Citrus Sinensis ID: 029554

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MRAFGAFQRSSLLLRRRRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHccccccEEEEEEccHHHHHHHHHHcHHHccccccEEEEEccccccccccccEEEEEEcccccccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHcHcccccccHEcccccEccccccccccccccccEEccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccEEEcccccHHHHHHHHccccccEEEEEcccHHHHHHHccccccccccccccEEEEccccccccccccccEEEEcccHHHHcccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mrafgafqRSSLLLRRRrannepyalvpsgsfctdngfettsngssrvSIFDRHLKRKQRDRaawltrpndsfVDAVAENLLDRLEDCRKtfptalclggSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQqdahndnietcfvvgdeeflplkeSSLDLAISCLglhwtndlpgaMIQVSIFLLPD
Flexible Loop (DISEMBL)
mrafgafqrsslllrRRRANnepyalvpsgsfctdngfettsngssrvsifdrhLKRKQRdraawltrpndsfvDAVAENLLDRLEDCRKTfptalclggsleaVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD
Low Complexity Region (SEG)
MRAFGAFQrsslllrrrrANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD
Disordered region (IsUnstruct)
************************ALV**GSFCT***************IF**********RAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLL**
Disordered Region (DISOPRED)
********RSSLLLRRRRANNEPYAL************************FDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD
Disordered Region (DISEMBL)
MRAFGAFQRSSLLLRRRRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD
Disordered Region (DISPRO)
**************RRRRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRAFGAFQRSSLLLRRRRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	191	2.2.26 [Sep-21-2011]
O80543	355	Putative methyltransferas	yes	no	0.931	0.501	0.650	1e-62
Q5TEU4	345	NADH dehydrogenase [ubiqu	yes	no	0.748	0.414	0.371	1e-19
Q5RBS1	345	NADH dehydrogenase [ubiqu	yes	no	0.701	0.388	0.371	6e-19
A3KP37	321	NADH dehydrogenase [ubiqu	yes	no	0.712	0.423	0.356	1e-17
A2APY7	343	NADH dehydrogenase [ubiqu	yes	no	0.764	0.425	0.347	1e-17
B2GV71	343	NADH dehydrogenase [ubiqu	yes	no	0.701	0.390	0.351	2e-17
Q54JW0	436	NADH dehydrogenase [ubiqu	yes	no	0.764	0.334	0.264	5e-05
B2IAI0	295	Malonyl-CoA O-methyltrans	yes	no	0.654	0.423	0.261	0.0008

>sp|O80543|Y1280_ARATH Putative methyltransferase At1g22800 OS=Arabidopsis thaliana GN=At1g22800 PE=2 SV=2

 Score =  238 bits (608), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 121/186 (65%), Positives = 146/186 (78%), Gaps = 8/186 (4%)

Query: 13  LLRR--RRANNEPYALVPSGSFCTDNGF----ETTSNGSSRVSIFDRHLKRKQRDRAAWL 66
           LL+R   ++  + +  + S SF T+  +    E   N SS+V IFDR LKR  RDRAAWL
Sbjct: 13  LLKRVPEKSTKQAHTFLASLSFSTEGAYGGDGEFQQN-SSKVKIFDRDLKRIHRDRAAWL 71

Query: 67  TR-PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY 125
           +R  NDSFVDAVA+NLLDRLEDC+K+FPTA CLGGSL AV+RLLRGRGGIEKLIMMDTSY
Sbjct: 72  SRQKNDSFVDAVADNLLDRLEDCKKSFPTAFCLGGSLGAVKRLLRGRGGIEKLIMMDTSY 131

Query: 126 DMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVS 185
           DM+K C+DAQ D+ +++IET + VGDEEFLP+KESS+DL IS LGLHWTNDLPG+MIQ  
Sbjct: 132 DMIKSCRDAQDDSLDNSIETSYFVGDEEFLPVKESSVDLIISSLGLHWTNDLPGSMIQCK 191

Query: 186 IFLLPD 191
           + L PD
Sbjct: 192 LALKPD 197

Arabidopsis thaliana (taxid: 3702)

>sp|Q5TEU4|NDUF5_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 OS=Homo sapiens GN=NDUFAF5 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 85/164 (51%), Gaps = 21/164 (12%)

Query: 39  ETTSNGSSR-------VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCR 89
           E TS  S R       ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  
Sbjct: 28  EVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAARQPEPTKFDYLKEEVGSRIADRVYDIP 87

Query: 90  KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDT--SYDMLKLCKDAQQDAHNDNIETCF 147
           + FP AL LG           GRG I + +  +T   +    + ++A +++    I T  
Sbjct: 88  RNFPLALDLGC----------GRGYIAQYLNKETIGKFFQADIAENALKNSSETEIPTVS 137

Query: 148 VVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191
           V+ DEEFLP KE++ DL +S L LHW NDLP A+ Q+   L PD
Sbjct: 138 VLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKPD 181

Putative methyltransferase involved in mitochondrial complex I assembly at early stages.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5RBS1|NDUF5_PONAB NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 OS=Pongo abelii GN=NDUFAF5 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 14/148 (9%)

Query: 48  VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAV 105
           ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + FP AL LG      
Sbjct: 44  LNIFDRDLKRKQKNWAAQQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGC----- 98

Query: 106 RRLLRGRGGIEKLIMMDT--SYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLD 163
                GRG I + +  +T   +    + ++A +++    I T  V+ DEEFLP +E++ D
Sbjct: 99  -----GRGYIAQYLNKETIGKFFQADIAENALKNSLETEIPTVSVLADEEFLPFRENTFD 153

Query: 164 LAISCLGLHWTNDLPGAMIQVSIFLLPD 191
           L +S L LHW NDLP A+ Q+   L PD
Sbjct: 154 LVVSSLSLHWVNDLPRALEQIHYILKPD 181

Putative methyltransferase involved in mitochondrial complex I assembly at early stages.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A3KP37|NDUF5_DANRE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 OS=Danio rerio GN=ndufaf5 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 10/146 (6%)

Query: 48  VSIFDRHLKRKQRDRAAWL--TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAV 105
           +++FDR +KR+Q+D A+ L  +   D   + V   + DR+ D  +TFP AL +G     +
Sbjct: 24  MNVFDRSMKRRQKDWASSLLDSSKYDYLREEVGSRVADRVYDVARTFPLALDVGCGRSHI 83

Query: 106 RRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLA 165
              L  +  +E+L + D S   L+       +    +I    V+ DEEFLP KE++ DL 
Sbjct: 84  AEHL-SKEVVERLFLTDISSSSLR-------NRKTSDIPAQCVMADEEFLPFKENTFDLV 135

Query: 166 ISCLGLHWTNDLPGAMIQVSIFLLPD 191
           +S L +HW NDLPGA+ Q+   L PD
Sbjct: 136 LSSLSMHWINDLPGALRQIHQVLKPD 161

Putative methyltransferase involved in mitochondrial complex I assembly at early stages.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A2APY7|NDUF5_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 OS=Mus musculus GN=Ndufaf5 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 15/161 (9%)

Query: 36  NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
           +G   + + S R ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct: 31  SGVPPSGSTSPRALNIFDRELKRKQKNWAARQPDPMKFDYLKEEVGSRIADRVYDIARDF 90

Query: 93  PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLK--LCKDAQQDAHNDNIETCFVVG 150
           P AL +G           GRG I + +  +T   + +  + + A +++   +I T  ++ 
Sbjct: 91  PLALDIGC----------GRGYIAQHLDKETVGKIFQTDIAEHALKNSLETDIPTVNILA 140

Query: 151 DEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191
           DEEFLP +E++ DL +S L LHW NDLP A+ Q+   L PD
Sbjct: 141 DEEFLPFQENTFDLVVSSLSLHWVNDLPRALEQIHYVLKPD 181

Putative methyltransferase involved in mitochondrial complex I assembly at early stages.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B2GV71|NDUF5_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 OS=Rattus norvegicus GN=Ndufaf5 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 14/148 (9%)

Query: 48  VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAV 105
           ++IFDR LKRKQ++ AA    P   D   + +   + DR+ D  + FP AL +G      
Sbjct: 44  LNIFDRELKRKQKNWAARQPEPMKFDYLKEEIGSRIADRVYDIARDFPLALDIGC----- 98

Query: 106 RRLLRGRGGIEKLIMMDTSYDMLK--LCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLD 163
                GRG I + +  +T   + +  + + A +++   +I T  ++ DEEFLP  E++ D
Sbjct: 99  -----GRGYIAQHLNKETVGKIFQTDIAEHALKNSIETDIPTVNILADEEFLPFPENTFD 153

Query: 164 LAISCLGLHWTNDLPGAMIQVSIFLLPD 191
           L +S L LHW NDLP A+ Q+   L PD
Sbjct: 154 LVVSSLSLHWVNDLPRALEQIHYVLKPD 181

Putative methyltransferase involved in mitochondrial complex I assembly at early stages.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q54JW0|NDUF5_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 OS=Dictyostelium discoideum GN=ndufaf5 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 84/159 (52%), Gaps = 13/159 (8%)

Query: 46  SRVSIFDRHLKRKQRDRAAWLT---RPNDSFVDAVAENLLDRLEDCRKTF-PTALCLGGS 101
           ++++IFD ++K  Q++         +  D  ++ VA+ L DR+ D +       L  G  
Sbjct: 29  TKMTIFDTNVKTIQKNNTVTNVDDPKHYDYLMNEVADRLADRILDIKDIKCGNVLDFGSR 88

Query: 102 LEAVRRLLRGRGG-IEKLIMMDTSYDML-----KLCKDAQQDAHNDNIE-TCFVVG--DE 152
             A+ + ++ +G  I+K  M+++S ++L      + ++ + D +N+ ++ T  +V   ++
Sbjct: 89  NGALFKYIQEKGAKIDKYYMVESSKELLYRDDNNVSQENEDDNNNNKVKPTKILVNSLED 148

Query: 153 EFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191
           +   +++ SLDL IS L LHW NDLPG    +   L P+
Sbjct: 149 KIEGIEDQSLDLIISNLSLHWVNDLPGVFGGLKRLLKPN 187

Probable methyltransferase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B2IAI0|BIOC_XYLF2 Malonyl-CoA O-methyltransferase BioC OS=Xylella fastidiosa (strain M23) GN=bioC PE=3 SV=1

 Score = 43.5 bits (101), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 5/130 (3%)

Query: 50  IFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALC-LGGSLEAVRRL 108
           +FD +  R+   RAA     N      V + LL+ L+      P  +  +G         
Sbjct: 4   LFDTYHIRRAFSRAAHSYDTNAVLQHEVEQRLLESLDYLGDRIPRVILDVGAGTGRASIA 63

Query: 109 LRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC 168
           ++ R    ++I +D +  ML+   +A++ +H  N     + GD   LP+ ++S+D+  S 
Sbjct: 64  MKKRWPKAQVIALDQAMPMLQ---EARKRSHWWN-PLALIYGDARTLPVADASVDVIFSN 119

Query: 169 LGLHWTNDLP 178
           L L W  DLP
Sbjct: 120 LCLQWIEDLP 129

Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.

Xylella fastidiosa (strain M23) (taxid: 405441)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
225460187	339	PREDICTED: uncharacterized protein At1g2	0.900	0.507	0.748	2e-69
297741046	348	unnamed protein product [Vitis vinifera]	0.900	0.494	0.748	2e-69
255574259	336	conserved hypothetical protein [Ricinus	0.869	0.494	0.742	6e-68
297845308	355	hypothetical protein ARALYDRAFT_889792 [	0.931	0.501	0.661	6e-62
15219953	355	S-adenosyl-L-methionine-dependent methyl	0.931	0.501	0.650	7e-61
449518625	343	PREDICTED: putative methyltransferase At	0.916	0.510	0.650	8e-57
223975545	343	unknown [Zea mays] gi|413916686|gb|AFW56	0.863	0.481	0.650	3e-55
357455545	335	Sam-dependent methyltransferase [Medicag	0.916	0.522	0.601	3e-55
226529312	343	uncharacterized protein LOC100276173 [Ze	0.853	0.475	0.652	1e-54
413916685	181	hypothetical protein ZEAMMB73_760336 [Ze	0.837	0.883	0.652	8e-54

>gi|225460187|ref|XP_002279511.1| PREDICTED: uncharacterized protein At1g22800 [Vitis vinifera]

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 131/175 (74%), Positives = 142/175 (81%), Gaps = 3/175 (1%)

Query: 17  RRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDA 76
           RR   EP++    GS  TDNG       SSRV IFDRHLKRKQRDRAAWL  P D  VD 
Sbjct: 10  RRRVQEPFSRFFYGSLSTDNG---DGFQSSRVKIFDRHLKRKQRDRAAWLACPKDPLVDT 66

Query: 77  VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ 136
           VAENLLDRLEDC+K FPTALCLGGSLEA+RRLLRGRG IEKLIMMDTSYDM+KLC+DA+Q
Sbjct: 67  VAENLLDRLEDCKKAFPTALCLGGSLEAIRRLLRGRGAIEKLIMMDTSYDMVKLCRDAEQ 126

Query: 137 DAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191
           D  N++IET FVVGDEEFLP+KESSLDL ISCLGLHWTNDLPGAMIQ  + L PD
Sbjct: 127 DVPNESIETSFVVGDEEFLPIKESSLDLVISCLGLHWTNDLPGAMIQCRLALKPD 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741046|emb|CBI31358.3| unnamed protein product [Vitis vinifera]

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 131/175 (74%), Positives = 142/175 (81%), Gaps = 3/175 (1%)

Query: 17  RRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDA 76
           RR   EP++    GS  TDNG       SSRV IFDRHLKRKQRDRAAWL  P D  VD 
Sbjct: 19  RRRVQEPFSRFFYGSLSTDNG---DGFQSSRVKIFDRHLKRKQRDRAAWLACPKDPLVDT 75

Query: 77  VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ 136
           VAENLLDRLEDC+K FPTALCLGGSLEA+RRLLRGRG IEKLIMMDTSYDM+KLC+DA+Q
Sbjct: 76  VAENLLDRLEDCKKAFPTALCLGGSLEAIRRLLRGRGAIEKLIMMDTSYDMVKLCRDAEQ 135

Query: 137 DAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191
           D  N++IET FVVGDEEFLP+KESSLDL ISCLGLHWTNDLPGAMIQ  + L PD
Sbjct: 136 DVPNESIETSFVVGDEEFLPIKESSLDLVISCLGLHWTNDLPGAMIQCRLALKPD 190

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574259|ref|XP_002528044.1| conserved hypothetical protein [Ricinus communis] gi|223532574|gb|EEF34362.1| conserved hypothetical protein [Ricinus communis]

 Score =  262 bits (669), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 130/175 (74%), Positives = 143/175 (81%), Gaps = 9/175 (5%)

Query: 17  RRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDA 76
           RRA    YA   S S+CT+         +SRV IFDRHLKR QRDRAAWL RPNDSFV+A
Sbjct: 13  RRAYEPIYAFFQSTSYCTE--------ANSRVKIFDRHLKRVQRDRAAWLMRPNDSFVNA 64

Query: 77  VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ 136
           VA+NLLDRLEDC+KTFP+AL LGGSL+A+RR LRGRG IEKLIMMDTSYDM+KLCKDA  
Sbjct: 65  VADNLLDRLEDCKKTFPSALFLGGSLDAIRRSLRGRGSIEKLIMMDTSYDMIKLCKDAHY 124

Query: 137 DAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191
           DA N+NIET FVVGDEEFLP+KESSLDL ISCLGLHWTNDLPGAMIQ  + L PD
Sbjct: 125 DA-NENIETSFVVGDEEFLPVKESSLDLVISCLGLHWTNDLPGAMIQCKLALKPD 178

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845308|ref|XP_002890535.1| hypothetical protein ARALYDRAFT_889792 [Arabidopsis lyrata subsp. lyrata] gi|297336377|gb|EFH66794.1| hypothetical protein ARALYDRAFT_889792 [Arabidopsis lyrata subsp. lyrata]

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 123/186 (66%), Positives = 147/186 (79%), Gaps = 8/186 (4%)

Query: 13  LLRR--RRANNEPYALVPSGSFCTDNGF----ETTSNGSSRVSIFDRHLKRKQRDRAAWL 66
           +LRR    +  + + L+ S SF T+  +    E   N SS+V IFDR LKR  RDRAAWL
Sbjct: 13  MLRRVPEESTKKSHTLLASLSFSTEGSYGGDGELQQN-SSKVKIFDRDLKRIHRDRAAWL 71

Query: 67  TR-PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY 125
           +R  NDSFVDAVAENLLDRLEDC+K+FPTA CLGGSL AV+RLLRGRGGIEKLIMMDTSY
Sbjct: 72  SRQKNDSFVDAVAENLLDRLEDCKKSFPTAFCLGGSLGAVKRLLRGRGGIEKLIMMDTSY 131

Query: 126 DMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVS 185
           DM+K C+DAQ+D+ +++IET + VGDEEFLP+KESS+DL IS LGLHWTNDLPG+MIQ  
Sbjct: 132 DMIKSCRDAQEDSLDNSIETSYFVGDEEFLPVKESSVDLIISSLGLHWTNDLPGSMIQCK 191

Query: 186 IFLLPD 191
           + L PD
Sbjct: 192 LALKPD 197

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219953|ref|NP_173694.1| S-adenosyl-L-methionine-dependent methyltransferases-like protein [Arabidopsis thaliana] gi|84028281|sp|O80543.2|Y1280_ARATH RecName: Full=Putative methyltransferase At1g22800 gi|30102638|gb|AAP21237.1| At1g22800 [Arabidopsis thaliana] gi|110736002|dbj|BAE99975.1| hypothetical protein [Arabidopsis thaliana] gi|332192169|gb|AEE30290.1| S-adenosyl-L-methionine-dependent methyltransferases-like protein [Arabidopsis thaliana]

 Score =  238 bits (608), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 121/186 (65%), Positives = 146/186 (78%), Gaps = 8/186 (4%)

Query: 13  LLRR--RRANNEPYALVPSGSFCTDNGF----ETTSNGSSRVSIFDRHLKRKQRDRAAWL 66
           LL+R   ++  + +  + S SF T+  +    E   N SS+V IFDR LKR  RDRAAWL
Sbjct: 13  LLKRVPEKSTKQAHTFLASLSFSTEGAYGGDGEFQQN-SSKVKIFDRDLKRIHRDRAAWL 71

Query: 67  TR-PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY 125
           +R  NDSFVDAVA+NLLDRLEDC+K+FPTA CLGGSL AV+RLLRGRGGIEKLIMMDTSY
Sbjct: 72  SRQKNDSFVDAVADNLLDRLEDCKKSFPTAFCLGGSLGAVKRLLRGRGGIEKLIMMDTSY 131

Query: 126 DMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVS 185
           DM+K C+DAQ D+ +++IET + VGDEEFLP+KESS+DL IS LGLHWTNDLPG+MIQ  
Sbjct: 132 DMIKSCRDAQDDSLDNSIETSYFVGDEEFLPVKESSVDLIISSLGLHWTNDLPGSMIQCK 191

Query: 186 IFLLPD 191
           + L PD
Sbjct: 192 LALKPD 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518625|ref|XP_004166337.1| PREDICTED: putative methyltransferase At1g22800-like [Cucumis sativus]

 Score =  225 bits (573), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 119/183 (65%), Positives = 138/183 (75%), Gaps = 8/183 (4%)

Query: 9   RSSLLLRRRRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTR 68
           RS  LLR  R  + P +++   SFCT +      N   R+S   +  K K RDRAAWL R
Sbjct: 11  RSFSLLRSTRWRDSPNSIL-CCSFCTGD-----DNYDGRISDGMQSSKVK-RDRAAWLMR 63

Query: 69  PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDML 128
           P DS VD+VAENLLDRLEDC+KTFPTALCLGGSLEA+RRLLRGRG +EKLIMMD S+DM+
Sbjct: 64  PKDSLVDSVAENLLDRLEDCKKTFPTALCLGGSLEAIRRLLRGRGSVEKLIMMDASHDMI 123

Query: 129 KLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFL 188
           KLCKD    AH  ++ET FVVGDEEFLP+KESS+DL ISCLGLHWTNDLPGAMIQ  + +
Sbjct: 124 KLCKD-DTGAHVQDVETSFVVGDEEFLPIKESSVDLVISCLGLHWTNDLPGAMIQSRLAM 182

Query: 189 LPD 191
            PD
Sbjct: 183 KPD 185

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223975545|gb|ACN31960.1| unknown [Zea mays] gi|413916686|gb|AFW56618.1| hypothetical protein ZEAMMB73_760336 [Zea mays]

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 108/166 (65%), Positives = 127/166 (76%), Gaps = 1/166 (0%)

Query: 26  LVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRL 85
           L+P   F + +  +   +G  RV IFDR LKR+ RDRAAW+ R  D  VDAVAENLLDRL
Sbjct: 20  LLPKRHFSSSSAPDGLDDGGGRVKIFDRDLKRRHRDRAAWVMRETDGLVDAVAENLLDRL 79

Query: 86  EDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET 145
           EDCRK FP+ALCLGGS  AVRRLLRGRGGIE+LIMMD S DM+K  +++ ++A  D  ET
Sbjct: 80  EDCRKAFPSALCLGGSAGAVRRLLRGRGGIERLIMMDMSADMVKKWRES-ENATGDGPET 138

Query: 146 CFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191
            FV+GDEEFLP+KESS DL +SCLGLHWTNDLPGAMIQ  + L PD
Sbjct: 139 HFVIGDEEFLPIKESSQDLIMSCLGLHWTNDLPGAMIQCRLALQPD 184

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455545|ref|XP_003598053.1| Sam-dependent methyltransferase [Medicago truncatula] gi|355487101|gb|AES68304.1| Sam-dependent methyltransferase [Medicago truncatula]

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 110/183 (60%), Positives = 133/183 (72%), Gaps = 8/183 (4%)

Query: 9   RSSLLLRRRRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTR 68
           R +L    RR    P+       F     F TTS  +S+++IFDR LKR QRDRAAWL  
Sbjct: 3   RGALFSLFRRKTKPPFC------FSAPLFFFTTS--TSKLNIFDRQLKRNQRDRAAWLMP 54

Query: 69  PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDML 128
             D  +  VA NLLDRL+DC+KTFP+ALCLGGSL+AV R +RG GGIEKLI+MD S+DM+
Sbjct: 55  QTDPLLHTVAHNLLDRLQDCKKTFPSALCLGGSLQAVTRSIRGHGGIEKLIVMDASHDMV 114

Query: 129 KLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFL 188
           + CK+    ++N+NIET FVVGDEEFLP+KESS+DL ISCLGLHWTNDLPGAMIQ  + L
Sbjct: 115 QRCKNDYHASNNENIETTFVVGDEEFLPIKESSVDLVISCLGLHWTNDLPGAMIQSMLAL 174

Query: 189 LPD 191
            PD
Sbjct: 175 KPD 177

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226529312|ref|NP_001143495.1| uncharacterized protein LOC100276173 [Zea mays] gi|195621470|gb|ACG32565.1| hypothetical protein [Zea mays]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 107/164 (65%), Positives = 124/164 (75%), Gaps = 1/164 (0%)

Query: 28  PSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLED 87
           P   F + +  +   +G  RV IFDR LKR+ RDRAAW  R  D  VDAVAENLLDRLED
Sbjct: 22  PKRHFSSSSAPDGLDDGGGRVKIFDRDLKRRHRDRAAWAMRETDGLVDAVAENLLDRLED 81

Query: 88  CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCF 147
           CRK FP+ALCLGGS  AVRRLLRGRGGIE+LIMMD S DM+K  +++ ++A  D  ET F
Sbjct: 82  CRKAFPSALCLGGSAGAVRRLLRGRGGIERLIMMDMSADMVKKWRES-ENATGDGPETHF 140

Query: 148 VVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191
           V+GDEEFLP+KESS DL +SCLGLHWTNDLPGAMIQ  + L PD
Sbjct: 141 VIGDEEFLPIKESSQDLIMSCLGLHWTNDLPGAMIQCRLALQPD 184

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413916685|gb|AFW56617.1| hypothetical protein ZEAMMB73_760336 [Zea mays]

 Score =  215 bits (547), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 105/161 (65%), Positives = 124/161 (77%), Gaps = 1/161 (0%)

Query: 26  LVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRL 85
           L+P   F + +  +   +G  RV IFDR LKR+ RDRAAW+ R  D  VDAVAENLLDRL
Sbjct: 20  LLPKRHFSSSSAPDGLDDGGGRVKIFDRDLKRRHRDRAAWVMRETDGLVDAVAENLLDRL 79

Query: 86  EDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET 145
           EDCRK FP+ALCLGGS  AVRRLLRGRGGIE+LIMMD S DM+K  +++ ++A  D  ET
Sbjct: 80  EDCRKAFPSALCLGGSAGAVRRLLRGRGGIERLIMMDMSADMVKKWRES-ENATGDGPET 138

Query: 146 CFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSI 186
            FV+GDEEFLP+KESS DL +SCLGLHWTNDLPGAMIQ  +
Sbjct: 139 HFVIGDEEFLPIKESSQDLIMSCLGLHWTNDLPGAMIQAGV 179

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
TAIR|locus:2199650	355	AT1G22800 [Arabidopsis thalian	0.900	0.484	0.662	4.6e-57
UNIPROTKB|F1NUD7	305	F1NUD7 "Uncharacterized protei	0.706	0.442	0.406	3.1e-19
UNIPROTKB|E1C306	346	E1C306 "Uncharacterized protei	0.706	0.390	0.406	3.2e-19
UNIPROTKB|B3KR61	267	NDUFAF5 "HCG1811060, isoform C	0.764	0.546	0.366	8.3e-19
UNIPROTKB|Q5TEU4	345	NDUFAF5 "NADH dehydrogenase [u	0.764	0.423	0.366	9.5e-19
UNIPROTKB|Q5RBS1	345	NDUFAF5 "NADH dehydrogenase [u	0.764	0.423	0.360	2.9e-18
ZFIN|ZDB-GENE-070410-110	322	ndufaf5 "NADH dehydrogenase (u	0.727	0.431	0.377	3.6e-18
UNIPROTKB|F1SBJ3	345	NDUFAF5 "Uncharacterized prote	0.764	0.423	0.354	7.4e-17
UNIPROTKB|F1MQP4	345	C13H20orf7 "Uncharacterized pr	0.764	0.423	0.347	1.3e-16
UNIPROTKB|E2RF12	345	NDUFAF5 "Uncharacterized prote	0.764	0.423	0.354	1.3e-16

TAIR|locus:2199650 AT1G22800 [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 118/178 (66%), Positives = 141/178 (79%)

Query:    19 ANNEPYALVPSGSFCTDNGF----ETTSNGSSRVSIFDRHLKRKQRDRAAWLTRP-NDSF 73
             +  + +  + S SF T+  +    E   N SS+V IFDR LKR  RDRAAWL+R  NDSF
Sbjct:    21 STKQAHTFLASLSFSTEGAYGGDGEFQQN-SSKVKIFDRDLKRIHRDRAAWLSRQKNDSF 79

Query:    74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133
             VDAVA+NLLDRLEDC+K+FPTA CLGGSL AV+RLLRGRGGIEKLIMMDTSYDM+K C+D
Sbjct:    80 VDAVADNLLDRLEDCKKSFPTAFCLGGSLGAVKRLLRGRGGIEKLIMMDTSYDMIKSCRD 139

Query:   134 AQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191
             AQ D+ +++IET + VGDEEFLP+KESS+DL IS LGLHWTNDLPG+MIQ  + L PD
Sbjct:   140 AQDDSLDNSIETSYFVGDEEFLPVKESSVDLIISSLGLHWTNDLPGSMIQCKLALKPD 197

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

UNIPROTKB|F1NUD7 F1NUD7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 59/145 (40%), Positives = 82/145 (56%)

Query:    49 SIFDRHLKRKQRDRAAWLTRPND-SFV-DAVAENLLDRLEDCRKTFPTALCLGGSLEAVR 106
             S FDR LKRKQ++ AA   RP +  ++ D V   + DR+ D  +TFP AL LG     + 
Sbjct:     9 SPFDRRLKRKQKNWAALRPRPAECEYLRDEVGSGVADRVLDIPRTFPLALDLGSGRGYIA 68

Query:   107 RLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAI 166
             R L  +  IEKL+ +D + ++ K   +++       I T  VV DEE LP KE++ DL +
Sbjct:    69 RHLN-QEVIEKLVQVDIAENVFKSTAESE-------IPTVSVVADEECLPFKENTFDLVV 120

Query:   167 SCLGLHWTNDLPGAMIQVSIFLLPD 191
             S L LHW NDLP A  ++   L PD
Sbjct:   121 SSLSLHWVNDLPKAFREIHQVLKPD 145

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E1C306 E1C306 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 230 (86.0 bits), Expect = 3.2e-19, P = 3.2e-19
 Identities = 59/145 (40%), Positives = 82/145 (56%)

Query:    49 SIFDRHLKRKQRDRAAWLTRPND-SFV-DAVAENLLDRLEDCRKTFPTALCLGGSLEAVR 106
             S FDR LKRKQ++ AA   RP +  ++ D V   + DR+ D  +TFP AL LG     + 
Sbjct:    46 SPFDRRLKRKQKNWAALRPRPAECEYLRDEVGSGVADRVLDIPRTFPLALDLGSGRGYIA 105

Query:   107 RLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAI 166
             R L  +  IEKL+ +D + ++ K   +++       I T  VV DEE LP KE++ DL +
Sbjct:   106 RHLN-QEVIEKLVQVDIAENVFKSTAESE-------IPTVSVVADEECLPFKENTFDLVV 157

Query:   167 SCLGLHWTNDLPGAMIQVSIFLLPD 191
             S L LHW NDLP A  ++   L PD
Sbjct:   158 SSLSLHWVNDLPKAFREIHQVLKPD 182

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

UNIPROTKB|B3KR61 NDUFAF5 "HCG1811060, isoform CRA_c" [Homo sapiens (taxid:9606)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 59/161 (36%), Positives = 85/161 (52%)

Query:    36 NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
             +G     + S R ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct:    31 SGVSPRGSTSPRTLNIFDRDLKRKQKNWAARQPEPTKFDYLKEEVGSRIADRVYDIPRNF 90

Query:    93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDT--SYDMLKLCKDAQQDAHNDNIETCFVVG 150
             P AL LG           GRG I + +  +T   +    + ++A +++    I T  V+ 
Sbjct:    91 PLALDLGC----------GRGYIAQYLNKETIGKFFQADIAENALKNSSETEIPTVSVLA 140

Query:   151 DEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191
             DEEFLP KE++ DL +S L LHW NDLP A+ Q+   L PD
Sbjct:   141 DEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKPD 181

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q5TEU4 NDUFAF5 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5" [Homo sapiens (taxid:9606)]

 Score = 226 (84.6 bits), Expect = 9.5e-19, P = 9.5e-19
 Identities = 59/161 (36%), Positives = 85/161 (52%)

Query:    36 NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
             +G     + S R ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct:    31 SGVSPRGSTSPRTLNIFDRDLKRKQKNWAARQPEPTKFDYLKEEVGSRIADRVYDIPRNF 90

Query:    93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDT--SYDMLKLCKDAQQDAHNDNIETCFVVG 150
             P AL LG           GRG I + +  +T   +    + ++A +++    I T  V+ 
Sbjct:    91 PLALDLGC----------GRGYIAQYLNKETIGKFFQADIAENALKNSSETEIPTVSVLA 140

Query:   151 DEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191
             DEEFLP KE++ DL +S L LHW NDLP A+ Q+   L PD
Sbjct:   141 DEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKPD 181

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IDA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5RBS1 NDUFAF5 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5" [Pongo abelii (taxid:9601)]

 Score = 222 (83.2 bits), Expect = 2.9e-18, P = 2.9e-18
 Identities = 58/161 (36%), Positives = 85/161 (52%)

Query:    36 NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
             +G     + S R ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct:    31 SGVSPRGSTSPRTLNIFDRDLKRKQKNWAAQQPEPTKFDYLKEEVGSRIADRVYDIPRNF 90

Query:    93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDT--SYDMLKLCKDAQQDAHNDNIETCFVVG 150
             P AL LG           GRG I + +  +T   +    + ++A +++    I T  V+ 
Sbjct:    91 PLALDLGC----------GRGYIAQYLNKETIGKFFQADIAENALKNSLETEIPTVSVLA 140

Query:   151 DEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191
             DEEFLP +E++ DL +S L LHW NDLP A+ Q+   L PD
Sbjct:   141 DEEFLPFRENTFDLVVSSLSLHWVNDLPRALEQIHYILKPD 181

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

ZFIN|ZDB-GENE-070410-110 ndufaf5 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 5" [Danio rerio (taxid:7955)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 57/151 (37%), Positives = 84/151 (55%)

Query:    45 SSR--VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTFPTALCLGG 100
             SSR  +++FDR +KR+Q+D A+ L   +  D   + V   + DR+ D  +TFP AL +G 
Sbjct:    20 SSRQGMNVFDRSMKRRQKDWASSLLDSSKYDYLREEVGSRVADRVYDVARTFPLALDVGC 79

Query:   101 SLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKES 160
                 +   L  +  +E+L + D S   L+  K +   A       C V+ DEEFLP KE+
Sbjct:    80 GRSHIAEHL-SKEVVERLFLTDISSSSLRNRKKSDIPAQ------C-VMADEEFLPFKEN 131

Query:   161 SLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191
             + DL +S L +HW NDLPGA+ Q+   L PD
Sbjct:   132 TFDLVLSSLSMHWINDLPGALRQIHQVLKPD 162

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|F1SBJ3 NDUFAF5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 210 (79.0 bits), Expect = 7.4e-17, P = 7.4e-17
 Identities = 57/161 (35%), Positives = 84/161 (52%)

Query:    36 NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
             +G  +  + S R ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct:    31 SGVSSRGSTSPRALNIFDRDLKRKQKNWAARQPEPMKFDYLKEEVGSRIADRVYDITRDF 90

Query:    93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDT--SYDMLKLCKDAQQDAHNDNIETCFVVG 150
             P AL +G           GRG I + +  +T   +    + + A ++     I T  V+ 
Sbjct:    91 PLALDVGC----------GRGYIAQHLNKETVGKFFQTDIAEHALKNTLEMEIPTVSVLA 140

Query:   151 DEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191
             DEEFLP +E++ DL +S L LHW NDLP A+ Q+   L PD
Sbjct:   141 DEEFLPFRENTFDLVVSSLSLHWVNDLPRALEQIHYVLKPD 181

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|F1MQP4 C13H20orf7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 208 (78.3 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 56/161 (34%), Positives = 84/161 (52%)

Query:    36 NGFETTSNGSSRV-SIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
             +G  + S  S +  +IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct:    31 SGASSPSGASPKAFNIFDRDLKRKQKNWAARQPEPMKFDYLKEEVGSRIADRVYDIARDF 90

Query:    93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDT--SYDMLKLCKDAQQDAHNDNIETCFVVG 150
               AL +G           GRG + + +  +T   +    + ++A ++A    I T  V+ 
Sbjct:    91 RLALDVGC----------GRGYVAEHLNKETVGKFFQTDIAENALKNALETEIPTVSVLA 140

Query:   151 DEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191
             DEEFLP +E++ DL +S L LHW NDLP A+ Q+   L PD
Sbjct:   141 DEEFLPFRENTFDLVVSSLSLHWVNDLPRALEQIHYVLKPD 181

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E2RF12 NDUFAF5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 208 (78.3 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 57/161 (35%), Positives = 84/161 (52%)

Query:    36 NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
             +G     + S R ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct:    31 SGVSPPGSTSPRALNIFDRDLKRKQKNWAARQPEPMRFDYLKEEVGSQIADRVYDITRNF 90

Query:    93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDT--SYDMLKLCKDAQQDAHNDNIETCFVVG 150
               AL +G           GRG I + +  +T   +  + + ++A ++     I T  V+ 
Sbjct:    91 SLALDVGC----------GRGYIAQHLNKETVGKFFQVDIAENALKNTLEMEIPTVSVLA 140

Query:   151 DEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191
             DEEFLP KE++ DL +S L LHW NDLP A+ Q+   L PD
Sbjct:   141 DEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYVLKPD 181

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00021858001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (339 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00001917001	SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (381 aa)	•						•		0.681
	GSVIVG00020877001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (483 aa)			•	•			•		0.551
	GSVIVG00028617001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (318 aa)			•	•			•		0.520
	GSVIVG00014042001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (158 aa)			•				•		0.513
	GSVIVG00022315001	RecName- Full=NADH-ubiquinone oxidoreductase 75 kDa subunit; EC=1.6.5.3; (746 aa)			•	•			•		0.486
	GSVIVG00033231001	SubName- Full=Chromosome chr9 scaffold_65, whole genome shotgun sequence; (459 aa)	•						•		0.450
	GSVIVG00036386001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (223 aa)			•	•			•		0.438
	GSVIVG00018975001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (172 aa)			•				•		0.426
	nad9	SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence;; Core subunit [...] (190 aa)			•	•			•		0.424
	GSVIVG00013749001	SubName- Full=Chromosome undetermined scaffold_540, whole genome shotgun sequence; (94 aa)					•				0.401

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	191
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	5e-10
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	2e-05
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	3e-05
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	3e-05
PRK10258	251	PRK10258, PRK10258, biotin biosynthesis protein Bi	1e-04

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 56.5 bits (137), Expect = 5e-10
 Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 7/105 (6%)

Query: 77  VAENLLDRLEDCRKTFPTA-LCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135
           +A+ LL  L++     P + L +G     + R L  R    + I  D S  ML   K   
Sbjct: 19  MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKL 78

Query: 136 QDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGA 180
               ++N++  F+ GD E LPL++SS DL +S L L W +DL  A
Sbjct: 79  ----SENVQ--FICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQA 117

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 104 AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLD 163
            +   L  RGG   +  +D S +ML L +           +  FVVGD E LP  + S D
Sbjct: 9   LLAEALARRGGAR-VTGVDLSPEMLALAR------KRAPRK--FVVGDAEDLPFPDESFD 59

Query: 164 LAISCLGLHWTNDLPGAM 181
           + +S L LH   D   A+
Sbjct: 60  VVVSSLVLHHLPDPERAL 77

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 107 RLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAI 166
            LL    G  +++ +D S  ML++ ++  +     N+E  FVVGD E LP  ++S D   
Sbjct: 67  LLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVE--FVVGDAENLPFPDNSFDAVT 124

Query: 167 SCLGLHWTND 176
              GL    D
Sbjct: 125 ISFGLRNVTD 134

Length = 238

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 94  TALCLG-GSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD- 151
             L LG G+      L  G G   ++  +D S   L+L + A      DN+E   + GD 
Sbjct: 1   RVLDLGCGTGALALALASGPGA--RVTGVDISPVALELARKAAAALLADNVE--VLKGDA 56

Query: 152 EEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLL 189
           EE  P  + S D+ IS   LH   +     ++ +  LL
Sbjct: 57  EELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLL 94

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 11/120 (9%)

Query: 62  RAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMM 121
           RAA     +       A+ LL  L   ++ F   L  G     + R  R RG   ++  +
Sbjct: 15  RAAAHYEQHAELQRQSADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRERGS--QVTAL 70

Query: 122 DTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAM 181
           D S  ML   +  +  A +      ++ GD E LPL  ++ DLA S L + W  +L  A+
Sbjct: 71  DLSPPMLAQARQ-KDAADH------YLAGDIESLPLATATFDLAWSNLAVQWCGNLSTAL 123

Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.93
KOG2940	325	consensus Predicted methyltransferase [General fun	99.9
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.9
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.9
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.87
PRK05785	226	hypothetical protein; Provisional	99.85
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.83
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.81
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.81
PLN02244	340	tocopherol O-methyltransferase	99.8
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.8
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.79
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.79
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.78
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.78
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.77
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.76
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.75
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.74
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.74
PRK11207	197	tellurite resistance protein TehB; Provisional	99.73
PLN02490	340	MPBQ/MSBQ methyltransferase	99.73
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.72
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.71
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.71
KOG4300	252	consensus Predicted methyltransferase [General fun	99.71
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.69
PLN02336	475	phosphoethanolamine N-methyltransferase	99.69
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.69
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.69
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.69
PRK06202	232	hypothetical protein; Provisional	99.68
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.68
PRK08317	241	hypothetical protein; Provisional	99.68
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.67
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.67
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.67
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.67
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.67
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.64
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.64
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.64
PRK12335	287	tellurite resistance protein TehB; Provisional	99.64
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.62
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.61
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.61
PRK06922	677	hypothetical protein; Provisional	99.61
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.59
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.59
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.58
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.58
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.58
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.58
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.57
PLN02336	475	phosphoethanolamine N-methyltransferase	99.57
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.55
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.55
KOG3010	261	consensus Methyltransferase [General function pred	99.55
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.55
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.54
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.54
PLN03075	296	nicotianamine synthase; Provisional	99.52
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.52
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.52
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.51
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.51
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.51
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.5
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.5
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.49
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.49
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.48
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.47
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.47
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.47
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.46
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.46
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.44
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.42
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.42
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.41
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.41
TIGR03438	301	probable methyltransferase. This model represents	99.39
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.39
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.37
PRK07402	196	precorrin-6B methylase; Provisional	99.36
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.35
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.34
PRK14967	223	putative methyltransferase; Provisional	99.34
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.34
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.33
PRK14968	188	putative methyltransferase; Provisional	99.33
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.32
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.32
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.32
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.31
PRK04266	226	fibrillarin; Provisional	99.31
KOG1271	227	consensus Methyltransferases [General function pre	99.3
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.3
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.3
PTZ00146	293	fibrillarin; Provisional	99.26
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.25
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.24
PRK00811	283	spermidine synthase; Provisional	99.24
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.24
COG4123	248	Predicted O-methyltransferase [General function pr	99.23
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.23
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.22
PHA03411	279	putative methyltransferase; Provisional	99.22
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.21
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.2
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.2
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.19
PRK04457	262	spermidine synthase; Provisional	99.19
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.18
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.17
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.16
TIGR00438	188	rrmJ cell division protein FtsJ.	99.15
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.15
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.15
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.14
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.13
KOG2361	264	consensus Predicted methyltransferase [General fun	99.12
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.1
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.07
COG2890	280	HemK Methylase of polypeptide chain release factor	99.07
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.07
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.07
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.07
PHA03412	241	putative methyltransferase; Provisional	99.05
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.05
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.04
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.04
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.04
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.03
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.03
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.03
PRK01581	374	speE spermidine synthase; Validated	99.02
PLN02366	308	spermidine synthase	99.01
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.0
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.0
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.0
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.99
PRK03612	521	spermidine synthase; Provisional	98.99
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.99
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.97
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.96
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.94
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.92
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.91
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.9
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.88
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.88
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.85
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.85
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.84
PRK04148	134	hypothetical protein; Provisional	98.83
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.83
COG4122	219	Predicted O-methyltransferase [General function pr	98.82
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.81
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.78
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.78
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.78
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.77
PLN02672	1082	methionine S-methyltransferase	98.77
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.74
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.73
KOG2899	288	consensus Predicted methyltransferase [General fun	98.73
KOG2904	328	consensus Predicted methyltransferase [General fun	98.71
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.71
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.7
PLN02476	278	O-methyltransferase	98.69
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.68
KOG1331	293	consensus Predicted methyltransferase [General fun	98.68
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.67
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.66
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.65
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.62
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.62
PLN02823	336	spermine synthase	98.61
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.61
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.58
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.49
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.48
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.45
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.45
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.45
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.45
PRK00536	262	speE spermidine synthase; Provisional	98.41
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.41
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.39
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.38
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.38
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.34
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.34
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.31
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.29
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.27
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.27
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.25
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.24
PF13679	141	Methyltransf_32: Methyltransferase domain	98.23
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.23
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.19
COG2521	287	Predicted archaeal methyltransferase [General func	98.19
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.18
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.11
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.11
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.09
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.09
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.08
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.08
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.07
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.06
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.05
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.0
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.99
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.97
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.94
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.89
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.86
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.86
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.84
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.81
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	97.72
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.72
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.68
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.68
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.67
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.65
COG2520	341	Predicted methyltransferase [General function pred	97.65
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.64
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.6
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.58
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.56
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.55
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.48
COG4076	252	Predicted RNA methylase [General function predicti	97.45
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.42
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.4
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.38
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.37
PRK10742	250	putative methyltransferase; Provisional	97.28
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.15
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.11
KOG2730	263	consensus Methylase [General function prediction o	97.05
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	97.03
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.01
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.97
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.86
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.82
COG3897	218	Predicted methyltransferase [General function pred	96.81
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	96.78
KOG3115	249	consensus Methyltransferase-like protein [General	96.61
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.55
PLN02668	386	indole-3-acetate carboxyl methyltransferase	96.52
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.46
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.24
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	96.24
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.22
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.04
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.9
COG4798	238	Predicted methyltransferase [General function pred	95.85
COG1565	370	Uncharacterized conserved protein [Function unknow	95.66
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	95.65
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.53
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	95.43
COG4301	321	Uncharacterized conserved protein [Function unknow	95.38
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.3
KOG4058	199	consensus Uncharacterized conserved protein [Funct	95.23
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.16
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	94.83
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	94.81
PRK11524	284	putative methyltransferase; Provisional	94.73
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	94.69
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	94.67
KOG1501	636	consensus Arginine N-methyltransferase [General fu	94.65
PHA01634	156	hypothetical protein	94.55
COG0286	489	HsdM Type I restriction-modification system methyl	94.33
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	94.31
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	94.27
COG3129	292	Predicted SAM-dependent methyltransferase [General	94.23
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	94.09
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	93.83
PTZ00357	1072	methyltransferase; Provisional	93.77
KOG2920	282	consensus Predicted methyltransferase [General fun	93.6
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	93.57
PRK13699	227	putative methylase; Provisional	93.47
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	93.28
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	93.13
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	92.81
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	92.67
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	92.39
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	91.89
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	91.61
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	91.25
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	90.97
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	90.59
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	90.15
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	89.93
KOG3924	419	consensus Putative protein methyltransferase invol	88.19
KOG1227	351	consensus Putative methyltransferase [General func	87.28
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	87.16
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	86.45
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	86.4
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	86.32
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	86.25
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	85.94
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	85.84
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	84.97
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	84.91
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	84.84
COG2933	358	Predicted SAM-dependent methyltransferase [General	83.96
COG1255	129	Uncharacterized protein conserved in archaea [Func	83.64
PRK08339	263	short chain dehydrogenase; Provisional	83.44
KOG2671	421	consensus Putative RNA methylase [Replication, rec	83.42
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	83.22
KOG2078	495	consensus tRNA modification enzyme [RNA processing	83.12
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	82.66
PRK05867	253	short chain dehydrogenase; Provisional	82.31
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	82.2
PRK07417	279	arogenate dehydrogenase; Reviewed	82.18
KOG2811	420	consensus Uncharacterized conserved protein [Funct	81.57
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	81.41
KOG2782	303	consensus Putative SAM dependent methyltransferase	81.32
COG0300	265	DltE Short-chain dehydrogenases of various substra	80.49
PRK05854	313	short chain dehydrogenase; Provisional	80.45
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	80.44
PRK06194	287	hypothetical protein; Provisional	80.36

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.93  E-value=8.5e-25  Score=169.03  Aligned_cols=136  Identities=22%  Similarity=0.248  Sum_probs=117.7

Q ss_pred             CHHHHHHHHHHhhhhcCCCc-----hHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChh
Q 029554           52 DRHLKRKQRDRAAWLTRPND-----SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYD  126 (191)
Q Consensus        52 d~~~~~~~~~~~a~~y~~~~-----~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~  126 (191)
                      ....+...|++.+..||..+     -.+....+.++..+.  ..++.+|||||||||.++..+++..+..+|+++|+|+.
T Consensus         9 k~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~   86 (238)
T COG2226           9 KQEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLG--IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISES   86 (238)
T ss_pred             cHHHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHH
Confidence            45677888999999998865     245556666776665  33789999999999999999998877889999999999


Q ss_pred             HHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          127 MLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       127 ~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |++.++++...  ....++.++++|++.+||++++||+|.++++|++++|++.+|+|+.||||||
T Consensus        87 ML~~a~~k~~~--~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg  149 (238)
T COG2226          87 MLEVAREKLKK--KGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPG  149 (238)
T ss_pred             HHHHHHHHhhc--cCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCC
Confidence            99999999865  2233499999999999999999999999999999999999999999999997

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=99.90  E-value=2.4e-24  Score=162.56  Aligned_cols=160  Identities=58%  Similarity=0.957  Sum_probs=138.8

Q ss_pred             HhhcCCCceeccCCccccCCCccccCCCCCCccccCHHHHHHHHHHhhhhcCC-CchHHHHHHHHHHHHHHhcccCCCeE
Q 029554           17 RRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRP-NDSFVDAVAENLLDRLEDCRKTFPTA   95 (191)
Q Consensus        17 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~y~~-~~~~~~~~~~~l~~~l~~~~~~~~~V   95 (191)
                      +.+++...+.+.+.++.|+          +...+||+++++.+++|+++..|. .++++++++.++.+++.++++..+.+
T Consensus         7 ~~st~~~~~~l~sls~~t~----------s~~~iFDR~~KR~qrdrAa~~~d~k~dylkeeig~rlaDrvfD~kk~fp~a   76 (325)
T KOG2940|consen    7 EKSTKQAHTFLASLSFSTE----------SKVKIFDRDLKRIQRDRAAWLSDQKNDYLKEEIGDRLADRVFDCKKSFPTA   76 (325)
T ss_pred             hhhHHHHHHHHHHhhccch----------hhhHhhhhHHHHHHHhHHhhcchhhhhHHHHHHHHHHHHHHHHHhhhCcce
Confidence            3344444455667777663          446899999999999999987665 58999999999999999999999999


Q ss_pred             EEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcC
Q 029554           96 LCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTN  175 (191)
Q Consensus        96 LDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~  175 (191)
                      +|||||.|++...|...+ ..+++.+|.|..|++.|+...    .....+...++|.+.++|.++++|+|++++++||++
T Consensus        77 ~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~q----dp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~N  151 (325)
T KOG2940|consen   77 FDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQ----DPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTN  151 (325)
T ss_pred             eecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccC----CCceEEEEEecchhcccccccchhhhhhhhhhhhhc
Confidence            999999999999998876 789999999999999997653    234567888899999999999999999999999999


Q ss_pred             ChHHHHHHHHhccCCC
Q 029554          176 DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       176 d~~~~l~~i~r~Lkpg  191 (191)
                      |++..+.++...||||
T Consensus       152 dLPg~m~~ck~~lKPD  167 (325)
T KOG2940|consen  152 DLPGSMIQCKLALKPD  167 (325)
T ss_pred             cCchHHHHHHHhcCCC
Confidence            9999999999999996

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.90  E-value=1.4e-23  Score=163.19  Aligned_cols=135  Identities=24%  Similarity=0.239  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHhhhhcCCCchH-----HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChh
Q 029554           53 RHLKRKQRDRAAWLTRPNDSF-----VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYD  126 (191)
Q Consensus        53 ~~~~~~~~~~~a~~y~~~~~~-----~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~  126 (191)
                      .+.+...|++.+..||..+.+     ...+...+++.+.  ..++.+|||+|||||.++..+++. ++..+|+++|+|++
T Consensus         6 ~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~   83 (233)
T PF01209_consen    6 EQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPG   83 (233)
T ss_dssp             -------------------------------SHHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HH
T ss_pred             HHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHH
Confidence            445667788888888875332     2223334444443  457789999999999999998876 45679999999999


Q ss_pred             HHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          127 MLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       127 ~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |++.++++...  ....++.++++|.+.+|+++++||+|++.+++++++|+...++|+.|+||||
T Consensus        84 ML~~a~~k~~~--~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPG  146 (233)
T PF01209_consen   84 MLEVARKKLKR--EGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPG  146 (233)
T ss_dssp             HHHHHHHHHHH--TT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHHh--hCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCC
Confidence            99999998865  3344899999999999999999999999999999999999999999999996

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.90  E-value=7.8e-23  Score=161.02  Aligned_cols=131  Identities=25%  Similarity=0.364  Sum_probs=116.8

Q ss_pred             ccCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHH
Q 029554           50 IFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLK  129 (191)
Q Consensus        50 ~~d~~~~~~~~~~~a~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~  129 (191)
                      ..|+..+...|++++..|+....++..++..+++.+.  ..+..+|||+|||+|.++..+...+  .+|+++|+|+.|++
T Consensus         3 ~~~k~~i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~   78 (251)
T PRK10258          3 TVNKQAIAAAFGRAAAHYEQHAELQRQSADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLA   78 (251)
T ss_pred             ccCHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHH
Confidence            3578889999999999999998899999999988886  3456789999999999999998866  89999999999999


Q ss_pred             HHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          130 LCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       130 ~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .++++...       ..++++|++.+|+++++||+|+++.++||++|+..++.++.++|+||
T Consensus        79 ~a~~~~~~-------~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~g  133 (251)
T PRK10258         79 QARQKDAA-------DHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPG  133 (251)
T ss_pred             HHHhhCCC-------CCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCC
Confidence            99876431       46788999999988899999999999999999999999999999996

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.87  E-value=4.3e-21  Score=151.95  Aligned_cols=138  Identities=18%  Similarity=0.146  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHhhhhcCCCchHH----HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhH
Q 029554           53 RHLKRKQRDRAAWLTRPNDSFV----DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDM  127 (191)
Q Consensus        53 ~~~~~~~~~~~a~~y~~~~~~~----~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~  127 (191)
                      .+.+...|++.+..||......    .....++...... ..++.+|||+|||+|.++..+.+. ++..+|+|+|+|++|
T Consensus        32 ~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~m  110 (261)
T PLN02233         32 ANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSG-AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQ  110 (261)
T ss_pred             HHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHH
Confidence            5568889999999999743221    2222222222222 346779999999999999988875 345799999999999


Q ss_pred             HHHHHHhhhhc-cCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          128 LKLCKDAQQDA-HNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       128 l~~a~~~~~~~-~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++.|+++.... .....++.++++|++.+|+++++||+|++++++||++|+..+++++.|+||||
T Consensus       111 l~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpG  175 (261)
T PLN02233        111 LAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPG  175 (261)
T ss_pred             HHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcC
Confidence            99998765310 11234689999999999999999999999999999999999999999999997

>PRK05785 hypothetical protein; Provisional

Probab=99.85  E-value=1.2e-20  Score=146.37  Aligned_cols=127  Identities=15%  Similarity=0.140  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHhhhhcCCCchH-----HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhH
Q 029554           53 RHLKRKQRDRAAWLTRPNDSF-----VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDM  127 (191)
Q Consensus        53 ~~~~~~~~~~~a~~y~~~~~~-----~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~  127 (191)
                      ...+...|++.+..||....+     .......++..+.....++.+|||+|||||.++..+.+.+ ..+|+|+|+|++|
T Consensus         8 ~~~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~M   86 (226)
T PRK05785          8 WEELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENM   86 (226)
T ss_pred             HHHHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHH
Confidence            455667788888888764211     1122333444443212346799999999999999998874 3699999999999


Q ss_pred             HHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCC
Q 029554          128 LKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       128 l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                      ++.++++.          .++++|++.+|+++++||+|++++++||++|+..+++++.|+|||
T Consensus        87 l~~a~~~~----------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp  139 (226)
T PRK05785         87 LKMNLVAD----------DKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRK  139 (226)
T ss_pred             HHHHHhcc----------ceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcC
Confidence            99987642          346789999999999999999999999999999999999999997

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.83  E-value=2e-19  Score=139.84  Aligned_cols=135  Identities=16%  Similarity=0.121  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHhhhhcCCCchH-----HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChh
Q 029554           53 RHLKRKQRDRAAWLTRPNDSF-----VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYD  126 (191)
Q Consensus        53 ~~~~~~~~~~~a~~y~~~~~~-----~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~  126 (191)
                      +..+...|++.+..||.....     .......++..+.  ..++.+|||+|||+|.++..+++.. +..+|+++|+|+.
T Consensus         4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~   81 (231)
T TIGR02752         4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSEN   81 (231)
T ss_pred             HHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHH
Confidence            456778888999888874331     2222344554443  3467799999999999999998763 5579999999999


Q ss_pred             HHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          127 MLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       127 ~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++.++++...  ....++.++.+|.+.+++++++||+|+++++++|++++..++.++.++|+||
T Consensus        82 ~~~~a~~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~g  144 (231)
T TIGR02752        82 MLSVGRQKVKD--AGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPG  144 (231)
T ss_pred             HHHHHHHHHHh--cCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcC
Confidence            99999988754  2335688999999888888889999999999999999999999999999997

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.81  E-value=8.6e-20  Score=144.09  Aligned_cols=104  Identities=18%  Similarity=0.199  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l  155 (191)
                      .....+++.+.  ..++.+|||+|||+|.++..+...+|..+|+|+|+|+.|++.++++         ++.++++|++.+
T Consensus        16 ~~~~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~   84 (255)
T PRK14103         16 RPFYDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDW   84 (255)
T ss_pred             CHHHHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhC
Confidence            33445666655  3467899999999999999999887778999999999999998653         267888998877


Q ss_pred             CCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          156 PLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       156 ~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      + ++++||+|+|+.++||++|+..+++++.++||||
T Consensus        85 ~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg  119 (255)
T PRK14103         85 K-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPG  119 (255)
T ss_pred             C-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCC
Confidence            5 5679999999999999999999999999999997

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.81  E-value=1.1e-19  Score=121.49  Aligned_cols=90  Identities=27%  Similarity=0.337  Sum_probs=78.4

Q ss_pred             EEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcC
Q 029554           96 LCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTN  175 (191)
Q Consensus        96 LDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~  175 (191)
                      ||+|||+|..+..+.+. +..+|+++|+|+.+++.++++...     ..+.+...|.+.+|+++++||+|+++.++||++
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~-----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~   74 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN-----EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE   74 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT-----STEEEEESBTTSSSS-TT-EEEEEEESHGGGSS
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc-----cCchheeehHHhCccccccccccccccceeecc
Confidence            89999999999999998 459999999999999999987642     335589999999999999999999999999999


Q ss_pred             ChHHHHHHHHhccCCC
Q 029554          176 DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       176 d~~~~l~~i~r~Lkpg  191 (191)
                      ++..+++++.|+||||
T Consensus        75 ~~~~~l~e~~rvLk~g   90 (95)
T PF08241_consen   75 DPEAALREIYRVLKPG   90 (95)
T ss_dssp             HHHHHHHHHHHHEEEE
T ss_pred             CHHHHHHHHHHHcCcC
Confidence            9999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02244 tocopherol O-methyltransferase

Probab=99.80  E-value=3.1e-18  Score=140.42  Aligned_cols=100  Identities=14%  Similarity=0.063  Sum_probs=88.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||||||+|.++..|++.+ ..+|+|+|+|+.|++.++++... .....++.++++|...+|+++++||+|++..
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~-~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~  194 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAA-QGLSDKVSFQVADALNQPFEDGQFDLVWSME  194 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEEcCcccCCCCCCCccEEEECC
Confidence            456799999999999999998864 37999999999999999887654 1223468999999999999999999999999


Q ss_pred             cccCcCChHHHHHHHHhccCCC
Q 029554          170 GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++|+.|...+++++.++||||
T Consensus       195 ~~~h~~d~~~~l~e~~rvLkpG  216 (340)
T PLN02244        195 SGEHMPDKRKFVQELARVAAPG  216 (340)
T ss_pred             chhccCCHHHHHHHHHHHcCCC
Confidence            9999999999999999999997

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.80  E-value=6.9e-19  Score=136.83  Aligned_cols=126  Identities=29%  Similarity=0.371  Sum_probs=106.8

Q ss_pred             HHHhhhhcCCCchHHHHHHHHHHHHHHhcc-cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhc
Q 029554           60 RDRAAWLTRPNDSFVDAVAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA  138 (191)
Q Consensus        60 ~~~~a~~y~~~~~~~~~~~~~l~~~l~~~~-~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~  138 (191)
                      |++++..|+.....+..++..+++.+.... ..+.+|||+|||+|.++..+.+.++..+++++|+|+.+++.++++..  
T Consensus         2 ~~~~~~~y~~~~~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--   79 (240)
T TIGR02072         2 FNKAAKTYDRHAKIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--   79 (240)
T ss_pred             cchhhhchhHHHHHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--
Confidence            345666677666778888888888877532 34468999999999999999988877889999999999999887652  


Q ss_pred             cCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          139 HNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       139 ~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                          .++.++.+|++..++++++||+|+++.++||+.|+..++.++.++|+||
T Consensus        80 ----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~  128 (240)
T TIGR02072        80 ----ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPG  128 (240)
T ss_pred             ----CCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCC
Confidence                2578899999988888899999999999999999999999999999996

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.79  E-value=4.7e-19  Score=139.98  Aligned_cols=110  Identities=22%  Similarity=0.221  Sum_probs=92.0

Q ss_pred             hHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC
Q 029554           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD  151 (191)
Q Consensus        72 ~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d  151 (191)
                      ..+......++..+.  ..++.+|||+|||+|.++..++...+..+|+++|+|+.|++.++++..       ++.+..+|
T Consensus        14 ~~~~~~~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-------~~~~~~~d   84 (258)
T PRK01683         14 DERTRPARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-------DCQFVEAD   84 (258)
T ss_pred             HHhhcHHHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-------CCeEEECc
Confidence            344445666776665  346789999999999999999988777899999999999999987653       37788899


Q ss_pred             CCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          152 EEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       152 ~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +..+. ++++||+|+++.++||++|...+++++.++||||
T Consensus        85 ~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg  123 (258)
T PRK01683         85 IASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPG  123 (258)
T ss_pred             hhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCC
Confidence            87665 4468999999999999999999999999999997

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.79  E-value=4.3e-18  Score=130.61  Aligned_cols=137  Identities=16%  Similarity=0.154  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHhhhhcCCCch-----HHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCC------ceEEEE
Q 029554           53 RHLKRKQRDRAAWLTRPNDS-----FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGI------EKLIMM  121 (191)
Q Consensus        53 ~~~~~~~~~~~a~~y~~~~~-----~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~------~~v~~v  121 (191)
                      ...+..-|.+.+..||...-     .++.+-+..+..+.  +..+.++||++||||.++..+.+..+.      .+|+++
T Consensus        59 e~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~--p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~  136 (296)
T KOG1540|consen   59 ERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLG--PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVL  136 (296)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccC--CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEE
Confidence            34556677888877776322     12223334444444  446679999999999999988765433      789999


Q ss_pred             ECChhHHHHHHHhhhhccC-CCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          122 DTSYDMLKLCKDAQQDAHN-DNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       122 D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |+|+.|++.++++..+..- ....+.++++|.|.+||++.+||..++.+++..+.|++..++|+.||||||
T Consensus       137 Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpG  207 (296)
T KOG1540|consen  137 DINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPG  207 (296)
T ss_pred             eCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCC
Confidence            9999999999998854211 123489999999999999999999999999999999999999999999997

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.78  E-value=4.3e-18  Score=138.01  Aligned_cols=98  Identities=11%  Similarity=0.055  Sum_probs=85.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ++.+|||||||+|.++..|+..+  .+|+|+|+|+.|++.++++... .....++.++++|++.+++++++||+|++..+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g--~~V~GID~s~~~i~~Ar~~~~~-~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v  207 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMG--ATVTGVDAVDKNVKIARLHADM-DPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV  207 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHh-cCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence            45689999999999999998866  8999999999999999877542 11224688999999988888889999999999


Q ss_pred             ccCcCChHHHHHHHHhccCCC
Q 029554          171 LHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++|+.|+..+++++.++||||
T Consensus       208 LeHv~d~~~~L~~l~r~LkPG  228 (322)
T PLN02396        208 IEHVANPAEFCKSLSALTIPN  228 (322)
T ss_pred             HHhcCCHHHHHHHHHHHcCCC
Confidence            999999999999999999997

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.78  E-value=1.8e-19  Score=135.13  Aligned_cols=105  Identities=23%  Similarity=0.224  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~  156 (191)
                      -+..|+.+++  ..+..+|.|+|||+|..+..|.+++|...++|+|.|+.|++.|+++..       +++|..+|+..+.
T Consensus        18 Pa~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp-------~~~f~~aDl~~w~   88 (257)
T COG4106          18 PARDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP-------DATFEEADLRTWK   88 (257)
T ss_pred             cHHHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC-------CCceecccHhhcC
Confidence            3456777776  446778999999999999999999999999999999999999977654       3899999998886


Q ss_pred             CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          157 LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                       ++.++|++++|.+|||++|-...|.++...|.||
T Consensus        89 -p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pg  122 (257)
T COG4106          89 -PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPG  122 (257)
T ss_pred             -CCCccchhhhhhhhhhccccHHHHHHHHHhhCCC
Confidence             4578999999999999999999999999999997

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.77  E-value=6e-18  Score=133.59  Aligned_cols=100  Identities=20%  Similarity=0.219  Sum_probs=85.9

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-CCCCCcceEEe
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKESSLDLAIS  167 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-~~~~~fDlVis  167 (191)
                      ...+.+|||+|||+|..+..+++.+  .+|+++|+|+.|++.|+++.... ....++.++++|+..++ +.+++||+|++
T Consensus        42 ~~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~-g~~~~v~~~~~d~~~l~~~~~~~fD~V~~  118 (255)
T PRK11036         42 PPRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAK-GVSDNMQFIHCAAQDIAQHLETPVDLILF  118 (255)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc-CCccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence            3456799999999999999999887  89999999999999999887541 12346888999977653 56689999999


Q ss_pred             CCcccCcCChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +.+++|+.|+..++.++.++||||
T Consensus       119 ~~vl~~~~~~~~~l~~~~~~Lkpg  142 (255)
T PRK11036        119 HAVLEWVADPKSVLQTLWSVLRPG  142 (255)
T ss_pred             hhHHHhhCCHHHHHHHHHHHcCCC
Confidence            999999999999999999999997

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.76  E-value=4.6e-18  Score=124.16  Aligned_cols=98  Identities=26%  Similarity=0.240  Sum_probs=85.6

Q ss_pred             CCCeEEEEcCCccHHHHHHh-hcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLR-GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~-~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlVis  167 (191)
                      ...+|||+|||+|.++..++ ..++..+++|+|+|+.|++.+++.+..  ....++.+.++|+..++  ++ +.||+|++
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~--~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~   79 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE--LGLDNIEFIQGDIEDLPQELE-EKFDIIIS   79 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH--TTSTTEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc--ccccccceEEeehhccccccC-CCeeEEEE
Confidence            45689999999999999999 556778999999999999999998765  33447999999988877  55 78999999


Q ss_pred             CCcccCcCChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +.+++|+.++..+++++.++|+||
T Consensus        80 ~~~l~~~~~~~~~l~~~~~~lk~~  103 (152)
T PF13847_consen   80 NGVLHHFPDPEKVLKNIIRLLKPG  103 (152)
T ss_dssp             ESTGGGTSHHHHHHHHHHHHEEEE
T ss_pred             cCchhhccCHHHHHHHHHHHcCCC
Confidence            999999999999999999999874

...

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.75  E-value=2.1e-18  Score=131.88  Aligned_cols=97  Identities=13%  Similarity=0.077  Sum_probs=86.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||.|.++..+++.|  .+|+|+|+|+.+++.|+.+..+   ....+.+.+...+++....++||+|+|..
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e---~gv~i~y~~~~~edl~~~~~~FDvV~cmE  132 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALE---SGVNIDYRQATVEDLASAGGQFDVVTCME  132 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhh---ccccccchhhhHHHHHhcCCCccEEEEhh
Confidence            378899999999999999999998  9999999999999999988764   34446677777777765568999999999


Q ss_pred             cccCcCChHHHHHHHHhccCCC
Q 029554          170 GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +|+|++|+..+++.+.+.+|||
T Consensus       133 VlEHv~dp~~~~~~c~~lvkP~  154 (243)
T COG2227         133 VLEHVPDPESFLRACAKLVKPG  154 (243)
T ss_pred             HHHccCCHHHHHHHHHHHcCCC
Confidence            9999999999999999999997

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.74  E-value=4.6e-17  Score=127.99  Aligned_cols=99  Identities=17%  Similarity=0.188  Sum_probs=82.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHhh--cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEe
Q 029554           90 KTFPTALCLGGSLEAVRRLLRG--RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAIS  167 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~--~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis  167 (191)
                      .++.+|||+|||+|..+..+..  ..|..+++++|+|+.|++.++++.... ....++.++++|+..++++  .+|+|++
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~-~~~~~v~~~~~d~~~~~~~--~~D~vv~  131 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-KAPTPVDVIEGDIRDIAIE--NASMVVL  131 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence            3667999999999999988876  346689999999999999999988641 1234689999998888754  4999999


Q ss_pred             CCcccCcCC--hHHHHHHHHhccCCC
Q 029554          168 CLGLHWTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d--~~~~l~~i~r~Lkpg  191 (191)
                      ++++||+++  ...+++++.++||||
T Consensus       132 ~~~l~~l~~~~~~~~l~~i~~~LkpG  157 (247)
T PRK15451        132 NFTLQFLEPSERQALLDKIYQGLNPG  157 (247)
T ss_pred             hhHHHhCCHHHHHHHHHHHHHhcCCC
Confidence            999999964  467999999999997

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.74  E-value=9.5e-19  Score=118.69  Aligned_cols=94  Identities=20%  Similarity=0.133  Sum_probs=63.0

Q ss_pred             EEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-C-CCCCCcceEEeCCcccC
Q 029554           96 LCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-P-LKESSLDLAISCLGLHW  173 (191)
Q Consensus        96 LDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~-~~~~~fDlVis~~~l~~  173 (191)
                      ||+|||+|.++..+.+.++..+|+++|+|+.|++.++++....  ..........+.... . ...++||+|+++.++||
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~   78 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL--GNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH   78 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC--T---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc--CCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence            7999999999999998877899999999999999888887652  222233333332221 1 12268999999999999


Q ss_pred             cCChHHHHHHHHhccCCC
Q 029554          174 TNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       174 ~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++++..+++++.++|+||
T Consensus        79 l~~~~~~l~~~~~~L~pg   96 (99)
T PF08242_consen   79 LEDIEAVLRNIYRLLKPG   96 (99)
T ss_dssp             -S-HHHHHHHHTTT-TSS
T ss_pred             hhhHHHHHHHHHHHcCCC
Confidence            999999999999999997

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.73  E-value=3.4e-17  Score=124.59  Aligned_cols=96  Identities=16%  Similarity=0.126  Sum_probs=82.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ++.+|||+|||+|.++..|++.+  .+|+++|+|+.|++.+++....  ....++.+.+.|+..++++ ++||+|+++.+
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g--~~V~gvD~S~~~i~~a~~~~~~--~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~  104 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANG--FDVTAWDKNPMSIANLERIKAA--ENLDNLHTAVVDLNNLTFD-GEYDFILSTVV  104 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHH--cCCCcceEEecChhhCCcC-CCcCEEEEecc
Confidence            56799999999999999999876  7999999999999999887754  2334578888898877764 67999999999


Q ss_pred             ccCcC--ChHHHHHHHHhccCCC
Q 029554          171 LHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      +||++  +...++.++.++|+||
T Consensus       105 ~~~~~~~~~~~~l~~i~~~Lkpg  127 (197)
T PRK11207        105 LMFLEAKTIPGLIANMQRCTKPG  127 (197)
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCC
Confidence            99885  5788999999999997

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.73  E-value=2.1e-17  Score=134.61  Aligned_cols=97  Identities=16%  Similarity=0.123  Sum_probs=85.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..+.+..+..+|+++|+|+.|++.++++..     ..++.++.+|++.+++++++||+|+++.
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-----~~~i~~i~gD~e~lp~~~~sFDvVIs~~  186 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECKIIEGDAEDLPFPTDYADRYVSAG  186 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-----ccCCeEEeccHHhCCCCCCceeEEEEcC
Confidence            45679999999999999888776555799999999999999988653     2347889999999998889999999999


Q ss_pred             cccCcCChHHHHHHHHhccCCC
Q 029554          170 GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++|++|+..+++++.++||||
T Consensus       187 ~L~~~~d~~~~L~e~~rvLkPG  208 (340)
T PLN02490        187 SIEYWPDPQRGIKEAYRVLKIG  208 (340)
T ss_pred             hhhhCCCHHHHHHHHHHhcCCC
Confidence            9999999999999999999997

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.72  E-value=1.2e-17  Score=113.73  Aligned_cols=94  Identities=29%  Similarity=0.390  Sum_probs=77.2

Q ss_pred             EEEEcCCccHHHHHHhhcC---CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC-c
Q 029554           95 ALCLGGSLEAVRRLLRGRG---GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL-G  170 (191)
Q Consensus        95 VLDlGcG~G~~~~~l~~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~-~  170 (191)
                      |||+|||+|..+..+.+.+   +..+++++|+|+.|++.++++...   ...++++++.|+..+++.+++||+|+++. +
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~---~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~   77 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE---DGPKVRFVQADARDLPFSDGKFDLVVCSGLS   77 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH---TTTTSEEEESCTTCHHHHSSSEEEEEE-TTG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh---cCCceEEEECCHhHCcccCCCeeEEEEcCCc
Confidence            7999999999999998764   448999999999999999998864   33378999999999988888999999954 4


Q ss_pred             ccCcC--ChHHHHHHHHhccCCC
Q 029554          171 LHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      ++|+.  +...+++++.++|+||
T Consensus        78 ~~~~~~~~~~~ll~~~~~~l~pg  100 (101)
T PF13649_consen   78 LHHLSPEELEALLRRIARLLRPG  100 (101)
T ss_dssp             GGGSSHHHHHHHHHHHHHTEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCC
Confidence            99986  4568999999999986

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.71  E-value=9.3e-17  Score=127.34  Aligned_cols=107  Identities=16%  Similarity=0.161  Sum_probs=89.6

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~  157 (191)
                      ...++..+.  ..++.+|||||||+|..+..++... ..+|+++|+|+.|++.++++...    ..++.+.+.|+...++
T Consensus        41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~----~~~i~~~~~D~~~~~~  113 (263)
T PTZ00098         41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD----KNKIEFEANDILKKDF  113 (263)
T ss_pred             HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc----CCceEEEECCcccCCC
Confidence            345555543  4577899999999999998887654 36899999999999999887632    3468899999988888


Q ss_pred             CCCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          158 KESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      ++++||+|++..+++|++  ++..+++++.++||||
T Consensus       114 ~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG  149 (263)
T PTZ00098        114 PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN  149 (263)
T ss_pred             CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC
Confidence            889999999999988875  8899999999999997

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.71  E-value=2.7e-17  Score=113.69  Aligned_cols=99  Identities=19%  Similarity=0.193  Sum_probs=81.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC-CCCCCCCCCcceEEeCC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFLPLKESSLDLAISCL  169 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~~fDlVis~~  169 (191)
                      |+.+|||+|||+|.++..+++..+..+++++|+|+.|++.++++... .....++.+++.|+ ..... .+.||+|++..
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~   78 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE-EGLSDRITFVQGDAEFDPDF-LEPFDLVICSG   78 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH-TTTTTTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEECccccCccc-CCCCCEEEECC
Confidence            46789999999999999999855569999999999999999998843 24567899999999 33333 35699999999


Q ss_pred             -cccCc---CChHHHHHHHHhccCCC
Q 029554          170 -GLHWT---NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 -~l~~~---~d~~~~l~~i~r~Lkpg  191 (191)
                       ++++.   ++...+++++.+.|+||
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~L~pg  104 (112)
T PF12847_consen   79 FTLHFLLPLDERRRVLERIRRLLKPG  104 (112)
T ss_dssp             GSGGGCCHHHHHHHHHHHHHHHEEEE
T ss_pred             CccccccchhHHHHHHHHHHHhcCCC
Confidence             55543   35678899999999986

...

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.71  E-value=1.4e-16  Score=118.77  Aligned_cols=100  Identities=22%  Similarity=0.269  Sum_probs=87.4

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCcee-eEecCCCCCC-CCCCCcceEE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC-FVVGDEEFLP-LKESSLDLAI  166 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~-~~~~d~~~l~-~~~~~fDlVi  166 (191)
                      +.....|||||||||.+-..+.. -|..+|+++|+++.|-+.+.+++.+  +...++. |++++.+.+| +++++||.||
T Consensus        74 k~~K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E--~k~~~~~~fvva~ge~l~~l~d~s~DtVV  150 (252)
T KOG4300|consen   74 KSGKGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAE--KKPLQVERFVVADGENLPQLADGSYDTVV  150 (252)
T ss_pred             ccCccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhh--ccCcceEEEEeechhcCcccccCCeeeEE
Confidence            33455789999999999887753 3568999999999999999998876  4566666 8899999988 8899999999


Q ss_pred             eCCcccCcCChHHHHHHHHhccCCC
Q 029554          167 SCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +.++|..+.|+...|.++.|+|+||
T Consensus       151 ~TlvLCSve~~~k~L~e~~rlLRpg  175 (252)
T KOG4300|consen  151 CTLVLCSVEDPVKQLNEVRRLLRPG  175 (252)
T ss_pred             EEEEEeccCCHHHHHHHHHHhcCCC
Confidence            9999999999999999999999997

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.69  E-value=2.3e-16  Score=119.90  Aligned_cols=104  Identities=13%  Similarity=0.102  Sum_probs=83.0

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE  159 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~  159 (191)
                      .+++.+.  ..++.+|||+|||+|.++..+++.+  .+|+++|+|+.|++.++++...   ...++.+...|....+++ 
T Consensus        21 ~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~s~~~l~~a~~~~~~---~~~~v~~~~~d~~~~~~~-   92 (195)
T TIGR00477        21 AVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAG--YDVRAWDHNPASIASVLDMKAR---ENLPLRTDAYDINAAALN-   92 (195)
T ss_pred             HHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHH---hCCCceeEeccchhcccc-
Confidence            3444444  2346799999999999999999876  7999999999999999887653   222366777787666654 


Q ss_pred             CCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          160 SSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       160 ~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      ++||+|+++.++||++  +...+++++.++|+||
T Consensus        93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  126 (195)
T TIGR00477        93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPG  126 (195)
T ss_pred             CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence            5799999999999884  5678999999999997

Part of a tellurite-reducing operon tehA and tehB

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.69  E-value=2.8e-16  Score=134.22  Aligned_cols=107  Identities=17%  Similarity=0.175  Sum_probs=90.3

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK  158 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~  158 (191)
                      ..+++.+.  ..++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++...   ...++.+.++|+...+++
T Consensus       256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~---~~~~v~~~~~d~~~~~~~  329 (475)
T PLN02336        256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIG---RKCSVEFEVADCTKKTYP  329 (475)
T ss_pred             HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhc---CCCceEEEEcCcccCCCC
Confidence            34555544  3456799999999999998888764 46899999999999999877642   334688999999888888


Q ss_pred             CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++||+|+|..+++|+.|+..+++++.++||||
T Consensus       330 ~~~fD~I~s~~~l~h~~d~~~~l~~~~r~Lkpg  362 (475)
T PLN02336        330 DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPG  362 (475)
T ss_pred             CCCEEEEEECCcccccCCHHHHHHHHHHHcCCC
Confidence            889999999999999999999999999999997

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.69  E-value=1e-15  Score=119.04  Aligned_cols=137  Identities=20%  Similarity=0.178  Sum_probs=105.5

Q ss_pred             CHHHHHHHHHHhhhhcCCCch-H----HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECCh
Q 029554           52 DRHLKRKQRDRAAWLTRPNDS-F----VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSY  125 (191)
Q Consensus        52 d~~~~~~~~~~~a~~y~~~~~-~----~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~  125 (191)
                      +++.....|+..+..|+.... .    .......++..+.  ..++.+|||+|||+|..+..+...++ ..+++++|+++
T Consensus         9 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~   86 (239)
T PRK00216          9 KQEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE   86 (239)
T ss_pred             chHHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH
Confidence            455567788888877764211 1    2223334444444  23567999999999999999988775 58999999999


Q ss_pred             hHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          126 DMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       126 ~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .+++.++++... .+...++.+...|...++++.++||+|+++.++|++.++...+.++.++|+||
T Consensus        87 ~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~g  151 (239)
T PRK00216         87 GMLAVGREKLRD-LGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPG  151 (239)
T ss_pred             HHHHHHHHhhcc-cccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCC
Confidence            999999887643 11234588888998888777789999999999999999999999999999986

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.69  E-value=3.8e-16  Score=127.06  Aligned_cols=99  Identities=17%  Similarity=0.074  Sum_probs=82.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      ..+.+|||||||+|.++..++..++ ..|+|+|+|+.|+.+++..... .....++.++.+|++.+|+ +++||+|+|..
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~-~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~  197 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKL-LGNDQRAHLLPLGIEQLPA-LKAFDTVFSMG  197 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHh-cCCCCCeEEEeCCHHHCCC-cCCcCEEEECC
Confidence            3567999999999999999988763 4699999999998765443221 0123468899999999987 78899999999


Q ss_pred             cccCcCChHHHHHHHHhccCCC
Q 029554          170 GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++||..|+..+++++.++|+||
T Consensus       198 vl~H~~dp~~~L~~l~~~LkpG  219 (322)
T PRK15068        198 VLYHRRSPLDHLKQLKDQLVPG  219 (322)
T ss_pred             hhhccCCHHHHHHHHHHhcCCC
Confidence            9999999999999999999997

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.69  E-value=4.4e-16  Score=119.01  Aligned_cols=91  Identities=16%  Similarity=0.123  Sum_probs=77.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ++.+|||+|||+|..+..|....+..+++|+|+|+.|++.|+++..       ++.+.++|+.. |+++++||+|+++.+
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-------~~~~~~~d~~~-~~~~~sfD~V~~~~v  114 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-------NINIIQGSLFD-PFKDNFFDLVLTKGV  114 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-------CCcEEEeeccC-CCCCCCEEEEEECCh
Confidence            5668999999999999999887556899999999999999987642       26677888776 788899999999999


Q ss_pred             ccCcC--ChHHHHHHHHhccC
Q 029554          171 LHWTN--DLPGAMIQVSIFLL  189 (191)
Q Consensus       171 l~~~~--d~~~~l~~i~r~Lk  189 (191)
                      ++|++  +...+++++.++++
T Consensus       115 L~hl~p~~~~~~l~el~r~~~  135 (204)
T TIGR03587       115 LIHINPDNLPTAYRELYRCSN  135 (204)
T ss_pred             hhhCCHHHHHHHHHHHHhhcC
Confidence            99985  45778899988875

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK06202 hypothetical protein; Provisional

Probab=99.68  E-value=7e-16  Score=120.16  Aligned_cols=96  Identities=14%  Similarity=0.049  Sum_probs=77.1

Q ss_pred             cCCCeEEEEcCCccHHHHHHhh----cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceE
Q 029554           90 KTFPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLA  165 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~----~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlV  165 (191)
                      .++.+|||+|||+|.++..|..    .++..+|+|+|+|+.|++.++++...     .++.+.+.+.+.++.++++||+|
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~~~~~~~~~l~~~~~~fD~V  133 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-----PGVTFRQAVSDELVAEGERFDVV  133 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-----CCCeEEEEecccccccCCCccEE
Confidence            4567999999999999888764    34456999999999999999876532     23566666666666677899999


Q ss_pred             EeCCcccCcCCh--HHHHHHHHhccCC
Q 029554          166 ISCLGLHWTNDL--PGAMIQVSIFLLP  190 (191)
Q Consensus       166 is~~~l~~~~d~--~~~l~~i~r~Lkp  190 (191)
                      ++++++||++|.  ..+++++.++++.
T Consensus       134 ~~~~~lhh~~d~~~~~~l~~~~r~~~~  160 (232)
T PRK06202        134 TSNHFLHHLDDAEVVRLLADSAALARR  160 (232)
T ss_pred             EECCeeecCChHHHHHHHHHHHHhcCe
Confidence            999999999874  5799999998863

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.68  E-value=4e-16  Score=124.26  Aligned_cols=100  Identities=25%  Similarity=0.254  Sum_probs=86.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      .++.+|||+|||+|..+..++.. ++..+|+++|+|+.|++.++++...  ....++.+..+|++.+++++++||+|+++
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~--~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~  153 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK--AGYTNVEFRLGEIEALPVADNSVDVIISN  153 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH--cCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence            46789999999999987766554 4446899999999999999987754  23346889999999998888899999999


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .+++|.++...+++++.++||||
T Consensus       154 ~v~~~~~d~~~~l~~~~r~LkpG  176 (272)
T PRK11873        154 CVINLSPDKERVFKEAFRVLKPG  176 (272)
T ss_pred             CcccCCCCHHHHHHHHHHHcCCC
Confidence            99999999999999999999997

>PRK08317 hypothetical protein; Provisional

Probab=99.68  E-value=7.6e-16  Score=119.56  Aligned_cols=107  Identities=24%  Similarity=0.237  Sum_probs=90.7

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK  158 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~  158 (191)
                      .+++.+.  ..++.+|||+|||+|.++..++... +..+++++|+|+.+++.++++..   ....++.+...|...++++
T Consensus        10 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~~~   84 (241)
T PRK08317         10 RTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA---GLGPNVEFVRGDADGLPFP   84 (241)
T ss_pred             HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh---CCCCceEEEecccccCCCC
Confidence            4444444  3467799999999999999998775 56899999999999999988732   2345688899998888888


Q ss_pred             CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++||+|++..+++|+.|+..+++++.++|+||
T Consensus        85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g  117 (241)
T PRK08317         85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPG  117 (241)
T ss_pred             CCCceEEEEechhhccCCHHHHHHHHHHHhcCC
Confidence            889999999999999999999999999999997

>TIGR00740 methyltransferase, putative

Probab=99.67  E-value=1e-15  Score=119.70  Aligned_cols=99  Identities=19%  Similarity=0.183  Sum_probs=82.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcC--CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEe
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAIS  167 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~--~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis  167 (191)
                      .+..+|||+|||+|..+..+.+..  |..+++|+|+|+.|++.|+++.... ....++.++++|+..++++  .+|+|++
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~--~~d~v~~  128 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY-HSEIPVEILCNDIRHVEIK--NASMVIL  128 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCeEEEECChhhCCCC--CCCEEee
Confidence            366789999999999999888753  5689999999999999999887541 1234688999999888765  4899999


Q ss_pred             CCcccCcC--ChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      ++++||+.  +...+++++.++|+||
T Consensus       129 ~~~l~~~~~~~~~~~l~~i~~~Lkpg  154 (239)
T TIGR00740       129 NFTLQFLPPEDRIALLTKIYEGLNPN  154 (239)
T ss_pred             ecchhhCCHHHHHHHHHHHHHhcCCC
Confidence            99999986  4578999999999997

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR00452 methyltransferase, putative

Probab=99.67  E-value=9.3e-16  Score=123.94  Aligned_cols=99  Identities=15%  Similarity=0.018  Sum_probs=80.1

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..+...++ ..|+|+|+|+.|+.+++..... .....++.+...+++.++.. .+||+|+|+.
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~-~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~g  196 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKL-LDNDKRAILEPLGIEQLHEL-YAFDTVFSMG  196 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHH-hccCCCeEEEECCHHHCCCC-CCcCEEEEcc
Confidence            4577999999999999888887763 4799999999999875432211 01234577788888888754 5899999999


Q ss_pred             cccCcCChHHHHHHHHhccCCC
Q 029554          170 GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++|..|+..++.+++++||||
T Consensus       197 vL~H~~dp~~~L~el~r~LkpG  218 (314)
T TIGR00452       197 VLYHRKSPLEHLKQLKHQLVIK  218 (314)
T ss_pred             hhhccCCHHHHHHHHHHhcCCC
Confidence            9999999999999999999997

Known examples to date are restricted to the proteobacteria.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.67  E-value=7.2e-17  Score=124.47  Aligned_cols=94  Identities=18%  Similarity=0.139  Sum_probs=79.5

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCC----ceeeEecCCCCCCCCCCCcceEEeC
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI----ETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      .+|||+|||+|.+++.|++.+  ++|+|+|+++.|++.|+++.........    ++.+...+.+.+.   +.||.|+|.
T Consensus        91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs  165 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS  165 (282)
T ss_pred             ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence            579999999999999999988  9999999999999999988433111112    3566667777664   459999999


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .+++|+.|++.++..+.+.||||
T Consensus       166 evleHV~dp~~~l~~l~~~lkP~  188 (282)
T KOG1270|consen  166 EVLEHVKDPQEFLNCLSALLKPN  188 (282)
T ss_pred             HHHHHHhCHHHHHHHHHHHhCCC
Confidence            99999999999999999999996

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.67  E-value=1.8e-16  Score=116.04  Aligned_cols=98  Identities=27%  Similarity=0.244  Sum_probs=76.7

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE  159 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~  159 (191)
                      +++..+.....+..+|||+|||+|.++..+.+.+  .+++++|+|+.+++.  ..          ......+....+.++
T Consensus        11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~--~~----------~~~~~~~~~~~~~~~   76 (161)
T PF13489_consen   11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK--RN----------VVFDNFDAQDPPFPD   76 (161)
T ss_dssp             HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH--TT----------SEEEEEECHTHHCHS
T ss_pred             HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh--hh----------hhhhhhhhhhhhccc
Confidence            3344444323577899999999999999998877  599999999999987  11          222333333444467


Q ss_pred             CCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          160 SSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       160 ~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++||+|+|+.+|+|++|+..+++++.++||||
T Consensus        77 ~~fD~i~~~~~l~~~~d~~~~l~~l~~~Lkpg  108 (161)
T PF13489_consen   77 GSFDLIICNDVLEHLPDPEEFLKELSRLLKPG  108 (161)
T ss_dssp             SSEEEEEEESSGGGSSHHHHHHHHHHHCEEEE
T ss_pred             cchhhHhhHHHHhhcccHHHHHHHHHHhcCCC
Confidence            89999999999999999999999999999986

...

