pred             hccCceeEEeCCCeeeC
Q 029533          176 KGCGKSFAPFPKGIYEI  192 (192)
Q Consensus       176 ~~~~~~~~~~ppG~~~~  192 (192)
                      ..+. .+++||||||++
T Consensus       166 ~~~~-~i~~~~pG~~l~  181 (192)
T d1ct9a2         166 PVCR-TIKEFPAGSYLW  181 (192)
T ss_dssp             TTCS-EEEECCTTEEEE
T ss_pred             HhhC-CeEEcCCccEEE
Confidence            9985 699999999873

>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=100.00  E-value=3.8e-33  Score=222.75  Aligned_cols=142  Identities=15%  Similarity=0.169  Sum_probs=123.3

Q ss_pred             HhHhcCCCCcCeeecCCeEEeecccccccC-----CCceeeeCCcEEEEEEEEEcChHHHHHHhCC-CCCCCHHHHHHHH
Q 029533           35 HFSSVHPGSVTVNLGSSGVIAYSLNRQNPL-----LPRLFAVVDDIFCLFQGHIENVALLKQQYGL-NKTANEVIIVIEA  108 (192)
Q Consensus        35 ~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~-----qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~~-~~~~~D~e~l~~l  108 (192)
                      ..+||+||....+...++.|+  |+++.+.     ||+  . ..+.++|+||||||+.+|+++|+. +.+.+|+|+++++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~l~--h~~~~~~~~~~~qp~--~-~~~~~~v~NGeIyN~~eL~~~lg~~~~s~sDtEvil~l  102 (206)
T d1jgta2          28 RGSHTDIDTPQGERSLAATLV--HAPSVAPDRAVARSL--T-GAPTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRL  102 (206)
T ss_dssp             CSEEEECCCTTGGGSCEEEEE--ECTTSCGGGGEEEEC--S-SSSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHH
T ss_pred             hhhccCCCCCCcccccceeec--ccccccCCcccCccc--C-CCCEEEEEEEEecCHHHHHHHhCCCCCCCCchHHHHHH
Confidence            446999999888888788888  8887643     997  2 346899999999999999999987 7889999999999


Q ss_pred             HHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhcc----------
Q 029533          109 YRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGC----------  178 (192)
Q Consensus       109 y~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~----------  178 (192)
                      |++      ||. +++++|+|+|||++||+  ++++++||++|.|||||+.. ++.++||||+++|....          
T Consensus       103 ~~~------~G~-~~l~~l~G~Fa~vi~d~--~~l~laRD~~G~KPLyy~~~-~~~~~fASe~kaLl~~~~~~~~~~~~~  172 (206)
T d1jgta2         103 LER------YDL-HAFRLVNGRFATVVRTG--DRVLLATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADA  172 (206)
T ss_dssp             HHH------HGG-GGGGTCCEEEEEEEEET--TEEEEEECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTS
T ss_pred             hhh------hCH-HHHHHHHhhhheeeeec--ceEEEEEecccceeEEEEEc-CCceEechhhHHHHhCCchhhhhhhcc
Confidence            998      887 89999999999999995  68999999999999999996 68899999999997643          


Q ss_pred             -----CceeEEeCCCeee
Q 029533          179 -----GKSFAPFPKGIYE  191 (192)
Q Consensus       179 -----~~~~~~~ppG~~~  191 (192)
                           .+.+..+|||+++
T Consensus       173 ~~~T~~kgI~~lppG~~l  190 (206)
T d1jgta2         173 RRVAGLTGVYQVPAGAVM  190 (206)
T ss_dssp             EECSSCSSCEECCTTEEE
T ss_pred             cCcchhhCeeEECCCcEE
Confidence                 2458999999986

>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.97  E-value=2e-31  Score=216.03  Aligned_cols=163  Identities=14%  Similarity=0.123  Sum_probs=131.2