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.67  E-value=2e-15  Score=116.20  Aligned_cols=128  Identities=19%  Similarity=0.162  Sum_probs=98.9

Q ss_pred             HHHHHhhhhcCCCchH-----HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCC-ceEEEEECChhHHHHH
Q 029554           58 KQRDRAAWLTRPNDSF-----VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGI-EKLIMMDTSYDMLKLC  131 (191)
Q Consensus        58 ~~~~~~a~~y~~~~~~-----~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~-~~v~~vD~s~~~l~~a  131 (191)
                      .+|+..+.+|+..+..     .......++..+.  ..++.+|||+|||+|..+..+...++. .+++++|+++.+++.+
T Consensus         3 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~   80 (223)
T TIGR01934         3 EMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVA   80 (223)
T ss_pred             hHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHH
Confidence            3456666666664322     1222333444433  236779999999999999999887754 6899999999999999


Q ss_pred             HHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          132 KDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++..    ...++.+..+|+...++++++||+|+++++++|..++..+++++.++|+||
T Consensus        81 ~~~~~----~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~g  136 (223)
T TIGR01934        81 KKKSE----LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPG  136 (223)
T ss_pred             HHHhc----cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCC
Confidence            88763    233578889998888877789999999999999999999999999999997

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.64  E-value=5.3e-15  Score=111.46  Aligned_cols=94  Identities=15%  Similarity=0.064  Sum_probs=80.3

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ++.+|||+|||+|..+..++...+..+|+++|+|+.|++.++++...  ....++.+..+|.+.++. +++||+|+++. 
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~--~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-  120 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE--LGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-  120 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH--cCCCCEEEEeccHhhCCC-CCCccEEEEcc-
Confidence            47899999999999999888766778999999999999999988765  233458999999888776 67899999975 


Q ss_pred             ccCcCChHHHHHHHHhccCCC
Q 029554          171 LHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                         +.++..++.++.++||||
T Consensus       121 ---~~~~~~~l~~~~~~LkpG  138 (187)
T PRK00107        121 ---VASLSDLVELCLPLLKPG  138 (187)
T ss_pred             ---ccCHHHHHHHHHHhcCCC
Confidence               357889999999999997

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.64  E-value=1.5e-15  Score=117.58  Aligned_cols=96  Identities=15%  Similarity=0.042  Sum_probs=83.2

Q ss_pred             eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccC
Q 029554           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHW  173 (191)
Q Consensus        94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~  173 (191)
                      +|||+|||+|..+..+++.++..+++++|+|+.+++.++++.... +...++.+...|....+++ ++||+|++..+++|
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~-gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~   79 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL-GLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH   79 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-CCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence            699999999999999988776689999999999999999887541 2334688899998766654 58999999999999


Q ss_pred             cCChHHHHHHHHhccCCC
Q 029554          174 TNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       174 ~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++...+++++.++||||
T Consensus        80 ~~~~~~~l~~~~~~Lkpg   97 (224)
T smart00828       80 IKDKMDLFSNISRHLKDG   97 (224)
T ss_pred             CCCHHHHHHHHHHHcCCC
Confidence            999999999999999997

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.64  E-value=2.7e-15  Score=112.03  Aligned_cols=96  Identities=22%  Similarity=0.269  Sum_probs=75.8

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      .....++||+|||.|.++..|+.++  .+++++|+|+..++.|+++..    ...++.+.+.|+.... +++.||+|+++
T Consensus        41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~----~~~~V~~~~~dvp~~~-P~~~FDLIV~S  113 (201)
T PF05401_consen   41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLA----GLPHVEWIQADVPEFW-PEGRFDLIVLS  113 (201)
T ss_dssp             TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTT----T-SSEEEEES-TTT----SS-EEEEEEE
T ss_pred             ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcC----CCCCeEEEECcCCCCC-CCCCeeEEEEe
Confidence            4456789999999999999999988  899999999999999999985    3457999999987654 67899999999


Q ss_pred             CcccCcCC---hHHHHHHHHhccCCC
Q 029554          169 LGLHWTND---LPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d---~~~~l~~i~r~Lkpg  191 (191)
                      .+++|+.+   +..++.++...|+||
T Consensus       114 EVlYYL~~~~~L~~~l~~l~~~L~pg  139 (201)
T PF05401_consen  114 EVLYYLDDAEDLRAALDRLVAALAPG  139 (201)
T ss_dssp             S-GGGSSSHHHHHHHHHHHHHTEEEE
T ss_pred             hHhHcCCCHHHHHHHHHHHHHHhCCC
Confidence            99999975   456889999999886

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.64  E-value=2.8e-15  Score=120.38  Aligned_cols=95  Identities=17%  Similarity=0.161  Sum_probs=81.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ++.+|||+|||+|.++..++..+  .+|+++|+|+.+++.++++...   ...++.+...|+...++ +++||+|+++.+
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g--~~V~avD~s~~ai~~~~~~~~~---~~l~v~~~~~D~~~~~~-~~~fD~I~~~~v  193 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLG--FDVTAVDINQQSLENLQEIAEK---ENLNIRTGLYDINSASI-QEEYDFILSTVV  193 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHH---cCCceEEEEechhcccc-cCCccEEEEcch
Confidence            34589999999999999999876  7999999999999999887754   22367888888876655 578999999999


Q ss_pred             ccCcC--ChHHHHHHHHhccCCC
Q 029554          171 LHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      +||++  +...+++++.++|+||
T Consensus       194 l~~l~~~~~~~~l~~~~~~Lkpg  216 (287)
T PRK12335        194 LMFLNRERIPAIIKNMQEHTNPG  216 (287)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCC
Confidence            99985  5678999999999997

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.62  E-value=1.9e-15  Score=113.83  Aligned_cols=122  Identities=20%  Similarity=0.159  Sum_probs=91.7

Q ss_pred             HHhhhhcCCC---chHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh
Q 029554           61 DRAAWLTRPN---DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD  137 (191)
Q Consensus        61 ~~~a~~y~~~---~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~  137 (191)
                      +..|..|...   ...+.++..+-++.+..-.....-|||||||+|..+..|.+.+  ..++|+|+|+.|++.|.++.-+
T Consensus        17 d~eA~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~e~e   94 (270)
T KOG1541|consen   17 DTEAPKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVERELE   94 (270)
T ss_pred             hhhhhhccccceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHHhhhh
Confidence            3445555553   3456777778887777422235679999999999999999877  8999999999999999873211


Q ss_pred             ccCCCCceeeEecCC-CCCCCCCCCcceEEeCCcccCc-------CChH----HHHHHHHhccCCC
Q 029554          138 AHNDNIETCFVVGDE-EFLPLKESSLDLAISCLGLHWT-------NDLP----GAMIQVSIFLLPD  191 (191)
Q Consensus       138 ~~~~~~~~~~~~~d~-~~l~~~~~~fDlVis~~~l~~~-------~d~~----~~l~~i~r~Lkpg  191 (191)
                             -.++.+|+ +.+||.++.||.|||..+++|.       +++.    .++..+..+|++|
T Consensus        95 -------gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg  153 (270)
T KOG1541|consen   95 -------GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRG  153 (270)
T ss_pred             -------cCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccC
Confidence                   45677775 5789999999999999999986       2232    4677777777764

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.61  E-value=3.1e-15  Score=114.28  Aligned_cols=99  Identities=15%  Similarity=0.108  Sum_probs=83.2

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC-CCCC--CCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFLP--LKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~-~~l~--~~~~~fDlVis  167 (191)
                      +..+|||+|||+|..+..+++..|..+|+++|+|+.|++.++++...  ....++.++++|+ +.++  +++++||+|++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~--~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~  117 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEE--EGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL  117 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHH--cCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence            56789999999999999998877778999999999999999988764  2335689999998 7665  67789999999


Q ss_pred             CCcccCcC--------ChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTN--------DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~--------d~~~~l~~i~r~Lkpg  191 (191)
                      ++...|..        ....+++++.++||||
T Consensus       118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg  149 (202)
T PRK00121        118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPG  149 (202)
T ss_pred             ECCCCCCCccccccccCCHHHHHHHHHHcCCC
Confidence            88776643        2477899999999996

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.61  E-value=1.3e-14  Score=115.71  Aligned_cols=123  Identities=20%  Similarity=0.167  Sum_probs=86.1

Q ss_pred             ccCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCC---ceEEEEECChh
Q 029554           50 IFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGI---EKLIMMDTSYD  126 (191)
Q Consensus        50 ~~d~~~~~~~~~~~a~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~---~~v~~vD~s~~  126 (191)
                      -+++.++.........  .....+.+.+...+.+.+   .....+|||+|||+|..+..+.+..+.   .+++|+|+|+.
T Consensus        49 ~d~~~~~~ar~~fl~~--g~y~~l~~~i~~~l~~~l---~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~  123 (272)
T PRK11088         49 GDNKEMMQARRAFLDA--GHYQPLRDAVANLLAERL---DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKV  123 (272)
T ss_pred             CcCHHHHHHHHHHHHC--CChHHHHHHHHHHHHHhc---CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHH
Confidence            4555555544333221  112234444443333322   234568999999999999988775432   47999999999


Q ss_pred             HHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          127 MLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       127 ~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |++.|+++..       ++.+.++|...+|+++++||+|++.++.       ..+.++.|+||||
T Consensus       124 ~l~~A~~~~~-------~~~~~~~d~~~lp~~~~sfD~I~~~~~~-------~~~~e~~rvLkpg  174 (272)
T PRK11088        124 AIKYAAKRYP-------QVTFCVASSHRLPFADQSLDAIIRIYAP-------CKAEELARVVKPG  174 (272)
T ss_pred             HHHHHHHhCC-------CCeEEEeecccCCCcCCceeEEEEecCC-------CCHHHHHhhccCC
Confidence            9999976542       3788999999999999999999987652       3468899999996

>PRK06922 hypothetical protein; Provisional

Probab=99.61  E-value=3.1e-15  Score=129.35  Aligned_cols=98  Identities=15%  Similarity=0.150  Sum_probs=84.0

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlVis~  168 (191)
                      ++.+|||+|||+|..+..++..+|..+++|+|+|+.|++.++++...   ...++.++++|...++  +++++||+|+++
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~---~g~~ie~I~gDa~dLp~~fedeSFDvVVsn  494 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN---EGRSWNVIKGDAINLSSSFEKESVDTIVYS  494 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh---cCCCeEEEEcchHhCccccCCCCEEEEEEc
Confidence            57899999999999999998877889999999999999999887643   2345778889987777  778999999999


Q ss_pred             CcccCc-------------CChHHHHHHHHhccCCC
Q 029554          169 LGLHWT-------------NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~-------------~d~~~~l~~i~r~Lkpg  191 (191)
                      .++||+             .++..+++++.++||||
T Consensus       495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPG  530 (677)
T PRK06922        495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG  530 (677)
T ss_pred             hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCC
Confidence            999875             25678999999999997

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.59  E-value=7.2e-15  Score=111.49  Aligned_cols=90  Identities=18%  Similarity=0.110  Sum_probs=75.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-C-CCCCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-L-PLKESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l-~~~~~~fDlVis~  168 (191)
                      ++.+|||+|||+|.++..+.+.. ...++++|+|+.+++.++++         ++.++++|++. + ++++++||+|+++
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~---------~~~~~~~d~~~~l~~~~~~sfD~Vi~~   82 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR---------GVNVIQGDLDEGLEAFPDKSFDYVILS   82 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc---------CCeEEEEEhhhcccccCCCCcCEEEEh
Confidence            56789999999999999887653 36789999999999888542         15677788764 4 3677899999999


Q ss_pred             CcccCcCChHHHHHHHHhccCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                      .++||++|+..+++++.+++++
T Consensus        83 ~~l~~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        83 QTLQATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             hHhHcCcCHHHHHHHHHHhCCe
Confidence            9999999999999999998875

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.59  E-value=8.9e-15  Score=116.02  Aligned_cols=101  Identities=13%  Similarity=0.004  Sum_probs=78.0

Q ss_pred             CCCeEEEEcCCccHH----HHHHhhcCC-----CceEEEEECChhHHHHHHHhhhh-c--cC------------------
Q 029554           91 TFPTALCLGGSLEAV----RRLLRGRGG-----IEKLIMMDTSYDMLKLCKDAQQD-A--HN------------------  140 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~----~~~l~~~~~-----~~~v~~vD~s~~~l~~a~~~~~~-~--~~------------------  140 (191)
                      .+.+|||+|||+|..    +..+.+.++     ..+|+|+|+|+.|++.|++..-. +  .+                  
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            346899999999973    444544332     36899999999999999875310 0  00                  


Q ss_pred             ----CCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCC--hHHHHHHHHhccCCC
Q 029554          141 ----DNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       141 ----~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d--~~~~l~~i~r~Lkpg  191 (191)
                          ...++.|.+.|+...+++.++||+|+|.++++|+++  ...++.++.++|+||
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG  235 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG  235 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence                013588999999888777889999999999999964  457999999999997

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.58  E-value=3.3e-14  Score=106.75  Aligned_cols=94  Identities=14%  Similarity=0.057  Sum_probs=77.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      .+.+|||+|||+|.++..++..++..+|+++|+|+.|++.++++...  ....++.++++|++.++ ..++||+|+++. 
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~--~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-  117 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE--LGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-  117 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH--hCCCCeEEEecchhhcc-ccCCccEEEehh-
Confidence            46799999999999999888777678899999999999999887754  23346899999988764 357899999976 


Q ss_pred             ccCcCChHHHHHHHHhccCCC
Q 029554          171 LHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++   +....+..+.++|+||
T Consensus       118 ~~---~~~~~~~~~~~~Lkpg  135 (181)
T TIGR00138       118 LA---SLNVLLELTLNLLKVG  135 (181)
T ss_pred             hh---CHHHHHHHHHHhcCCC
Confidence            43   5677888899999996

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.58  E-value=3.8e-14  Score=99.27  Aligned_cols=109  Identities=13%  Similarity=0.016  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-  154 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-  154 (191)
                      ++...++..+.  ..++.+|||+|||+|..+..+++..+..+|+++|+|+.+++.++++...  ....++.++..|... 
T Consensus         6 ~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~   81 (124)
T TIGR02469         6 EVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARR--FGVSNIVIVEGDAPEA   81 (124)
T ss_pred             HHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHH--hCCCceEEEecccccc
Confidence            34444555443  3345699999999999999999887668999999999999999887754  233457788788654 


Q ss_pred             CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          155 LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++...++||.|++....++   ...+++++.++|+||
T Consensus        82 ~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~g  115 (124)
T TIGR02469        82 LEDSLPEPDRVFIGGSGGL---LQEILEAIWRRLRPG  115 (124)
T ss_pred             ChhhcCCCCEEEECCcchh---HHHHHHHHHHHcCCC
Confidence            3333468999999876553   468899999999996

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.58  E-value=3.3e-14  Score=109.82  Aligned_cols=107  Identities=20%  Similarity=0.143  Sum_probs=83.5

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK  158 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~  158 (191)
                      ..++..+.....+..+|||+|||+|.++..++..+  .+++|+|+|+.|++.++++.... ....++.+.+.|+..++  
T Consensus        43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~v~gvD~s~~~i~~a~~~~~~~-~~~~~i~~~~~d~~~~~--  117 (219)
T TIGR02021        43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMVQMARNRAQGR-DVAGNVEFEVNDLLSLC--  117 (219)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhc-CCCCceEEEECChhhCC--
Confidence            34444444212356799999999999999998876  79999999999999999887541 11236889999988775  


Q ss_pred             CCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                       ++||+|++..+++|++  ++..++.++.++++++
T Consensus       118 -~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~  151 (219)
T TIGR02021       118 -GEFDIVVCMDVLIHYPASDMAKALGHLASLTKER  151 (219)
T ss_pred             -CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCC
Confidence             7899999999998874  4567899999888764

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.58  E-value=1.1e-14  Score=115.72  Aligned_cols=110  Identities=15%  Similarity=0.123  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      ....+.+++.+.  .+++.+|||||||.|.++..+++++ .++|+|+.+|+...+.+++++.+. +...++.+...|...
T Consensus        48 ~~k~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~-gl~~~v~v~~~D~~~  123 (273)
T PF02353_consen   48 ERKLDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREA-GLEDRVEVRLQDYRD  123 (273)
T ss_dssp             HHHHHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS-TSSSTEEEEES-GGG
T ss_pred             HHHHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhc-CCCCceEEEEeeccc
Confidence            333445555554  4588999999999999999999984 389999999999999999988752 334568888899877


Q ss_pred             CCCCCCCcceEEeCCcccCc--CChHHHHHHHHhccCCC
Q 029554          155 LPLKESSLDLAISCLGLHWT--NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 l~~~~~~fDlVis~~~l~~~--~d~~~~l~~i~r~Lkpg  191 (191)
                      ++   ++||.|+|..++.|+  .+...+++++.++||||
T Consensus       124 ~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg  159 (273)
T PF02353_consen  124 LP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG  159 (273)
T ss_dssp             ------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT
T ss_pred             cC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC
Confidence            65   389999999999999  46789999999999997

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.57  E-value=8.5e-15  Score=109.07  Aligned_cols=90  Identities=14%  Similarity=0.077  Sum_probs=79.1

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-CC-CCCCCCcceEEe
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FL-PLKESSLDLAIS  167 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~l-~~~~~~fDlVis  167 (191)
                      .++.+|||+|||.|.+...|.+. ...+..|+|+++..+..|.++.         +.++++|++ .+ .|++++||.||.
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~rG---------v~Viq~Dld~gL~~f~d~sFD~VIl   81 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVARG---------VSVIQGDLDEGLADFPDQSFDYVIL   81 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHcC---------CCEEECCHHHhHhhCCCCCccEEeh
Confidence            47899999999999999999874 3488999999999999997764         678999976 45 489999999999


Q ss_pred             CCcccCcCChHHHHHHHHhccC
Q 029554          168 CLGLHWTNDLPGAMIQVSIFLL  189 (191)
Q Consensus       168 ~~~l~~~~d~~~~l~~i~r~Lk  189 (191)
                      +.+|+++.++..+|.|+.|+=|
T Consensus        82 sqtLQ~~~~P~~vL~EmlRVgr  103 (193)
T PF07021_consen   82 SQTLQAVRRPDEVLEEMLRVGR  103 (193)
T ss_pred             HhHHHhHhHHHHHHHHHHHhcC
Confidence            9999999999999999998754

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.57  E-value=1.2e-14  Score=124.30  Aligned_cols=104  Identities=18%  Similarity=0.201  Sum_probs=85.0

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC--CCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE--FLPL  157 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~--~l~~  157 (191)
                      .++..+.  ..+..+|||+|||+|.++..|++.+  .+|+++|+|+.|++.+++..    +...++.++++|+.  .+++
T Consensus        28 ~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~----~~~~~i~~~~~d~~~~~~~~   99 (475)
T PLN02336         28 EILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESIN----GHYKNVKFMCADVTSPDLNI   99 (475)
T ss_pred             HHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHh----ccCCceEEEEecccccccCC
Confidence            4444444  2356689999999999999999876  79999999999998876532    23456889999975  4677


Q ss_pred             CCCCcceEEeCCcccCcCC--hHHHHHHHHhccCCC
Q 029554          158 KESSLDLAISCLGLHWTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~d--~~~~l~~i~r~Lkpg  191 (191)
                      ++++||+|+++.+++|+.+  ...++.++.++||||
T Consensus       100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~g  135 (475)
T PLN02336        100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVG  135 (475)
T ss_pred             CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCC
Confidence            8889999999999999976  578999999999996

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.55  E-value=1.1e-13  Score=112.07  Aligned_cols=106  Identities=17%  Similarity=0.068  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHhc-ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc---CCCCceeeEecCC
Q 029554           77 VAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH---NDNIETCFVVGDE  152 (191)
Q Consensus        77 ~~~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~---~~~~~~~~~~~d~  152 (191)
                      +.+.++..+... ..++.+|||+|||+|.++..+.+.+  .+|+++|+|+.|++.++++.....   ....++.+...|+
T Consensus       129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl  206 (315)
T PLN02585        129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL  206 (315)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence            334455554421 1256799999999999999999876  799999999999999998875411   1134577888887


Q ss_pred             CCCCCCCCCcceEEeCCcccCcCCh--HHHHHHHHhc
Q 029554          153 EFLPLKESSLDLAISCLGLHWTNDL--PGAMIQVSIF  187 (191)
Q Consensus       153 ~~l~~~~~~fDlVis~~~l~~~~d~--~~~l~~i~r~  187 (191)
                      +.+   +++||+|+|..+++|+++.  ...+..+.++
T Consensus       207 ~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l  240 (315)
T PLN02585        207 ESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLASL  240 (315)
T ss_pred             hhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh
Confidence            654   4789999999999888653  3455555543

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.55  E-value=6.7e-14  Score=107.12  Aligned_cols=107  Identities=9%  Similarity=-0.068  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      .+...+++.+.  ..++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++... ....++.+..+|...
T Consensus        59 ~~~~~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~-~~~~~v~~~~~d~~~  135 (205)
T PRK13944         59 HMVAMMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL-GYWGVVEVYHGDGKR  135 (205)
T ss_pred             HHHHHHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEECCccc
Confidence            34445555554  3467899999999999998887754 2468999999999999999887641 112357889999776


Q ss_pred             CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          155 LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .....++||.|+++.++++++      .++.++|+||
T Consensus       136 ~~~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~g  166 (205)
T PRK13944        136 GLEKHAPFDAIIVTAAASTIP------SALVRQLKDG  166 (205)
T ss_pred             CCccCCCccEEEEccCcchhh------HHHHHhcCcC
Confidence            544567899999999987764      4677889886

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.55  E-value=6.6e-15  Score=112.38  Aligned_cols=95  Identities=22%  Similarity=0.177  Sum_probs=73.6

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCccc
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLH  172 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~  172 (191)
                      ..++|+|||+|..++.++..+  .+|+++|+|+.|++.+++..+. ............+...+--.++++|+|+|..++|
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~-~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H  111 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPV-TYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH  111 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCc-ccccCCccccccccccccCCCcceeeehhhhhHH
Confidence            379999999998888888887  9999999999999999876532 1111222223233333333378999999999999


Q ss_pred             CcCChHHHHHHHHhccCCC
Q 029554          173 WTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       173 ~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |+ |+..+++++.|+||++
T Consensus       112 WF-dle~fy~~~~rvLRk~  129 (261)
T KOG3010|consen  112 WF-DLERFYKEAYRVLRKD  129 (261)
T ss_pred             hh-chHHHHHHHHHHcCCC
Confidence            99 8999999999999874

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.55  E-value=2.4e-14  Score=108.67  Aligned_cols=99  Identities=11%  Similarity=0.104  Sum_probs=82.0

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---CCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---LKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---~~~~~fDlVis  167 (191)
                      ...+|||||||+|.++..++...|..+++|+|+++.+++.++++...  ....++.++++|+..++   ++++++|.|++
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~--~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~   93 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANK--LGLKNLHVLCGDANELLDKFFPDGSLSKVFL   93 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH--hCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence            45689999999999999999988889999999999999999887764  23347899999986542   45678999999


Q ss_pred             CCcccCcCCh--------HHHHHHHHhccCCC
Q 029554          168 CLGLHWTNDL--------PGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d~--------~~~l~~i~r~Lkpg  191 (191)
                      ++...|....        ..++.++.++||||
T Consensus        94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg  125 (194)
T TIGR00091        94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKG  125 (194)
T ss_pred             ECCCcCCCCCccccccCCHHHHHHHHHHhCCC
Confidence            9887765432        57899999999997

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.54  E-value=4.3e-14  Score=106.32  Aligned_cols=95  Identities=16%  Similarity=0.130  Sum_probs=76.5

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ++.++||+|||.|.++..|++.|  ..|+++|.|+..++.+++....   ....+...+.|++...++ +.||+|++..+
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~---~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v  103 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEE---EGLDIRTRVADLNDFDFP-EEYDFIVSTVV  103 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHH---TT-TEEEEE-BGCCBS-T-TTEEEEEEESS
T ss_pred             CCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhh---cCceeEEEEecchhcccc-CCcCEEEEEEE
Confidence            56799999999999999999998  8999999999999998776654   344588889998877765 68999999999


Q ss_pred             ccCcC--ChHHHHHHHHhccCCC
Q 029554          171 LHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      ++|++  ..+.++..+...++||
T Consensus       104 ~~fL~~~~~~~i~~~m~~~~~pG  126 (192)
T PF03848_consen  104 FMFLQRELRPQIIENMKAATKPG  126 (192)
T ss_dssp             GGGS-GGGHHHHHHHHHHTEEEE
T ss_pred             eccCCHHHHHHHHHHHHhhcCCc
Confidence            99885  4567899999999886

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.54  E-value=9.3e-14  Score=109.71  Aligned_cols=106  Identities=13%  Similarity=0.044  Sum_probs=88.6

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK  158 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~  158 (191)
                      +.+.+.+.  ..++.+|||||||-|.++..+++.+ ..+|+|+++|+++.+.+++++... +...++++...|...+.  
T Consensus        62 ~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~-gl~~~v~v~l~d~rd~~--  135 (283)
T COG2230          62 DLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAAR-GLEDNVEVRLQDYRDFE--  135 (283)
T ss_pred             HHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHc-CCCcccEEEeccccccc--
Confidence            34444444  4689999999999999999999986 589999999999999999988651 23457888888887764  


Q ss_pred             CCCcceEEeCCcccCcCC--hHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~~d--~~~~l~~i~r~Lkpg  191 (191)
                       +.||-|+|..+++|+..  .+.++..+.++|+||
T Consensus       136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~  169 (283)
T COG2230         136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG  169 (283)
T ss_pred             -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCC
Confidence             44999999999999965  899999999999997

>PLN03075 nicotianamine synthase; Provisional

Probab=99.52  E-value=2.4e-13  Score=108.43  Aligned_cols=100  Identities=7%  Similarity=0.025  Sum_probs=80.6

Q ss_pred             CCCeEEEEcCCccHHHHHH--hhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLL--RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l--~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      .+.+|+|||||.|.++..+  +..+|..+++++|+++.+++.|++.+........++.|..+|+...+...+.||+|++.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~  202 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA  202 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence            6789999999988554443  34567789999999999999999887431233456999999987654334789999999


Q ss_pred             CcccCc--CChHHHHHHHHhccCCC
Q 029554          169 LGLHWT--NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~--~d~~~~l~~i~r~Lkpg  191 (191)
                       +++++  .++..++.++.++|+||
T Consensus       203 -ALi~~dk~~k~~vL~~l~~~LkPG  226 (296)
T PLN03075        203 -ALVGMDKEEKVKVIEHLGKHMAPG  226 (296)
T ss_pred             -cccccccccHHHHHHHHHHhcCCC
Confidence             88877  68999999999999997

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.52  E-value=1.4e-13  Score=114.49  Aligned_cols=94  Identities=16%  Similarity=0.077  Sum_probs=78.5

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..++.+|||||||+|.++..+++.. ..+|+++|+|+.+++.++++...     ..+.+...|...+   +++||.|++.
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~-----l~v~~~~~D~~~l---~~~fD~Ivs~  235 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG-----LPVEIRLQDYRDL---NGQFDRIVSV  235 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc-----CeEEEEECchhhc---CCCCCEEEEe
Confidence            3477899999999999999898764 36899999999999999987632     2367777787655   3689999999


Q ss_pred             CcccCcC--ChHHHHHHHHhccCCC
Q 029554          169 LGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      .+++|++  ++..+++++.++||||
T Consensus       236 ~~~ehvg~~~~~~~l~~i~r~LkpG  260 (383)
T PRK11705        236 GMFEHVGPKNYRTYFEVVRRCLKPD  260 (383)
T ss_pred             CchhhCChHHHHHHHHHHHHHcCCC
Confidence            9999985  4578999999999997

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.52  E-value=2.3e-13  Score=104.65  Aligned_cols=99  Identities=10%  Similarity=-0.065  Sum_probs=79.0

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh----------ccCCCCceeeEecCCCCCCCC-C
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD----------AHNDNIETCFVVGDEEFLPLK-E  159 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~----------~~~~~~~~~~~~~d~~~l~~~-~  159 (191)
                      ++.+|||+|||.|..+..|+++|  .+|+|+|+|+.+++.+.++...          ......++++.++|+..++.. .
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~  111 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL  111 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence            56799999999999999999988  8999999999999986443210          001234688999998877633 4


Q ss_pred             CCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          160 SSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       160 ~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      +.||.|+-..+++|++  .....+..+.++||||
T Consensus       112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg  145 (213)
T TIGR03840       112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG  145 (213)
T ss_pred             CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC
Confidence            6799999999999985  3456899999999997

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.51  E-value=4e-13  Score=101.32  Aligned_cols=112  Identities=15%  Similarity=0.072  Sum_probs=84.9

Q ss_pred             chHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEec
Q 029554           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG  150 (191)
Q Consensus        71 ~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~  150 (191)
                      ...++.+...++..+.  ..++.+|||+|||+|.++..++..++..+++++|+|+.+++.++++...  ....++.++.+
T Consensus        13 ~~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~--~~~~~i~~~~~   88 (187)
T PRK08287         13 PMTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR--FGCGNIDIIPG   88 (187)
T ss_pred             CCchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--hCCCCeEEEec
Confidence            3445555555555554  3367799999999999999998887778999999999999999987754  22235788888


Q ss_pred             CCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          151 DEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       151 d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |.. .++ .++||+|+++...+   .+..++.++.++|+||
T Consensus        89 d~~-~~~-~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~g  124 (187)
T PRK08287         89 EAP-IEL-PGKADAIFIGGSGG---NLTAIIDWSLAHLHPG  124 (187)
T ss_pred             Cch-hhc-CcCCCEEEECCCcc---CHHHHHHHHHHhcCCC
Confidence            864 233 35799999987654   3567889999999986

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.51  E-value=3.1e-13  Score=100.54  Aligned_cols=106  Identities=26%  Similarity=0.246  Sum_probs=81.1

Q ss_pred             HHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCC
Q 029554           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKES  160 (191)
Q Consensus        81 l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~  160 (191)
                      |++.+.  .....+|||+|||+|.++..++..++..+|+++|+++.+++.++++...  +...++.+...|..... +++
T Consensus        23 L~~~l~--~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~--n~~~~v~~~~~d~~~~~-~~~   97 (170)
T PF05175_consen   23 LLDNLP--KHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER--NGLENVEVVQSDLFEAL-PDG   97 (170)
T ss_dssp             HHHHHH--HHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH--TTCTTEEEEESSTTTTC-CTT
T ss_pred             HHHHHh--hccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh--cCccccccccccccccc-ccc
Confidence            444444  2367789999999999999999998877899999999999999988875  33334888888854322 368


Q ss_pred             CcceEEeCCcccCcCC-----hHHHHHHHHhccCCC
Q 029554          161 SLDLAISCLGLHWTND-----LPGAMIQVSIFLLPD  191 (191)
Q Consensus       161 ~fDlVis~~~l~~~~d-----~~~~l~~i~r~Lkpg  191 (191)
                      +||+|+||--++.-.+     ...++.+..++|+||
T Consensus        98 ~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~  133 (170)
T PF05175_consen   98 KFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPG  133 (170)
T ss_dssp             CEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEE
T ss_pred             ceeEEEEccchhcccccchhhHHHHHHHHHHhccCC
Confidence            9999999987766544     467888999999885

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.51  E-value=3.8e-13  Score=103.46  Aligned_cols=108  Identities=10%  Similarity=-0.031  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC
Q 029554           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE  152 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~  152 (191)
                      ...+...+++.+.  ..++.+|||+|||+|+.+..++... +..+|+++|+++.+++.++++...  ....++.++.+|.
T Consensus        61 ~p~~~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~--~g~~~v~~~~gd~  136 (212)
T PRK13942         61 AIHMVAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK--LGYDNVEVIVGDG  136 (212)
T ss_pred             cHHHHHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH--cCCCCeEEEECCc
Confidence            3445556666655  4578899999999999999887763 346999999999999999998865  2335689999997


Q ss_pred             CCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          153 EFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       153 ~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .....+.++||+|++..+.++++      ..+.+.||||
T Consensus       137 ~~~~~~~~~fD~I~~~~~~~~~~------~~l~~~Lkpg  169 (212)
T PRK13942        137 TLGYEENAPYDRIYVTAAGPDIP------KPLIEQLKDG  169 (212)
T ss_pred             ccCCCcCCCcCEEEECCCcccch------HHHHHhhCCC
Confidence            76555668899999988776542      3566788886

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.50  E-value=3.9e-13  Score=104.26  Aligned_cols=106  Identities=20%  Similarity=0.151  Sum_probs=78.7

Q ss_pred             HHHHHHHHhc-ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC
Q 029554           79 ENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (191)
Q Consensus        79 ~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~  157 (191)
                      ..++..+... ..+..+|||+|||+|.++..+.+.+  .+|+++|+|+.|++.++++.... ....++.+..+|++.   
T Consensus        50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~-~~~~~i~~~~~d~~~---  123 (230)
T PRK07580         50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEA-GLAGNITFEVGDLES---  123 (230)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc-CCccCcEEEEcCchh---
Confidence            3444444421 2356799999999999999998876  67999999999999999887541 111467888888433   


Q ss_pred             CCCCcceEEeCCcccCcC--ChHHHHHHHHhccCC
Q 029554          158 KESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLP  190 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkp  190 (191)
                      .+++||+|++..+++|++  +....++++.+++++
T Consensus       124 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~  158 (230)
T PRK07580        124 LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRG  158 (230)
T ss_pred             ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCC
Confidence            357899999999998875  345677888776654

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.50  E-value=2.4e-13  Score=112.11  Aligned_cols=100  Identities=9%  Similarity=0.019  Sum_probs=84.9

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC--CCCCCCcceEEe
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL--PLKESSLDLAIS  167 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l--~~~~~~fDlVis  167 (191)
                      ..+..+||||||+|..+..++...|...++|+|+++.+++.+.++...  ....++.++++|+..+  .++++++|.|++
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~--~gL~NV~~i~~DA~~ll~~~~~~s~D~I~l  198 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIEL--LNLKNLLIINYDARLLLELLPSNSVEKIFV  198 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH--cCCCcEEEEECCHHHhhhhCCCCceeEEEE
Confidence            345689999999999999999998889999999999999999988765  3446799999997643  467899999999


Q ss_pred             CCcccCcCCh------HHHHHHHHhccCCC
Q 029554          168 CLGLHWTNDL------PGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d~------~~~l~~i~r~Lkpg  191 (191)
                      ++...|....      ..++.++.++|+||
T Consensus       199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpG  228 (390)
T PRK14121        199 HFPVPWDKKPHRRVISEDFLNEALRVLKPG  228 (390)
T ss_pred             eCCCCccccchhhccHHHHHHHHHHHcCCC
Confidence            9887776443      57899999999997

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.49  E-value=4.1e-13  Score=100.57  Aligned_cols=94  Identities=15%  Similarity=0.092  Sum_probs=76.2

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ++.+|||+|||+|.++..+...+  .+++++|+|+.+++.++++...   ...++.+..+|.....  .++||+|+++..
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p   91 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKL---NNVGLDVVMTDLFKGV--RGKFDVILFNPP   91 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHH---cCCceEEEEccccccc--CCcccEEEECCC
Confidence            55789999999999999999887  4899999999999999988754   2235778888875543  358999999988


Q ss_pred             ccCcCC---------------------hHHHHHHHHhccCCC
Q 029554          171 LHWTND---------------------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d---------------------~~~~l~~i~r~Lkpg  191 (191)
                      +++..+                     ...++.++.++|+||
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g  133 (179)
T TIGR00537        92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG  133 (179)
T ss_pred             CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC
Confidence            776643                     245799999999986

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.49  E-value=9.5e-13  Score=102.45  Aligned_cols=97  Identities=11%  Similarity=0.082  Sum_probs=81.0

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-CCCCCcceEEeC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKESSLDLAISC  168 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-~~~~~fDlVis~  168 (191)
                      .++.+|||+|||+|.++..+.+.+  .+++++|+++.+++.++++...   ....+.+...+....+ ..++.||+|+++
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~  121 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHALE---SGLKIDYRQTTAEELAAEHPGQFDVVTCM  121 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHHH---cCCceEEEecCHHHhhhhcCCCccEEEEh
Confidence            357789999999999999998876  7899999999999999887653   2224667777766554 345789999999


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .+++|+.++..++.++.++|+||
T Consensus       122 ~~l~~~~~~~~~l~~~~~~L~~g  144 (233)
T PRK05134        122 EMLEHVPDPASFVRACAKLVKPG  144 (233)
T ss_pred             hHhhccCCHHHHHHHHHHHcCCC
Confidence            99999999999999999999986

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.48  E-value=2.7e-13  Score=104.83  Aligned_cols=97  Identities=16%  Similarity=0.109  Sum_probs=81.5

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC-CCCcceEEeCC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK-ESSLDLAISCL  169 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~-~~~fDlVis~~  169 (191)
                      .+.+|||+|||+|.++..+.+.+  .+++++|+++.+++.++++...  ....++.+...|...++.. .++||+|+++.
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~  120 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKK--DPLLKIEYRCTSVEDLAEKGAKSFDVVTCME  120 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHH--cCCCceEEEeCCHHHhhcCCCCCccEEEehh
Confidence            36689999999999999888766  6799999999999999887754  1222577888887766543 37899999999


Q ss_pred             cccCcCChHHHHHHHHhccCCC
Q 029554          170 GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++|+.++..++.++.++|+||
T Consensus       121 ~l~~~~~~~~~l~~~~~~L~~g  142 (224)
T TIGR01983       121 VLEHVPDPQAFIRACAQLLKPG  142 (224)
T ss_pred             HHHhCCCHHHHHHHHHHhcCCC
Confidence            9999999999999999999986

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.47  E-value=7e-13  Score=108.69  Aligned_cols=96  Identities=16%  Similarity=0.057  Sum_probs=77.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ..++|||+|||+|.++..+.+.+|..+|+++|+|+.+++.++++...  +. ....++..|....  .++.||+|+||..
T Consensus       196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~--n~-l~~~~~~~D~~~~--~~~~fDlIvsNPP  270 (342)
T PRK09489        196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAA--NG-LEGEVFASNVFSD--IKGRFDMIISNPP  270 (342)
T ss_pred             CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--cC-CCCEEEEcccccc--cCCCccEEEECCC
Confidence            45689999999999999999988778999999999999999988765  22 2346666775432  2578999999999


Q ss_pred             ccCcC-----ChHHHHHHHHhccCCC
Q 029554          171 LHWTN-----DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~-----d~~~~l~~i~r~Lkpg  191 (191)
                      +|+..     ....++.++.++||||
T Consensus       271 FH~g~~~~~~~~~~~i~~a~~~Lkpg  296 (342)
T PRK09489        271 FHDGIQTSLDAAQTLIRGAVRHLNSG  296 (342)
T ss_pred             ccCCccccHHHHHHHHHHHHHhcCcC
Confidence            98742     3468899999999996

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.47  E-value=3.9e-13  Score=111.11  Aligned_cols=99  Identities=9%  Similarity=-0.021  Sum_probs=78.0

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC-CCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN-DNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ..+|||+|||+|.++..+++.+|..+|+++|+|+.+++.++++...... ...++.+...|.... +++++||+|+||--
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP  307 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP  307 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence            4689999999999999999988889999999999999999988754211 123578888885432 24468999999977


Q ss_pred             ccCcC-----ChHHHHHHHHhccCCC
Q 029554          171 LHWTN-----DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~-----d~~~~l~~i~r~Lkpg  191 (191)
                      +|...     ....++.++.++|+||
T Consensus       308 fh~~~~~~~~ia~~l~~~a~~~LkpG  333 (378)
T PRK15001        308 FHQQHALTDNVAWEMFHHARRCLKIN  333 (378)
T ss_pred             cccCccCCHHHHHHHHHHHHHhcccC
Confidence            77542     2357889999999996

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.47  E-value=8.3e-13  Score=101.76  Aligned_cols=107  Identities=11%  Similarity=-0.057  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~  153 (191)
                      ..+...+++.+.  ..++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++..  ....++.++.+|..
T Consensus        63 p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~--~g~~~v~~~~~d~~  138 (215)
T TIGR00080        63 PHMVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK--LGLDNVIVIVGDGT  138 (215)
T ss_pred             HHHHHHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--CCCCCeEEEECCcc
Confidence            334456666655  45778999999999999999987652 35699999999999999998865  23356889999976


Q ss_pred             CCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          154 FLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       154 ~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ......++||+|++..+..++.      ..+.+.|+||
T Consensus       139 ~~~~~~~~fD~Ii~~~~~~~~~------~~~~~~L~~g  170 (215)
T TIGR00080       139 QGWEPLAPYDRIYVTAAGPKIP------EALIDQLKEG  170 (215)
T ss_pred             cCCcccCCCCEEEEcCCccccc------HHHHHhcCcC
Confidence            5443456899999987766553      4567788886

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.46  E-value=1.4e-14  Score=109.81  Aligned_cols=127  Identities=20%  Similarity=0.210  Sum_probs=93.2

Q ss_pred             HHHHHHHHHhhhhcCC-----CchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHH
Q 029554           54 HLKRKQRDRAAWLTRP-----NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDML  128 (191)
Q Consensus        54 ~~~~~~~~~~a~~y~~-----~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l  128 (191)
                      .++..-||..++.|+.     ..|.-.+...+++..+.  ..++.++||+|||||..+..|....  .+++|+|+|+.|+
T Consensus        85 aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl  160 (287)
T COG4976          85 AYVETLFDQYAERFDHILVDKLGYSVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENML  160 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHH
Confidence            3556666776665554     34444444555555554  4458899999999999999999887  8999999999999


Q ss_pred             HHHHHhhhhccCCCCceeeEecCCC-CCC-CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          129 KLCKDAQQDAHNDNIETCFVVGDEE-FLP-LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       129 ~~a~~~~~~~~~~~~~~~~~~~d~~-~l~-~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +.+.++--.       -...+.+.. .++ ..+..||+|++.-++.|+.++..++.-+...|+||
T Consensus       161 ~kA~eKg~Y-------D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~g  218 (287)
T COG4976         161 AKAHEKGLY-------DTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPG  218 (287)
T ss_pred             HHHHhccch-------HHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCC
Confidence            999876421       111222222 222 34567999999999999999999999999999986

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.46  E-value=6.3e-13  Score=105.39  Aligned_cols=108  Identities=19%  Similarity=0.065  Sum_probs=82.2

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK  158 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~  158 (191)
                      +++...+.  .-.+.+|||||||.|+.+..+...+ ...|+|+|++.....+.+-...- .+....+......++.+|. 
T Consensus       105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~-lg~~~~~~~lplgvE~Lp~-  179 (315)
T PF08003_consen  105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHF-LGQDPPVFELPLGVEDLPN-  179 (315)
T ss_pred             HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHH-hCCCccEEEcCcchhhccc-
Confidence            34555554  3467899999999999999888877 36799999999877665332211 1112233444456888886 


Q ss_pred             CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .+.||+|+|..+|+|..|+-..|.+++..|+||
T Consensus       180 ~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~g  212 (315)
T PF08003_consen  180 LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPG  212 (315)
T ss_pred             cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCC
Confidence            789999999999999999999999999999986

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.44  E-value=1.7e-12  Score=105.10  Aligned_cols=98  Identities=9%  Similarity=-0.012  Sum_probs=80.9

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .+..+|||||||+|..+..+.+.+|..+++++|. +.+++.++++.... +...++.++.+|+...++++  +|+|++..
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-gl~~rv~~~~~d~~~~~~~~--~D~v~~~~  223 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK-GVADRMRGIAVDIYKESYPE--ADAVLFCR  223 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC-CccceEEEEecCccCCCCCC--CCEEEeEh
Confidence            3567999999999999999999988889999997 78999998877541 23456899999987655543  69999999


Q ss_pred             cccCcCCh--HHHHHHHHhccCCC
Q 029554          170 GLHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      ++|++++.  ..+++++.++|+||
T Consensus       224 ~lh~~~~~~~~~il~~~~~~L~pg  247 (306)
T TIGR02716       224 ILYSANEQLSTIMCKKAFDAMRSG  247 (306)
T ss_pred             hhhcCChHHHHHHHHHHHHhcCCC
Confidence            99988654  57899999999997

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.42  E-value=2.5e-12  Score=99.27  Aligned_cols=99  Identities=13%  Similarity=-0.035  Sum_probs=78.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhc----------cCCCCceeeEecCCCCCCCC-C
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA----------HNDNIETCFVVGDEEFLPLK-E  159 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~----------~~~~~~~~~~~~d~~~l~~~-~  159 (191)
                      ++.+|||+|||.|..+..|++.+  .+|+|+|+|+..++.+.++....          .....++.+.++|+..++.. .
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~  114 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQG--HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL  114 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhCC--CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence            56799999999999999999988  89999999999999875322100          01234688899998877533 2


Q ss_pred             CCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          160 SSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       160 ~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      +.||+|+-..+++|++  .....+..+.++|+||
T Consensus       115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg  148 (218)
T PRK13255        115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAG  148 (218)
T ss_pred             CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence            5799999999999985  3467899999999997

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=6.3e-13  Score=105.39  Aligned_cols=118  Identities=19%  Similarity=0.169  Sum_probs=85.7

Q ss_pred             CCCchHHHHH--HHHH-HHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCc
Q 029554           68 RPNDSFVDAV--AENL-LDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE  144 (191)
Q Consensus        68 ~~~~~~~~~~--~~~l-~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~  144 (191)
                      +...|.++.+  ++++ ++.++  .....+|||+|||.|.++..+++..|..+++++|+|...++.++++...  |...+
T Consensus       134 ~pGVFS~~~lD~GS~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~--N~~~~  209 (300)
T COG2813         134 LPGVFSRDKLDKGSRLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA--NGVEN  209 (300)
T ss_pred             CCCCCcCCCcChHHHHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH--cCCCc
Confidence            3345555444  4444 44444  3345599999999999999999999999999999999999999998875  44444


Q ss_pred             eeeEecCCCCCCCCCCCcceEEeCCcccCcCCh-----HHHHHHHHhccCCC
Q 029554          145 TCFVVGDEEFLPLKESSLDLAISCLGLHWTNDL-----PGAMIQVSIFLLPD  191 (191)
Q Consensus       145 ~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~-----~~~l~~i~r~Lkpg  191 (191)
                      ..+...|.-. +.++ +||+||||=-+|--.+.     ..++.+..+.|++|
T Consensus       210 ~~v~~s~~~~-~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~g  259 (300)
T COG2813         210 TEVWASNLYE-PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPG  259 (300)
T ss_pred             cEEEEecccc-cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccC
Confidence            4455555332 2233 89999999888854332     26888999999886

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.41  E-value=4.7e-12  Score=97.31  Aligned_cols=106  Identities=10%  Similarity=-0.084  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~  153 (191)
                      ...+...++..+.  ..++.+|||+|||+|..+..++...  .+++++|+++.+++.+++++..  ....++.+..+|..
T Consensus        63 ~p~~~~~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~--~~~~~v~~~~~d~~  136 (212)
T PRK00312         63 QPYMVARMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQ--LGLHNVSVRHGDGW  136 (212)
T ss_pred             cHHHHHHHHHhcC--CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHH--CCCCceEEEECCcc
Confidence            3444455555554  4567899999999999998887765  5899999999999999988765  23345888888865


Q ss_pred             CCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          154 FLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       154 ~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ....+.++||+|++..+++++      ..++.+.|+||
T Consensus       137 ~~~~~~~~fD~I~~~~~~~~~------~~~l~~~L~~g  168 (212)
T PRK00312        137 KGWPAYAPFDRILVTAAAPEI------PRALLEQLKEG  168 (212)
T ss_pred             cCCCcCCCcCEEEEccCchhh------hHHHHHhcCCC
Confidence            432234789999998877655      34567888886

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.41  E-value=4.9e-12  Score=96.28  Aligned_cols=112  Identities=13%  Similarity=0.073  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC
Q 029554           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE  152 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~  152 (191)
                      +.++....+..+.  ..++.+|||+|||+|.++..++.. ++..+|+++|+++.+++.++++.... +...++.++.+|.
T Consensus        25 ~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~-g~~~~v~~~~~d~  101 (198)
T PRK00377         25 KEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF-GVLNNIVLIKGEA  101 (198)
T ss_pred             HHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-CCCCCeEEEEech
Confidence            3444333333443  457789999999999999887654 44578999999999999999887651 1135678888887


Q ss_pred             CC-CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          153 EF-LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       153 ~~-l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .. ++...+.||.|+++..   ..++..++.++.++|+||
T Consensus       102 ~~~l~~~~~~~D~V~~~~~---~~~~~~~l~~~~~~Lkpg  138 (198)
T PRK00377        102 PEILFTINEKFDRIFIGGG---SEKLKEIISASWEIIKKG  138 (198)
T ss_pred             hhhHhhcCCCCCEEEECCC---cccHHHHHHHHHHHcCCC
Confidence            64 3323468999999753   347788999999999996

>TIGR03438 probable methyltransferase

Probab=99.39  E-value=6e-12  Score=101.71  Aligned_cols=100  Identities=17%  Similarity=0.047  Sum_probs=75.2

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCCCCC----Ccce
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKES----SLDL  164 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~~~~----~fDl  164 (191)
                      ++.+|||+|||+|..+..|.+..+ ..+|+++|+|+.|++.++++.... ....++.++++|+.. ++++..    ...+
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~  141 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-YPQLEVHGICADFTQPLALPPEPAAGRRLG  141 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-CCCceEEEEEEcccchhhhhcccccCCeEE
Confidence            557899999999999999987754 478999999999999999886531 123457778899764 443322    2334


Q ss_pred             EEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          165 AISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       165 Vis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      +++..++++++  +...+++++.++|+||
T Consensus       142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pg  170 (301)
T TIGR03438       142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPG  170 (301)
T ss_pred             EEecccccCCCHHHHHHHHHHHHHhcCCC
Confidence            55556788775  4567899999999997

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.39  E-value=2.6e-12  Score=98.63  Aligned_cols=89  Identities=17%  Similarity=0.066  Sum_probs=70.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--------CCCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LKES  160 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--------~~~~  160 (191)
                      .++.+|||+|||+|.++..+++.. +...|+++|+++ |.            ...++.++++|+...+        +.++
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~------------~~~~v~~i~~D~~~~~~~~~i~~~~~~~  116 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD------------PIVGVDFLQGDFRDELVLKALLERVGDS  116 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc------------CCCCcEEEecCCCChHHHHHHHHHhCCC
Confidence            467799999999999999888764 446999999998 21            1234788999987643        5678


Q ss_pred             CcceEEeCCcccCcCCh-----------HHHHHHHHhccCCC
Q 029554          161 SLDLAISCLGLHWTNDL-----------PGAMIQVSIFLLPD  191 (191)
Q Consensus       161 ~fDlVis~~~l~~~~d~-----------~~~l~~i~r~Lkpg  191 (191)
                      +||+|+|+.+.++..++           ..++.++.++||||
T Consensus       117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG  158 (209)
T PRK11188        117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG  158 (209)
T ss_pred             CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999988886543           35789999999997

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.37  E-value=8.3e-12  Score=100.30  Aligned_cols=96  Identities=10%  Similarity=-0.012  Sum_probs=72.5

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.++++... .+....+.+...+..  +..+++||+|++|
T Consensus       157 ~~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~-n~~~~~~~~~~~~~~--~~~~~~fDlVvan  232 (288)
T TIGR00406       157 DLKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAEL-NQVSDRLQVKLIYLE--QPIEGKADVIVAN  232 (288)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHH-cCCCcceEEEecccc--cccCCCceEEEEe
Confidence            3467899999999999998887765 46899999999999999988764 122233455555532  2345789999998


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ...+   ....++.++.++||||
T Consensus       233 ~~~~---~l~~ll~~~~~~Lkpg  252 (288)
T TIGR00406       233 ILAE---VIKELYPQFSRLVKPG  252 (288)
T ss_pred             cCHH---HHHHHHHHHHHHcCCC
Confidence            7654   3467899999999996

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.36  E-value=1.6e-11  Score=93.34  Aligned_cols=112  Identities=11%  Similarity=0.017  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC
Q 029554           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD  151 (191)
Q Consensus        72 ~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d  151 (191)
                      ..+.++...++..+.  ..++.+|||+|||+|.++..++...+..+|+++|+|+.+++.++++...  ....+++++.+|
T Consensus        23 ~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~--~~~~~v~~~~~d   98 (196)
T PRK07402         23 LTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR--FGVKNVEVIEGS   98 (196)
T ss_pred             CCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--hCCCCeEEEECc
Confidence            344555545555554  3467899999999999999887766668999999999999999988764  223468888888


Q ss_pred             CCC-CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          152 EEF-LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       152 ~~~-l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +.. ++.....+|.|+...    ..+...++.++.++|+||
T Consensus        99 ~~~~~~~~~~~~d~v~~~~----~~~~~~~l~~~~~~Lkpg  135 (196)
T PRK07402         99 APECLAQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPG  135 (196)
T ss_pred             hHHHHhhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCC
Confidence            653 222223467765532    235678999999999997

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.35  E-value=1.4e-11  Score=96.60  Aligned_cols=98  Identities=18%  Similarity=0.094  Sum_probs=75.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ...+|||+|||+|..+..++...+..+++++|+|+.+++.+++....  ....++.+..+|... ++++++||+|++|--
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npP  163 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR--LGLDNVTFLQSDWFE-PLPGGKFDLIVSNPP  163 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--cCCCeEEEEECchhc-cCcCCceeEEEECCC
Confidence            44589999999999999999887778999999999999999988764  233468889999755 345688999999754


Q ss_pred             ccCcC--------------------------ChHHHHHHHHhccCCC
Q 029554          171 LHWTN--------------------------DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~--------------------------d~~~~l~~i~r~Lkpg  191 (191)
                      .....                          ....++.++.++|+||
T Consensus       164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~g  210 (251)
T TIGR03534       164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPG  210 (251)
T ss_pred             CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccC
Confidence            32111                          1235678899999986

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.34  E-value=1.2e-11  Score=82.60  Aligned_cols=95  Identities=27%  Similarity=0.261  Sum_probs=77.6

Q ss_pred             eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC-CCCCcceEEeCCccc
Q 029554           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-KESSLDLAISCLGLH  172 (191)
Q Consensus        94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~fDlVis~~~l~  172 (191)
                      +|||+|||.|..+..+.. .+..+++++|+++..+..+++....  ....++.+...|...... ..++||+|+++..++
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~   77 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAA--LLADNVEVLKGDAEELPPEADESFDVIISDPPLH   77 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhc--ccccceEEEEcChhhhccccCCceEEEEEcccee
Confidence            489999999999998887 4468999999999999988743322  344568888888776543 457899999999999


Q ss_pred             C-cCChHHHHHHHHhccCCC
Q 029554          173 W-TNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       173 ~-~~d~~~~l~~i~r~Lkpg  191 (191)
                      + ..+....+..+.++|+||
T Consensus        78 ~~~~~~~~~l~~~~~~l~~~   97 (107)
T cd02440          78 HLVEDLARFLEEARRLLKPG   97 (107)
T ss_pred             ehhhHHHHHHHHHHHHcCCC
Confidence            8 778889999999999986

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK14967 putative methyltransferase; Provisional

Probab=99.34  E-value=2.1e-11  Score=94.50  Aligned_cols=97  Identities=13%  Similarity=0.023  Sum_probs=73.0

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..++..+ ..+++++|+|+.+++.++++...   ...++.++.+|+... +++++||+|+++-
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~---~~~~~~~~~~d~~~~-~~~~~fD~Vi~np  109 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALL---AGVDVDVRRGDWARA-VEFRPFDVVVSNP  109 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHH---hCCeeEEEECchhhh-ccCCCeeEEEECC
Confidence            356799999999999999888764 35999999999999999887754   223477788886543 3567899999985


Q ss_pred             cccCcCC---------------------hHHHHHHHHhccCCC
Q 029554          170 GLHWTND---------------------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d---------------------~~~~l~~i~r~Lkpg  191 (191)
                      -.....+                     ...++.++.++||||
T Consensus       110 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g  152 (223)
T PRK14967        110 PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG  152 (223)
T ss_pred             CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC
Confidence            4322111                     345788899999986

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.34  E-value=3.1e-12  Score=94.24  Aligned_cols=73  Identities=22%  Similarity=0.194  Sum_probs=63.1

Q ss_pred             EEEECChhHHHHHHHhhhhcc-CCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          119 IMMDTSYDMLKLCKDAQQDAH-NDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       119 ~~vD~s~~~l~~a~~~~~~~~-~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +|+|+|++|++.|+++..... ....++.++++|.+.+|+++++||+|++.+++||++|+..+++++.|+||||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG   74 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG   74 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence            489999999999987654200 1124689999999999999999999999999999999999999999999997

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.33  E-value=3.5e-11  Score=100.08  Aligned_cols=76  Identities=17%  Similarity=0.016  Sum_probs=61.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC-CCCCcceEEeCC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-KESSLDLAISCL  169 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~fDlVis~~  169 (191)
                      +..+|||+|||+|.++..++...+..+++++|+|+.+++.++++...   ...++.++++|+....+ ..++||+|+||-
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~---~g~rV~fi~gDl~e~~l~~~~~FDLIVSNP  327 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD---LGARVEFAHGSWFDTDMPSEGKWDIIVSNP  327 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH---cCCcEEEEEcchhccccccCCCccEEEECC
Confidence            44689999999999999988776778999999999999999998764   22368899999754322 246799999975

>PRK14968 putative methyltransferase; Provisional

Probab=99.33  E-value=2.1e-11  Score=91.50  Aligned_cols=99  Identities=16%  Similarity=0.094  Sum_probs=73.9

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..++..+  .+++++|+|+.+++.++++..........+.++..|... ++.+.+||+|+++.
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~   98 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNP   98 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECC
Confidence            356789999999999999998875  899999999999999988775421111126777888554 23445899999986


Q ss_pred             cccCcC---------------------ChHHHHHHHHhccCCC
Q 029554          170 GLHWTN---------------------DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~---------------------d~~~~l~~i~r~Lkpg  191 (191)
                      .+.+..                     .+..++.++.++||||
T Consensus        99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g  141 (188)
T PRK14968         99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG  141 (188)
T ss_pred             CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC
Confidence            543311                     1356789999999986

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.32  E-value=2.2e-11  Score=99.61  Aligned_cols=113  Identities=13%  Similarity=0.019  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC
Q 029554           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE  152 (191)
Q Consensus        73 ~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~  152 (191)
                      +...++..++....  ..++.+|||+|||+|.++..++..+  .+++|+|+++.|+..+++++..  ....++.+..+|+
T Consensus       166 l~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~~--~~v~g~Di~~~~~~~a~~nl~~--~g~~~i~~~~~D~  239 (329)
T TIGR01177       166 MDPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLMG--AKVIGCDIDWKMVAGARINLEH--YGIEDFFVKRGDA  239 (329)
T ss_pred             CCHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHhC--CeEEEEcCCHHHHHHHHHHHHH--hCCCCCeEEecch
Confidence            44455555554433  3467799999999999987776655  8999999999999999988765  2223378889999


Q ss_pred             CCCCCCCCCcceEEeCCccc------C--cCC-hHHHHHHHHhccCCC
Q 029554          153 EFLPLKESSLDLAISCLGLH------W--TND-LPGAMIQVSIFLLPD  191 (191)
Q Consensus       153 ~~l~~~~~~fDlVis~~~l~------~--~~d-~~~~l~~i~r~Lkpg  191 (191)
                      ..+++++++||+|+++--..      .  ..+ ...++.++.++|+||
T Consensus       240 ~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~g  287 (329)
T TIGR01177       240 TKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSE  287 (329)
T ss_pred             hcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCC
Confidence            98888788999999973211      1  111 467899999999986

This family is found exclusively in the Archaea.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.32  E-value=3.6e-11  Score=96.42  Aligned_cols=97  Identities=18%  Similarity=0.161  Sum_probs=73.8

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC---
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL---  169 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~---  169 (191)
                      .+|||+|||+|.++..++..++..+++++|+|+.+++.++++.... ....++.++.+|+.. ++++.+||+|++|-   
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~-~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi  193 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKN-QLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI  193 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence            6899999999999999998877789999999999999999887641 122348899999654 23445899999972   


Q ss_pred             ----------cccCcC------------ChHHHHHHHHhccCCC
Q 029554          170 ----------GLHWTN------------DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ----------~l~~~~------------d~~~~l~~i~r~Lkpg  191 (191)
                                +++|-+            ....++.++.++|+||
T Consensus       194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~g  237 (284)
T TIGR00536       194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPN  237 (284)
T ss_pred             CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCC
Confidence                      222221            2446788888899886

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.32  E-value=2.3e-11  Score=95.87  Aligned_cols=96  Identities=16%  Similarity=0.172  Sum_probs=68.5

Q ss_pred             HHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC-CceeeEecCCCCCCCCCC
Q 029554           82 LDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKES  160 (191)
Q Consensus        82 ~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~d~~~l~~~~~  160 (191)
                      +..+.....++.+|||+|||+|.++..+...+ ..+|+++|+|+.+++.++++...  +.. ..+.+..+        +.
T Consensus       110 l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~--~~~~~~~~~~~~--------~~  178 (250)
T PRK00517        110 LEALEKLVLPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAEL--NGVELNVYLPQG--------DL  178 (250)
T ss_pred             HHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHH--cCCCceEEEccC--------CC
Confidence            33333323467899999999999998887765 34699999999999999988754  221 12222211        22


Q ss_pred             CcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          161 SLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       161 ~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +||+|++|...+   ....++.++.++||||
T Consensus       179 ~fD~Vvani~~~---~~~~l~~~~~~~Lkpg  206 (250)
T PRK00517        179 KADVIVANILAN---PLLELAPDLARLLKPG  206 (250)
T ss_pred             CcCEEEEcCcHH---HHHHHHHHHHHhcCCC
Confidence            799999986543   2467889999999996

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.31  E-value=1.6e-11  Score=91.17  Aligned_cols=85  Identities=12%  Similarity=0.094  Sum_probs=69.5

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE  159 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~  159 (191)
                      .+++.+.  ..++.+|||+|||+|.++..+++++  .+++++|+++.+++.++++...    ..++.++.+|+..+++++
T Consensus         4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~~----~~~v~ii~~D~~~~~~~~   75 (169)
T smart00650        4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFAA----ADNLTVIHGDALKFDLPK   75 (169)
T ss_pred             HHHHhcC--CCCcCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhcc----CCCEEEEECchhcCCccc
Confidence            4444444  3456789999999999999999875  8999999999999999887642    346889999999888777


Q ss_pred             CCcceEEeCCccc
Q 029554          160 SSLDLAISCLGLH  172 (191)
Q Consensus       160 ~~fDlVis~~~l~  172 (191)
                      ..||.|++|.-.+
T Consensus        76 ~~~d~vi~n~Py~   88 (169)
T smart00650       76 LQPYKVVGNLPYN   88 (169)
T ss_pred             cCCCEEEECCCcc
Confidence            7799999987655

>PRK04266 fibrillarin; Provisional

Probab=99.31  E-value=2.4e-11  Score=94.27  Aligned_cols=96  Identities=9%  Similarity=0.017  Sum_probs=71.5

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC----CCCCCCCcce
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPLKESSLDL  164 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~----l~~~~~~fDl  164 (191)
                      ..++.+|||+|||+|.++..+++..+...|+++|+++.|++.+.+++..    ..++.++.+|...    .++. .+||+
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~----~~nv~~i~~D~~~~~~~~~l~-~~~D~  144 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE----RKNIIPILADARKPERYAHVV-EKVDV  144 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh----cCCcEEEECCCCCcchhhhcc-ccCCE
Confidence            3477899999999999999998875446899999999999988766543    2457888888753    1223 46999


Q ss_pred             EEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          165 AISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       165 Vis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |++.....|  ....++.++.++||||
T Consensus       145 i~~d~~~p~--~~~~~L~~~~r~LKpG  169 (226)
T PRK04266        145 IYQDVAQPN--QAEIAIDNAEFFLKDG  169 (226)
T ss_pred             EEECCCChh--HHHHHHHHHHHhcCCC
Confidence            996543211  1234689999999997

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.30  E-value=2.4e-11  Score=89.37  Aligned_cols=98  Identities=20%  Similarity=0.085  Sum_probs=76.8

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC-CceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ..+|||+|||+|.+...|++.+-...++|+|.|+..++.|+..++.  ... ..+.|.+.|+....+..++||+|.--..
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~--~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT  145 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAER--DGFSNEIRFQQLDITDPDFLSGQFDLVLDKGT  145 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHh--cCCCcceeEEEeeccCCcccccceeEEeecCc
Confidence            3489999999999999999876445699999999999999887765  233 3499999998877778899999987665


Q ss_pred             ccCc---C-----ChHHHHHHHHhccCCC
Q 029554          171 LHWT---N-----DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~---~-----d~~~~l~~i~r~Lkpg  191 (191)
                      +.-+   +     .+...+..+.+.|+||
T Consensus       146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~  174 (227)
T KOG1271|consen  146 LDAISLSPDGPVGRLVVYLDSVEKLLSPG  174 (227)
T ss_pred             eeeeecCCCCcccceeeehhhHhhccCCC
Confidence            5443   1     2344677788888876

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.30  E-value=3.6e-12  Score=88.57  Aligned_cols=98  Identities=16%  Similarity=0.140  Sum_probs=76.4

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceEEeCC
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLAISCL  169 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlVis~~  169 (191)
                      +.+|||+|||+|.++..+.+.+ ..+++++|+++..++.++.++.. .....++.++++|.....  +++++||+|++|-
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np   78 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPR-NGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP   78 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHH-CTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHH-ccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence            3579999999999999998887 78999999999999999988865 123356899999976543  6778999999986


Q ss_pred             cccCcC--------ChHHHHHHHHhccCCC
Q 029554          170 GLHWTN--------DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~--------d~~~~l~~i~r~Lkpg  191 (191)
                      -.....        ....+++++.++||||
T Consensus        79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~g  108 (117)
T PF13659_consen   79 PYGPRSGDKAALRRLYSRFLEAAARLLKPG  108 (117)
T ss_dssp             STTSBTT----GGCHHHHHHHHHHHHEEEE
T ss_pred             CCccccccchhhHHHHHHHHHHHHHHcCCC
Confidence            654321        2357899999999885

...

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.30  E-value=2.2e-11  Score=98.88  Aligned_cols=104  Identities=13%  Similarity=0.078  Sum_probs=76.7

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~  156 (191)
                      ...+++.+.  ..++.+|||+|||+|.++..+++..+ ...|+++|+++.+++.++++...  ....++.++.+|.....
T Consensus        69 ~a~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~--~g~~nV~~i~gD~~~~~  144 (322)
T PRK13943         69 MALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR--LGIENVIFVCGDGYYGV  144 (322)
T ss_pred             HHHHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH--cCCCcEEEEeCChhhcc
Confidence            334444443  34678999999999999999987653 24799999999999999988765  23456888888876554


Q ss_pred             CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          157 LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ...++||+|++..++..++      ..+.+.|+||
T Consensus       145 ~~~~~fD~Ii~~~g~~~ip------~~~~~~Lkpg  173 (322)
T PRK13943        145 PEFAPYDVIFVTVGVDEVP------ETWFTQLKEG  173 (322)
T ss_pred             cccCCccEEEECCchHHhH------HHHHHhcCCC
Confidence            4556899999987766442      3456677775

>PTZ00146 fibrillarin; Provisional

Probab=99.26  E-value=5.1e-11  Score=94.88  Aligned_cols=120  Identities=10%  Similarity=0.074  Sum_probs=86.0

Q ss_pred             hcCCCchHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCC
Q 029554           66 LTRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI  143 (191)
Q Consensus        66 ~y~~~~~~~~~~~~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~  143 (191)
                      .|+.++..+.-++..++.-+..+ ..++.+|||+|||+|.++..+++.. +...|+++|+|+.|++...+....    ..
T Consensus       106 eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~----r~  181 (293)
T PTZ00146        106 EYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK----RP  181 (293)
T ss_pred             eeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh----cC
Confidence            47888888888877776665544 3577799999999999999998864 346899999999866544443321    14


Q ss_pred             ceeeEecCCCC---CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          144 ETCFVVGDEEF---LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       144 ~~~~~~~d~~~---l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++.++..|+..   .....++||+|++...  ..++...++.++.++||||
T Consensus       182 NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpG  230 (293)
T PTZ00146        182 NIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNG  230 (293)
T ss_pred             CCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCC
Confidence            57788888653   2223357999999875  2333445667899999996

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.25  E-value=1.8e-10  Score=92.36  Aligned_cols=76  Identities=14%  Similarity=-0.009  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      +..+|||+|||+|.++..++..++..+++++|+|+.+++.++++.... +...++.++.+|+.. ++++++||+|++|
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~-~~~~~i~~~~~D~~~-~~~~~~fD~Iv~N  196 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH-GLEDRVTLIQSDLFA-ALPGRKYDLIVSN  196 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEECchhh-ccCCCCccEEEEC
Confidence            456899999999999999998877789999999999999999987651 122468899999643 2245689999997

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.24  E-value=1.1e-10  Score=94.55  Aligned_cols=97  Identities=13%  Similarity=0.015  Sum_probs=73.6

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc--
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG--  170 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~--  170 (191)
                      .+|||+|||+|.++..++..++..+++++|+|+.+++.++++.... +...++.++.+|+... +++++||+|++|--  
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~-~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi  212 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH-GLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYV  212 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCCcEEEEECchhhh-CCCCCccEEEECCCCC
Confidence            6899999999999999998877789999999999999999987641 1224588999996432 23468999999721  


Q ss_pred             -----------ccCcCC------------hHHHHHHHHhccCCC
Q 029554          171 -----------LHWTND------------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 -----------l~~~~d------------~~~~l~~i~r~Lkpg  191 (191)
                                 ++|-+.            ...++.++.++|+||
T Consensus       213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pg  256 (307)
T PRK11805        213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTED  256 (307)
T ss_pred             CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCC
Confidence                       111111            246788888999986

>PRK00811 spermidine synthase; Provisional

Probab=99.24  E-value=1e-10  Score=93.74  Aligned_cols=101  Identities=17%  Similarity=0.176  Sum_probs=78.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC---CCCceeeEecCCCC-CCCCCCCcceEE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN---DNIETCFVVGDEEF-LPLKESSLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~---~~~~~~~~~~d~~~-l~~~~~~fDlVi  166 (191)
                      .+.+||++|||+|..+..+.+..+..+|+++|+++.+++.|++.+.....   ...++.++.+|... +...+++||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            45689999999999999988765568999999999999999987754221   24578899999653 333467899999


Q ss_pred             eCCcccCcCC----hHHHHHHHHhccCCC
Q 029554          167 SCLGLHWTND----LPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~~~d----~~~~l~~i~r~Lkpg  191 (191)
                      +...-.+...    ...+++.+.++|+||
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~g  184 (283)
T PRK00811        156 VDSTDPVGPAEGLFTKEFYENCKRALKED  184 (283)
T ss_pred             ECCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence            9765544322    256789999999986

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.24  E-value=1.3e-10  Score=89.72  Aligned_cols=99  Identities=10%  Similarity=-0.120  Sum_probs=79.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh----------ccCCCCceeeEecCCCCCCCC--
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD----------AHNDNIETCFVVGDEEFLPLK--  158 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~----------~~~~~~~~~~~~~d~~~l~~~--  158 (191)
                      ++.+||..|||.|....+|++.|  .+|+|+|+|+..++.+.+....          .......+.+.++|+-.++..  
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~  120 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN  120 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence            46799999999999999999988  8899999999999998663210          001245789999998887632  


Q ss_pred             -CCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          159 -ESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 -~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                       .+.||+|+-..++++++  ......+.+.++|+||
T Consensus       121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg  156 (226)
T PRK13256        121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN  156 (226)
T ss_pred             ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC
Confidence             26899999999999985  3467899999999996

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.23  E-value=8e-11  Score=91.58  Aligned_cols=109  Identities=18%  Similarity=0.122  Sum_probs=82.3

Q ss_pred             HHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CC
Q 029554           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LK  158 (191)
Q Consensus        81 l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~  158 (191)
                      |+....... ...+|||+|||+|.++..++++.+..++++||+.+.+.+.|++.... +....++++++.|+..+.  ..
T Consensus        35 LL~~~~~~~-~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l-n~l~~ri~v~~~Di~~~~~~~~  112 (248)
T COG4123          35 LLAAFAPVP-KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL-NPLEERIQVIEADIKEFLKALV  112 (248)
T ss_pred             HHHhhcccc-cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh-CcchhceeEehhhHHHhhhccc
Confidence            343444323 37799999999999999999997779999999999999999988765 334567999999988653  34


Q ss_pred             CCCcceEEeCCcccC----------------c--CChHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHW----------------T--NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~----------------~--~d~~~~l~~i~r~Lkpg  191 (191)
                      ..+||+|+||=-..-                .  -+.+..++...++||||
T Consensus       113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~  163 (248)
T COG4123         113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG  163 (248)
T ss_pred             ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCC
Confidence            457999999732211                1  24567777788888875

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=1.7e-10  Score=87.38  Aligned_cols=95  Identities=14%  Similarity=0.094  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~  153 (191)
                      ...+..++++.|.  ..++.+|||||||+|+.+..|++..  .+|+.+|..+...+.|++++..  -...++.+.++|-.
T Consensus        57 ~P~~vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~--lg~~nV~v~~gDG~  130 (209)
T COG2518          57 APHMVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLET--LGYENVTVRHGDGS  130 (209)
T ss_pred             CcHHHHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHH--cCCCceEEEECCcc
Confidence            3445667777777  6688999999999999999999987  6999999999999999999876  34456999999955


Q ss_pred             -CCCCCCCCcceEEeCCcccCcC
Q 029554          154 -FLPLKESSLDLAISCLGLHWTN  175 (191)
Q Consensus       154 -~l~~~~~~fDlVis~~~l~~~~  175 (191)
                       .++ +.++||.|+.+.+...++
T Consensus       131 ~G~~-~~aPyD~I~Vtaaa~~vP  152 (209)
T COG2518         131 KGWP-EEAPYDRIIVTAAAPEVP  152 (209)
T ss_pred             cCCC-CCCCcCEEEEeeccCCCC
Confidence             454 568999999998877664

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.22  E-value=1.5e-10  Score=92.16  Aligned_cols=77  Identities=21%  Similarity=0.141  Sum_probs=62.5

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .+..+|||+|||+|.++..++...+..+++++|+|+.+++.++++...  ....++.++.+|.... +++++||+|++|-
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~--~~~~~i~~~~~d~~~~-~~~~~fD~Iv~np  183 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH--GLGARVEFLQGDWFEP-LPGGRFDLIVSNP  183 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh--CCCCcEEEEEccccCc-CCCCceeEEEECC
Confidence            356789999999999999999887778999999999999999988752  2344688898886432 2357899999973

>PHA03411 putative methyltransferase; Provisional

Probab=99.22  E-value=1.8e-10  Score=90.97  Aligned_cols=77  Identities=14%  Similarity=0.121  Sum_probs=63.0

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      ....+|||+|||+|.++..+..+.+..+++++|+|+.|++.++++..       ++.++++|+..+. .+.+||+|++|-
T Consensus        63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-------~v~~v~~D~~e~~-~~~kFDlIIsNP  134 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-------EAEWITSDVFEFE-SNEKFDVVISNP  134 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-------CCEEEECchhhhc-ccCCCcEEEEcC
Confidence            34578999999999999888776545799999999999999987642       3788999987765 346899999998


Q ss_pred             cccCc
Q 029554          170 GLHWT  174 (191)
Q Consensus       170 ~l~~~  174 (191)
                      .+++.
T Consensus       135 PF~~l  139 (279)
T PHA03411        135 PFGKI  139 (279)
T ss_pred             Ccccc
Confidence            88775

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.21  E-value=4.6e-10  Score=83.35  Aligned_cols=110  Identities=15%  Similarity=0.097  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC
Q 029554           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE  152 (191)
Q Consensus        73 ~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~  152 (191)
                      -++++..-.+..|.  ..++.+++|||||+|..+..++..+|..+++++|-++++++..+++....  ..+++.++.++.
T Consensus        18 TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f--g~~n~~vv~g~A   93 (187)
T COG2242          18 TKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF--GVDNLEVVEGDA   93 (187)
T ss_pred             cHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh--CCCcEEEEeccc
Confidence            45566555566666  67889999999999999999997788899999999999999999888763  477899999996


Q ss_pred             C-CCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          153 E-FLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       153 ~-~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      - .++-. .++|.|+...+ .   ..+.++..+...||||
T Consensus        94 p~~L~~~-~~~daiFIGGg-~---~i~~ile~~~~~l~~g  128 (187)
T COG2242          94 PEALPDL-PSPDAIFIGGG-G---NIEEILEAAWERLKPG  128 (187)
T ss_pred             hHhhcCC-CCCCEEEECCC-C---CHHHHHHHHHHHcCcC
Confidence            4 44422 27999999988 3   5688888888888886

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=1.3e-10  Score=92.78  Aligned_cols=95  Identities=15%  Similarity=0.066  Sum_probs=69.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCc-eeeEecCCCCCCCCCCCcceEEeC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE-TCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~-~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      .++.+|||+|||+|.++...++.| ..+++|+|++|..++.++++...  |.... ......+....+ ..++||+||+|
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~--N~v~~~~~~~~~~~~~~~-~~~~~DvIVAN  236 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARL--NGVELLVQAKGFLLLEVP-ENGPFDVIVAN  236 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHH--cCCchhhhcccccchhhc-ccCcccEEEeh
Confidence            478899999999999999998876 46799999999999999998865  33222 222222222222 33689999998


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      - |-.+  +..+..++.+.||||
T Consensus       237 I-LA~v--l~~La~~~~~~lkpg  256 (300)
T COG2264         237 I-LAEV--LVELAPDIKRLLKPG  256 (300)
T ss_pred             h-hHHH--HHHHHHHHHHHcCCC
Confidence            6 3322  357788889999986

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.20  E-value=7.6e-11  Score=90.29  Aligned_cols=98  Identities=15%  Similarity=0.114  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC
Q 029554           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD  151 (191)
Q Consensus        73 ~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d  151 (191)
                      ....+..++++.+.  .+++.+|||||||+|+.+..|+.. ++...|+++|..+.+.+.|++++..  ....++.++.+|
T Consensus        56 s~P~~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~--~~~~nv~~~~gd  131 (209)
T PF01135_consen   56 SAPSMVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLAR--LGIDNVEVVVGD  131 (209)
T ss_dssp             --HHHHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH--HTTHSEEEEES-
T ss_pred             hHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHH--hccCceeEEEcc
Confidence            44556667777776  568899999999999999999876 3445799999999999999999875  234478999999


Q ss_pred             CCCCCCCCCCcceEEeCCcccCc
Q 029554          152 EEFLPLKESSLDLAISCLGLHWT  174 (191)
Q Consensus       152 ~~~l~~~~~~fDlVis~~~l~~~  174 (191)
                      ........++||.|+++.+...+
T Consensus       132 g~~g~~~~apfD~I~v~~a~~~i  154 (209)
T PF01135_consen  132 GSEGWPEEAPFDRIIVTAAVPEI  154 (209)
T ss_dssp             GGGTTGGG-SEEEEEESSBBSS-
T ss_pred             hhhccccCCCcCEEEEeeccchH
Confidence            65433345789999999887644

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.19  E-value=4.7e-11  Score=97.35  Aligned_cols=100  Identities=17%  Similarity=0.191  Sum_probs=70.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCC--------CCceeeEecCCCC------CC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND--------NIETCFVVGDEEF------LP  156 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--------~~~~~~~~~d~~~------l~  156 (191)
                      ++.+|||+|||-|..+..+... ....++|+|+|...+++|+++.......        .-...++.+|.-.      ++
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            6779999999999888888664 4689999999999999999998321111        1245667777442      22


Q ss_pred             CCCCCcceEEeCCcccCc-CC---hHHHHHHHHhccCCC
Q 029554          157 LKESSLDLAISCLGLHWT-ND---LPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~~~-~d---~~~~l~~i~r~Lkpg  191 (191)
                      .....||+|-|.+++||. .+   ...+|.++.+.|+||
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G  179 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG  179 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence            233599999999999986 32   335899999999986

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK04457 spermidine synthase; Provisional

Probab=99.19  E-value=2.3e-10  Score=90.74  Aligned_cols=100  Identities=7%  Similarity=-0.070  Sum_probs=76.0

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCCCCCCcceEEeCC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKESSLDLAISCL  169 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~~~~~fDlVis~~  169 (191)
                      .+.+|||||||+|.++..+....|..+++++|+++.+++.|++.+.. .....++.++.+|... +....++||+|++..
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~-~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL-PENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC-CCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            45689999999999999998888888999999999999999987643 1123578899999542 332346899999863


Q ss_pred             cc-cCcC---ChHHHHHHHHhccCCC
Q 029554          170 GL-HWTN---DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l-~~~~---d~~~~l~~i~r~Lkpg  191 (191)
                      .- ...+   ....+++++.++|+||
T Consensus       145 ~~~~~~~~~l~t~efl~~~~~~L~pg  170 (262)
T PRK04457        145 FDGEGIIDALCTQPFFDDCRNALSSD  170 (262)
T ss_pred             CCCCCCccccCcHHHHHHHHHhcCCC
Confidence            11 1111   2368999999999996

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.18  E-value=2.5e-10  Score=96.47  Aligned_cols=102  Identities=11%  Similarity=-0.028  Sum_probs=75.2

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC--CCCCcceEE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL--KESSLDLAI  166 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~--~~~~fDlVi  166 (191)
                      ..++.+|||+|||+|..+..++...+..+++++|+++.+++.++++....+- ...+.+..+|....+.  ++++||.|+
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~-~~~v~~~~~d~~~~~~~~~~~~fD~Vl  314 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL-TIKAETKDGDGRGPSQWAENEQFDRIL  314 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeccccccccccccccccCEEE
Confidence            4577899999999999999998765557999999999999999998875221 1233445566554433  457899999


Q ss_pred             eC------CcccCcCC----------------hHHHHHHHHhccCCC
Q 029554          167 SC------LGLHWTND----------------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~------~~l~~~~d----------------~~~~l~~i~r~Lkpg  191 (191)
                      +.      .++++.++                ...++.++.++||||
T Consensus       315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg  361 (426)
T TIGR00563       315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG  361 (426)
T ss_pred             EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            53      23554444                356899999999997

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.17  E-value=3.8e-10  Score=95.42  Aligned_cols=100  Identities=11%  Similarity=0.115  Sum_probs=75.7

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceEE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLAI  166 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlVi  166 (191)
                      ..++.+|||+|||+|..+..++...+..+|+++|+|+.+++.++++....   ...+.++++|...++  +++++||.|+
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~---g~~~~~~~~D~~~~~~~~~~~~fD~Vl  318 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL---GLKATVIVGDARDPAQWWDGQPFDRIL  318 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc---CCCeEEEEcCcccchhhcccCCCCEEE
Confidence            45778999999999999999988765579999999999999999988652   223678888987653  3457899999


Q ss_pred             eCCc------c------cCcCC----------hHHHHHHHHhccCCC
Q 029554          167 SCLG------L------HWTND----------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~------l------~~~~d----------~~~~l~~i~r~Lkpg  191 (191)
                      ++.-      +      .|...          ...++.++.++||||
T Consensus       319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpG  365 (427)
T PRK10901        319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPG  365 (427)
T ss_pred             ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            5431      1      12211          236789999999997

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.16  E-value=1.1e-10  Score=93.20  Aligned_cols=88  Identities=16%  Similarity=0.183  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~  153 (191)
                      ...+...+++.+.  ..++.+|||+|||+|.++..+++.+  .+|+++|+++.|++.++++..     ..++.++++|+.
T Consensus        27 ~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~-----~~~v~~i~~D~~   97 (272)
T PRK00274         27 DENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA-----EDNLTIIEGDAL   97 (272)
T ss_pred             CHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc-----cCceEEEEChhh
Confidence            3345566666554  3467799999999999999999987  599999999999999987652     146899999988


Q ss_pred             CCCCCCCCcceEEeCCc
Q 029554          154 FLPLKESSLDLAISCLG  170 (191)
Q Consensus       154 ~l~~~~~~fDlVis~~~  170 (191)
                      .+++++-.+|.||+|.-
T Consensus        98 ~~~~~~~~~~~vv~NlP  114 (272)
T PRK00274         98 KVDLSELQPLKVVANLP  114 (272)
T ss_pred             cCCHHHcCcceEEEeCC
Confidence            88765322588998854

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.15  E-value=3.9e-10  Score=85.11  Aligned_cols=89  Identities=19%  Similarity=0.147  Sum_probs=65.2

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--------CCCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LKES  160 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--------~~~~  160 (191)
                      .++.+|||+|||+|.++..+.... +..+++++|+|+.+      ..       .++.+++.|+...+        ++++
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~-------~~i~~~~~d~~~~~~~~~l~~~~~~~   97 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI-------ENVDFIRGDFTDEEVLNKIRERVGDD   97 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC-------CCceEEEeeCCChhHHHHHHHHhCCC
Confidence            467899999999999999887765 34689999999865      11       12667777866532        3566


Q ss_pred             CcceEEeCCccc----CcC-------ChHHHHHHHHhccCCC
Q 029554          161 SLDLAISCLGLH----WTN-------DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       161 ~fDlVis~~~l~----~~~-------d~~~~l~~i~r~Lkpg  191 (191)
                      +||+|+++.+.+    |..       +...++.++.++|+||
T Consensus        98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg  139 (188)
T TIGR00438        98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK  139 (188)
T ss_pred             CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC
Confidence            899999976432    211       1367899999999986

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.15  E-value=4.5e-10  Score=95.15  Aligned_cols=101  Identities=14%  Similarity=0.010  Sum_probs=78.4

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----CCCCCcc
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKESSLD  163 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----~~~~~fD  163 (191)
                      ..++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++...  ....++.+++.|...++    +..++||
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r--~g~~~v~~~~~D~~~~~~~~~~~~~~fD  327 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR--LGLKSIKILAADSRNLLELKPQWRGYFD  327 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH--cCCCeEEEEeCChhhcccccccccccCC
Confidence            4567899999999999999887753 346899999999999999998865  23346888999987664    3457899


Q ss_pred             eEEeC------CcccCcCC----------------hHHHHHHHHhccCCC
Q 029554          164 LAISC------LGLHWTND----------------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       164 lVis~------~~l~~~~d----------------~~~~l~~i~r~Lkpg  191 (191)
                      .|++.      .++++.+|                ...++.++.++||||
T Consensus       328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg  377 (434)
T PRK14901        328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG  377 (434)
T ss_pred             EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99973      24444433                356799999999996

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.15  E-value=3.4e-10  Score=89.62  Aligned_cols=90  Identities=17%  Similarity=0.197  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~  153 (191)
                      ...+.+.+++.+.  ..++.+|||+|||+|.++..+.+.+  .+++++|+++.|++.++++...    ..++.++++|+.
T Consensus        14 d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~----~~~v~ii~~D~~   85 (258)
T PRK14896         14 DDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA----AGNVEIIEGDAL   85 (258)
T ss_pred             CHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc----CCCEEEEEeccc
Confidence            3445666666554  3467899999999999999999886  7899999999999999887632    346899999998


Q ss_pred             CCCCCCCCcceEEeCCcccC
Q 029554          154 FLPLKESSLDLAISCLGLHW  173 (191)
Q Consensus       154 ~l~~~~~~fDlVis~~~l~~  173 (191)
                      .++++  .||.|++|.-.+.
T Consensus        86 ~~~~~--~~d~Vv~NlPy~i  103 (258)
T PRK14896         86 KVDLP--EFNKVVSNLPYQI  103 (258)
T ss_pred             cCCch--hceEEEEcCCccc
Confidence            87765  4899999977553

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.14  E-value=1.8e-10  Score=91.70  Aligned_cols=102  Identities=20%  Similarity=0.225  Sum_probs=79.5

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC----CceeeEecCCC------CCCCC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN----IETCFVVGDEE------FLPLK  158 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~----~~~~~~~~d~~------~l~~~  158 (191)
                      ..+...++++|||-|..+..+...+ +.+++|+||++..+++|+++.....+..    -.+.|+.+|..      .++++
T Consensus       115 ~~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~  193 (389)
T KOG1975|consen  115 TKRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK  193 (389)
T ss_pred             hccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence            3467789999999999988887654 6899999999999999999886422222    24677888743      24556


Q ss_pred             CCCcceEEeCCcccCc----CChHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWT----NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~----~d~~~~l~~i~r~Lkpg  191 (191)
                      +.+||+|-|.+++||.    .....+|.++.+.|+||
T Consensus       194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpG  230 (389)
T KOG1975|consen  194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPG  230 (389)
T ss_pred             CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCC
Confidence            6669999999999985    23456899999999997

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.13  E-value=3.3e-10  Score=90.91  Aligned_cols=101  Identities=19%  Similarity=0.153  Sum_probs=67.4

Q ss_pred             HHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCC
Q 029554           82 LDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESS  161 (191)
Q Consensus        82 ~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~  161 (191)
                      +..+.....++.+|||+|||+|.++...++.| ..+|+++|+++..++.++++...  |.... .+........  ..++
T Consensus       152 l~~l~~~~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~--N~~~~-~~~v~~~~~~--~~~~  225 (295)
T PF06325_consen  152 LELLEKYVKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAEL--NGVED-RIEVSLSEDL--VEGK  225 (295)
T ss_dssp             HHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHH--TT-TT-CEEESCTSCT--CCS-
T ss_pred             HHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHH--cCCCe-eEEEEEeccc--cccc
Confidence            33333334577899999999999999888876 46899999999999999998875  33222 2222222222  3488


Q ss_pred             cceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          162 LDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       162 fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ||+|++|-...   -+...+..+.++|+||
T Consensus       226 ~dlvvANI~~~---vL~~l~~~~~~~l~~~  252 (295)
T PF06325_consen  226 FDLVVANILAD---VLLELAPDIASLLKPG  252 (295)
T ss_dssp             EEEEEEES-HH---HHHHHHHHCHHHEEEE
T ss_pred             CCEEEECCCHH---HHHHHHHHHHHhhCCC
Confidence            99999986544   2345666677777764

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.12  E-value=2.9e-10  Score=87.15  Aligned_cols=98  Identities=19%  Similarity=0.124  Sum_probs=77.9

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCC--ceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC----CCCCCCCCcce
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGI--EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE----FLPLKESSLDL  164 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~----~l~~~~~~fDl  164 (191)
                      +..+|||+|||.|.....+.+..+.  -.++++|.|+..++..+++...   ...++...+.|+.    .-+.+.+++|+
T Consensus        71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~---~e~~~~afv~Dlt~~~~~~~~~~~svD~  147 (264)
T KOG2361|consen   71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY---DESRVEAFVWDLTSPSLKEPPEEGSVDI  147 (264)
T ss_pred             ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc---chhhhcccceeccchhccCCCCcCccce
Confidence            3347999999999999988877655  7899999999999999876543   3345555566644    23567899999


Q ss_pred             EEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          165 AISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       165 Vis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      |++.++|.-+.  ....++.++.++||||
T Consensus       148 it~IFvLSAi~pek~~~a~~nl~~llKPG  176 (264)
T KOG2361|consen  148 ITLIFVLSAIHPEKMQSVIKNLRTLLKPG  176 (264)
T ss_pred             EEEEEEEeccChHHHHHHHHHHHHHhCCC
Confidence            99999988763  4678999999999997

>TIGR00417 speE spermidine synthase

Probab=99.10  E-value=9.7e-10  Score=87.57  Aligned_cols=101  Identities=19%  Similarity=0.144  Sum_probs=74.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC--CCCceeeEecCCC-CCCCCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN--DNIETCFVVGDEE-FLPLKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~~~~d~~-~l~~~~~~fDlVis  167 (191)
                      .+.+||++|||+|..+..+.+..+..+++++|+++.+++.+++.+..+..  ...++.++..|.. .+...+++||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            34599999999999998887776568999999999999999987654211  1245677777743 22223478999999


Q ss_pred             CCcccCcC--C--hHHHHHHHHhccCCC
Q 029554          168 CLGLHWTN--D--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~--d--~~~~l~~i~r~Lkpg  191 (191)
                      ........  +  ...+++.+.++|+||
T Consensus       152 D~~~~~~~~~~l~~~ef~~~~~~~L~pg  179 (270)
T TIGR00417       152 DSTDPVGPAETLFTKEFYELLKKALNED  179 (270)
T ss_pred             eCCCCCCcccchhHHHHHHHHHHHhCCC
Confidence            76533322  2  357889999999986

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.07  E-value=8.3e-10  Score=89.84  Aligned_cols=74  Identities=12%  Similarity=0.030  Sum_probs=61.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC-CCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-KESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~fDlVis~  168 (191)
                      ++.+|||+|||+|.++..++..+  .+|+|+|+|+.+++.++++...  +...++.++++|+..+.. ..++||+|+++
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~--~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAE--LGLTNVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHH--cCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            45789999999999999999876  8999999999999999988765  333568999999875432 23579999987

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=1.2e-09  Score=87.40  Aligned_cols=70  Identities=29%  Similarity=0.308  Sum_probs=57.5

Q ss_pred             eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC-CCCCCCCCCCcceEEeC
Q 029554           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD-EEFLPLKESSLDLAISC  168 (191)
Q Consensus        94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d-~~~l~~~~~~fDlVis~  168 (191)
                      +|||+|||+|.++..++..++..+|+++|+|+..++.|++++..  +...++.++.+| ++.++   ++||+||||
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~--~~l~~~~~~~~dlf~~~~---~~fDlIVsN  183 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER--NGLVRVLVVQSDLFEPLR---GKFDLIVSN  183 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH--cCCccEEEEeeecccccC---CceeEEEeC
Confidence            79999999999999999999888999999999999999998875  222455666665 23332   489999998

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.07  E-value=3.1e-09  Score=83.80  Aligned_cols=73  Identities=16%  Similarity=0.034  Sum_probs=57.5

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCC-CCCCcceEEeCC
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPL-KESSLDLAISCL  169 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~-~~~~fDlVis~~  169 (191)
                      ..+|||+|||+|.++..++...+..+++++|+|+.+++.++++...  +.   ..++++|+.. ++- ..++||+|++|-
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~--~~---~~~~~~D~~~~l~~~~~~~fDlVv~NP  161 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD--AG---GTVHEGDLYDALPTALRGRVDILAANA  161 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--cC---CEEEEeechhhcchhcCCCEeEEEECC
Confidence            3489999999999999998776667999999999999999988754  22   4678888653 321 135799999984

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.07  E-value=1.3e-09  Score=93.96  Aligned_cols=76  Identities=16%  Similarity=0.100  Sum_probs=60.2

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      ..+|||+|||+|.++..++...+..+++++|+|+.+++.++++.... +...++.++.+|+.. +++.++||+|+||-
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~-~l~~~v~~~~~D~~~-~~~~~~fDlIvsNP  214 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY-EVTDRIQIIHSNWFE-NIEKQKFDFIVSNP  214 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc-CCccceeeeecchhh-hCcCCCccEEEECC
Confidence            45899999999999999887777789999999999999999887541 223468888888543 12356899999963

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.07  E-value=9.9e-10  Score=93.31  Aligned_cols=76  Identities=13%  Similarity=0.062  Sum_probs=62.2

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC----CCCCCCCcceE
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPLKESSLDLA  165 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~----l~~~~~~fDlV  165 (191)
                      .++.+|||+|||+|.++..++..+  .+|+++|+|+.|++.|+++...  +...++.+.++|+..    .++.+++||+|
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~--~~~~~v~~~~~d~~~~l~~~~~~~~~fD~V  371 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARR--NGLDNVTFYHANLEEDFTDQPWALGGFDKV  371 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHH--cCCCceEEEEeChHHhhhhhhhhcCCCCEE
Confidence            456799999999999999999876  7999999999999999988764  334568999999753    23445689999


Q ss_pred             EeCC
Q 029554          166 ISCL  169 (191)
Q Consensus       166 is~~  169 (191)
                      +++-
T Consensus       372 i~dP  375 (443)
T PRK13168        372 LLDP  375 (443)
T ss_pred             EECc
Confidence            9863

>PHA03412 putative methyltransferase; Provisional

Probab=99.05  E-value=2.3e-09  Score=82.90  Aligned_cols=93  Identities=13%  Similarity=0.076  Sum_probs=69.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcC---CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRG---GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis  167 (191)
                      ...+|||+|||+|.++..++...   +..+++++|+++.+++.|++...       ++.+...|+...++ +++||+||+
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------~~~~~~~D~~~~~~-~~~FDlIIs  120 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------EATWINADALTTEF-DTLFDMAIS  120 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------CCEEEEcchhcccc-cCCccEEEE
Confidence            36799999999999999887642   24689999999999999987643       27788899876654 468999999


Q ss_pred             CCcccCc--C---------C-hHHHHHHHHhccCCC
Q 029554          168 CLGLHWT--N---------D-LPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~--~---------d-~~~~l~~i~r~Lkpg  191 (191)
                      |=-..-.  .         + ...++..+.++++||
T Consensus       121 NPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G  156 (241)
T PHA03412        121 NPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQG  156 (241)
T ss_pred             CCCCCCccccccCCcccccHHHHHHHHHHHHHcCCC
Confidence            8432211  1         1 234778888877776

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.05  E-value=8.1e-10  Score=86.00  Aligned_cols=87  Identities=15%  Similarity=-0.008  Sum_probs=72.5

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcc
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGL  171 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l  171 (191)
                      ..++||||+|.|..+..++..+  .+|+++|.|+.|..+.+++.         ..  +.+...+.-.+.+||+|.|.++|
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~kg---------~~--vl~~~~w~~~~~~fDvIscLNvL  161 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKKG---------FT--VLDIDDWQQTDFKFDVISCLNVL  161 (265)
T ss_pred             CCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhCC---------Ce--EEehhhhhccCCceEEEeehhhh
Confidence            4579999999999999999987  89999999999988887643         22  23333343345689999999999


Q ss_pred             cCcCChHHHHHHHHhccCCC
Q 029554          172 HWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       172 ~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ....+|...|++|++.|+|+
T Consensus       162 DRc~~P~~LL~~i~~~l~p~  181 (265)
T PF05219_consen  162 DRCDRPLTLLRDIRRALKPN  181 (265)
T ss_pred             hccCCHHHHHHHHHHHhCCC
Confidence            99999999999999999985

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.04  E-value=1.4e-09  Score=85.89  Aligned_cols=88  Identities=15%  Similarity=0.164  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      ..+...+++.+.  ..++.+|||+|||+|.++..+.+.+  .+|+++|+++.+++.++++..    ...++.++.+|+..
T Consensus        15 ~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~----~~~~v~v~~~D~~~   86 (253)
T TIGR00755        15 ESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLS----LYERLEVIEGDALK   86 (253)
T ss_pred             HHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhC----cCCcEEEEECchhc
Confidence            345556666554  3467799999999999999999988  679999999999999987763    24568899999888


Q ss_pred             CCCCCCCcc---eEEeCCccc
Q 029554          155 LPLKESSLD---LAISCLGLH  172 (191)
Q Consensus       155 l~~~~~~fD---lVis~~~l~  172 (191)
                      ++++  .||   +|++|.-.+
T Consensus        87 ~~~~--~~d~~~~vvsNlPy~  105 (253)
T TIGR00755        87 VDLP--DFPKQLKVVSNLPYN  105 (253)
T ss_pred             CChh--HcCCcceEEEcCChh
Confidence            7764  466   888887655

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.04  E-value=1.3e-09  Score=87.67  Aligned_cols=93  Identities=15%  Similarity=0.166  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      ..+...+++.+.  ..++.+|||||||+|.++..+.+.+  .+|+++|+++.|++.+++++... ....++.++.+|+..
T Consensus        22 ~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~-~~~~~v~ii~~Dal~   96 (294)
T PTZ00338         22 PLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNS-PLASKLEVIEGDALK   96 (294)
T ss_pred             HHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhc-CCCCcEEEEECCHhh
Confidence            345556665554  3467899999999999999998876  78999999999999999887531 124578999999877


Q ss_pred             CCCCCCCcceEEeCCcccCc
Q 029554          155 LPLKESSLDLAISCLGLHWT  174 (191)
Q Consensus       155 l~~~~~~fDlVis~~~l~~~  174 (191)
                      .++  ..||.|++|.-.+..
T Consensus        97 ~~~--~~~d~VvaNlPY~Is  114 (294)
T PTZ00338         97 TEF--PYFDVCVANVPYQIS  114 (294)
T ss_pred             hcc--cccCEEEecCCcccC
Confidence            654  368999998655533

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.04  E-value=2.3e-09  Score=91.10  Aligned_cols=100  Identities=13%  Similarity=0.021  Sum_probs=74.9

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLA  165 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlV  165 (191)
                      ..++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++..  ....++.++++|...++  ++ ++||+|
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~--~g~~~v~~~~~D~~~~~~~~~-~~fD~V  324 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR--LGLTNIETKALDARKVHEKFA-EKFDKI  324 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--cCCCeEEEEeCCcccccchhc-ccCCEE
Confidence            3467799999999999999888753 457999999999999999988865  23345888999977653  33 689999


Q ss_pred             EeCCc------ccCcCC----------------hHHHHHHHHhccCCC
Q 029554          166 ISCLG------LHWTND----------------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       166 is~~~------l~~~~d----------------~~~~l~~i~r~Lkpg  191 (191)
                      +++.-      +.+.++                ...++.++.++||||
T Consensus       325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG  372 (444)
T PRK14902        325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG  372 (444)
T ss_pred             EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            98532      111111                135788899999997

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.03  E-value=1.7e-09  Score=91.42  Aligned_cols=101  Identities=12%  Similarity=0.022  Sum_probs=75.5

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-CCCCCcceEE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKESSLDLAI  166 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-~~~~~fDlVi  166 (191)
                      ..++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++++...  ...++.+.+.|...++ +..++||.|+
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~--g~~~v~~~~~Da~~l~~~~~~~fD~Vl  312 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL--KLSSIEIKIADAERLTEYVQDTFDRIL  312 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc--CCCeEEEEECchhhhhhhhhccCCEEE
Confidence            4577899999999999998887653 3479999999999999999988752  2335788889977665 4457899999


Q ss_pred             eCC---cccCc---CC----------------hHHHHHHHHhccCCC
Q 029554          167 SCL---GLHWT---ND----------------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~---~l~~~---~d----------------~~~~l~~i~r~Lkpg  191 (191)
                      +..   ++..+   ++                ....+.++.++||||
T Consensus       313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG  359 (431)
T PRK14903        313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG  359 (431)
T ss_pred             ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            632   22221   11                245688899999986

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.03  E-value=2.1e-09  Score=84.18  Aligned_cols=89  Identities=21%  Similarity=0.146  Sum_probs=72.5

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ...+|||||+|.|.++..+.+.+|..+++.+|. |..++.+++        ..++.++.+|+. .++|.  +|+|+...+
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f-~~~P~--~D~~~l~~v  167 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFF-DPLPV--ADVYLLRHV  167 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TT-TCCSS--ESEEEEESS
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------ccccccccccHH-hhhcc--ccceeeehh
Confidence            456899999999999999999999999999998 777877766        334999999987 55554  999999999


Q ss_pred             ccCcCCh--HHHHHHHHhccCCC
Q 029554          171 LHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      ||+++|.  ..+|++++++|+||
T Consensus       168 Lh~~~d~~~~~iL~~~~~al~pg  190 (241)
T PF00891_consen  168 LHDWSDEDCVKILRNAAAALKPG  190 (241)
T ss_dssp             GGGS-HHHHHHHHHHHHHHSEEC
T ss_pred             hhhcchHHHHHHHHHHHHHhCCC
Confidence            9988654  46899999999986

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.03  E-value=3.6e-10  Score=85.98  Aligned_cols=97  Identities=18%  Similarity=0.128  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCCccHHHHHH-hhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           91 TFPTALCLGGSLEAVRRLL-RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l-~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      ...+.||.|||-|+.+..+ .+.+  .+|..+|+.+..++.|++....  .......+.+..++.+.++++.||+||+..
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f--~~VDlVEp~~~Fl~~a~~~l~~--~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW  130 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVF--DEVDLVEPVEKFLEQAKEYLGK--DNPRVGEFYCVGLQDFTPEEGKYDLIWIQW  130 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCC--GGCCEEEEEES-GGG----TT-EEEEEEES
T ss_pred             CcceEEecccccchhHHHHHHHhc--CEeEEeccCHHHHHHHHHHhcc--cCCCcceEEecCHhhccCCCCcEeEEEehH
Confidence            3568999999999999866 4555  8999999999999999876642  122346777788887765668999999999


Q ss_pred             cccCcC--ChHHHHHHHHhccCCC
Q 029554          170 GLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      ++.|+.  |+..+|.++...|+|+
T Consensus       131 ~lghLTD~dlv~fL~RCk~~L~~~  154 (218)
T PF05891_consen  131 CLGHLTDEDLVAFLKRCKQALKPN  154 (218)
T ss_dssp             -GGGS-HHHHHHHHHHHHHHEEEE
T ss_pred             hhccCCHHHHHHHHHHHHHhCcCC
Confidence            999996  5678999999999875

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK01581 speE spermidine synthase; Validated

Probab=99.02  E-value=2.6e-09  Score=87.45  Aligned_cols=101  Identities=16%  Similarity=0.110  Sum_probs=74.2

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHh--hhhccC---CCCceeeEecCCCC-CCCCCCCcce
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA--QQDAHN---DNIETCFVVGDEEF-LPLKESSLDL  164 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~--~~~~~~---~~~~~~~~~~d~~~-l~~~~~~fDl  164 (191)
                      .+.+||++|||+|..+..+.+..+..+++++|+++.+++.|++.  +..+..   ...++.++.+|... ++...+.||+
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV  229 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV  229 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence            45699999999999988888766678999999999999999862  111111   24578889998553 4444578999


Q ss_pred             EEeCCcccC---cCC--hHHHHHHHHhccCCC
Q 029554          165 AISCLGLHW---TND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       165 Vis~~~l~~---~~d--~~~~l~~i~r~Lkpg  191 (191)
                      |++...-..   ...  -..+++.+.+.|+||
T Consensus       230 IIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg  261 (374)
T PRK01581        230 IIIDFPDPATELLSTLYTSELFARIATFLTED  261 (374)
T ss_pred             EEEcCCCccccchhhhhHHHHHHHHHHhcCCC
Confidence            999853111   111  146889999999997

>PLN02366 spermidine synthase

Probab=99.01  E-value=6.6e-09  Score=84.07  Aligned_cols=101  Identities=18%  Similarity=0.128  Sum_probs=76.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc--CCCCceeeEecCCCC-CC-CCCCCcceEE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEEF-LP-LKESSLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~d~~~-l~-~~~~~fDlVi  166 (191)
                      .+.+||+||||.|.....+.+..+..+++++|+++.+++.+++.+....  ....++.++.+|... +. .+++.||+|+
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi  170 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII  170 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence            4678999999999999999877556899999999999999999875421  124578999999532 22 2356899999


Q ss_pred             eCCcccCcCC----hHHHHHHHHhccCCC
Q 029554          167 SCLGLHWTND----LPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~~~d----~~~~l~~i~r~Lkpg  191 (191)
                      +...-.+.+.    -..+++.+.++|+||
T Consensus       171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pg  199 (308)
T PLN02366        171 VDSSDPVGPAQELFEKPFFESVARALRPG  199 (308)
T ss_pred             EcCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence            9765443321    246899999999996

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.00  E-value=2.7e-09  Score=90.70  Aligned_cols=100  Identities=13%  Similarity=0.055  Sum_probs=74.4

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEe
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAIS  167 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis  167 (191)
                      ..++.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.+++++...  ...++.++++|...++ ++++||.|++
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g~~~v~~~~~Da~~~~-~~~~fD~Vl~  324 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL--GITIIETIEGDARSFS-PEEQPDAILL  324 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh--CCCeEEEEeCcccccc-cCCCCCEEEE
Confidence            3467899999999999988877643 2368999999999999999988652  3346888999987765 4578999996


Q ss_pred             C----C--ccc------CcCC----------hHHHHHHHHhccCCC
Q 029554          168 C----L--GLH------WTND----------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~----~--~l~------~~~d----------~~~~l~~i~r~Lkpg  191 (191)
                      .    .  .+.      |..+          ...++.++.++||||
T Consensus       325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg  370 (445)
T PRK14904        325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG  370 (445)
T ss_pred             cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            2    1  111      1111          235799999999997

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.00  E-value=5.5e-09  Score=81.56  Aligned_cols=107  Identities=10%  Similarity=-0.043  Sum_probs=78.2

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-C-
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-P-  156 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~-  156 (191)
                      +++..+.. .....+|||+|||+|+.+..++... +..+++++|+++.+++.|++.+... +...++.++.+|.... + 
T Consensus        58 ~~L~~l~~-~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~-gl~~~i~~~~gda~~~L~~  135 (234)
T PLN02781         58 LFLSMLVK-IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA-GVDHKINFIQSDALSALDQ  135 (234)
T ss_pred             HHHHHHHH-HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHH
Confidence            34444443 3356789999999999888887643 3579999999999999999988752 2235688999986542 2 


Q ss_pred             ----CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          157 ----LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ----~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                          .+.++||+|+....-   +.....+.++.++|+||
T Consensus       136 l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~G  171 (234)
T PLN02781        136 LLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVG  171 (234)
T ss_pred             HHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCC
Confidence                124689999986431   24457788889999987

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.00  E-value=2.4e-09  Score=85.00  Aligned_cols=101  Identities=7%  Similarity=-0.075  Sum_probs=75.0

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEe
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAIS  167 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis  167 (191)
                      ..++.+|||+|||+|..+..++... +...|+++|+++.+++.+++++..  ....++.+...|...++...+.||.|++
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~--~g~~~v~~~~~D~~~~~~~~~~fD~Vl~  146 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR--CGVLNVAVTNFDGRVFGAAVPKFDAILL  146 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH--cCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence            4577899999999999999887653 235899999999999999998875  2334678888887766544567999996


Q ss_pred             CC------cccCcCC----------------hHHHHHHHHhccCCC
Q 029554          168 CL------GLHWTND----------------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~------~l~~~~d----------------~~~~l~~i~r~Lkpg  191 (191)
                      ..      ++..-++                ...+|.++.++||||
T Consensus       147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg  192 (264)
T TIGR00446       147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG  192 (264)
T ss_pred             cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            32      1211111                234888888999986

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.99  E-value=1.3e-09  Score=82.83  Aligned_cols=98  Identities=16%  Similarity=0.135  Sum_probs=75.9

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC--CCCCCcceEEeC
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP--LKESSLDLAISC  168 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~--~~~~~fDlVis~  168 (191)
                      ...+||||||.|.++..++...|...++|+|++...+..+.++...  ....++.++++|+.. ++  ++++++|.|+.+
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~--~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~   95 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEK--RGLKNVRFLRGDARELLRRLFPPGSVDRIYIN   95 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH--HTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHh--hcccceEEEEccHHHHHhhcccCCchheEEEe
Confidence            3479999999999999999999999999999999999999888765  356789999999775 32  467899999999


Q ss_pred             CcccCcCC--------hHHHHHHHHhccCCC
Q 029554          169 LGLHWTND--------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d--------~~~~l~~i~r~Lkpg  191 (191)
                      +-=-|...        -..++..+.++|+||
T Consensus        96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~g  126 (195)
T PF02390_consen   96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPG  126 (195)
T ss_dssp             S-----SGGGGGGSTTSHHHHHHHHHHEEEE
T ss_pred             CCCCCcccchhhhhcCCchHHHHHHHHcCCC
Confidence            87666542        347899999999986

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK03612 spermidine synthase; Provisional

Probab=98.99  E-value=1.8e-09  Score=93.40  Aligned_cols=101  Identities=20%  Similarity=0.129  Sum_probs=75.2

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHh--hhhcc---CCCCceeeEecCCCC-CCCCCCCcce
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA--QQDAH---NDNIETCFVVGDEEF-LPLKESSLDL  164 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~--~~~~~---~~~~~~~~~~~d~~~-l~~~~~~fDl  164 (191)
                      .+.+|||+|||+|..+..+.+..+..+++++|+++++++.+++.  +....   -..++++++.+|... +...+++||+
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv  376 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV  376 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence            45789999999999999888764448999999999999999983  32211   123568888898653 3333468999


Q ss_pred             EEeCCcccCcCCh-----HHHHHHHHhccCCC
Q 029554          165 AISCLGLHWTNDL-----PGAMIQVSIFLLPD  191 (191)
Q Consensus       165 Vis~~~l~~~~d~-----~~~l~~i~r~Lkpg  191 (191)
                      |+++..-.+.+..     ..+++.+.++|+||
T Consensus       377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pg  408 (521)
T PRK03612        377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPD  408 (521)
T ss_pred             EEEeCCCCCCcchhccchHHHHHHHHHhcCCC
Confidence            9998655443222     35789999999996

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=6.3e-09  Score=77.28  Aligned_cols=72  Identities=18%  Similarity=0.146  Sum_probs=60.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .+.+|+|+|||||.++....-.+ ...|+++|+++++++.++++..+   ...++.|.+.|+....   +.+|.|+.|=
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~---l~g~v~f~~~dv~~~~---~~~dtvimNP  116 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEE---LLGDVEFVVADVSDFR---GKFDTVIMNP  116 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHh---hCCceEEEEcchhhcC---CccceEEECC
Confidence            56679999999999988776655 47899999999999999998875   5566999999998875   5689999873

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.97  E-value=2.8e-09  Score=82.29  Aligned_cols=101  Identities=17%  Similarity=0.049  Sum_probs=76.5

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh---c-------cCCCCceeeEecCCCCCCCC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD---A-------HNDNIETCFVVGDEEFLPLK  158 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~---~-------~~~~~~~~~~~~d~~~l~~~  158 (191)
                      ..++.+||..|||.|.....|++.|  .+|+|+|+|+..++.+.+....   .       .....++.+.++|+-.++..
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~  112 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE  112 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence            3456699999999999999999988  8999999999999998443211   0       01233578999998776533


Q ss_pred             C-CCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          159 E-SSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~-~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      . ++||+|+=..+++-++  ......+.+.++|+||
T Consensus       113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~  148 (218)
T PF05724_consen  113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG  148 (218)
T ss_dssp             CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE
T ss_pred             hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence            3 5899999988888774  5678899999999985

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.96  E-value=3.4e-09  Score=94.69  Aligned_cols=98  Identities=14%  Similarity=0.006  Sum_probs=73.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC--CceeeEecCCCC-CCCCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEF-LPLKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~--~~~~~~~~d~~~-l~~~~~~fDlVis  167 (191)
                      .+.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.+++++..  +..  .++.++++|+.. +.-..++||+||+
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~--ng~~~~~v~~i~~D~~~~l~~~~~~fDlIil  614 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFAL--NGLSGRQHRLIQADCLAWLKEAREQFDLIFI  614 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHH--hCCCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence            46789999999999999998864 35799999999999999998865  222  468999999643 2211468999999


Q ss_pred             CCc-----------ccCcCChHHHHHHHHhccCCC
Q 029554          168 CLG-----------LHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~-----------l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +--           .....+....+..+.++|+||
T Consensus       615 DPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~g  649 (702)
T PRK11783        615 DPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPG  649 (702)
T ss_pred             CCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCC
Confidence            621           111234566788888899986

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.94  E-value=9.4e-09  Score=76.65  Aligned_cols=102  Identities=15%  Similarity=-0.002  Sum_probs=66.7

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc-CCCCceeeEecCCCC-C---CCCCCCcc
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH-NDNIETCFVVGDEEF-L---PLKESSLD  163 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-~~~~~~~~~~~d~~~-l---~~~~~~fD  163 (191)
                      ...+.+|||||||+|..+..++...+..+|+.+|.++ .++.++.+..... ....++.+...|-.. .   .....+||
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence            3467799999999999999888874568999999999 8888888776511 023456667666432 1   12346899


Q ss_pred             eEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          164 LAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       164 lVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +|+.+-+++.......++.-+.++|+|+
T Consensus       122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~  149 (173)
T PF10294_consen  122 VILASDVLYDEELFEPLVRTLKRLLKPN  149 (173)
T ss_dssp             EEEEES--S-GGGHHHHHHHHHHHBTT-
T ss_pred             EEEEecccchHHHHHHHHHHHHHHhCCC
Confidence            9999999998878888899999998874

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.92  E-value=5.1e-09  Score=81.06  Aligned_cols=96  Identities=13%  Similarity=0.146  Sum_probs=81.8

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCC-ceeeEecCCCCC---CCCCCCcceEEeC
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFL---PLKESSLDLAISC  168 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-~~~~~~~d~~~l---~~~~~~fDlVis~  168 (191)
                      ..+||||||.|.++..+++..|...++|+|+....+..|.+++.+   ... ++.+++.|+..+   -+++++.|-|..+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~---~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~  126 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKE---LGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN  126 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHH---cCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE
Confidence            579999999999999999999999999999999999999888875   444 899999996632   2456699999999


Q ss_pred             CcccCcCC--------hHHHHHHHHhccCCC
Q 029554          169 LGLHWTND--------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d--------~~~~l~~i~r~Lkpg  191 (191)
                      +.=-|...        .+.+++.+.++|+||
T Consensus       127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~g  157 (227)
T COG0220         127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPG  157 (227)
T ss_pred             CCCCCCCccccccccCCHHHHHHHHHHccCC
Confidence            98887643        347899999999997

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.91  E-value=1e-08  Score=79.99  Aligned_cols=89  Identities=17%  Similarity=0.161  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l  155 (191)
                      .+.+.+++..+  .+++..|||+|.|||.++..|.+.+  +.|+++|+++.|++...++... .....+.+++.+|+...
T Consensus        45 ~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~g-tp~~~kLqV~~gD~lK~  119 (315)
T KOG0820|consen   45 LVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQG-TPKSGKLQVLHGDFLKT  119 (315)
T ss_pred             HHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcC-CCccceeeEEecccccC
Confidence            45666666655  5688999999999999999999988  9999999999999999998854 22346789999998876


Q ss_pred             CCCCCCcceEEeCCcc
Q 029554          156 PLKESSLDLAISCLGL  171 (191)
Q Consensus       156 ~~~~~~fDlVis~~~l  171 (191)
                      ++|  .||.||+|.-.
T Consensus       120 d~P--~fd~cVsNlPy  133 (315)
T KOG0820|consen  120 DLP--RFDGCVSNLPY  133 (315)
T ss_pred             CCc--ccceeeccCCc
Confidence            544  59999997543

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.90  E-value=1.9e-08  Score=76.88  Aligned_cols=135  Identities=13%  Similarity=0.061  Sum_probs=87.7

Q ss_pred             CHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHH
Q 029554           52 DRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKL  130 (191)
Q Consensus        52 d~~~~~~~~~~~a~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~  130 (191)
                      +.........++..........-.....+++..+.. .....+||||||++|+.+..++...| ..+|+.+|+++...+.
T Consensus         7 ~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~   85 (205)
T PF01596_consen    7 EPELLKELREFTRENQGLPQMSISPETGQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEI   85 (205)
T ss_dssp             STHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHH
T ss_pred             CCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHH
Confidence            444455555555543322222222223345555554 33567899999999999999997654 5799999999999999


Q ss_pred             HHHhhhhccCCCCceeeEecCCCC-CC-----CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          131 CKDAQQDAHNDNIETCFVVGDEEF-LP-----LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       131 a~~~~~~~~~~~~~~~~~~~d~~~-l~-----~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |++.+... +...+++++.+|... ++     -+.++||+|+.-..=   .+....+..+.++|+||
T Consensus        86 A~~~~~~a-g~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~g  148 (205)
T PF01596_consen   86 ARENFRKA-GLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPG  148 (205)
T ss_dssp             HHHHHHHT-TGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEE
T ss_pred             HHHHHHhc-CCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCC
Confidence            99887651 234579999998542 22     124689999976532   24566777777888775

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.88  E-value=1.4e-08  Score=77.34  Aligned_cols=77  Identities=6%  Similarity=-0.133  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCCCCCCcceEEeCC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKESSLDLAISCL  169 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~~~~~fDlVis~~  169 (191)
                      .+.+|||+|||+|.++..+..++ ..+|+++|.++..++.+++++..  ....++.++++|+.. ++...++||+|+++=
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~--~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DP  129 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLAT--LKAGNARVVNTNALSFLAQPGTPHNVVFVDP  129 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHH--hCCCcEEEEEchHHHHHhhcCCCceEEEECC
Confidence            45789999999999998644444 37999999999999999988765  223468889898653 332345799999975


Q ss_pred             c
Q 029554          170 G  170 (191)
Q Consensus       170 ~  170 (191)
                      -
T Consensus       130 P  130 (199)
T PRK10909        130 P  130 (199)
T ss_pred             C
Confidence            5

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=3.7e-08  Score=76.45  Aligned_cols=103  Identities=17%  Similarity=0.086  Sum_probs=83.6

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhh-cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK  158 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~-~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~  158 (191)
                      .++.++.  ..++.+|||.|.|+|.++..|+. .++..+|+.+|+-++..+.|+++++.+ .....+.+..+|+...-++
T Consensus        85 ~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~-~l~d~v~~~~~Dv~~~~~~  161 (256)
T COG2519          85 YIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF-GLGDRVTLKLGDVREGIDE  161 (256)
T ss_pred             HHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-ccccceEEEeccccccccc
Confidence            3444444  56899999999999999999985 567789999999999999999999763 2233488888997766555


Q ss_pred             CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      + .||.|+.-     ++||..++..+.++|+||
T Consensus       162 ~-~vDav~LD-----mp~PW~~le~~~~~Lkpg  188 (256)
T COG2519         162 E-DVDAVFLD-----LPDPWNVLEHVSDALKPG  188 (256)
T ss_pred             c-ccCEEEEc-----CCChHHHHHHHHHHhCCC
Confidence            4 89999854     669999999999999997

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.85  E-value=7.7e-09  Score=80.20  Aligned_cols=90  Identities=19%  Similarity=0.299  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~  157 (191)
                      .+.+++.+.. ......|-|+|||.+.++.   ...  ..|+.+|+-+                 .+-+++..|+..+|+
T Consensus       168 ld~ii~~ik~-r~~~~vIaD~GCGEakiA~---~~~--~kV~SfDL~a-----------------~~~~V~~cDm~~vPl  224 (325)
T KOG3045|consen  168 LDVIIRKIKR-RPKNIVIADFGCGEAKIAS---SER--HKVHSFDLVA-----------------VNERVIACDMRNVPL  224 (325)
T ss_pred             HHHHHHHHHh-CcCceEEEecccchhhhhh---ccc--cceeeeeeec-----------------CCCceeeccccCCcC
Confidence            3455555553 2234579999999998876   222  5788888632                 225678899999999


Q ss_pred             CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          158 KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++++.|++|.+++|.-. |+..++.++.|+|+||
T Consensus       225 ~d~svDvaV~CLSLMgt-n~~df~kEa~RiLk~g  257 (325)
T KOG3045|consen  225 EDESVDVAVFCLSLMGT-NLADFIKEANRILKPG  257 (325)
T ss_pred             ccCcccEEEeeHhhhcc-cHHHHHHHHHHHhccC
Confidence            99999999999888744 8999999999999996

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.85  E-value=1.4e-08  Score=84.87  Aligned_cols=98  Identities=14%  Similarity=0.040  Sum_probs=69.0

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC--CceeeEecCCCCC-C---CCCCCcce
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFL-P---LKESSLDL  164 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~--~~~~~~~~d~~~l-~---~~~~~fDl  164 (191)
                      .+.+|||+|||+|.++...+..+ ..+|+++|+|+.+++.+++++..  +..  .++.++++|+... .   ...++||+
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~--Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl  296 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVEL--NKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHH--cCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence            46789999999999987655433 46999999999999999998865  332  3688999996542 1   13468999


Q ss_pred             EEeCCcccC---------cCChHHHHHHHHhccCCC
Q 029554          165 AISCLGLHW---------TNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       165 Vis~~~l~~---------~~d~~~~l~~i~r~Lkpg  191 (191)
                      |+++-----         ..+....+....++|+||
T Consensus       297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~g  332 (396)
T PRK15128        297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPG  332 (396)
T ss_pred             EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            998732100         012334445667788875

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.84  E-value=1.9e-08  Score=85.24  Aligned_cols=75  Identities=9%  Similarity=0.059  Sum_probs=61.1

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC----CCCCCCcceE
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL----PLKESSLDLA  165 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l----~~~~~~fDlV  165 (191)
                      .++.+|||+|||+|.++..+++..  .+|+++|+++.+++.+++++..  +...++.++.+|++..    ++.+++||+|
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~--~~~~nv~~~~~d~~~~l~~~~~~~~~~D~v  366 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAEL--NGIANVEFLAGTLETVLPKQPWAGQIPDVL  366 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHH--hCCCceEEEeCCHHHHHHHHHhcCCCCCEE
Confidence            355789999999999999999876  7899999999999999998765  3445789999997542    2334679999


Q ss_pred             EeC
Q 029554          166 ISC  168 (191)
Q Consensus       166 is~  168 (191)
                      +.+
T Consensus       367 i~d  369 (431)
T TIGR00479       367 LLD  369 (431)
T ss_pred             EEC
Confidence            975

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK04148 hypothetical protein; Provisional

Probab=98.83  E-value=7.7e-08  Score=68.26  Aligned_cols=96  Identities=19%  Similarity=0.149  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccH-HHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEA-VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~-~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l  155 (191)
                      +++.+.+.+.  .....+|||||||.|. .+..|.+.+  .+|+++|+++..++.+++..         +.++..|+-.-
T Consensus         4 i~~~l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~~---------~~~v~dDlf~p   70 (134)
T PRK04148          4 IAEFIAENYE--KGKNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKLG---------LNAFVDDLFNP   70 (134)
T ss_pred             HHHHHHHhcc--cccCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhC---------CeEEECcCCCC
Confidence            3444444444  2245789999999996 888888877  89999999999988886653         67788886543


Q ss_pred             CCC-CCCcceEEeCCcccCcCChHHHHHHHHhcc
Q 029554          156 PLK-ESSLDLAISCLGLHWTNDLPGAMIQVSIFL  188 (191)
Q Consensus       156 ~~~-~~~fDlVis~~~l~~~~d~~~~l~~i~r~L  188 (191)
                      ++. -+.+|+|.+..   -..+++..+.++++.+
T Consensus        71 ~~~~y~~a~liysir---pp~el~~~~~~la~~~  101 (134)
T PRK04148         71 NLEIYKNAKLIYSIR---PPRDLQPFILELAKKI  101 (134)
T ss_pred             CHHHHhcCCEEEEeC---CCHHHHHHHHHHHHHc
Confidence            322 25689998743   3446666666666544

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.83  E-value=1.5e-08  Score=76.55  Aligned_cols=91  Identities=20%  Similarity=0.294  Sum_probs=57.2

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK  158 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~  158 (191)
                      +.+++.+.. ......|-|+|||.+.++..+...   ..|...|.-..                 +-.+...|+..+|++
T Consensus        61 d~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~~---~~V~SfDLva~-----------------n~~Vtacdia~vPL~  119 (219)
T PF05148_consen   61 DVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPNK---HKVHSFDLVAP-----------------NPRVTACDIANVPLE  119 (219)
T ss_dssp             HHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S------EEEEESS-S-----------------STTEEES-TTS-S--
T ss_pred             HHHHHHHHh-cCCCEEEEECCCchHHHHHhcccC---ceEEEeeccCC-----------------CCCEEEecCccCcCC
Confidence            445555553 223468999999999999877542   47999997431                 135678999999999


Q ss_pred             CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++++|++|.+++|.-. |...++.|..|+||||
T Consensus       120 ~~svDv~VfcLSLMGT-n~~~fi~EA~RvLK~~  151 (219)
T PF05148_consen  120 DESVDVAVFCLSLMGT-NWPDFIREANRVLKPG  151 (219)
T ss_dssp             TT-EEEEEEES---SS--HHHHHHHHHHHEEEE
T ss_pred             CCceeEEEEEhhhhCC-CcHHHHHHHHheeccC
Confidence            9999999999998866 8999999999999985

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.82  E-value=4.3e-08  Score=75.26  Aligned_cols=107  Identities=17%  Similarity=0.175  Sum_probs=79.6

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEe-cCCC-CCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVV-GDEE-FLP  156 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~d~~-~l~  156 (191)
                      .++..+.. .....+|||+|.+.|+.+.+++...| ..+++.+|.++++.+.|++.+.+. ....++..+. +|.. .+.
T Consensus        49 ~~L~~L~~-~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a-g~~~~i~~~~~gdal~~l~  126 (219)
T COG4122          49 ALLRLLAR-LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA-GVDDRIELLLGGDALDVLS  126 (219)
T ss_pred             HHHHHHHH-hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc-CCcceEEEEecCcHHHHHH
Confidence            34444443 33677999999999999999988776 679999999999999999998762 2233466776 4633 333


Q ss_pred             -CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          157 -LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 -~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                       ...++||+|+.-..   =.+.+.++..+.++|+||
T Consensus       127 ~~~~~~fDliFIDad---K~~yp~~le~~~~lLr~G  159 (219)
T COG4122         127 RLLDGSFDLVFIDAD---KADYPEYLERALPLLRPG  159 (219)
T ss_pred             hccCCCccEEEEeCC---hhhCHHHHHHHHHHhCCC
Confidence             45689999996433   235678899999999987

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.81  E-value=2.9e-08  Score=82.58  Aligned_cols=74  Identities=11%  Similarity=0.031  Sum_probs=59.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-CCCCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-PLKESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~~~~~~fDlVis~  168 (191)
                      ++.+|||++||+|.++..++..+  .+|+++|+++.+++.++++...  +...++.+..+|++.. +...++||+|+.+
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~--~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D  307 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQM--LGLDNLSFAALDSAKFATAQMSAPELVLVN  307 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHH--cCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence            45789999999999999998766  7999999999999999988765  3334789999997643 2122469999986

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=2.8e-08  Score=70.77  Aligned_cols=100  Identities=12%  Similarity=0.041  Sum_probs=71.4

Q ss_pred             hcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCce
Q 029554           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET  145 (191)
Q Consensus        66 ~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~  145 (191)
                      +|.....+...+..-+-....+  ..+..++|+|||.|.+.....- .....|+|+|+.++.++.+.++..+   ...++
T Consensus        25 QY~T~p~iAasM~~~Ih~Tygd--iEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeE---fEvqi   98 (185)
T KOG3420|consen   25 QYPTRPHIAASMLYTIHNTYGD--IEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEE---FEVQI   98 (185)
T ss_pred             hCCCcHHHHHHHHHHHHhhhcc--ccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHH---hhhhh
Confidence            3444433333333333333332  3677899999999999854443 3357899999999999999888765   44557


Q ss_pred             eeEecCCCCCCCCCCCcceEEeCCcc
Q 029554          146 CFVVGDEEFLPLKESSLDLAISCLGL  171 (191)
Q Consensus       146 ~~~~~d~~~l~~~~~~fDlVis~~~l  171 (191)
                      .+.+.|...+.+..+.||.++.|--+
T Consensus        99 dlLqcdildle~~~g~fDtaviNppF  124 (185)
T KOG3420|consen   99 DLLQCDILDLELKGGIFDTAVINPPF  124 (185)
T ss_pred             heeeeeccchhccCCeEeeEEecCCC
Confidence            88999988888788999999988544

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.78  E-value=3.2e-08  Score=80.34  Aligned_cols=82  Identities=12%  Similarity=0.034  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEe-cCCCC----CCCCCCCcceE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVV-GDEEF----LPLKESSLDLA  165 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~d~~~----l~~~~~~fDlV  165 (191)
                      ...+|||||||+|.+...+..+.+..+++++|+++.+++.|++.+....+...++.+.. .+...    +..+++.||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            45689999999998888887765668999999999999999998876111233555543 23222    11245789999


Q ss_pred             EeCCccc
Q 029554          166 ISCLGLH  172 (191)
Q Consensus       166 is~~~l~  172 (191)
                      +||==++
T Consensus       194 vcNPPf~  200 (321)
T PRK11727        194 LCNPPFH  200 (321)
T ss_pred             EeCCCCc
Confidence            9996554

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.78  E-value=4.9e-09  Score=88.16  Aligned_cols=92  Identities=17%  Similarity=0.174  Sum_probs=62.8

Q ss_pred             eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcc-c
Q 029554           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGL-H  172 (191)
Q Consensus        94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l-~  172 (191)
                      .+||+|||+|.++..|.+++    |+.+-+++.-...++.++..  ..+....+-......+||+++.||+|.|..++ .
T Consensus       120 ~~LDvGcG~aSF~a~l~~r~----V~t~s~a~~d~~~~qvqfal--eRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~  193 (506)
T PF03141_consen  120 TALDVGCGVASFGAYLLERN----VTTMSFAPNDEHEAQVQFAL--ERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP  193 (506)
T ss_pred             EEEeccceeehhHHHHhhCC----ceEEEcccccCCchhhhhhh--hcCcchhhhhhccccccCCccchhhhhccccccc
Confidence            68999999999999999976    55555444322222222211  11111222223356799999999999999886 5


Q ss_pred             CcCChHHHHHHHHhccCCC
Q 029554          173 WTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       173 ~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |..+-...|-++.|+|+||
T Consensus       194 W~~~~g~~l~evdRvLRpG  212 (506)
T PF03141_consen  194 WHPNDGFLLFEVDRVLRPG  212 (506)
T ss_pred             chhcccceeehhhhhhccC
Confidence            6666677899999999997

; GO: 0008168 methyltransferase activity

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=5.6e-08  Score=76.31  Aligned_cols=86  Identities=13%  Similarity=0.140  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~  156 (191)
                      +.+++++...  ..++..|||||+|.|.+|..|.+++  .+|+++|+++.+++..+++..    ...++.++.+|+...+
T Consensus        18 v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d   89 (259)
T COG0030          18 VIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFD   89 (259)
T ss_pred             HHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCc
Confidence            4556665555  3357899999999999999999988  889999999999999988763    4567999999998887


Q ss_pred             CCCC-CcceEEeCCc
Q 029554          157 LKES-SLDLAISCLG  170 (191)
Q Consensus       157 ~~~~-~fDlVis~~~  170 (191)
                      ++.- .++.|++|.-
T Consensus        90 ~~~l~~~~~vVaNlP  104 (259)
T COG0030          90 FPSLAQPYKVVANLP  104 (259)
T ss_pred             chhhcCCCEEEEcCC
Confidence            7643 6889998853

>PLN02672 methionine S-methyltransferase

Probab=98.77  E-value=2.5e-08  Score=91.74  Aligned_cols=77  Identities=14%  Similarity=-0.067  Sum_probs=60.4

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc--------------CCCCceeeEecCCCCCCC
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--------------NDNIETCFVVGDEEFLPL  157 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--------------~~~~~~~~~~~d~~~l~~  157 (191)
                      +.+|||+|||+|.++..++..++..+|+++|+|+.+++.|+++.....              ....++.++++|+.....
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            358999999999999999988877899999999999999998876411              012368999999654321


Q ss_pred             C-CCCcceEEeC
Q 029554          158 K-ESSLDLAISC  168 (191)
Q Consensus       158 ~-~~~fDlVis~  168 (191)
                      . ..+||+||||
T Consensus       199 ~~~~~fDlIVSN  210 (1082)
T PLN02672        199 DNNIELDRIVGC  210 (1082)
T ss_pred             ccCCceEEEEEC
Confidence            1 2369999997

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.74  E-value=2.2e-08  Score=80.19  Aligned_cols=100  Identities=10%  Similarity=-0.041  Sum_probs=72.7

Q ss_pred             CCeEEEEcCCccHHHHHH----hhcC----CCceEEEEECChhHHHHHHHhhhh-c--------------c-------C-
Q 029554           92 FPTALCLGGSLEAVRRLL----RGRG----GIEKLIMMDTSYDMLKLCKDAQQD-A--------------H-------N-  140 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l----~~~~----~~~~v~~vD~s~~~l~~a~~~~~~-~--------------~-------~-  140 (191)
                      .-+|+..||++|.-...+    .+.+    ...+++|+|+|+.+++.|++-.-. +              .       + 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            358999999999543333    3321    135799999999999999875210 0              0       0 


Q ss_pred             ------CCCceeeEecCCCCCCCC-CCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          141 ------DNIETCFVVGDEEFLPLK-ESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       141 ------~~~~~~~~~~d~~~l~~~-~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                            ....+.|.+.|+...+++ .+.||+|+|.+++.|++  ....++.++.+.|+||
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg  255 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD  255 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence                  013568888887764433 57899999999999995  4678999999999997

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.73  E-value=5.1e-08  Score=78.75  Aligned_cols=77  Identities=16%  Similarity=0.130  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      .+..|||+|||+|.++..-++.| ..+|+++|.|.-+ +.|.+.+.. ++....+.++.+.++++.+|..++|+|+|-+.
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~-N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM  136 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKD-NGLEDVITVIKGKVEDIELPVEKVDIIVSEWM  136 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHh-cCccceEEEeecceEEEecCccceeEEeehhh
Confidence            56789999999999999988887 6789999988765 777776654 23345688999998877766789999998543

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.73  E-value=4.7e-08  Score=75.25  Aligned_cols=101  Identities=14%  Similarity=0.216  Sum_probs=70.5

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC----------------------------
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN----------------------------  142 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~----------------------------  142 (191)
                      .+..+|||||-.|.++..+++.+....++|+||++..+..|++..+.-....                            
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            4567999999999999999998878899999999999999998765310000                            


Q ss_pred             -----CceeeEecC-----CCCCCCCCCCcceEEeCCcccCc-----C-ChHHHHHHHHhccCCC
Q 029554          143 -----IETCFVVGD-----EEFLPLKESSLDLAISCLGLHWT-----N-DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       143 -----~~~~~~~~d-----~~~l~~~~~~fDlVis~~~l~~~-----~-d~~~~l~~i~r~Lkpg  191 (191)
                           .++.+...+     .+.+.+....||+|+|-.+-.|+     + -+..+++++.++|.||
T Consensus       138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pg  202 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPG  202 (288)
T ss_pred             cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcC
Confidence                 011111111     00112344679999997665554     2 2568999999999986

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.71  E-value=1.3e-07  Score=74.00  Aligned_cols=94  Identities=21%  Similarity=0.172  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHhcc-cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC-
Q 029554           75 DAVAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-  152 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~-~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~-  152 (191)
                      ++..+.+++.+.... ..+..|||+|||+|.++..+....|.+.++++|.|+..+..+.+++... .....+.++..++ 
T Consensus       131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~-~l~g~i~v~~~~me  209 (328)
T KOG2904|consen  131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRL-KLSGRIEVIHNIME  209 (328)
T ss_pred             HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHH-hhcCceEEEecccc
Confidence            344444444443211 1334799999999999999988878899999999999999999887652 1223344443332 


Q ss_pred             ----CCCCCCCCCcceEEeCC
Q 029554          153 ----EFLPLKESSLDLAISCL  169 (191)
Q Consensus       153 ----~~l~~~~~~fDlVis~~  169 (191)
                          +..+...+++|+++||-
T Consensus       210 ~d~~~~~~l~~~~~dllvsNP  230 (328)
T KOG2904|consen  210 SDASDEHPLLEGKIDLLVSNP  230 (328)
T ss_pred             cccccccccccCceeEEecCC
Confidence                23445679999999984

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.71  E-value=3.5e-08  Score=74.91  Aligned_cols=101  Identities=13%  Similarity=-0.039  Sum_probs=63.0

Q ss_pred             CCCeEEEEcCCccHHHHHH----hh---c-CC-CceEEEEECChhHHHHHHHhhh-h--------------c---cC-C-
Q 029554           91 TFPTALCLGGSLEAVRRLL----RG---R-GG-IEKLIMMDTSYDMLKLCKDAQQ-D--------------A---HN-D-  141 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l----~~---~-~~-~~~v~~vD~s~~~l~~a~~~~~-~--------------~---~~-~-  141 (191)
                      ..-+|+..||++|.-.-.|    .+   . .+ ..+++|+|+|+.+++.|++-.- .              .   .+ . 
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            4458999999999554333    33   1 11 3689999999999999987421 0              0   00 0 


Q ss_pred             ------CCceeeEecCCCCCCCCCCCcceEEeCCcccCcCCh--HHHHHHHHhccCCC
Q 029554          142 ------NIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       142 ------~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                            ...+.|...|+...+.+.+.||+|+|.++|-|+++.  ..++..+.+.|+||
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pg  168 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPG  168 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEE
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCC
Confidence                  135788888977744456889999999999999643  57899999999986

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.70  E-value=1.2e-07  Score=71.83  Aligned_cols=96  Identities=14%  Similarity=0.021  Sum_probs=69.0

Q ss_pred             eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCc-eeeEecCCCCC--C------CCCCCcce
Q 029554           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE-TCFVVGDEEFL--P------LKESSLDL  164 (191)
Q Consensus        94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~-~~~~~~d~~~l--~------~~~~~fDl  164 (191)
                      +|||||||||....++++..|.....-.|+++..+...+......  ...+ ..-+..|+...  +      +..++||+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~--~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~  105 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA--GLPNVRPPLALDVSAPPWPWELPAPLSPESFDA  105 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc--CCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence            599999999999999999999888999999988765444433221  1111 12223444322  2      23568999


Q ss_pred             EEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          165 AISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       165 Vis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      |+|.+++|-.+  ....+|+.+.++|+||
T Consensus       106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~g  134 (204)
T PF06080_consen  106 IFCINMLHISPWSAVEGLFAGAARLLKPG  134 (204)
T ss_pred             eeehhHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            99999999664  5678899999999986

The function of this family is unknown.

>PLN02476 O-methyltransferase

Probab=98.69  E-value=3.3e-07  Score=72.97  Aligned_cols=107  Identities=13%  Similarity=-0.027  Sum_probs=77.7

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC-
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP-  156 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~-  156 (191)
                      +++..+.. .....+|||+|+++|+.+..++... +..+++.+|.++...+.|++.+++. +...++.++.+|..+ ++ 
T Consensus       108 ~lL~~L~~-~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a-Gl~~~I~li~GdA~e~L~~  185 (278)
T PLN02476        108 QLLAMLVQ-ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA-GVSHKVNVKHGLAAESLKS  185 (278)
T ss_pred             HHHHHHHH-hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEEcCHHHHHHH
Confidence            33444443 2356789999999999999998653 3467999999999999999988762 233578999998643 32 


Q ss_pred             C----CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          157 L----KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ~----~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +    .+++||+|+.-..   -.+....+..+.++|+||
T Consensus       186 l~~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~G  221 (278)
T PLN02476        186 MIQNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVG  221 (278)
T ss_pred             HHhcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCC
Confidence            1    2368999997643   124567788888888886

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.68  E-value=2.1e-07  Score=74.33  Aligned_cols=98  Identities=17%  Similarity=0.161  Sum_probs=77.1

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc--CCCCceeeEecCC-CCCCCCCCCcceEEeCC
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDE-EFLPLKESSLDLAISCL  169 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~d~-~~l~~~~~~fDlVis~~  169 (191)
                      .+||-||-|.|..++.+.+..+..++++||+++..++.+++-+..+.  ...+++.++..|. +.+.-...+||+|++..
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            59999999999999999998889999999999999999999886532  1146788888884 34443334899999865


Q ss_pred             cccCcC-----ChHHHHHHHHhccCCC
Q 029554          170 GLHWTN-----DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~-----d~~~~l~~i~r~Lkpg  191 (191)
                      .=. ..     .-..+++.++++|+||
T Consensus       158 tdp-~gp~~~Lft~eFy~~~~~~L~~~  183 (282)
T COG0421         158 TDP-VGPAEALFTEEFYEGCRRALKED  183 (282)
T ss_pred             CCC-CCcccccCCHHHHHHHHHhcCCC
Confidence            533 11     1268999999999985

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.68  E-value=2.7e-08  Score=78.25  Aligned_cols=89  Identities=21%  Similarity=0.150  Sum_probs=72.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      .+..+||+|||.|..+-    ..|.+.++|+|.+...+..++....        ...+..|+..+|+.+.+||.+++..+
T Consensus        45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~--------~~~~~ad~l~~p~~~~s~d~~lsiav  112 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGG--------DNVCRADALKLPFREESFDAALSIAV  112 (293)
T ss_pred             CcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCC--------ceeehhhhhcCCCCCCccccchhhhh
Confidence            46789999999986552    2356789999999999888754321        15678899999999999999999999


Q ss_pred             ccCcC---ChHHHHHHHHhccCCC
Q 029554          171 LHWTN---DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~---d~~~~l~~i~r~Lkpg  191 (191)
                      +||+-   ....+++++.++|+||
T Consensus       113 ihhlsT~~RR~~~l~e~~r~lrpg  136 (293)
T KOG1331|consen  113 IHHLSTRERRERALEELLRVLRPG  136 (293)
T ss_pred             hhhhhhHHHHHHHHHHHHHHhcCC
Confidence            99984   3467999999999996

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.67  E-value=1e-07  Score=82.21  Aligned_cols=99  Identities=9%  Similarity=-0.017  Sum_probs=81.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC--CCCCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL--PLKESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l--~~~~~~fDlVis~  168 (191)
                      ....+||||||.|.++..++...|...++|+|++...+..+.++...  ....++.++..|++.+  -++++++|.|+.+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~--~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~  424 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGE--QNITNFLLFPNNLDLILNDLPNNSLDGIYIL  424 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence            45689999999999999999999999999999999988888777654  3445777887776532  2678899999999


Q ss_pred             CcccCcCC--------hHHHHHHHHhccCCC
Q 029554          169 LGLHWTND--------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d--------~~~~l~~i~r~Lkpg  191 (191)
                      +-=-|...        -+.++..+.++||||
T Consensus       425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~g  455 (506)
T PRK01544        425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDN  455 (506)
T ss_pred             CCCCCCCCCCccccccCHHHHHHHHHhcCCC
Confidence            98777542        357899999999997

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.66  E-value=2.6e-07  Score=67.40  Aligned_cols=106  Identities=19%  Similarity=0.128  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l  155 (191)
                      +++.+...+.  ...+.-|||+|.|||-++..+..++ +...++.+|.|++.+....+....       +.++.+|...+
T Consensus        36 lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~-------~~ii~gda~~l  106 (194)
T COG3963          36 LARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG-------VNIINGDAFDL  106 (194)
T ss_pred             HHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC-------ccccccchhhH
Confidence            3444444444  3456679999999999999998775 467899999999999999887643       56788887655


Q ss_pred             C-----CCCCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          156 P-----LKESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       156 ~-----~~~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      .     +++..||.|||..-+-.++  -..+.+.++...|.+|
T Consensus       107 ~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~g  149 (194)
T COG3963         107 RTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAG  149 (194)
T ss_pred             HHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCC
Confidence            3     6677899999987766654  2345677776666543

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.65  E-value=1.6e-07  Score=73.62  Aligned_cols=104  Identities=15%  Similarity=0.047  Sum_probs=76.3

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhh-cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK  158 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~-~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~  158 (191)
                      -++..+.  ..|+.+|||.|.|+|.++..|+. .+|..+|+..|+.++..+.|++.++.+ ....++.+...|+....|.
T Consensus        31 ~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~-gl~~~v~~~~~Dv~~~g~~  107 (247)
T PF08704_consen   31 YILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH-GLDDNVTVHHRDVCEEGFD  107 (247)
T ss_dssp             HHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT-TCCTTEEEEES-GGCG--S
T ss_pred             HHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc-CCCCCceeEecceeccccc
Confidence            3444444  56899999999999999999985 467789999999999999999998763 2345789999997543332


Q ss_pred             ---CCCcceEEeCCcccCcCChHHHHHHHHhcc-CCC
Q 029554          159 ---ESSLDLAISCLGLHWTNDLPGAMIQVSIFL-LPD  191 (191)
Q Consensus       159 ---~~~fDlVis~~~l~~~~d~~~~l~~i~r~L-kpg  191 (191)
                         +..+|.|+.-     +++|..++..+.++| +||
T Consensus       108 ~~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~g  139 (247)
T PF08704_consen  108 EELESDFDAVFLD-----LPDPWEAIPHAKRALKKPG  139 (247)
T ss_dssp             TT-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEE
T ss_pred             ccccCcccEEEEe-----CCCHHHHHHHHHHHHhcCC
Confidence               3679999854     568888999999999 665

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.62  E-value=1.4e-07  Score=75.86  Aligned_cols=89  Identities=22%  Similarity=0.148  Sum_probs=68.9

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~  156 (191)
                      ..++++.+.  ..++..+||.+||.|..+..+++.++ ..+|+|+|.++.+++.++++...    ..++.++.+++..+.
T Consensus         8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~----~~ri~~i~~~f~~l~   81 (296)
T PRK00050          8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP----FGRFTLVHGNFSNLK   81 (296)
T ss_pred             HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc----CCcEEEEeCCHHHHH
Confidence            445565655  45778999999999999999998764 57999999999999999887642    346889999877542


Q ss_pred             --CCCC--CcceEEeCCccc
Q 029554          157 --LKES--SLDLAISCLGLH  172 (191)
Q Consensus       157 --~~~~--~fDlVis~~~l~  172 (191)
                        .+++  ++|.|+..+++.
T Consensus        82 ~~l~~~~~~vDgIl~DLGvS  101 (296)
T PRK00050         82 EVLAEGLGKVDGILLDLGVS  101 (296)
T ss_pred             HHHHcCCCccCEEEECCCcc
Confidence              1222  799999987653

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.62  E-value=4.6e-07  Score=76.91  Aligned_cols=98  Identities=16%  Similarity=0.178  Sum_probs=67.4

Q ss_pred             CCeEEEEcCCccHHHHHHhhcC----CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEe
Q 029554           92 FPTALCLGGSLEAVRRLLRGRG----GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAIS  167 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~----~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis  167 (191)
                      ...|||||||+|.+.....+.+    ...+|+++|-|+.+....+++... .+-..+++++.+|++.+..+ .++|+|||
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~-n~w~~~V~vi~~d~r~v~lp-ekvDIIVS  264 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA-NGWGDKVTVIHGDMREVELP-EKVDIIVS  264 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH-TTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh-cCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence            4679999999999987665442    347999999999887776655332 12346799999999988765 48999999


Q ss_pred             CC--cccCcCChHHHHHHHHhccCCC
Q 029554          168 CL--GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~--~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      -.  ++-.-+-.+..|....+.||||
T Consensus       265 ElLGsfg~nEl~pE~Lda~~rfLkp~  290 (448)
T PF05185_consen  265 ELLGSFGDNELSPECLDAADRFLKPD  290 (448)
T ss_dssp             ---BTTBTTTSHHHHHHHGGGGEEEE
T ss_pred             eccCCccccccCHHHHHHHHhhcCCC
Confidence            42  2222223567788888899875

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PLN02823 spermine synthase

Probab=98.61  E-value=5.3e-07  Score=73.87  Aligned_cols=101  Identities=17%  Similarity=0.219  Sum_probs=74.0

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC--CCCceeeEecCCC-CCCCCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN--DNIETCFVVGDEE-FLPLKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~~~~d~~-~l~~~~~~fDlVis  167 (191)
                      .+.+||.+|+|.|.....+.+..+..+++++|+++.+++.|++.+.....  ...++.++.+|.. .+....++||+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            35689999999999999888766668999999999999999987753111  2457888988854 34444578999998


Q ss_pred             CCcccCcCC------hHHHHH-HHHhccCCC
Q 029554          168 CLGLHWTND------LPGAMI-QVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d------~~~~l~-~i~r~Lkpg  191 (191)
                      -..=.+...      -..+++ .+.++|+||
T Consensus       183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~  213 (336)
T PLN02823        183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPG  213 (336)
T ss_pred             cCCCccccCcchhhccHHHHHHHHHHhcCCC
Confidence            742111001      235677 889999986

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.61  E-value=1.7e-07  Score=70.31  Aligned_cols=118  Identities=17%  Similarity=0.078  Sum_probs=76.3

Q ss_pred             CchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCc---------eEEEEECChhHHHHHHHhhhhccC
Q 029554           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIE---------KLIMMDTSYDMLKLCKDAQQDAHN  140 (191)
Q Consensus        70 ~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~---------~v~~vD~s~~~l~~a~~~~~~~~~  140 (191)
                      ...+...++.-|+....  ..++..|||--||+|.+....+..+...         +++|.|+++.+++.++++.... +
T Consensus         9 ~a~L~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a-g   85 (179)
T PF01170_consen    9 PAPLRPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA-G   85 (179)
T ss_dssp             STSS-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT-T
T ss_pred             CCCCCHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc-c
Confidence            34566677766775544  3467799999999999876554333223         3999999999999999988651 2


Q ss_pred             CCCceeeEecCCCCCCCCCCCcceEEeCCcccC-cC---Ch----HHHHHHHHhccCC
Q 029554          141 DNIETCFVVGDEEFLPLKESSLDLAISCLGLHW-TN---DL----PGAMIQVSIFLLP  190 (191)
Q Consensus       141 ~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~-~~---d~----~~~l~~i~r~Lkp  190 (191)
                      ....+.+.+.|+..+++.++++|.||+|--.-- +.   +.    ..+++++.++|++
T Consensus        86 ~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~  143 (179)
T PF01170_consen   86 VEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP  143 (179)
T ss_dssp             -CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred             cCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence            334588899999999877789999999843321 11   11    2456777777765

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.58  E-value=6.1e-07  Score=69.66  Aligned_cols=40  Identities=18%  Similarity=0.194  Sum_probs=34.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHH
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKL  130 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~  130 (191)
                      ..+.+|||+|||||.++..+++.+ ..+|+++|+++.|+..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~  113 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHH
Confidence            356689999999999999999874 5789999999988876

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.49  E-value=1.6e-06  Score=68.79  Aligned_cols=117  Identities=14%  Similarity=0.044  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHhccc-CCCeEEEEcCCccHH----HHHHhhcCC-----CceEEEEECChhHHHHHHHhh-h-----h-
Q 029554           75 DAVAENLLDRLEDCRK-TFPTALCLGGSLEAV----RRLLRGRGG-----IEKLIMMDTSYDMLKLCKDAQ-Q-----D-  137 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~~-~~~~VLDlGcG~G~~----~~~l~~~~~-----~~~v~~vD~s~~~l~~a~~~~-~-----~-  137 (191)
                      ..+.+.++..+..... ..-+|+..||++|.-    +..|.+.++     ..+++++|+|...++.|+.-. .     + 
T Consensus        79 ~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~  158 (268)
T COG1352          79 EELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRG  158 (268)
T ss_pred             HHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhcc
Confidence            3345555555543222 255899999999944    333344332     478999999999999997532 1     0 


Q ss_pred             -----------cc-CC--------CCceeeEecCCCCCCCCCCCcceEEeCCcccCcCC--hHHHHHHHHhccCCC
Q 029554          138 -----------AH-ND--------NIETCFVVGDEEFLPLKESSLDLAISCLGLHWTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       138 -----------~~-~~--------~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d--~~~~l~~i~r~Lkpg  191 (191)
                                 .. ..        ...+.|...|+...++..+.||+|+|-++|-|++.  ...++..++..|+||
T Consensus       159 ~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~g  234 (268)
T COG1352         159 LPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPG  234 (268)
T ss_pred             CCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCC
Confidence                       00 00        13467777886655535578999999999999964  457899999999987

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.48  E-value=1.5e-06  Score=72.47  Aligned_cols=94  Identities=14%  Similarity=-0.019  Sum_probs=68.6

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcc
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGL  171 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l  171 (191)
                      ..+|||++||+|..+..++...+..+|+++|+++..++.++++++.  +...++.+...|+..+-...+.||+|+.+- .
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~--N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLEL--NGLENEKVFNKDANALLHEERKFDVVDIDP-F  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--hCCCceEEEhhhHHHHHhhcCCCCEEEECC-C
Confidence            4589999999999999997765456899999999999999988765  344456688888764321145799999853 1


Q ss_pred             cCcCChHHHHHHHHhccCCC
Q 029554          172 HWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       172 ~~~~d~~~~l~~i~r~Lkpg  191 (191)
                         ..+..++....+.++||
T Consensus       135 ---Gs~~~~l~~al~~~~~~  151 (382)
T PRK04338        135 ---GSPAPFLDSAIRSVKRG  151 (382)
T ss_pred             ---CCcHHHHHHHHHHhcCC
Confidence               34456666655555553

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.45  E-value=9e-07  Score=73.18  Aligned_cols=58  Identities=9%  Similarity=-0.075  Sum_probs=49.8

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      .+|||++||+|.++..|++..  .+|+++|+++.+++.++++...  +...++.++.+|++.
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~--~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAA--NNIDNVQIIRMSAEE  256 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHH--cCCCcEEEEEcCHHH
Confidence            479999999999999998876  6999999999999999998865  344568899998764

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.45  E-value=1.5e-06  Score=69.05  Aligned_cols=90  Identities=23%  Similarity=0.246  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC
Q 029554           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE  152 (191)
Q Consensus        73 ~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~  152 (191)
                      ....+++.+++.+.  ..++..|||+|+|+|.++..|.+.+  .+++++|+++.+.+..++++.    ...++.++.+|+
T Consensus        14 ~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~----~~~~~~vi~~D~   85 (262)
T PF00398_consen   14 VDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA----SNPNVEVINGDF   85 (262)
T ss_dssp             EHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT----TCSSEEEEES-T
T ss_pred             CCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh----hcccceeeecch
Confidence            35567778887776  3477899999999999999999988  999999999999999988763    456699999998


Q ss_pred             CCCCCCC---CCcceEEeCCc
Q 029554          153 EFLPLKE---SSLDLAISCLG  170 (191)
Q Consensus       153 ~~l~~~~---~~fDlVis~~~  170 (191)
                      ..+....   ..-..|++|.-
T Consensus        86 l~~~~~~~~~~~~~~vv~NlP  106 (262)
T PF00398_consen   86 LKWDLYDLLKNQPLLVVGNLP  106 (262)
T ss_dssp             TTSCGGGHCSSSEEEEEEEET
T ss_pred             hccccHHhhcCCceEEEEEec
Confidence            8776543   35567887744

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.45  E-value=1.3e-06  Score=68.61  Aligned_cols=107  Identities=12%  Similarity=-0.014  Sum_probs=76.7

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPL  157 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~  157 (191)
                      +++..+.. .....+|||||+++|+.+..++... +..+++.+|.++...+.|++.+... +...++.++.++..+ ++-
T Consensus        69 ~lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a-g~~~~I~~~~G~a~e~L~~  146 (247)
T PLN02589         69 QFLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA-GVAHKIDFREGPALPVLDQ  146 (247)
T ss_pred             HHHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC-CCCCceEEEeccHHHHHHH
Confidence            44444443 2356789999999999999887653 4579999999999999999888752 234679999998543 321


Q ss_pred             ------CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          158 ------KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       158 ------~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                            ..++||+|+.-..   -......+..+.+.|+||
T Consensus       147 l~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~G  183 (247)
T PLN02589        147 MIEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVG  183 (247)
T ss_pred             HHhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCC
Confidence                  1368999997543   123456677777888886

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.45  E-value=7.1e-07  Score=74.04  Aligned_cols=58  Identities=10%  Similarity=-0.087  Sum_probs=49.6

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      .+|||++||+|.++..+++..  .+|+++|+++.+++.+++++..  +...++.++.+|+..
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~--~~~~~v~~~~~d~~~  265 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAA--NGIDNVQIIRMSAEE  265 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHH--hCCCcEEEEECCHHH
Confidence            579999999999999998876  7999999999999999988765  334478899998754

>PRK00536 speE spermidine synthase; Provisional

Probab=98.41  E-value=4.8e-06  Score=65.85  Aligned_cols=110  Identities=12%  Similarity=-0.006  Sum_probs=76.0

Q ss_pred             CCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC--CCCcee
Q 029554           69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN--DNIETC  146 (191)
Q Consensus        69 ~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~  146 (191)
                      ..++.+.++..+.. .+.  ...+.+||=+|.|.|...+.+.+.-  .+|++||+++.+++.+++-++.+..  ..+++.
T Consensus        53 ~dEfiYHEmLvHpp-l~~--h~~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~  127 (262)
T PRK00536         53 NFLHIESELLAHMG-GCT--KKELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFT  127 (262)
T ss_pred             chhhhHHHHHHHHH-Hhh--CCCCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEE
Confidence            34555555543333 222  2245799999999999999999874  5999999999999999996654322  234455


Q ss_pred             eEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          147 FVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       147 ~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++. .+..  ...++||+||+-..     ....+.+.+.++|+||
T Consensus       128 l~~-~~~~--~~~~~fDVIIvDs~-----~~~~fy~~~~~~L~~~  164 (262)
T PRK00536        128 HAK-QLLD--LDIKKYDLIICLQE-----PDIHKIDGLKRMLKED  164 (262)
T ss_pred             Eee-hhhh--ccCCcCCEEEEcCC-----CChHHHHHHHHhcCCC
Confidence            553 1111  12368999998743     3477889999999986

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.41  E-value=6.2e-06  Score=62.36  Aligned_cols=76  Identities=11%  Similarity=-0.051  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC-C-CC-CCcceEE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP-L-KE-SSLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~-~-~~-~~fDlVi  166 (191)
                      .+.+|||++||+|.++..+..++ ..+|+++|.++.+++.+++++... ....++.++.+|+.. +. + .. ..||+|+
T Consensus        49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~-~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~  126 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALL-KSGEQAEVVRNSALRALKFLAKKPTFDNVIY  126 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHh-CCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence            56789999999999999999887 358999999999999999887652 122357888888732 22 1 12 2478887


Q ss_pred             eC
Q 029554          167 SC  168 (191)
Q Consensus       167 s~  168 (191)
                      ..
T Consensus       127 ~D  128 (189)
T TIGR00095       127 LD  128 (189)
T ss_pred             EC
Confidence            64

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.39  E-value=4.9e-06  Score=58.73  Aligned_cols=92  Identities=30%  Similarity=0.388  Sum_probs=63.6

Q ss_pred             EEEEcCCccHHHHHHhhcCCC-ceEEEEECChhHHHHHHHhhhhccCCCCc-eeeEecCCCC--CCCCC-CCcceEEeCC
Q 029554           95 ALCLGGSLEAVRRLLRGRGGI-EKLIMMDTSYDMLKLCKDAQQDAHNDNIE-TCFVVGDEEF--LPLKE-SSLDLAISCL  169 (191)
Q Consensus        95 VLDlGcG~G~~~~~l~~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~~-~~~~~~d~~~--l~~~~-~~fDlVis~~  169 (191)
                      ++|+|||+|... .+....+. ..++++|+++.++...+....   ..... +.+...+...  +++.. ..||++.+..
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  127 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAE---GAGLGLVDFVVADALGGVLPFEDSASFDLVISLL  127 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhh---hcCCCceEEEEeccccCCCCCCCCCceeEEeeee
Confidence            999999999965 33332211 479999999999988544331   11111 5677777664  77776 4899994444


Q ss_pred             cccCcCChHHHHHHHHhccCCC
Q 029554          170 GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .+++.. ....+.++.++|+|+
T Consensus       128 ~~~~~~-~~~~~~~~~~~l~~~  148 (257)
T COG0500         128 VLHLLP-PAKALRELLRVLKPG  148 (257)
T ss_pred             ehhcCC-HHHHHHHHHHhcCCC
Confidence            455554 888999999999874

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.38  E-value=8.1e-07  Score=73.35  Aligned_cols=101  Identities=15%  Similarity=0.087  Sum_probs=83.1

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..++..++|+|||.|.....+... ..+.++|+|.++..+.++....... ....+..++..|+..-|+++..||.|.+.
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~-~l~~k~~~~~~~~~~~~fedn~fd~v~~l  185 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKA-YLDNKCNFVVADFGKMPFEDNTFDGVRFL  185 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHH-HhhhhcceehhhhhcCCCCccccCcEEEE
Confidence            346668999999999999888654 3588999999998887776554321 12234555778899999999999999999


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      -+.+|.+++..++.|+.++++||
T Consensus       186 d~~~~~~~~~~~y~Ei~rv~kpG  208 (364)
T KOG1269|consen  186 EVVCHAPDLEKVYAEIYRVLKPG  208 (364)
T ss_pred             eecccCCcHHHHHHHHhcccCCC
Confidence            99999999999999999999997

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=3.1e-06  Score=63.97  Aligned_cols=104  Identities=13%  Similarity=0.027  Sum_probs=73.6

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc--CCCceEEEEECChhHHHHHHHhhhhccC--------CCCceeeE
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR--GGIEKLIMMDTSYDMLKLCKDAQQDAHN--------DNIETCFV  148 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~~v~~vD~s~~~l~~a~~~~~~~~~--------~~~~~~~~  148 (191)
                      ..+++.|.....|+.+.||+|+|+|+++..+...  .+....+|+|.-++.++.+++++..+-.        ...+..++
T Consensus        70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv  149 (237)
T KOG1661|consen   70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV  149 (237)
T ss_pred             HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence            3445555544568999999999999998877632  2235569999999999999998865321        12457888


Q ss_pred             ecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHH
Q 029554          149 VGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQV  184 (191)
Q Consensus       149 ~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i  184 (191)
                      ++|....-.+..+||.|.+..+..-  .++..+.++
T Consensus       150 vGDgr~g~~e~a~YDaIhvGAaa~~--~pq~l~dqL  183 (237)
T KOG1661|consen  150 VGDGRKGYAEQAPYDAIHVGAAASE--LPQELLDQL  183 (237)
T ss_pred             eCCccccCCccCCcceEEEccCccc--cHHHHHHhh
Confidence            9998777667789999999855432  234444443