Q ss_pred             hhHHHHHHHHhHhcCCCCcCeeecC-------------------------CeEEeecccccccC--------CCceee--
Q 029533           26 ALKNGLLANHFSSVHPGSVTVNLGS-------------------------SGVIAYSLNRQNPL--------LPRLFA--   70 (192)
Q Consensus        26 ~~~~~~m~~~l~~RGpd~~~~~~~~-------------------------~~~l~~~~~r~~~~--------qP~~~~--   70 (192)
                      ...+..|+.+|+|||||+.|++...                         .+.++++|+|++++        ||+...  
T Consensus        13 ~~~~~~~l~~lqhRG~Ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~igh~r~~t~g~~~~~~~~p~~~~~~   92 (234)
T d1gph12          13 PQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIGHVRYATAGGGGYENVQPLLFRSQ   92 (234)
T ss_dssp             HHHHHHHHHTTGGGCSSCEEEEEECSSCEEEEEESSCHHHHTCSSSTTTCCCSEEEEEECCCSSSCBCGGGSSCEEEBCT
T ss_pred             HHHHHHHHHHhhcCCcccCcEEEEcCCEEEEEecCCcccccchhhhcccCCCceeeeeecccccCCchhccccccceecc
Confidence            3457789999999999999876421                         12234449999853        775322  


Q ss_pred             eCCcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCC-CchHHHHhccccceeEEEEEeCCCCEEEE
Q 029533           71 VVDDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRG-PYPADQVVRDIQGKFAFILYDSSSKNAFL  145 (192)
Q Consensus        71 ~~~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~-~~g~~~~~~~L~G~fa~vi~d~~~~~l~~  145 (192)
                      .+++++++|||+|+|+.+|+++|.   . +.+.+|+|+++++++...... ..++++++++|+|+|||++++.  +.+++
T Consensus        93 ~~~~~~lvhNG~I~N~~eL~~~l~~~g~~f~~~td~e~~~~~~~~~~~~~~~~ai~~~~~~l~G~~a~~i~~~--~~~~~  170 (234)
T d1gph12          93 NNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFLIMTE--TEMIV  170 (234)
T ss_dssp             TTCCEEEEEEEEETTHHHHHHHHHHTTCCBSSCCHHHHHHHHHHTCCCSSHHHHHHHHHTTCCEEEEEEEECS--SCEEE
T ss_pred             ccceEEEEecccccCHHHHHHHHHHcCCeeeeecchhHHHHHHHHHhhhhHHHHHHHHHHhcCCceEEEEeec--CceeE
Confidence            356899999999999999999984   3 789999999999987521111 0346789999999999999984  68999


Q ss_pred             EEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          146 ASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       146 aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      +||+.|.|||||+.. ++.++||||.+||.....+.+++++|||++
T Consensus       171 ~rD~~G~~PL~~g~~-~~~~~~aSE~~al~~~~~~~i~el~pGeii  215 (234)
T d1gph12         171 ALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEML  215 (234)
T ss_dssp             EECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEEE
T ss_pred             EEcCCCCcCEEEEec-CCEEEEEECHHHHhhcCCcEEEEcCCCEEE
Confidence            999999999999996 578999999999988777778999999986

>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.8e-29  Score=205.45  Aligned_cols=164  Identities=12%  Similarity=0.063  Sum_probs=130.3

Q ss_pred             hHHHHHHHHhHhcCCCCcCeeecC--------------------------CeEEeecccccccC--------CCceeeeC
Q 029533           27 LKNGLLANHFSSVHPGSVTVNLGS--------------------------SGVIAYSLNRQNPL--------LPRLFAVV   72 (192)
Q Consensus        27 ~~~~~m~~~l~~RGpd~~~~~~~~--------------------------~~~l~~~~~r~~~~--------qP~~~~~~   72 (192)
                      ..+..|+++|+|||+|+.|+.+..                          .+.++++|+||+++        ||+..+.+
T Consensus        14 ~~l~~gL~~LqhRG~DsaGIa~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~g~~gIGHtR~aT~G~~~~~nahP~~~~~~   93 (249)
T d1ecfa2          14 QSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSP   93 (249)
T ss_dssp             HHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSEEEEEEECCBTTBCTTSCCSCEEECSS
T ss_pred             HHHHHHHHHHhccCcCeeEEEEEECCCEEEEEEcCCccchhhhhhhhccCCCceeeeEeecccCCCCchhcccccccCCC
Confidence            466789999999999999876421                          12234449999965        89645566