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.34  E-value=1.1e-05  Score=65.28  Aligned_cols=97  Identities=18%  Similarity=0.226  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC-
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL-  169 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~-  169 (191)
                      .+..|||+|||.|.++...+..| .++|++++.| +|.+.|++-... ++...++.++.+-+|++.+| ++.|+||+-- 
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~-N~~~~rItVI~GKiEdieLP-Ek~DviISEPM  252 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVAS-NNLADRITVIPGKIEDIELP-EKVDVIISEPM  252 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhc-CCccceEEEccCccccccCc-hhccEEEeccc
Confidence            45689999999999999888776 5789999976 477777776654 35567899999999988876 6799999842 


Q ss_pred             cccCcC-ChHHHHHHHHhccCCC
Q 029554          170 GLHWTN-DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~-d~~~~l~~i~r~Lkpg  191 (191)
                      +..-++ ..-...-..++.|||.
T Consensus       253 G~mL~NERMLEsYl~Ark~l~P~  275 (517)
T KOG1500|consen  253 GYMLVNERMLESYLHARKWLKPN  275 (517)
T ss_pred             hhhhhhHHHHHHHHHHHhhcCCC
Confidence            211122 2233344455788873

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.34  E-value=2.4e-06  Score=67.23  Aligned_cols=101  Identities=18%  Similarity=0.197  Sum_probs=71.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC--CCCceeeEecCCC-CCCCCCC-CcceEE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN--DNIETCFVVGDEE-FLPLKES-SLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~~~~d~~-~l~~~~~-~fDlVi  166 (191)
                      .+.+||-||.|.|.....+.+..+..++++||+++.+++.|++-+.....  ...++.++..|.. .+.-... .||+|+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi  155 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII  155 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence            57799999999999999998876678999999999999999987654221  2457888888843 2322234 899999


Q ss_pred             eCCcccCcCC----hHHHHHHHHhccCCC
Q 029554          167 SCLGLHWTND----LPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~~~d----~~~~l~~i~r~Lkpg  191 (191)
                      .-..-.....    -..+++.+.++|+||
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~  184 (246)
T PF01564_consen  156 VDLTDPDGPAPNLFTREFYQLCKRRLKPD  184 (246)
T ss_dssp             EESSSTTSCGGGGSSHHHHHHHHHHEEEE
T ss_pred             EeCCCCCCCcccccCHHHHHHHHhhcCCC
Confidence            8544322111    257889999999875

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.31  E-value=5.8e-06  Score=66.09  Aligned_cols=95  Identities=18%  Similarity=0.102  Sum_probs=58.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC-CCCCCCCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFLPLKESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~~fDlVis~  168 (191)
                      .+.+|||+|||+|..+-.+.+..+ ..+++++|.|+.|++.++.-.... ............. +..++.  ..|+|+++
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~--~~DLvi~s  109 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG-PNNRNAEWRRVLYRDFLPFP--PDDLVIAS  109 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc-cccccchhhhhhhcccccCC--CCcEEEEe
Confidence            456899999999987666655432 578999999999999988765431 1111111111111 112222  33999999


Q ss_pred             CcccCcCC--hHHHHHHHHhcc
Q 029554          169 LGLHWTND--LPGAMIQVSIFL  188 (191)
Q Consensus       169 ~~l~~~~d--~~~~l~~i~r~L  188 (191)
                      ++|..+++  ...+++++.+.+
T Consensus       110 ~~L~EL~~~~r~~lv~~LW~~~  131 (274)
T PF09243_consen  110 YVLNELPSAARAELVRSLWNKT  131 (274)
T ss_pred             hhhhcCCchHHHHHHHHHHHhc
Confidence            99988876  223455544333

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.29  E-value=5e-06  Score=65.91  Aligned_cols=99  Identities=15%  Similarity=0.126  Sum_probs=74.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh---------------cc----------------
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD---------------AH----------------  139 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~---------------~~----------------  139 (191)
                      ...+||--|||.|+++-.++..+  -.+.|.|.|--|+-...=....               +.                
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            35689999999999999999987  8999999999996554321110               00                


Q ss_pred             -------CCCCceeeEecCCCCCCCCC---CCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          140 -------NDNIETCFVVGDEEFLPLKE---SSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       140 -------~~~~~~~~~~~d~~~l~~~~---~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                             ....++....+|+...-.++   ++||.|++++-+.-..+....+..|.++||||
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpg  195 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPG  195 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccC
Confidence                   01224555566665543333   79999999988888888999999999999997

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=5.5e-06  Score=70.08  Aligned_cols=85  Identities=19%  Similarity=0.140  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~  156 (191)
                      +....++.+.  ..+..++||+=||.|.++..|++..  .+|+|+|+++.+++.|+++++.  +...++.|..++.+...
T Consensus       281 l~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~--n~i~N~~f~~~~ae~~~  354 (432)
T COG2265         281 LYETALEWLE--LAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAA--NGIDNVEFIAGDAEEFT  354 (432)
T ss_pred             HHHHHHHHHh--hcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHH--cCCCcEEEEeCCHHHHh
Confidence            3334444444  3456789999999999999999876  9999999999999999999876  66777999999987654


Q ss_pred             CC---CCCcceEEe
Q 029554          157 LK---ESSLDLAIS  167 (191)
Q Consensus       157 ~~---~~~fDlVis  167 (191)
                      ..   ...+|.|+.
T Consensus       355 ~~~~~~~~~d~Vvv  368 (432)
T COG2265         355 PAWWEGYKPDVVVV  368 (432)
T ss_pred             hhccccCCCCEEEE
Confidence            22   347899986

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.27  E-value=2.4e-06  Score=65.29  Aligned_cols=110  Identities=16%  Similarity=0.116  Sum_probs=63.2

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh-------ccCCCCceeeEecC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD-------AHNDNIETCFVVGD  151 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~~~~~~~~~~~~d  151 (191)
                      ..+++.+.  ..+....+|||||.|......+-..+..+++|+|+.+...+.+++....       ++....++.+..+|
T Consensus        32 ~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd  109 (205)
T PF08123_consen   32 SKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD  109 (205)
T ss_dssp             HHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred             HHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence            34555554  4467899999999999877666554567799999999988777653322       22334567778888


Q ss_pred             CCCCCCCC---CCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          152 EEFLPLKE---SSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       152 ~~~l~~~~---~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +...++..   ...|+|++|..+- -+++...+.++..-||||
T Consensus       110 fl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G  151 (205)
T PF08123_consen  110 FLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPG  151 (205)
T ss_dssp             TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT
T ss_pred             ccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCC
Confidence            65432111   3469999987642 335556667777777776

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.25  E-value=9.6e-06  Score=66.02  Aligned_cols=113  Identities=17%  Similarity=0.075  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEec-C
Q 029554           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG-D  151 (191)
Q Consensus        73 ~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-d  151 (191)
                      +...++.-++....  .+++..|||==||||.+.....-.|  .+++|+|++..|+.-++.+++.  -......+... |
T Consensus       181 ~~P~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~G--~~viG~Did~~mv~gak~Nl~~--y~i~~~~~~~~~D  254 (347)
T COG1041         181 MDPRLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLMG--ARVIGSDIDERMVRGAKINLEY--YGIEDYPVLKVLD  254 (347)
T ss_pred             cCHHHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhcC--ceEeecchHHHHHhhhhhhhhh--hCcCceeEEEecc
Confidence            44455544553333  4578899999999999998887777  9999999999999999998875  22344545555 9


Q ss_pred             CCCCCCCCCCcceEEeCC--c----ccCc--CC-hHHHHHHHHhccCCC
Q 029554          152 EEFLPLKESSLDLAISCL--G----LHWT--ND-LPGAMIQVSIFLLPD  191 (191)
Q Consensus       152 ~~~l~~~~~~fDlVis~~--~----l~~~--~d-~~~~l~~i~r~Lkpg  191 (191)
                      +..+|+++.++|.|++--  +    ..-.  ++ ...++..+.++|++|
T Consensus       255 a~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~g  303 (347)
T COG1041         255 ATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPG  303 (347)
T ss_pred             cccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcC
Confidence            999999988899999832  1    1111  12 356888999999885

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.24  E-value=3.5e-06  Score=64.15  Aligned_cols=96  Identities=14%  Similarity=0.047  Sum_probs=62.5

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..++..|||+-||-|.++..+++....+.|+++|++|..++.+++.... ++....+..+.+|...+.. .+.||-|+++
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~l-Nkv~~~i~~~~~D~~~~~~-~~~~drvim~  176 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRL-NKVENRIEVINGDAREFLP-EGKFDRVIMN  176 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHH-TT-TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHH-cCCCCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence            4478899999999999999999855558999999999999999888765 2233457888999877654 6889999987


Q ss_pred             CcccCcCChHHHHHHHHhccCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                      .--.    ...++..+.+++++
T Consensus       177 lp~~----~~~fl~~~~~~~~~  194 (200)
T PF02475_consen  177 LPES----SLEFLDAALSLLKE  194 (200)
T ss_dssp             -TSS----GGGGHHHHHHHEEE
T ss_pred             ChHH----HHHHHHHHHHHhcC
Confidence            5322    12344555555543

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.23  E-value=1.8e-05  Score=56.90  Aligned_cols=85  Identities=20%  Similarity=0.222  Sum_probs=60.2

Q ss_pred             cCCCeEEEEcCCccHHHHHHhh-----cCCCceEEEEECChhHHHHHHHhhhhccCCC-CceeeEecCCCCCCCCCCCcc
Q 029554           90 KTFPTALCLGGSLEAVRRLLRG-----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKESSLD  163 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~-----~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~d~~~l~~~~~~fD  163 (191)
                      .+..+|+|+|||.|+++..|+.     . +..+|+++|.++..++.+.++...+.... .+..+...+....+ .....+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  101 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD  101 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence            4567899999999999999987     4 56899999999999999988876533222 44555655544332 134566


Q ss_pred             eEEeCCcccCcCChHH
Q 029554          164 LAISCLGLHWTNDLPG  179 (191)
Q Consensus       164 lVis~~~l~~~~d~~~  179 (191)
                      +++.   ||-..|+..
T Consensus       102 ~~vg---LHaCG~Ls~  114 (141)
T PF13679_consen  102 ILVG---LHACGDLSD  114 (141)
T ss_pred             EEEE---eecccchHH
Confidence            6664   666666643

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.23  E-value=8.4e-06  Score=61.29  Aligned_cols=93  Identities=13%  Similarity=0.038  Sum_probs=65.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ...+|+|+|+|.|.=+..|+=..|..+++.+|.+..-+...+.-....  .-.++.++...++. +.....||+|++..+
T Consensus        48 ~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L--~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv  124 (184)
T PF02527_consen   48 FGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL--GLSNVEVINGRAEE-PEYRESFDVVTARAV  124 (184)
T ss_dssp             CCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH--T-SSEEEEES-HHH-TTTTT-EEEEEEESS
T ss_pred             CCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh--CCCCEEEEEeeecc-cccCCCccEEEeehh
Confidence            333899999999988888877778899999999998666665544431  23468889988887 445688999998765


Q ss_pred             ccCcCChHHHHHHHHhccCC
Q 029554          171 LHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       171 l~~~~d~~~~l~~i~r~Lkp  190 (191)
                      -    .+...+.-+...|++
T Consensus       125 ~----~l~~l~~~~~~~l~~  140 (184)
T PF02527_consen  125 A----PLDKLLELARPLLKP  140 (184)
T ss_dssp             S----SHHHHHHHHGGGEEE
T ss_pred             c----CHHHHHHHHHHhcCC
Confidence            3    455666666666655

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.19  E-value=7.6e-06  Score=67.68  Aligned_cols=58  Identities=17%  Similarity=0.143  Sum_probs=46.1

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      .+|||+=||.|.++..|++.+  .+|+|+|+++.+++.|++++..  +...++.|+.++.+.
T Consensus       198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~--N~i~n~~f~~~~~~~  255 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKL--NGIDNVEFIRGDAED  255 (352)
T ss_dssp             TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHH--TT--SEEEEE--SHH
T ss_pred             CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHH--cCCCcceEEEeeccc
Confidence            379999999999999999987  8999999999999999998876  666788998876543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.19  E-value=1.8e-06  Score=66.30  Aligned_cols=101  Identities=17%  Similarity=0.065  Sum_probs=72.3

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCc-eEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC--CCCCCCcceE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIE-KLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL--PLKESSLDLA  165 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l--~~~~~~fDlV  165 (191)
                      .+.+.+|||.+.|.|+.+....+++  + +|+.++.++..++.|.-+-=...-....+.++.+|..+.  .|++.+||+|
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rG--A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI  209 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERG--AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI  209 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcC--CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence            3468899999999999999888888  6 999999999999888543211011123578899996542  4788999999


Q ss_pred             EeC---CcccCcCChHHHHHHHHhccCCC
Q 029554          166 ISC---LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       166 is~---~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |-.   +++.----...+.+|+.|+||||
T Consensus       210 iHDPPRfS~AgeLYseefY~El~RiLkrg  238 (287)
T COG2521         210 IHDPPRFSLAGELYSEEFYRELYRILKRG  238 (287)
T ss_pred             eeCCCccchhhhHhHHHHHHHHHHHcCcC
Confidence            742   12111001346899999999997

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.18  E-value=1.5e-05  Score=64.90  Aligned_cols=84  Identities=17%  Similarity=0.096  Sum_probs=58.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-CCCCCCCCcceEEeC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLPLKESSLDLAISC  168 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~l~~~~~~fDlVis~  168 (191)
                      .++.++|||||++|.++..|.+++  .+|++||..+ |-...        ....++.....|.. ..| +.+.+|+|+|-
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~-l~~~L--------~~~~~V~h~~~d~fr~~p-~~~~vDwvVcD  277 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGP-MAQSL--------MDTGQVEHLRADGFKFRP-PRKNVDWLVCD  277 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechh-cCHhh--------hCCCCEEEEeccCcccCC-CCCCCCEEEEe
Confidence            477899999999999999999988  7999999554 22222        13445777777743 443 36789999997


Q ss_pred             CcccCcCChHHHHHHHHhccC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLL  189 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lk  189 (191)
                      .+..    |..+..-+.+.|.
T Consensus       278 mve~----P~rva~lm~~Wl~  294 (357)
T PRK11760        278 MVEK----PARVAELMAQWLV  294 (357)
T ss_pred             cccC----HHHHHHHHHHHHh
Confidence            6633    4555555555543

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.11  E-value=4.9e-07  Score=68.23  Aligned_cols=86  Identities=21%  Similarity=0.189  Sum_probs=68.8

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcc
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGL  171 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l  171 (191)
                      +.++||+|+|.|..+..++..+  .+|.+++.|..|..+.+++.-.          +.+..+.+. .+-+||+|.|-..|
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk~yn----------Vl~~~ew~~-t~~k~dli~clNlL  179 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKKNYN----------VLTEIEWLQ-TDVKLDLILCLNLL  179 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhcCCc----------eeeehhhhh-cCceeehHHHHHHH
Confidence            4589999999999999999877  8999999999999998765311          112223222 23469999999999


Q ss_pred             cCcCChHHHHHHHHhccCC
Q 029554          172 HWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       172 ~~~~d~~~~l~~i~r~Lkp  190 (191)
                      .-..|+...+..|..+|+|
T Consensus       180 DRc~~p~kLL~Di~~vl~p  198 (288)
T KOG3987|consen  180 DRCFDPFKLLEDIHLVLAP  198 (288)
T ss_pred             HhhcChHHHHHHHHHHhcc
Confidence            8888999999999999987

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.11  E-value=4.1e-06  Score=61.59  Aligned_cols=72  Identities=18%  Similarity=0.116  Sum_probs=51.2

Q ss_pred             eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-C-CCCCC-cceEEeC
Q 029554           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-P-LKESS-LDLAISC  168 (191)
Q Consensus        94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~-~~~~~-fDlVis~  168 (191)
                      .|+|+.||.|..+..++..+  .+|+++|+++..++.++.++.- .....++.++++|...+ + +.... ||+|+++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~v-YGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEV-YGVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHH-TT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            58999999999999999987  8999999999999999988764 12356799999996543 1 22222 8999864

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.09  E-value=9.2e-06  Score=67.68  Aligned_cols=100  Identities=18%  Similarity=0.093  Sum_probs=74.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-CCC---CCCCCcceEE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP---LKESSLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~l~---~~~~~fDlVi  166 (191)
                      .+.+||++=|=||.++...+..| ..+|+.||.|...++.|+++++..+-...+..++++|+- .+.   -...+||+||
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi  295 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII  295 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence            38899999999999999888766 349999999999999999998762223456889999954 332   2335899999


Q ss_pred             eC---C-----cc-cCcCChHHHHHHHHhccCCC
Q 029554          167 SC---L-----GL-HWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~---~-----~l-~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .-   +     .. .-..|....+..+.++|+||
T Consensus       296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pg  329 (393)
T COG1092         296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPG  329 (393)
T ss_pred             ECCcccccCcccchhHHHHHHHHHHHHHHHcCCC
Confidence            72   1     11 11235667788888888886

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.09  E-value=2.5e-05  Score=63.47  Aligned_cols=88  Identities=16%  Similarity=0.015  Sum_probs=68.9

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCccc
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLH  172 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~  172 (191)
                      ...+|+|.|.|..+..+...+  .++-++++....+..++...     . ..+..+.+|.-+. .|.  -|+||+..+||
T Consensus       179 ~~avDvGgGiG~v~k~ll~~f--p~ik~infdlp~v~~~a~~~-----~-~gV~~v~gdmfq~-~P~--~daI~mkWiLh  247 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKY--PHIKGINFDLPFVLAAAPYL-----A-PGVEHVAGDMFQD-TPK--GDAIWMKWILH  247 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhC--CCCceeecCHHHHHhhhhhh-----c-CCcceeccccccc-CCC--cCeEEEEeecc
Confidence            578999999999999998877  56888888887776665544     1 2377788885543 333  36999999999


Q ss_pred             CcCC--hHHHHHHHHhccCCC
Q 029554          173 WTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       173 ~~~d--~~~~l~~i~r~Lkpg  191 (191)
                      |+.|  ...+|+++...|+||
T Consensus       248 dwtDedcvkiLknC~~sL~~~  268 (342)
T KOG3178|consen  248 DWTDEDCVKILKNCKKSLPPG  268 (342)
T ss_pred             cCChHHHHHHHHHHHHhCCCC
Confidence            9864  678999999999986

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.08  E-value=2.8e-05  Score=64.16  Aligned_cols=102  Identities=11%  Similarity=-0.121  Sum_probs=78.1

Q ss_pred             hhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC------------------------------
Q 029554           65 WLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG------------------------------  114 (191)
Q Consensus        65 ~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~------------------------------  114 (191)
                      ..|+....++..++..++.+..+  .++..++|--||+|.+....+-.++                              
T Consensus       167 R~~~g~ApLketLAaAil~lagw--~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea  244 (381)
T COG0116         167 RVYDGPAPLKETLAAAILLLAGW--KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEA  244 (381)
T ss_pred             cccCCCCCchHHHHHHHHHHcCC--CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHH
Confidence            34566788999999888866664  3446899999999998776554331                              


Q ss_pred             --Cc-------eEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554          115 --IE-------KLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus       115 --~~-------~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                        ..       .++|+|+++.+++.|+.++.. ....+.+.|.+.|+..++.+...+|+||||-
T Consensus       245 ~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~-AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP  307 (381)
T COG0116         245 EERARRGKELPIIYGSDIDPRHIEGAKANARA-AGVGDLIEFKQADATDLKEPLEEYGVVISNP  307 (381)
T ss_pred             HHHHhhcCccceEEEecCCHHHHHHHHHHHHh-cCCCceEEEEEcchhhCCCCCCcCCEEEeCC
Confidence              01       378999999999999998865 2345679999999998864447899999984

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.08  E-value=0.00014  Score=57.93  Aligned_cols=100  Identities=13%  Similarity=-0.015  Sum_probs=75.2

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCC--ceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC---CCCCCCCcceE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGI--EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF---LPLKESSLDLA  165 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~---l~~~~~~fDlV  165 (191)
                      .+-+||||.||.|.-........|.  .++...|.|+.-++..++.+++ .+....++|.++|+-.   +.--+...+++
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~-~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE-RGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH-cCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            4558999999999877666555554  7899999999999999988765 1223335999988542   22123457999


Q ss_pred             EeCCcccCcCC---hHHHHHHHHhccCCC
Q 029554          166 ISCLGLHWTND---LPGAMIQVSIFLLPD  191 (191)
Q Consensus       166 is~~~l~~~~d---~~~~l~~i~r~Lkpg  191 (191)
                      |.+.....++|   ....+..+.+++.||
T Consensus       214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pg  242 (311)
T PF12147_consen  214 IVSGLYELFPDNDLVRRSLAGLARALEPG  242 (311)
T ss_pred             EEecchhhCCcHHHHHHHHHHHHHHhCCC
Confidence            99999999987   345788999999886

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.07  E-value=1.4e-05  Score=57.20  Aligned_cols=56  Identities=9%  Similarity=0.191  Sum_probs=44.7

Q ss_pred             eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC
Q 029554           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD  151 (191)
Q Consensus        94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d  151 (191)
                      +|||+|||.|..+..+...++..+++++|+++.+.+.+++....  +...++.++...
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~--n~~~~v~~~~~a   56 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKL--NNLPNVVLLNAA   56 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHH--cCCCcEEEEEee
Confidence            48999999999999999888777999999999999999888754  222335555543

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.06  E-value=0.00012  Score=59.67  Aligned_cols=101  Identities=11%  Similarity=-0.029  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhc----CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC----CCC--CCC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGR----GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPL--KES  160 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~----~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~----l~~--~~~  160 (191)
                      ++..|+|+|||.|.=+..|.+.    .....|+.+|+|..+++.+.++.....-....+.-+++|...    ++-  ...
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~  155 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS  155 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence            5568999999999877665443    234679999999999999988876201112334447777643    321  123


Q ss_pred             CcceEEeC-CcccCcCCh--HHHHHHHHh-ccCCC
Q 029554          161 SLDLAISC-LGLHWTNDL--PGAMIQVSI-FLLPD  191 (191)
Q Consensus       161 ~fDlVis~-~~l~~~~d~--~~~l~~i~r-~Lkpg  191 (191)
                      ...+|+.- .++..++..  ..+|+++++ +|+||
T Consensus       156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~  190 (319)
T TIGR03439       156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS  190 (319)
T ss_pred             CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC
Confidence            35666654 467777543  468999999 99885

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.05  E-value=6.1e-05  Score=55.88  Aligned_cols=74  Identities=16%  Similarity=0.112  Sum_probs=55.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-CCCCCCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLPLKESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~l~~~~~~fDlVis~  168 (191)
                      ...-+||||||+|..+..|++. +|...+.++|+++..++...+.+..   ...++..++.|+. .+.  .++.|+++-|
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~---n~~~~~~V~tdl~~~l~--~~~VDvLvfN  117 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC---NRVHIDVVRTDLLSGLR--NESVDVLVFN  117 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh---cCCccceeehhHHhhhc--cCCccEEEEC
Confidence            3567999999999999988765 5678899999999999887776653   2334677777754 343  2788888876


Q ss_pred             C
Q 029554          169 L  169 (191)
Q Consensus       169 ~  169 (191)
                      -
T Consensus       118 P  118 (209)
T KOG3191|consen  118 P  118 (209)
T ss_pred             C
Confidence            3

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.00  E-value=7.8e-05  Score=63.79  Aligned_cols=101  Identities=8%  Similarity=-0.019  Sum_probs=72.3

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-CCCCCcceEE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKESSLDLAI  166 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-~~~~~fDlVi  166 (191)
                      ..++.+|||++||+|.=+..++... ....++++|+++.-+...++++.++  ...++.+...|...++ ...+.||.|+
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~--G~~nv~v~~~D~~~~~~~~~~~fD~IL  188 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC--GVSNVALTHFDGRVFGAALPETFDAIL  188 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCCeEEEEeCchhhhhhhchhhcCeEE
Confidence            4578899999999999988887753 3358999999999999999888763  3345777777766542 2236799999


Q ss_pred             e----CC--cccCcCC----------------hHHHHHHHHhccCCC
Q 029554          167 S----CL--GLHWTND----------------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s----~~--~l~~~~d----------------~~~~l~~i~r~Lkpg  191 (191)
                      .    +.  ++..-++                ...+|.+..+.||||
T Consensus       189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpG  235 (470)
T PRK11933        189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPG  235 (470)
T ss_pred             EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4    32  2222111                145778888889886

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.99  E-value=1.4e-05  Score=60.07  Aligned_cols=104  Identities=15%  Similarity=0.103  Sum_probs=64.7

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-CCC-
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP-  156 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~l~-  156 (191)
                      +.+...+......+.+|||+=||+|.++.....+| ..+|+.||.++..+...+++.... +...++.++..|.. .++ 
T Consensus        30 ealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l-~~~~~~~v~~~d~~~~l~~  107 (183)
T PF03602_consen   30 EALFNILQPRNLEGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKL-GLEDKIRVIKGDAFKFLLK  107 (183)
T ss_dssp             HHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHH-T-GGGEEEEESSHHHHHHH
T ss_pred             HHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHh-CCCcceeeeccCHHHHHHh
Confidence            34444444311367899999999999998777776 579999999999999999988752 22335777888843 332 


Q ss_pred             --CCCCCcceEEeCCcccCcCC-hHHHHHHHH
Q 029554          157 --LKESSLDLAISCLGLHWTND-LPGAMIQVS  185 (191)
Q Consensus       157 --~~~~~fDlVis~~~l~~~~d-~~~~l~~i~  185 (191)
                        -...+||+|+..=-... .. ...++..+.
T Consensus       108 ~~~~~~~fDiIflDPPY~~-~~~~~~~l~~l~  138 (183)
T PF03602_consen  108 LAKKGEKFDIIFLDPPYAK-GLYYEELLELLA  138 (183)
T ss_dssp             HHHCTS-EEEEEE--STTS-CHHHHHHHHHHH
T ss_pred             hcccCCCceEEEECCCccc-chHHHHHHHHHH
Confidence              24578999997522111 11 255666555

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.97  E-value=7.1e-05  Score=63.28  Aligned_cols=97  Identities=22%  Similarity=0.208  Sum_probs=78.1

Q ss_pred             CCC-eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           91 TFP-TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        91 ~~~-~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      +.. ++|-+|||...+...+-+.+ ...++-+|+|+..++....+...   ......+...|...+.|++.+||+|+--.
T Consensus        47 p~~~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~---~~~~~~~~~~d~~~l~fedESFdiVIdkG  122 (482)
T KOG2352|consen   47 PSDFKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAK---ERPEMQMVEMDMDQLVFEDESFDIVIDKG  122 (482)
T ss_pred             hhhceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhcccc---CCcceEEEEecchhccCCCcceeEEEecC
Confidence            444 89999999999999887764 68899999999988887665422   34458889999999999999999999999


Q ss_pred             cccCcC-C---------hHHHHHHHHhccCCC
Q 029554          170 GLHWTN-D---------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~-d---------~~~~l~~i~r~Lkpg  191 (191)
                      .++++- |         ....+.++.++|+||
T Consensus       123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~  154 (482)
T KOG2352|consen  123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPG  154 (482)
T ss_pred             ccccccCCchhhhhhHHhhHHHhhHHHHhccC
Confidence            988762 1         224578888988875

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.94  E-value=5.1e-05  Score=68.22  Aligned_cols=98  Identities=14%  Similarity=-0.050  Sum_probs=70.8

Q ss_pred             CchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc------------C------------------------
Q 029554           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR------------G------------------------  113 (191)
Q Consensus        70 ~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~------------~------------------------  113 (191)
                      ...++..++..++..... ..++..++|-+||+|.+....+..            +                        
T Consensus       170 ~Apl~etlAaa~l~~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~  248 (702)
T PRK11783        170 EAPLKENLAAAILLRSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERA  248 (702)
T ss_pred             CCCCcHHHHHHHHHHcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence            456778888888855443 235678999999999887654321            0                        


Q ss_pred             ------CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC--CCCcceEEeCC
Q 029554          114 ------GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK--ESSLDLAISCL  169 (191)
Q Consensus       114 ------~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~--~~~fDlVis~~  169 (191)
                            ...+++|+|+++.+++.|++++... +....+.+.++|+..++.+  .++||+|++|-
T Consensus       249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~~-g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNP  311 (702)
T PRK11783        249 RAGLAELPSKFYGSDIDPRVIQAARKNARRA-GVAELITFEVKDVADLKNPLPKGPTGLVISNP  311 (702)
T ss_pred             hhcccccCceEEEEECCHHHHHHHHHHHHHc-CCCcceEEEeCChhhcccccccCCCCEEEECC
Confidence                  0136999999999999999988651 2234578899998776543  35799999983

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.89  E-value=1e-05  Score=60.53  Aligned_cols=36  Identities=22%  Similarity=0.184  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChh
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYD  126 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~  126 (191)
                      ...+|||+||++|.++..+..++ +..+|+++|+.+.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            34799999999999999998876 5789999999876

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.86  E-value=9.1e-05  Score=57.81  Aligned_cols=81  Identities=15%  Similarity=0.026  Sum_probs=58.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .+..+|+|||||.-.++..+....+...|++.|++..+++....-...   ......+...|....+ +....|+.+.--
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~---l~~~~~~~v~Dl~~~~-~~~~~DlaLllK  179 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAV---LGVPHDARVRDLLSDP-PKEPADLALLLK  179 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHH---TT-CEEEEEE-TTTSH-TTSEESEEEEET
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHh---hCCCcceeEeeeeccC-CCCCcchhhHHH
Confidence            347799999999999999888777778999999999999998776654   3445677777866554 346799998877


Q ss_pred             cccCc
Q 029554          170 GLHWT  174 (191)
Q Consensus       170 ~l~~~  174 (191)
                      +++-+
T Consensus       180 ~lp~l  184 (251)
T PF07091_consen  180 TLPCL  184 (251)
T ss_dssp             -HHHH
T ss_pred             HHHHH
Confidence            76655

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.86  E-value=9.1e-05  Score=59.83  Aligned_cols=90  Identities=13%  Similarity=0.112  Sum_probs=68.7

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-  156 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-  156 (191)
                      .+++++.+.  ..+++.++|.-+|.|..+..+.+..+..+|+|+|.++.+++.++++...   ...++.++.+++..+. 
T Consensus         9 l~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~---~~~R~~~i~~nF~~l~~   83 (305)
T TIGR00006         9 LDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD---FEGRVVLIHDNFANFFE   83 (305)
T ss_pred             HHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh---cCCcEEEEeCCHHHHHH
Confidence            445555554  4577899999999999999998876558999999999999999988753   2346888888876532 


Q ss_pred             ----CCCCCcceEEeCCccc
Q 029554          157 ----LKESSLDLAISCLGLH  172 (191)
Q Consensus       157 ----~~~~~fDlVis~~~l~  172 (191)
                          ....++|.|+..+++.
T Consensus        84 ~l~~~~~~~vDgIl~DLGvS  103 (305)
T TIGR00006        84 HLDELLVTKIDGILVDLGVS  103 (305)
T ss_pred             HHHhcCCCcccEEEEeccCC
Confidence                2335799999987654

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.84  E-value=2.8e-05  Score=59.32  Aligned_cols=79  Identities=18%  Similarity=0.133  Sum_probs=58.2

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC---CCCCcceEEeCC
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL---KESSLDLAISCL  169 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~---~~~~fDlVis~~  169 (191)
                      -++|||||=...+...-..   .-.|+.+|+++.-                 -.+.+.|+...|.   +++.||+|++++
T Consensus        53 lrlLEVGals~~N~~s~~~---~fdvt~IDLns~~-----------------~~I~qqDFm~rplp~~~~e~FdvIs~SL  112 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSG---WFDVTRIDLNSQH-----------------PGILQQDFMERPLPKNESEKFDVISLSL  112 (219)
T ss_pred             ceEEeecccCCCCcccccC---ceeeEEeecCCCC-----------------CCceeeccccCCCCCCcccceeEEEEEE
Confidence            5899999975554433222   3469999997621                 3446677776654   357899999999


Q ss_pred             cccCcCChH---HHHHHHHhccCCC
Q 029554          170 GLHWTNDLP---GAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~---~~l~~i~r~Lkpg  191 (191)
                      +|.+++++.   ..+.++.+.|+|+
T Consensus       113 VLNfVP~p~~RG~Ml~r~~~fL~~~  137 (219)
T PF11968_consen  113 VLNFVPDPKQRGEMLRRAHKFLKPP  137 (219)
T ss_pred             EEeeCCCHHHHHHHHHHHHHHhCCC
Confidence            999999875   5789999999874

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.81  E-value=6.6e-05  Score=60.91  Aligned_cols=81  Identities=12%  Similarity=-0.058  Sum_probs=50.3

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhc-------CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-CC-C
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGR-------GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LK-E  159 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~-------~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-~~-~  159 (191)
                      ..++.+|||-+||+|.+...+...       ....+++|+|+++.++..++-+..-.+.......+..+|....+ .. .
T Consensus        44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~  123 (311)
T PF02384_consen   44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN  123 (311)
T ss_dssp             T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred             ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence            445668999999999998776652       24578999999999998887654321111222346777754333 22 4


Q ss_pred             CCcceEEeCC
Q 029554          160 SSLDLAISCL  169 (191)
Q Consensus       160 ~~fDlVis~~  169 (191)
                      ..||+|++|-
T Consensus       124 ~~~D~ii~NP  133 (311)
T PF02384_consen  124 QKFDVIIGNP  133 (311)
T ss_dssp             --EEEEEEE-
T ss_pred             cccccccCCC
Confidence            7899999973

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=97.72  E-value=5e-05  Score=60.87  Aligned_cols=100  Identities=19%  Similarity=0.142  Sum_probs=66.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC--CCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP--LKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~--~~~~~fDlVis  167 (191)
                      .+.+|||+=|=||.++...+..+ ..+|+.||.|..+++.+++++...+-...++.+++.|+.. +.  -..+.||+||+
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            46799999999999998776644 4689999999999999999887522223578899988542 32  12468999997


Q ss_pred             C---Cc---ccCcCChHHHHHHHHhccCCC
Q 029554          168 C---LG---LHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~---~~---l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .   ++   ..-..+....+..+.++|+||
T Consensus       202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~g  231 (286)
T PF10672_consen  202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPG  231 (286)
T ss_dssp             --SSEESSTCEHHHHHHHHHHHHHHTEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            3   11   111124556677777777764

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.72  E-value=0.00059  Score=52.45  Aligned_cols=76  Identities=12%  Similarity=0.010  Sum_probs=56.4

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCC-cceEEeCCc
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESS-LDLAISCLG  170 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-fDlVis~~~  170 (191)
                      +.+++|||+|.|.=+..|+=.+|..+|+.+|....-+.-.++-..+  -.-.+++++.+.+|..... .. ||+|+|..+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~e--L~L~nv~i~~~RaE~~~~~-~~~~D~vtsRAv  144 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKE--LGLENVEIVHGRAEEFGQE-KKQYDVVTSRAV  144 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHH--hCCCCeEEehhhHhhcccc-cccCcEEEeehc
Confidence            5799999999998888877556778899999998765555544433  1334589999998877532 23 999998643

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.68  E-value=0.00018  Score=62.57  Aligned_cols=75  Identities=11%  Similarity=-0.036  Sum_probs=50.8

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCC--------CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-----CCC
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGG--------IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-----PLK  158 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~--------~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-----~~~  158 (191)
                      ..+|||.|||+|.+...+....+        ..+++|+|+++..+..++.......  .....+...|....     .-.
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~--~~~~~i~~~d~l~~~~~~~~~~  109 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA--LLEINVINFNSLSYVLLNIESY  109 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC--CCCceeeecccccccccccccc
Confidence            45899999999999887765431        2579999999999999988765421  11233444442211     111


Q ss_pred             CCCcceEEeC
Q 029554          159 ESSLDLAISC  168 (191)
Q Consensus       159 ~~~fDlVis~  168 (191)
                      .+.||+||+|
T Consensus       110 ~~~fD~IIgN  119 (524)
T TIGR02987       110 LDLFDIVITN  119 (524)
T ss_pred             cCcccEEEeC
Confidence            2579999998

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.68  E-value=0.00037  Score=53.01  Aligned_cols=77  Identities=16%  Similarity=0.105  Sum_probs=54.9

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--  156 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--  156 (191)
                      +|.+.. .+..++.+|+||||.+|.+++.+++.. +...|+++|+.|-             ....++.++++|+..-+  
T Consensus        35 el~~k~-~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-------------~~~~~V~~iq~d~~~~~~~  100 (205)
T COG0293          35 ELNEKF-KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-------------KPIPGVIFLQGDITDEDTL  100 (205)
T ss_pred             HHHHhc-CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-------------ccCCCceEEeeeccCccHH
Confidence            444444 345578899999999999999888764 3345999999773             23344888999876432  


Q ss_pred             ------CCCCCcceEEeCCc
Q 029554          157 ------LKESSLDLAISCLG  170 (191)
Q Consensus       157 ------~~~~~fDlVis~~~  170 (191)
                            +....+|+|+|-++
T Consensus       101 ~~l~~~l~~~~~DvV~sD~a  120 (205)
T COG0293         101 EKLLEALGGAPVDVVLSDMA  120 (205)
T ss_pred             HHHHHHcCCCCcceEEecCC
Confidence                  44456899998554

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.67  E-value=0.0001  Score=62.59  Aligned_cols=60  Identities=20%  Similarity=0.158  Sum_probs=52.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~  153 (191)
                      ..+..+||+.||||.++..+++..  .+|+|++++++.++-|+.++..  +...+..|+++..|
T Consensus       382 ~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~--NgisNa~Fi~gqaE  441 (534)
T KOG2187|consen  382 PADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQI--NGISNATFIVGQAE  441 (534)
T ss_pred             CCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchh--cCccceeeeecchh
Confidence            355789999999999999999876  9999999999999999988765  77889999999544

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.65  E-value=0.00015  Score=55.53  Aligned_cols=73  Identities=18%  Similarity=0.095  Sum_probs=53.8

Q ss_pred             EEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC-CCCCCCCCCCcceEEeCC
Q 029554           95 ALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD-EEFLPLKESSLDLAISCL  169 (191)
Q Consensus        95 VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d-~~~l~~~~~~fDlVis~~  169 (191)
                      |.|+||-=|++...|.+.+...+++++|++++-++.|++.... .+...++.+..+| ++.++. ....|.|+...
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~-~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAG   74 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK-YGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAG   74 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TT-TTTEEEEE-SGGGG--G-GG---EEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCcccEEEEECCcccccCC-CCCCCEEEEec
Confidence            6899999999999999998888999999999999999998875 2335678899998 666642 22378887643

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.65  E-value=0.00036  Score=57.19  Aligned_cols=79  Identities=16%  Similarity=0.087  Sum_probs=65.2

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCC-ceeeEecCCCCCCCCCCCcceEEe
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKESSLDLAIS  167 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-~~~~~~~d~~~l~~~~~~fDlVis  167 (191)
                      ...+.+|||+=||-|+++..++..+... |+++|++|..++.+++++..  |... .+..+++|.......-+.+|-|++
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~L--N~v~~~v~~i~gD~rev~~~~~~aDrIim  262 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRL--NKVEGRVEPILGDAREVAPELGVADRIIM  262 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHh--cCccceeeEEeccHHHhhhccccCCEEEe
Confidence            3468899999999999999999887333 99999999999999998875  4444 388999998877655588999998


Q ss_pred             CCc
Q 029554          168 CLG  170 (191)
Q Consensus       168 ~~~  170 (191)
                      ++-
T Consensus       263 ~~p  265 (341)
T COG2520         263 GLP  265 (341)
T ss_pred             CCC
Confidence            764

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.64  E-value=0.00022  Score=59.45  Aligned_cols=93  Identities=5%  Similarity=-0.115  Sum_probs=68.6

Q ss_pred             CCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-CCCCCCcceEEeCC
Q 029554           92 FPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-PLKESSLDLAISCL  169 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~~~~~~fDlVis~~  169 (191)
                      ..+|||+.||+|..+..++... ...+|+++|+++..++.++++.+.  +...++.+.+.|...+ ......||+|...-
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~--N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP  122 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY--NSVENIEVPNEDAANVLRYRNRKFHVIDIDP  122 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH--hCCCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence            3579999999999999888763 357899999999999999998865  3444577888886643 22235799998743


Q ss_pred             cccCcCChHHHHHHHHhccCC
Q 029554          170 GLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                       .   ..+..++..+.+.+++
T Consensus       123 -f---Gs~~~fld~al~~~~~  139 (374)
T TIGR00308       123 -F---GTPAPFVDSAIQASAE  139 (374)
T ss_pred             -C---CCcHHHHHHHHHhccc
Confidence             2   3445677777766654

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.60  E-value=0.00086  Score=53.05  Aligned_cols=113  Identities=20%  Similarity=0.219  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE  152 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~  152 (191)
                      ....+.+..+.. ..--...||||||--   ..-+......|.++|+-+|..+-.+..++..+..  +....+.++.+|+
T Consensus        54 ~Fl~RaVr~la~-~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~--~~~g~t~~v~aD~  130 (267)
T PF04672_consen   54 AFLRRAVRYLAE-EAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD--NPRGRTAYVQADL  130 (267)
T ss_dssp             HHHHHHHHHHHC-TT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT---TTSEEEEEE--T
T ss_pred             HHHHHHHHHHHH-hcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC--CCCccEEEEeCCC
Confidence            334444444442 113347999999943   4444444446789999999999999988887643  2222378888887


Q ss_pred             CCCC--C----CCCCcc-----eEEeCCcccCcC---ChHHHHHHHHhccCCC
Q 029554          153 EFLP--L----KESSLD-----LAISCLGLHWTN---DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       153 ~~l~--~----~~~~fD-----lVis~~~l~~~~---d~~~~l~~i~r~Lkpg  191 (191)
                      ....  +    -.+-+|     .|+...+|||++   ++..+++.+.+.|.||
T Consensus       131 r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapG  183 (267)
T PF04672_consen  131 RDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPG  183 (267)
T ss_dssp             T-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT
T ss_pred             CCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCC
Confidence            6421  0    001222     567788999995   5788999999999887

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.58  E-value=0.00035  Score=55.70  Aligned_cols=100  Identities=8%  Similarity=0.071  Sum_probs=60.1

Q ss_pred             CCeEEEEcCCccHHHHHHhh--cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           92 FPTALCLGGSLEAVRRLLRG--RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~--~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      +.+|+=||||+=.++..+..  .++...++++|+++..++.+++-.........++.|+.+|....+..-..||+|+...
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa  200 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA  200 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence            35999999998877765543  2445789999999999999987655211235568999999776554446899998765


Q ss_pred             cccC-cCChHHHHHHHHhccCCC
Q 029554          170 GLHW-TNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~-~~d~~~~l~~i~r~Lkpg  191 (191)
                      -... -.+...++.++.+.++||
T Consensus       201 lVg~~~e~K~~Il~~l~~~m~~g  223 (276)
T PF03059_consen  201 LVGMDAEPKEEILEHLAKHMAPG  223 (276)
T ss_dssp             T-S----SHHHHHHHHHHHS-TT
T ss_pred             hcccccchHHHHHHHHHhhCCCC
Confidence            4432 237889999999999987

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.56  E-value=0.00014  Score=57.43  Aligned_cols=99  Identities=20%  Similarity=0.119  Sum_probs=58.4

Q ss_pred             CCCeEEEEcCCccHHHH-HHhhcCCCceEEEEECChhHHHHHHHhhhh-----c-----------cCC-----------C
Q 029554           91 TFPTALCLGGSLEAVRR-LLRGRGGIEKLIMMDTSYDMLKLCKDAQQD-----A-----------HND-----------N  142 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~-~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~-----~-----------~~~-----------~  142 (191)
                      .+.++||||||+-..-. ...+.+  .+++..|.++.-++..++-.+.     |           +..           .
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f--~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWF--EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTE--EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhh--cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            45589999999854422 222334  7899999999876654432211     0           000           0


Q ss_pred             CceeeEecCCCCC-CCCC-----CCcceEEeCCcccCc-CCh---HHHHHHHHhccCCC
Q 029554          143 IETCFVVGDEEFL-PLKE-----SSLDLAISCLGLHWT-NDL---PGAMIQVSIFLLPD  191 (191)
Q Consensus       143 ~~~~~~~~d~~~l-~~~~-----~~fDlVis~~~l~~~-~d~---~~~l~~i~r~Lkpg  191 (191)
                      .-..++..|+... |+.+     ..||+|++.++|... .|+   ..+++++.++||||
T Consensus       134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpG  192 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPG  192 (256)
T ss_dssp             HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEE
T ss_pred             hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence            0123555676543 3332     359999999999865 454   46799999999997

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.55  E-value=0.00096  Score=51.01  Aligned_cols=98  Identities=16%  Similarity=0.127  Sum_probs=72.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-C-CCCCCCcceEEe
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-L-PLKESSLDLAIS  167 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l-~~~~~~fDlVis  167 (191)
                      ..+++||+||-|.|.....+.+.-| .+=+.++..++.++..+...-   ....++.+..+--+. + .++++.||-|.-
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw---~ek~nViil~g~WeDvl~~L~d~~FDGI~y  175 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGW---REKENVIILEGRWEDVLNTLPDKHFDGIYY  175 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhccc---ccccceEEEecchHhhhccccccCcceeEe
Confidence            4788999999999999988887654 455678999999988876542   234456666665332 2 256788999987


Q ss_pred             CCcccCcCChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ----.+-+|...+.+.+.++|||+
T Consensus       176 DTy~e~yEdl~~~hqh~~rLLkP~  199 (271)
T KOG1709|consen  176 DTYSELYEDLRHFHQHVVRLLKPE  199 (271)
T ss_pred             echhhHHHHHHHHHHHHhhhcCCC
Confidence            544455568888899999999996

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.48  E-value=0.0017  Score=50.34  Aligned_cols=101  Identities=18%  Similarity=0.199  Sum_probs=66.9

Q ss_pred             HHHHHHHh--cccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-
Q 029554           80 NLLDRLED--CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-  156 (191)
Q Consensus        80 ~l~~~l~~--~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-  156 (191)
                      .|...+..  +...+..+||+|+.||.++..+.+++ ..+|+++|...+.+..--+.      ...-+.....++..+. 
T Consensus        66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~  138 (245)
T COG1189          66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTP  138 (245)
T ss_pred             HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCH
Confidence            44444443  34567899999999999999999885 57999999998876554222      1111333334444332 


Q ss_pred             --CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          157 --LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 --~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                        +. +..|+|+|-.++-   .+..+|..+..+++|+
T Consensus       139 ~~~~-~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~  171 (245)
T COG1189         139 EDFT-EKPDLIVIDVSFI---SLKLILPALLLLLKDG  171 (245)
T ss_pred             HHcc-cCCCeEEEEeehh---hHHHHHHHHHHhcCCC
Confidence              22 3678999876654   5677777787777764

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.45  E-value=0.00029  Score=52.67  Aligned_cols=91  Identities=16%  Similarity=0.140  Sum_probs=66.7

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCccc
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLH  172 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~  172 (191)
                      +.+.|+|+|+|.++...+...  .+|++++.+|.-...+.++..-  +...+..++.+|.....|  ...|+|+|-+-=.
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A--~rViAiE~dPk~a~~a~eN~~v--~g~~n~evv~gDA~~y~f--e~ADvvicEmlDT  107 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAA--ERVIAIEKDPKRARLAEENLHV--PGDVNWEVVVGDARDYDF--ENADVVICEMLDT  107 (252)
T ss_pred             hceeeccCCcchHHHHHHhhh--ceEEEEecCcHHHHHhhhcCCC--CCCcceEEEecccccccc--cccceeHHHHhhH
Confidence            568999999999998877765  8999999999999888887643  456689999999998887  4579999854211


Q ss_pred             --CcCChHHHHHHHHhccC
Q 029554          173 --WTNDLPGAMIQVSIFLL  189 (191)
Q Consensus       173 --~~~d~~~~l~~i~r~Lk  189 (191)
                        -.+....++..+.+.||
T Consensus       108 aLi~E~qVpV~n~vleFLr  126 (252)
T COG4076         108 ALIEEKQVPVINAVLEFLR  126 (252)
T ss_pred             HhhcccccHHHHHHHHHhh
Confidence              11223345555554444

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.42  E-value=0.0023  Score=53.07  Aligned_cols=112  Identities=16%  Similarity=0.020  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC--CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG--IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      .+..+...+.. ..++.+|||+++++|.=+.++++...  ...|+++|+++.-+...+++..+.  ...++.....|...
T Consensus       143 ~sS~l~a~~L~-p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl--G~~nv~~~~~d~~~  219 (355)
T COG0144         143 EASQLPALVLD-PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL--GVRNVIVVNKDARR  219 (355)
T ss_pred             HHHHHHHHHcC-CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc--CCCceEEEeccccc
Confidence            34455544443 67889999999999988888877643  255799999999998888888762  33446667777553


Q ss_pred             CC---CCCCCcceEEeC------CcccCcCC----------------hHHHHHHHHhccCCC
Q 029554          155 LP---LKESSLDLAISC------LGLHWTND----------------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 l~---~~~~~fDlVis~------~~l~~~~d----------------~~~~l~~i~r~Lkpg  191 (191)
                      .+   ...++||.|+.-      .+++--+|                ...+|....++||||
T Consensus       220 ~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~G  281 (355)
T COG0144         220 LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPG  281 (355)
T ss_pred             ccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            32   222369999852      23321111                235677777888876

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.40  E-value=0.00058  Score=54.99  Aligned_cols=82  Identities=10%  Similarity=0.020  Sum_probs=46.4

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-----CCCCCCCCcceEEe
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-----FLPLKESSLDLAIS  167 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-----~l~~~~~~fDlVis  167 (191)
                      -++||||+|..-+-..|..+....+++|+|+++..++.|++......+...++.+....-.     .+..++..||+++|
T Consensus       104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmC  183 (299)
T PF05971_consen  104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMC  183 (299)
T ss_dssp             -EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE
T ss_pred             eEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEec
Confidence            4799999999866555543322489999999999999999988762234455666544211     12233468999999


Q ss_pred             CCcccCc
Q 029554          168 CLGLHWT  174 (191)
Q Consensus       168 ~~~l~~~  174 (191)
                      |=-++--
T Consensus       184 NPPFy~s  190 (299)
T PF05971_consen  184 NPPFYSS  190 (299)
T ss_dssp             -----SS
T ss_pred             CCccccC
Confidence            8766643

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.38  E-value=0.0014  Score=49.10  Aligned_cols=90  Identities=17%  Similarity=0.096  Sum_probs=63.7

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPL  157 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~  157 (191)
                      +.+...+......+.++||+=+|+|.++.....++ ..+++.+|.+...+...+++.... +...+..++..|... ++.
T Consensus        31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l-~~~~~~~~~~~da~~~L~~  108 (187)
T COG0742          31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKAL-GLEGEARVLRNDALRALKQ  108 (187)
T ss_pred             HHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHh-CCccceEEEeecHHHHHHh
Confidence            34444444201367899999999999998888876 578999999999999999887652 223567777777552 222


Q ss_pred             CCC--CcceEEeCCc
Q 029554          158 KES--SLDLAISCLG  170 (191)
Q Consensus       158 ~~~--~fDlVis~~~  170 (191)
                      ...  +||+|+.-=-
T Consensus       109 ~~~~~~FDlVflDPP  123 (187)
T COG0742         109 LGTREPFDLVFLDPP  123 (187)
T ss_pred             cCCCCcccEEEeCCC
Confidence            223  4999997533

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.37  E-value=0.0036  Score=49.53  Aligned_cols=95  Identities=11%  Similarity=-0.038  Sum_probs=69.8

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC--CCCCcceE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL--KESSLDLA  165 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~--~~~~fDlV  165 (191)
                      ..|+.+|||-|.|.|.++-.+++. +|..+++.+|+-+.-.+.+.+.+++ ..-..++.+..-|+....|  ++..+|.|
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~-hgi~~~vt~~hrDVc~~GF~~ks~~aDaV  181 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFRE-HGIGDNVTVTHRDVCGSGFLIKSLKADAV  181 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHH-hCCCcceEEEEeecccCCccccccccceE
Confidence            568999999999999998888764 5778999999988877777777654 2245678888888876543  35779999


Q ss_pred             EeCCcccCcCChHHHHHHHHhccC
Q 029554          166 ISCLGLHWTNDLPGAMIQVSIFLL  189 (191)
Q Consensus       166 is~~~l~~~~d~~~~l~~i~r~Lk  189 (191)
                      +.-.     +.|..++..+..+||
T Consensus       182 FLDl-----PaPw~AiPha~~~lk  200 (314)
T KOG2915|consen  182 FLDL-----PAPWEAIPHAAKILK  200 (314)
T ss_pred             EEcC-----CChhhhhhhhHHHhh
Confidence            8643     344445555555554

>PRK10742 putative methyltransferase; Provisional

Probab=97.28  E-value=0.002  Score=50.55  Aligned_cols=79  Identities=10%  Similarity=0.004  Sum_probs=57.7

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc-----CC--CCceeeEecCCC-CCCCCCCCcce
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH-----ND--NIETCFVVGDEE-FLPLKESSLDL  164 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-----~~--~~~~~~~~~d~~-~l~~~~~~fDl  164 (191)
                      .+|||+-+|.|..+..++.++  ++|+++|-++.+....++......     ..  ..+++++.+|.. .+.-...+||+
T Consensus        90 p~VLD~TAGlG~Da~~las~G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDV  167 (250)
T PRK10742         90 PDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV  167 (250)
T ss_pred             CEEEECCCCccHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcE
Confidence            389999999999999999988  779999999998888877665410     11  135777778744 33322347999


Q ss_pred             EEeCCcccC
Q 029554          165 AISCLGLHW  173 (191)
Q Consensus       165 Vis~~~l~~  173 (191)
                      |+.-=...|
T Consensus       168 VYlDPMfp~  176 (250)
T PRK10742        168 VYLDPMFPH  176 (250)
T ss_pred             EEECCCCCC
Confidence            997544444

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.15  E-value=0.0042  Score=47.66  Aligned_cols=77  Identities=12%  Similarity=0.034  Sum_probs=60.5

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC-CCCCCCCCCcceEEeCC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFLPLKESSLDLAISCL  169 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~~fDlVis~~  169 (191)
                      .+.++.|+||-=+++...|.+.++...+++.|++++-++.|.+.+.. .+....++...+|- ..+. ++..+|.|+...
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~-~~l~~~i~vr~~dgl~~l~-~~d~~d~ivIAG   93 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKK-NNLSERIDVRLGDGLAVLE-LEDEIDVIVIAG   93 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHh-cCCcceEEEeccCCccccC-ccCCcCEEEEeC
Confidence            45569999999999999999999899999999999999999888765 23455677777774 3343 334789887654

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.11  E-value=0.0061  Score=47.03  Aligned_cols=97  Identities=10%  Similarity=0.008  Sum_probs=68.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-CCC-----CCCCCcc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP-----LKESSLD  163 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~l~-----~~~~~fD  163 (191)
                      .+.++||||.=||+.+..++...| ..+|+++|+++...+.+....+. .....++.++++... .++     .+.++||
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~-agv~~KI~~i~g~a~esLd~l~~~~~~~tfD  151 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKL-AGVDHKITFIEGPALESLDELLADGESGTFD  151 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHh-ccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence            567899999988888777765543 47999999999999888655443 234567889988743 322     3568999


Q ss_pred             eEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          164 LAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       164 lVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++.-   +|=.+......++.++||+|
T Consensus       152 faFvD---adK~nY~~y~e~~l~Llr~G  176 (237)
T KOG1663|consen  152 FAFVD---ADKDNYSNYYERLLRLLRVG  176 (237)
T ss_pred             EEEEc---cchHHHHHHHHHHHhhcccc
Confidence            99853   22223346777888888876

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.05  E-value=0.0018  Score=49.64  Aligned_cols=88  Identities=14%  Similarity=0.078  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC---
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF---  154 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~---  154 (191)
                      +..+..+..... ....|+|.-||.|..+...+..+  ..|+++|+++.-+..|+++++- .+-..++.|+++|+..   
T Consensus        82 a~~iA~~v~~~~-~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaei-YGI~~rItFI~GD~ld~~~  157 (263)
T KOG2730|consen   82 AEHIANRVVACM-NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEV-YGVPDRITFICGDFLDLAS  157 (263)
T ss_pred             HHHHHHHHHHhc-CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhcccee-ecCCceeEEEechHHHHHH
Confidence            444444444322 44579999999999988888877  8999999999999999887753 2234589999999653   


Q ss_pred             -CCCCCCCcceEEeCC
Q 029554          155 -LPLKESSLDLAISCL  169 (191)
Q Consensus       155 -l~~~~~~fDlVis~~  169 (191)
                       +.+....+|+|..+-
T Consensus       158 ~lq~~K~~~~~vf~sp  173 (263)
T KOG2730|consen  158 KLKADKIKYDCVFLSP  173 (263)
T ss_pred             HHhhhhheeeeeecCC
Confidence             334444566776543

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=97.03  E-value=0.004  Score=50.17  Aligned_cols=136  Identities=21%  Similarity=0.155  Sum_probs=79.4

Q ss_pred             HHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHh--cccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHH
Q 029554           54 HLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLED--CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLC  131 (191)
Q Consensus        54 ~~~~~~~~~~a~~y~~~~~~~~~~~~~l~~~l~~--~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a  131 (191)
                      .++...+++.++...+.+.++..+.++|....+.  ..+...+||-=|||.|.++..|+..|  -.+-|-+.|--|+-..
T Consensus       111 ~l~~i~RdwssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G--~~~qGNEfSy~Mli~S  188 (369)
T KOG2798|consen  111 TLKQICRDWSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLG--FKCQGNEFSYFMLICS  188 (369)
T ss_pred             HHHHHHHHhhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhc--ccccccHHHHHHHHHH
Confidence            3455555665543334444444444444444433  12235579999999999999999887  4556667777765322


Q ss_pred             -------HHhhhh-----------ccC--------------------CCCceeeEecCCCC-CC--CCCCCcceEEeCCc
Q 029554          132 -------KDAQQD-----------AHN--------------------DNIETCFVVGDEEF-LP--LKESSLDLAISCLG  170 (191)
Q Consensus       132 -------~~~~~~-----------~~~--------------------~~~~~~~~~~d~~~-l~--~~~~~fDlVis~~~  170 (191)
                             +.....           +..                    .........+|+.. .+  -..+.||+|+.++-
T Consensus       189 ~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfF  268 (369)
T KOG2798|consen  189 SFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFF  268 (369)
T ss_pred             HHHHHhhccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEE
Confidence                   111000           000                    00111223344322 11  12247999999987


Q ss_pred             ccCcCChHHHHHHHHhccCCC
Q 029554          171 LHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +....+.-..+..|..+||||
T Consensus       269 IDTa~NileYi~tI~~iLk~G  289 (369)
T KOG2798|consen  269 IDTAHNILEYIDTIYKILKPG  289 (369)
T ss_pred             eechHHHHHHHHHHHHhccCC
Confidence            777778889999999999997

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.00029  Score=51.41  Aligned_cols=98  Identities=11%  Similarity=0.120  Sum_probs=65.2

Q ss_pred             CCCeEEEEcCCcc-HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCC---CCceeeEecCCC--CCCCCCCCcce
Q 029554           91 TFPTALCLGGSLE-AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND---NIETCFVVGDEE--FLPLKESSLDL  164 (191)
Q Consensus        91 ~~~~VLDlGcG~G-~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~---~~~~~~~~~d~~--~l~~~~~~fDl  164 (191)
                      .+.+|||+|.|-- ..+..++...|...|..+|-++..+...++....  +.   ..++....-+..  +.......||.
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~--n~~s~~tsc~vlrw~~~~aqsq~eq~tFDi  106 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNS--NMASSLTSCCVLRWLIWGAQSQQEQHTFDI  106 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhc--ccccccceehhhHHHHhhhHHHHhhCcccE
Confidence            3457999999954 4455556566788999999999999888776533  21   122222222221  11123458999


Q ss_pred             EEeCCcccCcCChHHHHHHHHhccCC
Q 029554          165 AISCLGLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       165 Vis~~~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                      |++..++-.-+-....++-|...|+|
T Consensus       107 IlaADClFfdE~h~sLvdtIk~lL~p  132 (201)
T KOG3201|consen  107 ILAADCLFFDEHHESLVDTIKSLLRP  132 (201)
T ss_pred             EEeccchhHHHHHHHHHHHHHHHhCc
Confidence            99998876555556778888888887

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.97  E-value=0.0021  Score=52.02  Aligned_cols=89  Identities=17%  Similarity=0.092  Sum_probs=60.9

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-  156 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-  156 (191)
                      ..++++.|.  ..+++.++|.--|.|..+..+.+..+..+++|+|-++.+++.++++...   ...++.++..++..+. 
T Consensus         9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~---~~~r~~~~~~~F~~l~~   83 (310)
T PF01795_consen    9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK---FDDRFIFIHGNFSNLDE   83 (310)
T ss_dssp             HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC---CCTTEEEEES-GGGHHH
T ss_pred             HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh---ccceEEEEeccHHHHHH
Confidence            345555555  5578899999999999999999887779999999999999999887753   3556888888876543 


Q ss_pred             ----C-CCCCcceEEeCCcc
Q 029554          157 ----L-KESSLDLAISCLGL  171 (191)
Q Consensus       157 ----~-~~~~fDlVis~~~l  171 (191)
                          . ..+.+|.|+.-+++
T Consensus        84 ~l~~~~~~~~~dgiL~DLGv  103 (310)
T PF01795_consen   84 YLKELNGINKVDGILFDLGV  103 (310)
T ss_dssp             HHHHTTTTS-EEEEEEE-S-
T ss_pred             HHHHccCCCccCEEEEcccc
Confidence                2 34579999876554

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.86  E-value=0.0064  Score=46.82  Aligned_cols=119  Identities=16%  Similarity=0.129  Sum_probs=69.0

Q ss_pred             hcCCCchHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCC
Q 029554           66 LTRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI  143 (191)
Q Consensus        66 ~y~~~~~~~~~~~~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~  143 (191)
                      .|+.++..+..++..++.-+..+ ..++.+||.+|+++|....++++. ++...|++|+.|+......-.-.+.    -.
T Consensus        47 eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~----R~  122 (229)
T PF01269_consen   47 EYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK----RP  122 (229)
T ss_dssp             EEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH----ST
T ss_pred             ceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc----CC
Confidence            56666677777776676655532 357789999999999999998875 3457899999999643333222211    22


Q ss_pred             ceeeEecCCCCC----CCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          144 ETCFVVGDEEFL----PLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       144 ~~~~~~~d~~~l----~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |+.-+..|...-    .+- +.+|+|++.-+  +-+....++.+....||+|
T Consensus       123 NIiPIl~DAr~P~~Y~~lv-~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~g  171 (229)
T PF01269_consen  123 NIIPILEDARHPEKYRMLV-EMVDVIFQDVA--QPDQARIAALNARHFLKPG  171 (229)
T ss_dssp             TEEEEES-TTSGGGGTTTS---EEEEEEE-S--STTHHHHHHHHHHHHEEEE
T ss_pred             ceeeeeccCCChHHhhccc-ccccEEEecCC--ChHHHHHHHHHHHhhccCC
Confidence            366566776521    222 47999987644  2222334566666677664

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.82  E-value=0.0044  Score=48.20  Aligned_cols=79  Identities=20%  Similarity=0.168  Sum_probs=46.9

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc-CC------CCceeeEecCCC-CCCCCCCCcce
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH-ND------NIETCFVVGDEE-FLPLKESSLDL  164 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-~~------~~~~~~~~~d~~-~l~~~~~~fDl  164 (191)
                      .+|||.-+|.|..+..++..|  ++|+++|-|+-+....+.-+..+. ..      ..+++++.+|.. .+..++.+||+
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV  154 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV  154 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred             CEEEECCCcchHHHHHHHccC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence            489999999999999998777  799999999987666554332210 11      136888888854 46666789999


Q ss_pred             EEeCCcccC
Q 029554          165 AISCLGLHW  173 (191)
Q Consensus       165 Vis~~~l~~  173 (191)
                      |+.-=.+.+
T Consensus       155 VY~DPMFp~  163 (234)
T PF04445_consen  155 VYFDPMFPE  163 (234)
T ss_dssp             EEE--S---
T ss_pred             EEECCCCCC
Confidence            998655544

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=96.81  E-value=0.0044  Score=46.72  Aligned_cols=77  Identities=13%  Similarity=0.024  Sum_probs=54.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      .+.+|||+|+|.|..+..-+..+ ...|+..|+.+-......-+...   ....+.+...|...   ++..||+|+..-.
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~a---ngv~i~~~~~d~~g---~~~~~Dl~LagDl  151 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAA---NGVSILFTHADLIG---SPPAFDLLLAGDL  151 (218)
T ss_pred             ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhh---ccceeEEeeccccC---CCcceeEEEeece
Confidence            56799999999998887776655 46899999997766655544432   23446666666544   4567999999877


Q ss_pred             ccCc
Q 029554          171 LHWT  174 (191)
Q Consensus       171 l~~~  174 (191)
                      +..-
T Consensus       152 fy~~  155 (218)
T COG3897         152 FYNH  155 (218)
T ss_pred             ecCc
Confidence            6543

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=96.78  E-value=0.0083  Score=47.29  Aligned_cols=45  Identities=9%  Similarity=-0.051  Sum_probs=33.9

Q ss_pred             CCeEEEEcCCccHHHHHHhhcC--------CCceEEEEECChhHHHHHHHhhh
Q 029554           92 FPTALCLGGSLEAVRRLLRGRG--------GIEKLIMMDTSYDMLKLCKDAQQ  136 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~--------~~~~v~~vD~s~~~l~~a~~~~~  136 (191)
                      ..+|+|+|+|+|.++..+.+..        ...+|+.+|+|+.+.+.-++++.
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~   71 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS   71 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence            3589999999999988876532        23689999999999888777764

; PDB: 4F3N_A 1ZKD_B.

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=96.61  E-value=0.0032  Score=47.73  Aligned_cols=44  Identities=11%  Similarity=0.003  Sum_probs=39.7

Q ss_pred             eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh
Q 029554           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD  137 (191)
Q Consensus        94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~  137 (191)
                      .+.|||||.|.++..|+..+|..-++|++|--..-+..++++..
T Consensus        63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~A  106 (249)
T KOG3115|consen   63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQA  106 (249)
T ss_pred             eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHH
Confidence            58999999999999999999999999999998888888877654

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.55  E-value=0.019  Score=47.43  Aligned_cols=101  Identities=20%  Similarity=0.131  Sum_probs=65.9

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhh--hhccC---CCCceeeEecCCCC-CCCCCCCcce
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ--QDAHN---DNIETCFVVGDEEF-LPLKESSLDL  164 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~--~~~~~---~~~~~~~~~~d~~~-l~~~~~~fDl  164 (191)
                      ...+||-+|.|.|...+.+.+.-...+++-+|.+|.|++.+++..  ...+.   ...++.++..|.-+ +.-....||.
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~  368 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV  368 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence            345799999999999999987433789999999999999998432  22111   23467777777543 3333458999


Q ss_pred             EEeCCcccCcCC-----hHHHHHHHHhccCCC
Q 029554          165 AISCLGLHWTND-----LPGAMIQVSIFLLPD  191 (191)
Q Consensus       165 Vis~~~l~~~~d-----~~~~l~~i~r~Lkpg  191 (191)
                      ||..+-=...+.     ...+..-+.+.|+++
T Consensus       369 vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~  400 (508)
T COG4262         369 VIVDLPDPSTPSIGRLYSVEFYRLLSRHLAET  400 (508)
T ss_pred             EEEeCCCCCCcchhhhhhHHHHHHHHHhcCcC
Confidence            997543221111     124555666666653

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=96.52  E-value=0.011  Score=49.32  Aligned_cols=88  Identities=19%  Similarity=0.143  Sum_probs=49.1

Q ss_pred             CCeEEEEcCCccHHHHHHhh--------c-------CCCceEEEEECChhHHHHHHHhhhhccC-----------CCCce
Q 029554           92 FPTALCLGGSLEAVRRLLRG--------R-------GGIEKLIMMDTSYDMLKLCKDAQQDAHN-----------DNIET  145 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~--------~-------~~~~~v~~vD~s~~~l~~a~~~~~~~~~-----------~~~~~  145 (191)
                      ..+|+|+|||+|.++..+..        +       -|.-+|..-|.-..-....-+.......           ...+.
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~  143 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS  143 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence            45899999999987755532        1       1345777777655433322222211000           00011


Q ss_pred             eeEe---cCCCCCCCCCCCcceEEeCCcccCcCChHH
Q 029554          146 CFVV---GDEEFLPLKESSLDLAISCLGLHWTNDLPG  179 (191)
Q Consensus       146 ~~~~---~d~~~l~~~~~~fDlVis~~~l~~~~d~~~  179 (191)
                      .|+.   +.+-.-=||.++.++++|..+|||+...+.
T Consensus       144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~  180 (386)
T PLN02668        144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPE  180 (386)
T ss_pred             eEEEecCccccccccCCCceEEEEeeccceecccCch
Confidence            1221   222222378899999999999999865433

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.46  E-value=0.034  Score=42.30  Aligned_cols=68  Identities=15%  Similarity=0.062  Sum_probs=53.0

Q ss_pred             hhcCCCchHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHH
Q 029554           65 WLTRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK  132 (191)
Q Consensus        65 ~~y~~~~~~~~~~~~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~  132 (191)
                      ..|+.++..+..++..++.-+..+ .+++.+||-+|+.+|....++++..+...+++++.|+.+....-
T Consensus        49 ~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl  117 (231)
T COG1889          49 EEYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL  117 (231)
T ss_pred             cceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH
Confidence            357777777777777777766632 35788999999999999999988766678999999998654443

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.24  E-value=0.026  Score=44.37  Aligned_cols=96  Identities=11%  Similarity=0.043  Sum_probs=54.6

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhh---hccCCCCceeeEecCCCC---CCCCCCC-cce
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ---DAHNDNIETCFVVGDEEF---LPLKESS-LDL  164 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~---~~~~~~~~~~~~~~d~~~---l~~~~~~-fDl  164 (191)
                      ...|||+|+|+|..+...+..+ ..+|+..|....+......+..   ...+....+.+...+-..   ..+-... ||+
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl  165 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL  165 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHh-cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence            4569999999997776665532 4889999987765433322111   111122234444433221   1112233 999


Q ss_pred             EEeCCcccCcCChHHHHHHHHhcc
Q 029554          165 AISCLGLHWTNDLPGAMIQVSIFL  188 (191)
Q Consensus       165 Vis~~~l~~~~d~~~~l~~i~r~L  188 (191)
                      |++..++.........+.-++..|
T Consensus       166 ilasDvvy~~~~~e~Lv~tla~ll  189 (248)
T KOG2793|consen  166 ILASDVVYEEESFEGLVKTLAFLL  189 (248)
T ss_pred             EEEeeeeecCCcchhHHHHHHHHH
Confidence            999999877665555555554443

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=96.24  E-value=0.0058  Score=49.11  Aligned_cols=77  Identities=18%  Similarity=0.120  Sum_probs=56.4

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-C-CCCCCcceE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-P-LKESSLDLA  165 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~-~~~~~fDlV  165 (191)
                      ..++..|||+++++|.=+..+++... ...++++|+++.-+...+++..+  -...++.....|.... + .....||.|
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r--~g~~~v~~~~~D~~~~~~~~~~~~fd~V  160 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR--LGVFNVIVINADARKLDPKKPESKFDRV  160 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH--TT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHh--cCCceEEEEeeccccccccccccccchh
Confidence            56888999999999988888876543 57999999999999998888765  2344566665554433 1 223469999


Q ss_pred             Ee
Q 029554          166 IS  167 (191)
Q Consensus       166 is  167 (191)
                      +.
T Consensus       161 lv  162 (283)
T PF01189_consen  161 LV  162 (283)
T ss_dssp             EE
T ss_pred             hc
Confidence            86

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.22  E-value=0.033  Score=44.81  Aligned_cols=90  Identities=16%  Similarity=0.114  Sum_probs=67.2

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~  156 (191)
                      ..+.++.|.  ..+.+..+|.--|.|..++.+.+.++ ..+++++|-++.+++.|++....   -..++.++.+.+..+.
T Consensus        12 l~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~---~~~r~~~v~~~F~~l~   86 (314)
T COG0275          12 LNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE---FDGRVTLVHGNFANLA   86 (314)
T ss_pred             HHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc---cCCcEEEEeCcHHHHH
Confidence            445555555  56778999999999999998888765 46799999999999999998753   3456888888766432


Q ss_pred             -----CCCCCcceEEeCCccc
Q 029554          157 -----LKESSLDLAISCLGLH  172 (191)
Q Consensus       157 -----~~~~~fDlVis~~~l~  172 (191)
                           ...+++|.|+.-.++.
T Consensus        87 ~~l~~~~i~~vDGiL~DLGVS  107 (314)
T COG0275          87 EALKELGIGKVDGILLDLGVS  107 (314)
T ss_pred             HHHHhcCCCceeEEEEeccCC
Confidence                 2345788888765543

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.04  E-value=0.0094  Score=44.73  Aligned_cols=70  Identities=14%  Similarity=0.037  Sum_probs=47.3

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEec-CCCCC--------CCC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG-DEEFL--------PLK  158 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-d~~~l--------~~~  158 (191)
                      .+|+.+|||+||.+|.+++-..++. |..-|.|+|+-.-.             ....+.++++ |+..-        .++
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-------------p~~Ga~~i~~~dvtdp~~~~ki~e~lp  133 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-------------PPEGATIIQGNDVTDPETYRKIFEALP  133 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-------------CCCCcccccccccCCHHHHHHHHHhCC
Confidence            4578999999999999999887664 88899999974311             1112334444 33221        135


Q ss_pred             CCCcceEEeCCcc
Q 029554          159 ESSLDLAISCLGL  171 (191)
Q Consensus       159 ~~~fDlVis~~~l  171 (191)
                      +...|+|+|-+.-
T Consensus       134 ~r~VdvVlSDMap  146 (232)
T KOG4589|consen  134 NRPVDVVLSDMAP  146 (232)
T ss_pred             CCcccEEEeccCC
Confidence            6789999987654

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.90  E-value=0.046  Score=47.19  Aligned_cols=116  Identities=17%  Similarity=0.161  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHhccc-CCCeEEEEcCCccHHHHHHhhc----CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeE
Q 029554           74 VDAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRGR----GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFV  148 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~-~~~~VLDlGcG~G~~~~~l~~~----~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~  148 (191)
                      ++.+...|+++.+.... ....|+-+|+|-|.+.....+.    ...-++++++-+|..+--.+..-.+  .-..++.++
T Consensus       349 q~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~--~W~~~Vtii  426 (649)
T KOG0822|consen  349 QQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE--CWDNRVTII  426 (649)
T ss_pred             HHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh--hhcCeeEEE
Confidence            34455666666664222 2446888999999887655331    2346899999999987666553221  123459999


Q ss_pred             ecCCCCCCCCCCCcceEEeCC--cccCcCChHHHHHHHHhccCCC
Q 029554          149 VGDEEFLPLKESSLDLAISCL--GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       149 ~~d~~~l~~~~~~fDlVis~~--~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ..|+..++.+..+.|++||-+  ++..=+=-+..|.-+.+.|||+
T Consensus       427 ~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpd  471 (649)
T KOG0822|consen  427 SSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPD  471 (649)
T ss_pred             eccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCC
Confidence            999999885558899999843  2221112467888899999885

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=95.85  E-value=0.044  Score=41.46  Aligned_cols=100  Identities=15%  Similarity=-0.023  Sum_probs=59.6

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHH----H--HHHHhhhhccCCCCceeeEecCCCCCCCCCCC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDML----K--LCKDAQQDAHNDNIETCFVVGDEEFLPLKESS  161 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l----~--~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~  161 (191)
                      .+++.+|+|+=.|.|++++.+... ++...|+++-+.+...    +  .......+  ....++..+-.+.-.++ +.+.
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e--~~~aN~e~~~~~~~A~~-~pq~  122 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE--PVYANVEVIGKPLVALG-APQK  122 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh--hhhhhhhhhCCcccccC-CCCc
Confidence            468899999999999999999764 4555677765554311    0  01001100  12223444444433444 4456


Q ss_pred             cceEEeCCcccC-------cCChHHHHHHHHhccCCC
Q 029554          162 LDLAISCLGLHW-------TNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       162 fDlVis~~~l~~-------~~d~~~~l~~i~r~Lkpg  191 (191)
                      .|+++.+..-|-       -.....+.+++.++||||
T Consensus       123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPG  159 (238)
T COG4798         123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPG  159 (238)
T ss_pred             ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCC
Confidence            777776443332       234567889999999997

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=95.66  E-value=0.068  Score=44.11  Aligned_cols=64  Identities=9%  Similarity=0.073  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHhcccC-CCeEEEEcCCccHHHHHHhhc----C----CCceEEEEECChhHHHHHHHhhhh
Q 029554           74 VDAVAENLLDRLEDCRKT-FPTALCLGGSLEAVRRLLRGR----G----GIEKLIMMDTSYDMLKLCKDAQQD  137 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~~-~~~VLDlGcG~G~~~~~l~~~----~----~~~~v~~vD~s~~~l~~a~~~~~~  137 (191)
                      -+.++..++..+..+..| ...++|+|+|.|.++..+.+.    .    ...++..+++|++..+.=++....
T Consensus        59 Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~  131 (370)
T COG1565          59 GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA  131 (370)
T ss_pred             HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence            344566666666654444 347999999999998877643    2    357999999999988776666643

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=95.65  E-value=0.0012  Score=44.77  Aligned_cols=90  Identities=19%  Similarity=0.100  Sum_probs=32.4

Q ss_pred             EEEcCCccHHHHHHhhcCCC---ceEEEEECChh---HHHHHHHhhhhccCCCCceeeEecCCCC-CC-CCCCCcceEEe
Q 029554           96 LCLGGSLEAVRRLLRGRGGI---EKLIMMDTSYD---MLKLCKDAQQDAHNDNIETCFVVGDEEF-LP-LKESSLDLAIS  167 (191)
Q Consensus        96 LDlGcG~G~~~~~l~~~~~~---~~v~~vD~s~~---~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~-~~~~~fDlVis  167 (191)
                      ||+|+..|..+..+++..+.   .+++++|..+.   ..+..++ .    ....+++++.++... ++ ++.++||+|+.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~----~~~~~~~~~~g~s~~~l~~~~~~~~dli~i   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-A----GLSDRVEFIQGDSPDFLPSLPDGPIDLIFI   75 (106)
T ss_dssp             --------------------------EEEESS-------------G----GG-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-c----CCCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence            69999999998888764322   37999999995   2222222 1    223458888888653 21 23578999998


Q ss_pred             CCcccCcCChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      -..-. -+.....+..+...|+||
T Consensus        76 Dg~H~-~~~~~~dl~~~~~~l~~g   98 (106)
T PF13578_consen   76 DGDHS-YEAVLRDLENALPRLAPG   98 (106)
T ss_dssp             ES----HHHHHHHHHHHGGGEEEE
T ss_pred             CCCCC-HHHHHHHHHHHHHHcCCC
Confidence            65321 223345566666666664

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.53  E-value=0.091  Score=35.84  Aligned_cols=32  Identities=19%  Similarity=0.140  Sum_probs=26.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTS  124 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s  124 (191)
                      +....+|+|||+|.+.-.|...|  -.=.|+|.-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EG--y~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEG--YPGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCC--CCccccccc
Confidence            45679999999999999998877  566777753

; GO: 0008168 methyltransferase activity

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=95.43  E-value=0.28  Score=38.41  Aligned_cols=94  Identities=15%  Similarity=0.072  Sum_probs=47.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-CCCCC-CCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLPLK-ESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~l~~~-~~~fDlVis~  168 (191)
                      .+.+||.+|=+.-. +..++-.++..+++.+|+++.+++..++..++   ...++..+..|+. .+|.+ -++||++++.
T Consensus        44 ~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~---~gl~i~~~~~DlR~~LP~~~~~~fD~f~TD  119 (243)
T PF01861_consen   44 EGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEE---EGLPIEAVHYDLRDPLPEELRGKFDVFFTD  119 (243)
T ss_dssp             TT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHH---HT--EEEE---TTS---TTTSS-BSEEEE-
T ss_pred             cCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHH---cCCceEEEEecccccCCHHHhcCCCEEEeC
Confidence            56789999854432 22333334568999999999999998877765   2334788888865 45522 3789999974


Q ss_pred             CcccCcCChHHHHHHHHhccC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLL  189 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lk  189 (191)
                      =.-. .+-...++.+-...||
T Consensus       120 PPyT-~~G~~LFlsRgi~~Lk  139 (243)
T PF01861_consen  120 PPYT-PEGLKLFLSRGIEALK  139 (243)
T ss_dssp             --SS-HHHHHHHHHHHHHTB-
T ss_pred             CCCC-HHHHHHHHHHHHHHhC
Confidence            1100 1122345555555555

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=95.38  E-value=0.32  Score=38.32  Aligned_cols=98  Identities=20%  Similarity=0.179  Sum_probs=63.7

Q ss_pred             CCeEEEEcCCccHHHHHHhhc----CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC----CCCCCCCCcc
Q 029554           92 FPTALCLGGSLEAVRRLLRGR----GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE----FLPLKESSLD  163 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~----~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~----~l~~~~~~fD  163 (191)
                      ....+|+|+|+..=++.|.+.    +...+++-+|+|...+....+.+.. ......+.-+++|.+    .+| ..+.==
T Consensus        79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~-~y~~l~v~~l~~~~~~~La~~~-~~~~Rl  156 (321)
T COG4301          79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILR-EYPGLEVNALCGDYELALAELP-RGGRRL  156 (321)
T ss_pred             cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHH-hCCCCeEeehhhhHHHHHhccc-CCCeEE
Confidence            457899999999877777554    3447899999999988766554432 123344666667754    233 222222


Q ss_pred             eEEeCCcccCc--CChHHHHHHHHhccCCC
Q 029554          164 LAISCLGLHWT--NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       164 lVis~~~l~~~--~d~~~~l~~i~r~Lkpg  191 (191)
                      +++...+|..+  ++-..++.+++.+|+||
T Consensus       157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pG  186 (321)
T COG4301         157 FVFLGSTLGNLTPGECAVFLTQLRGALRPG  186 (321)
T ss_pred             EEEecccccCCChHHHHHHHHHHHhcCCCc
Confidence            23334456554  24567899999999997

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.30  E-value=0.084  Score=42.22  Aligned_cols=70  Identities=14%  Similarity=0.111  Sum_probs=51.8

Q ss_pred             eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC--CCCcceEEeCCcc
Q 029554           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK--ESSLDLAISCLGL  171 (191)
Q Consensus        94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~--~~~fDlVis~~~l  171 (191)
                      +|+|+-||.|.+..-+...+ ...+.++|+++..++..+.+...        .....|+..+...  .+.+|+|+...-.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~--------~~~~~Di~~~~~~~~~~~~D~l~~gpPC   72 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPN--------KLIEGDITKIDEKDFIPDIDLLTGGFPC   72 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCC--------CCccCccccCchhhcCCCCCEEEeCCCC
Confidence            58999999999988888765 56789999999999888776532        1455666655422  3579999986543


Q ss_pred             c
Q 029554          172 H  172 (191)
Q Consensus       172 ~  172 (191)
                      +
T Consensus        73 q   73 (275)
T cd00315          73 Q   73 (275)
T ss_pred             h
Confidence            3

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.23  E-value=0.063  Score=38.87  Aligned_cols=94  Identities=13%  Similarity=0.008  Sum_probs=59.7

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE  159 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~  159 (191)
                      ..+..+.  ..+.++.+|+|+|.|......++.+ ...-+|++.++=.+...+-..-+ ......+.|..-|+-...+.+
T Consensus        63 nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R-~g~~k~trf~RkdlwK~dl~d  138 (199)
T KOG4058|consen   63 NVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWR-AGCAKSTRFRRKDLWKVDLRD  138 (199)
T ss_pred             HHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHH-Hhcccchhhhhhhhhhccccc
Confidence            4444444  4566889999999999987777655 46789999999887776533211 133455777777766555443


Q ss_pred             CCcceEEeCCcccCcCChHH
Q 029554          160 SSLDLAISCLGLHWTNDLPG  179 (191)
Q Consensus       160 ~~fDlVis~~~l~~~~d~~~  179 (191)
                        |..|+...+-.-++|+..
T Consensus       139 --y~~vviFgaes~m~dLe~  156 (199)
T KOG4058|consen  139 --YRNVVIFGAESVMPDLED  156 (199)
T ss_pred             --cceEEEeehHHHHhhhHH
Confidence              444554444444445443

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.16  E-value=0.082  Score=40.23  Aligned_cols=53  Identities=11%  Similarity=0.065  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~  133 (191)
                      .+.++++...   ..++..|||.=||+|..+......+  .+++|+|+++...+.|++
T Consensus       179 ~l~~~lI~~~---t~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  179 ELIERLIKAS---TNPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHH---S-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHhh---hccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence            3444444332   4578999999999999998888877  889999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=94.83  E-value=0.11  Score=42.78  Aligned_cols=85  Identities=15%  Similarity=0.002  Sum_probs=42.6

Q ss_pred             CCeEEEEcCCccHHHHHHhhc--------C--------CCceEEEEECChhHHHHHHHhhhhc-----cCCCCceeeEec
Q 029554           92 FPTALCLGGSLEAVRRLLRGR--------G--------GIEKLIMMDTSYDMLKLCKDAQQDA-----HNDNIETCFVVG  150 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~--------~--------~~~~v~~vD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~~  150 (191)
                      .-+|+|+||..|.++..+...        +        |.-+|+-.|.-..-....-+.+...     .....-+.-+.+
T Consensus        17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg   96 (334)
T PF03492_consen   17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG   96 (334)
T ss_dssp             EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred             ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence            348999999999988776531        1        2347888896554333222222110     001111222234


Q ss_pred             CCCCCCCCCCCcceEEeCCcccCcCC
Q 029554          151 DEEFLPLKESSLDLAISCLGLHWTND  176 (191)
Q Consensus       151 d~~~l~~~~~~fDlVis~~~l~~~~d  176 (191)
                      .+-.-=+|+++.|+++|..+|||+..
T Consensus        97 SFy~rLfP~~Svh~~~Ss~alHWLS~  122 (334)
T PF03492_consen   97 SFYGRLFPSNSVHFGHSSYALHWLSQ  122 (334)
T ss_dssp             -TTS--S-TT-EEEEEEES-TTB-SS
T ss_pred             hhhhccCCCCceEEEEEechhhhccc
Confidence            44333368899999999999999854

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.81  E-value=0.14  Score=42.30  Aligned_cols=98  Identities=15%  Similarity=0.089  Sum_probs=58.2

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCC-ceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC----CCCCCCCCCCcceE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGI-EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD----EEFLPLKESSLDLA  165 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d----~~~l~~~~~~fDlV  165 (191)
                      .+.+|||+|.|+|.-...+-...|. .+++.++.|+..-+....-...  .......+...|    -..+| +...|++|
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~n--v~t~~td~r~s~vt~dRl~lp-~ad~ytl~  189 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAEN--VSTEKTDWRASDVTEDRLSLP-AADLYTLA  189 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhh--cccccCCCCCCccchhccCCC-ccceeehh
Confidence            4567999999999887777665553 5788899888765555433321  111122333333    23344 23567877


Q ss_pred             EeCCcccCcCC---hHHHHHHHHhccCCC
Q 029554          166 ISCLGLHWTND---LPGAMIQVSIFLLPD  191 (191)
Q Consensus       166 is~~~l~~~~d---~~~~l~~i~r~Lkpg  191 (191)
                      +...-|-+...   +...+..+..++.||
T Consensus       190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~g  218 (484)
T COG5459         190 IVLDELLPDGNEKPIQVNIERLWNLLAPG  218 (484)
T ss_pred             hhhhhhccccCcchHHHHHHHHHHhccCC
Confidence            76555444432   334677777777765

>PRK11524 putative methyltransferase; Provisional

Probab=94.73  E-value=0.14  Score=41.19  Aligned_cols=47  Identities=11%  Similarity=0.031  Sum_probs=41.9

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD  137 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~  137 (191)
                      ..+++.|||-=||+|..+....+.+  .+++|+|++++.++.+++++..
T Consensus       206 S~~GD~VLDPF~GSGTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        206 SNPGDIVLDPFAGSFTTGAVAKASG--RKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCCEEEECCCCCcHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence            5688999999999999988887777  8999999999999999998753

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=94.69  E-value=0.14  Score=42.62  Aligned_cols=42  Identities=10%  Similarity=0.067  Sum_probs=34.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~  133 (191)
                      +-..|+|+|+|.|++++.+.=.+ ...|.++|.|....++|++
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence            45579999999999999997544 3789999999888777754

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=94.67  E-value=0.061  Score=41.31  Aligned_cols=60  Identities=17%  Similarity=0.111  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHhc--ccCCCeEEEEcCCccHHHHHHh--hcCCCceEEEEECChhHHHHHHHhh
Q 029554           76 AVAENLLDRLEDC--RKTFPTALCLGGSLEAVRRLLR--GRGGIEKLIMMDTSYDMLKLCKDAQ  135 (191)
Q Consensus        76 ~~~~~l~~~l~~~--~~~~~~VLDlGcG~G~~~~~l~--~~~~~~~v~~vD~s~~~l~~a~~~~  135 (191)
                      .++.++..+....  ...+-++.|-+||.|++.-.+.  .......|++-|+++++++.|+++.
T Consensus        34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL   97 (246)
T PF11599_consen   34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNL   97 (246)
T ss_dssp             HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence            4455555554332  2234489999999999866552  3334589999999999999998874

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=94.65  E-value=0.17  Score=42.96  Aligned_cols=54  Identities=9%  Similarity=0.107  Sum_probs=41.8

Q ss_pred             eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEe
Q 029554           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVV  149 (191)
Q Consensus        94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~  149 (191)
                      .|||+|.|||.++......+ ...|++++.-..|.+.+++.... +.-.+++.++.
T Consensus        69 ~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~k-ng~SdkI~vIn  122 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHK-NGMSDKINVIN  122 (636)
T ss_pred             EEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhc-CCCccceeeec
Confidence            58999999999988777666 46799999999999999887754 22234555544

>PHA01634 hypothetical protein

Probab=94.55  E-value=0.28  Score=34.68  Aligned_cols=47  Identities=11%  Similarity=0.045  Sum_probs=39.7

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhh
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ  136 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~  136 (191)
                      .-.+.+|+|+|++-|..+..+.-++ ...|+++++++...+..++..+
T Consensus        26 dvk~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k   72 (156)
T PHA01634         26 NVYQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCA   72 (156)
T ss_pred             eecCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhh
Confidence            4467899999999999998887665 5789999999999998887654

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=94.33  E-value=0.4  Score=41.59  Aligned_cols=97  Identities=10%  Similarity=-0.033  Sum_probs=59.2

Q ss_pred             CchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC----CceEEEEECChhHHHHHHHhhhhccCCCC-c
Q 029554           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG----IEKLIMMDTSYDMLKLCKDAQQDAHNDNI-E  144 (191)
Q Consensus        70 ~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-~  144 (191)
                      .++....-..+++..+.. +.+..+|+|-.||+|.+.....+...    ...++|.|+++.....|+.+.--  +... .
T Consensus       166 GEfyTP~~v~~liv~~l~-~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l--hgi~~~  242 (489)
T COG0286         166 GEFYTPREVSELIVELLD-PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL--HGIEGD  242 (489)
T ss_pred             CccCChHHHHHHHHHHcC-CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH--hCCCcc
Confidence            445444333344444332 24566999999999987665543221    25699999999999999876532  1111 3


Q ss_pred             eeeEecCCCCCC-C----CCCCcceEEeCC
Q 029554          145 TCFVVGDEEFLP-L----KESSLDLAISCL  169 (191)
Q Consensus       145 ~~~~~~d~~~l~-~----~~~~fDlVis~~  169 (191)
                      .....+|...-| .    ..+.||.|++|-
T Consensus       243 ~~i~~~dtl~~~~~~~~~~~~~~D~viaNP  272 (489)
T COG0286         243 ANIRHGDTLSNPKHDDKDDKGKFDFVIANP  272 (489)
T ss_pred             ccccccccccCCcccccCCccceeEEEeCC
Confidence            455555543333 2    336799999973

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.31  E-value=0.26  Score=38.36  Aligned_cols=87  Identities=15%  Similarity=0.078  Sum_probs=57.2

Q ss_pred             CCeEEEEcCCccHHHHHHhhcC----C-----CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC------
Q 029554           92 FPTALCLGGSLEAVRRLLRGRG----G-----IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP------  156 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~----~-----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~------  156 (191)
                      -.+++|+++.+|.|++.|.+..    +     ...+++||+.+-.             ....+..+++|+....      
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-------------PI~GV~qlq~DIT~~stae~Ii  108 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-------------PIEGVIQLQGDITSASTAEAII  108 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-------------ccCceEEeecccCCHhHHHHHH
Confidence            3579999999999999987642    1     1239999986521             2334677778876532      


Q ss_pred             --CCCCCcceEEeCCc-----ccCcCCh------HHHHHHHHhccCCC
Q 029554          157 --LKESSLDLAISCLG-----LHWTNDL------PGAMIQVSIFLLPD  191 (191)
Q Consensus       157 --~~~~~fDlVis~~~-----l~~~~d~------~~~l~~i~r~Lkpg  191 (191)
                        |...+.|+|||-.+     +|.+++.      .++|.-...+||||
T Consensus       109 ~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~G  156 (294)
T KOG1099|consen  109 EHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPG  156 (294)
T ss_pred             HHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCC
Confidence              55668999999764     5544321      23444555778876

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=94.27  E-value=0.097  Score=42.42  Aligned_cols=99  Identities=16%  Similarity=0.172  Sum_probs=63.1

Q ss_pred             CeEEEEcCCccHHHHHHhhcC--------------------CCceEEEEECCh--hHHHHHHHhhhhc------------
Q 029554           93 PTALCLGGSLEAVRRLLRGRG--------------------GIEKLIMMDTSY--DMLKLCKDAQQDA------------  138 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~--------------------~~~~v~~vD~s~--~~l~~a~~~~~~~------------  138 (191)
                      .+||+||.|.|.....++...                    +.-.++.+|+.+  ..+......+...            
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            589999999986655554322                    113899999876  4555555444321            


Q ss_pred             ---cCCCCceeeEecCCCCCCCCC-------CCcceEEeCCcccC-----cCChHHHHHHHHhccCCC
Q 029554          139 ---HNDNIETCFVVGDEEFLPLKE-------SSLDLAISCLGLHW-----TNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       139 ---~~~~~~~~~~~~d~~~l~~~~-------~~fDlVis~~~l~~-----~~d~~~~l~~i~r~Lkpg  191 (191)
                         ....-++.|.+.|+..+..++       ...++|...+++.-     +..-..+|.++..+++||
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~G  235 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPG  235 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCC
Confidence               112346788888877654221       24688877666652     234456888888888887

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=94.23  E-value=0.17  Score=39.44  Aligned_cols=95  Identities=13%  Similarity=-0.001  Sum_probs=55.4

Q ss_pred             HHHHHHHHh----cccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEec-CCC
Q 029554           79 ENLLDRLED----CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG-DEE  153 (191)
Q Consensus        79 ~~l~~~l~~----~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-d~~  153 (191)
                      ..+.+.|..    +..+..++||||.|..-+-..+--+-=..+.+|.|+++..++.|+.......+....++.... |-.
T Consensus        62 h~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~  141 (292)
T COG3129          62 HHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD  141 (292)
T ss_pred             HHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc
Confidence            344444443    233455899999886544333322111378999999999999998877542122222333322 211


Q ss_pred             ----CCCCCCCCcceEEeCCcccC
Q 029554          154 ----FLPLKESSLDLAISCLGLHW  173 (191)
Q Consensus       154 ----~l~~~~~~fDlVis~~~l~~  173 (191)
                          .+--..+.||++.||--+|-
T Consensus       142 ~if~giig~nE~yd~tlCNPPFh~  165 (292)
T COG3129         142 AIFNGIIGKNERYDATLCNPPFHD  165 (292)
T ss_pred             ccccccccccceeeeEecCCCcch
Confidence                11122467999999988774

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=94.09  E-value=0.35  Score=36.99  Aligned_cols=97  Identities=15%  Similarity=0.056  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhc----CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-------C-C
Q 029554           91 TFPTALCLGGSLEAVRRLLRGR----GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-------L-K  158 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~----~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-------~-~  158 (191)
                      .+..|+|+|.-.|..+..++..    ++..+|+++|+.-.-........   .....+++++++|.....       . .
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~---hp~~~rI~~i~Gds~d~~~~~~v~~~~~  108 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES---HPMSPRITFIQGDSIDPEIVDQVRELAS  108 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-------TTEEEEES-SSSTHHHHTSGSS--
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh---ccccCceEEEECCCCCHHHHHHHHHhhc
Confidence            4678999999999887766542    36689999999755443322111   123456999999855321       1 1


Q ss_pred             CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ...-.+|+ --+-|...+....|.....+++||
T Consensus       109 ~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G  140 (206)
T PF04989_consen  109 PPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPG  140 (206)
T ss_dssp             --SSEEEE-ESS----SSHHHHHHHHHHT--TT
T ss_pred             cCCceEEE-ECCCccHHHHHHHHHHhCccCCCC
Confidence            12233444 333344456677888888888876

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=93.83  E-value=0.57  Score=39.10  Aligned_cols=94  Identities=18%  Similarity=0.145  Sum_probs=58.8

Q ss_pred             cCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-----C-CC-CCCC
Q 029554           90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-----L-PL-KESS  161 (191)
Q Consensus        90 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-----l-~~-~~~~  161 (191)
                      .++.+||.+|||. |..+..+++.....+++++|.++..++.+++...        ..++......     + .+ ....
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~--------~~vi~~~~~~~~~~~l~~~~~~~~  254 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG--------AETINFEEVDDVVEALRELTGGRG  254 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC--------cEEEcCCcchHHHHHHHHHcCCCC
Confidence            4677899999987 7777777776544579999999999888876421        1111111110     0 11 2236


Q ss_pred             cceEEeCCcc---------------cCcCChHHHHHHHHhccCCC
Q 029554          162 LDLAISCLGL---------------HWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       162 fDlVis~~~l---------------~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +|+|+....-               +-..|....+.++.++|+|+
T Consensus       255 ~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  299 (386)
T cd08283         255 PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKG  299 (386)
T ss_pred             CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccC
Confidence            9999875421               11244566788888888764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PTZ00357 methyltransferase; Provisional

Probab=93.77  E-value=0.49  Score=42.57  Aligned_cols=97  Identities=12%  Similarity=0.045  Sum_probs=58.9

Q ss_pred             eEEEEcCCccHHHHHHhhc----CCCceEEEEECChhHHHHHHHh---hhhccCC----CCceeeEecCCCCCCCCC---
Q 029554           94 TALCLGGSLEAVRRLLRGR----GGIEKLIMMDTSYDMLKLCKDA---QQDAHND----NIETCFVVGDEEFLPLKE---  159 (191)
Q Consensus        94 ~VLDlGcG~G~~~~~l~~~----~~~~~v~~vD~s~~~l~~a~~~---~~~~~~~----~~~~~~~~~d~~~l~~~~---  159 (191)
                      .|+-+|+|-|.+.....+.    +-..+++++|-++........+   ...|.+.    ...+.++..|+..+..+.   
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            5899999999886655332    3345899999996633333222   2344332    346899999988764321   


Q ss_pred             --------CCcceEEeCC--cccCcCChHHHHHHHHhccCC
Q 029554          160 --------SSLDLAISCL--GLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       160 --------~~fDlVis~~--~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                              +++|+|||-+  ++-.=+=-++.|.-+.+.||+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKd  823 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLED  823 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhh
Confidence                    4799999832  222111124566666666653

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=93.60  E-value=0.096  Score=41.79  Aligned_cols=39  Identities=15%  Similarity=0.047  Sum_probs=30.6

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHH
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDML  128 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l  128 (191)
                      ...+.+|||+|||.|.-.......+ ...++..|.|...+
T Consensus       114 ~~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl  152 (282)
T KOG2920|consen  114 SFSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVL  152 (282)
T ss_pred             EecCceeEecCCcccccchhhhhhc-cceeeeEecchhhe
Confidence            4467899999999998887776544 26788888888776

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=93.57  E-value=0.12  Score=44.41  Aligned_cols=86  Identities=13%  Similarity=0.074  Sum_probs=57.1

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChh----HHHHHHHhhhhccCCCCceeeEecC-CCCCCCCCCCcceEEe
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYD----MLKLCKDAQQDAHNDNIETCFVVGD-EEFLPLKESSLDLAIS  167 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~----~l~~a~~~~~~~~~~~~~~~~~~~d-~~~l~~~~~~fDlVis  167 (191)
                      ..|+|+.+|.|.++..|.+..    |..+..-+.    .+...-++.         ..-...| .|.++.-+.+||+|.+
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~~~~ntL~vIydRG---------LIG~yhDWCE~fsTYPRTYDLlHA  433 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDP----VWVMNVVPVSGPNTLPVIYDRG---------LIGVYHDWCEAFSTYPRTYDLLHA  433 (506)
T ss_pred             eeeeeecccccHHHHHhccCC----ceEEEecccCCCCcchhhhhcc---------cchhccchhhccCCCCcchhheeh
Confidence            469999999999999998742    444443332    122111110         1112234 4566656689999999


Q ss_pred             CCcccCcC---ChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTN---DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~---d~~~~l~~i~r~Lkpg  191 (191)
                      +..+....   +...+|-|+-|+|+|+
T Consensus       434 ~~lfs~~~~rC~~~~illEmDRILRP~  460 (506)
T PF03141_consen  434 DGLFSLYKDRCEMEDILLEMDRILRPG  460 (506)
T ss_pred             hhhhhhhcccccHHHHHHHhHhhcCCC
Confidence            98776543   5788999999999996

; GO: 0008168 methyltransferase activity

>PRK13699 putative methylase; Provisional

Probab=93.47  E-value=0.35  Score=37.57  Aligned_cols=47  Identities=6%  Similarity=-0.090  Sum_probs=41.3

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD  137 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~  137 (191)
                      ..++..|||-=||+|..+....+.+  .+++|+|+++...+.+.+++..
T Consensus       161 s~~g~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        161 THPNAIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHHH
Confidence            4578899999999999988887777  8999999999999999888754

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=93.28  E-value=0.55  Score=38.72  Aligned_cols=72  Identities=19%  Similarity=0.201  Sum_probs=47.2

Q ss_pred             ccCCCeEEEEcCC-ccHHHHHHhh-cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEec-CCCCCCCCCCCcceE
Q 029554           89 RKTFPTALCLGGS-LEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG-DEEFLPLKESSLDLA  165 (191)
Q Consensus        89 ~~~~~~VLDlGcG-~G~~~~~l~~-~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-d~~~l~~~~~~fDlV  165 (191)
                      ..|+.+|+=+|+| .|..+..+++ .+  .+|+++|.|++-++.+++-..        ..++.. |.+..+.-.+.||+|
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGA--------d~~i~~~~~~~~~~~~~~~d~i  233 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGA--------DHVINSSDSDALEAVKEIADAI  233 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCC--------cEEEEcCCchhhHHhHhhCcEE
Confidence            4578888888776 5567777777 45  999999999999988876532        122332 222222111239999


Q ss_pred             EeCCc
Q 029554          166 ISCLG  170 (191)
Q Consensus       166 is~~~  170 (191)
                      +..-.
T Consensus       234 i~tv~  238 (339)
T COG1064         234 IDTVG  238 (339)
T ss_pred             EECCC
Confidence            98765

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=93.13  E-value=0.45  Score=37.35  Aligned_cols=70  Identities=16%  Similarity=0.166  Sum_probs=51.8

Q ss_pred             hhcCCCchHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChh----HHHHHHHh
Q 029554           65 WLTRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYD----MLKLCKDA  134 (191)
Q Consensus        65 ~~y~~~~~~~~~~~~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~----~l~~a~~~  134 (191)
                      ..|.-++.++..++..++--+..+ ..|+.+||-||++.|....++.+. +|..-|++++.|..    ++..|+++
T Consensus       129 vEyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR  204 (317)
T KOG1596|consen  129 VEYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR  204 (317)
T ss_pred             EEEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc
Confidence            346667777888777776655553 358889999999999998888775 56778999999985    44444443

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=92.81  E-value=0.28  Score=35.21  Aligned_cols=74  Identities=20%  Similarity=0.232  Sum_probs=44.2

Q ss_pred             eEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceEEeCCcccCcCC------hH---HHHHHHH
Q 029554          117 KLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLAISCLGLHWTND------LP---GAMIQVS  185 (191)
Q Consensus       117 ~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlVis~~~l~~~~d------~~---~~l~~i~  185 (191)
                      +|+++|+-+..++..+++..+. ....++.++..+=+.+.  .+++++|+|+-|++.---.|      +.   .++..+.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~-~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al   79 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEA-GLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL   79 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHT-T-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhc-CCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence            5899999999999999998762 22346888876644332  23358999998866322222      33   4566666


Q ss_pred             hccCCC
Q 029554          186 IFLLPD  191 (191)
Q Consensus       186 r~Lkpg  191 (191)
                      ++|+||
T Consensus        80 ~lL~~g   85 (140)
T PF06962_consen   80 ELLKPG   85 (140)
T ss_dssp             HHEEEE
T ss_pred             HhhccC
Confidence            666664

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=92.67  E-value=0.76  Score=35.68  Aligned_cols=93  Identities=11%  Similarity=0.129  Sum_probs=53.0

Q ss_pred             HHHHHHHHHhhhhcCCCchHHH-HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHH
Q 029554           54 HLKRKQRDRAAWLTRPNDSFVD-AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK  132 (191)
Q Consensus        54 ~~~~~~~~~~a~~y~~~~~~~~-~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~  132 (191)
                      +.+..|+-+++....+ +|+-+ .+.+.+......+  ..+-|.+||.|+|..++.+...+ ..++..++.+...+.-.+
T Consensus        15 e~i~lYRLqA~K~LSQ-NfLMD~~lT~KIvK~A~~~--~~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ   90 (326)
T KOG0821|consen   15 EIIKLYRLQAAKQLSQ-NFLMDLRLTDKIVKKAGNL--TNAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQ   90 (326)
T ss_pred             HHHHHHHHHHHHHHhH-hHHhhhHHHHHHHHhcccc--ccceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHH
Confidence            3444454455433222 23222 2334444333322  34569999999999999998764 468889999887665554


Q ss_pred             HhhhhccCCCCceeeEecCCC
Q 029554          133 DAQQDAHNDNIETCFVVGDEE  153 (191)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~d~~  153 (191)
                      --.+.   ...+..++.+|+.
T Consensus        91 ~L~EA---a~~~~~IHh~D~L  108 (326)
T KOG0821|consen   91 MLSEA---APGKLRIHHGDVL  108 (326)
T ss_pred             HHhhc---CCcceEEeccccc
Confidence            32221   2234555555543

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=92.39  E-value=0.3  Score=39.35  Aligned_cols=101  Identities=19%  Similarity=0.156  Sum_probs=70.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhc--cCCCCceeeEecC-CCCCC-CCCCCcceEE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGD-EEFLP-LKESSLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~~~~~d-~~~l~-~~~~~fDlVi  166 (191)
                      .+.+||-||-|.|...+....+-...++..+|+....++..++-.+..  +-...++.+..+| +..+. .+.++||+|+
T Consensus       121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii  200 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII  200 (337)
T ss_pred             CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence            356899999999999887777655689999999999999988766542  2234567888887 33222 3478999998


Q ss_pred             eCCcccCcC----ChHHHHHHHHhccCCC
Q 029554          167 SCLGLHWTN----DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~~~----d~~~~l~~i~r~Lkpg  191 (191)
                      .-..=.-.+    =...++.-+.+.||||
T Consensus       201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~d  229 (337)
T KOG1562|consen  201 TDSSDPVGPACALFQKPYFGLVLDALKGD  229 (337)
T ss_pred             EecCCccchHHHHHHHHHHHHHHHhhCCC
Confidence            643311111    0234677788888876

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=91.89  E-value=0.54  Score=39.02  Aligned_cols=92  Identities=12%  Similarity=-0.017  Sum_probs=59.7

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC-CCCCcceEEeCCc
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-KESSLDLAISCLG  170 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~fDlVis~~~  170 (191)
                      ..+|||-=||+|.=+..++...+..+++.-|+|+..++..+++...  |...+...+..|...+-. ....||+|=    
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~--N~~~~~~v~n~DAN~lm~~~~~~fd~ID----  126 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRL--NSGEDAEVINKDANALLHELHRAFDVID----  126 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHh--cCcccceeecchHHHHHHhcCCCccEEe----
Confidence            5689999999998887776655455899999999999999998875  434445555555443211 125677773    


Q ss_pred             ccCcCChHHHHHHHHhccC
Q 029554          171 LHWTNDLPGAMIQVSIFLL  189 (191)
Q Consensus       171 l~~~~d~~~~l~~i~r~Lk  189 (191)
                      +.-+..+..++....+.++
T Consensus       127 iDPFGSPaPFlDaA~~s~~  145 (380)
T COG1867         127 IDPFGSPAPFLDAALRSVR  145 (380)
T ss_pred             cCCCCCCchHHHHHHHHhh
Confidence            3333344445554444443

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=91.61  E-value=2  Score=37.59  Aligned_cols=92  Identities=14%  Similarity=0.108  Sum_probs=56.5

Q ss_pred             cCCCeEEEEcCCccHH-HHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-----------CC-
Q 029554           90 KTFPTALCLGGSLEAV-RRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-----------LP-  156 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~-~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-----------l~-  156 (191)
                      .++.+|+=+|||.=.+ +...++... +.|+++|.++.-++++++-.         ..+...+..+           +. 
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aeslG---------A~~v~i~~~e~~~~~~gya~~~s~  232 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESMG---------AEFLELDFEEEGGSGDGYAKVMSE  232 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcC---------CeEEEeccccccccccchhhhcch
Confidence            3678999999997544 444444332 58999999999988887632         1111111100           00 


Q ss_pred             ---------CCC--CCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          157 ---------LKE--SSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ---------~~~--~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                               +.+  +.+|+||.......-+.+..+.++..+.+|||
T Consensus       233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpG  278 (509)
T PRK09424        233 EFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPG  278 (509)
T ss_pred             hHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCC
Confidence                     011  46999998876544334444458888888876

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.25  E-value=0.024  Score=41.25  Aligned_cols=40  Identities=18%  Similarity=0.158  Sum_probs=34.1

Q ss_pred             CCCCCCCCCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          152 EEFLPLKESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       152 ~~~l~~~~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      ....+|.+++.|+|.+..++.|+.  ....+++++.++||||
T Consensus        38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~   79 (185)
T COG4627          38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPG   79 (185)
T ss_pred             hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcC
Confidence            345678899999999999999874  5567899999999996

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=90.97  E-value=0.89  Score=38.45  Aligned_cols=76  Identities=13%  Similarity=0.030  Sum_probs=55.1

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---CCCCCcce
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---LKESSLDL  164 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---~~~~~fDl  164 (191)
                      +.++.+|||+++.+|.=+-+++.. .....+++.|.+..-+...++.+.+  -+..++..+..|...+|   ++. +||-
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r--lGv~ntiv~n~D~~ef~~~~~~~-~fDR  315 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR--LGVTNTIVSNYDGREFPEKEFPG-SFDR  315 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH--hCCCceEEEccCcccccccccCc-ccce
Confidence            668889999999998665555432 1235899999999998888887765  23456667777765554   443 8999


Q ss_pred             EEe
Q 029554          165 AIS  167 (191)
Q Consensus       165 Vis  167 (191)
                      |+.
T Consensus       316 VLL  318 (460)
T KOG1122|consen  316 VLL  318 (460)
T ss_pred             eee
Confidence            984

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=90.59  E-value=2.4  Score=35.13  Aligned_cols=87  Identities=28%  Similarity=0.263  Sum_probs=56.7

Q ss_pred             CCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-C-----CCCCC-CCc
Q 029554           91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-F-----LPLKE-SSL  162 (191)
Q Consensus        91 ~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~-----l~~~~-~~f  162 (191)
                      ++.+|+=+|||+ |.++..+++..+..+|+++|.++.-++.|++....        .......+ .     ..... ..+
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~--------~~~~~~~~~~~~~~~~~~t~g~g~  239 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA--------DVVVNPSEDDAGAEILELTGGRGA  239 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC--------eEeecCccccHHHHHHHHhCCCCC
Confidence            344899999996 56666677777778999999999999999874421        11111111 0     11122 369


Q ss_pred             ceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          163 DLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       163 DlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |+|+=..+      ...++.++.++++|+
T Consensus       240 D~vie~~G------~~~~~~~ai~~~r~g  262 (350)
T COG1063         240 DVVIEAVG------SPPALDQALEALRPG  262 (350)
T ss_pred             CEEEECCC------CHHHHHHHHHHhcCC
Confidence            99987655      244677777777764

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=90.15  E-value=0.88  Score=38.94  Aligned_cols=85  Identities=19%  Similarity=0.103  Sum_probs=51.4

Q ss_pred             CCCeEEEEcCCccHHHHHH--hhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC----CCCCCCC-CCCcc
Q 029554           91 TFPTALCLGGSLEAVRRLL--RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD----EEFLPLK-ESSLD  163 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l--~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d----~~~l~~~-~~~fD  163 (191)
                      .+..+.|+|.|.|.-...+  .-+.....++.||.|..|.....+....   .......+.-.    -..+|.. ...||
T Consensus       200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~---~~~~g~~~v~~~~~~r~~~pi~~~~~yD  276 (491)
T KOG2539|consen  200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD---GSHIGEPIVRKLVFHRQRLPIDIKNGYD  276 (491)
T ss_pred             ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC---hhhcCchhccccchhcccCCCCccccee
Confidence            3456788888766443333  2233357899999999999988776642   11111111111    1123322 34599


Q ss_pred             eEEeCCcccCcCChH
Q 029554          164 LAISCLGLHWTNDLP  178 (191)
Q Consensus       164 lVis~~~l~~~~d~~  178 (191)
                      +|++.+.+++..+..
T Consensus       277 lvi~ah~l~~~~s~~  291 (491)
T KOG2539|consen  277 LVICAHKLHELGSKF  291 (491)
T ss_pred             eEEeeeeeeccCCch
Confidence            999999999986543

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=89.93  E-value=0.92  Score=36.05  Aligned_cols=36  Identities=8%  Similarity=0.138  Sum_probs=29.5

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcC-----CCceEEEEECCh
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRG-----GIEKLIMMDTSY  125 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~-----~~~~v~~vD~s~  125 (191)
                      .+...++|+|||.|.++.++....     +...++.+|-..
T Consensus        17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~   57 (259)
T PF05206_consen   17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS   57 (259)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence            456689999999999999998765     456899999754

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=88.19  E-value=2  Score=36.04  Aligned_cols=137  Identities=8%  Similarity=-0.063  Sum_probs=75.6

Q ss_pred             cccCHHHHHHHHH-HhhhhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhH
Q 029554           49 SIFDRHLKRKQRD-RAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDM  127 (191)
Q Consensus        49 ~~~d~~~~~~~~~-~~a~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~  127 (191)
                      .+.|+..++.+|. ..++.|.+..   .+-...+.+.+.  ..+.+...|+|+|-|.....++..+.+..-+|+++...-
T Consensus       154 sipd~~~L~~hYk~~ss~~YGE~~---~~ql~si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~p  228 (419)
T KOG3924|consen  154 SIPDPAILNQHYKSFSSETYGETQ---LEQLRSIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKP  228 (419)
T ss_pred             ccCCHHHHHHhhccccccchhhhh---HHHHHHHHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCc
Confidence            4678877774444 3344444421   111223444444  457778899999999999998887767788888887654


Q ss_pred             HHHHHHhhh-------hccCCCCceeeEecCCCCCC---CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          128 LKLCKDAQQ-------DAHNDNIETCFVVGDEEFLP---LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       128 l~~a~~~~~-------~~~~~~~~~~~~~~d~~~l~---~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      -+.+..+..       ..+.....+..+.+++..-.   .-....++|++|.+.-- +++..-+.++..-+++|
T Consensus       229 S~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~g  301 (419)
T KOG3924|consen  229 SQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDG  301 (419)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCc
Confidence            433332211       12233344566666544211   11245788888776542 22222333554444443

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=87.28  E-value=0.58  Score=37.87  Aligned_cols=73  Identities=10%  Similarity=-0.040  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCccHHHH-HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEE
Q 029554           91 TFPTALCLGGSLEAVRR-LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~-~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVi  166 (191)
                      .+..|+|+=+|-|+++. .|...+ ...|+++|.+|..++..+..+.. ++......++.+|....- +....|-|.
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~-N~V~~r~~i~~gd~R~~~-~~~~AdrVn  267 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEA-NNVMDRCRITEGDNRNPK-PRLRADRVN  267 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHh-cchHHHHHhhhccccccC-ccccchhee
Confidence            34689999999999998 555543 57899999999999998877654 122233444444433322 334555554

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=87.16  E-value=2.5  Score=35.47  Aligned_cols=93  Identities=12%  Similarity=-0.050  Sum_probs=57.6

Q ss_pred             CCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCC-ceeeEecCCCCC-CCCCCCcceEEeC
Q 029554           92 FPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFL-PLKESSLDLAISC  168 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-~~~~~~~d~~~l-~~~~~~fDlVis~  168 (191)
                      .-+|||.=+|+|.=+..++.. ....+|+.-|+|+..++..+++.+. ++... .+.+...|+..+ ......||+|=  
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~-N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID--  126 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLEL-NGLEDERIEVSNMDANVLLYSRQERFDVID--  126 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHH-CT-SGCCEEEEES-HHHHHCHSTT-EEEEE--
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhh-ccccCceEEEehhhHHHHhhhccccCCEEE--
Confidence            458999999999777766655 4457999999999999999998765 22222 466667775532 12356799984  


Q ss_pred             CcccCcCChHHHHHHHHhccC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLL  189 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lk  189 (191)
                        |.-...+..++....+.++
T Consensus       127 --lDPfGSp~pfldsA~~~v~  145 (377)
T PF02005_consen  127 --LDPFGSPAPFLDSALQAVK  145 (377)
T ss_dssp             --E--SS--HHHHHHHHHHEE
T ss_pred             --eCCCCCccHhHHHHHHHhh
Confidence              3333455666666665554

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=86.45  E-value=5.1  Score=32.70  Aligned_cols=43  Identities=14%  Similarity=0.118  Sum_probs=29.4

Q ss_pred             CCCeEEEEcCC-ccHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554           91 TFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (191)
Q Consensus        91 ~~~~VLDlGcG-~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~  133 (191)
                      ++.+||=.||| .|..+..+++.....+++++|.++.-++.+++
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~  212 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE  212 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence            57788888875 23344444444333479999999988888765

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=86.40  E-value=1.7  Score=31.14  Aligned_cols=38  Identities=8%  Similarity=0.064  Sum_probs=24.7

Q ss_pred             EEcCCcc--HHHHHHh--hcCCCceEEEEECChhHHHHHHHh
Q 029554           97 CLGGSLE--AVRRLLR--GRGGIEKLIMMDTSYDMLKLCKDA  134 (191)
Q Consensus        97 DlGcG~G--~~~~~l~--~~~~~~~v~~vD~s~~~l~~a~~~  134 (191)
                      |||++.|  .....+.  ..++..+|+++|+++..++..++.
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  5555442  345668999999999998888777

; PDB: 2PY6_A.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=86.32  E-value=2.5  Score=35.57  Aligned_cols=45  Identities=9%  Similarity=-0.092  Sum_probs=35.9

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhh
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~  135 (191)
                      ..++.+||-|.+|.......|...-  .+|++||+|+..+...+=+.
T Consensus        33 i~~~d~vl~ItSaG~N~L~yL~~~P--~~I~aVDlNp~Q~aLleLKl   77 (380)
T PF11899_consen   33 IGPDDRVLTITSAGCNALDYLLAGP--KRIHAVDLNPAQNALLELKL   77 (380)
T ss_pred             CCCCCeEEEEccCCchHHHHHhcCC--ceEEEEeCCHHHHHHHHHHH
Confidence            4578899999988887777776643  89999999999877776544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=86.25  E-value=3.7  Score=37.03  Aligned_cols=102  Identities=12%  Similarity=-0.021  Sum_probs=56.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhc-------CC-----CceEEEEECCh---hHHHHHHHh-----------hhhccC---
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGR-------GG-----IEKLIMMDTSY---DMLKLCKDA-----------QQDAHN---  140 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~-------~~-----~~~v~~vD~s~---~~l~~a~~~-----------~~~~~~---  140 (191)
                      ...-+|||+|-|+|.+.....+.       .+     .-+++.+|..+   ..+..+.+.           ...|..   
T Consensus        56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  135 (662)
T PRK01747         56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP  135 (662)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence            34468999999999875544321       12     34899999644   333222211           111111   


Q ss_pred             ---------CCCceeeEecCCCC-CCCCCCCcceEEeC-CcccCcCCh--HHHHHHHHhccCCC
Q 029554          141 ---------DNIETCFVVGDEEF-LPLKESSLDLAISC-LGLHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       141 ---------~~~~~~~~~~d~~~-l~~~~~~fDlVis~-~~l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                               .........+|+.+ ++--...||+|+.- ++-..-++.  ..++.++.++++||
T Consensus       136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~  199 (662)
T PRK01747        136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPG  199 (662)
T ss_pred             CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCC
Confidence                     11234455567542 22122569999863 333333333  57899999999986

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=85.94  E-value=3.1  Score=36.34  Aligned_cols=90  Identities=10%  Similarity=0.012  Sum_probs=55.2

Q ss_pred             CCCeEEEEcCCcc-HHHHHHhh-cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC--------------
Q 029554           91 TFPTALCLGGSLE-AVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF--------------  154 (191)
Q Consensus        91 ~~~~VLDlGcG~G-~~~~~l~~-~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~--------------  154 (191)
                      ++.+||=+|||.= .....++. .+  ..|+++|.++.-++.+++--         ..++..|..+              
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~lG---------a~~v~v~~~e~g~~~~gYa~~~s~  231 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQSMG---------AEFLELDFKEEGGSGDGYAKVMSE  231 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcC---------CeEEeccccccccccccceeecCH
Confidence            5679999999865 33333333 34  67999999999877776521         1111111100              


Q ss_pred             ---------CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          155 ---------LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 ---------l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                               ++-.-..+|+||.+.-+.-.+.+.-+.+++.+.+|||
T Consensus       232 ~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG  277 (511)
T TIGR00561       232 EFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG  277 (511)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC
Confidence                     1101246999988775555445555677778888876

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.84  E-value=5.2  Score=32.40  Aligned_cols=78  Identities=15%  Similarity=0.068  Sum_probs=55.9

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+..||=-|.|.|   .++..+++++  +.++..|+++...++..+..+.  .  .++.....|+....          -
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg--~~~vl~Din~~~~~etv~~~~~--~--g~~~~y~cdis~~eei~~~a~~Vk~  110 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRG--AKLVLWDINKQGNEETVKEIRK--I--GEAKAYTCDISDREEIYRLAKKVKK  110 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhC--CeEEEEeccccchHHHHHHHHh--c--CceeEEEecCCCHHHHHHHHHHHHH
Confidence            4667888888877   3456677877  7899999999888777776653  1  25666667765432          2


Q ss_pred             CCCCcceEEeCCcccCc
Q 029554          158 KESSLDLAISCLGLHWT  174 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~  174 (191)
                      +-|..|++|.|.++-+.
T Consensus       111 e~G~V~ILVNNAGI~~~  127 (300)
T KOG1201|consen  111 EVGDVDILVNNAGIVTG  127 (300)
T ss_pred             hcCCceEEEeccccccC
Confidence            34789999999887654

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=84.97  E-value=10  Score=30.40  Aligned_cols=43  Identities=23%  Similarity=0.176  Sum_probs=30.5

Q ss_pred             cCCCeEEEEcCC-ccHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554           90 KTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (191)
Q Consensus        90 ~~~~~VLDlGcG-~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~  133 (191)
                      .++.+||..|+| .|..+..+++.. ..++++++.++...+.+++
T Consensus       164 ~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~  207 (338)
T cd08254         164 KPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE  207 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH
Confidence            356788888876 366666665543 2679999999988877754

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.91  E-value=2.3  Score=34.88  Aligned_cols=45  Identities=22%  Similarity=0.268  Sum_probs=37.0

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~  133 (191)
                      -..+.+||-+|+|+ |..+...++.....+|+.+|+++.-++.|++
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            34678999999996 4555566666667899999999999999987

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=84.84  E-value=3.3  Score=30.05  Aligned_cols=34  Identities=18%  Similarity=0.018  Sum_probs=23.9

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTS  124 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s  124 (191)
                      ..+-|||+|=|+|..=-+|.+.+|..+++++|-.
T Consensus        28 ~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~   61 (160)
T PF12692_consen   28 LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA   61 (160)
T ss_dssp             --S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred             CCCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence            3467999999999999999999999999999964

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=83.96  E-value=5.8  Score=31.76  Aligned_cols=68  Identities=19%  Similarity=0.137  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC-CCCCCCCCCCcceEEeCC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD-EEFLPLKESSLDLAISCL  169 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d-~~~l~~~~~~fDlVis~~  169 (191)
                      ++...+|+|+.+|.++-.|.+++  -.|+++|-.+ |.+...        ....++.+..| +..-| .....|..+|..
T Consensus       211 ~~M~avDLGAcPGGWTyqLVkr~--m~V~aVDng~-ma~sL~--------dtg~v~h~r~DGfk~~P-~r~~idWmVCDm  278 (358)
T COG2933         211 PGMWAVDLGACPGGWTYQLVKRN--MRVYAVDNGP-MAQSLM--------DTGQVTHLREDGFKFRP-TRSNIDWMVCDM  278 (358)
T ss_pred             CCceeeecccCCCccchhhhhcc--eEEEEeccch-hhhhhh--------cccceeeeeccCccccc-CCCCCceEEeeh
Confidence            67788999999999999999987  8899999443 333221        22235555555 33333 346688888765


Q ss_pred             c
Q 029554          170 G  170 (191)
Q Consensus       170 ~  170 (191)
                      +
T Consensus       279 V  279 (358)
T COG2933         279 V  279 (358)
T ss_pred             h
Confidence            5

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=83.64  E-value=6.6  Score=27.25  Aligned_cols=79  Identities=20%  Similarity=0.175  Sum_probs=50.9

Q ss_pred             CCeEEEEcCCcc-HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC-CCCcceEEeCC
Q 029554           92 FPTALCLGGSLE-AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK-ESSLDLAISCL  169 (191)
Q Consensus        92 ~~~VLDlGcG~G-~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~-~~~fDlVis~~  169 (191)
                      .++|+|+|-|-= ..+..|++++  ..++++|+++.   .+          ...+.+...|+..-... -...|+|.|  
T Consensus        14 ~gkVvEVGiG~~~~VA~~L~e~g--~dv~atDI~~~---~a----------~~g~~~v~DDitnP~~~iY~~A~lIYS--   76 (129)
T COG1255          14 RGKVVEVGIGFFLDVAKRLAERG--FDVLATDINEK---TA----------PEGLRFVVDDITNPNISIYEGADLIYS--   76 (129)
T ss_pred             CCcEEEEccchHHHHHHHHHHcC--CcEEEEecccc---cC----------cccceEEEccCCCccHHHhhCccceee--
Confidence            448999998865 4466778877  88999999986   11          12367777776532211 124678876  


Q ss_pred             cccCcCChHHHHHHHHhcc
Q 029554          170 GLHWTNDLPGAMIQVSIFL  188 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~L  188 (191)
                       +.--+++...+-.+.+.+
T Consensus        77 -iRpppEl~~~ildva~aV   94 (129)
T COG1255          77 -IRPPPELQSAILDVAKAV   94 (129)
T ss_pred             -cCCCHHHHHHHHHHHHhh
Confidence             444556666666666554

>PRK08339 short chain dehydrogenase; Provisional

Probab=83.44  E-value=10  Score=29.64  Aligned_cols=78  Identities=18%  Similarity=0.231  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---------CC
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---------LK  158 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---------~~  158 (191)
                      .+.++|-.|++.|   .+...|.+.+  .+|+.++.++.-++...+....  ....++.++..|+....         ..
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~i~~~~~~~~~   82 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAG--ADVILLSRNEENLKKAREKIKS--ESNVDVSYIVADLTKREDLERTVKELKN   82 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh--hcCCceEEEEecCCCHHHHHHHHHHHHh
Confidence            3456788887655   3344556666  7899999988766665554432  11234667777765421         01


Q ss_pred             CCCcceEEeCCccc
Q 029554          159 ESSLDLAISCLGLH  172 (191)
Q Consensus       159 ~~~fDlVis~~~l~  172 (191)
                      -+..|+++.+.+..
T Consensus        83 ~g~iD~lv~nag~~   96 (263)
T PRK08339         83 IGEPDIFFFSTGGP   96 (263)
T ss_pred             hCCCcEEEECCCCC
Confidence            25689999887653

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=83.42  E-value=0.97  Score=37.35  Aligned_cols=90  Identities=12%  Similarity=-0.022  Sum_probs=58.8

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHH-------HhhhhccCCCCceeeEecCCCCCCC-CCC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK-------DAQQDAHNDNIETCFVVGDEEFLPL-KES  160 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~-------~~~~~~~~~~~~~~~~~~d~~~l~~-~~~  160 (191)
                      -.++.-|+|==.|||.+....+..|  +.|+|.||+-.|+...+       .++++-+....-+.+...|...-|. ..-
T Consensus       206 v~pGdivyDPFVGTGslLvsaa~FG--a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~  283 (421)
T KOG2671|consen  206 VKPGDIVYDPFVGTGSLLVSAAHFG--AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNL  283 (421)
T ss_pred             cCCCCEEecCccccCceeeehhhhc--ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcc
Confidence            4578899999999999988888877  89999999999886321       2222111112235556667654432 345


Q ss_pred             CcceEEeCCcccCcCChHHHHHHHHhcc
Q 029554          161 SLDLAISCLGLHWTNDLPGAMIQVSIFL  188 (191)
Q Consensus       161 ~fDlVis~~~l~~~~d~~~~l~~i~r~L  188 (191)
                      .||.|||        ||+--+++-.+.+
T Consensus       284 ~fDaIvc--------DPPYGVRe~~rk~  303 (421)
T KOG2671|consen  284 KFDAIVC--------DPPYGVREGARKT  303 (421)
T ss_pred             eeeEEEe--------CCCcchhhhhhhh
Confidence            7999998        5555555544443

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=83.22  E-value=16  Score=27.05  Aligned_cols=84  Identities=14%  Similarity=0.076  Sum_probs=45.8

Q ss_pred             CCC-eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCC-CCceeeEecCCCCC---------CCCC
Q 029554           91 TFP-TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND-NIETCFVVGDEEFL---------PLKE  159 (191)
Q Consensus        91 ~~~-~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~d~~~l---------~~~~  159 (191)
                      ++. .|+.+|||.-.....+....+...++-+|.-+ +++.-++.+...... ..+.+++..|+...         .+..
T Consensus        77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~  155 (183)
T PF04072_consen   77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPE-VIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDP  155 (183)
T ss_dssp             TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HH-HHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-T
T ss_pred             CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHH-HHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCC
Confidence            444 79999999988877777654345666666533 444444444331000 12356688887742         1334


Q ss_pred             CCcceEEeCCcccCcC
Q 029554          160 SSLDLAISCLGLHWTN  175 (191)
Q Consensus       160 ~~fDlVis~~~l~~~~  175 (191)
                      +.--++++-.++.|+.
T Consensus       156 ~~ptl~i~Egvl~Yl~  171 (183)
T PF04072_consen  156 DRPTLFIAEGVLMYLS  171 (183)
T ss_dssp             TSEEEEEEESSGGGS-
T ss_pred             CCCeEEEEcchhhcCC
Confidence            4556778888899984

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=83.12  E-value=1.3  Score=37.49  Aligned_cols=52  Identities=13%  Similarity=0.002  Sum_probs=44.0

Q ss_pred             HHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh
Q 029554           84 RLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD  137 (191)
Q Consensus        84 ~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~  137 (191)
                      ++.....++..|-|+-||-|.+...+...+  +.|++.|.++++++..+.....
T Consensus       242 rlsg~fk~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~l  293 (495)
T KOG2078|consen  242 RLSGLFKPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKL  293 (495)
T ss_pred             HHhhccCCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhccc
Confidence            333345688899999999999999998877  9999999999999999887653

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=82.66  E-value=3.5  Score=31.42  Aligned_cols=91  Identities=12%  Similarity=0.073  Sum_probs=54.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhh----cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-------CCC
Q 029554           91 TFPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-------LKE  159 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~----~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-------~~~  159 (191)
                      .+..|+|+|.--|..+...+.    .|...+|+++|++-.-++.+...       ...+.|+.++-....       .+.
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-------~p~i~f~egss~dpai~eqi~~~~~  141 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-------VPDILFIEGSSTDPAIAEQIRRLKN  141 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-------CCCeEEEeCCCCCHHHHHHHHHHhc
Confidence            456799999988877766654    35567899999998766555332       334788887643321       222


Q ss_pred             CCcceEEeCCcccCcCChHHHHHHHHhcc
Q 029554          160 SSLDLAISCLGLHWTNDLPGAMIQVSIFL  188 (191)
Q Consensus       160 ~~fDlVis~~~l~~~~d~~~~l~~i~r~L  188 (191)
                      +.--+.+|-.+-|+.+..-+.|+-...+|
T Consensus       142 ~y~kIfvilDsdHs~~hvLAel~~~~pll  170 (237)
T COG3510         142 EYPKIFVILDSDHSMEHVLAELKLLAPLL  170 (237)
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHhhhHh
Confidence            22234445555665544444444444444

>PRK05867 short chain dehydrogenase; Provisional

Probab=82.31  E-value=12  Score=28.80  Aligned_cols=78  Identities=19%  Similarity=0.134  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----  157 (191)
                      .+.++|-.|++.|   .+...|.+.+  .+|+.++.++.-++...+....   ...++.++..|+....     +     
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAG--AQVAIAARHLDALEKLADEIGT---SGGKVVPVCCDVSQHQQVTSMLDQVTA   82 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHh---cCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            3567888887655   3344555656  7899999988766665554432   2234666777765321     0     


Q ss_pred             CCCCcceEEeCCcccC
Q 029554          158 KESSLDLAISCLGLHW  173 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~  173 (191)
                      .-+..|.+|.+.+...
T Consensus        83 ~~g~id~lv~~ag~~~   98 (253)
T PRK05867         83 ELGGIDIAVCNAGIIT   98 (253)
T ss_pred             HhCCCCEEEECCCCCC
Confidence            1157899999877654

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=82.20  E-value=1.9  Score=38.29  Aligned_cols=37  Identities=8%  Similarity=-0.129  Sum_probs=30.0

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECCh
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSY  125 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~  125 (191)
                      ..+...|||+||.+|.|.+...+..| ..-|+|+|+-|
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p   79 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP   79 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence            34677899999999999998877654 36799999876

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=82.18  E-value=6.2  Score=31.44  Aligned_cols=81  Identities=16%  Similarity=0.031  Sum_probs=45.1

Q ss_pred             eEEEEcCCc--cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcc
Q 029554           94 TALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGL  171 (191)
Q Consensus        94 ~VLDlGcG~--G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l  171 (191)
                      +|.=||+|.  |.++..|.+.+  .+|+++|.++..++.+.+..     .   +.....+.+.    -...|+|+...-.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g--~~V~~~d~~~~~~~~a~~~g-----~---~~~~~~~~~~----~~~aDlVilavp~   67 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLG--HTVYGVSRRESTCERAIERG-----L---VDEASTDLSL----LKDCDLVILALPI   67 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCC-----C---cccccCCHhH----hcCCCEEEEcCCH
Confidence            355677763  45556666655  68999999998877765431     0   1111111111    1357888876543


Q ss_pred             cCcCChHHHHHHHHhccCCC
Q 029554          172 HWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       172 ~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ..+   ..++.++...++|+
T Consensus        68 ~~~---~~~~~~l~~~l~~~   84 (279)
T PRK07417         68 GLL---LPPSEQLIPALPPE   84 (279)
T ss_pred             HHH---HHHHHHHHHhCCCC
Confidence            322   34556666656553

>KOG2811 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.57  E-value=5.1  Score=33.46  Aligned_cols=36  Identities=11%  Similarity=0.142  Sum_probs=27.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEE---EECChh
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIM---MDTSYD  126 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~---vD~s~~  126 (191)
                      +....+|+|||-|.++.++....+...++-   +|-...
T Consensus       182 ~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~  220 (420)
T KOG2811|consen  182 PSSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSS  220 (420)
T ss_pred             CcceEEEecCCchHHHHHHHHHhccccEEEEEeecccch
Confidence            445789999999999999987766666665   665443

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=81.41  E-value=6.3  Score=32.88  Aligned_cols=48  Identities=10%  Similarity=-0.073  Sum_probs=37.0

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCC----ceEEEEECChhHHHHHHHhhh
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGI----EKLIMMDTSYDMLKLCKDAQQ  136 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~----~~v~~vD~s~~~l~~a~~~~~  136 (191)
                      .+|+.+|||+++.+|.=+..|.+....    ..|++-|.++.-+........
T Consensus       153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~  204 (375)
T KOG2198|consen  153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLK  204 (375)
T ss_pred             cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHh
Confidence            568899999999999888777665422    289999999987777666553

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=81.32  E-value=1.2  Score=34.46  Aligned_cols=56  Identities=13%  Similarity=-0.050  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhh
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~  135 (191)
                      .+..++.+.  +.++...+|.--|.|..+..+.+..+...++++|-+|-....+....
T Consensus        32 ~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s   87 (303)
T KOG2782|consen   32 LDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHS   87 (303)
T ss_pred             hhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhh
Confidence            445555555  55788899999999999999988888888999999998777765443

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=80.49  E-value=27  Score=27.88  Aligned_cols=81  Identities=23%  Similarity=0.252  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--------CC-
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LK-  158 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--------~~-  158 (191)
                      ...++|=-|+-.|   .++..|++++  .+++.+--+++-++..++..+.  .....+.++..|+....        .. 
T Consensus         5 ~~~~~lITGASsGIG~~~A~~lA~~g--~~liLvaR~~~kL~~la~~l~~--~~~v~v~vi~~DLs~~~~~~~l~~~l~~   80 (265)
T COG0300           5 KGKTALITGASSGIGAELAKQLARRG--YNLILVARREDKLEALAKELED--KTGVEVEVIPADLSDPEALERLEDELKE   80 (265)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCcHHHHHHHHHHHHH--hhCceEEEEECcCCChhHHHHHHHHHHh
Confidence            4557888887666   4456677777  8999999999988888887764  23456788888876542        11 


Q ss_pred             -CCCcceEEeCCcccCcC
Q 029554          159 -ESSLDLAISCLGLHWTN  175 (191)
Q Consensus       159 -~~~fDlVis~~~l~~~~  175 (191)
                       ...+|+.|.|.++-+..
T Consensus        81 ~~~~IdvLVNNAG~g~~g   98 (265)
T COG0300          81 RGGPIDVLVNNAGFGTFG   98 (265)
T ss_pred             cCCcccEEEECCCcCCcc
Confidence             24799999999887654

>PRK05854 short chain dehydrogenase; Provisional

Probab=80.45  E-value=15  Score=29.65  Aligned_cols=78  Identities=18%  Similarity=0.121  Sum_probs=48.2

Q ss_pred             CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CC
Q 029554           92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LK  158 (191)
Q Consensus        92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~  158 (191)
                      +.++|=.|++.|   .....|++.+  .+|+.++-++.-.+.+.+..... ....++.++..|+....          -.
T Consensus        14 gk~~lITGas~GIG~~~a~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~-~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~   90 (313)
T PRK05854         14 GKRAVVTGASDGLGLGLARRLAAAG--AEVILPVRNRAKGEAAVAAIRTA-VPDAKLSLRALDLSSLASVAALGEQLRAE   90 (313)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            457787787655   2344455556  78999998877655554444321 12235777888876532          11


Q ss_pred             CCCcceEEeCCccc
Q 029554          159 ESSLDLAISCLGLH  172 (191)
Q Consensus       159 ~~~fDlVis~~~l~  172 (191)
                      .+..|++|.|.+..
T Consensus        91 ~~~iD~li~nAG~~  104 (313)
T PRK05854         91 GRPIHLLINNAGVM  104 (313)
T ss_pred             CCCccEEEECCccc
Confidence            25689999987654

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=80.44  E-value=33  Score=28.76  Aligned_cols=96  Identities=15%  Similarity=0.054  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHH----HHHhhcC---CCceEEEEEC----ChhHHHHHHHhhhhcc-CCCCce
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVR----RLLRGRG---GIEKLIMMDT----SYDMLKLCKDAQQDAH-NDNIET  145 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~----~~l~~~~---~~~~v~~vD~----s~~~l~~a~~~~~~~~-~~~~~~  145 (191)
                      ...+++.+.  ....-.|+|+|.|.|.-.    +.|+.+.   |.-++|+++.    +..-++...++..+.. ..+...
T Consensus        99 NqaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~f  176 (374)
T PF03514_consen   99 NQAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPF  176 (374)
T ss_pred             hHHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccE
Confidence            345555555  334557999999999443    3444431   4568999999    6777777766654311 123344


Q ss_pred             eeEec---CCCCC-----CCCCCCcceEEeCCcccCcC
Q 029554          146 CFVVG---DEEFL-----PLKESSLDLAISCLGLHWTN  175 (191)
Q Consensus       146 ~~~~~---d~~~l-----~~~~~~fDlVis~~~l~~~~  175 (191)
                      +|...   ..+.+     ...++..=+|-|.+.|||+.
T Consensus       177 ef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~  214 (374)
T PF03514_consen  177 EFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLL  214 (374)
T ss_pred             EEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhc
Confidence            44442   23332     23334443444566788875

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PRK06194 hypothetical protein; Provisional

Probab=80.36  E-value=25  Score=27.56  Aligned_cols=76  Identities=17%  Similarity=0.108  Sum_probs=45.9

Q ss_pred             CCeEEEEcCCccHHHH----HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554           92 FPTALCLGGSLEAVRR----LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----  157 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~----~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----  157 (191)
                      +.+||=.|++ |.++.    .|.+.+  .+|+.+|.++..++...+....   ...++.++.+|+....     +     
T Consensus         6 ~k~vlVtGas-ggIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~~~   79 (287)
T PRK06194          6 GKVAVITGAA-SGFGLAFARIGAALG--MKLVLADVQQDALDRAVAELRA---QGAEVLGVRTDVSDAAQVEALADAALE   79 (287)
T ss_pred             CCEEEEeCCc-cHHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHHHHh---cCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            3568877754 43333    445555  7899999887766555444322   2334677778865421     0     


Q ss_pred             CCCCcceEEeCCcccC
Q 029554          158 KESSLDLAISCLGLHW  173 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~  173 (191)
                      ..+..|+|+.+.+...
T Consensus        80 ~~g~id~vi~~Ag~~~   95 (287)
T PRK06194         80 RFGAVHLLFNNAGVGA   95 (287)
T ss_pred             HcCCCCEEEECCCCCC
Confidence            1145899999887643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	191
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	9e-10
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	8e-09
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	5e-06
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	9e-06
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	2e-05
3i9f_A	170	Putative type 11 methyltransferase; structural gen	2e-05
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	3e-05
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	3e-05
1xxl_A	239	YCGJ protein; structural genomics, protein structu	4e-05
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	4e-05
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	6e-05
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	6e-05
3ege_A	261	Putative methyltransferase from antibiotic biosyn	1e-04
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	6e-04
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	6e-04

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 55.3 bits (133), Expect = 9e-10
 Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 107 RLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAI 166
                 G  +K++ +D S  ML     A++   +  +   +     E + ++  + ++ +
Sbjct: 60  IYAAEHGA-KKVLGIDLSERMLTE---AKRKTTSPVVC--YEQKAIEDIAIEPDAYNVVL 113

Query: 167 SCLGLHWTNDLPGAMIQVSIFLLPD 191
           S L LH+         +V I L   
Sbjct: 114 SSLALHYIASFDDICKKVYINLKSS 138

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 52.5 bits (126), Expect = 8e-09
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 107 RLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAI 166
           R     G    ++ +D S  ML     A+    +  I   +   D + L L + S DLA 
Sbjct: 59  RWAHEHGA-SYVLGLDLSEKMLAR---ARAAGPDTGIT--YERADLDKLHLPQDSFDLAY 112

Query: 167 SCLGLHWTNDLPGAM 181
           S L LH+  D+    
Sbjct: 113 SSLALHYVEDVARLF 127

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 14/126 (11%)

Query: 61  DRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGG-----SLEAVRRLLRGRGGI 115
            +   L  P+   +    E +L       K   T L +G           + +  G  G 
Sbjct: 10  SKIKKLDDPSRLELFDP-EKVLKEFGL--KEGMTVLDVGTGAGFYLPYLSKMV--GEKG- 63

Query: 116 EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTN 175
            K+  +D   +M+    +        N+E   +  +E  +PL ++++D        H  +
Sbjct: 64  -KVYAIDVQEEMVNYAWEKVNKLGLKNVE--VLKSEENKIPLPDNTVDFIFMAFTFHELS 120

Query: 176 DLPGAM 181
           +    +
Sbjct: 121 EPLKFL 126

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 4e-07
 Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 22/159 (13%)

Query: 52  DRHLKRKQRDRAAWLTRPNDSFVDAVAE---NLLDRL-----EDCRKTFPTALCLGGSLE 103
              ++ K   +  WL   N +  + V E    LL ++          +    L +     
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 104 AVRRLLRGRGGIEKLIMMDTSYD--MLKL----CK------DAQQDAHNDNIETCFVVGD 151
            +RRLL+ +     L+++    +          CK        Q         T  +  D
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 152 EEFLPL-KESSLDLAISCLGLHWTNDLPGAMIQVSIFLL 189
              + L  +    L +  L      DLP  ++  +   L
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCR-PQDLPREVLTTNPRRL 330

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 93  PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE 152
           P  L LG     +   L  +       ++D S  ML++ K   +   N  ++  ++  D 
Sbjct: 46  PDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAK--NRFRGNLKVK--YIEADY 101

Query: 153 EFLPLKESSLDLAISCLGLHWTND 176
                +E   D+ +S L +H   D
Sbjct: 102 SKYDFEEKY-DMVVSALSIHHLED 124

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 43.7 bits (103), Expect = 9e-06
 Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 16/137 (11%)

Query: 58  KQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLG---GSLEAVRRLLRGRGG 114
                +A      +      A +LL ++    +       LG   G+      LL  R G
Sbjct: 2   GHMAWSAQQYLKFEDERTRPARDLLAQVPL--ERVLNGYDLGCGPGNST---ELLTDRYG 56

Query: 115 IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWT 174
           +  +  +D+  DML+   D   + +       F   D           DL  +     W 
Sbjct: 57  VNVITGIDSDDDMLEKAADRLPNTN-------FGKADLATWKP-AQKADLLYANAVFQWV 108

Query: 175 NDLPGAMIQVSIFLLPD 191
            D    + Q+   L   
Sbjct: 109 PDHLAVLSQLMDQLESG 125

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 137 DAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTN 175
           D  + +      V D   +PL++ S+D+A+ CL L  TN
Sbjct: 93  DLASLDPR--VTVCDMAQVPLEDESVDVAVFCLSLMGTN 129

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 12/75 (16%)

Query: 107 RLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAI 166
           + L       KL  +D +   LK  K+          +   V+   +   + ++S+D  +
Sbjct: 33  KYLLEFAT--KLYCIDINVIALKEVKE--------KFD--SVITLSDPKEIPDNSVDFIL 80

Query: 167 SCLGLHWTNDLPGAM 181
                H  +D    +
Sbjct: 81  FANSFHDMDDKQHVI 95

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 122 DTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAM 181
           D S  M++     ++     ++   F+ GD   LP +    +  ++   L WT +   A+
Sbjct: 82  DISEVMIQK---GKERGEGPDLS--FIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRAL 136

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 107 RLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAI 166
             L  RG   + I +D    ML++    +Q     + +   V  D   +PL + S+   I
Sbjct: 55  LPLIARGY--RYIALDADAAMLEV---FRQKIAGVDRKVQVVQADARAIPLPDESVHGVI 109

Query: 167 SCLGLHWTNDLPGAM 181
                H   D P  +
Sbjct: 110 VVHLWHLVPDWPKVL 124

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 107 RLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAI 166
                     + I +D + +M+++     Q+   +N+   F  G  E LP  + S D+  
Sbjct: 37  LAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVR--FQQGTAESLPFPDDSFDIIT 92

Query: 167 SCLGLHWTNDLPGAM 181
                H  +D+  A+
Sbjct: 93  CRYAAHHFSDVRKAV 107

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 107 RLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAI 166
                     K++  D + D+LK+ +   +   +  +E  +V GD E +P  +    +  
Sbjct: 53  NAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVE--YVQGDAEQMPFTDERFHIVT 108

Query: 167 SCLGLHWTNDLPGAM 181
             +  H   +    +
Sbjct: 109 CRIAAHHFPNPASFV 123

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 18/122 (14%)

Query: 72  SFVDAVAENLLDRLEDCRKTFPTALCLG---GSLEAVRRLLRGRGGIEKLIMMDTSYDML 128
           SFV    E+LL  L    +     L LG   G L      +   G   +++  D +  M+
Sbjct: 40  SFVWQYGEDLLQLLNP--QPGEFILDLGCGTGQLTE---KIAQSGA--EVLGTDNAATMI 92

Query: 129 KLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFL 188
           +  +      H       F V D     + +  LD   S   LHW  +   A+  +   L
Sbjct: 93  EKARQNYPHLH-------FDVADARNFRV-DKPLDAVFSNAMLHWVKEPEAAIASIHQAL 144

Query: 189 LP 190
             
Sbjct: 145 KS 146

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 2/75 (2%)

Query: 107 RLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAI 166
            +L       ++  +D S + L+  ++  +     N++  F+  +   LP ++SS D   
Sbjct: 53  VILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVK--FLQANIFSLPFEDSSFDHIF 110

Query: 167 SCLGLHWTNDLPGAM 181
            C  L        A+
Sbjct: 111 VCFVLEHLQSPEEAL 125

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 122 DTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAM 181
           + S  M +          +  +E  +  G  E L L + S+D  IS L +H  + L  + 
Sbjct: 63  EPSIVMRQQAVV------HPQVE--WFTGYAENLALPDKSVDGVISILAIHHFSHLEKSF 114

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 16/119 (13%), Positives = 39/119 (32%), Gaps = 9/119 (7%)

Query: 81  LLDRLED-CRKTFPTALCLG-GSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA 138
               +++         + +G G   A  ++ +     E++I  D S  M+K  +  ++ +
Sbjct: 25  FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS 84

Query: 139 HNDNIETCFVVGDEEFL------PLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191
            +      F +   +         + +  +D+  +    HW  D           L  D
Sbjct: 85  PDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKD 142

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 121 MDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGL-HWTN-DLP 178
           +D S DM++    A++ A +      F+VGD   L  ++ + D  I    + H+   +L 
Sbjct: 66  VDISEDMIRK---AREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELN 122

Query: 179 GAM 181
              
Sbjct: 123 QVF 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.85
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.82
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.81
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.81
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.81
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.79
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.79
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.79
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.79
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.78
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.78
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.78
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.78
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.78
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.78
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.77
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.77
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.77
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.76
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.76
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.76
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.76
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.76
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.76
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.76
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.76
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.75
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.75
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.75
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.75
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.75
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.75
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.75
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.74
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.74
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.74
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.73
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.73
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.73
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.72
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.72
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.72
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.72
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.71
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.71
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.71
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.71
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.71
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.71
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.71
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.71
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.7
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.7
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.7
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.69
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.69
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.69
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.69
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.68
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.68
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.67
3ocj_A	305	Putative exported protein; structural genomics, PS	99.67
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.67
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.67
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.67
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.67
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.66
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.66
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.66
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.66
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.66
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.66
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.65
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.65
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.65
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.65
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.64
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.64
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.64
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.64
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.64
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.63
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.63
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.63
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.62
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.62
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.62
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.62
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.62
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.62
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.62
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.61
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.61
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.61
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.61
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.6
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.6
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.6
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.59
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.59
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.59
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.59
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.59
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.58
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.58
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.58
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.58
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.58
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.57
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.57
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.57
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.56
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.56
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.56
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.56
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.56
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.55
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.55
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.55
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.55
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.55
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.54
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.54
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.54
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.54
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.54
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.54
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.54
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.54
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.54
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.54
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.53
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.53
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.53
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.53
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.53
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.53
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.53
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.52
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.51
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.5
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.5
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.5
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.5
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.5
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.5
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.49
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.49
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.49
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.49
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.49
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.49
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.48
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.48
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.48
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.48
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.48
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.48
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.47
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.47
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.47
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.47
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.47
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.47
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.47
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.47
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.46
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.46
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.46
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.46
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.46
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.46
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.46
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.45
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.45
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.45
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.44
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.44
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.43
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.43
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.43
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.42
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.42
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.42
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.42
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.42
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.41
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.41
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.41
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.4
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.4
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.4
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.4
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.4
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.4
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.4
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.4
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.4
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.4
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.39
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.39
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.39
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.38
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.38
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.38
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.37
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.36
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.36
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.36
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.36
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.36
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.36
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.35
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.35
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.34
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.34
2o07_A	304	Spermidine synthase; structural genomics, structur	99.34
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.33
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.33
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.32
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.32
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.32
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.32
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.32
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.31
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.31
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.31
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.3
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.3
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.28
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.27
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.27
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.26
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.24
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.24
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.24
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.23
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.22
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.21
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.15
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.15
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.15
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.14
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.12
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.12
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.1
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.1
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.09
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.08
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.08
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.06
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.06
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.05
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.05
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.05
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.0
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	99.0
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.97
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.94
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.93
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.93
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.92
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.91
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.88
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.85
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.83
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.82
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.75
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.74
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.73
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.68
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.68
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.65
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.64
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.64
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.6
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.58
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.55
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.54
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.51
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.48
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.45
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.44
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.43
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.41
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.29
3lkd_A	542	Type I restriction-modification system methyltrans	98.23
3khk_A	544	Type I restriction-modification system methylation	98.13
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.02
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.01
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.95
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.9
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.78
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.78
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.78
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.74
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.74
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.64
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.43
3ufb_A	530	Type I restriction-modification system methyltran	97.38
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.13
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.7
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.04
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	95.9
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	95.65
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.62
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	95.61
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	95.16
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.06
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.77
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	93.7
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	93.66
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	93.65
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	93.56
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	93.51
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	93.38
2oo3_A	283	Protein involved in catabolism of external DNA; st	93.17
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	92.93
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	92.92
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	91.83
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	91.54
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	91.07
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	90.47
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	90.34
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	90.17
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	90.04
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	90.0
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	89.85
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	89.38
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	89.31
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	89.08
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	89.06
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	88.95
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	88.88
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	88.55
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	88.54
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	88.48
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	88.35
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	88.23
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	88.23
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	88.08
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	88.05
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	88.01
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	87.95
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	87.92
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	87.76
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	87.74
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	87.57
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	87.56
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	87.4
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	87.39
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	87.31
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	87.18
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	87.08
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	87.03
3me5_A	482	Cytosine-specific methyltransferase; structural ge	86.85
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	86.78
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	86.73
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	86.34
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	86.2
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	86.19
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	86.05
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	85.85
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	85.83
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	85.74
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	85.49
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	85.21
3imf_A	257	Short chain dehydrogenase; structural genomics, in	85.17
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	85.12
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	85.09
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	84.78
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	84.68
3gms_A	340	Putative NADPH:quinone reductase; structural genom	84.65
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	84.61
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	84.59
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	84.5
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	84.2
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	84.19
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	84.19
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	84.12
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	84.07
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	84.04
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	83.9
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	83.74
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	83.55
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	83.52
3rih_A	293	Short chain dehydrogenase or reductase; structural	83.49
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	83.27
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	83.19
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	83.19
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	82.89
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	82.65
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	82.57
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	82.45
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	82.45
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	81.92
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	81.86
3cxt_A	291	Dehydrogenase with different specificities; rossma	81.68
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	81.67
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	81.54
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	81.01
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	80.89
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	80.65
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	80.44
3c85_A	183	Putative glutathione-regulated potassium-efflux S	80.24
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	80.11

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.85  E-value=1.2e-21  Score=153.77  Aligned_cols=120  Identities=18%  Similarity=0.136  Sum_probs=87.5

Q ss_pred             HHHHHhhhhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh
Q 029554           58 KQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD  137 (191)
Q Consensus        58 ~~~~~~a~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~  137 (191)
                      .+|+..+..|+....-..   ..+.+.+........+|||||||+|..+..|++.+  .+|+|+|+|+.|++.|++    
T Consensus         9 d~F~~~a~~Y~~~Rp~yp---~~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~----   79 (257)
T 4hg2_A            9 DHFTPVADAYRAFRPRYP---RALFRWLGEVAPARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALR----   79 (257)
T ss_dssp             -----------CCCCCCC---HHHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCC----
T ss_pred             HHHHHHHHHHHHHCCCcH---HHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhh----
Confidence            345666666766421110   12333333323345789999999999999999988  899999999999987642    


Q ss_pred             ccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          138 AHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       138 ~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                          ..++.+.++|.+.+++++++||+|++..++||+ |+..++.++.|+||||
T Consensus        80 ----~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpg  128 (257)
T 4hg2_A           80 ----HPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPG  128 (257)
T ss_dssp             ----CTTEEEEECCTTCCCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEE
T ss_pred             ----cCCceeehhhhhhhcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCC
Confidence                345899999999999999999999999999998 6889999999999996

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.82  E-value=8e-20  Score=142.77  Aligned_cols=107  Identities=16%  Similarity=0.196  Sum_probs=92.9

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK  158 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~  158 (191)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.+  .+|+++|+|+.|++.++++...  ....++.+.++|++.+|++
T Consensus        27 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~--~~~~~v~~~~~d~~~l~~~  100 (260)
T 1vl5_A           27 AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEG--NGHQQVEYVQGDAEQMPFT  100 (260)
T ss_dssp             HHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHH--TTCCSEEEEECCC-CCCSC
T ss_pred             HHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHh--cCCCceEEEEecHHhCCCC
Confidence            45555555  4477899999999999999999887  6999999999999999988754  2334689999999999999


Q ss_pred             CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++||+|+++.++||++|+..++.++.++||||
T Consensus       101 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg  133 (260)
T 1vl5_A          101 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG  133 (260)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             CCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999999986

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.81  E-value=7.5e-20  Score=142.63  Aligned_cols=98  Identities=22%  Similarity=0.273  Sum_probs=88.3

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..++.+|||+|||+|.++..+++.+  .+|+++|+|+.|++.++++..   ....++.+.++|.+.+++++++||+|+++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  111 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARG--YRYIALDADAAMLEVFRQKIA---GVDRKVQVVQADARAIPLPDESVHGVIVV  111 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTT--CEEEEEESCHHHHHHHHHHTT---TSCTTEEEEESCTTSCCSCTTCEEEEEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhh---ccCCceEEEEcccccCCCCCCCeeEEEEC
Confidence            3467799999999999999998876  899999999999999998862   24456999999999999888999999999


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .++||++|+..++.++.++||||
T Consensus       112 ~~l~~~~~~~~~l~~~~~~L~pg  134 (263)
T 2yqz_A          112 HLWHLVPDWPKVLAEAIRVLKPG  134 (263)
T ss_dssp             SCGGGCTTHHHHHHHHHHHEEEE
T ss_pred             CchhhcCCHHHHHHHHHHHCCCC
Confidence            99999999999999999999986

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.81  E-value=3e-19  Score=140.39  Aligned_cols=100  Identities=17%  Similarity=0.168  Sum_probs=85.1

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcC--CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAI  166 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~--~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVi  166 (191)
                      ..++.+|||||||+|..+..|++..  +..+|+|+|+|+.|++.|+++.... ....++.++++|+..+|++  +||+|+
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~-~~~~~v~~~~~D~~~~~~~--~~d~v~  144 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-KAPTPVDVIEGDIRDIAIE--NASMVV  144 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTS-CCSSCEEEEESCTTTCCCC--SEEEEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhh-ccCceEEEeeccccccccc--ccccce
Confidence            4578899999999999999998764  3569999999999999999987641 2345799999999988764  599999


Q ss_pred             eCCcccCcCCh--HHHHHHHHhccCCC
Q 029554          167 SCLGLHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      +++++||+++.  ..+++++.++||||
T Consensus       145 ~~~~l~~~~~~~~~~~l~~i~~~LkpG  171 (261)
T 4gek_A          145 LNFTLQFLEPSERQALLDKIYQGLNPG  171 (261)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             eeeeeeecCchhHhHHHHHHHHHcCCC
Confidence            99999999744  57899999999996

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.81  E-value=7.7e-19  Score=133.00  Aligned_cols=135  Identities=21%  Similarity=0.219  Sum_probs=104.5

Q ss_pred             cccCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHH
Q 029554           49 SIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDML  128 (191)
Q Consensus        49 ~~~d~~~~~~~~~~~a~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l  128 (191)
                      ..|+......+ +.....  ........+...++..+.  ..+. +|||+|||+|.++..+++. +..+++++|+|+.++
T Consensus         7 ~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~   79 (219)
T 3dlc_A            7 KKFDKKGAKNM-DEISKT--LFAPIYPIIAENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMN   79 (219)
T ss_dssp             CTTSHHHHHHH-HHHHHT--TTTTHHHHHHHHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHH
T ss_pred             hhhhhcchhhH-HHHHHH--hhccccHHHHHHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHH
Confidence            34555444333 333322  222345566666766655  2233 9999999999999999887 457999999999999


Q ss_pred             HHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          129 KLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       129 ~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +.++++.... ....++.+.++|+..+++++++||+|+++.+++|++++..++.++.++|+||
T Consensus        80 ~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg  141 (219)
T 3dlc_A           80 EIALKNIADA-NLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSG  141 (219)
T ss_dssp             HHHHHHHHHT-TCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHhc-cccCceEEEEcCHHHCCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCC
Confidence            9999987651 2234689999999999988899999999999999999999999999999986

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.79  E-value=4.4e-19  Score=138.96  Aligned_cols=119  Identities=15%  Similarity=0.118  Sum_probs=94.1

Q ss_pred             HHHhhhhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc
Q 029554           60 RDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH  139 (191)
Q Consensus        60 ~~~~a~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~  139 (191)
                      |+..+..|+........+...+...+.  ..++.+|||+|||+|.++..+++.+  .+|+|+|+|+.|++.++++.    
T Consensus         5 y~~~a~~y~~~~~~~~~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~----   76 (261)
T 3ege_A            5 YNSIGKQYSQTRVPDIRIVNAIINLLN--LPKGSVIADIGAGTGGYSVALANQG--LFVYAVEPSIVMRQQAVVHP----   76 (261)
T ss_dssp             --------CCSBCCCHHHHHHHHHHHC--CCTTCEEEEETCTTSHHHHHHHTTT--CEEEEECSCHHHHHSSCCCT----
T ss_pred             HHHHHHHHhhcccccHHHHHHHHHHhC--CCCCCEEEEEcCcccHHHHHHHhCC--CEEEEEeCCHHHHHHHHhcc----
Confidence            345555666654444456666666665  3577899999999999999999854  89999999999998774432    


Q ss_pred             CCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          140 NDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       140 ~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                          ++.++++|++.+++++++||+|+++.+++|++|+..+++++.++|| |
T Consensus        77 ----~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-g  123 (261)
T 3ege_A           77 ----QVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-D  123 (261)
T ss_dssp             ----TEEEECCCTTSCCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-S
T ss_pred             ----CCEEEECchhhCCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-C
Confidence                6899999999999988999999999999999999999999999999 5

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.79  E-value=1.7e-19  Score=140.42  Aligned_cols=119  Identities=20%  Similarity=0.157  Sum_probs=99.0

Q ss_pred             hhhhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC
Q 029554           63 AAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN  142 (191)
Q Consensus        63 ~a~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~  142 (191)
                      .+..|+.....+......++..+.  ..++.+|||+|||+|.++..+...+|..+|+++|+|+.|++.++++.       
T Consensus         7 ~~~~y~~~~~~~~~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-------   77 (259)
T 2p35_A            7 SAQQYLKFEDERTRPARDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-------   77 (259)
T ss_dssp             -CGGGBCCCCGGGHHHHHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------
Confidence            355667665555555666666554  34677999999999999999988866689999999999999998763       


Q ss_pred             CceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          143 IETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       143 ~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .++.+.++|++.++ ++++||+|+++.++||++|+..++.++.++||||
T Consensus        78 ~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg  125 (259)
T 2p35_A           78 PNTNFGKADLATWK-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESG  125 (259)
T ss_dssp             TTSEEEECCTTTCC-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEE
T ss_pred             CCcEEEECChhhcC-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCC
Confidence            23889999999888 7789999999999999999999999999999986

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.79  E-value=7.1e-19  Score=135.62  Aligned_cols=104  Identities=11%  Similarity=0.045  Sum_probs=88.3

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~  157 (191)
                      ...+++.+... .++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.++++..    .  ++.++++|++.+ +
T Consensus        30 ~~~~~~~l~~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~----~--~v~~~~~d~~~~-~   99 (250)
T 2p7i_A           30 HPFMVRAFTPF-FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK----D--GITYIHSRFEDA-Q   99 (250)
T ss_dssp             HHHHHHHHGGG-CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC----S--CEEEEESCGGGC-C
T ss_pred             HHHHHHHHHhh-cCCCcEEEECCCCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhhh----C--CeEEEEccHHHc-C
Confidence            34455555432 356789999999999999999887  589999999999999988763    1  589999998877 4


Q ss_pred             CCCCcceEEeCCcccCcCChHHHHHHHH-hccCCC
Q 029554          158 KESSLDLAISCLGLHWTNDLPGAMIQVS-IFLLPD  191 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~d~~~~l~~i~-r~Lkpg  191 (191)
                      ++++||+|+++.+++|++|+..+++++. ++||||
T Consensus       100 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~Lkpg  134 (250)
T 2p7i_A          100 LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEG  134 (250)
T ss_dssp             CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEE
T ss_pred             cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCC
Confidence            6789999999999999999999999999 999986

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.79  E-value=2.3e-18  Score=130.98  Aligned_cols=114  Identities=12%  Similarity=0.087  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC-----CceeeE
Q 029554           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-----IETCFV  148 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-----~~~~~~  148 (191)
                      ..+....+.+.+.  ..++.+|||+|||+|.++..+++.++..+|+++|+|+.+++.++++...  ...     .++.+.
T Consensus        14 ~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~~~v~~~   89 (217)
T 3jwh_A           14 NQQRMNGVVAALK--QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDR--LRLPRNQWERLQLI   89 (217)
T ss_dssp             HHHHHHHHHHHHH--HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTT--CCCCHHHHTTEEEE
T ss_pred             HHHHHHHHHHHHH--hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHH--hcCCcccCcceEEE
Confidence            3344445555555  3467799999999999999999887778999999999999999988753  111     268999


Q ss_pred             ecCCCCCCCCCCCcceEEeCCcccCcCCh--HHHHHHHHhccCCC
Q 029554          149 VGDEEFLPLKESSLDLAISCLGLHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       149 ~~d~~~l~~~~~~fDlVis~~~l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      ++|+...+.+.++||+|+++.+++|+++.  ..+++++.++||||
T Consensus        90 ~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  134 (217)
T 3jwh_A           90 QGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPK  134 (217)
T ss_dssp             ECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred             eCCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence            99998877777899999999999999855  79999999999997

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.78  E-value=2e-18  Score=131.47  Aligned_cols=116  Identities=15%  Similarity=0.086  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCC---CCceeeEec
Q 029554           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND---NIETCFVVG  150 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~---~~~~~~~~~  150 (191)
                      .......+.+.+.  ..++.+|||+|||+|.++..+++.++..+|+++|+|+.+++.++++.....-.   ..++.+.++
T Consensus        14 ~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~   91 (219)
T 3jwg_A           14 NQQRLGTVVAVLK--SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS   91 (219)
T ss_dssp             HHHHHHHHHHHHH--HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC
T ss_pred             hHHHHHHHHHHHh--hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC
Confidence            3344445555554  34677999999999999999999887789999999999999999887531100   116899999


Q ss_pred             CCCCCCCCCCCcceEEeCCcccCcCCh--HHHHHHHHhccCCC
Q 029554          151 DEEFLPLKESSLDLAISCLGLHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       151 d~~~l~~~~~~fDlVis~~~l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      |+...++++++||+|+++.+++|+++.  ..+++++.++||||
T Consensus        92 d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  134 (219)
T 3jwg_A           92 SLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQ  134 (219)
T ss_dssp             CSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred             cccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCC
Confidence            998888777899999999999999855  68999999999997

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.78  E-value=1e-18  Score=135.07  Aligned_cols=108  Identities=19%  Similarity=0.226  Sum_probs=93.7

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~  157 (191)
                      ...+++.+.  ..++.+|||+|||+|.++..+++.+  .+|+++|+|+.|++.++++...  ....++.+.++|++.+++
T Consensus        10 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~--~~~~~v~~~~~d~~~~~~   83 (239)
T 1xxl_A           10 LGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQE--KGVENVRFQQGTAESLPF   83 (239)
T ss_dssp             HHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHH--HTCCSEEEEECBTTBCCS
T ss_pred             cchHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHH--cCCCCeEEEecccccCCC
Confidence            344555555  4578899999999999999999887  6999999999999999988754  223468999999999998