Q ss_pred             CcEEEEEEEEEcChHHHHHHh----CC-CCCCCHHHHHHHHHHHhhcCCC----------chHHHHhccccceeEEEEEe
Q 029533           73 DDIFCLFQGHIENVALLKQQY----GL-NKTANEVIIVIEAYRTLRDRGP----------YPADQVVRDIQGKFAFILYD  137 (192)
Q Consensus        73 ~~~~lv~nG~I~N~~eL~~~l----~~-~~~~~D~e~l~~ly~~~~~~~~----------~g~~~~~~~L~G~fa~vi~d  137 (192)
                      +++++||||+|+|+.+|++.+    +. |.+.+|+|++++++....+...          .+++.+++.|+|+|++++..
T Consensus        94 ~~~~lvhNG~I~Ny~eL~~~~l~~~g~~f~s~tDtEvi~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~l~Gs~~~~~~~  173 (249)
T d1ecfa2          94 YGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVAMI  173 (249)
T ss_dssp             SCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHHHHHHHHCCEEEEEEEEE
T ss_pred             CcEEEEeeeeeccHHHHHHHHHHhcCccccccchHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhcCCCceEEEEe
Confidence            789999999999999996654    23 8999999999999976433210          24567889999999998886


Q ss_pred             CCCCEEEEEEcCCCCCcEEEEEec----CCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          138 SSSKNAFLASDADGSVPFFWGTDS----EGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       138 ~~~~~l~~aRD~~G~rPL~~~~~~----~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      . ...++++||+.|+||||||...    ++.++||||.+||...+.+.+++++||+++
T Consensus       174 ~-~~~~~~~rD~~GirPL~~G~~~~~~~~~~~~vaSE~~Al~~~~~~~i~~l~pGe~v  230 (249)
T d1ecfa2         174 I-GHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAI  230 (249)
T ss_dssp             T-TTEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEECCTTEEE
T ss_pred             c-CCCceEEEecCCCccceeccccccCCCcEEEEEeCHHHHhhcCceEEEEcCCCeEE
Confidence            4 5689999999999999999852    246899999999988777778999999985

>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Pectobacterium carotovorum [TaxId: 554]

Probab=99.96  E-value=4.1e-31  Score=210.17  Aligned_cols=125  Identities=10%  Similarity=0.027  Sum_probs=102.8

Q ss_pred             HhHhcCCCCcCeeecCCeEEeecccccccC-------CCceeeeCCcEEEEEEEEEcChHHHHHHhCC----CCCCCHHH
Q 029533           35 HFSSVHPGSVTVNLGSSGVIAYSLNRQNPL-------LPRLFAVVDDIFCLFQGHIENVALLKQQYGL----NKTANEVI  103 (192)
Q Consensus        35 ~l~~RGpd~~~~~~~~~~~l~~~~~r~~~~-------qP~~~~~~~~~~lv~nG~I~N~~eL~~~l~~----~~~~~D~e  103 (192)
                      ++.|||||.......+.....  ++|+++.       ||......+++++++||||||+.+||++|..    +.+.+|+|
T Consensus         5 c~~~rgpd~~~~~~~~~~~~~--~~rLsi~~l~~~~n~~~~~~~~~ry~~~~nGEIYN~~~lr~~l~~~~~~~~~~sDtE   82 (204)
T d1q15a2           5 CVVYKGSDTDINNIQRDFDGK--GEALSNGYLFIEQNGHYQKCEMERGTAYLIGSLYNRTFLIGLAGVWEGEAYLANDAE   82 (204)
T ss_dssp             EEEETCCHHHHHHHHTTSCEE--EEEETTEEEEEETTCCEEEEECSSSEEEEEECCSCHHHHHHHHTTTCGGGGGCCHHH
T ss_pred             eEEEeCCCccchhhhhhhcch--hhhhcchhhhhcccCCCCcccCCcEEEEEEEEEcCHHHHHHHHHHcCCCccCCChHH
Confidence            578999998765555555555  6777743       8863335688999999999999999998852    67889999


Q ss_pred             HHHHHHHHhhcCCCchHHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEec
Q 029533          104 IVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDD  170 (192)
Q Consensus       104 ~l~~ly~~~~~~~~~g~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe  170 (192)
                      +++++|++      ||. +++++|+|+|||+|+|+ +++++++|||+|.|||||..+ ++.++|||+
T Consensus        83 vll~~~~~------~G~-~~l~~l~G~Faf~i~~~-~~~l~l~RD~~G~KPLyY~~~-~~~~ifSS~  140 (204)
T d1q15a2          83 LLALLFTR------LGA-NALALAEGDFCFFIDEP-NGELTVITESRGFSPVHVVQG-KKAWMTNSL  140 (204)
T ss_dssp             HHHHHHHH------HCG-GGGGGCCSSEEEEEECT-TSCEEEEECSSSSSCCEEEES-SSEEEESCH
T ss_pred             HHHHHHHH------HHH-HHHHhhCCceEEEEecC-CceEEEEECCCCccceEEEec-CCEEEEEec
Confidence            99999998      886 89999999999999775 578999999999999999985 566777665