Q ss_pred             CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          158 KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++++||+|+++.+++|++|+..++.++.++||||
T Consensus        84 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg  117 (239)
T 1xxl_A           84 PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQD  117 (239)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             CCCcEEEEEECCchhhccCHHHHHHHHHHHcCCC
Confidence            8899999999999999999999999999999986

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.78  E-value=1.4e-18  Score=136.44  Aligned_cols=112  Identities=16%  Similarity=0.164  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l  155 (191)
                      .+...+++.+.  ..++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.++++.... ....++.+..+|+..+
T Consensus        48 ~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~  123 (273)
T 3bus_A           48 RLTDEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAA-GLANRVTFSYADAMDL  123 (273)
T ss_dssp             HHHHHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhc-CCCcceEEEECccccC
Confidence            34445555443  3467899999999999999998754 379999999999999999887541 2234689999999999


Q ss_pred             CCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          156 PLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       156 ~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |+++++||+|+++.+++|++|+..+++++.++||||
T Consensus       124 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg  159 (273)
T 3bus_A          124 PFEDASFDAVWALESLHHMPDRGRALREMARVLRPG  159 (273)
T ss_dssp             CSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEE
T ss_pred             CCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCC
Confidence            988899999999999999999999999999999986

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.78  E-value=1.2e-18  Score=135.56  Aligned_cols=115  Identities=16%  Similarity=0.032  Sum_probs=95.3

Q ss_pred             hHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC
Q 029554           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD  151 (191)
Q Consensus        72 ~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d  151 (191)
                      .........++..+.  ..++.+|||+|||+|..+..+++.. ..+|+++|+|+.|++.++++.... ....++.+.++|
T Consensus        19 ~~~~~~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~v~~~~~d   94 (256)
T 1nkv_A           19 PFTEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEEL-GVSERVHFIHND   94 (256)
T ss_dssp             SCCHHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEESC
T ss_pred             CCCHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc-CCCcceEEEECC
Confidence            334445556666554  4577899999999999999998764 368999999999999999887641 122469999999


Q ss_pred             CCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          152 EEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       152 ~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++.+++ +++||+|++..+++|++|+..+++++.++||||
T Consensus        95 ~~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkpg  133 (256)
T 1nkv_A           95 AAGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPG  133 (256)
T ss_dssp             CTTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE
T ss_pred             hHhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCC
Confidence            998887 789999999999999999999999999999986

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.78  E-value=4.9e-19  Score=136.50  Aligned_cols=96  Identities=22%  Similarity=0.266  Sum_probs=86.9

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..++.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.++++.     ...++.++++|+..+++++++||+|+++
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~~~d~~~~~~~~~~fD~v~~~  123 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRTG--YKAVGVDISEVMIQKGKERG-----EGPDLSFIKGDLSSLPFENEQFEAIMAI  123 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHTTT-----CBTTEEEEECBTTBCSSCTTCEEEEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhc-----ccCCceEEEcchhcCCCCCCCccEEEEc
Confidence            3467899999999999999999886  79999999999999998764     2356899999999999888999999999


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .+++|++++..++.++.++|+||
T Consensus       124 ~~l~~~~~~~~~l~~~~~~L~pg  146 (242)
T 3l8d_A          124 NSLEWTEEPLRALNEIKRVLKSD  146 (242)
T ss_dssp             SCTTSSSCHHHHHHHHHHHEEEE
T ss_pred             ChHhhccCHHHHHHHHHHHhCCC
Confidence            99999999999999999999986

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.78  E-value=1.3e-18  Score=137.76  Aligned_cols=104  Identities=20%  Similarity=0.236  Sum_probs=89.0

Q ss_pred             HHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-CCCCCcc
Q 029554           85 LEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKESSLD  163 (191)
Q Consensus        85 l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-~~~~~fD  163 (191)
                      +..+...+.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.++++.... ....++.++++|+..++ +++++||
T Consensus        62 l~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~fD  138 (285)
T 4htf_A           62 LAEMGPQKLRVLDAGGGEGQTAIKMAERG--HQVILCDLSAQMIDRAKQAAEAK-GVSDNMQFIHCAAQDVASHLETPVD  138 (285)
T ss_dssp             HHHTCSSCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHC--CCGGGEEEEESCGGGTGGGCSSCEE
T ss_pred             HHhcCCCCCEEEEeCCcchHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhc-CCCcceEEEEcCHHHhhhhcCCCce
Confidence            33333446799999999999999999876  79999999999999999887541 12256899999998877 7789999


Q ss_pred             eEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          164 LAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       164 lVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +|+++.+++|++|+..+++++.++||||
T Consensus       139 ~v~~~~~l~~~~~~~~~l~~~~~~Lkpg  166 (285)
T 4htf_A          139 LILFHAVLEWVADPRSVLQTLWSVLRPG  166 (285)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHTEEEE
T ss_pred             EEEECchhhcccCHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999986

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.77  E-value=5.6e-19  Score=140.54  Aligned_cols=143  Identities=10%  Similarity=0.028  Sum_probs=93.9

Q ss_pred             ccccCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhc--ccCCCeEEEEcCCccHHHH----HHhhcCCCce--EE
Q 029554           48 VSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDC--RKTFPTALCLGGSLEAVRR----LLRGRGGIEK--LI  119 (191)
Q Consensus        48 ~~~~d~~~~~~~~~~~a~~y~~~~~~~~~~~~~l~~~l~~~--~~~~~~VLDlGcG~G~~~~----~l~~~~~~~~--v~  119 (191)
                      ..++|.......+++....+.........+...+...+..+  ..++.+|||||||+|..+.    .+...++...  ++
T Consensus         7 ~~~~d~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~   86 (292)
T 2aot_A            7 SLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNE   86 (292)
T ss_dssp             BGGGCHHHHHHHHHHHHTTBSHHHHHHHHHHHTHHHHSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEE
T ss_pred             cccccHHHHHHHHHHHHHhccHHHHHHHHHHHhchhHHhhccCCCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEE
Confidence            35677766666666665443322223333322222222211  2345689999999997654    3334444454  49


Q ss_pred             EEECChhHHHHHHHhhhhccCCCCc--eeeEecCCCCCC------CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          120 MMDTSYDMLKLCKDAQQDAHNDNIE--TCFVVGDEEFLP------LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       120 ~vD~s~~~l~~a~~~~~~~~~~~~~--~~~~~~d~~~l~------~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++|+|+.|++.++++.... ....+  +.+...+.+.++      +++++||+|+++.++||++|+..+++++.++||||
T Consensus        87 ~vD~S~~ml~~a~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg  165 (292)
T 2aot_A           87 VVEPSAEQIAKYKELVAKT-SNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN  165 (292)
T ss_dssp             EECSCHHHHHHHHHHHHTC-SSCTTEEEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE
T ss_pred             EEeCCHHHHHHHHHHHHhc-cCCCcceEEEEecchhhhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCC
Confidence            9999999999999887531 11123  344455554432      56789999999999999999999999999999996

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.77  E-value=3e-18  Score=133.30  Aligned_cols=136  Identities=13%  Similarity=0.066  Sum_probs=102.9

Q ss_pred             ccccCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhH
Q 029554           48 VSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDM  127 (191)
Q Consensus        48 ~~~~d~~~~~~~~~~~a~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~  127 (191)
                      ...+|......+++....    ...........++..+.. ..++.+|||+|||+|.++..+++.++ .+|+++|+|+.+
T Consensus         8 ~~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~-~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~   81 (257)
T 3f4k_A            8 IHDFDFSFICNYFKLLKR----QGPGSPEATRKAVSFINE-LTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDF   81 (257)
T ss_dssp             GGGSCHHHHHHHHTTSSC----SSSCCHHHHHHHHTTSCC-CCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHH
T ss_pred             hhhhhHHHHHHHHcCccc----cCCCCHHHHHHHHHHHhc-CCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHH
Confidence            345676555444443321    111222334445544433 34667999999999999999998875 399999999999


Q ss_pred             HHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          128 LKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       128 l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++.++++.... ....++.++++|+..+++++++||+|+++.+++|+ ++..+++++.++||||
T Consensus        82 ~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pg  143 (257)
T 3f4k_A           82 IEIFNENAVKA-NCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKG  143 (257)
T ss_dssp             HHHHHHHHHHT-TCTTTEEEEECCTTSCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHHHHc-CCCCceEEEECChhhCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCC
Confidence            99999887651 22345899999999999888999999999999999 8999999999999986

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.77  E-value=6.7e-19  Score=133.24  Aligned_cols=100  Identities=8%  Similarity=-0.061  Sum_probs=83.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc----------CCCCceeeEecCCCCCCCCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH----------NDNIETCFVVGDEEFLPLKE  159 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~----------~~~~~~~~~~~d~~~l~~~~  159 (191)
                      .++.+|||+|||+|..+..|++.+  .+|+|+|+|+.|++.|+++.....          ....++.++++|+..+++++
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~g--~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~   98 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQG--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD   98 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHCC--CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence            367799999999999999999887  799999999999999988753100          01346899999999998765


Q ss_pred             -CCcceEEeCCcccCcCC--hHHHHHHHHhccCCC
Q 029554          160 -SSLDLAISCLGLHWTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       160 -~~fDlVis~~~l~~~~d--~~~~l~~i~r~Lkpg  191 (191)
                       ++||+|+++.+++|+++  ...+++++.++||||
T Consensus        99 ~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg  133 (203)
T 1pjz_A           99 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA  133 (203)
T ss_dssp             HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE
T ss_pred             CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCC
Confidence             78999999999999863  456899999999996

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.76  E-value=4.6e-18  Score=129.08  Aligned_cols=96  Identities=15%  Similarity=0.151  Sum_probs=84.9

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..++.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.++++...    ..++.++++|+..++ ++++||+|+++
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~~d~~~~~-~~~~fD~v~~~  121 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKR----WSHISWAATDILQFS-TAELFDLIVVA  121 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTT----CSSEEEEECCTTTCC-CSCCEEEEEEE
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhccc----CCCeEEEEcchhhCC-CCCCccEEEEc
Confidence            3456799999999999999999887  7999999999999999988753    337899999999887 67899999999


Q ss_pred             CcccCcCCh---HHHHHHHHhccCCC
Q 029554          169 LGLHWTNDL---PGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~---~~~l~~i~r~Lkpg  191 (191)
                      .+++|++++   ..++.++.++||||
T Consensus       122 ~~l~~~~~~~~~~~~l~~~~~~L~pg  147 (216)
T 3ofk_A          122 EVLYYLEDMTQMRTAIDNMVKMLAPG  147 (216)
T ss_dssp             SCGGGSSSHHHHHHHHHHHHHTEEEE
T ss_pred             cHHHhCCCHHHHHHHHHHHHHHcCCC
Confidence            999999987   46799999999986

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.76  E-value=4.8e-18  Score=135.08  Aligned_cols=113  Identities=16%  Similarity=0.066  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHH---hcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC
Q 029554           76 AVAENLLDRLE---DCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE  152 (191)
Q Consensus        76 ~~~~~l~~~l~---~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~  152 (191)
                      .....++..+.   . ..++.+|||+|||+|..+..+++.. ..+|+++|+|+.+++.++++.... ....++.+.++|+
T Consensus        65 ~~~~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~~~d~  141 (297)
T 2o57_A           65 RTDEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQA-GLADNITVKYGSF  141 (297)
T ss_dssp             HHHHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHH-TCTTTEEEEECCT
T ss_pred             HHHHHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhc-CCCcceEEEEcCc
Confidence            34455665552   2 3467799999999999999998863 269999999999999999877541 2235689999999


Q ss_pred             CCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          153 EFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       153 ~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ..+|+++++||+|+++.+++|++++..+++++.++||||
T Consensus       142 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg  180 (297)
T 2o57_A          142 LEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR  180 (297)
T ss_dssp             TSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             ccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCC
Confidence            999998899999999999999999999999999999986

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.76  E-value=5.2e-18  Score=133.02  Aligned_cols=112  Identities=13%  Similarity=0.128  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l  155 (191)
                      .....++..+.. ..++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++.... ....++.++++|++.+
T Consensus        32 ~~~~~~l~~l~~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~  108 (267)
T 3kkz_A           32 EVTLKALSFIDN-LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQS-GLQNRVTGIVGSMDDL  108 (267)
T ss_dssp             HHHHHHHTTCCC-CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHhccc-CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHc-CCCcCcEEEEcChhhC
Confidence            334444544442 346789999999999999999987 4569999999999999999987641 2234699999999999


Q ss_pred             CCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          156 PLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       156 ~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++++++||+|+++.+++|+ ++..+++++.++||||
T Consensus       109 ~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~Lkpg  143 (267)
T 3kkz_A          109 PFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKG  143 (267)
T ss_dssp             CCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEE
T ss_pred             CCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCC
Confidence            9888999999999999999 8999999999999986

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.76  E-value=5.8e-19  Score=139.38  Aligned_cols=103  Identities=20%  Similarity=0.274  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~  156 (191)
                      +...+++.+.  ..++.+|||+|||+|.++..+++.+  .+|+|+|+|+.|++.++++.       .++.+.++|++.++
T Consensus        45 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~  113 (279)
T 3ccf_A           45 YGEDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEKARQNY-------PHLHFDVADARNFR  113 (279)
T ss_dssp             SCCHHHHHHC--CCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHC-------TTSCEEECCTTTCC
T ss_pred             HHHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHhCC--CeEEEEECCHHHHHHHHhhC-------CCCEEEECChhhCC
Confidence            3345555554  3467899999999999999998844  89999999999999998764       24788999999888


Q ss_pred             CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          157 LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      + +++||+|+++.+++|+.|+..++.++.++||||
T Consensus       114 ~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg  147 (279)
T 3ccf_A          114 V-DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSG  147 (279)
T ss_dssp             C-SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             c-CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCC
Confidence            7 579999999999999999999999999999986

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.76  E-value=3.1e-18  Score=133.14  Aligned_cols=96  Identities=21%  Similarity=0.232  Sum_probs=86.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..+++.++ .+|+++|+|+.+++.++++..     ..++.+.++|+..+++++++||+|+++.
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v~~~~  116 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT-----SPVVCYEQKAIEDIAIEPDAYNVVLSSL  116 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC-----CTTEEEEECCGGGCCCCTTCEEEEEEES
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc-----cCCeEEEEcchhhCCCCCCCeEEEEEch
Confidence            3678999999999999999998862 399999999999999988763     4468999999999998889999999999


Q ss_pred             cccCcCChHHHHHHHHhccCCC
Q 029554          170 GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++|++++..+++++.++||||
T Consensus       117 ~l~~~~~~~~~l~~~~~~Lkpg  138 (253)
T 3g5l_A          117 ALHYIASFDDICKKVYINLKSS  138 (253)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEE
T ss_pred             hhhhhhhHHHHHHHHHHHcCCC
Confidence            9999999999999999999986

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.76  E-value=2.2e-18  Score=131.04  Aligned_cols=109  Identities=15%  Similarity=0.125  Sum_probs=93.8

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~  157 (191)
                      ..++..+.  ..++.+|||+|||+|.++..+++.+ +..+|+++|+|+.+++.++++...  ....++.+..+|+..+++
T Consensus        27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~~~d~~~~~~  102 (219)
T 3dh0_A           27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK--LGLKNVEVLKSEENKIPL  102 (219)
T ss_dssp             HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH--HTCTTEEEEECBTTBCSS
T ss_pred             HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH--cCCCcEEEEecccccCCC
Confidence            34555554  4467799999999999999998875 667999999999999999988764  223368999999999988


Q ss_pred             CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          158 KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++++||+|+++.+++|++++..++.++.++|+||
T Consensus       103 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg  136 (219)
T 3dh0_A          103 PDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPF  136 (219)
T ss_dssp             CSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEE
T ss_pred             CCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCC
Confidence            8899999999999999999999999999999986

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.76  E-value=3.9e-19  Score=133.81  Aligned_cols=92  Identities=13%  Similarity=0.160  Sum_probs=83.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      .+.+|||+|||+|.++..++..+  .+|+++|+|+.|++.++++..       ++.++++|+..+++++++||+|+++.+
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~d~~~~~~~~~~fD~v~~~~~  111 (203)
T 3h2b_A           41 VDGVILDVGSGTGRWTGHLASLG--HQIEGLEPATRLVELARQTHP-------SVTFHHGTITDLSDSPKRWAGLLAWYS  111 (203)
T ss_dssp             CCSCEEEETCTTCHHHHHHHHTT--CCEEEECCCHHHHHHHHHHCT-------TSEEECCCGGGGGGSCCCEEEEEEESS
T ss_pred             CCCeEEEecCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHhCC-------CCeEEeCcccccccCCCCeEEEEehhh
Confidence            37789999999999999999886  799999999999999987743       388999999988888899999999999


Q ss_pred             ccCcC--ChHHHHHHHHhccCCC
Q 029554          171 LHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      ++|++  ++..++.++.++||||
T Consensus       112 l~~~~~~~~~~~l~~~~~~L~pg  134 (203)
T 3h2b_A          112 LIHMGPGELPDALVALRMAVEDG  134 (203)
T ss_dssp             STTCCTTTHHHHHHHHHHTEEEE
T ss_pred             HhcCCHHHHHHHHHHHHHHcCCC
Confidence            99996  8999999999999986

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.76  E-value=3.1e-18  Score=129.58  Aligned_cols=90  Identities=20%  Similarity=0.233  Sum_probs=81.0

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ++.+|||+|||+|.++..+   + ..+++++|+|+.+++.++++.       .++.++++|+..+++++++||+|+++.+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~-~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~v~~~~~  104 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---P-YPQKVGVEPSEAMLAVGRRRA-------PEATWVRAWGEALPFPGESFDVVLLFTT  104 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---C-CSEEEEECCCHHHHHHHHHHC-------TTSEEECCCTTSCCSCSSCEEEEEEESC
T ss_pred             CCCeEEEECCCCCHhHHhC---C-CCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcccccCCCCCCcEEEEEEcCh
Confidence            6789999999999999888   2 248999999999999998775       2378899999999988899999999999


Q ss_pred             ccCcCChHHHHHHHHhccCCC
Q 029554          171 LHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++|++++..++.++.++||||
T Consensus       105 l~~~~~~~~~l~~~~~~L~pg  125 (211)
T 2gs9_A          105 LEFVEDVERVLLEARRVLRPG  125 (211)
T ss_dssp             TTTCSCHHHHHHHHHHHEEEE
T ss_pred             hhhcCCHHHHHHHHHHHcCCC
Confidence            999999999999999999986

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.75  E-value=1.2e-17  Score=130.66  Aligned_cols=132  Identities=14%  Similarity=0.136  Sum_probs=97.1

Q ss_pred             CCccccCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECCh
Q 029554           46 SRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY  125 (191)
Q Consensus        46 ~~~~~~d~~~~~~~~~~~a~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~  125 (191)
                      .....|+...... ++......+ ..  .......+.+.+.....++.+|||+|||+|.++..+.+.+  .+|+++|+|+
T Consensus         9 ~~~~~y~~~~a~~-yd~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~   82 (263)
T 3pfg_A            9 GPQADYSGEIAEL-YDLVHQGKG-KD--YHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSA   82 (263)
T ss_dssp             -CBCSCCHHHHHH-HHHHHHHTT-CC--HHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCH
T ss_pred             CcccccchhHHHH-HHHHhhcCC-CC--HHHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCH
Confidence            3456788543333 333332111 11  1223334444444333356799999999999999999887  7899999999


Q ss_pred             hHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC-cccCcC---ChHHHHHHHHhccCCC
Q 029554          126 DMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL-GLHWTN---DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       126 ~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~-~l~~~~---d~~~~l~~i~r~Lkpg  191 (191)
                      .+++.++++..       ++.++++|+..+++ +++||+|+++. +++|+.   +...+++++.++||||
T Consensus        83 ~~~~~a~~~~~-------~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pg  144 (263)
T 3pfg_A           83 DMLAIARRRNP-------DAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPD  144 (263)
T ss_dssp             HHHHHHHHHCT-------TSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEE
T ss_pred             HHHHHHHhhCC-------CCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCC
Confidence            99999988753       48899999998887 68999999998 999995   6668899999999986

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.75  E-value=7.7e-18  Score=129.34  Aligned_cols=107  Identities=17%  Similarity=0.202  Sum_probs=90.3

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK  158 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~  158 (191)
                      ..++..+.. ..++.+|||+|||+|.++..+++.+|..+++++|+|+.+++.++++...    ..++.++++|+..++++
T Consensus        33 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~~d~~~~~~~  107 (234)
T 3dtn_A           33 GVSVSIASV-DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG----NLKVKYIEADYSKYDFE  107 (234)
T ss_dssp             HHHHHTCCC-SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS----CTTEEEEESCTTTCCCC
T ss_pred             HHHHHHhhc-CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc----CCCEEEEeCchhccCCC
Confidence            344444432 3467899999999999999999987778999999999999999988753    22799999999998877


Q ss_pred             CCCcceEEeCCcccCcCChH--HHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWTNDLP--GAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~~d~~--~~l~~i~r~Lkpg  191 (191)
                       ++||+|+++.+++|+++..  .+++++.++||||
T Consensus       108 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  141 (234)
T 3dtn_A          108 -EKYDMVVSALSIHHLEDEDKKELYKRSYSILKES  141 (234)
T ss_dssp             -SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             -CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCC
Confidence             8999999999999998765  5999999999986

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.75  E-value=5.8e-18  Score=131.98  Aligned_cols=109  Identities=14%  Similarity=0.136  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l  155 (191)
                      .....++..+.  ..++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.++++...    ..++.++++|+..+
T Consensus        42 ~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~~d~~~~  114 (266)
T 3ujc_A           42 EATKKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSG----NNKIIFEANDILTK  114 (266)
T ss_dssp             HHHHHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCS----CTTEEEEECCTTTC
T ss_pred             HHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhc----CCCeEEEECccccC
Confidence            33445554443  3467799999999999999998873 37999999999999999988743    16799999999999


Q ss_pred             CCCCCCcceEEeCCcccCc--CChHHHHHHHHhccCCC
Q 029554          156 PLKESSLDLAISCLGLHWT--NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       156 ~~~~~~fDlVis~~~l~~~--~d~~~~l~~i~r~Lkpg  191 (191)
                      ++++++||+|+++.+++|+  .++..++.++.++||||
T Consensus       115 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg  152 (266)
T 3ujc_A          115 EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPT  152 (266)
T ss_dssp             CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCC
Confidence            9888999999999999999  89999999999999986

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.75  E-value=6.6e-18  Score=134.63  Aligned_cols=101  Identities=14%  Similarity=0.130  Sum_probs=88.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC------CCc
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE------SSL  162 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~------~~f  162 (191)
                      .++.+|||+|||+|..+..+++.. +..+|+|+|+|+.+++.++++.........++.++++|++.+++++      ++|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            467899999999999999999643 5699999999999999999987652113567999999999888776      899


Q ss_pred             ceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          163 DLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       163 DlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |+|+++.++||+ |+..++.++.++||||
T Consensus       115 D~V~~~~~l~~~-~~~~~l~~~~~~Lkpg  142 (299)
T 3g5t_A          115 DMITAVECAHWF-DFEKFQRSAYANLRKD  142 (299)
T ss_dssp             EEEEEESCGGGS-CHHHHHHHHHHHEEEE
T ss_pred             eEEeHhhHHHHh-CHHHHHHHHHHhcCCC
Confidence            999999999999 9999999999999986

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.75  E-value=3.6e-18  Score=134.35  Aligned_cols=100  Identities=19%  Similarity=0.225  Sum_probs=90.9

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||||||+|.++..+++.+|..+|+++|+|+.+++.++++...  ....++.+...|+..+++++++||+|+++.
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  113 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEK--NGIKNVKFLQANIFSLPFEDSSFDHIFVCF  113 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--TTCCSEEEEECCGGGCCSCTTCEEEEEEES
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--cCCCCcEEEEcccccCCCCCCCeeEEEEec
Confidence            467899999999999999999887778999999999999999988765  233469999999999988889999999999


Q ss_pred             cccCcCChHHHHHHHHhccCCC
Q 029554          170 GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++|++|+..++.++.++||||
T Consensus       114 ~l~~~~~~~~~l~~~~~~L~pg  135 (276)
T 3mgg_A          114 VLEHLQSPEEALKSLKKVLKPG  135 (276)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEE
T ss_pred             hhhhcCCHHHHHHHHHHHcCCC
Confidence            9999999999999999999986

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.75  E-value=1e-17  Score=126.90  Aligned_cols=125  Identities=16%  Similarity=0.018  Sum_probs=96.6

Q ss_pred             HHHHHHHhhhhcCCCchHHHH--HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554           56 KRKQRDRAAWLTRPNDSFVDA--VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (191)
Q Consensus        56 ~~~~~~~~a~~y~~~~~~~~~--~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~  133 (191)
                      ...+++..+..|+. .+....  ....++..+.. ..++.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.+++
T Consensus        11 ~~~~~~~~a~~y~~-~~~~~~~~~~~~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~   86 (218)
T 3ou2_A           11 QLSYYRARASEYDA-TFVPYMDSAAPAALERLRA-GNIRGDVLELASGTGYWTRHLSGLA--DRVTALDGSAEMIAEAGR   86 (218)
T ss_dssp             HHHHHHHHGGGHHH-HHHHHHTTTHHHHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHh
Confidence            34556666655554 111111  13455555553 3356799999999999999998886  799999999999999976


Q ss_pred             hhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCCh--HHHHHHHHhccCCC
Q 029554          134 AQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       134 ~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      .      ...++.++++|+..+ +++++||+|+++.+++|+++.  ..+++++.++|+||
T Consensus        87 ~------~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg  139 (218)
T 3ou2_A           87 H------GLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPG  139 (218)
T ss_dssp             G------CCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             c------CCCCeEEEecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCC
Confidence            2      234689999999887 678999999999999999885  88999999999986

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.75  E-value=1.1e-17  Score=127.14  Aligned_cols=101  Identities=21%  Similarity=0.247  Sum_probs=88.3

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE  159 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~  159 (191)
                      .++..+.  ..++.+|||+|||+|.++..+++.+  .+++++|+|+.+++.++++..      .++.+.++|+..++++ 
T Consensus        36 ~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~d~~~~~~~-  104 (220)
T 3hnr_A           36 DILEDVV--NKSFGNVLEFGVGTGNLTNKLLLAG--RTVYGIEPSREMRMIAKEKLP------KEFSITEGDFLSFEVP-  104 (220)
T ss_dssp             HHHHHHH--HTCCSEEEEECCTTSHHHHHHHHTT--CEEEEECSCHHHHHHHHHHSC------TTCCEESCCSSSCCCC-
T ss_pred             HHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhCC--CeEEEEeCCHHHHHHHHHhCC------CceEEEeCChhhcCCC-
Confidence            4555554  3467899999999999999999876  799999999999999988763      4588999999998877 


Q ss_pred             CCcceEEeCCcccCcCChHH--HHHHHHhccCCC
Q 029554          160 SSLDLAISCLGLHWTNDLPG--AMIQVSIFLLPD  191 (191)
Q Consensus       160 ~~fDlVis~~~l~~~~d~~~--~l~~i~r~Lkpg  191 (191)
                      ++||+|+++.+++|+++...  ++.++.++||||
T Consensus       105 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  138 (220)
T 3hnr_A          105 TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKG  138 (220)
T ss_dssp             SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTT
T ss_pred             CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCC
Confidence            89999999999999998877  999999999997

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.74  E-value=6.4e-18  Score=127.95  Aligned_cols=120  Identities=13%  Similarity=-0.035  Sum_probs=94.7

Q ss_pred             HHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhh
Q 029554           56 KRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (191)
Q Consensus        56 ~~~~~~~~a~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~  135 (191)
                      ...+++..+..|+..... ..   .+...+.. ..++.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.++++.
T Consensus        13 ~~~~~~~~~~~y~~~~~~-~~---~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~   85 (211)
T 3e23_A           13 TLRFYRGNATAYAERQPR-SA---TLTKFLGE-LPAGAKILELGCGAGYQAEAMLAAG--FDVDATDGSPELAAEASRRL   85 (211)
T ss_dssp             HHHHHHHSHHHHTTCCCC-CH---HHHHHHTT-SCTTCEEEESSCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccch-hH---HHHHHHHh-cCCCCcEEEECCCCCHHHHHHHHcC--CeEEEECCCHHHHHHHHHhc
Confidence            345566666666664322 11   22222332 3367799999999999999999876  79999999999999998875


Q ss_pred             hhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          136 QDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       136 ~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                              ++.+..+|+..++ ++++||+|+++.+++|++  ++..+++++.++||||
T Consensus        86 --------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  134 (211)
T 3e23_A           86 --------GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPG  134 (211)
T ss_dssp             --------TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             --------CCceEEeeeccCC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCC
Confidence                    2677888988888 778999999999999998  7889999999999986

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.74  E-value=2.9e-17  Score=125.23  Aligned_cols=110  Identities=22%  Similarity=0.236  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~  156 (191)
                      ....+.+.+.....++.+|||+|||+|.++..+...+  .+++++|+|+.+++.++++...   ...++.++++|+..++
T Consensus        24 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~~~d~~~~~   98 (227)
T 1ve3_A           24 RIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAREYAKS---RESNVEFIVGDARKLS   98 (227)
T ss_dssp             HHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCCCEEEECCTTSCC
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHh---cCCCceEEECchhcCC
Confidence            3444555544433457899999999999999999887  4999999999999999988754   2256899999998888


Q ss_pred             CCCCCcceEEeCCc--ccCcCChHHHHHHHHhccCCC
Q 029554          157 LKESSLDLAISCLG--LHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ~~~~~fDlVis~~~--l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++++||+|+++.+  ++|..++..++.++.++|+||
T Consensus        99 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~g  135 (227)
T 1ve3_A           99 FEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPS  135 (227)
T ss_dssp             SCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEE
T ss_pred             CCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCC
Confidence            88889999999999  666668889999999999986

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.74  E-value=9.4e-18  Score=132.94  Aligned_cols=109  Identities=13%  Similarity=0.029  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~  156 (191)
                      ...+++.+.. ..++.+|||+|||+|.++..+++..| ..+|+++|+|+.+++.++++...   ...++.+.++|+..++
T Consensus        10 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~v~~~~~d~~~~~   85 (284)
T 3gu3_A           10 VSFLVNTVWK-ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL---LPYDSEFLEGDATEIE   85 (284)
T ss_dssp             HHHHHHTTSC-CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHS---SSSEEEEEESCTTTCC
T ss_pred             HHHHHHHHhc-cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHh---cCCceEEEEcchhhcC
Confidence            3344444432 34678999999999999999998866 38999999999999999988754   3337999999999888


Q ss_pred             CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          157 LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++ ++||+|+++.+++|++|+..++.++.++||||
T Consensus        86 ~~-~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg  119 (284)
T 3gu3_A           86 LN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKG  119 (284)
T ss_dssp             CS-SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEE
T ss_pred             cC-CCeeEEEECChhhcCCCHHHHHHHHHHHcCCC
Confidence            74 69999999999999999999999999999986

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.73  E-value=6.2e-18  Score=130.25  Aligned_cols=111  Identities=17%  Similarity=0.215  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      ......+...+.....++.+|||+|||+|.++..+.+.+  .+++++|+|+.|++.++++...   ...++.+.++|+..
T Consensus        21 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~s~~~~~~a~~~~~~---~~~~~~~~~~d~~~   95 (246)
T 1y8c_A           21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRS---QGLKPRLACQDISN   95 (246)
T ss_dssp             HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHH---TTCCCEEECCCGGG
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC--CcEEEEECCHHHHHHHHHHHhh---cCCCeEEEeccccc
Confidence            334445555554322367799999999999999999876  7899999999999999988754   22268899999988


Q ss_pred             CCCCCCCcceEEeCC-cccCc---CChHHHHHHHHhccCCC
Q 029554          155 LPLKESSLDLAISCL-GLHWT---NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 l~~~~~~fDlVis~~-~l~~~---~d~~~~l~~i~r~Lkpg  191 (191)
                      ++++ ++||+|+++. +++|+   .++..++.++.++|+||
T Consensus        96 ~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pg  135 (246)
T 1y8c_A           96 LNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG  135 (246)
T ss_dssp             CCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE
T ss_pred             CCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCC
Confidence            8876 8899999998 99999   57788999999999986

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.73  E-value=1.2e-17  Score=137.89  Aligned_cols=102  Identities=19%  Similarity=0.080  Sum_probs=88.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhc-----c-CCCCceeeEecCCCCC------C
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDA-----H-NDNIETCFVVGDEEFL------P  156 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~-----~-~~~~~~~~~~~d~~~l------~  156 (191)
                      .++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.++++....     + ....++.++++|++.+      +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            367799999999999999998763 5679999999999999999876531     1 1225799999999876      8


Q ss_pred             CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          157 LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++++||+|+++.+++|++|+..+++++.++||||
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg  196 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDG  196 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             CCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCC
Confidence            88899999999999999999999999999999996

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.73  E-value=2e-17  Score=132.67  Aligned_cols=99  Identities=11%  Similarity=-0.027  Sum_probs=87.1

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.++++.... ....++.++++|++.+++++++||+|+++.
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  193 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRAREL-RIDDHVRSRVCNMLDTPFDKGAVTASWNNE  193 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEECCTTSCCCCTTCEEEEEEES
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc-CCCCceEEEECChhcCCCCCCCEeEEEECC
Confidence            456799999999999999998872 278999999999999999887651 223469999999999998889999999999


Q ss_pred             cccCcCChHHHHHHHHhccCCC
Q 029554          170 GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++|+ ++..++.++.++||||
T Consensus       194 ~l~~~-~~~~~l~~~~~~Lkpg  214 (312)
T 3vc1_A          194 STMYV-DLHDLFSEHSRFLKVG  214 (312)
T ss_dssp             CGGGS-CHHHHHHHHHHHEEEE
T ss_pred             chhhC-CHHHHHHHHHHHcCCC
Confidence            99999 6999999999999986

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.72  E-value=1.6e-17  Score=128.81  Aligned_cols=106  Identities=16%  Similarity=0.161  Sum_probs=89.0

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK  158 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~  158 (191)
                      ..++..+.  ..++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.++++...    ..++.++++|+..++++
T Consensus        83 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~~d~~~~~~~  155 (254)
T 1xtp_A           83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG----MPVGKFILASMETATLP  155 (254)
T ss_dssp             HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT----SSEEEEEESCGGGCCCC
T ss_pred             HHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhcc----CCceEEEEccHHHCCCC
Confidence            34444433  3467799999999999999988775 46899999999999999988743    25689999999888888


Q ss_pred             CCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      +++||+|++..+++|++  ++..++.++.++||||
T Consensus       156 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  190 (254)
T 1xtp_A          156 PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPN  190 (254)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             CCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCC
Confidence            89999999999999994  5889999999999986

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.72  E-value=1.2e-17  Score=129.04  Aligned_cols=98  Identities=14%  Similarity=0.060  Sum_probs=85.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.++++....  ...++.++++|+..+++++++||+|+++.+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  155 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEE--GKRVRNYFCCGLQDFTPEPDSYDVIWIQWV  155 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGG--GGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhc--CCceEEEEEcChhhcCCCCCCEEEEEEcch
Confidence            47799999999999999988875 469999999999999999887541  134688999999888888889999999999


Q ss_pred             ccCcCChH--HHHHHHHhccCCC
Q 029554          171 LHWTNDLP--GAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~~--~~l~~i~r~Lkpg  191 (191)
                      ++|+++..  .++.++.++||||
T Consensus       156 l~~~~~~~~~~~l~~~~~~Lkpg  178 (241)
T 2ex4_A          156 IGHLTDQHLAEFLRRCKGSLRPN  178 (241)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCC
Confidence            99998744  8999999999986

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.72  E-value=5.4e-17  Score=128.65  Aligned_cols=109  Identities=16%  Similarity=0.075  Sum_probs=88.7

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC--CCCceeeEecCCCCCC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN--DNIETCFVVGDEEFLP  156 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~~~~d~~~l~  156 (191)
                      ..+...+.  ..++.+|||+|||+|.++..+++.+  .+|+|+|+|+.|++.++++......  ...++.+..+|...++
T Consensus        47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (293)
T 3thr_A           47 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD  122 (293)
T ss_dssp             HHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred             HHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence            34444444  3467799999999999999999887  6999999999999999887532111  1235778888888776


Q ss_pred             ---CCCCCcceEEeC-CcccCcCC-------hHHHHHHHHhccCCC
Q 029554          157 ---LKESSLDLAISC-LGLHWTND-------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ---~~~~~fDlVis~-~~l~~~~d-------~~~~l~~i~r~Lkpg  191 (191)
                         +++++||+|+|+ .+++|+.+       +..+++++.++||||
T Consensus       123 ~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkpg  168 (293)
T 3thr_A          123 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG  168 (293)
T ss_dssp             HHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEE
T ss_pred             cccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCC
Confidence               778999999998 89999999       999999999999986

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.72  E-value=3.5e-17  Score=126.03  Aligned_cols=96  Identities=26%  Similarity=0.274  Sum_probs=85.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|..+..+.+.+ ..+|+++|+|+.+++.++++...     .++.+.++|+..+++++++||+|+++.
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~  115 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGPD-----TGITYERADLDKLHLPQDSFDLAYSSL  115 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSCS-----SSEEEEECCGGGCCCCTTCEEEEEEES
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhccc-----CCceEEEcChhhccCCCCCceEEEEec
Confidence            467799999999999999998875 23999999999999999887632     358899999988888889999999999


Q ss_pred             cccCcCChHHHHHHHHhccCCC
Q 029554          170 GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++|++++..+++++.++|+||
T Consensus       116 ~l~~~~~~~~~l~~~~~~L~pg  137 (243)
T 3bkw_A          116 ALHYVEDVARLFRTVHQALSPG  137 (243)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEE
T ss_pred             cccccchHHHHHHHHHHhcCcC
Confidence            9999999999999999999986

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.71  E-value=3.7e-17  Score=122.12  Aligned_cols=96  Identities=16%  Similarity=0.115  Sum_probs=84.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ++.+|||+|||+|.++..+++.+  .+++++|+|+.+++.++++...  ....++.+..+|+..+++ +++||+|+++.+
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~  106 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAANG--YDVDAWDKNAMSIANVERIKSI--ENLDNLHTRVVDLNNLTF-DRQYDFILSTVV  106 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH--HTCTTEEEEECCGGGCCC-CCCEEEEEEESC
T ss_pred             CCCeEEEEcCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHh--CCCCCcEEEEcchhhCCC-CCCceEEEEcch
Confidence            56799999999999999998875  7999999999999999988754  222358999999988887 789999999999


Q ss_pred             ccCcC--ChHHHHHHHHhccCCC
Q 029554          171 LHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      ++|++  +...++.++.++||||
T Consensus       107 l~~~~~~~~~~~l~~~~~~L~~g  129 (199)
T 2xvm_A          107 LMFLEAKTIPGLIANMQRCTKPG  129 (199)
T ss_dssp             GGGSCGGGHHHHHHHHHHTEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCC
Confidence            99997  7899999999999986

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.71  E-value=1.6e-17  Score=129.81  Aligned_cols=100  Identities=11%  Similarity=-0.057  Sum_probs=83.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh---------cc------CCCCceeeEecCCCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD---------AH------NDNIETCFVVGDEEF  154 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~---------~~------~~~~~~~~~~~d~~~  154 (191)
                      .++.+|||+|||+|..+..|++.+  .+|+|+|+|+.|++.|+++...         ..      ....++.+.++|+..
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRG--HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTT--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            367799999999999999999987  7999999999999999876521         00      023568999999998


Q ss_pred             CCCCC-CCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          155 LPLKE-SSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 l~~~~-~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      +++++ ++||+|+++.+++|++  +...+++++.++||||
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG  184 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE  184 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE
T ss_pred             CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC
Confidence            88654 8999999999999986  3567899999999996

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.71  E-value=3.3e-17  Score=123.52  Aligned_cols=105  Identities=21%  Similarity=0.231  Sum_probs=86.0

Q ss_pred             HHHHHHhcccCCCeEEEEcCCccHH-HHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC
Q 029554           81 LLDRLEDCRKTFPTALCLGGSLEAV-RRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE  159 (191)
Q Consensus        81 l~~~l~~~~~~~~~VLDlGcG~G~~-~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~  159 (191)
                      ++..+.. ..++.+|||+|||+|.. ...+...+  .+|+++|+|+.|++.++++...   ...++.+.++|+..+++++
T Consensus        14 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~~~d~~~~~~~~   87 (209)
T 2p8j_A           14 FLKYCNE-SNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENFSRE---NNFKLNISKGDIRKLPFKD   87 (209)
T ss_dssp             HHHHHHH-SSSCSEEEEESCCSSSCTHHHHHHTT--CEEEEEECCHHHHHHHHHHHHH---HTCCCCEEECCTTSCCSCT
T ss_pred             HHHHHhc-cCCCCEEEEECCCCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHh---cCCceEEEECchhhCCCCC
Confidence            3334443 34678999999999987 44555544  7999999999999999988754   2245889999999998888


Q ss_pred             CCcceEEeCCcccCc--CChHHHHHHHHhccCCC
Q 029554          160 SSLDLAISCLGLHWT--NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       160 ~~fDlVis~~~l~~~--~d~~~~l~~i~r~Lkpg  191 (191)
                      ++||+|+++.+++|+  .++..++.++.++||||
T Consensus        88 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  121 (209)
T 2p8j_A           88 ESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPG  121 (209)
T ss_dssp             TCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             CceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCC
Confidence            999999999999999  67889999999999986

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.71  E-value=1e-16  Score=127.90  Aligned_cols=98  Identities=12%  Similarity=-0.030  Sum_probs=84.2

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..++.+|||||||+|.++..+++..+ .+|+++|+|+.+++.++++... .+...++.+..+|+..+   +++||+|+++
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~---~~~fD~v~~~  144 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDE-VDSPRRKEVRIQGWEEF---DEPVDRIVSL  144 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHH-SCCSSCEEEEECCGGGC---CCCCSEEEEE
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEECCHHHc---CCCccEEEEc
Confidence            34677999999999999999988733 7899999999999999998765 12234689999998776   5889999999


Q ss_pred             CcccCcCCh---------HHHHHHHHhccCCC
Q 029554          169 LGLHWTNDL---------PGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~---------~~~l~~i~r~Lkpg  191 (191)
                      .+++|++|+         ..+++++.++||||
T Consensus       145 ~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkpg  176 (302)
T 3hem_A          145 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDD  176 (302)
T ss_dssp             SCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT
T ss_pred             chHHhcCccccccchhHHHHHHHHHHHhcCCC
Confidence            999999766         79999999999997

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.71  E-value=5.8e-17  Score=129.99  Aligned_cols=119  Identities=17%  Similarity=0.186  Sum_probs=92.3

Q ss_pred             hHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC-----CCCcee
Q 029554           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN-----DNIETC  146 (191)
Q Consensus        72 ~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-----~~~~~~  146 (191)
                      |++..+...+++.+.....++.+|||+|||+|.++..+... +..+|+++|+|+.|++.++++......     ...++.
T Consensus        15 ~~k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~   93 (313)
T 3bgv_A           15 WMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAE   93 (313)
T ss_dssp             HHHHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEE
T ss_pred             HHHHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEE
Confidence            45556666677666643346789999999999999988874 357999999999999999988753110     223689


Q ss_pred             eEecCCCCCC----CC--CCCcceEEeCCcccCc-CC---hHHHHHHHHhccCCC
Q 029554          147 FVVGDEEFLP----LK--ESSLDLAISCLGLHWT-ND---LPGAMIQVSIFLLPD  191 (191)
Q Consensus       147 ~~~~d~~~l~----~~--~~~fDlVis~~~l~~~-~d---~~~~l~~i~r~Lkpg  191 (191)
                      ++++|++.++    ++  +++||+|+|++++||+ ++   +..++.++.++||||
T Consensus        94 ~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg  148 (313)
T 3bgv_A           94 FITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPG  148 (313)
T ss_dssp             EEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEE
T ss_pred             EEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCC
Confidence            9999988765    53  4589999999999998 44   568999999999986

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.71  E-value=4e-17  Score=125.61  Aligned_cols=97  Identities=15%  Similarity=0.042  Sum_probs=84.0

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      +..+|||+|||+|.++..++..+  .+|+++|+|+.+++.++++... .....++.+.++|+..++ ++++||+|+++.+
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~  141 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPE--RFVVGLDISESALAKANETYGS-SPKAEYFSFVKEDVFTWR-PTELFDLIFDYVF  141 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTT--EEEEEECSCHHHHHHHHHHHTT-SGGGGGEEEECCCTTTCC-CSSCEEEEEEESS
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCC--CeEEEEECCHHHHHHHHHHhhc-cCCCcceEEEECchhcCC-CCCCeeEEEEChh
Confidence            45699999999999999998865  8999999999999999988753 112356899999998877 4568999999999


Q ss_pred             ccCcC--ChHHHHHHHHhccCCC
Q 029554          171 LHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      ++|++  +...++.++.++||||
T Consensus       142 l~~~~~~~~~~~l~~~~~~Lkpg  164 (235)
T 3lcc_A          142 FCAIEPEMRPAWAKSMYELLKPD  164 (235)
T ss_dssp             TTTSCGGGHHHHHHHHHHHEEEE
T ss_pred             hhcCCHHHHHHHHHHHHHHCCCC
Confidence            99998  8899999999999986

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.71  E-value=1.6e-16  Score=125.57  Aligned_cols=113  Identities=13%  Similarity=0.060  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCc---cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEec
Q 029554           74 VDAVAENLLDRLEDCRKTFPTALCLGGSL---EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG  150 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~---G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~  150 (191)
                      ......+++..+.. .....+|||||||+   |.++..+....|..+|+++|+|+.|++.++++..    ...++.++++
T Consensus        61 ~~~~~~~~~~~l~~-~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~----~~~~v~~~~~  135 (274)
T 2qe6_A           61 NRKVLVRGVRFLAG-EAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA----KDPNTAVFTA  135 (274)
T ss_dssp             HHHHHHHHHHHHHT-TTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT----TCTTEEEEEC
T ss_pred             HhHHHHHHHHHHhh-ccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC----CCCCeEEEEe
Confidence            33444455554441 22346899999999   9988877777777899999999999999998873    2346899999


Q ss_pred             CCCCCC-----------CCCCCcceEEeCCcccCcCC--hHHHHHHHHhccCCC
Q 029554          151 DEEFLP-----------LKESSLDLAISCLGLHWTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       151 d~~~l~-----------~~~~~fDlVis~~~l~~~~d--~~~~l~~i~r~Lkpg  191 (191)
                      |+...+           ++..+||+|+++.++||++|  +..+++++.++|+||
T Consensus       136 D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pG  189 (274)
T 2qe6_A          136 DVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPG  189 (274)
T ss_dssp             CTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTT
T ss_pred             eCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCC
Confidence            986421           23358999999999999987  889999999999997

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.71  E-value=1.3e-16  Score=124.69  Aligned_cols=91  Identities=21%  Similarity=0.307  Sum_probs=79.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ++.+|||+|||+|.++..+.+.+  .+|+++|+|+.|++.++++..      .  .+.++|++.+++++++||+|++..+
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~------~--~~~~~d~~~~~~~~~~fD~v~~~~~  123 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERG--FEVVLVDPSKEMLEVAREKGV------K--NVVEAKAEDLPFPSGAFEAVLALGD  123 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTT--CEEEEEESCHHHHHHHHHHTC------S--CEEECCTTSCCSCTTCEEEEEECSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcC--CeEEEEeCCHHHHHHHHhhcC------C--CEEECcHHHCCCCCCCEEEEEEcch
Confidence            67899999999999999999876  799999999999999988752      1  2788999989888899999999886


Q ss_pred             ccC-cCChHHHHHHHHhccCCC
Q 029554          171 LHW-TNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~-~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++| .+++..+++++.++||||
T Consensus       124 ~~~~~~~~~~~l~~~~~~Lkpg  145 (260)
T 2avn_A          124 VLSYVENKDKAFSEIRRVLVPD  145 (260)
T ss_dssp             HHHHCSCHHHHHHHHHHHEEEE
T ss_pred             hhhccccHHHHHHHHHHHcCCC
Confidence            554 588999999999999986

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.70  E-value=3e-17  Score=126.74  Aligned_cols=102  Identities=19%  Similarity=0.116  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-  155 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-  155 (191)
                      +...+...+.. ..++.+|||||||+|.++..+.+.+  .+|+|+|+|+.+++.++++          +.++.+|.... 
T Consensus        28 ~~~~~~~~l~~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~----------~~~~~~d~~~~~   94 (240)
T 3dli_A           28 VKARLRRYIPY-FKGCRRVLDIGCGRGEFLELCKEEG--IESIGVDINEDMIKFCEGK----------FNVVKSDAIEYL   94 (240)
T ss_dssp             HHHHHGGGGGG-TTTCSCEEEETCTTTHHHHHHHHHT--CCEEEECSCHHHHHHHHTT----------SEEECSCHHHHH
T ss_pred             HHHHHHHHHhh-hcCCCeEEEEeCCCCHHHHHHHhCC--CcEEEEECCHHHHHHHHhh----------cceeeccHHHHh
Confidence            34444444443 2466799999999999999998876  7899999999999998654          56777887654 


Q ss_pred             -CCCCCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          156 -PLKESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       156 -~~~~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                       ++++++||+|+++.+++|++  +...+++++.++||||
T Consensus        95 ~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~Lkpg  133 (240)
T 3dli_A           95 KSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYS  133 (240)
T ss_dssp             HTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTT
T ss_pred             hhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCC
Confidence             77889999999999999998  4599999999999997

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.70  E-value=1e-16  Score=122.59  Aligned_cols=100  Identities=19%  Similarity=0.187  Sum_probs=87.1

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC---CCCceeeEecCCCCCCCCCCCcceEE
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN---DNIETCFVVGDEEFLPLKESSLDLAI  166 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~---~~~~~~~~~~d~~~l~~~~~~fDlVi  166 (191)
                      .++.+|||+|||+|.++..++..+  .+|+++|+|+.+++.++++......   ...++.+.++|...+++++++||+|+
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  106 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKG--YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV  106 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence            367799999999999999999886  7999999999999999988754111   02368999999999998889999999


Q ss_pred             eCCcccCcCChH---HHHHHHHhccCCC
Q 029554          167 SCLGLHWTNDLP---GAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~~~d~~---~~l~~i~r~Lkpg  191 (191)
                      ++.+++|+.++.   .+++++.++|+||
T Consensus       107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pg  134 (235)
T 3sm3_A          107 MQAFLTSVPDPKERSRIIKEVFRVLKPG  134 (235)
T ss_dssp             EESCGGGCCCHHHHHHHHHHHHHHEEEE
T ss_pred             EcchhhcCCCHHHHHHHHHHHHHHcCCC
Confidence            999999999988   8999999999986

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.70  E-value=2.3e-16  Score=138.88  Aligned_cols=116  Identities=11%  Similarity=0.030  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhcc----CCCCceeeE
Q 029554           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAH----NDNIETCFV  148 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~----~~~~~~~~~  148 (191)
                      .......+++.+.  ..++.+|||||||+|.++..|++.+ +..+|+|+|+|+.|++.|+++.....    ....++.++
T Consensus       706 ~eqRle~LLelL~--~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefi  783 (950)
T 3htx_A          706 SKQRVEYALKHIR--ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLY  783 (950)
T ss_dssp             HHHHHHHHHHHHH--HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEE
T ss_pred             HHHHHHHHHHHhc--ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEE
Confidence            3344445555555  3467899999999999999999887 55799999999999999988654211    133579999


Q ss_pred             ecCCCCCCCCCCCcceEEeCCcccCcCChH--HHHHHHHhccCCC
Q 029554          149 VGDEEFLPLKESSLDLAISCLGLHWTNDLP--GAMIQVSIFLLPD  191 (191)
Q Consensus       149 ~~d~~~l~~~~~~fDlVis~~~l~~~~d~~--~~l~~i~r~Lkpg  191 (191)
                      ++|+..+++.+++||+|+++.+++|+++..  .++.++.++||||
T Consensus       784 qGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG  828 (950)
T 3htx_A          784 DGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK  828 (950)
T ss_dssp             ESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             ECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence            999999998889999999999999998765  5899999999997

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.69  E-value=2e-16  Score=125.05  Aligned_cols=97  Identities=10%  Similarity=0.006  Sum_probs=82.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||||||+|.++..+++..+ .+|+++|+|+.+++.++++.... ....++.+..+|+..++   ++||+|++..
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~---~~fD~v~~~~  137 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANS-ENLRSKRVLLAGWEQFD---EPVDRIVSIG  137 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTC-CCCSCEEEEESCGGGCC---CCCSEEEEES
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhc-CCCCCeEEEECChhhCC---CCeeEEEEeC
Confidence            4677999999999999999985432 59999999999999999887541 12346889999988775   7899999999


Q ss_pred             cccCc--CChHHHHHHHHhccCCC
Q 029554          170 GLHWT--NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~--~d~~~~l~~i~r~Lkpg  191 (191)
                      +++|+  +++..++.++.++||||
T Consensus       138 ~l~~~~~~~~~~~l~~~~~~Lkpg  161 (287)
T 1kpg_A          138 AFEHFGHERYDAFFSLAHRLLPAD  161 (287)
T ss_dssp             CGGGTCTTTHHHHHHHHHHHSCTT
T ss_pred             chhhcChHHHHHHHHHHHHhcCCC
Confidence            99999  68899999999999997

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.69  E-value=2.2e-17  Score=120.82  Aligned_cols=97  Identities=16%  Similarity=0.093  Sum_probs=83.6

Q ss_pred             HHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCC
Q 029554           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKES  160 (191)
Q Consensus        81 l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~  160 (191)
                      +++.+.  ..++.+|||+|||+|.++..+.+.+  .+++++|+|+.+++.++++.       .++.+..+|   ++++++
T Consensus         9 ~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~-------~~v~~~~~d---~~~~~~   74 (170)
T 3i9f_A            9 YLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEKF-------DSVITLSDP---KEIPDN   74 (170)
T ss_dssp             THHHHH--SSCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHHC-------TTSEEESSG---GGSCTT
T ss_pred             HHHhcC--cCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHhC-------CCcEEEeCC---CCCCCC
Confidence            444444  3466799999999999999999887  59999999999999998763       247888888   667788


Q ss_pred             CcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          161 SLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       161 ~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +||+|+++.+++|++++..+++++.++||||
T Consensus        75 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg  105 (170)
T 3i9f_A           75 SVDFILFANSFHDMDDKQHVISEVKRILKDD  105 (170)
T ss_dssp             CEEEEEEESCSTTCSCHHHHHHHHHHHEEEE
T ss_pred             ceEEEEEccchhcccCHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999985

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.69  E-value=3.2e-16  Score=123.05  Aligned_cols=111  Identities=9%  Similarity=0.055  Sum_probs=88.1

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChh------HHHHHHHhhhhccCCCCceeeEec
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYD------MLKLCKDAQQDAHNDNIETCFVVG  150 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~------~l~~a~~~~~~~~~~~~~~~~~~~  150 (191)
                      ...+++.+.  ..++.+|||||||+|.++..+++. ++..+|+++|+|+.      +++.++++.... ....++.+.++
T Consensus        32 ~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~-~~~~~v~~~~~  108 (275)
T 3bkx_A           32 RLAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG-PLGDRLTVHFN  108 (275)
T ss_dssp             HHHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS-TTGGGEEEECS
T ss_pred             HHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhc-CCCCceEEEEC
Confidence            344555554  357789999999999999999887 46689999999997      999999887541 12246899999


Q ss_pred             C---CCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          151 D---EEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       151 d---~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |   ...+|+++++||+|+++.+++|++++..++..+.++++||
T Consensus       109 d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~g  152 (275)
T 3bkx_A          109 TNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVC  152 (275)
T ss_dssp             CCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTC
T ss_pred             ChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCC
Confidence            8   4456777889999999999999999988777777777765

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.69  E-value=2.1e-17  Score=127.47  Aligned_cols=98  Identities=12%  Similarity=0.068  Sum_probs=79.9

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC--CCCCCCcceEEe
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL--PLKESSLDLAIS  167 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l--~~~~~~fDlVis  167 (191)
                      .++.+|||||||+|.++..+++.+ ..+|+++|+|+.|++.++++...   ...++.++++|.+.+  ++++++||+|++
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  134 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPR---QTHKVIPLKGLWEDVAPTLPDGHFDGILY  134 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGG---CSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcC-CCeEEEEcCCHHHHHHHHHHHHh---cCCCeEEEecCHHHhhcccCCCceEEEEE
Confidence            467799999999999999997754 35899999999999999998754   336789999998877  788899999999


Q ss_pred             -CCccc----CcCChHHHHHHHHhccCCC
Q 029554          168 -CLGLH----WTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 -~~~l~----~~~d~~~~l~~i~r~Lkpg  191 (191)
                       .++++    +..+...++.++.++||||
T Consensus       135 d~~~~~~~~~~~~~~~~~l~~~~r~Lkpg  163 (236)
T 1zx0_A          135 DTYPLSEETWHTHQFNFIKNHAFRLLKPG  163 (236)
T ss_dssp             CCCCCBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred             CCcccchhhhhhhhHHHHHHHHHHhcCCC
Confidence             66541    1223447799999999986

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.68  E-value=2.2e-16  Score=124.84  Aligned_cols=104  Identities=13%  Similarity=0.136  Sum_probs=87.7

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE  159 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~  159 (191)
                      .+++.+..  .++.+|||+|||+|.++..++..+  .+|+++|+|+.+++.++++...  . ..++.+.++|+..+++ +
T Consensus       111 ~~~~~~~~--~~~~~vLD~GcG~G~~~~~l~~~g--~~v~~vD~s~~~~~~a~~~~~~--~-~~~~~~~~~d~~~~~~-~  182 (286)
T 3m70_A          111 DVVDAAKI--ISPCKVLDLGCGQGRNSLYLSLLG--YDVTSWDHNENSIAFLNETKEK--E-NLNISTALYDINAANI-Q  182 (286)
T ss_dssp             HHHHHHHH--SCSCEEEEESCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH--T-TCCEEEEECCGGGCCC-C
T ss_pred             HHHHHhhc--cCCCcEEEECCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHH--c-CCceEEEEeccccccc-c
Confidence            34444443  367899999999999999999886  7999999999999999998765  2 2278999999988876 7


Q ss_pred             CCcceEEeCCcccCcCC--hHHHHHHHHhccCCC
Q 029554          160 SSLDLAISCLGLHWTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       160 ~~fDlVis~~~l~~~~d--~~~~l~~i~r~Lkpg  191 (191)
                      ++||+|+++.+++|+++  ...++.++.++|+||
T Consensus       183 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  216 (286)
T 3m70_A          183 ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVG  216 (286)
T ss_dssp             SCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEE
T ss_pred             CCccEEEEccchhhCCHHHHHHHHHHHHHhcCCC
Confidence            89999999999999954  568999999999986

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.68  E-value=5.3e-17  Score=130.03  Aligned_cols=100  Identities=9%  Similarity=0.023  Sum_probs=75.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCC----CCceeeEecCC------CCC--CCC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND----NIETCFVVGDE------EFL--PLK  158 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~----~~~~~~~~~d~------~~l--~~~  158 (191)
                      ++.+|||||||+|..+..+...+ ..+|+|+|+|+.|++.|+++.......    ...+.+.+.|+      +.+  +++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            46799999999997665554432 378999999999999999987542111    01255777776      222  356


Q ss_pred             CCCcceEEeCCcccCc---CChHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWT---NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~---~d~~~~l~~i~r~Lkpg  191 (191)
                      +++||+|+|.+++||+   .+...+++++.++||||
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpG  162 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASG  162 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEE
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCC
Confidence            7899999999999985   46789999999999996

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.67  E-value=3.2e-17  Score=130.53  Aligned_cols=101  Identities=13%  Similarity=0.197  Sum_probs=83.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCC-----------------------------
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND-----------------------------  141 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-----------------------------  141 (191)
                      ++.+|||||||+|.++..++..++..+|+|+|+|+.|++.|+++.......                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            577999999999999999999876789999999999999999876431100                             


Q ss_pred             ---------------------------CCceeeEecCCCCCC-----CCCCCcceEEeCCcccCcC------ChHHHHHH
Q 029554          142 ---------------------------NIETCFVVGDEEFLP-----LKESSLDLAISCLGLHWTN------DLPGAMIQ  183 (191)
Q Consensus       142 ---------------------------~~~~~~~~~d~~~l~-----~~~~~fDlVis~~~l~~~~------d~~~~l~~  183 (191)
                                                 ..++.+.++|+...+     +.+++||+|+|..+++|+.      ++..++++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                       046899999977543     5678999999999998875      77889999


Q ss_pred             HHhccCCC
Q 029554          184 VSIFLLPD  191 (191)
Q Consensus       184 i~r~Lkpg  191 (191)
                      +.++|+||
T Consensus       206 ~~~~LkpG  213 (292)
T 3g07_A          206 IYRHLRPG  213 (292)
T ss_dssp             HHHHEEEE
T ss_pred             HHHHhCCC
Confidence            99999986

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.67  E-value=2e-16  Score=126.50  Aligned_cols=101  Identities=12%  Similarity=-0.098  Sum_probs=86.5

Q ss_pred             ccCCCeEEEEcCCccHHHHHHh-hcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEe
Q 029554           89 RKTFPTALCLGGSLEAVRRLLR-GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAIS  167 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~-~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis  167 (191)
                      ..++.+|||+|||+|..+..++ ...+..+|+++|+|+.+++.++++.... ....++.++++|+..++++ ++||+|++
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~-~~fD~v~~  193 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGH-ALAGQITLHRQDAWKLDTR-EGYDLLTS  193 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTS-TTGGGEEEEECCGGGCCCC-SCEEEEEC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhc-CCCCceEEEECchhcCCcc-CCeEEEEE
Confidence            3567899999999999999985 4456689999999999999999987541 1233589999999998877 89999999


Q ss_pred             CCcccCcCChHH---HHHHHHhccCCC
Q 029554          168 CLGLHWTNDLPG---AMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d~~~---~l~~i~r~Lkpg  191 (191)
                      +.+++|++++..   +++++.++||||
T Consensus       194 ~~~~~~~~~~~~~~~~l~~~~~~Lkpg  220 (305)
T 3ocj_A          194 NGLNIYEPDDARVTELYRRFWQALKPG  220 (305)
T ss_dssp             CSSGGGCCCHHHHHHHHHHHHHHEEEE
T ss_pred             CChhhhcCCHHHHHHHHHHHHHhcCCC
Confidence            999999988876   799999999986

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.67  E-value=1.2e-15  Score=114.84  Aligned_cols=110  Identities=11%  Similarity=-0.058  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      +++...++..+.  ..++.+|||+|||+|.++..+++.++..+|+++|+|+.+++.++++....  ...++.++.+|...
T Consensus        26 ~~i~~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~v~~~~~d~~~  101 (204)
T 3e05_A           26 QEVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKF--VARNVTLVEAFAPE  101 (204)
T ss_dssp             HHHHHHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHH--TCTTEEEEECCTTT
T ss_pred             HHHHHHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--CCCcEEEEeCChhh
Confidence            344445555554  45678999999999999999999888899999999999999999887652  23568999999855


Q ss_pred             CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          155 LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .....++||+|+++.+++   +...++.++.++|+||
T Consensus       102 ~~~~~~~~D~i~~~~~~~---~~~~~l~~~~~~Lkpg  135 (204)
T 3e05_A          102 GLDDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSE  135 (204)
T ss_dssp             TCTTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTT
T ss_pred             hhhcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCC
Confidence            433346799999998876   7899999999999996

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.67  E-value=4.3e-16  Score=125.04  Aligned_cols=97  Identities=14%  Similarity=0.060  Sum_probs=83.1

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.++++.... ....++.+.++|+..++   ++||+|+++.
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~---~~fD~v~~~~  163 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASI-DTNRSRQVLLQGWEDFA---EPVDRIVSIE  163 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTS-CCSSCEEEEESCGGGCC---CCCSEEEEES
T ss_pred             CCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhc-CCCCceEEEECChHHCC---CCcCEEEEeC
Confidence            467799999999999999998773 269999999999999999887541 12245889999988775   7899999999


Q ss_pred             cccCc--CChHHHHHHHHhccCCC
Q 029554          170 GLHWT--NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~--~d~~~~l~~i~r~Lkpg  191 (191)
                      +++|+  +++..++.++.++||||
T Consensus       164 ~l~~~~~~~~~~~l~~~~~~Lkpg  187 (318)
T 2fk8_A          164 AFEHFGHENYDDFFKRCFNIMPAD  187 (318)
T ss_dssp             CGGGTCGGGHHHHHHHHHHHSCTT
T ss_pred             hHHhcCHHHHHHHHHHHHHhcCCC
Confidence            99999  68899999999999997

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.67  E-value=2.2e-16  Score=120.06  Aligned_cols=101  Identities=17%  Similarity=0.179  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC--
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL--  155 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l--  155 (191)
                      ...++..+.  ..++.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.++++        .++.+...|...+  
T Consensus        41 ~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~  108 (227)
T 3e8s_A           41 DQAILLAIL--GRQPERVLDLGCGEGWLLRALADRG--IEAVGVDGDRTLVDAARAA--------GAGEVHLASYAQLAE  108 (227)
T ss_dssp             HHHHHHHHH--HTCCSEEEEETCTTCHHHHHHHTTT--CEEEEEESCHHHHHHHHHT--------CSSCEEECCHHHHHT
T ss_pred             cHHHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHCC--CEEEEEcCCHHHHHHHHHh--------cccccchhhHHhhcc
Confidence            345555555  3456899999999999999999886  7999999999999999876        2256677775544  


Q ss_pred             -CCC-CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          156 -PLK-ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       156 -~~~-~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                       ++. +++||+|+++.+++ ..++..+++++.++||||
T Consensus       109 ~~~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pg  145 (227)
T 3e8s_A          109 AKVPVGKDYDLICANFALL-HQDIIELLSAMRTLLVPG  145 (227)
T ss_dssp             TCSCCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEE
T ss_pred             cccccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCC
Confidence             433 34599999999999 889999999999999986

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.67  E-value=2.5e-16  Score=118.89  Aligned_cols=98  Identities=17%  Similarity=0.082  Sum_probs=83.9

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..++.+|||+|||+|.++..+.+.++ .+++++|+|+.+++.++++...    ..++.+.++|+..+++++++||+|+++
T Consensus        40 ~~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~  114 (215)
T 2pxx_A           40 LRPEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAH----VPQLRWETMDVRKLDFPSASFDVVLEK  114 (215)
T ss_dssp             CCTTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTT----CTTCEEEECCTTSCCSCSSCEEEEEEE
T ss_pred             cCCCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhccc----CCCcEEEEcchhcCCCCCCcccEEEEC
Confidence            35678999999999999999988763 3899999999999999987642    346889999998888888999999999


Q ss_pred             CcccCcC---------------ChHHHHHHHHhccCCC
Q 029554          169 LGLHWTN---------------DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~---------------d~~~~l~~i~r~Lkpg  191 (191)
                      .+++++.               +...++.++.++||||
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  152 (215)
T 2pxx_A          115 GTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG  152 (215)
T ss_dssp             SHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE
T ss_pred             cchhhhccccccccccccchhHHHHHHHHHHHHhCcCC
Confidence            9887654               5688999999999986

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.66  E-value=4.6e-16  Score=123.16  Aligned_cols=100  Identities=16%  Similarity=0.126  Sum_probs=84.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC-CCCCcceEEeC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-KESSLDLAISC  168 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~fDlVis~  168 (191)
                      .++.+|||+|||+|.++..+...+ ..+|+++|+|+.+++.++++.... ....++.++++|+..+++ ++++||+|+++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  140 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNM-KRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  140 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTS-CCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhc-CCCccEEEEECCccccccCCCCCcCEEEEC
Confidence            467899999999999998887764 459999999999999999887541 122468999999998887 57899999999


Q ss_pred             CcccC----cCChHHHHHHHHhccCCC
Q 029554          169 LGLHW----TNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~----~~d~~~~l~~i~r~Lkpg  191 (191)
                      .++||    ..++..++.++.++||||
T Consensus       141 ~~l~~~~~~~~~~~~~l~~~~~~Lkpg  167 (298)
T 1ri5_A          141 FSFHYAFSTSESLDIAQRNIARHLRPG  167 (298)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred             chhhhhcCCHHHHHHHHHHHHHhcCCC
Confidence            99988    456788999999999986

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.66  E-value=4.3e-16  Score=119.58  Aligned_cols=92  Identities=14%  Similarity=0.138  Sum_probs=79.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..+.+.+  .+++++|+|+.|++.++++..       ++.+.++|+..+++ +++||+|+|..
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~-------~~~~~~~d~~~~~~-~~~~D~v~~~~  108 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRLP-------DATLHQGDMRDFRL-GRKFSAVVSMF  108 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHCT-------TCEEEECCTTTCCC-SSCEEEEEECT
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhCC-------CCEEEECCHHHccc-CCCCcEEEEcC
Confidence            467799999999999999999887  589999999999999987653       37889999988876 67899999654


Q ss_pred             -cccCcC---ChHHHHHHHHhccCCC
Q 029554          170 -GLHWTN---DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 -~l~~~~---d~~~~l~~i~r~Lkpg  191 (191)
                       +++|+.   +...+++++.++|+||
T Consensus       109 ~~~~~~~~~~~~~~~l~~~~~~L~pg  134 (239)
T 3bxo_A          109 SSVGYLKTTEELGAAVASFAEHLEPG  134 (239)
T ss_dssp             TGGGGCCSHHHHHHHHHHHHHTEEEE
T ss_pred             chHhhcCCHHHHHHHHHHHHHhcCCC
Confidence             899984   4578999999999986

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.66  E-value=7.2e-16  Score=113.24  Aligned_cols=111  Identities=13%  Similarity=-0.004  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC
Q 029554           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE  152 (191)
Q Consensus        73 ~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~  152 (191)
                      ..+++...++..+.  ..++.+|||+|||+|.++..++...+..+|+++|+|+.+++.++++.... +...++ ++.+|.
T Consensus         9 t~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~-~~~~d~   84 (178)
T 3hm2_A            9 TKQHVRALAISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINL-GVSDRI-AVQQGA   84 (178)
T ss_dssp             HHHHHHHHHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTT-TCTTSE-EEECCT
T ss_pred             cHHHHHHHHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHh-CCCCCE-EEecch
Confidence            34555566666665  45677999999999999999998877799999999999999999887641 122256 777776


Q ss_pred             C-CCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          153 E-FLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       153 ~-~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      . .++..+++||+|+++.+++|    ..++.++.++|+||
T Consensus        85 ~~~~~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~g  120 (178)
T 3hm2_A           85 PRAFDDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVG  120 (178)
T ss_dssp             TGGGGGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTT
T ss_pred             HhhhhccCCCCCEEEECCcccH----HHHHHHHHHhcCCC
Confidence            4 44433378999999999987    67899999999996

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.66  E-value=1.2e-16  Score=125.25  Aligned_cols=101  Identities=16%  Similarity=0.051  Sum_probs=77.5

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~  157 (191)
                      ...+++.+.  ..++.+|||+|||+|.++..|++.+  .+|+++|+|+.|++.++++...   .     .+..+++.++.
T Consensus        34 ~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~g--~~V~gvD~S~~ml~~Ar~~~~~---~-----~v~~~~~~~~~  101 (261)
T 3iv6_A           34 RENDIFLEN--IVPGSTVAVIGASTRFLIEKALERG--ASVTVFDFSQRMCDDLAEALAD---R-----CVTIDLLDITA  101 (261)
T ss_dssp             HHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTSS---S-----CCEEEECCTTS
T ss_pred             HHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHh---c-----cceeeeeeccc
Confidence            345555554  4467899999999999999999887  8999999999999999988753   1     12233222221


Q ss_pred             -----CCCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          158 -----KESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       158 -----~~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                           .+++||+|+++.++||+.  +...++.++.++| ||
T Consensus       102 ~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PG  141 (261)
T 3iv6_A          102 EIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GS  141 (261)
T ss_dssp             CCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TT
T ss_pred             ccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cC
Confidence                 247899999999999874  5667999999999 86

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.66  E-value=1.1e-16  Score=123.82  Aligned_cols=99  Identities=10%  Similarity=-0.000  Sum_probs=82.2

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC--CCCCCCCcceEE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF--LPLKESSLDLAI  166 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~--l~~~~~~fDlVi  166 (191)
                      ..++.+|||||||+|..+..+++..+ .+++++|+|+.|++.|+++...   ...++.++.+|.+.  .++++++||.|+
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~FD~i~  133 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPR---QTHKVIPLKGLWEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGG---CSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhh---CCCceEEEeehHHhhcccccccCCceEE
Confidence            34788999999999999999987653 6899999999999999988764   44567888888653  356788899997


Q ss_pred             e-----CCcccCcCChHHHHHHHHhccCCC
Q 029554          167 S-----CLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s-----~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .     ...++|..|+..++.++.|+||||
T Consensus       134 ~D~~~~~~~~~~~~~~~~~~~e~~rvLkPG  163 (236)
T 3orh_A          134 YDTYPLSEETWHTHQFNFIKNHAFRLLKPG  163 (236)
T ss_dssp             ECCCCCBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred             EeeeecccchhhhcchhhhhhhhhheeCCC
Confidence            4     456778889999999999999996

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.66  E-value=2e-16  Score=125.49  Aligned_cols=113  Identities=15%  Similarity=0.059  Sum_probs=80.0

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCC--------------C-
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND--------------N-  142 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--------------~-  142 (191)
                      ...+...+.....++.+|||||||+|.....+... +..+|+|+|+|+.|++.++++.......              . 
T Consensus        58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~  136 (289)
T 2g72_A           58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGK  136 (289)
T ss_dssp             HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCS
T ss_pred             HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCc
Confidence            34455555422236679999999999955444332 2379999999999999998865320000              0 


Q ss_pred             -------------CceeeEecCCCC-CCC-----CCCCcceEEeCCcccC----cCChHHHHHHHHhccCCC
Q 029554          143 -------------IETCFVVGDEEF-LPL-----KESSLDLAISCLGLHW----TNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       143 -------------~~~~~~~~d~~~-l~~-----~~~~fDlVis~~~l~~----~~d~~~~l~~i~r~Lkpg  191 (191)
                                   ..+.++.+|+.. +|+     ++++||+|+++++++|    ++++..+++++.++||||
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpG  208 (289)
T 2g72_A          137 GECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG  208 (289)
T ss_dssp             CCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred             ccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCC
Confidence                         013456668776 553     3467999999999999    667899999999999996

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.65  E-value=2.5e-16  Score=121.78  Aligned_cols=96  Identities=10%  Similarity=-0.018  Sum_probs=82.6

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC-----CCcc
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE-----SSLD  163 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~-----~~fD  163 (191)
                      ..++.+|||+|||+|.++..+++.+  .+|+++|+|+.|++.++++..     ..++.++++|+..+++..     ..||
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~--~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~d  126 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFF--PRVIGLDVSKSALEIAAKENT-----AANISYRLLDGLVPEQAAQIHSEIGDA  126 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHS--SCEEEEESCHHHHHHHHHHSC-----CTTEEEEECCTTCHHHHHHHHHHHCSC
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhC--CCEEEEECCHHHHHHHHHhCc-----ccCceEEECcccccccccccccccCcc
Confidence            3567799999999999999999988  489999999999999988762     236899999988765322     2499


Q ss_pred             eEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          164 LAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       164 lVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      +|+++.++||++  +...+++++.++||||
T Consensus       127 ~v~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  156 (245)
T 3ggd_A          127 NIYMRTGFHHIPVEKRELLGQSLRILLGKQ  156 (245)
T ss_dssp             EEEEESSSTTSCGGGHHHHHHHHHHHHTTT
T ss_pred             EEEEcchhhcCCHHHHHHHHHHHHHHcCCC
Confidence            999999999998  8899999999999996

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.65  E-value=3.9e-16  Score=118.96  Aligned_cols=86  Identities=20%  Similarity=0.245  Sum_probs=77.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ++.+|||+|||+|.++..+...      +++|+|+.+++.++++         ++.+.++|+..+++++++||+|+++.+
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~---------~~~~~~~d~~~~~~~~~~fD~v~~~~~  111 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR---------GVFVLKGTAENLPLKDESFDFALMVTT  111 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT---------TCEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc---------CCEEEEcccccCCCCCCCeeEEEEcch
Confidence            3779999999999999988663      9999999999999765         378889999888888889999999999


Q ss_pred             ccCcCChHHHHHHHHhccCCC
Q 029554          171 LHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++|++++..++.++.++|+||
T Consensus       112 l~~~~~~~~~l~~~~~~L~pg  132 (219)
T 1vlm_A          112 ICFVDDPERALKEAYRILKKG  132 (219)
T ss_dssp             GGGSSCHHHHHHHHHHHEEEE
T ss_pred             HhhccCHHHHHHHHHHHcCCC
Confidence            999999999999999999986

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.65  E-value=1.2e-15  Score=115.99  Aligned_cols=100  Identities=12%  Similarity=0.076  Sum_probs=84.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceEEe
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLAIS  167 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlVis  167 (191)
                      .++.+|||+|||+|.++..++...|..+++|+|+|+.+++.++++...  ....++.++++|+..++  +++++||+|++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~  117 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE--VGVPNIKLLWVDGSDLTDYFEDGEIDRLYL  117 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--HCCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHH--cCCCCEEEEeCCHHHHHhhcCCCCCCEEEE
Confidence            356789999999999999999888778999999999999999988765  22357999999988776  67789999999


Q ss_pred             CCcccCcC--------ChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTN--------DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~--------d~~~~l~~i~r~Lkpg  191 (191)
                      ++...|..        ....++.++.++|+||
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  149 (214)
T 1yzh_A          118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPEN  149 (214)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT
T ss_pred             ECCCCccccchhhhccCCHHHHHHHHHHcCCC
Confidence            98766543        2368999999999997

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.65  E-value=6.9e-16  Score=115.82  Aligned_cols=95  Identities=16%  Similarity=0.058  Sum_probs=80.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ++ +|||+|||+|.++..+++.+  .+|+++|+|+.+++.++++...   ...++.+.++|+..+++++++||+|++++.
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  103 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLG--YEVTAVDQSSVGLAKAKQLAQE---KGVKITTVQSNLADFDIVADAWEGIVSIFC  103 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTT--CEEEEECSSHHHHHHHHHHHHH---HTCCEEEECCBTTTBSCCTTTCSEEEEECC
T ss_pred             CC-CEEEECCCCCHhHHHHHhCC--CeEEEEECCHHHHHHHHHHHHh---cCCceEEEEcChhhcCCCcCCccEEEEEhh
Confidence            44 99999999999999999876  7999999999999999988754   122688999999888888889999999754


Q ss_pred             ccCcCChHHHHHHHHhccCCC
Q 029554          171 LHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ..+..++..++.++.++|+||
T Consensus       104 ~~~~~~~~~~l~~~~~~L~pg  124 (202)
T 2kw5_A          104 HLPSSLRQQLYPKVYQGLKPG  124 (202)
T ss_dssp             CCCHHHHHHHHHHHHTTCCSS
T ss_pred             cCCHHHHHHHHHHHHHhcCCC
Confidence            333357789999999999997

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.64  E-value=4.1e-16  Score=115.62  Aligned_cols=99  Identities=16%  Similarity=0.045  Sum_probs=77.1

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-CCCCCcceEEe
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKESSLDLAIS  167 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-~~~~~fDlVis  167 (191)
                      ..++.+|||+|||+|.++..+++.+  .+|+++|+|+.|++.++++...  ....++.+++.+.+.++ +.+++||+|++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~~--~~v~~vD~s~~~l~~a~~~~~~--~~~~~v~~~~~~~~~l~~~~~~~fD~v~~   95 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGLS--KKVYAFDVQEQALGKTSQRLSD--LGIENTELILDGHENLDHYVREPIRAAIF   95 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHH--HTCCCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHH--cCCCcEEEEeCcHHHHHhhccCCcCEEEE
Confidence            3467899999999999999999875  8999999999999999998865  22256888887776643 44678999998


Q ss_pred             CCc-ccC--------cCChHHHHHHHHhccCCC
Q 029554          168 CLG-LHW--------TNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~-l~~--------~~d~~~~l~~i~r~Lkpg  191 (191)
                      +.. +++        ..+...++.++.++||||
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  128 (185)
T 3mti_A           96 NLGYLPSADKSVITKPHTTLEAIEKILDRLEVG  128 (185)
T ss_dssp             EEC-----------CHHHHHHHHHHHHHHEEEE
T ss_pred             eCCCCCCcchhcccChhhHHHHHHHHHHhcCCC
Confidence            843 332        134457889999999986

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.64  E-value=1e-15  Score=114.06  Aligned_cols=99  Identities=11%  Similarity=0.033  Sum_probs=82.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceEEe
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLAIS  167 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlVis  167 (191)
                      .++.+|||+|||+|.++..++..+ ..+|+++|+|+.|++.++++...  ....++.++++|+..++  +++++||+|++
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~  119 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRG-AASVLFVESDQRSAAVIARNIEA--LGLSGATLRRGAVAAVVAAGTTSPVDLVLA  119 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEECCHHHHHHHHHHHHH--HTCSCEEEEESCHHHHHHHCCSSCCSEEEE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHH--cCCCceEEEEccHHHHHhhccCCCccEEEE
Confidence            467799999999999999777653 46899999999999999998765  22257899999977543  34688999999


Q ss_pred             CCcccCc-CChHHHHHHHHh--ccCCC
Q 029554          168 CLGLHWT-NDLPGAMIQVSI--FLLPD  191 (191)
Q Consensus       168 ~~~l~~~-~d~~~~l~~i~r--~Lkpg  191 (191)
                      +..+++. ++....+.++.+  +|+||
T Consensus       120 ~~p~~~~~~~~~~~l~~~~~~~~L~pg  146 (189)
T 3p9n_A          120 DPPYNVDSADVDAILAALGTNGWTREG  146 (189)
T ss_dssp             CCCTTSCHHHHHHHHHHHHHSSSCCTT
T ss_pred             CCCCCcchhhHHHHHHHHHhcCccCCC
Confidence            9988875 678899999999  99997

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.64  E-value=1.2e-16  Score=125.40  Aligned_cols=101  Identities=12%  Similarity=0.101  Sum_probs=75.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCC---------------------------C
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND---------------------------N  142 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~---------------------------~  142 (191)
                      .++.+|||||||+|.....++..+ ..+|+|+|+|+.|++.+++.+......                           .
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  132 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence            356689999999998877666554 357999999999999998865431000                           0


Q ss_pred             Ccee-eEecCCCC-CCC---CCCCcceEEeCCcccCc----CChHHHHHHHHhccCCC
Q 029554          143 IETC-FVVGDEEF-LPL---KESSLDLAISCLGLHWT----NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       143 ~~~~-~~~~d~~~-l~~---~~~~fDlVis~~~l~~~----~d~~~~l~~i~r~Lkpg  191 (191)
                      .++. ++++|+.. .|+   ..++||+|+++++|||+    ++...+++++.++||||
T Consensus       133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPG  190 (263)
T 2a14_A          133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPG  190 (263)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred             hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCC
Confidence            1122 78888776 343   25789999999999986    35578999999999996

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.64  E-value=9.2e-16  Score=118.02  Aligned_cols=94  Identities=18%  Similarity=0.173  Sum_probs=81.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC-
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL-  169 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~-  169 (191)
                      ++.+|||+|||+|.++..+++.   .+++++|+|+.+++.++++...   ...++.+.++|+..++++ ++||+|+++. 
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~  105 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAME---TNRHVDFWVQDMRELELP-EPVDAITILCD  105 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHH---TTCCCEEEECCGGGCCCS-SCEEEEEECTT
T ss_pred             CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhh---cCCceEEEEcChhhcCCC-CCcCEEEEeCC
Confidence            5689999999999999999875   6899999999999999988754   224688999998888765 7899999987 


Q ss_pred             cccCc---CChHHHHHHHHhccCCC
Q 029554          170 GLHWT---NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~---~d~~~~l~~i~r~Lkpg  191 (191)
                      +++|+   .++..+++++.++|+||
T Consensus       106 ~~~~~~~~~~~~~~l~~~~~~L~pg  130 (243)
T 3d2l_A          106 SLNYLQTEADVKQTFDSAARLLTDG  130 (243)
T ss_dssp             GGGGCCSHHHHHHHHHHHHHHEEEE
T ss_pred             chhhcCCHHHHHHHHHHHHHhcCCC
Confidence            89998   45678899999999986

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.64  E-value=2.9e-16  Score=125.05  Aligned_cols=105  Identities=15%  Similarity=0.156  Sum_probs=85.3

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC----CceeeEecCCC
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN----IETCFVVGDEE  153 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~----~~~~~~~~d~~  153 (191)
                      ...++..+.   ....+|||||||+|.++..+++.+  .+|+++|+|+.|++.++++...   ..    .++.++++|+.
T Consensus        72 ~~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~v~~~~~d~~  143 (299)
T 3g2m_A           72 AREFATRTG---PVSGPVLELAAGMGRLTFPFLDLG--WEVTALELSTSVLAAFRKRLAE---APADVRDRCTLVQGDMS  143 (299)
T ss_dssp             HHHHHHHHC---CCCSCEEEETCTTTTTHHHHHTTT--CCEEEEESCHHHHHHHHHHHHT---SCHHHHTTEEEEECBTT
T ss_pred             HHHHHHhhC---CCCCcEEEEeccCCHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHhh---cccccccceEEEeCchh
Confidence            334444443   244599999999999999999886  7899999999999999998754   22    56899999999


Q ss_pred             CCCCCCCCcceEEeC-CcccCcC--ChHHHHHHHHhccCCC
Q 029554          154 FLPLKESSLDLAISC-LGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       154 ~l~~~~~~fDlVis~-~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      .+++ +++||+|++. .+++|++  +...+++++.++||||
T Consensus       144 ~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pg  183 (299)
T 3g2m_A          144 AFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPG  183 (299)
T ss_dssp             BCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEE
T ss_pred             cCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCC
Confidence            9887 6899999965 5677775  4688999999999986

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.63  E-value=8.1e-16  Score=117.08  Aligned_cols=91  Identities=20%  Similarity=0.238  Sum_probs=80.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC--CCCCCCCcceEEe
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF--LPLKESSLDLAIS  167 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~--l~~~~~~fDlVis  167 (191)
                      .++.+|||+|||+|.++..+.+.+  .+++++|+|+.+++.++++.         ..+..+|+..  .++++++||+|++
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~~~~~~~~~~~~~---------~~~~~~d~~~~~~~~~~~~fD~v~~   99 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG--TRVSGIEAFPEAAEQAKEKL---------DHVVLGDIETMDMPYEEEQFDCVIF   99 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT--CEEEEEESSHHHHHHHHTTS---------SEEEESCTTTCCCCSCTTCEEEEEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHhC---------CcEEEcchhhcCCCCCCCccCEEEE
Confidence            467799999999999999998874  89999999999999987654         3577888765  6677789999999


Q ss_pred             CCcccCcCChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +.+++|+.++..++.++.++|+||
T Consensus       100 ~~~l~~~~~~~~~l~~~~~~L~~g  123 (230)
T 3cc8_A          100 GDVLEHLFDPWAVIEKVKPYIKQN  123 (230)
T ss_dssp             ESCGGGSSCHHHHHHHTGGGEEEE
T ss_pred             CChhhhcCCHHHHHHHHHHHcCCC
Confidence            999999999999999999999985

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.63  E-value=9.1e-16  Score=116.82  Aligned_cols=100  Identities=7%  Similarity=0.047  Sum_probs=84.0

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceEEe
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLAIS  167 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlVis  167 (191)
                      .+..+|||||||+|.++..++...|..+|+|+|+|+.+++.|+++...  ....++.++++|+..++  +++++||.|++
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~--~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~  114 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD--SEAQNVKLLNIDADTLTDVFEPGEVKRVYL  114 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH--SCCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHH--cCCCCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence            356789999999999999999887778999999999999999988765  33456999999988765  67789999999


Q ss_pred             CCcccCcCC--------hHHHHHHHHhccCCC
Q 029554          168 CLGLHWTND--------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d--------~~~~l~~i~r~Lkpg  191 (191)
                      ++...|...        ...++.++.++||||
T Consensus       115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~Lkpg  146 (213)
T 2fca_A          115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG  146 (213)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred             ECCCCCcCccccccccCcHHHHHHHHHHcCCC
Confidence            877665532        367899999999997

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.63  E-value=6e-17  Score=134.72  Aligned_cols=96  Identities=13%  Similarity=0.119  Sum_probs=78.1

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..+.+.+  .+|+|+|+|+.|++.++++..    ......+...+.+.+++++++||+|+++.
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~~~~~~l~~~~~~fD~I~~~~  179 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREKGI----RVRTDFFEKATADDVRRTEGPANVIYAAN  179 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTTTC----CEECSCCSHHHHHHHHHHHCCEEEEEEES
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHcCC----CcceeeechhhHhhcccCCCCEEEEEECC
Confidence            467799999999999999999877  699999999999999986521    11111222334445666678999999999


Q ss_pred             cccCcCChHHHHHHHHhccCCC
Q 029554          170 GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++|++|+..+++++.++||||
T Consensus       180 vl~h~~d~~~~l~~~~r~Lkpg  201 (416)
T 4e2x_A          180 TLCHIPYVQSVLEGVDALLAPD  201 (416)
T ss_dssp             CGGGCTTHHHHHHHHHHHEEEE
T ss_pred             hHHhcCCHHHHHHHHHHHcCCC
Confidence            9999999999999999999986

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.62  E-value=1.8e-15  Score=112.29  Aligned_cols=93  Identities=19%  Similarity=0.199  Sum_probs=81.0

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC-
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC-  168 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~-  168 (191)
                      .++.+|||+|||+|.++..+...+  .+++++|+|+.+++.++++..       ++.+...|+..+++++++||+|+++ 
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~-------~~~~~~~d~~~~~~~~~~~D~i~~~~  115 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQG--HDVLGTDLDPILIDYAKQDFP-------EARWVVGDLSVDQISETDFDLIVSAG  115 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHCT-------TSEEEECCTTTSCCCCCCEEEEEECC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCC--CcEEEEcCCHHHHHHHHHhCC-------CCcEEEcccccCCCCCCceeEEEECC
Confidence            367799999999999999998876  799999999999999988753       2788999998888888899999998 


Q ss_pred             CcccCcC--ChHHHHHHHHhccCCC
Q 029554          169 LGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      .+++|+.  +...++.++.++|+||
T Consensus       116 ~~~~~~~~~~~~~~l~~~~~~l~~~  140 (195)
T 3cgg_A          116 NVMGFLAEDGREPALANIHRALGAD  140 (195)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             cHHhhcChHHHHHHHHHHHHHhCCC
Confidence            6788873  4578999999999985

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.62  E-value=4.2e-16  Score=119.24  Aligned_cols=100  Identities=11%  Similarity=0.076  Sum_probs=83.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-C--CCCCCcceEE
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-P--LKESSLDLAI  166 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~--~~~~~fDlVi  166 (191)
                      ....+|||||||+|.++..++..+|...|+|+|+|+.+++.++++...  ....++.++++|+..+ +  +++++||.|+
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~--~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~  110 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHE--EGLSNLRVMCHDAVEVLHKMIPDNSLRMVQ  110 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH--TTCSSEEEECSCHHHHHHHHSCTTCEEEEE
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHH--hCCCcEEEEECCHHHHHHHHcCCCChheEE
Confidence            356789999999999999999888888999999999999999988765  3445699999997763 3  6789999999


Q ss_pred             eCCcccCcCCh--------HHHHHHHHhccCCC
Q 029554          167 SCLGLHWTNDL--------PGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~~~d~--------~~~l~~i~r~Lkpg  191 (191)
                      +++...|....        ..++.++.++||||
T Consensus       111 ~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpG  143 (218)
T 3dxy_A          111 LFFPDPWHKARHNKRRIVQVPFAELVKSKLQLG  143 (218)
T ss_dssp             EESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEE
T ss_pred             EeCCCCccchhhhhhhhhhHHHHHHHHHHcCCC
Confidence            99877665432        26999999999986

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.62  E-value=3.7e-15  Score=118.38  Aligned_cols=96  Identities=10%  Similarity=0.112  Sum_probs=79.3

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..++.+|||||||+|..+..+....+..+|+++|+|+.|++.|+++....+ . .++.++++|...++  +++||+|++.
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~g-l-~~v~~v~gDa~~l~--d~~FDvV~~~  195 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLG-V-DGVNVITGDETVID--GLEFDVLMVA  195 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHT-C-CSEEEEESCGGGGG--GCCCSEEEEC
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcC-C-CCeEEEECchhhCC--CCCcCEEEEC
Confidence            357889999999999776554444345899999999999999999876522 2 67999999988775  6889999986


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ..   +++...+++++.++||||
T Consensus       196 a~---~~d~~~~l~el~r~LkPG  215 (298)
T 3fpf_A          196 AL---AEPKRRVFRNIHRYVDTE  215 (298)
T ss_dssp             TT---CSCHHHHHHHHHHHCCTT
T ss_pred             CC---ccCHHHHHHHHHHHcCCC
Confidence            55   578999999999999997

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.62  E-value=2.5e-16  Score=121.53  Aligned_cols=108  Identities=13%  Similarity=0.103  Sum_probs=88.4

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC-CceeeEecCCCCCC
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLP  156 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~d~~~l~  156 (191)
                      ...+...+.. ..++.+|||+|||+|.++..++..+  .+|+++|+|+.+++.++++...  ... .++.++++|+..++
T Consensus        66 ~~~l~~~~~~-~~~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~~~~d~~~~~  140 (241)
T 3gdh_A           66 AEHIAGRVSQ-SFKCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEV--YGIADKIEFICGDFLLLA  140 (241)
T ss_dssp             HHHHHHHHHH-HSCCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH--TTCGGGEEEEESCHHHHG
T ss_pred             HHHHHHHhhh-ccCCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHH--cCCCcCeEEEECChHHhc
Confidence            4444444443 2367899999999999999999887  8999999999999999988765  222 47999999987766


Q ss_pred             CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          157 LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                       ++++||+|+++..++|..+....+.++.++|+||
T Consensus       141 -~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pg  174 (241)
T 3gdh_A          141 -SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPD  174 (241)
T ss_dssp             -GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSC
T ss_pred             -ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCc
Confidence             5678999999999999887777778888999986

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.62  E-value=2.1e-15  Score=113.90  Aligned_cols=105  Identities=10%  Similarity=-0.036  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      ..+...+++.+.  ..++.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.++++...  ....++.+..+|...
T Consensus        63 ~~~~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~--~~v~~vD~~~~~~~~a~~~~~~--~~~~~v~~~~~d~~~  136 (210)
T 3lbf_A           63 PYMVARMTELLE--LTPQSRVLEIGTGSGYQTAILAHLV--QHVCSVERIKGLQWQARRRLKN--LDLHNVSTRHGDGWQ  136 (210)
T ss_dssp             HHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHHH--TTCCSEEEEESCGGG
T ss_pred             HHHHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHH--cCCCceEEEECCccc
Confidence            344555565554  4577899999999999999998875  8999999999999999998765  233468999999877


Q ss_pred             CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          155 LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ...++++||+|+++.+++|+.+      ++.++||||
T Consensus       137 ~~~~~~~~D~i~~~~~~~~~~~------~~~~~L~pg  167 (210)
T 3lbf_A          137 GWQARAPFDAIIVTAAPPEIPT------ALMTQLDEG  167 (210)
T ss_dssp             CCGGGCCEEEEEESSBCSSCCT------HHHHTEEEE
T ss_pred             CCccCCCccEEEEccchhhhhH------HHHHhcccC
Confidence            6656789999999999999975      578888875

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.62  E-value=1.8e-16  Score=117.94  Aligned_cols=97  Identities=8%  Similarity=0.005  Sum_probs=80.5

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCC-ceeeEecCCCCCCCCCCCcceEEeC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      .+..+|||+|||+|.++..+....|..+|+++|+|+.|++.+++++..  .... ++.+  .|.... .++++||+|++.
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~--~g~~~~v~~--~d~~~~-~~~~~~DvVLa~  122 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGK--LKTTIKYRF--LNKESD-VYKGTYDVVFLL  122 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHH--SCCSSEEEE--ECCHHH-HTTSEEEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh--cCCCccEEE--eccccc-CCCCCcChhhHh
Confidence            467899999999999999998888888999999999999999998865  2222 4544  565433 356889999999


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .++|++++....+.++.+.|+||
T Consensus       123 k~LHlL~~~~~al~~v~~~L~pg  145 (200)
T 3fzg_A          123 KMLPVLKQQDVNILDFLQLFHTQ  145 (200)
T ss_dssp             TCHHHHHHTTCCHHHHHHTCEEE
T ss_pred             hHHHhhhhhHHHHHHHHHHhCCC
Confidence            99999987788888999999985

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.62  E-value=3e-15  Score=110.94  Aligned_cols=108  Identities=16%  Similarity=0.065  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCc--eeeEecCCCC
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE--TCFVVGDEEF  154 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~--~~~~~~d~~~  154 (191)
                      ....+++.+.  ..++.+|||+|||+|.++..++..+  .+++++|+|+.+++.++++...  ....+  +.+..+|+..
T Consensus        40 ~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~--~~~~~~~~~~~~~d~~~  113 (194)
T 1dus_A           40 GTKILVENVV--VDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKL--NNLDNYDIRVVHSDLYE  113 (194)
T ss_dssp             HHHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHH--TTCTTSCEEEEECSTTT
T ss_pred             HHHHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHH--cCCCccceEEEECchhc
Confidence            3445555554  3467799999999999999998874  8999999999999999988764  22333  8899999776


Q ss_pred             CCCCCCCcceEEeCCcccC-cCChHHHHHHHHhccCCC
Q 029554          155 LPLKESSLDLAISCLGLHW-TNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 l~~~~~~fDlVis~~~l~~-~~d~~~~l~~i~r~Lkpg  191 (191)
                      . +++++||+|+++..++| ..+...++.++.++|+||
T Consensus       114 ~-~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~g  150 (194)
T 1dus_A          114 N-VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN  150 (194)
T ss_dssp             T-CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE
T ss_pred             c-cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCC
Confidence            3 34678999999999887 456788999999999985

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.61  E-value=1.1e-14  Score=110.08  Aligned_cols=105  Identities=12%  Similarity=0.008  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCC-ceeeEecCCCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF  154 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-~~~~~~~d~~~  154 (191)
                      .+...++..+.  ..++.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.++++...  .... ++.++.+|+..
T Consensus        42 ~~~~~~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~--~g~~~~v~~~~~d~~~  115 (204)
T 3njr_A           42 PMRALTLAALA--PRRGELLWDIGGGSGSVSVEWCLAG--GRAITIEPRADRIENIQKNIDT--YGLSPRMRAVQGTAPA  115 (204)
T ss_dssp             HHHHHHHHHHC--CCTTCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH--TTCTTTEEEEESCTTG
T ss_pred             HHHHHHHHhcC--CCCCCEEEEecCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHH--cCCCCCEEEEeCchhh
Confidence            34444555554  4567899999999999999998875  8999999999999999988765  2333 68999999876


Q ss_pred             CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          155 LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .......||+|+++.++    +.. ++.++.++||||
T Consensus       116 ~~~~~~~~D~v~~~~~~----~~~-~l~~~~~~Lkpg  147 (204)
T 3njr_A          116 ALADLPLPEAVFIGGGG----SQA-LYDRLWEWLAPG  147 (204)
T ss_dssp             GGTTSCCCSEEEECSCC----CHH-HHHHHHHHSCTT
T ss_pred             hcccCCCCCEEEECCcc----cHH-HHHHHHHhcCCC
Confidence            32233579999998755    566 999999999996

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.61  E-value=1.2e-15  Score=115.94  Aligned_cols=102  Identities=9%  Similarity=0.021  Sum_probs=80.2

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhc--cCCCCceeeEecCCCCCCCCCCCcceEE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEFLPLKESSLDLAI  166 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~~~~~d~~~l~~~~~~fDlVi  166 (191)
                      ..++.+|||+|||+|.++..+++.+|..+|+|+|+|+.|++.+.+.....  .....++.++++|++.+++++++ |.|+
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~  103 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH  103 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence            44677999999999999999999877799999999999998643332210  12334799999999999987766 7776


Q ss_pred             eCC---cc--cCcCChHHHHHHHHhccCCC
Q 029554          167 SCL---GL--HWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~---~l--~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ...   .+  ||++|+..+++++.++||||
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  133 (218)
T 3mq2_A          104 VLMPWGSLLRGVLGSSPEMLRGMAAVCRPG  133 (218)
T ss_dssp             EESCCHHHHHHHHTSSSHHHHHHHHTEEEE
T ss_pred             EEccchhhhhhhhccHHHHHHHHHHHcCCC
Confidence            433   23  37788899999999999986

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.61  E-value=3.1e-15  Score=115.95  Aligned_cols=96  Identities=20%  Similarity=0.291  Sum_probs=80.0

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..+++.+  .+|+++|+|+.|++.++++...   ...++.++++|+..++++ ++||+|++..
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~---~~~~v~~~~~d~~~~~~~-~~fD~v~~~~  113 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKE---RNLKIEFLQGDVLEIAFK-NEFDAVTMFF  113 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCCCEEEESCGGGCCCC-SCEEEEEECS
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHh---cCCceEEEECChhhcccC-CCccEEEEcC
Confidence            456799999999999999999876  7999999999999999988754   233688999998888765 6899999875


Q ss_pred             c-ccCc--CChHHHHHHHHhccCCC
Q 029554          170 G-LHWT--NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~-l~~~--~d~~~~l~~i~r~Lkpg  191 (191)
                      + ++|.  ++...++.++.++|+||
T Consensus       114 ~~~~~~~~~~~~~~l~~~~~~L~pg  138 (252)
T 1wzn_A          114 STIMYFDEEDLRKLFSKVAEALKPG  138 (252)
T ss_dssp             SGGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             CchhcCCHHHHHHHHHHHHHHcCCC
Confidence            4 4444  35678999999999986

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.61  E-value=1.3e-15  Score=116.66  Aligned_cols=87  Identities=15%  Similarity=0.151  Sum_probs=76.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC-CCCCCC-CCCcceEEe
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFLPLK-ESSLDLAIS  167 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~-~~l~~~-~~~fDlVis  167 (191)
                      .++.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.++++..       ++.++++|+ +.+|++ +++||+|++
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~d~~~~~~~~~~~~fD~v~~  117 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQA--ARWAAYDFSPELLKLARANAP-------HADVYEWNGKGELPAGLGAPFGLIVS  117 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHCT-------TSEEEECCSCSSCCTTCCCCEEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhCC-------CceEEEcchhhccCCcCCCCEEEEEe
Confidence            467899999999999999999886  799999999999999987732       488999998 678887 889999999


Q ss_pred             CCcccCcCChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +      .++..++.++.++||||
T Consensus       118 ~------~~~~~~l~~~~~~Lkpg  135 (226)
T 3m33_A          118 R------RGPTSVILRLPELAAPD  135 (226)
T ss_dssp             E------SCCSGGGGGHHHHEEEE
T ss_pred             C------CCHHHHHHHHHHHcCCC
Confidence            8      47788899999999986

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.60  E-value=6.2e-15  Score=119.83  Aligned_cols=99  Identities=17%  Similarity=0.123  Sum_probs=83.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..+++.+ ..+|+++|+|+ |++.++++... .+...++.++.+|++.+++++++||+|+++.
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~  139 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIRL-NKLEDTITLIKGKIEEVHLPVEKVDVIISEW  139 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHHH-TTCTTTEEEEESCTTTSCCSCSCEEEEEECC
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHHH-cCCCCcEEEEEeeHHHhcCCCCcEEEEEEcC
Confidence            467799999999999999998874 46999999996 99999888764 1223579999999999888888999999987


Q ss_pred             ---cccCcCChHHHHHHHHhccCCC
Q 029554          170 ---GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ---~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                         .+.+..++..++.++.++||||
T Consensus       140 ~~~~l~~~~~~~~~l~~~~~~Lkpg  164 (340)
T 2fyt_A          140 MGYFLLFESMLDSVLYAKNKYLAKG  164 (340)
T ss_dssp             CBTTBTTTCHHHHHHHHHHHHEEEE
T ss_pred             chhhccCHHHHHHHHHHHHhhcCCC
Confidence               5666777889999999999986

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.60  E-value=4.9e-15  Score=113.10  Aligned_cols=136  Identities=13%  Similarity=-0.010  Sum_probs=93.7

Q ss_pred             CHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHH
Q 029554           52 DRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKL  130 (191)
Q Consensus        52 d~~~~~~~~~~~a~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~  130 (191)
                      |...+...+++.+..+..........+. ++..+.. ..++.+|||+|||+|..+..++... +..+|+++|+|+.+++.
T Consensus        21 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~   98 (221)
T 3u81_A           21 DPQSVLEAIDTYCTQKEWAMNVGDAKGQ-IMDAVIR-EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAI   98 (221)
T ss_dssp             CHHHHHHHHHHHHHHHTCGGGCCHHHHH-HHHHHHH-HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHH
T ss_pred             CHHHHHHHHHHHhhhcCcCcccCHHHHH-HHHHHHH-hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHH
Confidence            4444445555555444433233333333 3333332 3366799999999999999998864 35899999999999999


Q ss_pred             HHHhhhhccCCCCceeeEecCCCC-CCC-C----CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          131 CKDAQQDAHNDNIETCFVVGDEEF-LPL-K----ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       131 a~~~~~~~~~~~~~~~~~~~d~~~-l~~-~----~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++++... ....++.++++|... ++. .    .++||+|++....++..+....+..+ ++||||
T Consensus        99 a~~~~~~~-~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~Lkpg  163 (221)
T 3u81_A           99 TQQMLNFA-GLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKG  163 (221)
T ss_dssp             HHHHHHHH-TCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTT
T ss_pred             HHHHHHHc-CCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCC
Confidence            99987641 223468999999643 332 1    26899999998888776666777777 999997

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.60  E-value=1.2e-15  Score=118.87  Aligned_cols=101  Identities=14%  Similarity=0.014  Sum_probs=80.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCC---------------------------C
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND---------------------------N  142 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~---------------------------~  142 (191)
                      .++.+|||+|||+|.++..++..+. .+|+++|+|+.|++.++++.......                           .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            3456899999999999998888763 59999999999999998876431000                           0


Q ss_pred             Cce-eeEecCCCCCC-CCC---CCcceEEeCCccc----CcCChHHHHHHHHhccCCC
Q 029554          143 IET-CFVVGDEEFLP-LKE---SSLDLAISCLGLH----WTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       143 ~~~-~~~~~d~~~l~-~~~---~~fDlVis~~~l~----~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .++ .+.++|+...+ +++   ++||+|+++.+++    ++.++..++.++.++||||
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg  191 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPG  191 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCC
Confidence            126 88889987653 355   7899999999999    6667889999999999986

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.59  E-value=3.5e-15  Score=115.32  Aligned_cols=95  Identities=9%  Similarity=-0.001  Sum_probs=79.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC---CCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK---ESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~---~~~fDlVis  167 (191)
                      ++.+|||+|||+|..+..++...+..+|+++|+|+.|++.++++....  ...++.++++|++.++++   +++||+|++
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~  147 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL--QLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH--TCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--CCCCEEEEeccHHHhcccccccCCccEEEE
Confidence            567999999999999999986556689999999999999999887652  233589999998776643   578999999


Q ss_pred             CCcccCcCChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ..    +.++..++.++.++|+||
T Consensus       148 ~~----~~~~~~~l~~~~~~Lkpg  167 (240)
T 1xdz_A          148 RA----VARLSVLSELCLPLVKKN  167 (240)
T ss_dssp             EC----CSCHHHHHHHHGGGEEEE
T ss_pred             ec----cCCHHHHHHHHHHhcCCC
Confidence            76    467899999999999986

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.59  E-value=1.3e-14  Score=118.73  Aligned_cols=99  Identities=10%  Similarity=-0.005  Sum_probs=84.2

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC--CCCCCCcceEEe
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL--PLKESSLDLAIS  167 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l--~~~~~~fDlVis  167 (191)
                      ....+|||||||+|.++..+++.+|..+++++|+ +.+++.++++.... ....++.++.+|+...  |++ ++||+|++
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~  254 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGL-SGSERIHGHGANLLDRDVPFP-TGFDAVWM  254 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTC-TTGGGEEEEECCCCSSSCCCC-CCCSEEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhc-CcccceEEEEccccccCCCCC-CCcCEEEE
Confidence            3567999999999999999999888889999999 99999999887541 1235799999998765  555 78999999


Q ss_pred             CCcccCcCCh--HHHHHHHHhccCCC
Q 029554          168 CLGLHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      ..++|+++|.  ..+++++.++||||
T Consensus       255 ~~vlh~~~~~~~~~~l~~~~~~L~pg  280 (363)
T 3dp7_A          255 SQFLDCFSEEEVISILTRVAQSIGKD  280 (363)
T ss_dssp             ESCSTTSCHHHHHHHHHHHHHHCCTT
T ss_pred             echhhhCCHHHHHHHHHHHHHhcCCC
Confidence            9999998765  47899999999997

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.59  E-value=8.1e-15  Score=120.82  Aligned_cols=96  Identities=13%  Similarity=0.115  Sum_probs=83.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ++.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.++++...   ....+.++++|+...+.++++||+|+++..
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g--~~V~gvDis~~al~~A~~n~~~---~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp  307 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMG--AEVVGVEDDLASVLSLQKGLEA---NALKAQALHSDVDEALTEEARFDIIVTNPP  307 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTT--CEEEEEESBHHHHHHHHHHHHH---TTCCCEEEECSTTTTSCTTCCEEEEEECCC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHH---cCCCeEEEEcchhhccccCCCeEEEEECCc
Confidence            56799999999999999999886  7999999999999999998865   223488999998887766789999999999


Q ss_pred             ccC-----cCChHHHHHHHHhccCCC
Q 029554          171 LHW-----TNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~-----~~d~~~~l~~i~r~Lkpg  191 (191)
                      +|+     ..+...++.++.++||||
T Consensus       308 ~~~~~~~~~~~~~~~l~~~~~~LkpG  333 (381)
T 3dmg_A          308 FHVGGAVILDVAQAFVNVAAARLRPG  333 (381)
T ss_dssp             CCTTCSSCCHHHHHHHHHHHHHEEEE
T ss_pred             hhhcccccHHHHHHHHHHHHHhcCcC
Confidence            998     456678999999999986

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.59  E-value=1.1e-14  Score=118.68  Aligned_cols=99  Identities=17%  Similarity=0.172  Sum_probs=83.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+| .|++.|+++... .+...++.++.+|++.+++++++||+|+++.
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g-~~~v~gvD~s-~~l~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~  141 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECS-SISDYAVKIVKA-NKLDHVVTIIKGKVEEVELPVEKVDIIISEW  141 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTT-CSEEEEEECS-THHHHHHHHHHH-TTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred             CCCCEEEEEeccchHHHHHHHHCC-CCEEEEECcH-HHHHHHHHHHHH-cCCCCcEEEEECcHHHccCCCCceEEEEEcc
Confidence            367899999999999999998874 4699999999 599999988765 1223458999999999988889999999976


Q ss_pred             c---ccCcCChHHHHHHHHhccCCC
Q 029554          170 G---LHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~---l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .   +++..++..++.++.++||||
T Consensus       142 ~~~~l~~~~~~~~~l~~~~r~Lkpg  166 (349)
T 3q7e_A          142 MGYCLFYESMLNTVLHARDKWLAPD  166 (349)
T ss_dssp             CBBTBTBTCCHHHHHHHHHHHEEEE
T ss_pred             ccccccCchhHHHHHHHHHHhCCCC
Confidence            5   445578999999999999986

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.59  E-value=3.4e-15  Score=113.55  Aligned_cols=95  Identities=12%  Similarity=0.048  Sum_probs=72.2

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC----CCCCCCCcceE
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPLKESSLDLA  165 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~----l~~~~~~fDlV  165 (191)
                      .++.+|||+|||+|..+..+++..+..+|+|+|+|+.|++.+.+....    ..++.++++|...    .++. ++||+|
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~----~~~v~~~~~d~~~~~~~~~~~-~~fD~V  130 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE----RNNIIPLLFDASKPWKYSGIV-EKVDLI  130 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH----CSSEEEECSCTTCGGGTTTTC-CCEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc----CCCeEEEEcCCCCchhhcccc-cceeEE
Confidence            467799999999999999998875556899999999988766655433    1347778888765    3444 789999


Q ss_pred             EeCCcccCcCChHHHHHHHHhccCCC
Q 029554          166 ISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       166 is~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++.. + ..+...++.++.++||||
T Consensus       131 ~~~~~-~-~~~~~~~l~~~~r~Lkpg  154 (210)
T 1nt2_A          131 YQDIA-Q-KNQIEILKANAEFFLKEK  154 (210)
T ss_dssp             EECCC-S-TTHHHHHHHHHHHHEEEE
T ss_pred             EEecc-C-hhHHHHHHHHHHHHhCCC
Confidence            99842 2 223445689999999996

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.58  E-value=4.8e-15  Score=122.22  Aligned_cols=113  Identities=8%  Similarity=-0.017  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhh-------hccCCCCceeeE
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ-------DAHNDNIETCFV  148 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~-------~~~~~~~~~~~~  148 (191)
                      .....+++.+.  ..++.+|||||||+|.++..++...+..+++|+|+|+.+++.|++...       ..+....++.++
T Consensus       160 ~~i~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi  237 (438)
T 3uwp_A          160 DLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE  237 (438)
T ss_dssp             HHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEE
T ss_pred             HHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEE
Confidence            34455665554  457889999999999999998876555679999999999999986432       111113579999


Q ss_pred             ecCCCCCCCCC--CCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          149 VGDEEFLPLKE--SSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       149 ~~d~~~l~~~~--~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++|+..+++.+  ..||+|++|..++ .+++...|.++.++||||
T Consensus       238 ~GD~~~lp~~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPG  281 (438)
T 3uwp_A          238 RGDFLSEEWRERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEG  281 (438)
T ss_dssp             ECCTTSHHHHHHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTT
T ss_pred             ECcccCCccccccCCccEEEEccccc-CchHHHHHHHHHHcCCCC
Confidence            99999887643  4799999987764 568889999999999997

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.58  E-value=2.3e-14  Score=117.58  Aligned_cols=97  Identities=12%  Similarity=0.047  Sum_probs=83.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ...+|||+|||+|..+..+++.+|..+++++|+ +.+++.++++... .....++.+..+|+. .+++. .||+|++..+
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~-~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~v  277 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTG-RGLADRCEILPGDFF-ETIPD-GADVYLIKHV  277 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH-TTCTTTEEEEECCTT-TCCCS-SCSEEEEESC
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhh-cCcCCceEEeccCCC-CCCCC-CceEEEhhhh
Confidence            467999999999999999999888889999999 9999999988754 122457999999987 45554 7999999999


Q ss_pred             ccCcCChH--HHHHHHHhccCCC
Q 029554          171 LHWTNDLP--GAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~~--~~l~~i~r~Lkpg  191 (191)
                      +|+++|..  .+++++.++|+||
T Consensus       278 lh~~~d~~~~~~L~~~~~~L~pg  300 (369)
T 3gwz_A          278 LHDWDDDDVVRILRRIATAMKPD  300 (369)
T ss_dssp             GGGSCHHHHHHHHHHHHTTCCTT
T ss_pred             hccCCHHHHHHHHHHHHHHcCCC
Confidence            99998776  7999999999997

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.58  E-value=4.5e-15  Score=114.77  Aligned_cols=101  Identities=8%  Similarity=-0.027  Sum_probs=79.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhc----cCCCCceeeEecCCCC-CC--CCCCCcc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA----HNDNIETCFVVGDEEF-LP--LKESSLD  163 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~----~~~~~~~~~~~~d~~~-l~--~~~~~fD  163 (191)
                      ...+|||||||+|.++..++..+|...|+|+|+|+.|++.|++++...    .....++.++++|+.. ++  +++++||
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D  125 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT  125 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence            556899999999999999999888889999999999999998765421    0234579999999876 66  7789999


Q ss_pred             eEEeCCcccCcCC--------hHHHHHHHHhccCCC
Q 029554          164 LAISCLGLHWTND--------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       164 lVis~~~l~~~~d--------~~~~l~~i~r~Lkpg  191 (191)
                      .|++++...|...        ...++.++.++||||
T Consensus       126 ~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpG  161 (235)
T 3ckk_A          126 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVG  161 (235)
T ss_dssp             EEEEESCC-----------CCCHHHHHHHHHHEEEE
T ss_pred             EEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCC
Confidence            9998776555421        147999999999986

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.58  E-value=3e-15  Score=123.23  Aligned_cols=98  Identities=15%  Similarity=0.108  Sum_probs=81.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||||||+|.++..+++.+ ..+|+++|+| .|++.++++... .+...++.++.+|++.++++ ++||+|+++.
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~  137 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMADHARALVKA-NNLDHIVEVIEGSVEDISLP-EKVDVIISEW  137 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESS-TTHHHHHHHHHH-TTCTTTEEEEESCGGGCCCS-SCEEEEEECC
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccH-HHHHHHHHHHHH-cCCCCeEEEEECchhhcCcC-CcceEEEEcC
Confidence            467799999999999999999875 3599999999 999999988765 12234589999999988876 8899999977


Q ss_pred             cccCc---CChHHHHHHHHhccCCC
Q 029554          170 GLHWT---NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~---~d~~~~l~~i~r~Lkpg  191 (191)
                      ..+++   .++..++.++.++||||
T Consensus       138 ~~~~l~~e~~~~~~l~~~~~~Lkpg  162 (376)
T 3r0q_C          138 MGYFLLRESMFDSVISARDRWLKPT  162 (376)
T ss_dssp             CBTTBTTTCTHHHHHHHHHHHEEEE
T ss_pred             hhhcccchHHHHHHHHHHHhhCCCC
Confidence            55554   56888999999999986

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.58  E-value=2.3e-14  Score=117.04  Aligned_cols=106  Identities=10%  Similarity=0.013  Sum_probs=87.4

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE  159 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~  159 (191)
                      .+++.+.  ..+..+|||||||+|.++..+.+.+|..+++++|+ +.+++.++++.... ....++.++.+|+...++++
T Consensus       181 ~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~  256 (359)
T 1x19_A          181 LLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK-GVADRMRGIAVDIYKESYPE  256 (359)
T ss_dssp             HHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT-TCTTTEEEEECCTTTSCCCC
T ss_pred             HHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhc-CCCCCEEEEeCccccCCCCC
Confidence            4444443  24567999999999999999999887789999999 99999999887641 12335999999988777654


Q ss_pred             CCcceEEeCCcccCcCC--hHHHHHHHHhccCCC
Q 029554          160 SSLDLAISCLGLHWTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       160 ~~fDlVis~~~l~~~~d--~~~~l~~i~r~Lkpg  191 (191)
                      .  |+|++..++|+++|  ...+++++.++|+||
T Consensus       257 ~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pg  288 (359)
T 1x19_A          257 A--DAVLFCRILYSANEQLSTIMCKKAFDAMRSG  288 (359)
T ss_dssp             C--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTT
T ss_pred             C--CEEEEechhccCCHHHHHHHHHHHHHhcCCC
Confidence            3  99999999999987  788999999999997

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.57  E-value=2.3e-14  Score=107.80  Aligned_cols=107  Identities=13%  Similarity=0.018  Sum_probs=84.1

Q ss_pred             HHHHHHHHHhcc-cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554           78 AENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (191)
Q Consensus        78 ~~~l~~~l~~~~-~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~  156 (191)
                      ...+++.+.... .++.+|||+|||+|..+..++...+..+++++|+|+.+++.++++...  ....++.+..+|+...+
T Consensus        51 ~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~v~~~~~d~~~~~  128 (207)
T 1jsx_A           51 VRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHE--LKLENIEPVQSRVEEFP  128 (207)
T ss_dssp             HHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--TTCSSEEEEECCTTTSC
T ss_pred             HHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--cCCCCeEEEecchhhCC
Confidence            444555444211 146799999999999999998876678999999999999999988765  23334899999988766


Q ss_pred             CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          157 LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                       ++++||+|+++.    +.++..++.++.++|+||
T Consensus       129 -~~~~~D~i~~~~----~~~~~~~l~~~~~~L~~g  158 (207)
T 1jsx_A          129 -SEPPFDGVISRA----FASLNDMVSWCHHLPGEQ  158 (207)
T ss_dssp             -CCSCEEEEECSC----SSSHHHHHHHHTTSEEEE
T ss_pred             -ccCCcCEEEEec----cCCHHHHHHHHHHhcCCC
Confidence             457899999864    356789999999999986

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.57  E-value=1.1e-14  Score=117.54  Aligned_cols=110  Identities=10%  Similarity=0.035  Sum_probs=87.5

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK  158 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~  158 (191)
                      ..+++.+.....+..+|||+|||+|..+..+.+..|..+++++|+| .+++.++++.... ....++.+..+|+...+++
T Consensus       153 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~  230 (335)
T 2r3s_A          153 QLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQ-GVASRYHTIAGSAFEVDYG  230 (335)
T ss_dssp             HHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHH-TCGGGEEEEESCTTTSCCC
T ss_pred             HHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhc-CCCcceEEEecccccCCCC
Confidence            3455444310146679999999999999999988777899999999 9999999877541 1234599999998877766


Q ss_pred             CCCcceEEeCCcccCcCC--hHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~~d--~~~~l~~i~r~Lkpg  191 (191)
                      ++ ||+|+++.++||+++  ...+++++.++|+||
T Consensus       231 ~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg  264 (335)
T 2r3s_A          231 ND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVE  264 (335)
T ss_dssp             SC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             CC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCC
Confidence            44 999999999999954  468999999999986

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.57  E-value=1.6e-14  Score=116.64  Aligned_cols=97  Identities=14%  Similarity=-0.012  Sum_probs=83.0

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ...+|||+|||+|..+..+.+.+|..+++++|+ +.+++.++++... .....++.+..+|+. .+++. +||+|++..+
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~-~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v  244 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLD-TGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV  244 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH-TTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhh-cCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence            356999999999999999999888889999999 9999999988754 122356999999986 44444 7999999999


Q ss_pred             ccCcCCh--HHHHHHHHhccCCC
Q 029554          171 LHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      +||++|.  ..+++++.++|+||
T Consensus       245 lh~~~~~~~~~~l~~~~~~L~pg  267 (332)
T 3i53_A          245 LHDWDDLSAVAILRRCAEAAGSG  267 (332)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTT
T ss_pred             hccCCHHHHHHHHHHHHHhcCCC
Confidence            9999875  78999999999997

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.56  E-value=7.4e-15  Score=111.28  Aligned_cols=88  Identities=19%  Similarity=0.255  Sum_probs=73.8

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE  159 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~  159 (191)
                      .+++.+.. ..++.+|||+|||+|.++..+.     .+++++|+|+.                 ++.+.++|+..+++++
T Consensus        57 ~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~-----------------~~~~~~~d~~~~~~~~  113 (215)
T 2zfu_A           57 RIARDLRQ-RPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL-----------------DPRVTVCDMAQVPLED  113 (215)
T ss_dssp             HHHHHHHT-SCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS-----------------STTEEESCTTSCSCCT
T ss_pred             HHHHHHhc-cCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC-----------------CceEEEeccccCCCCC
Confidence            35555543 2456799999999999998773     68999999987                 2677889998888888


Q ss_pred             CCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          160 SSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       160 ~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++||+|+++.++|| .++..++.++.++|+||
T Consensus       114 ~~fD~v~~~~~l~~-~~~~~~l~~~~~~L~~g  144 (215)
T 2zfu_A          114 ESVDVAVFCLSLMG-TNIRDFLEEANRVLKPG  144 (215)
T ss_dssp             TCEEEEEEESCCCS-SCHHHHHHHHHHHEEEE
T ss_pred             CCEeEEEEehhccc-cCHHHHHHHHHHhCCCC
Confidence            99999999999986 89999999999999986

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.56  E-value=8.3e-15  Score=112.88  Aligned_cols=120  Identities=13%  Similarity=0.076  Sum_probs=93.5

Q ss_pred             hcCCCchHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCC
Q 029554           66 LTRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI  143 (191)
Q Consensus        66 ~y~~~~~~~~~~~~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~  143 (191)
                      .|+.++..+..++..++.-+..+ .+|+.+|||+|||+|..+..+++. +|..+|+++|+|+.|++.++++...    ..
T Consensus        51 e~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~----~~  126 (233)
T 4df3_A           51 EYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD----RR  126 (233)
T ss_dssp             EEEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT----CT
T ss_pred             eeeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh----hc
Confidence            56667777766766666554433 468899999999999999999876 6778999999999999999887643    34


Q ss_pred             ceeeEecCCC---CCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          144 ETCFVVGDEE---FLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       144 ~~~~~~~d~~---~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++..+.+|..   ..++..+++|+|++.  +.|..+...++.++.++||||
T Consensus       127 ni~~V~~d~~~p~~~~~~~~~vDvVf~d--~~~~~~~~~~l~~~~r~LKpG  175 (233)
T 4df3_A          127 NIFPILGDARFPEKYRHLVEGVDGLYAD--VAQPEQAAIVVRNARFFLRDG  175 (233)
T ss_dssp             TEEEEESCTTCGGGGTTTCCCEEEEEEC--CCCTTHHHHHHHHHHHHEEEE
T ss_pred             CeeEEEEeccCccccccccceEEEEEEe--ccCChhHHHHHHHHHHhccCC
Confidence            6777777754   345667889999975  445567788999999999986

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.56  E-value=4.8e-14  Score=113.99  Aligned_cols=99  Identities=15%  Similarity=0.151  Sum_probs=81.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..+++.+ ..+|+++|+| .|++.++++... .+...++.++.+|++.+++++++||+|+++.
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g-~~~v~~vD~s-~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~  113 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMS-SIIEMAKELVEL-NGFSDKITLLRGKLEDVHLPFPKVDIIISEW  113 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESS-THHHHHHHHHHH-TTCTTTEEEEESCTTTSCCSSSCEEEEEECC
T ss_pred             cCCCEEEEecCccHHHHHHHHHCC-CCEEEEEChH-HHHHHHHHHHHH-cCCCCCEEEEECchhhccCCCCcccEEEEeC
Confidence            367799999999999999998864 4689999999 699999888764 1223468999999998888778999999985


Q ss_pred             ---cccCcCChHHHHHHHHhccCCC
Q 029554          170 ---GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ---~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                         .+.+..++..++.++.++||||
T Consensus       114 ~~~~l~~~~~~~~~l~~~~~~Lkpg  138 (328)
T 1g6q_1          114 MGYFLLYESMMDTVLYARDHYLVEG  138 (328)
T ss_dssp             CBTTBSTTCCHHHHHHHHHHHEEEE
T ss_pred             chhhcccHHHHHHHHHHHHhhcCCC
Confidence               4455667889999999999986

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.56  E-value=5.6e-15  Score=113.48  Aligned_cols=92  Identities=13%  Similarity=0.087  Sum_probs=77.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC----CCCCCCCcceE
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPLKESSLDLA  165 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~----l~~~~~~fDlV  165 (191)
                      .++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.++++...    ..++.++.+|+..    +++. ++||+|
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~v~~~~~d~~~~~~~~~~~-~~~D~v  147 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE----RENIIPILGDANKPQEYANIV-EKVDVI  147 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT----CTTEEEEECCTTCGGGGTTTS-CCEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc----CCCeEEEECCCCCcccccccC-ccEEEE
Confidence            366799999999999999998875567999999999999999888753    2578999999887    7766 789999


Q ss_pred             EeCCcccCcCCh---HHHHHHHHhccCCC
Q 029554          166 ISCLGLHWTNDL---PGAMIQVSIFLLPD  191 (191)
Q Consensus       166 is~~~l~~~~d~---~~~l~~i~r~Lkpg  191 (191)
                      +     |++.++   ..++.++.++||||
T Consensus       148 ~-----~~~~~~~~~~~~l~~~~~~Lkpg  171 (230)
T 1fbn_A          148 Y-----EDVAQPNQAEILIKNAKWFLKKG  171 (230)
T ss_dssp             E-----ECCCSTTHHHHHHHHHHHHEEEE
T ss_pred             E-----EecCChhHHHHHHHHHHHhCCCC
Confidence            8     455566   77899999999986

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.56  E-value=2.2e-15  Score=130.11  Aligned_cols=84  Identities=24%  Similarity=0.331  Sum_probs=73.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC--CCCCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL--PLKESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l--~~~~~~fDlVis~  168 (191)
                      .+.+|||||||+|.++..|++.|  .+|+|+|+|+.+++.|+..+.+  ....++.+.+++++.+  ++++++||+|+|.
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~g--a~V~giD~~~~~i~~a~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~  141 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKG--ATIVGIDFQQENINVCRALAEE--NPDFAAEFRVGRIEEVIAALEEGEFDLAIGL  141 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHT--STTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred             CCCeEEEECCCCcHHHHHHHhCC--CEEEEECCCHHHHHHHHHHHHh--cCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence            45799999999999999999988  8999999999999999988764  3345799999998876  4567899999999


Q ss_pred             CcccCcCChH
Q 029554          169 LGLHWTNDLP  178 (191)
Q Consensus       169 ~~l~~~~d~~  178 (191)
                      .+++|+.|+.
T Consensus       142 e~~ehv~~~~  151 (569)
T 4azs_A          142 SVFHHIVHLH  151 (569)
T ss_dssp             SCHHHHHHHH
T ss_pred             cchhcCCCHH
Confidence            9999998775

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.55  E-value=4.3e-15  Score=114.13  Aligned_cols=101  Identities=12%  Similarity=0.030  Sum_probs=75.4

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECC-hhHHHHH---HHhhhhccCCCCceeeEecCCCCCCCC-CCCcc
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTS-YDMLKLC---KDAQQDAHNDNIETCFVVGDEEFLPLK-ESSLD  163 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s-~~~l~~a---~~~~~~~~~~~~~~~~~~~d~~~l~~~-~~~fD  163 (191)
                      ..++.+|||||||+|.++..++...+..+|+|+|+| +.|++.|   +++...  ....++.+.++|.+.+|.. .+.+|
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~--~~~~~v~~~~~d~~~l~~~~~d~v~   99 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK--GGLSNVVFVIAAAESLPFELKNIAD   99 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGG--TCCSSEEEECCBTTBCCGGGTTCEE
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHH--cCCCCeEEEEcCHHHhhhhccCeEE
Confidence            346779999999999999999876667899999999 7787776   555543  2345689999999888632 14566


Q ss_pred             eEEeCCccc-----CcCChHHHHHHHHhccCCC
Q 029554          164 LAISCLGLH-----WTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       164 lVis~~~l~-----~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .|++++.+.     +..+...++.++.++||||
T Consensus       100 ~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpG  132 (225)
T 3p2e_A          100 SISILFPWGTLLEYVIKPNRDILSNVADLAKKE  132 (225)
T ss_dssp             EEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEE
T ss_pred             EEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCC
Confidence            666655432     2235567899999999996

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.55  E-value=9.2e-16  Score=115.62  Aligned_cols=111  Identities=12%  Similarity=0.007  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l  155 (191)
                      .+...+++.+.. ..++.+|||+|||+|.++..+++.++..+++++|+|+.+++.++++...  ... ++.++++|+.. 
T Consensus        16 ~~~~~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~-~~~~~~~d~~~-   90 (215)
T 4dzr_A           16 VLVEEAIRFLKR-MPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAER--FGA-VVDWAAADGIE-   90 (215)
T ss_dssp             HHHHHHHHHHTT-CCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------------CCHHHHHH-
T ss_pred             HHHHHHHHHhhh-cCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH--hCC-ceEEEEcchHh-
Confidence            344555555542 2467799999999999999999987778999999999999999887754  111 67888888665 


Q ss_pred             CCCC-----CCcceEEeCCcccCcCCh--------------------------HHHHHHHHhccCCC
Q 029554          156 PLKE-----SSLDLAISCLGLHWTNDL--------------------------PGAMIQVSIFLLPD  191 (191)
Q Consensus       156 ~~~~-----~~fDlVis~~~l~~~~d~--------------------------~~~l~~i~r~Lkpg  191 (191)
                      ++++     ++||+|+++..+++..+.                          ..++.++.++||||
T Consensus        91 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  157 (215)
T 4dzr_A           91 WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARG  157 (215)
T ss_dssp             HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSS
T ss_pred             hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCC
Confidence            4444     889999998665543322                          67788899999986

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.55  E-value=1.2e-14  Score=109.67  Aligned_cols=97  Identities=11%  Similarity=0.013  Sum_probs=77.5

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC--CceeeEecCCCCC-C-CCCCC-cceE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFL-P-LKESS-LDLA  165 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~--~~~~~~~~d~~~l-~-~~~~~-fDlV  165 (191)
                      ++.+|||+|||+|.++..+...+ ..+|+++|+|+.|++.++++...  ...  .++.++++|+..+ + +++++ ||+|
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  129 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQT--LKCSSEQAEVINQSSLDFLKQPQNQPHFDVV  129 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHH--TTCCTTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHH--hCCCccceEEEECCHHHHHHhhccCCCCCEE
Confidence            56789999999999999866654 36899999999999999998865  222  4789999997653 2 23578 9999


Q ss_pred             EeCCcccCcCChHHHHHHH--HhccCCC
Q 029554          166 ISCLGLHWTNDLPGAMIQV--SIFLLPD  191 (191)
Q Consensus       166 is~~~l~~~~d~~~~l~~i--~r~Lkpg  191 (191)
                      +++..++ ..+...++..+  .++|+||
T Consensus       130 ~~~~~~~-~~~~~~~l~~~~~~~~Lkpg  156 (201)
T 2ift_A          130 FLDPPFH-FNLAEQAISLLCENNWLKPN  156 (201)
T ss_dssp             EECCCSS-SCHHHHHHHHHHHTTCEEEE
T ss_pred             EECCCCC-CccHHHHHHHHHhcCccCCC
Confidence            9998855 56778889998  6689885

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.55  E-value=2.5e-14  Score=109.50  Aligned_cols=103  Identities=14%  Similarity=0.070  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      ..+...+++.+.  ..++.+|||+|||+|.++..++..+  .+|+++|+|+.+++.++++...   .. ++.+..+|...
T Consensus        56 ~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~---~~-~v~~~~~d~~~  127 (231)
T 1vbf_A           56 LNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSY---YN-NIKLILGDGTL  127 (231)
T ss_dssp             HHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTT---CS-SEEEEESCGGG
T ss_pred             HHHHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhh---cC-CeEEEECCccc
Confidence            344555665554  4567899999999999999999887  8999999999999999988754   12 68899999776


Q ss_pred             CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          155 LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ....+++||+|+++.+++|+.      .++.++|+||
T Consensus       128 ~~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pg  158 (231)
T 1vbf_A          128 GYEEEKPYDRVVVWATAPTLL------CKPYEQLKEG  158 (231)
T ss_dssp             CCGGGCCEEEEEESSBBSSCC------HHHHHTEEEE
T ss_pred             ccccCCCccEEEECCcHHHHH------HHHHHHcCCC
Confidence            332457899999999999985      3688888885

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.55  E-value=2e-14  Score=108.21  Aligned_cols=103  Identities=12%  Similarity=0.031  Sum_probs=81.4

Q ss_pred             HHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCC
Q 029554           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKES  160 (191)
Q Consensus        81 l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~  160 (191)
                      ++..+.....++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++...  ....++.+..+|+...  .++
T Consensus        50 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~v~~~~~d~~~~--~~~  124 (205)
T 3grz_A           50 AMLGIERAMVKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAAL--NGIYDIALQKTSLLAD--VDG  124 (205)
T ss_dssp             HHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHH--TTCCCCEEEESSTTTT--CCS
T ss_pred             HHHHHHHhccCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH--cCCCceEEEecccccc--CCC
Confidence            33344333346789999999999999998875 346999999999999999998765  2333388999998664  357


Q ss_pred             CcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          161 SLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       161 ~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +||+|+++..++++   ..++.++.++|+||
T Consensus       125 ~fD~i~~~~~~~~~---~~~l~~~~~~L~~g  152 (205)
T 3grz_A          125 KFDLIVANILAEIL---LDLIPQLDSHLNED  152 (205)
T ss_dssp             CEEEEEEESCHHHH---HHHGGGSGGGEEEE
T ss_pred             CceEEEECCcHHHH---HHHHHHHHHhcCCC
Confidence            89999999888764   78899999999885

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.54  E-value=2.1e-14  Score=118.14  Aligned_cols=108  Identities=9%  Similarity=0.027  Sum_probs=82.1

Q ss_pred             HHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC-CCCceeeEecCCCCCCCCC
Q 029554           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN-DNIETCFVVGDEEFLPLKE  159 (191)
Q Consensus        81 l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~~~~d~~~l~~~~  159 (191)
                      +++.+.  ..++.+|||+|||+|.++..++..+|..+|+++|+|+.+++.++++....+- ...++.+..+|+.. ++++
T Consensus       214 ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~  290 (375)
T 4dcm_A          214 FMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEP  290 (375)
T ss_dssp             HHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCT
T ss_pred             HHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCC
Confidence            444443  3355799999999999999999988789999999999999999998765211 11257889999776 4567


Q ss_pred             CCcceEEeCCcccCcCC-----hHHHHHHHHhccCCC
Q 029554          160 SSLDLAISCLGLHWTND-----LPGAMIQVSIFLLPD  191 (191)
Q Consensus       160 ~~fDlVis~~~l~~~~d-----~~~~l~~i~r~Lkpg  191 (191)
                      ++||+|+++..+|+...     ...++.++.++||||
T Consensus       291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkpg  327 (375)
T 4dcm_A          291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKIN  327 (375)
T ss_dssp             TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEE
T ss_pred             CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCC
Confidence            89999999999886422     236899999999986

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.54  E-value=3.7e-14  Score=104.16  Aligned_cols=96  Identities=19%  Similarity=0.140  Sum_probs=75.1

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE  159 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~  159 (191)
                      .+++.+.....++.+|||+|||+|.++..+++.+   +|+++|+|+.|++.           ..++.+.++|+.. ++++
T Consensus        12 ~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~-----------~~~~~~~~~d~~~-~~~~   76 (170)
T 3q87_B           12 TLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES-----------HRGGNLVRADLLC-SINQ   76 (170)
T ss_dssp             HHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT-----------CSSSCEEECSTTT-TBCG
T ss_pred             HHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc-----------ccCCeEEECChhh-hccc
Confidence            3444443212466799999999999999999876   99999999999977           1237889999876 5566


Q ss_pred             CCcceEEeCCcccCcCCh---------HHHHHHHHhccCCC
Q 029554          160 SSLDLAISCLGLHWTNDL---------PGAMIQVSIFLLPD  191 (191)
Q Consensus       160 ~~fDlVis~~~l~~~~d~---------~~~l~~i~r~Lkpg  191 (191)
                      ++||+|+++..+++..+.         ...+.++.+.| ||
T Consensus        77 ~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pg  116 (170)
T 3q87_B           77 ESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TV  116 (170)
T ss_dssp             GGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CS
T ss_pred             CCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CC
Confidence            899999999999987654         56788888777 64

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.54  E-value=2.4e-14  Score=111.53  Aligned_cols=95  Identities=15%  Similarity=0.002  Sum_probs=79.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC---CCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK---ESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~---~~~fDlVis  167 (191)
                      ++.+|||||||+|..+..++...|..+|+++|+|+.+++.++++...  ....++.++++|++.++..   .++||+|+|
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s  157 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEV--LGLKGARALWGRAEVLAREAGHREAYARAVA  157 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH--HTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--hCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence            56799999999999999998877778999999999999999998765  2334589999998876542   478999999


Q ss_pred             CCcccCcCChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ..    +.+...++..+.++||||
T Consensus       158 ~a----~~~~~~ll~~~~~~Lkpg  177 (249)
T 3g89_A          158 RA----VAPLCVLSELLLPFLEVG  177 (249)
T ss_dssp             ES----SCCHHHHHHHHGGGEEEE
T ss_pred             CC----cCCHHHHHHHHHHHcCCC
Confidence            64    357789999999999986

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.54  E-value=2.4e-14  Score=116.42  Aligned_cols=98  Identities=11%  Similarity=0.012  Sum_probs=83.2

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-CCCCCcceEEeCCc
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKESSLDLAISCLG  170 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-~~~~~fDlVis~~~  170 (191)
                      ..+|||||||+|.++..+.+.+|..+++++|+ +.+++.++++... .....++.+..+|+...+ +.++.||+|+++.+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v  257 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHA-HDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC  257 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHH-TTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHh-cCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence            67999999999999999999888899999999 8899999887754 122346999999987765 13356999999999


Q ss_pred             ccCcCCh--HHHHHHHHhccCCC
Q 029554          171 LHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      +||++|.  ..+++++.++|+||
T Consensus       258 lh~~~~~~~~~~l~~~~~~L~pg  280 (352)
T 3mcz_A          258 LHYFDAREAREVIGHAAGLVKPG  280 (352)
T ss_dssp             GGGSCHHHHHHHHHHHHHTEEEE
T ss_pred             cccCCHHHHHHHHHHHHHHcCCC
Confidence            9999865  78999999999986

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.54  E-value=3.6e-14  Score=111.04  Aligned_cols=88  Identities=15%  Similarity=0.130  Sum_probs=75.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.++++..       ++.+...|.+.+++++++||+|+++.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~d~~~~~~~~~~fD~v~~~~  156 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP-------QVTFCVASSHRLPFSDTSMDAIIRIY  156 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT-------TSEEEECCTTSCSBCTTCEEEEEEES
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC-------CcEEEEcchhhCCCCCCceeEEEEeC
Confidence            46779999999999999999887555799999999999999987652       37889999998988889999999977


Q ss_pred             cccCcCChHHHHHHHHhccCCC
Q 029554          170 GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +.+       .+.++.++||||
T Consensus       157 ~~~-------~l~~~~~~L~pg  171 (269)
T 1p91_A          157 APC-------KAEELARVVKPG  171 (269)
T ss_dssp             CCC-------CHHHHHHHEEEE
T ss_pred             Chh-------hHHHHHHhcCCC
Confidence            643       478999999985

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.54  E-value=2.7e-14  Score=116.97  Aligned_cols=98  Identities=15%  Similarity=0.050  Sum_probs=82.0

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .+..+|||||||+|.++..+.+.+|..+++++|+ +.+++.++++.... +...++.++.+|+.. +++. .||+|+++.
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~  256 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA-GLADRVTVAEGDFFK-PLPV-TADVVLLSF  256 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT-TCTTTEEEEECCTTS-CCSC-CEEEEEEES
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhc-CCCCceEEEeCCCCC-cCCC-CCCEEEEec
Confidence            3567999999999999999998887789999999 99999999887541 223469999999764 3343 499999999


Q ss_pred             cccCcCChH--HHHHHHHhccCCC
Q 029554          170 GLHWTNDLP--GAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~--~~l~~i~r~Lkpg  191 (191)
                      ++||+++..  .+++++.++|+||
T Consensus       257 vl~~~~~~~~~~~l~~~~~~L~pg  280 (374)
T 1qzz_A          257 VLLNWSDEDALTILRGCVRALEPG  280 (374)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             cccCCCHHHHHHHHHHHHHhcCCC
Confidence            999998765  8999999999986

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.54  E-value=4.7e-14  Score=107.88  Aligned_cols=99  Identities=11%  Similarity=0.032  Sum_probs=78.9

Q ss_pred             ccCCCeEEEEcCC-ccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCCCCCCcceEE
Q 029554           89 RKTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKESSLDLAI  166 (191)
Q Consensus        89 ~~~~~~VLDlGcG-~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~~~~~fDlVi  166 (191)
                      ..++.+|||+||| +|.++..++..+ ..+|+++|+|+.+++.++++...  ... ++.++++|... .++++++||+|+
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~--~~~-~v~~~~~d~~~~~~~~~~~fD~I~  128 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIER--NNS-NVRLVKSNGGIIKGVVEGTFDVIF  128 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHH--TTC-CCEEEECSSCSSTTTCCSCEEEEE
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHH--hCC-CcEEEeCCchhhhhcccCceeEEE
Confidence            4577899999999 999999998873 38999999999999999998865  222 78999999643 345568999999


Q ss_pred             eCCcccCcCC-------------------hHHHHHHHHhccCCC
Q 029554          167 SCLGLHWTND-------------------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~~~d-------------------~~~~l~~i~r~Lkpg  191 (191)
                      ++..+++..+                   ...++.++.++||||
T Consensus       129 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  172 (230)
T 3evz_A          129 SAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG  172 (230)
T ss_dssp             ECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE
T ss_pred             ECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC
Confidence            9977765543                   477899999999986

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.54  E-value=1.1e-14  Score=108.92  Aligned_cols=102  Identities=10%  Similarity=-0.020  Sum_probs=80.7

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-CCCCCcceEE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKESSLDLAI  166 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-~~~~~fDlVi  166 (191)
                      ..++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.++++.... ....++.++++|++.++ +.+++||+|+
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~fD~v~   98 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL-NLIDRVTLIKDGHQNMDKYIDCPVKAVM   98 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHT-TCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCCeEEEECCHHHHhhhccCCceEEE
Confidence            3467899999999999999998863 4569999999999999999987651 12357899999987664 5568999999


Q ss_pred             eCCcccC---------cCChHHHHHHHHhccCCC
Q 029554          167 SCLGLHW---------TNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~---------~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++..+..         ..+...++.++.++||||
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g  132 (197)
T 3eey_A           99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTG  132 (197)
T ss_dssp             EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE
T ss_pred             EcCCcccCcccccccCcccHHHHHHHHHHhCcCC
Confidence            9876511         123457999999999985

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.54  E-value=2.2e-14  Score=115.35  Aligned_cols=106  Identities=13%  Similarity=0.090  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      .+...+++.+.  ..++.+|||+|||+|.++..+++.++ ..+|+++|+|+.+++.++++...  ....++.+..+|...
T Consensus        62 ~~~~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~--~g~~~v~~~~~d~~~  137 (317)
T 1dl5_A           62 SLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER--LGIENVIFVCGDGYY  137 (317)
T ss_dssp             HHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH--TTCCSEEEEESCGGG
T ss_pred             HHHHHHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH--cCCCCeEEEECChhh
Confidence            44455555554  45778999999999999999988764 36799999999999999988765  233458999999877


Q ss_pred             CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          155 LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .+.++++||+|+++.+++|+.      .++.++||||
T Consensus       138 ~~~~~~~fD~Iv~~~~~~~~~------~~~~~~Lkpg  168 (317)
T 1dl5_A          138 GVPEFSPYDVIFVTVGVDEVP------ETWFTQLKEG  168 (317)
T ss_dssp             CCGGGCCEEEEEECSBBSCCC------HHHHHHEEEE
T ss_pred             ccccCCCeEEEEEcCCHHHHH------HHHHHhcCCC
Confidence            554567899999999999986      5678888885

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.54  E-value=5.8e-14  Score=103.08  Aligned_cols=101  Identities=8%  Similarity=0.013  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l  155 (191)
                      .+...++..+.  ..++.+|||+|||+|.++..++.  +..+++++|+|+.+++.++++...  ....++.+..+|... 
T Consensus        22 ~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~--~~~~~~~~~~~d~~~-   94 (183)
T 2yxd_A           22 EIRAVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAK--FNIKNCQIIKGRAED-   94 (183)
T ss_dssp             HHHHHHHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHH--TTCCSEEEEESCHHH-
T ss_pred             HHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHH--cCCCcEEEEECCccc-
Confidence            34445555554  34677999999999999999988  458999999999999999998765  223568899999766 


Q ss_pred             CCCCCCcceEEeCCcccCcCChHHHHHHHHhc
Q 029554          156 PLKESSLDLAISCLGLHWTNDLPGAMIQVSIF  187 (191)
Q Consensus       156 ~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~  187 (191)
                      ++++++||+|+++.+    .+...++.++.++
T Consensus        95 ~~~~~~~D~i~~~~~----~~~~~~l~~~~~~  122 (183)
T 2yxd_A           95 VLDKLEFNKAFIGGT----KNIEKIIEILDKK  122 (183)
T ss_dssp             HGGGCCCSEEEECSC----SCHHHHHHHHHHT
T ss_pred             cccCCCCcEEEECCc----ccHHHHHHHHhhC
Confidence            556678999999988    6788899999887

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.53  E-value=2.7e-14  Score=108.11  Aligned_cols=107  Identities=8%  Similarity=-0.071  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~  153 (191)
                      ..+...++..+.  ..++.+|||+|||+|.++..++..+ +..+|+++|+|+.+++.++++...  ....++.+..+|..
T Consensus        63 ~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~~~v~~~~~d~~  138 (215)
T 2yxe_A           63 IHMVGMMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK--LGYDNVIVIVGDGT  138 (215)
T ss_dssp             HHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--HTCTTEEEEESCGG
T ss_pred             HHHHHHHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--cCCCCeEEEECCcc
Confidence            344455555554  4567899999999999999998765 447999999999999999988754  22345888888874


Q ss_pred             CCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          154 FLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       154 ~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .....+++||+|+++.+++|+.      .++.++||||
T Consensus       139 ~~~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pg  170 (215)
T 2yxe_A          139 LGYEPLAPYDRIYTTAAGPKIP------EPLIRQLKDG  170 (215)
T ss_dssp             GCCGGGCCEEEEEESSBBSSCC------HHHHHTEEEE
T ss_pred             cCCCCCCCeeEEEECCchHHHH------HHHHHHcCCC
Confidence            3322357899999999999986      4788888875

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.53  E-value=3.3e-14  Score=114.82  Aligned_cols=95  Identities=13%  Similarity=0.077  Sum_probs=81.2

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCccc
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLH  172 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~  172 (191)
                      .+|||+|||+|..+..+.+.+|..+++++|+ +.+++.++++.... ....++.++.+|+.. +++ ++||+|++..++|
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~  244 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSL-LAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIG  244 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHH-HHTTSEEEEESCTTT-CCC-SSCSEEEEESCGG
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhc-CCCCcEEEecCCCCC-CCC-CCCCEEEEchhcc
Confidence            7999999999999999998887789999999 99999998876431 113458999999876 545 6799999999999


Q ss_pred             CcCChH--HHHHHHHhccCCC
Q 029554          173 WTNDLP--GAMIQVSIFLLPD  191 (191)
Q Consensus       173 ~~~d~~--~~l~~i~r~Lkpg  191 (191)
                      ++++..  .+++++.++|+||
T Consensus       245 ~~~~~~~~~~l~~~~~~L~pg  265 (334)
T 2ip2_A          245 DLDEAASLRLLGNCREAMAGD  265 (334)
T ss_dssp             GCCHHHHHHHHHHHHHHSCTT
T ss_pred             CCCHHHHHHHHHHHHHhcCCC
Confidence            887666  8999999999997

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.53  E-value=1.6e-14  Score=114.01  Aligned_cols=101  Identities=11%  Similarity=0.015  Sum_probs=77.3

Q ss_pred             CCCeEEEEcCCccH----HHHHHhhcCC----CceEEEEECChhHHHHHHHhhhhc------------------cC--CC
Q 029554           91 TFPTALCLGGSLEA----VRRLLRGRGG----IEKLIMMDTSYDMLKLCKDAQQDA------------------HN--DN  142 (191)
Q Consensus        91 ~~~~VLDlGcG~G~----~~~~l~~~~~----~~~v~~vD~s~~~l~~a~~~~~~~------------------~~--~~  142 (191)
                      +..+|||+|||+|.    ++..|.+..+    ..+|+|+|+|+.|++.|++.....                  ..  ..
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            34689999999998    4555555422    358999999999999999864100                  00  00


Q ss_pred             ---------CceeeEecCCCCCCCC-CCCcceEEeCCcccCcCCh--HHHHHHHHhccCCC
Q 029554          143 ---------IETCFVVGDEEFLPLK-ESSLDLAISCLGLHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       143 ---------~~~~~~~~d~~~l~~~-~~~fDlVis~~~l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                               .++.|.++|+...|++ .++||+|+|.++++|+++.  ..++.++.++|+||
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pg  245 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPD  245 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEE
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCC
Confidence                     2588999998876654 5789999999999999755  68999999999986

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.53  E-value=3.5e-14  Score=107.07  Aligned_cols=97  Identities=8%  Similarity=-0.060  Sum_probs=77.9

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCCCCCCcceEEeCC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKESSLDLAISCL  169 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~~~~~fDlVis~~  169 (191)
                      ++.+|||+|||+|.++..+...+ ..+|+++|+|+.|++.++++...  ....++.++++|+.. ++..+++||+|+++.
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~--~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~  130 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLAT--LKAGNARVVNSNAMSFLAQKGTPHNIVFVDP  130 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHH--TTCCSEEEECSCHHHHHSSCCCCEEEEEECC
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHH--cCCCcEEEEECCHHHHHhhcCCCCCEEEECC
Confidence            56799999999999999876655 35899999999999999988865  222578999999765 555667899999987


Q ss_pred             cccCcCChHHHHHHHHh--ccCCC
Q 029554          170 GLHWTNDLPGAMIQVSI--FLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r--~Lkpg  191 (191)
                      .++ ..+...++..+.+  +|+||
T Consensus       131 p~~-~~~~~~~l~~l~~~~~L~pg  153 (202)
T 2fpo_A          131 PFR-RGLLEETINLLEDNGWLADE  153 (202)
T ss_dssp             SSS-TTTHHHHHHHHHHTTCEEEE
T ss_pred             CCC-CCcHHHHHHHHHhcCccCCC
Confidence            754 5677888888866  58875

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.53  E-value=3.6e-14  Score=111.56  Aligned_cols=112  Identities=13%  Similarity=0.120  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCc---cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSL---EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~---G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~  153 (191)
                      ...+.+..+.. .....+|||||||+   |.....+....|..+|+++|.|+.|++.+++++..  ....++.++++|+.
T Consensus        65 fl~rav~~l~~-~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~--~~~~~~~~v~aD~~  141 (277)
T 3giw_A           65 WMNRAVAHLAK-EAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAS--TPEGRTAYVEADML  141 (277)
T ss_dssp             HHHHHHHHHHH-TSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCC--CSSSEEEEEECCTT
T ss_pred             HHHHHHHHhcc-ccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhcc--CCCCcEEEEEeccc
Confidence            34444444442 12346899999997   44555555556778999999999999999988753  22346899999987


Q ss_pred             CCC----CC--CCCcc-----eEEeCCcccCcCC---hHHHHHHHHhccCCC
Q 029554          154 FLP----LK--ESSLD-----LAISCLGLHWTND---LPGAMIQVSIFLLPD  191 (191)
Q Consensus       154 ~l~----~~--~~~fD-----lVis~~~l~~~~d---~~~~l~~i~r~Lkpg  191 (191)
                      .++    .+  .+.||     .|+++.+|||++|   +..+++++.++|+||
T Consensus       142 ~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PG  193 (277)
T 3giw_A          142 DPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSG  193 (277)
T ss_dssp             CHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTT
T ss_pred             ChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCC
Confidence            642    11  24565     5899999999987   568999999999997

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.53  E-value=4.4e-14  Score=117.84  Aligned_cols=113  Identities=12%  Similarity=-0.043  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHH-------HHhhhhccCCCCceeeE
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLC-------KDAQQDAHNDNIETCFV  148 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a-------~~~~~~~~~~~~~~~~~  148 (191)
                      .+...+++.+.  ..++.+|||||||+|.++..++..++..+|+|+|+|+.+++.|       +++....+-...++.++
T Consensus       229 ~~v~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i  306 (433)
T 1u2z_A          229 NFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS  306 (433)
T ss_dssp             HHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred             HHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE
Confidence            44455665554  4577899999999999999998865556899999999999888       66665421113568888


Q ss_pred             ecCCCCC--CC--CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          149 VGDEEFL--PL--KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       149 ~~d~~~l--~~--~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++|....  ++  ..++||+|+++..+ +.+++...+.++.++||||
T Consensus       307 ~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpG  352 (433)
T 1u2z_A          307 LKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVG  352 (433)
T ss_dssp             ESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTT
T ss_pred             EcCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCC
Confidence            8753321  22  24689999998777 4568888999999999997

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.53  E-value=1e-14  Score=118.65  Aligned_cols=107  Identities=14%  Similarity=0.080  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~  157 (191)
                      ...+++.+.  ..+..+|||+|||+|.++..+++.++..+|+++|+|+.+++.++++...   ......++.+|....+ 
T Consensus       185 ~~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~---~~~~~~~~~~d~~~~~-  258 (343)
T 2pjd_A          185 SQLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAA---NGVEGEVFASNVFSEV-  258 (343)
T ss_dssp             HHHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHH---TTCCCEEEECSTTTTC-
T ss_pred             HHHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH---hCCCCEEEEccccccc-
Confidence            334454443  2356789999999999999999888777999999999999999998764   2223567788876543 


Q ss_pred             CCCCcceEEeCCcccC-----cCChHHHHHHHHhccCCC
Q 029554          158 KESSLDLAISCLGLHW-----TNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~-----~~d~~~~l~~i~r~Lkpg  191 (191)
                       +++||+|+++..+|+     ..+...++.++.++||||
T Consensus       259 -~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkpg  296 (343)
T 2pjd_A          259 -KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSG  296 (343)
T ss_dssp             -CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEE
T ss_pred             -cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCC
Confidence             578999999999986     345678999999999986

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.52  E-value=6.6e-14  Score=107.71  Aligned_cols=98  Identities=7%  Similarity=0.045  Sum_probs=80.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC-CCCCCcceEEe
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP-LKESSLDLAIS  167 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~-~~~~~fDlVis  167 (191)
                      .++.+|||+|||+|..+..++..++..+|+++|+|+.+++.+++++... ....++.++++|... ++ ..+++||+|++
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  148 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATY-HFENQVRIIEGNALEQFENVNDKVYDMIFI  148 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHT-TCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence            3678999999999999999998766789999999999999999988651 222479999999765 33 33688999998


Q ss_pred             CCcccCcCChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ...   ..+...++.++.++||||
T Consensus       149 ~~~---~~~~~~~l~~~~~~Lkpg  169 (232)
T 3ntv_A          149 DAA---KAQSKKFFEIYTPLLKHQ  169 (232)
T ss_dssp             ETT---SSSHHHHHHHHGGGEEEE
T ss_pred             cCc---HHHHHHHHHHHHHhcCCC
Confidence            754   456788999999999986

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.51  E-value=3.8e-14  Score=111.73  Aligned_cols=95  Identities=15%  Similarity=0.055  Sum_probs=80.1

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccC-CCCceeeEecCCCCCCCCCCCcceEE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHN-DNIETCFVVGDEEFLPLKESSLDLAI  166 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~~~~d~~~l~~~~~~fDlVi  166 (191)
                      ..++.+|||+|||+|.++..+++. ++..+|+++|+|+.+++.++++...  . ...++.+.++|+.. ++++++||+|+
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~g~~~v~~~~~d~~~-~~~~~~fD~Vi  184 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE--FYDIGNVRTSRSDIAD-FISDQMYDAVI  184 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT--TSCCTTEEEECSCTTT-CCCSCCEEEEE
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh--cCCCCcEEEEECchhc-cCcCCCccEEE
Confidence            346779999999999999999886 5568999999999999999988764  2 23568999999876 55668899999


Q ss_pred             eCCcccCcCChHHHHHHHHhccCCC
Q 029554          167 SCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +     +++++..++.++.++||||
T Consensus       185 ~-----~~~~~~~~l~~~~~~Lkpg  204 (275)
T 1yb2_A          185 A-----DIPDPWNHVQKIASMMKPG  204 (275)
T ss_dssp             E-----CCSCGGGSHHHHHHTEEEE
T ss_pred             E-----cCcCHHHHHHHHHHHcCCC
Confidence            8     4668889999999999985

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.50  E-value=2e-13  Score=111.19  Aligned_cols=98  Identities=15%  Similarity=0.105  Sum_probs=80.0

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||||||+|.++..+++.+ ..+|+++|+|+ |++.++++... .+...++.++.+|++.++++ ++||+|+++.
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~-~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~  124 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKS-NNLTDRIVVIPGKVEEVSLP-EQVDIIISEP  124 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHH-TTCTTTEEEEESCTTTCCCS-SCEEEEEECC
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCC-CCEEEEECCHH-HHHHHHHHHHH-cCCCCcEEEEEcchhhCCCC-CceeEEEEeC
Confidence            467899999999999999998864 46999999996 88888887754 12235799999999988765 6799999998


Q ss_pred             cccCcC--ChHHHHHHHHhccCCC
Q 029554          170 GLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      .++|+.  +....+.++.++||||
T Consensus       125 ~~~~~~~~~~~~~l~~~~~~Lkpg  148 (348)
T 2y1w_A          125 MGYMLFNERMLESYLHAKKYLKPS  148 (348)
T ss_dssp             CBTTBTTTSHHHHHHHGGGGEEEE
T ss_pred             chhcCChHHHHHHHHHHHhhcCCC
Confidence            877663  4568888999999986

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.50  E-value=7.9e-14  Score=108.24  Aligned_cols=105  Identities=14%  Similarity=0.065  Sum_probs=85.5

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~  157 (191)
                      ..++..+.  ..++.+|||+|||+|.++..++.. +|..+|+++|+|+.+++.++++..... ...++.+..+|+...++
T Consensus        86 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-g~~~v~~~~~d~~~~~~  162 (258)
T 2pwy_A           86 SAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFW-QVENVRFHLGKLEEAEL  162 (258)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC-CCCCEEEEESCGGGCCC
T ss_pred             HHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhc-CCCCEEEEECchhhcCC
Confidence            44555444  457789999999999999999887 556899999999999999998876520 24568999999888777


Q ss_pred             CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          158 KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++++||+|+++     .+++..++.++.++|+||
T Consensus       163 ~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~g  191 (258)
T 2pwy_A          163 EEAAYDGVALD-----LMEPWKVLEKAALALKPD  191 (258)
T ss_dssp             CTTCEEEEEEE-----SSCGGGGHHHHHHHEEEE
T ss_pred             CCCCcCEEEEC-----CcCHHHHHHHHHHhCCCC
Confidence            77899999983     457788999999999985

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.50  E-value=7.5e-14  Score=103.14  Aligned_cols=108  Identities=17%  Similarity=0.106  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      ..+...++..+.  ..++.+|||+|||+|.++..++..+  .+|+++|+|+.+++.++++.... ....++.+..+|...
T Consensus        19 ~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~   93 (192)
T 1l3i_A           19 MEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRH-GLGDNVTLMEGDAPE   93 (192)
T ss_dssp             HHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHT-TCCTTEEEEESCHHH
T ss_pred             HHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHc-CCCcceEEEecCHHH
Confidence            334444555554  4567899999999999999999887  89999999999999999887541 112468888888654


Q ss_pred             CCCCC-CCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          155 LPLKE-SSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 l~~~~-~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                       +++. ++||+|+++.+++   +...++.++.++|+||
T Consensus        94 -~~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~g  127 (192)
T 1l3i_A           94 -ALCKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPG  127 (192)
T ss_dssp             -HHTTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEE
T ss_pred             -hcccCCCCCEEEECCchH---HHHHHHHHHHHhcCCC
Confidence             2222 5899999998876   4588999999999985

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.50  E-value=5e-14  Score=110.05  Aligned_cols=99  Identities=11%  Similarity=0.047  Sum_probs=78.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlVis~  168 (191)
                      ++.+|||+|||+|.++..++..++ .+|+++|+++.+++.++++... .+...++.++++|+..++  +++++||+|++|
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~-~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~n  126 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAY-NQLEDQIEIIEYDLKKITDLIPKERADIVTCN  126 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHH-TTCTTTEEEECSCGGGGGGTSCTTCEEEEEEC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHH-CCCcccEEEEECcHHHhhhhhccCCccEEEEC
Confidence            678999999999999999998874 3999999999999999998865 122346899999987654  457899999998


Q ss_pred             CcccCc--------------------CChHHHHHHHHhccCCC
Q 029554          169 LGLHWT--------------------NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~--------------------~d~~~~l~~i~r~Lkpg  191 (191)
                      -.+...                    .+...++.++.++||||
T Consensus       127 pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg  169 (259)
T 3lpm_A          127 PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQG  169 (259)
T ss_dssp             CCC-----------------------HHHHHHHHHHHHHEEEE
T ss_pred             CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCC
Confidence            654332                    13457899999999985

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.50  E-value=9.9e-14  Score=113.10  Aligned_cols=98  Identities=16%  Similarity=0.100  Sum_probs=81.5

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .+..+|||+|||+|.++..+.+.++..+++++|+ +.+++.++++.... +...++.++.+|+.. +++. .||+|+++.
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~  257 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE-GLSDRVDVVEGDFFE-PLPR-KADAIILSF  257 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT-TCTTTEEEEECCTTS-CCSS-CEEEEEEES
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhc-CCCCceEEEeCCCCC-CCCC-CccEEEEcc
Confidence            3567999999999999999998887789999999 99999999887541 223469999999764 3343 499999999


Q ss_pred             cccCcCCh--HHHHHHHHhccCCC
Q 029554          170 GLHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      ++||+++.  ..+++++.++|+||
T Consensus       258 vl~~~~~~~~~~~l~~~~~~L~pg  281 (360)
T 1tw3_A          258 VLLNWPDHDAVRILTRCAEALEPG  281 (360)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTEEEE
T ss_pred             cccCCCHHHHHHHHHHHHHhcCCC
Confidence            99999876  47999999999986

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.50  E-value=1.7e-13  Score=106.43  Aligned_cols=107  Identities=12%  Similarity=0.038  Sum_probs=82.3

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPL  157 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~  157 (191)
                      .++..+.. ..++.+|||+|||+|..+..++...+ ..+|+++|+|+.+++.+++++... +...++.++++|... ++.
T Consensus        53 ~~l~~l~~-~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-g~~~~v~~~~~d~~~~l~~  130 (248)
T 3tfw_A           53 QFLALLVR-LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLA-GVDQRVTLREGPALQSLES  130 (248)
T ss_dssp             HHHHHHHH-HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHT-TCTTTEEEEESCHHHHHHT
T ss_pred             HHHHHHHh-hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEEcCHHHHHHh
Confidence            34444432 33678999999999999999998765 689999999999999999987651 223468999999654 332


Q ss_pred             --CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          158 --KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       158 --~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                        ..++||+|++...   ..+...++.++.++||||
T Consensus       131 ~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpG  163 (248)
T 3tfw_A          131 LGECPAFDLIFIDAD---KPNNPHYLRWALRYSRPG  163 (248)
T ss_dssp             CCSCCCCSEEEECSC---GGGHHHHHHHHHHTCCTT
T ss_pred             cCCCCCeEEEEECCc---hHHHHHHHHHHHHhcCCC
Confidence              2358999998664   446678999999999997

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.49  E-value=2e-13  Score=104.49  Aligned_cols=96  Identities=14%  Similarity=0.081  Sum_probs=76.9

Q ss_pred             CCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCC-CceeeEecCCCC-CC-CCCCCcceEEe
Q 029554           92 FPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEF-LP-LKESSLDLAIS  167 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~d~~~-l~-~~~~~fDlVis  167 (191)
                      ..+|||+|||+|..+..++... +..+|+++|+|+.+++.+++++... +.. .++.++++|... ++ +++++||+|++
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~  135 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREA-GYSPSRVRFLLSRPLDVMSRLANDSYQLVFG  135 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHT-TCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence            3489999999999999998764 3689999999999999999988652 222 479999998653 32 33688999998


Q ss_pred             CCcccCcCChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ...   ..+...++.++.++||||
T Consensus       136 d~~---~~~~~~~l~~~~~~LkpG  156 (221)
T 3dr5_A          136 QVS---PMDLKALVDAAWPLLRRG  156 (221)
T ss_dssp             CCC---TTTHHHHHHHHHHHEEEE
T ss_pred             cCc---HHHHHHHHHHHHHHcCCC
Confidence            764   346678999999999986

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.49  E-value=7.7e-14  Score=107.37  Aligned_cols=105  Identities=11%  Similarity=0.063  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      ..+...+++.+.  ..++.+|||+|||+|.++..+++.++ .+|+++|+++.+++.++++...  ....++.+..+|. .
T Consensus        77 ~~~~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~--~~~~~v~~~~~d~-~  150 (235)
T 1jg1_A           77 PHMVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLER--AGVKNVHVILGDG-S  150 (235)
T ss_dssp             HHHHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHH--TTCCSEEEEESCG-G
T ss_pred             HHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHH--cCCCCcEEEECCc-c
Confidence            344556666554  45677999999999999999988765 7999999999999999988764  2334588888886 3


Q ss_pred             CCCCC-CCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          155 LPLKE-SSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 l~~~~-~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .++++ ++||+|+++.+++++.+      ++.++|+||
T Consensus       151 ~~~~~~~~fD~Ii~~~~~~~~~~------~~~~~L~pg  182 (235)
T 1jg1_A          151 KGFPPKAPYDVIIVTAGAPKIPE------PLIEQLKIG  182 (235)
T ss_dssp             GCCGGGCCEEEEEECSBBSSCCH------HHHHTEEEE
T ss_pred             cCCCCCCCccEEEECCcHHHHHH------HHHHhcCCC
Confidence            33343 35999999999998853      678888875

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.49  E-value=1.5e-13  Score=109.01  Aligned_cols=95  Identities=13%  Similarity=0.131  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~  153 (191)
                      ...+...+++.+.  ..++.+|||+|||+|.++..|++.+  .+|+++|+|+.|++.++++.... ....++.++++|+.
T Consensus        13 d~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~~D~~   87 (285)
T 1zq9_A           13 NPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGT-PVASKLQVLVGDVL   87 (285)
T ss_dssp             CHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTS-TTGGGEEEEESCTT
T ss_pred             CHHHHHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhc-CCCCceEEEEccee
Confidence            4456666776665  3467799999999999999999887  79999999999999999887431 11246899999998