>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glucosamine 6-phosphate synthase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=6.3e-27  Score=189.87  Aligned_cols=157  Identities=14%  Similarity=0.116  Sum_probs=124.4

Q ss_pred             hHHHHHHHHhHhcCCCCcCeeec----------------------------CCeEEeecccccccC------CCceeeeC
Q 029533           27 LKNGLLANHFSSVHPGSVTVNLG----------------------------SSGVIAYSLNRQNPL------LPRLFAVV   72 (192)
Q Consensus        27 ~~~~~m~~~l~~RGpd~~~~~~~----------------------------~~~~l~~~~~r~~~~------qP~~~~~~   72 (192)
                      ..+..|+++|+|||||+.|+.+-                            +..++|  |+|+++.      ||+.+ ..
T Consensus        14 ~~l~~~l~~lqhRG~Ds~Gi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~g~~~ig--H~R~aT~g~~~~~n~~p~-~~   90 (238)
T d1xffa_          14 EILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIA--HTRWATHGEPSEVNAHPH-VS   90 (238)
T ss_dssp             HHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSEEEE--EEECCSSSCSSTTTSSCE-EE
T ss_pred             HHHHHHHHHhcccCccccCEEEEcCCCCEEEEeeccccccccccccccccCCcEEEe--eecccccccccccCCccc-cC
Confidence            46778999999999999887642                            124455  9999864      33312 34


Q ss_pred             CcEEEEEEEEEcChHHHHHHhC---C-CCCCCHHHHHHHHHHHhhcCC-C--chHHHHhccccceeEEEEEeCCC-CEEE
Q 029533           73 DDIFCLFQGHIENVALLKQQYG---L-NKTANEVIIVIEAYRTLRDRG-P--YPADQVVRDIQGKFAFILYDSSS-KNAF  144 (192)
Q Consensus        73 ~~~~lv~nG~I~N~~eL~~~l~---~-~~~~~D~e~l~~ly~~~~~~~-~--~g~~~~~~~L~G~fa~vi~d~~~-~~l~  144 (192)
                      ++++++|||+|+|+.+|+++|.   . +.+.+|+|++++++......+ .  .++.++++.|+|+||+++++... ..++
T Consensus        91 ~~~~~vhNG~I~N~~~L~~~L~~~g~~f~s~sDtEvi~~l~~~~~~~~~~~~e~i~~~~~~l~G~~a~~i~~~~~~~~i~  170 (238)
T d1xffa_          91 EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLL  170 (238)
T ss_dssp             TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCEEEEEEEEETTCTTCEE
T ss_pred             CcEEEEEcCcccCHHHHHHHHHHcCCCcccCCcchhhhhhhhHhhhcCCCHHHHHHHHHHHccCchhhhhhhccCCCEEE
Confidence            6899999999999999999883   3 889999999999997643222 1  25678999999999999999754 6788


Q ss_pred             EEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEEeCCCeee
Q 029533          145 LASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAPFPKGIYE  191 (192)
Q Consensus       145 ~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~~ppG~~~  191 (192)
                      .+||.   |||||+.. ++.++||||.++|...+. .+..++||++.
T Consensus       171 ~~~~~---~PL~~g~~-~~~~~~aSE~~al~~~~~-~~~~l~~gei~  212 (238)
T d1xffa_         171 AARSG---SPLVIGLG-MGENFIASDQLALLPVTR-RFIFLEEGDIA  212 (238)
T ss_dssp             EEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCS-EEEECCTTCEE
T ss_pred             EECCC---ccCEEEEC-CceEEEEcCHHHHHHhhc-eEEEeCCCeEE
Confidence            88873   99999995 577999999999998875 47788888864

>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Hypothetical protein YafJ (PA1307)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.02  E-value=1.1e-10  Score=93.68  Aligned_cols=132  Identities=11%  Similarity=0.078  Sum_probs=81.1

Q ss_pred             EeecccccccC--------CCceee-eCCcEEEEEEEEEcChHHHHHHhCCCCCCCHHHHHHHHHHH-hhcCCC--ch--
Q 029533           54 IAYSLNRQNPL--------LPRLFA-VVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRT-LRDRGP--YP--  119 (192)
Q Consensus        54 l~~~~~r~~~~--------qP~~~~-~~~~~~lv~nG~I~N~~eL~~~l~~~~~~~D~e~l~~ly~~-~~~~~~--~g--  119 (192)
                      ++++|.|+++.        ||++.. .+++++++|||.|.|+.+++..+. ..+.+|+|.+.+++.. +.+..+  ..  
T Consensus        72 ~~igHvR~AT~G~~~~~N~hPf~~~~~~~~~~f~HNG~i~n~~~l~~~~~-~~g~tDse~~~~~i~~~l~~~~~~~~~~~  150 (253)
T d1te5a_          72 TVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQPKPGFYR-PVGETDSEAAFCDLLNRVRRAFPEPVPVE  150 (253)
T ss_dssp             EEEEEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCCCCCSSC-CSSCCHHHHHHHHHHHHHHHHCSSCCCHH
T ss_pred             EEEEEeeeccCCCCccccCCceEEEcCCCCEEEEEeeeEechhhhhhhhc-ccCCCccchhHHHHHHHHHhccccCCchH
Confidence            34449999854        997543 346789999999999998876553 4678999998776643 211111  11  


Q ss_pred             -----HHHHhccc--cceeEEEEEeCCCCEEEE--------EEcCCCCCcEEEEEec------------CCeEEEEecch
Q 029533          120 -----ADQVVRDI--QGKFAFILYDSSSKNAFL--------ASDADGSVPFFWGTDS------------EGHLVLSDDVE  172 (192)
Q Consensus       120 -----~~~~~~~L--~G~fa~vi~d~~~~~l~~--------aRD~~G~rPL~~~~~~------------~~~~~faSe~~  172 (192)
                           +.+..+.+  .+.+++++.|.  +.+++        .||+.+.+|+++....            +..+++|||. 
T Consensus       151 ~~~~~~~~~~~~~~~~~~~n~~~~dg--~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivASep-  227 (253)
T d1te5a_         151 VLLPVLISACDEYRKKGVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEP-  227 (253)
T ss_dssp             HHHHHHHHHHHHHHTTBCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEESSC-
T ss_pred             HHHHHHHHHHHhhccceEEEEEccCC--CEEEEEecCCceEEEEccCCCceeeccCCCceEEeccccCCCCEEEEEecc-
Confidence                 11223333  35677777764  44554        4666777787765421            1234566663 


Q ss_pred             hhhhccCceeEEeCCCeeeC
Q 029533          173 IVKKGCGKSFAPFPKGIYEI  192 (192)
Q Consensus       173 al~~~~~~~~~~~ppG~~~~  192 (192)
                       |.  ..+.+++++||++++
T Consensus       228 -l~--~~~~w~~i~~Ge~vv  244 (253)
T d1te5a_         228 -LT--DNENWTLQQSGEWVL  244 (253)
T ss_dssp             -SS--SSSSCEEECTTCEEE
T ss_pred             -cc--CCCCEEEeCCCeEEE
Confidence             11  123579999999863

>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Synechocystis sp. [TaxId: 1143]

Probab=98.98  E-value=1.8e-09  Score=92.67  Aligned_cols=66  Identities=15%  Similarity=0.141  Sum_probs=52.2

Q ss_pred             hccccceeEEEEEeCCCCEEEEEEcCCCCCcEEEEEecCCeEEEEecchhhhhccCceeEE--eCCCeee
Q 029533          124 VRDIQGKFAFILYDSSSKNAFLASDADGSVPFFWGTDSEGHLVLSDDVEIVKKGCGKSFAP--FPKGIYE  191 (192)
Q Consensus       124 ~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL~~~~~~~~~~~faSe~~al~~~~~~~~~~--~ppG~~~  191 (192)
                      ++-.+|++++++-|.  +.+.+..||.|.||+-|..++|+.+++|||.-++.--..+.++.  +.||+++
T Consensus       323 mEpWDGPA~i~ftdG--~~iga~lDRnGLRP~Ry~~t~d~~~i~aSE~Gv~~~~~~~v~~kgrl~PG~m~  390 (430)
T d1ofda3         323 QEPWDGPALLVFSDG--KIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDLPEVDIVEKGRLAPGQMI  390 (430)
T ss_dssp             CCCCCSSEEEEEECS--SEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCCCGGGEEEEEECCTTCEE
T ss_pred             hhcccCCEEEEEecC--CEEEEEecCCCCCcceEEEecCCEEEEEeccccccCChhheeeccCCCCCcEE
Confidence            345679999999884  89999999999999988887788889999998774322232333  8999876

>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Azospirillum brasilense [TaxId: 192]

Probab=98.97  E-value=1.4e-09  Score=93.41  Aligned_cols=130  Identities=15%  Similarity=0.159  Sum_probs=87.4

Q ss_pred             EEeecccccccC--------CCceeeeCCcEEEEEEEEEcChHHHH-------------------HHhC-C-CCCCCHHH
Q 029533           53 VIAYSLNRQNPL--------LPRLFAVVDDIFCLFQGHIENVALLK-------------------QQYG-L-NKTANEVI  103 (192)
Q Consensus        53 ~l~~~~~r~~~~--------qP~~~~~~~~~~lv~nG~I~N~~eL~-------------------~~l~-~-~~~~~D~e  103 (192)
                      .++..|+|.++.        ||+  .     .++|||||--...-+                   +++. + ....||+.
T Consensus       203 ~~al~H~RFSTNT~PsW~lAQPF--R-----~laHNGEINTi~gN~nwm~are~~~~s~~~~~~~~~l~pii~~~~SDSa  275 (422)
T d1ea0a3         203 DFAIYHQRYSTNTFPTWPLAQPF--R-----MLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSG  275 (422)
T ss_dssp             SEEEEEECCCSCSCCCSTTSSCC--S-----SEEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHH
T ss_pred             EEEEEEeeeeccCCCchhhcCce--e-----eecCCCchhhhhhhHHHHHHhhhhccccccccchhhhhcccCCCCccch
Confidence            355559999854        886  2     699999996332111                   1121 2 45679998


Q ss_pred             HHHHHHHHhhcCCC-------------ch---------------HHHHhccccceeEEEEEeCCCCEEEEEEcCCCCCcE
Q 029533          104 IVIEAYRTLRDRGP-------------YP---------------ADQVVRDIQGKFAFILYDSSSKNAFLASDADGSVPF  155 (192)
Q Consensus       104 ~l~~ly~~~~~~~~-------------~g---------------~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPL  155 (192)
                      .+-.+++.+-..|-             |.               ...+++..+|+.++++-|  .+.+.+..||.|.||+
T Consensus       276 ~lDn~lElL~~~G~sl~~a~~mliP~aw~~~~~m~~~~r~fyey~~~~~epwdGPA~i~ftd--g~~~ga~lDRnGLRP~  353 (422)
T d1ea0a3         276 SLDTVFEVMVRAGRTAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTD--GRWVVGGMDRNGLRPM  353 (422)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSEEEEECS--SSEEEEECCTTCCSCC
T ss_pred             hHHHHHHHHHHcCCcHHHHHHhhchhhhhccccccHHHHHHHHHHHhhccccCCCeEEEEec--CCEEEEEecCCCCCcc
Confidence            87666654321110             11               012456779999999987  4799999999999999


Q ss_pred             EEEEecCCeEEEEecchhhhhccCcee--EEeCCCeee
Q 029533          156 FWGTDSEGHLVLSDDVEIVKKGCGKSF--APFPKGIYE  191 (192)
Q Consensus       156 ~~~~~~~~~~~faSe~~al~~~~~~~~--~~~ppG~~~  191 (192)
                      -|+.++|+.+++|||.-.+.--..+.+  ..+.||+++
T Consensus       354 ry~~t~d~~~i~aSE~Gv~~~~~~~v~~kgrl~PG~~~  391 (422)
T d1ea0a3         354 RYTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGEMI  391 (422)
T ss_dssp             EEEEETTSEEEECSSSTTSCCCGGGEEEEEECCTTCEE
T ss_pred             eEEEecCCEEEEEeccccccCCHHHeeeccCCCCCceE
Confidence            888877788888999887742222233  358999876