Q ss_pred             CCCCCCCCcceEEeCCcccCcC
Q 029554          154 FLPLKESSLDLAISCLGLHWTN  175 (191)
Q Consensus       154 ~l~~~~~~fDlVis~~~l~~~~  175 (191)
                      .++++  +||+|++|...++..
T Consensus        88 ~~~~~--~fD~vv~nlpy~~~~  107 (285)
T 1zq9_A           88 KTDLP--FFDTCVANLPYQISS  107 (285)
T ss_dssp             TSCCC--CCSEEEEECCGGGHH
T ss_pred             cccch--hhcEEEEecCcccch
Confidence            87765  799999998777653

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.49  E-value=1.1e-13  Score=107.50  Aligned_cols=107  Identities=14%  Similarity=0.012  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      .....++..+.  ..++.+|||+|||+|.++..++.. +|..+++++|+|+.+++.++++.... ....++.+..+|+..
T Consensus        80 ~~~~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~  156 (255)
T 3mb5_A           80 KDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA-GFDDRVTIKLKDIYE  156 (255)
T ss_dssp             HHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH-TCTTTEEEECSCGGG
T ss_pred             hHHHHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHc-CCCCceEEEECchhh
Confidence            33345555444  457789999999999999999887 66799999999999999999987652 122348999999774


Q ss_pred             CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          155 LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      . +++++||+|+++     .+++..++.++.++|+||
T Consensus       157 ~-~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~g  187 (255)
T 3mb5_A          157 G-IEEENVDHVILD-----LPQPERVVEHAAKALKPG  187 (255)
T ss_dssp             C-CCCCSEEEEEEC-----SSCGGGGHHHHHHHEEEE
T ss_pred             c-cCCCCcCEEEEC-----CCCHHHHHHHHHHHcCCC
Confidence            4 567889999984     457788999999999985

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.49  E-value=2.4e-14  Score=104.29  Aligned_cols=94  Identities=14%  Similarity=0.062  Sum_probs=75.0

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC-C--CCCCcceEE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP-L--KESSLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~-~--~~~~fDlVi  166 (191)
                      ++.+|||+|||+|.++..++..+  .+++++|+|+.+++.++++....  .. ++.++++|+.. ++ .  ..++||+|+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~d~~~~~~~~~~~~~~~D~i~  115 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRT--GL-GARVVALPVEVFLPEAKAQGERFTVAF  115 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHH--TC-CCEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHc--CC-ceEEEeccHHHHHHhhhccCCceEEEE
Confidence            56789999999999999999887  45999999999999999887642  22 68888888664 22 1  134799999


Q ss_pred             eCCcccCcCChHHHHHHHH--hccCCC
Q 029554          167 SCLGLHWTNDLPGAMIQVS--IFLLPD  191 (191)
Q Consensus       167 s~~~l~~~~d~~~~l~~i~--r~Lkpg  191 (191)
                      ++..++  .+....+..+.  ++|+||
T Consensus       116 ~~~~~~--~~~~~~~~~~~~~~~L~~g  140 (171)
T 1ws6_A          116 MAPPYA--MDLAALFGELLASGLVEAG  140 (171)
T ss_dssp             ECCCTT--SCTTHHHHHHHHHTCEEEE
T ss_pred             ECCCCc--hhHHHHHHHHHhhcccCCC
Confidence            998766  56677778887  999885

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.49  E-value=1.2e-14  Score=119.44  Aligned_cols=90  Identities=11%  Similarity=0.029  Sum_probs=72.1

Q ss_pred             cCCCeEEEEcCC------ccHHHHHHh-hcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC----
Q 029554           90 KTFPTALCLGGS------LEAVRRLLR-GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK----  158 (191)
Q Consensus        90 ~~~~~VLDlGcG------~G~~~~~l~-~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~----  158 (191)
                      ....+|||||||      +|..+..+. ..+|..+|+|+|+|+.|.      .     ...++.++++|...+++.    
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~-----~~~rI~fv~GDa~dlpf~~~l~  283 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V-----DELRIRTIQGDQNDAEFLDRIA  283 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G-----CBTTEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h-----cCCCcEEEEecccccchhhhhh
Confidence            356799999999      555555454 445778999999999983      1     234699999999988776    


Q ss_pred             --CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          159 --ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 --~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                        +++||+|+++. .|+..+...+|.++.++||||
T Consensus       284 ~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPG  317 (419)
T 3sso_A          284 RRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPG  317 (419)
T ss_dssp             HHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEE
T ss_pred             cccCCccEEEECC-cccchhHHHHHHHHHHhcCCC
Confidence              68999999975 477778899999999999996

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.48  E-value=4.7e-14  Score=109.53  Aligned_cols=101  Identities=12%  Similarity=-0.053  Sum_probs=75.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhc--CCCceEEEEECChhHHHHHHHhhhhccC-CCC-c----------------------
Q 029554           91 TFPTALCLGGSLEAVRRLLRGR--GGIEKLIMMDTSYDMLKLCKDAQQDAHN-DNI-E----------------------  144 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~--~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~-~----------------------  144 (191)
                      ++.+|||+|||+|.++..++..  .+..+|+|+|+|+.+++.|+++...... ... +                      
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            4568999999999999999876  4457999999999999999977643100 000 1                      


Q ss_pred             ---ee-------------eEecCCCCCCC-----CCCCcceEEeCCcccCcCC---------hHHHHHHHHhccCCC
Q 029554          145 ---TC-------------FVVGDEEFLPL-----KESSLDLAISCLGLHWTND---------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       145 ---~~-------------~~~~d~~~l~~-----~~~~fDlVis~~~l~~~~d---------~~~~l~~i~r~Lkpg  191 (191)
                         +.             +.++|+.....     ...+||+|+++..+++..+         ...++.++.++|+||
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  207 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH  207 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCC
Confidence               55             88899765321     3348999999977665543         348899999999997

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.48  E-value=6.4e-14  Score=103.50  Aligned_cols=109  Identities=14%  Similarity=0.103  Sum_probs=80.8

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC---
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL---  155 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l---  155 (191)
                      ..+++.+.. ..++.+|||+|||+|.++..+...+ ..+|+++|+|+.+++.++++.... +...++.++++|+...   
T Consensus        33 ~~~~~~l~~-~~~~~~vLD~GcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~  109 (187)
T 2fhp_A           33 ESIFNMIGP-YFDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAIT-KEPEKFEVRKMDANRALEQ  109 (187)
T ss_dssp             HHHHHHHCS-CCSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHH-TCGGGEEEEESCHHHHHHH
T ss_pred             HHHHHHHHh-hcCCCCEEEeCCccCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHh-CCCcceEEEECcHHHHHHH
Confidence            344444432 2356799999999999999887753 479999999999999999887541 1224688999997652   


Q ss_pred             -CCCCCCcceEEeCCcccCcCChHHHHHHH--HhccCCC
Q 029554          156 -PLKESSLDLAISCLGLHWTNDLPGAMIQV--SIFLLPD  191 (191)
Q Consensus       156 -~~~~~~fDlVis~~~l~~~~d~~~~l~~i--~r~Lkpg  191 (191)
                       +.++++||+|+++..++ ..+....+..+  .++|+||
T Consensus       110 ~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~g  147 (187)
T 2fhp_A          110 FYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNE  147 (187)
T ss_dssp             HHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEE
T ss_pred             HHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCC
Confidence             22357899999998754 45677788888  8889885

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.48  E-value=1.2e-13  Score=108.94  Aligned_cols=99  Identities=16%  Similarity=0.076  Sum_probs=78.0

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|..+..++...+..+|+++|+|+.+++.++++...  ....++.++++|.... +++++||+|+++.
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~--~~~~~v~~~~~d~~~~-~~~~~fD~Iv~np  184 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH--LAIKNIHILQSDWFSA-LAGQQFAMIVSNP  184 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH--HTCCSEEEECCSTTGG-GTTCCEEEEEECC
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--cCCCceEEEEcchhhh-cccCCccEEEECC
Confidence            356799999999999999998776778999999999999999988764  2223689999997653 3457899999984


Q ss_pred             cc-------------cCcC------------ChHHHHHHHHhccCCC
Q 029554          170 GL-------------HWTN------------DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l-------------~~~~------------d~~~~l~~i~r~Lkpg  191 (191)
                      ..             +|.+            +...++.++.++|+||
T Consensus       185 Py~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkpg  231 (276)
T 2b3t_A          185 PYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSG  231 (276)
T ss_dssp             CCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEE
T ss_pred             CCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCC
Confidence            33             3322            3467889999999985

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.48  E-value=2.5e-14  Score=105.17  Aligned_cols=109  Identities=8%  Similarity=0.028  Sum_probs=80.1

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPL  157 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~  157 (191)
                      ..+.+.+.. ..++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.++++.... +...++.++.+|+.. ++.
T Consensus        20 ~~~~~~l~~-~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~   96 (177)
T 2esr_A           20 GAIFNMIGP-YFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMT-KAENRFTLLKMEAERAIDC   96 (177)
T ss_dssp             HHHHHHHCS-CCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTT-TCGGGEEEECSCHHHHHHH
T ss_pred             HHHHHHHHh-hcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHc-CCCCceEEEECcHHHhHHh
Confidence            344444432 235679999999999999988877 3479999999999999999887641 122368899999765 343


Q ss_pred             CCCCcceEEeCCcccCcCChHHHHHHHH--hccCCC
Q 029554          158 KESSLDLAISCLGLHWTNDLPGAMIQVS--IFLLPD  191 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~d~~~~l~~i~--r~Lkpg  191 (191)
                      .+++||+|+++..+++ .+....+..+.  ++|+||
T Consensus        97 ~~~~fD~i~~~~~~~~-~~~~~~~~~l~~~~~L~~g  131 (177)
T 2esr_A           97 LTGRFDLVFLDPPYAK-ETIVATIEALAAKNLLSEQ  131 (177)
T ss_dssp             BCSCEEEEEECCSSHH-HHHHHHHHHHHHTTCEEEE
T ss_pred             hcCCCCEEEECCCCCc-chHHHHHHHHHhCCCcCCC
Confidence            3467999999877542 34567777776  888885

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.48  E-value=8.9e-14  Score=113.13  Aligned_cols=94  Identities=12%  Similarity=0.005  Sum_probs=74.9

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      +..+|||||||+|..+..+++.+|..+++++|++ .++.  +++... .....++.++.+|+. .+++  +||+|++..+
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~-~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~v  256 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDA-PDVAGRWKVVEGDFL-REVP--HADVHVLKRI  256 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCC-GGGTTSEEEEECCTT-TCCC--CCSEEEEESC
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccc-cCCCCCeEEEecCCC-CCCC--CCcEEEEehh
Confidence            4669999999999999999998888899999994 4444  222211 112346899999985 3334  7999999999


Q ss_pred             ccCcCCh--HHHHHHHHhccCCC
Q 029554          171 LHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      +||++|.  ..+++++.++||||
T Consensus       257 lh~~~d~~~~~~L~~~~~~Lkpg  279 (348)
T 3lst_A          257 LHNWGDEDSVRILTNCRRVMPAH  279 (348)
T ss_dssp             GGGSCHHHHHHHHHHHHHTCCTT
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCC
Confidence            9999887  68999999999997

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.48  E-value=4.8e-14  Score=102.68  Aligned_cols=90  Identities=19%  Similarity=0.156  Sum_probs=75.5

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--------CCC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LKE  159 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--------~~~  159 (191)
                      ..++.+|||+|||+|.++..+.+. ++..+++++|+|+ +++.            .++.+.++|....+        +++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~------------~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI------------VGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC------------TTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc------------CcEEEEEcccccchhhhhhhccCCC
Confidence            346779999999999999999887 4558999999999 7532            34788899988765        677


Q ss_pred             CCcceEEeCCcccCcCCh-----------HHHHHHHHhccCCC
Q 029554          160 SSLDLAISCLGLHWTNDL-----------PGAMIQVSIFLLPD  191 (191)
Q Consensus       160 ~~fDlVis~~~l~~~~d~-----------~~~l~~i~r~Lkpg  191 (191)
                      ++||+|+++..+++..+.           ..++.++.++|+||
T Consensus        87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g  129 (180)
T 1ej0_A           87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG  129 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCC
Confidence            899999999999988776           68899999999985

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.47  E-value=1.7e-13  Score=107.74  Aligned_cols=109  Identities=17%  Similarity=0.047  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhc-cCCCCceeeEecCCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDA-HNDNIETCFVVGDEE  153 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~-~~~~~~~~~~~~d~~  153 (191)
                      .....++..+.  ..++.+|||+|||+|.++..++.. ++..+|+++|+|+.+++.++++.... +....++.+..+|+.
T Consensus        86 ~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~  163 (280)
T 1i9g_A           86 KDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA  163 (280)
T ss_dssp             HHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG
T ss_pred             HHHHHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchH
Confidence            33445555554  457789999999999999999874 45689999999999999999887642 112356899999988


Q ss_pred             CCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          154 FLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       154 ~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ..++++++||+|+++     ..++..++.++.++|+||
T Consensus       164 ~~~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~pg  196 (280)
T 1i9g_A          164 DSELPDGSVDRAVLD-----MLAPWEVLDAVSRLLVAG  196 (280)
T ss_dssp             GCCCCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEE
T ss_pred             hcCCCCCceeEEEEC-----CcCHHHHHHHHHHhCCCC
Confidence            877777899999984     457778999999999985

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.47  E-value=1.5e-13  Score=104.97  Aligned_cols=109  Identities=9%  Similarity=-0.046  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-----CCceEEEEECChhHHHHHHHhhhhccC---CCCceeeE
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-----GIEKLIMMDTSYDMLKLCKDAQQDAHN---DNIETCFV  148 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-----~~~~v~~vD~s~~~l~~a~~~~~~~~~---~~~~~~~~  148 (191)
                      +...+++.+.....++.+|||+|||+|.++..+++..     +..+|+++|+++.+++.++++......   ...++.+.
T Consensus        66 ~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  145 (227)
T 2pbf_A           66 MHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKII  145 (227)
T ss_dssp             HHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEE
T ss_pred             HHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEE
Confidence            3345555553224467899999999999999998865     346999999999999999988764210   03468899


Q ss_pred             ecCCCCCC----CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          149 VGDEEFLP----LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       149 ~~d~~~l~----~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .+|.....    ...++||+|+++.+++++      +.++.++|+||
T Consensus       146 ~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~Lkpg  186 (227)
T 2pbf_A          146 HKNIYQVNEEEKKELGLFDAIHVGASASEL------PEILVDLLAEN  186 (227)
T ss_dssp             ECCGGGCCHHHHHHHCCEEEEEECSBBSSC------CHHHHHHEEEE
T ss_pred             ECChHhcccccCccCCCcCEEEECCchHHH------HHHHHHhcCCC
Confidence            99977654    456789999999999876      36778888875

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.47  E-value=1.6e-13  Score=106.38  Aligned_cols=101  Identities=11%  Similarity=0.057  Sum_probs=78.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc--C----CCCceeeEecCCCC-CC--CCCCC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--N----DNIETCFVVGDEEF-LP--LKESS  161 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~----~~~~~~~~~~d~~~-l~--~~~~~  161 (191)
                      ++.+|||+|||+|.++..++..++..+|+|+|+|+.+++.++++.....  +    ...++.++.+|+.. ++  ++.++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            5678999999999999999998877799999999999999988765310  0    23578999999775 55  67789


Q ss_pred             cceEEeCCcccCcCC--------hHHHHHHHHhccCCC
Q 029554          162 LDLAISCLGLHWTND--------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       162 fDlVis~~~l~~~~d--------~~~~l~~i~r~Lkpg  191 (191)
                      +|.|+.++.-.|...        ...++.++.++|+||
T Consensus       129 ~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkpg  166 (246)
T 2vdv_E          129 LSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEG  166 (246)
T ss_dssp             EEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEE
T ss_pred             cCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCC
Confidence            999986653332211        148999999999986

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.47  E-value=1.1e-13  Score=112.65  Aligned_cols=88  Identities=14%  Similarity=0.090  Sum_probs=75.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      +..+|||||||+|..+..+.+.+|..+++++|+ +.+++.+++        ..++.++.+|+.. +++  .||+|+++.+
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~-~~p--~~D~v~~~~~  255 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG--------SNNLTYVGGDMFT-SIP--NADAVLLKYI  255 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--------BTTEEEEECCTTT-CCC--CCSEEEEESC
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc--------CCCcEEEeccccC-CCC--CccEEEeehh
Confidence            457999999999999999998888789999999 999877643        1238999999865 544  3999999999


Q ss_pred             ccCcCChH--HHHHHHHhccCC
Q 029554          171 LHWTNDLP--GAMIQVSIFLLP  190 (191)
Q Consensus       171 l~~~~d~~--~~l~~i~r~Lkp  190 (191)
                      +||++|..  .+++++.++|||
T Consensus       256 lh~~~d~~~~~~l~~~~~~L~p  277 (352)
T 1fp2_A          256 LHNWTDKDCLRILKKCKEAVTN  277 (352)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHSG
T ss_pred             hccCCHHHHHHHHHHHHHhCCC
Confidence            99998877  999999999999

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.47  E-value=1.3e-13  Score=113.10  Aligned_cols=89  Identities=18%  Similarity=0.043  Sum_probs=77.0

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      +..+|||||||+|..+..+.+.+|..+++++|+ +.+++.+++        ..++.++.+|+.. +++.  ||+|+++.+
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~-~~~~--~D~v~~~~~  276 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP--------LSGIEHVGGDMFA-SVPQ--GDAMILKAV  276 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--------CTTEEEEECCTTT-CCCC--EEEEEEESS
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh--------cCCCEEEeCCccc-CCCC--CCEEEEecc
Confidence            457999999999999999999888889999999 888876642        2348999999876 5554  999999999


Q ss_pred             ccCcCChH--HHHHHHHhccCCC
Q 029554          171 LHWTNDLP--GAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~~--~~l~~i~r~Lkpg  191 (191)
                      +||++|..  .+++++.++|+||
T Consensus       277 lh~~~d~~~~~~l~~~~~~L~pg  299 (372)
T 1fp1_D          277 CHNWSDEKCIEFLSNCHKALSPN  299 (372)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             cccCCHHHHHHHHHHHHHhcCCC
Confidence            99999887  9999999999986

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.47  E-value=2.4e-13  Score=106.43  Aligned_cols=102  Identities=10%  Similarity=0.032  Sum_probs=79.9

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhc--cCCCCceeeEecCCCCC-------CCCCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEFL-------PLKES  160 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~~~~~d~~~l-------~~~~~  160 (191)
                      .++.+|||+|||+|.++..++.+++..+|+++|+++.+++.++++....  .+...++.++++|+...       +++++
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  114 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE  114 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence            3567999999999999999999887789999999999999999887420  11223589999998766       35678


Q ss_pred             CcceEEeCCcccCc------------------CChHHHHHHHHhccCCC
Q 029554          161 SLDLAISCLGLHWT------------------NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       161 ~fDlVis~~~l~~~------------------~d~~~~l~~i~r~Lkpg  191 (191)
                      +||+|++|-.....                  .+...++.++.++||||
T Consensus       115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg  163 (260)
T 2ozv_A          115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSG  163 (260)
T ss_dssp             CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEE
T ss_pred             CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCC
Confidence            99999998433221                  24678899999999985

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.47  E-value=1.6e-13  Score=105.32  Aligned_cols=112  Identities=11%  Similarity=-0.016  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~  153 (191)
                      .......+...+.  ..++.+|||+|||+|..+..++...|..+|+++|+|+.+++.+++++... ....++.+..+|..
T Consensus        39 ~~~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~  115 (233)
T 2gpy_A           39 DLLGMESLLHLLK--MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKAL-GLESRIELLFGDAL  115 (233)
T ss_dssp             CHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHT-TCTTTEEEECSCGG
T ss_pred             CHHHHHHHHHHHh--ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEECCHH
Confidence            3344444444443  34677999999999999999998876689999999999999999887641 12245888999876


Q ss_pred             CC-CCC--CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          154 FL-PLK--ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       154 ~l-~~~--~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .. +..  +++||+|+++...+   +...++.++.++|+||
T Consensus       116 ~~~~~~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pg  153 (233)
T 2gpy_A          116 QLGEKLELYPLFDVLFIDAAKG---QYRRFFDMYSPMVRPG  153 (233)
T ss_dssp             GSHHHHTTSCCEEEEEEEGGGS---CHHHHHHHHGGGEEEE
T ss_pred             HHHHhcccCCCccEEEECCCHH---HHHHHHHHHHHHcCCC
Confidence            53 322  57899999987754   7789999999999986

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.46  E-value=4.9e-13  Score=109.65  Aligned_cols=89  Identities=15%  Similarity=0.003  Sum_probs=75.5

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ...+|||||||+|.++..+++.+|..+++++|+ +.+++.+++        ..++.++.+|+.. +++.+  |+|++..+
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~-~~p~~--D~v~~~~v  270 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA--------FSGVEHLGGDMFD-GVPKG--DAIFIKWI  270 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--------CTTEEEEECCTTT-CCCCC--SEEEEESC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh--------cCCCEEEecCCCC-CCCCC--CEEEEech
Confidence            457999999999999999999888899999999 888876532        2458999999875 66644  99999999


Q ss_pred             ccCcCChH--HHHHHHHhccCCC
Q 029554          171 LHWTNDLP--GAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~~--~~l~~i~r~Lkpg  191 (191)
                      +|+++|..  .+|+++.++|+||
T Consensus       271 lh~~~~~~~~~~l~~~~~~L~pg  293 (368)
T 3reo_A          271 CHDWSDEHCLKLLKNCYAALPDH  293 (368)
T ss_dssp             GGGBCHHHHHHHHHHHHHHSCTT
T ss_pred             hhcCCHHHHHHHHHHHHHHcCCC
Confidence            99987654  7899999999997

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.46  E-value=7.3e-14  Score=108.56  Aligned_cols=100  Identities=12%  Similarity=0.041  Sum_probs=69.9

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC---CCC---CCCcce
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL---PLK---ESSLDL  164 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l---~~~---~~~fDl  164 (191)
                      ++.+|||+|||+|.++..++...+..+|+++|+|+.|++.|+++.... +...++.++++|+...   +++   +++||+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKVPQKTLLMDALKEESEIIYDF  143 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHc-CCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence            466999999999999988887654589999999999999999987651 1223489999996642   344   268999


Q ss_pred             EEeCCcccCcC-C--------------hHHHHHHHHhccCCC
Q 029554          165 AISCLGLHWTN-D--------------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       165 Vis~~~l~~~~-d--------------~~~~l~~i~r~Lkpg  191 (191)
                      |+++...++.. +              ...++.++.++||||
T Consensus       144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkpg  185 (254)
T 2h00_A          144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEG  185 (254)
T ss_dssp             EEECCCCC-------------------------CTTTTHHHH
T ss_pred             EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecC
Confidence            99996655443 1              123456777777774

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.46  E-value=2.3e-13  Score=102.85  Aligned_cols=96  Identities=11%  Similarity=0.072  Sum_probs=77.3

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCCCCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~~~~~fDlVis~  168 (191)
                      +..+|||+|||+|..+..++...+ ..+|+++|+|+.+++.+++++... +...++.++.+|... ++..++ ||+|++.
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~  133 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN-GLIDRVELQVGDPLGIAAGQRD-IDILFMD  133 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-SGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-CCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence            567999999999999999988755 589999999999999999887541 123458899998653 344446 9999987


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ..   ..+...++.++.++||||
T Consensus       134 ~~---~~~~~~~l~~~~~~Lkpg  153 (210)
T 3c3p_A          134 CD---VFNGADVLERMNRCLAKN  153 (210)
T ss_dssp             TT---TSCHHHHHHHHGGGEEEE
T ss_pred             CC---hhhhHHHHHHHHHhcCCC
Confidence            43   457889999999999986

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.46  E-value=1.4e-13  Score=105.66  Aligned_cols=96  Identities=10%  Similarity=0.021  Sum_probs=74.9

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC---CCCCCCCcceE
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF---LPLKESSLDLA  165 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~---l~~~~~~fDlV  165 (191)
                      .++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.+.+....  +  .++.++.+|+..   +++.+++||+|
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~--~--~~v~~~~~d~~~~~~~~~~~~~~D~V  151 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--R--TNIIPVIEDARHPHKYRMLIAMVDVI  151 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH--C--TTEEEECSCTTCGGGGGGGCCCEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc--c--CCeEEEEcccCChhhhcccCCcEEEE
Confidence            457799999999999999998863 557999999999988877766643  1  568899999876   44556789999


Q ss_pred             EeCCcccCcCChHHHHHHHHhccCCC
Q 029554          166 ISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       166 is~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++..  .......++.++.++||||
T Consensus       152 ~~~~~--~~~~~~~~~~~~~~~Lkpg  175 (233)
T 2ipx_A          152 FADVA--QPDQTRIVALNAHTFLRNG  175 (233)
T ss_dssp             EECCC--CTTHHHHHHHHHHHHEEEE
T ss_pred             EEcCC--CccHHHHHHHHHHHHcCCC
Confidence            99765  2222245688899999986

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.46  E-value=6.3e-13  Score=105.16  Aligned_cols=99  Identities=13%  Similarity=0.063  Sum_probs=76.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEEC-ChhHHHHHHHhhhhc---cCCC-----CceeeEecCCCCCC--C-
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDT-SYDMLKLCKDAQQDA---HNDN-----IETCFVVGDEEFLP--L-  157 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~-s~~~l~~a~~~~~~~---~~~~-----~~~~~~~~d~~~l~--~-  157 (191)
                      .++.+|||+|||+|.++..++..+ ..+|+++|+ |+.+++.++++....   .+..     .++.+...+.....  + 
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  156 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ  156 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence            356799999999999999888865 348999999 899999999887310   0111     24666655533211  1 


Q ss_pred             ---CCCCcceEEeCCcccCcCChHHHHHHHHhccC
Q 029554          158 ---KESSLDLAISCLGLHWTNDLPGAMIQVSIFLL  189 (191)
Q Consensus       158 ---~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lk  189 (191)
                         ++++||+|++..+++|.++...++..+.++|+
T Consensus       157 ~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk  191 (281)
T 3bzb_A          157 RCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLA  191 (281)
T ss_dssp             HHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBC
T ss_pred             hhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhc
Confidence               35789999999999999999999999999999

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.46  E-value=3.6e-13  Score=102.73  Aligned_cols=107  Identities=17%  Similarity=0.084  Sum_probs=81.0

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccC---CCCceeeEecCCCC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHN---DNIETCFVVGDEEF  154 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~---~~~~~~~~~~d~~~  154 (191)
                      ..+++.+.....++.+|||+|||+|..+..+++. ++..+|+++|+|+.+++.++++....+.   ...++.+..+|...
T Consensus        65 ~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  144 (226)
T 1i1n_A           65 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM  144 (226)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             HHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc
Confidence            3455554422446789999999999999999876 3456999999999999999987754110   02468889999776


Q ss_pred             CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          155 LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .+..+++||+|+++..++++.      .++.++||||
T Consensus       145 ~~~~~~~fD~i~~~~~~~~~~------~~~~~~Lkpg  175 (226)
T 1i1n_A          145 GYAEEAPYDAIHVGAAAPVVP------QALIDQLKPG  175 (226)
T ss_dssp             CCGGGCCEEEEEECSBBSSCC------HHHHHTEEEE
T ss_pred             CcccCCCcCEEEECCchHHHH------HHHHHhcCCC
Confidence            555567899999999887763      5788888885

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.46  E-value=1.8e-13  Score=105.78  Aligned_cols=91  Identities=16%  Similarity=-0.015  Sum_probs=73.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhc----CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC---CCC-CCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGR----GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL---PLK-ESSL  162 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~----~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l---~~~-~~~f  162 (191)
                      ++.+|||||||+|..+..|++.    ++..+|+++|+|+.|++.++.       ...++.++++|....   +.. +.+|
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-------~~~~v~~~~gD~~~~~~l~~~~~~~f  153 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-------DMENITLHQGDCSDLTTFEHLREMAH  153 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-------GCTTEEEEECCSSCSGGGGGGSSSCS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-------cCCceEEEECcchhHHHHHhhccCCC
Confidence            4579999999999999999876    566899999999999887752       124589999998763   533 3479


Q ss_pred             ceEEeCCcccCcCChHHHHHHHHh-ccCCC
Q 029554          163 DLAISCLGLHWTNDLPGAMIQVSI-FLLPD  191 (191)
Q Consensus       163 DlVis~~~l~~~~d~~~~l~~i~r-~Lkpg  191 (191)
                      |+|++..+  | .+...++.++.+ +||||
T Consensus       154 D~I~~d~~--~-~~~~~~l~~~~r~~LkpG  180 (236)
T 2bm8_A          154 PLIFIDNA--H-ANTFNIMKWAVDHLLEEG  180 (236)
T ss_dssp             SEEEEESS--C-SSHHHHHHHHHHHTCCTT
T ss_pred             CEEEECCc--h-HhHHHHHHHHHHhhCCCC
Confidence            99998766  3 378889999997 99997

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.45  E-value=1.1e-13  Score=105.96  Aligned_cols=110  Identities=12%  Similarity=0.031  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC------CceEEEEECChhHHHHHHHhhhhccC---CCCce
Q 029554           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG------IEKLIMMDTSYDMLKLCKDAQQDAHN---DNIET  145 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~------~~~v~~vD~s~~~l~~a~~~~~~~~~---~~~~~  145 (191)
                      ..+...+++.+.....++.+|||+|||+|.++..+++..+      ..+|+++|+++.+++.++++......   ...++
T Consensus        68 p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v  147 (227)
T 1r18_A           68 PHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL  147 (227)
T ss_dssp             HHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred             hHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCce
Confidence            3444556655542245678999999999999999887542      24899999999999999988754110   02358


Q ss_pred             eeEecCCCCCCCCC-CCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          146 CFVVGDEEFLPLKE-SSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       146 ~~~~~d~~~l~~~~-~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .+..+|... ++++ ++||+|+++.+++++.      .++.++||||
T Consensus       148 ~~~~~d~~~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~Lkpg  187 (227)
T 1r18_A          148 LIVEGDGRK-GYPPNAPYNAIHVGAAAPDTP------TELINQLASG  187 (227)
T ss_dssp             EEEESCGGG-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEE
T ss_pred             EEEECCccc-CCCcCCCccEEEECCchHHHH------HHHHHHhcCC
Confidence            889999765 3343 7899999999999874      6788888875

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.45  E-value=7.2e-13  Score=108.53  Aligned_cols=89  Identities=16%  Similarity=0.020  Sum_probs=75.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      +..+|||||||+|..+..+.+.+|..+++++|+ +.+++.+++        ..++.++.+|+.. |++.+  |+|++..+
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~-~~p~~--D~v~~~~v  268 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ--------FPGVTHVGGDMFK-EVPSG--DTILMKWI  268 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--------CTTEEEEECCTTT-CCCCC--SEEEEESC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh--------cCCeEEEeCCcCC-CCCCC--CEEEehHH
Confidence            457999999999999999999888889999999 888766532        2469999999876 66654  99999999


Q ss_pred             ccCcCCh--HHHHHHHHhccCCC
Q 029554          171 LHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      +|+++|.  ..+|++++++||||
T Consensus       269 lh~~~d~~~~~~L~~~~~~L~pg  291 (364)
T 3p9c_A          269 LHDWSDQHCATLLKNCYDALPAH  291 (364)
T ss_dssp             GGGSCHHHHHHHHHHHHHHSCTT
T ss_pred             hccCCHHHHHHHHHHHHHHcCCC
Confidence            9988654  57899999999997

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.45  E-value=6.4e-13  Score=101.12  Aligned_cols=98  Identities=11%  Similarity=-0.005  Sum_probs=77.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-C-CC---CCCcc
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-P-LK---ESSLD  163 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~-~~---~~~fD  163 (191)
                      .++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++... ....++.++++|.... + ++   .++||
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~~~fD  135 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERA-NLNDRVEVRTGLALDSLQQIENEKYEPFD  135 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence            3677999999999999999998865 589999999999999999887641 2233589999996532 2 11   26799


Q ss_pred             eEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          164 LAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       164 lVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +|++....   .+...++.++.++|+||
T Consensus       136 ~v~~d~~~---~~~~~~l~~~~~~L~pg  160 (223)
T 3duw_A          136 FIFIDADK---QNNPAYFEWALKLSRPG  160 (223)
T ss_dssp             EEEECSCG---GGHHHHHHHHHHTCCTT
T ss_pred             EEEEcCCc---HHHHHHHHHHHHhcCCC
Confidence            99987663   35678999999999997

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.44  E-value=3.2e-13  Score=104.05  Aligned_cols=120  Identities=14%  Similarity=0.065  Sum_probs=86.8

Q ss_pred             hhcCCCchHHHHHHHHHHHHHHh-cccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCC
Q 029554           65 WLTRPNDSFVDAVAENLLDRLED-CRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDN  142 (191)
Q Consensus        65 ~~y~~~~~~~~~~~~~l~~~l~~-~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~  142 (191)
                      ..|+.++..+...+..++..+.. ...++.+|||+|||+|..+..+++. ++..+|+++|+|+.|++...+....    .
T Consensus        49 ~~yr~w~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~----r  124 (232)
T 3id6_C           49 VEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR----R  124 (232)
T ss_dssp             EEEEECCTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH----C
T ss_pred             cchhhhchHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh----c
Confidence            34777777777888788776652 2357889999999999999999875 4567999999999997655444332    1


Q ss_pred             CceeeEecCCCCCC---CCCCCcceEEeCCcccCcCChHHHH-HHHHhccCCC
Q 029554          143 IETCFVVGDEEFLP---LKESSLDLAISCLGLHWTNDLPGAM-IQVSIFLLPD  191 (191)
Q Consensus       143 ~~~~~~~~d~~~l~---~~~~~fDlVis~~~l~~~~d~~~~l-~~i~r~Lkpg  191 (191)
                      .++.++++|.....   ...++||+|+++.+.   ++....+ ..+.++||||
T Consensus       125 ~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpG  174 (232)
T 3id6_C          125 PNIFPLLADARFPQSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVN  174 (232)
T ss_dssp             TTEEEEECCTTCGGGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEE
T ss_pred             CCeEEEEcccccchhhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCC
Confidence            35888999976432   124689999999765   4555555 4555699986

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.44  E-value=1.2e-12  Score=98.04  Aligned_cols=88  Identities=13%  Similarity=-0.056  Sum_probs=69.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.++++..       ++.++++|+..++   ++||+|+++.
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~-------~~~~~~~d~~~~~---~~~D~v~~~~  118 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNCG-------GVNFMVADVSEIS---GKYDTWIMNP  118 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHCT-------TSEEEECCGGGCC---CCEEEEEECC
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhcC-------CCEEEECcHHHCC---CCeeEEEECC
Confidence            366799999999999999998873 4579999999999999988763       4889999988765   6899999999


Q ss_pred             cccCcCC--hHHHHHHHHhcc
Q 029554          170 GLHWTND--LPGAMIQVSIFL  188 (191)
Q Consensus       170 ~l~~~~d--~~~~l~~i~r~L  188 (191)
                      .++|..+  ...++.++.+++
T Consensus       119 p~~~~~~~~~~~~l~~~~~~~  139 (200)
T 1ne2_A          119 PFGSVVKHSDRAFIDKAFETS  139 (200)
T ss_dssp             CC-------CHHHHHHHHHHE
T ss_pred             CchhccCchhHHHHHHHHHhc
Confidence            9998854  345777777665

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.43  E-value=2.4e-13  Score=106.11  Aligned_cols=93  Identities=18%  Similarity=0.122  Sum_probs=75.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.++++...  +... +.+..+|.... +++++||+|+++.
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g--~~v~gvDi~~~~v~~a~~n~~~--~~~~-v~~~~~d~~~~-~~~~~fD~Vv~n~  192 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKR--NGVR-PRFLEGSLEAA-LPFGPFDLLVANL  192 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHH--TTCC-CEEEESCHHHH-GGGCCEEEEEEEC
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHH--cCCc-EEEEECChhhc-CcCCCCCEEEECC
Confidence            467899999999999999998877  4999999999999999998765  2222 78888886542 3457899999987


Q ss_pred             cccCcCChHHHHHHHHhccCCC
Q 029554          170 GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ..++   ...++.++.++|+||
T Consensus       193 ~~~~---~~~~l~~~~~~Lkpg  211 (254)
T 2nxc_A          193 YAEL---HAALAPRYREALVPG  211 (254)
T ss_dssp             CHHH---HHHHHHHHHHHEEEE
T ss_pred             cHHH---HHHHHHHHHHHcCCC
Confidence            6654   478899999999985

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.43  E-value=3.3e-13  Score=106.66  Aligned_cols=95  Identities=9%  Similarity=-0.056  Sum_probs=77.5

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..++..+.. +|+++|+|+.+++.++++... .+...++.++++|+..++. +++||+|+++.
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~-n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~  200 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHL-NKVEDRMSAYNMDNRDFPG-ENIADRILMGY  200 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHH-TTCTTTEEEECSCTTTCCC-CSCEEEEEECC
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHH-cCCCceEEEEECCHHHhcc-cCCccEEEECC
Confidence            46789999999999999999988733 799999999999999988765 1222348899999888765 68899999864


Q ss_pred             cccCcCChHHHHHHHHhccCCC
Q 029554          170 GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .    .+...++.++.++|+||
T Consensus       201 p----~~~~~~l~~~~~~Lkpg  218 (278)
T 2frn_A          201 V----VRTHEFIPKALSIAKDG  218 (278)
T ss_dssp             C----SSGGGGHHHHHHHEEEE
T ss_pred             c----hhHHHHHHHHHHHCCCC
Confidence            4    34467888999999985

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.43  E-value=6.1e-13  Score=108.43  Aligned_cols=115  Identities=13%  Similarity=-0.017  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC
Q 029554           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD  151 (191)
Q Consensus        73 ~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d  151 (191)
                      +...++..++..+.  ..++.+|||+|||+|.++..++..+ +..+++|+|+|+.+++.|++++..  ....++.+.++|
T Consensus       187 l~~~la~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~--~g~~~i~~~~~D  262 (354)
T 3tma_A          187 LTPVLAQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALA--SGLSWIRFLRAD  262 (354)
T ss_dssp             CCHHHHHHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHH--TTCTTCEEEECC
T ss_pred             cCHHHHHHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHH--cCCCceEEEeCC
Confidence            34455555555544  3467799999999999999998865 668999999999999999998865  222378999999


Q ss_pred             CCCCCCCCCCcceEEeCCcccCcC--------ChHHHHHHHHhccCCC
Q 029554          152 EEFLPLKESSLDLAISCLGLHWTN--------DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       152 ~~~l~~~~~~fDlVis~~~l~~~~--------d~~~~l~~i~r~Lkpg  191 (191)
                      +..++.+.+.||+|++|....+..        ....++.++.++|+||
T Consensus       263 ~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkpg  310 (354)
T 3tma_A          263 ARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPG  310 (354)
T ss_dssp             GGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTT
T ss_pred             hhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCC
Confidence            998877777899999986544321        1267889999999986

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.42  E-value=6.6e-13  Score=112.44  Aligned_cols=98  Identities=15%  Similarity=0.105  Sum_probs=79.0

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..+++. +..+|+++|+|+ +++.|+++... .+...++.++.+|++.++++ ++||+|+|+.
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~-~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~  232 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKS-NNLTDRIVVIPGKVEEVSLP-EQVDIIISEP  232 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHH-TTCTTTEEEEESCTTTCCCS-SCEEEEECCC
T ss_pred             cCCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHH-cCCCCcEEEEECchhhCccC-CCeEEEEEeC
Confidence            35679999999999999988875 356999999998 99999887764 12235799999999887765 5899999998


Q ss_pred             cccCcC--ChHHHHHHHHhccCCC
Q 029554          170 GLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      .++++.  +....+.++.++||||
T Consensus       233 ~~~~~~~e~~~~~l~~~~~~Lkpg  256 (480)
T 3b3j_A          233 MGYMLFNERMLESYLHAKKYLKPS  256 (480)
T ss_dssp             CHHHHTCHHHHHHHHHGGGGEEEE
T ss_pred             chHhcCcHHHHHHHHHHHHhcCCC
Confidence            877664  3456788889999986

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.42  E-value=2.8e-13  Score=101.43  Aligned_cols=89  Identities=15%  Similarity=0.097  Sum_probs=70.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCC--CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----------
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGG--IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----------  156 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----------  156 (191)
                      .++.+|||+|||+|.++..+++..+  ..+|+++|+|+..             ...++.++++|+...+           
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-------------~~~~v~~~~~d~~~~~~~~~~~~~~i~   87 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-------------PIPNVYFIQGEIGKDNMNNIKNINYID   87 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-------------CCTTCEEEECCTTTTSSCCC-------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-------------CCCCceEEEccccchhhhhhccccccc
Confidence            4667999999999999999998765  5899999999831             1234788889987765           


Q ss_pred             --------------CCCCCcceEEeCCcccCcC----ChH-------HHHHHHHhccCCC
Q 029554          157 --------------LKESSLDLAISCLGLHWTN----DLP-------GAMIQVSIFLLPD  191 (191)
Q Consensus       157 --------------~~~~~fDlVis~~~l~~~~----d~~-------~~l~~i~r~Lkpg  191 (191)
                                    +++++||+|+++.++++..    |..       .++.++.++||||
T Consensus        88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg  147 (201)
T 2plw_A           88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIG  147 (201)
T ss_dssp             ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCC
Confidence                          5667999999999888752    222       3788899999986

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.42  E-value=9.8e-13  Score=106.43  Aligned_cols=108  Identities=14%  Similarity=0.050  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhcc-----C----CCCcee
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAH-----N----DNIETC  146 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~-----~----~~~~~~  146 (191)
                      ....++..+.  ..++.+|||+|||+|.++..++.. ++..+|+++|+++.+++.++++...+.     +    ...++.
T Consensus        93 ~~~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~  170 (336)
T 2b25_A           93 DINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD  170 (336)
T ss_dssp             HHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred             HHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceE
Confidence            3445555554  457789999999999999999886 566899999999999999998875321     1    124689


Q ss_pred             eEecCCCCC--CCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          147 FVVGDEEFL--PLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       147 ~~~~d~~~l--~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +..+|+...  ++++++||+|+++..     ++...+.++.++|+||
T Consensus       171 ~~~~d~~~~~~~~~~~~fD~V~~~~~-----~~~~~l~~~~~~Lkpg  212 (336)
T 2b25_A          171 FIHKDISGATEDIKSLTFDAVALDML-----NPHVTLPVFYPHLKHG  212 (336)
T ss_dssp             EEESCTTCCC-------EEEEEECSS-----STTTTHHHHGGGEEEE
T ss_pred             EEECChHHcccccCCCCeeEEEECCC-----CHHHHHHHHHHhcCCC
Confidence            999998765  456678999998653     3445889999999986

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.42  E-value=8.6e-13  Score=108.31  Aligned_cols=97  Identities=14%  Similarity=0.151  Sum_probs=79.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC--
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC--  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~--  168 (191)
                      ++.+|||||||+|.++...++.| ..+|+++|.|+ |++.|++.... ++...++.++.++++.+.++ .+||+|||.  
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~-~~~~a~~~~~~-n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~  158 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASA-IWQQAREVVRF-NGLEDRVHVLPGPVETVELP-EQVDAIVSEWM  158 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-THHHHHHHHHH-TTCTTTEEEEESCTTTCCCS-SCEEEEECCCC
T ss_pred             CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChH-HHHHHHHHHHH-cCCCceEEEEeeeeeeecCC-ccccEEEeecc
Confidence            67899999999999998887765 46899999996 88888877655 23456799999999988876 679999994  


Q ss_pred             -CcccCcCChHHHHHHHHhccCCC
Q 029554          169 -LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 -~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                       ..|.+-..+..++....+.||||
T Consensus       159 ~~~l~~e~~l~~~l~a~~r~Lkp~  182 (376)
T 4hc4_A          159 GYGLLHESMLSSVLHARTKWLKEG  182 (376)
T ss_dssp             BTTBTTTCSHHHHHHHHHHHEEEE
T ss_pred             cccccccchhhhHHHHHHhhCCCC
Confidence             45666667889999999999986

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.42  E-value=2.3e-12  Score=105.88  Aligned_cols=97  Identities=13%  Similarity=0.021  Sum_probs=80.3

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCC-CCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPL-KESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~-~~~~fDlVis~  168 (191)
                      ++.+|||+| |+|.++..++..++..+|+++|+|+.|++.++++....  ...++.++++|+.. +|. .+++||+|+++
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~--g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~  248 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEI--GYEDIEIFTFDLRKPLPDYALHKFDTFITD  248 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHH--TCCCEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCEEEEEChhhhhchhhccCCccEEEEC
Confidence            567999999 99999999988776679999999999999999988652  22269999999887 663 35689999999


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ..+++.. ...++.++.++||||
T Consensus       249 ~p~~~~~-~~~~l~~~~~~Lkpg  270 (373)
T 2qm3_A          249 PPETLEA-IRAFVGRGIATLKGP  270 (373)
T ss_dssp             CCSSHHH-HHHHHHHHHHTBCST
T ss_pred             CCCchHH-HHHHHHHHHHHcccC
Confidence            7665443 578899999999995

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.41  E-value=2.6e-13  Score=103.36  Aligned_cols=98  Identities=12%  Similarity=-0.068  Sum_probs=77.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC-CC----CCCc
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP-LK----ESSL  162 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~-~~----~~~f  162 (191)
                      .++.+|||+|||+|..+..++...+ ..+|+++|+|+.+++.+++++... +...++.++++|... ++ +.    .++|
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKA-GLSDKIGLRLSPAKDTLAELIHAGQAWQY  141 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC-CCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence            3567999999999999999998754 689999999999999999987651 223458999998643 22 11    1789


Q ss_pred             ceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          163 DLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       163 DlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |+|++...   ..+...++.++.++||||
T Consensus       142 D~v~~~~~---~~~~~~~l~~~~~~L~pg  167 (225)
T 3tr6_A          142 DLIYIDAD---KANTDLYYEESLKLLREG  167 (225)
T ss_dssp             EEEEECSC---GGGHHHHHHHHHHHEEEE
T ss_pred             cEEEECCC---HHHHHHHHHHHHHhcCCC
Confidence            99997654   446788999999999986

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.41  E-value=9.5e-13  Score=102.33  Aligned_cols=97  Identities=11%  Similarity=-0.009  Sum_probs=78.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC-C-----CCCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP-L-----KESSL  162 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~-~-----~~~~f  162 (191)
                      ++.+|||+|||+|..+..++...+ ..+|+++|+|+.+++.+++++... +...++.++.+|... ++ +     ++++|
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA-GVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT-TCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            567999999999999999988754 589999999999999999987651 223468999998653 33 1     15789


Q ss_pred             ceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          163 DLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       163 DlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |+|++...   ..+...++.++.++||||
T Consensus       158 D~V~~d~~---~~~~~~~l~~~~~~LkpG  183 (247)
T 1sui_A          158 DFIFVDAD---KDNYLNYHKRLIDLVKVG  183 (247)
T ss_dssp             SEEEECSC---STTHHHHHHHHHHHBCTT
T ss_pred             EEEEEcCc---hHHHHHHHHHHHHhCCCC
Confidence            99998754   346788999999999997

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.41  E-value=1.2e-12  Score=104.92  Aligned_cols=97  Identities=12%  Similarity=0.058  Sum_probs=77.5

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC--CCCCCCcceEEeCCc
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL--PLKESSLDLAISCLG  170 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l--~~~~~~fDlVis~~~  170 (191)
                      .+|||||||+|.++..+.+..|..+++++|+++.+++.|++.+..  ....+++++.+|....  .+++++||+|++...
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~--~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~  168 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI--PRAPRVKIRVDDARMVAESFTPASRDVIIRDVF  168 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC--CCTTTEEEEESCHHHHHHTCCTTCEEEEEECCS
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc--cCCCceEEEECcHHHHHhhccCCCCCEEEECCC
Confidence            489999999999999999876678999999999999999998753  2345789999996542  345678999999765


Q ss_pred             ccCcC----ChHHHHHHHHhccCCC
Q 029554          171 LHWTN----DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~----d~~~~l~~i~r~Lkpg  191 (191)
                      .++..    ....+++++.++|+||
T Consensus       169 ~~~~~~~~L~t~efl~~~~r~Lkpg  193 (317)
T 3gjy_A          169 AGAITPQNFTTVEFFEHCHRGLAPG  193 (317)
T ss_dssp             TTSCCCGGGSBHHHHHHHHHHEEEE
T ss_pred             CccccchhhhHHHHHHHHHHhcCCC
Confidence            44321    1268999999999985

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.40  E-value=5.9e-13  Score=108.63  Aligned_cols=88  Identities=19%  Similarity=0.098  Sum_probs=75.5

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ...+|||||||+|..+..+.+.+|..+++++|+ +.+++.+++        ..++.++.+|+.. +++  +||+|+++.+
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~-~~~--~~D~v~~~~v  260 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG--------NENLNFVGGDMFK-SIP--SADAVLLKWV  260 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC--------CSSEEEEECCTTT-CCC--CCSEEEEESC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc--------CCCcEEEeCccCC-CCC--CceEEEEccc
Confidence            557999999999999999999888889999999 788766532        2348999999876 655  4999999999


Q ss_pred             ccCcCChH--HHHHHHHhccCC
Q 029554          171 LHWTNDLP--GAMIQVSIFLLP  190 (191)
Q Consensus       171 l~~~~d~~--~~l~~i~r~Lkp  190 (191)
                      +||++|..  .+++++.++|+|
T Consensus       261 lh~~~d~~~~~~l~~~~~~L~p  282 (358)
T 1zg3_A          261 LHDWNDEQSLKILKNSKEAISH  282 (358)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTGG
T ss_pred             ccCCCHHHHHHHHHHHHHhCCC
Confidence            99999877  999999999998

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.40  E-value=2.4e-13  Score=108.82  Aligned_cols=101  Identities=18%  Similarity=0.132  Sum_probs=76.9

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhc--cCCCCceeeEecCCCCCCC--CCCCcceEE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEFLPL--KESSLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~~~~~d~~~l~~--~~~~fDlVi  166 (191)
                      .+.+|||||||+|.++..+.+..+..+|+++|+|+.+++.+++.+..+  .....++.++.+|....+.  ++++||+|+
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi  174 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI  174 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence            567999999999999999998766689999999999999999876321  1123568899999765432  467899999


Q ss_pred             eCCcccCcCCh----HHHHHHHHhccCCC
Q 029554          167 SCLGLHWTNDL----PGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~~~d~----~~~l~~i~r~Lkpg  191 (191)
                      ++...++.++.    ..+++++.++||||
T Consensus       175 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg  203 (304)
T 3bwc_A          175 IDTTDPAGPASKLFGEAFYKDVLRILKPD  203 (304)
T ss_dssp             EECC---------CCHHHHHHHHHHEEEE
T ss_pred             ECCCCccccchhhhHHHHHHHHHHhcCCC
Confidence            98776654332    68899999999986

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.40  E-value=1.1e-12  Score=103.39  Aligned_cols=104  Identities=14%  Similarity=-0.012  Sum_probs=82.4

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~  157 (191)
                      ..++..+.  ..++.+|||+|||+|.++..++.. ++..+|+++|+|+.+++.++++.... ....++.+..+|+... +
T Consensus       102 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~-~  177 (277)
T 1o54_A          102 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW-GLIERVTIKVRDISEG-F  177 (277)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT-TCGGGEEEECCCGGGC-C
T ss_pred             HHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc-CCCCCEEEEECCHHHc-c
Confidence            34554444  456789999999999999999887 56689999999999999999887641 1124688899997765 5


Q ss_pred             CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          158 KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++++||+|+++     .+++..++.++.++|+||
T Consensus       178 ~~~~~D~V~~~-----~~~~~~~l~~~~~~L~pg  206 (277)
T 1o54_A          178 DEKDVDALFLD-----VPDPWNYIDKCWEALKGG  206 (277)
T ss_dssp             SCCSEEEEEEC-----CSCGGGTHHHHHHHEEEE
T ss_pred             cCCccCEEEEC-----CcCHHHHHHHHHHHcCCC
Confidence            66789999984     457778999999999985

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.40  E-value=1.9e-12  Score=98.77  Aligned_cols=95  Identities=13%  Similarity=0.074  Sum_probs=74.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC---CCCCCCcceE
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL---PLKESSLDLA  165 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l---~~~~~~fDlV  165 (191)
                      .++.+|||+|||+|.++..+++. ++..+|+++|+|+.+++.++++...    ..++.++++|+...   ...+++||+|
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~D~v  147 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE----RRNIVPILGDATKPEEYRALVPKVDVI  147 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS----CTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc----cCCCEEEEccCCCcchhhcccCCceEE
Confidence            36679999999999999999876 4457999999999999999887753    25689999998752   1123589999


Q ss_pred             EeCCcccCcCChH-HHHHHHHhccCCC
Q 029554          166 ISCLGLHWTNDLP-GAMIQVSIFLLPD  191 (191)
Q Consensus       166 is~~~l~~~~d~~-~~l~~i~r~Lkpg  191 (191)
                      +++..   .++.. .++.++.++||||
T Consensus       148 ~~~~~---~~~~~~~~l~~~~~~Lkpg  171 (227)
T 1g8a_A          148 FEDVA---QPTQAKILIDNAEVYLKRG  171 (227)
T ss_dssp             EECCC---STTHHHHHHHHHHHHEEEE
T ss_pred             EECCC---CHhHHHHHHHHHHHhcCCC
Confidence            98765   23444 4499999999986

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.40  E-value=1.2e-12  Score=104.64  Aligned_cols=93  Identities=13%  Similarity=0.090  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~  153 (191)
                      ...+...+++.+.  ..++.+|||+|||+|.++..|++.+  .+|+++|+|+.+++.++++...  ....++.++.+|+.
T Consensus        27 ~~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~~--~~v~~vDi~~~~~~~a~~~~~~--~~~~~v~~~~~D~~  100 (299)
T 2h1r_A           27 NPGILDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPLA--KKVITIDIDSRMISEVKKRCLY--EGYNNLEVYEGDAI  100 (299)
T ss_dssp             CHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTTS--SEEEEECSCHHHHHHHHHHHHH--TTCCCEEC----CC
T ss_pred             CHHHHHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHH--cCCCceEEEECchh
Confidence            4456666776655  3467899999999999999999876  7999999999999999988753  23356899999988


Q ss_pred             CCCCCCCCcceEEeCCcccCc
Q 029554          154 FLPLKESSLDLAISCLGLHWT  174 (191)
Q Consensus       154 ~l~~~~~~fDlVis~~~l~~~  174 (191)
                      .++++  +||+|+++...++.
T Consensus       101 ~~~~~--~~D~Vv~n~py~~~  119 (299)
T 2h1r_A          101 KTVFP--KFDVCTANIPYKIS  119 (299)
T ss_dssp             SSCCC--CCSEEEEECCGGGH
T ss_pred             hCCcc--cCCEEEEcCCcccc
Confidence            87653  79999999877755

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.40  E-value=7.6e-13  Score=105.39  Aligned_cols=101  Identities=8%  Similarity=0.038  Sum_probs=79.2

Q ss_pred             hcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCce
Q 029554           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET  145 (191)
Q Consensus        66 ~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~  145 (191)
                      .|.++-.....+..++++.+.  ..++.+|||||||+|.++..|++.+  .+|+++|+++.|++.++++...    ..++
T Consensus        27 ~~GQnfL~d~~i~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~~--~~V~aVEid~~li~~a~~~~~~----~~~v   98 (295)
T 3gru_A           27 KLGQCFLIDKNFVNKAVESAN--LTKDDVVLEIGLGKGILTEELAKNA--KKVYVIEIDKSLEPYANKLKEL----YNNI   98 (295)
T ss_dssp             ---CCEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCGGGHHHHHHHHHH----CSSE
T ss_pred             ccCccccCCHHHHHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhcc----CCCe
Confidence            344433334556677776665  4467899999999999999999886  8999999999999999988742    3468


Q ss_pred             eeEecCCCCCCCCCCCcceEEeCCcccCc
Q 029554          146 CFVVGDEEFLPLKESSLDLAISCLGLHWT  174 (191)
Q Consensus       146 ~~~~~d~~~l~~~~~~fDlVis~~~l~~~  174 (191)
                      .++++|+..+++++.+||.|++|...+..
T Consensus        99 ~vi~gD~l~~~~~~~~fD~Iv~NlPy~is  127 (295)
T 3gru_A           99 EIIWGDALKVDLNKLDFNKVVANLPYQIS  127 (295)
T ss_dssp             EEEESCTTTSCGGGSCCSEEEEECCGGGH
T ss_pred             EEEECchhhCCcccCCccEEEEeCccccc
Confidence            99999999888887789999999776543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.40  E-value=3.9e-12  Score=98.02  Aligned_cols=103  Identities=13%  Similarity=0.028  Sum_probs=81.3

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK  158 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~  158 (191)
                      ..++..+.  ..++.+|||+|||+|.++..+++.+  .+++++|+|+.+++.++++.... ....++.+...|+....++
T Consensus        81 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~  155 (248)
T 2yvl_A           81 FYIALKLN--LNKEKRVLEFGTGSGALLAVLSEVA--GEVWTFEAVEEFYKTAQKNLKKF-NLGKNVKFFNVDFKDAEVP  155 (248)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHHHHT-TCCTTEEEECSCTTTSCCC
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCccHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHHc-CCCCcEEEEEcChhhcccC
Confidence            34554443  3467899999999999999998874  89999999999999999887541 1225688898998765435


Q ss_pred             CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++||+|+++     .+++..++.++.++|+||
T Consensus       156 ~~~~D~v~~~-----~~~~~~~l~~~~~~L~~g  183 (248)
T 2yvl_A          156 EGIFHAAFVD-----VREPWHYLEKVHKSLMEG  183 (248)
T ss_dssp             TTCBSEEEEC-----SSCGGGGHHHHHHHBCTT
T ss_pred             CCcccEEEEC-----CcCHHHHHHHHHHHcCCC
Confidence            6789999984     447788999999999996

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.40  E-value=2.7e-12  Score=104.67  Aligned_cols=96  Identities=22%  Similarity=0.110  Sum_probs=81.5

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ...+|||||||+|..+..+++.+|..+++..|. +.+++.+++....  ....++.++.+|+...|++  .+|+|++..+
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~--~~~~rv~~~~gD~~~~~~~--~~D~~~~~~v  253 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSF--QEEEQIDFQEGDFFKDPLP--EADLYILARV  253 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC----CCSEEEEESCTTTSCCC--CCSEEEEESS
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhh--cccCceeeecCccccCCCC--CceEEEeeee
Confidence            456899999999999999999999999999997 8899999887653  3456799999998766544  4799999999


Q ss_pred             ccCcCCh--HHHHHHHHhccCCC
Q 029554          171 LHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      ||+++|.  ..+|++++++|+||
T Consensus       254 lh~~~d~~~~~iL~~~~~al~pg  276 (353)
T 4a6d_A          254 LHDWADGKCSHLLERIYHTCKPG  276 (353)
T ss_dssp             GGGSCHHHHHHHHHHHHHHCCTT
T ss_pred             cccCCHHHHHHHHHHHHhhCCCC
Confidence            9999876  46799999999997

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.40  E-value=6.2e-13  Score=105.54  Aligned_cols=91  Identities=10%  Similarity=0.036  Sum_probs=66.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCcee-eEecCCCCCC---CCCCCcceE
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC-FVVGDEEFLP---LKESSLDLA  165 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~-~~~~d~~~l~---~~~~~fDlV  165 (191)
                      .++.+|||+|||||.++..+++.+ ..+|+++|+|+.|++.+.++...       +. +...++..++   ++..+||+|
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~g-a~~V~aVDvs~~mL~~a~r~~~r-------v~~~~~~ni~~l~~~~l~~~~fD~v  155 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNG-AKLVYAVDVGTNQLVWKLRQDDR-------VRSMEQYNFRYAEPVDFTEGLPSFA  155 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSSSCSCHHHHTCTT-------EEEECSCCGGGCCGGGCTTCCCSEE
T ss_pred             ccccEEEecCCCccHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcc-------cceecccCceecchhhCCCCCCCEE
Confidence            356799999999999999888874 46899999999999885443211       11 1122332222   234569999


Q ss_pred             EeCCcccCcCChHHHHHHHHhccCCC
Q 029554          166 ISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       166 is~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++..++++   +..+|.++.++|+||
T Consensus       156 ~~d~sf~s---l~~vL~e~~rvLkpG  178 (291)
T 3hp7_A          156 SIDVSFIS---LNLILPALAKILVDG  178 (291)
T ss_dssp             EECCSSSC---GGGTHHHHHHHSCTT
T ss_pred             EEEeeHhh---HHHHHHHHHHHcCcC
Confidence            99988874   488999999999997

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.40  E-value=1.2e-13  Score=109.07  Aligned_cols=96  Identities=8%  Similarity=-0.050  Sum_probs=69.1

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeE--ecCCCCCCCCCCCcceEE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFV--VGDEEFLPLKESSLDLAI  166 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~--~~d~~~l~~~~~~fDlVi  166 (191)
                      ..++.+|||+|||+|.++..+++.   .+|+|+|+|+ |+..++++.........++.++  ++|+..++  +++||+|+
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vv  153 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVL  153 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEE
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEE
Confidence            346779999999999999999886   5899999999 6433322110000011267888  88988875  67899999


Q ss_pred             eCCcccCcCCh----H---HHHHHHHhccCCC
Q 029554          167 SCLGLHWTNDL----P---GAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~~~d~----~---~~l~~i~r~Lkpg  191 (191)
                      |+.+ ++..+.    .   .++.++.++||||
T Consensus       154 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpG  184 (276)
T 2wa2_A          154 CDIG-ESNPTAAVEASRTLTVLNVISRWLEYN  184 (276)
T ss_dssp             ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ECCC-cCCCchhhhHHHHHHHHHHHHHHhccC
Confidence            9988 554332    1   3788999999986

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.39  E-value=1.6e-13  Score=107.81  Aligned_cols=96  Identities=8%  Similarity=-0.003  Sum_probs=68.8

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeE--ecCCCCCCCCCCCcceEE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFV--VGDEEFLPLKESSLDLAI  166 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~--~~d~~~l~~~~~~fDlVi  166 (191)
                      ..++.+|||||||+|.++..+++.   .+|+|+|+++ |+..++++.........++.++  ++|+..++  +++||+|+
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~  145 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIM  145 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEE
Confidence            346779999999999999999886   6899999999 5433221110000011257888  88988875  67899999


Q ss_pred             eCCcccCcCCh----H---HHHHHHHhccCCC
Q 029554          167 SCLGLHWTNDL----P---GAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~~~d~----~---~~l~~i~r~Lkpg  191 (191)
                      |+.+ ++..+.    .   .++.++.++||||
T Consensus       146 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpG  176 (265)
T 2oxt_A          146 CDVG-ESSPKWSVESERTIKILELLEKWKVKN  176 (265)
T ss_dssp             ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EeCc-ccCCccchhHHHHHHHHHHHHHHhccC
Confidence            9887 554432    1   3788999999986

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.39  E-value=1.9e-12  Score=102.59  Aligned_cols=109  Identities=10%  Similarity=0.031  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~  156 (191)
                      +.+.+++.+.  ..++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.++++.... +...++.++++|+... 
T Consensus       111 lv~~~l~~~~--~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~-~l~~~v~~~~~D~~~~-  185 (284)
T 1nv8_A          111 LVELALELIR--KYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERH-GVSDRFFVRKGEFLEP-  185 (284)
T ss_dssp             HHHHHHHHHH--HHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHT-TCTTSEEEEESSTTGG-
T ss_pred             HHHHHHHHhc--ccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHc-CCCCceEEEECcchhh-
Confidence            3344444443  235678999999999999999888 6799999999999999999987651 1223489999997752 


Q ss_pred             CCCCCc---ceEEeCCccc-----------Cc--------CChHHHHHHHH-hccCCC
Q 029554          157 LKESSL---DLAISCLGLH-----------WT--------NDLPGAMIQVS-IFLLPD  191 (191)
Q Consensus       157 ~~~~~f---DlVis~~~l~-----------~~--------~d~~~~l~~i~-r~Lkpg  191 (191)
                      ++ ++|   |+|++|--..           |-        .|...+++++. +.|+||
T Consensus       186 ~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pg  242 (284)
T 1nv8_A          186 FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSG  242 (284)
T ss_dssp             GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTT
T ss_pred             cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCC
Confidence            22 578   9999982111           22        12237899999 999986

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.39  E-value=7.2e-13  Score=104.41  Aligned_cols=96  Identities=8%  Similarity=-0.052  Sum_probs=79.9

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..++.+|||+|||+|.++..++..++..+|+++|+|+.+++.++++...  +...++.++++|+...+. .++||+|+++
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~--n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d  193 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKL--NKLNNVIPILADNRDVEL-KDVADRVIMG  193 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHH--TTCSSEEEEESCGGGCCC-TTCEEEEEEC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--cCCCCEEEEECChHHcCc-cCCceEEEEC
Confidence            3467799999999999999999886557999999999999999998865  444568899999877643 5789999998


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ...    +...++.++.++|+||
T Consensus       194 ~p~----~~~~~l~~~~~~Lkpg  212 (272)
T 3a27_A          194 YVH----KTHKFLDKTFEFLKDR  212 (272)
T ss_dssp             CCS----SGGGGHHHHHHHEEEE
T ss_pred             Ccc----cHHHHHHHHHHHcCCC
Confidence            764    5677888999999885

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.38  E-value=5.1e-13  Score=107.38  Aligned_cols=101  Identities=21%  Similarity=0.196  Sum_probs=80.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCC---CCceeeEecCCCC-CCCCCCCcceEE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND---NIETCFVVGDEEF-LPLKESSLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~---~~~~~~~~~d~~~-l~~~~~~fDlVi  166 (191)
                      .+.+|||||||+|.++..+++..+..+++++|+++.+++.|++.+..+...   ..++.++.+|... ++..+++||+|+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            457999999999999999998766789999999999999999887532111   3568999999654 343467899999


Q ss_pred             eCCcccC---cC--C--hHHHHHHHHhccCCC
Q 029554          167 SCLGLHW---TN--D--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~---~~--d--~~~~l~~i~r~Lkpg  191 (191)
                      ++...++   .+  .  ...+++++.++|+||
T Consensus       157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkpg  188 (314)
T 1uir_A          157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG  188 (314)
T ss_dssp             EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE
T ss_pred             ECCCCcccccCcchhccHHHHHHHHHHhcCCC
Confidence            9877665   11  1  368899999999986

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.38  E-value=8e-14  Score=102.50  Aligned_cols=81  Identities=16%  Similarity=0.060  Sum_probs=70.5

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC---CCCCcceE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL---KESSLDLA  165 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~---~~~~fDlV  165 (191)
                      ..++.+|||+|||.                +++|+|+.|++.++++...      ++.+.++|++.+++   ++++||+|
T Consensus        10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~------~~~~~~~d~~~~~~~~~~~~~fD~V   67 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGN------EGRVSVENIKQLLQSAHKESSFDII   67 (176)
T ss_dssp             CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTT------TSEEEEEEGGGGGGGCCCSSCEEEE
T ss_pred             CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhccc------CcEEEEechhcCccccCCCCCEeEE
Confidence            34778999999986                2399999999999987632      37889999988876   78899999


Q ss_pred             EeCCcccCc-CChHHHHHHHHhccCCC
Q 029554          166 ISCLGLHWT-NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       166 is~~~l~~~-~d~~~~l~~i~r~Lkpg  191 (191)
                      +++.++||+ +|+..+++++.++||||
T Consensus        68 ~~~~~l~~~~~~~~~~l~~~~r~Lkpg   94 (176)
T 2ld4_A           68 LSGLVPGSTTLHSAEILAEIARILRPG   94 (176)
T ss_dssp             EECCSTTCCCCCCHHHHHHHHHHEEEE
T ss_pred             EECChhhhcccCHHHHHHHHHHHCCCC
Confidence            999999999 99999999999999996

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.38  E-value=1.5e-12  Score=105.55  Aligned_cols=101  Identities=20%  Similarity=0.184  Sum_probs=78.2

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhc--cCCCCceeeEecCCCCC--CCCCCCcceEE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEFL--PLKESSLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~~~~~d~~~l--~~~~~~fDlVi  166 (191)
                      .+.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++...  +-...++.++++|....  ..++++||+|+
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi  199 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  199 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence            457999999999999999998766789999999999999999887531  01134689999996542  23457899999


Q ss_pred             eCCcccC--cCC--hHHHHHHHHhccCCC
Q 029554          167 SCLGLHW--TND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~--~~d--~~~~l~~i~r~Lkpg  191 (191)
                      ++....+  ..+  ...+++++.++|+||
T Consensus       200 ~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg  228 (334)
T 1xj5_A          200 VDSSDPIGPAKELFEKPFFQSVARALRPG  228 (334)
T ss_dssp             ECCCCTTSGGGGGGSHHHHHHHHHHEEEE
T ss_pred             ECCCCccCcchhhhHHHHHHHHHHhcCCC
Confidence            9765322  122  368999999999986

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.37  E-value=1.8e-13  Score=106.16  Aligned_cols=98  Identities=11%  Similarity=-0.028  Sum_probs=78.0

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-CCC-----CCCc
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-PLK-----ESSL  162 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~~~-----~~~f  162 (191)
                      .++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++... +...++.++++|.... +..     +++|
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-g~~~~i~~~~gda~~~l~~~~~~~~~~~f  137 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREA-KQEHKIKLRLGPALDTLHSLLNEGGEHQF  137 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHT-TCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence            3567999999999999999988654 589999999999999999887651 2234799999997543 211     4789


Q ss_pred             ceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          163 DLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       163 DlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |+|++...   ..+...++.++.++|+||
T Consensus       138 D~V~~d~~---~~~~~~~l~~~~~~LkpG  163 (242)
T 3r3h_A          138 DFIFIDAD---KTNYLNYYELALKLVTPK  163 (242)
T ss_dssp             EEEEEESC---GGGHHHHHHHHHHHEEEE
T ss_pred             eEEEEcCC---hHHhHHHHHHHHHhcCCC
Confidence            99998765   346678899999999986

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.36  E-value=1.4e-12  Score=107.22  Aligned_cols=114  Identities=18%  Similarity=0.059  Sum_probs=85.7

Q ss_pred             chHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEec
Q 029554           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG  150 (191)
Q Consensus        71 ~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~  150 (191)
                      ..+...++..++...   ..++.+|||+|||+|.++..++..++..+++|+|+|+.|++.|+++.... +...++.+.++
T Consensus       200 a~l~~~la~~l~~~~---~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~-gl~~~i~~~~~  275 (373)
T 3tm4_A          200 AHLKASIANAMIELA---ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAA-GVLDKIKFIQG  275 (373)
T ss_dssp             TCCCHHHHHHHHHHH---TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHT-TCGGGCEEEEC
T ss_pred             CCccHHHHHHHHHhh---cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc-CCCCceEEEEC
Confidence            334556666666555   33677899999999999999998875459999999999999999988651 12247899999


Q ss_pred             CCCCCCCCCCCcceEEeCCcccCc-------CCh-HHHHHHHHhcc
Q 029554          151 DEEFLPLKESSLDLAISCLGLHWT-------NDL-PGAMIQVSIFL  188 (191)
Q Consensus       151 d~~~l~~~~~~fDlVis~~~l~~~-------~d~-~~~l~~i~r~L  188 (191)
                      |+..+++++++||+|++|......       .++ ..++.++.++|
T Consensus       276 D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l  321 (373)
T 3tm4_A          276 DATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL  321 (373)
T ss_dssp             CGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred             ChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence            999888777899999998654321       122 45677777766

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.36  E-value=2e-12  Score=100.01  Aligned_cols=99  Identities=6%  Similarity=-0.127  Sum_probs=73.4

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..++.+|||+|||+|.++..++..++..+|+++|+++.+++.|++++.. .+...++.+..+|......++.+||+|++.
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~-~gl~~~I~v~~gD~l~~~~~~~~~D~Ivia   97 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRS-SGLTEQIDVRKGNGLAVIEKKDAIDTIVIA   97 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCCCceEEEEecchhhccCccccccEEEEe
Confidence            3467899999999999999999988778999999999999999998865 122346899999966544333469998864


Q ss_pred             CcccCcCChHHHHHHHHhccCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                      ..--.  -...++.+..+.|++
T Consensus        98 gmGg~--lI~~IL~~~~~~L~~  117 (244)
T 3gnl_A           98 GMGGT--LIRTILEEGAAKLAG  117 (244)
T ss_dssp             EECHH--HHHHHHHHTGGGGTT
T ss_pred             CCchH--HHHHHHHHHHHHhCC
Confidence            33221  134556666666655

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.36  E-value=2.2e-12  Score=100.27  Aligned_cols=97  Identities=13%  Similarity=-0.010  Sum_probs=80.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .+..+|||||||+|.++..+....|..+|+++|+++.|++.+++++..   ......+.+.|...-+ +.+.||+|+++.
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~---~g~~~~~~v~D~~~~~-p~~~~DvaL~lk  206 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTR---LNVPHRTNVADLLEDR-LDEPADVTLLLK  206 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHH---TTCCEEEEECCTTTSC-CCSCCSEEEETT
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHh---cCCCceEEEeeecccC-CCCCcchHHHHH
Confidence            356799999999999999998887889999999999999999998865   3344788888876555 457899999999


Q ss_pred             cccCcCCh--HHHHHHHHhccCCC
Q 029554          170 GLHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      ++|++++.  ...+ ++...|+|+
T Consensus       207 ti~~Le~q~kg~g~-~ll~aL~~~  229 (281)
T 3lcv_B          207 TLPCLETQQRGSGW-EVIDIVNSP  229 (281)
T ss_dssp             CHHHHHHHSTTHHH-HHHHHSSCS
T ss_pred             HHHHhhhhhhHHHH-HHHHHhCCC
Confidence            99999654  2445 888888875

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.36  E-value=2.5e-12  Score=99.13  Aligned_cols=98  Identities=13%  Similarity=0.064  Sum_probs=76.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC-----------
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP-----------  156 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~-----------  156 (191)
                      .++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++... ....++.+..+|... ++           
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~v~~~~~d~~~~~~~~~~~~~~~~~  137 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN-GLENKIFLKLGSALETLQVLIDSKSAPSW  137 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT-TCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence            3677999999999999999988754 579999999999999999887541 122348888888543 22           


Q ss_pred             ---CCC--CCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          157 ---LKE--SSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ---~~~--~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                         |++  ++||+|++....   .+...++.++.++|+||
T Consensus       138 ~~~f~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pg  174 (239)
T 2hnk_A          138 ASDFAFGPSSIDLFFLDADK---ENYPNYYPLILKLLKPG  174 (239)
T ss_dssp             GTTTCCSTTCEEEEEECSCG---GGHHHHHHHHHHHEEEE
T ss_pred             cccccCCCCCcCEEEEeCCH---HHHHHHHHHHHHHcCCC
Confidence               233  789999998654   35678899999999986

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.36  E-value=2.1e-11  Score=91.60  Aligned_cols=92  Identities=10%  Similarity=0.020  Sum_probs=73.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.++++...  ... ++.++++|+..++   ++||+|+++.
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~--~~~-~~~~~~~d~~~~~---~~~D~v~~~~  120 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGE--FKG-KFKVFIGDVSEFN---SRVDIVIMNP  120 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGG--GTT-SEEEEESCGGGCC---CCCSEEEECC
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHH--cCC-CEEEEECchHHcC---CCCCEEEEcC
Confidence            356799999999999999998874 35899999999999999988764  122 6899999988764   4899999998


Q ss_pred             cccCcC--ChHHHHHHHHhcc
Q 029554          170 GLHWTN--DLPGAMIQVSIFL  188 (191)
Q Consensus       170 ~l~~~~--d~~~~l~~i~r~L  188 (191)
                      .+++..  ....++.++.++|
T Consensus       121 p~~~~~~~~~~~~l~~~~~~l  141 (207)
T 1wy7_A          121 PFGSQRKHADRPFLLKAFEIS  141 (207)
T ss_dssp             CCSSSSTTTTHHHHHHHHHHC
T ss_pred             CCccccCCchHHHHHHHHHhc
Confidence            887764  3346677777665

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.36  E-value=2.3e-12  Score=98.93  Aligned_cols=99  Identities=9%  Similarity=-0.095  Sum_probs=74.3

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..++.+|||+|||+|.++..++..++..+|+++|+++.+++.|+++... .+...++.+..+|......++..||+|++.
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~-~gl~~~I~~~~gD~l~~~~~~~~~D~Ivia   97 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE-HGLTSKIDVRLANGLSAFEEADNIDTITIC   97 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHH-TTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred             CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEECchhhccccccccCEEEEe
Confidence            3467799999999999999999988788999999999999999998865 123446999999976554344479998764


Q ss_pred             CcccCcCChHHHHHHHHhccCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                      ...-.  -...++.+..+.|++
T Consensus        98 GmGg~--lI~~IL~~~~~~l~~  117 (230)
T 3lec_A           98 GMGGR--LIADILNNDIDKLQH  117 (230)
T ss_dssp             EECHH--HHHHHHHHTGGGGTT
T ss_pred             CCchH--HHHHHHHHHHHHhCc
Confidence            43221  134556666666655

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.35  E-value=5.5e-12  Score=97.04  Aligned_cols=94  Identities=18%  Similarity=0.107  Sum_probs=76.2

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||||||+|.++..+.   +...|+++|+++.|++.+++....   ...+..+.+.|....+++ ++||+|+++.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~---~g~~~~~~v~D~~~~~~~-~~~DvvLllk  176 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFARE---KDWDFTFALQDVLCAPPA-EAGDLALIFK  176 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHH---TTCEEEEEECCTTTSCCC-CBCSEEEEES
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHh---cCCCceEEEeecccCCCC-CCcchHHHHH
Confidence            357799999999999999887   458999999999999999998754   346788999998877755 5899999999


Q ss_pred             cccCcCCh--HHHHHHHHhccCCC
Q 029554          170 GLHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      ++|++++.  ...+ ++...|+++
T Consensus       177 ~lh~LE~q~~~~~~-~ll~aL~~~  199 (253)
T 3frh_A          177 LLPLLEREQAGSAM-ALLQSLNTP  199 (253)
T ss_dssp             CHHHHHHHSTTHHH-HHHHHCBCS
T ss_pred             HHHHhhhhchhhHH-HHHHHhcCC
Confidence            99998543  3344 666677653

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.35  E-value=2.7e-12  Score=98.65  Aligned_cols=97  Identities=13%  Similarity=-0.004  Sum_probs=76.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC----CCCCC--CCcc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPLKE--SSLD  163 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~----l~~~~--~~fD  163 (191)
                      ++.+|||+|||+|..+..++...+ ..+|+++|+|+.+++.+++.+... +...++.++++|...    ++.++  ++||
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA-GVAEKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-TCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            567999999999999999988754 579999999999999999887541 223458889888542    33333  7899


Q ss_pred             eEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          164 LAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       164 lVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +|++...   ..+...++.++.++|+||
T Consensus       151 ~V~~d~~---~~~~~~~l~~~~~~Lkpg  175 (232)
T 3cbg_A          151 LIFIDAD---KRNYPRYYEIGLNLLRRG  175 (232)
T ss_dssp             EEEECSC---GGGHHHHHHHHHHTEEEE
T ss_pred             EEEECCC---HHHHHHHHHHHHHHcCCC
Confidence            9998765   346788999999999986

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.34  E-value=1.4e-12  Score=104.87  Aligned_cols=101  Identities=8%  Similarity=-0.050  Sum_probs=77.1

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEe
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAIS  167 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis  167 (191)
                      ..++.+|||+|||+|..+..++... +..+|+++|+|+.+++.++++...  ....++.++++|...++..+++||+|++
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~--~g~~~v~~~~~D~~~~~~~~~~fD~Il~  193 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR--LGVLNVILFHSSSLHIGELNVEFDKILL  193 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH--HTCCSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHH--hCCCeEEEEECChhhcccccccCCEEEE
Confidence            4577899999999999999998764 347899999999999999998765  2333688999998776544578999998


Q ss_pred             CC------cccCcCCh----------------HHHHHHHHhccCCC
Q 029554          168 CL------GLHWTNDL----------------PGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~------~l~~~~d~----------------~~~l~~i~r~Lkpg  191 (191)
                      +.      ++++.++.                ..++.++.++||||
T Consensus       194 d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpG  239 (315)
T 1ixk_A          194 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG  239 (315)
T ss_dssp             ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             eCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            42      23332221                47899999999986

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.34  E-value=2.6e-12  Score=101.44  Aligned_cols=101  Identities=16%  Similarity=0.116  Sum_probs=78.9

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc--CCCCceeeEecCCCC-CCCCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEEF-LPLKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~d~~~-l~~~~~~fDlVis  167 (191)
                      .+.+|||+|||+|.++..+.+..+..+++++|+++.+++.|++.+..+.  ....++.++.+|... ++..+++||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            4679999999999999999887566899999999999999998774321  124578999999654 3434578999999


Q ss_pred             CCcccCcCC----hHHHHHHHHhccCCC
Q 029554          168 CLGLHWTND----LPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d----~~~~l~~i~r~Lkpg  191 (191)
                      ....++.+.    ...+++++.++|+||
T Consensus       155 d~~~~~~~~~~l~~~~~~~~~~~~L~pg  182 (275)
T 1iy9_A          155 DSTEPVGPAVNLFTKGFYAGIAKALKED  182 (275)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEE
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHhcCCC
Confidence            765543321    267899999999985

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.34  E-value=2.4e-12  Score=102.99  Aligned_cols=101  Identities=15%  Similarity=0.111  Sum_probs=76.2

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhc--cCCCCceeeEecCCCC-CCCCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEF-LPLKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~~~~~d~~~-l~~~~~~fDlVis  167 (191)
                      .+.+|||||||+|..+..+++..+..+|+++|+++.+++.|++.+..+  .-...++.++.+|... ++..+++||+|++
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~  174 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  174 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence            457999999999999999998876789999999999999999887531  0113568899999653 4444678999999


Q ss_pred             CCcccCcC----ChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTN----DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~----d~~~~l~~i~r~Lkpg  191 (191)
                      +...++.+    ....+++++.++|+||
T Consensus       175 d~~~~~~~~~~l~~~~~l~~~~~~Lkpg  202 (304)
T 2o07_A          175 DSSDPMGPAESLFKESYYQLMKTALKED  202 (304)
T ss_dssp             ECC-----------CHHHHHHHHHEEEE
T ss_pred             CCCCCCCcchhhhHHHHHHHHHhccCCC
Confidence            76654322    1246899999999986

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.33  E-value=3.5e-12  Score=97.34  Aligned_cols=98  Identities=12%  Similarity=0.002  Sum_probs=76.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-C-CC----CCCc
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-P-LK----ESSL  162 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~-~~----~~~f  162 (191)
                      .++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++.+... +...++.++.+|.... + +.    .++|
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~i~~~~~d~~~~~~~~~~~~~~~~~  146 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA-EAEHKIDLRLKPALETLDELLAAGEAGTF  146 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT-TCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-CCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            3567999999999999999988754 579999999999999999887641 2235688999886432 1 11    1689


Q ss_pred             ceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          163 DLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       163 DlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |+|++...   ..+...++.++.++|+||
T Consensus       147 D~v~~d~~---~~~~~~~l~~~~~~L~pg  172 (229)
T 2avd_A          147 DVAVVDAD---KENCSAYYERCLQLLRPG  172 (229)
T ss_dssp             EEEEECSC---STTHHHHHHHHHHHEEEE
T ss_pred             cEEEECCC---HHHHHHHHHHHHHHcCCC
Confidence            99999765   346678999999999986

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.33  E-value=9.8e-13  Score=105.75  Aligned_cols=101  Identities=16%  Similarity=0.093  Sum_probs=74.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc--CCCCceeeEecCCCC-CCCCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEEF-LPLKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~d~~~-l~~~~~~fDlVis  167 (191)
                      .+.+|||||||+|..+..+++..+..+|+++|+++.+++.|++.+....  -...++.++.+|... ++..+++||+|++
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            4579999999999999999987667899999999999999999875321  013568899998653 3334578999999


Q ss_pred             CCcccCcCC--h--HHHHHHHHhccCCC
Q 029554          168 CLGLHWTND--L--PGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d--~--~~~l~~i~r~Lkpg  191 (191)
                      +...++.++  +  ..+++++.++|+||
T Consensus       188 d~~~~~~~~~~l~t~~~l~~~~~~Lkpg  215 (314)
T 2b2c_A          188 DSSDPVGPAESLFGQSYYELLRDALKED  215 (314)
T ss_dssp             CCC-------------HHHHHHHHEEEE
T ss_pred             cCCCCCCcchhhhHHHHHHHHHhhcCCC
Confidence            765433222  1  57899999999986

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.32  E-value=5.6e-13  Score=102.79  Aligned_cols=93  Identities=15%  Similarity=0.082  Sum_probs=61.2

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc-CCCCceeeEe-cCCCCCCCCCCCcceEEe
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH-NDNIETCFVV-GDEEFLPLKESSLDLAIS  167 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-~~~~~~~~~~-~d~~~l~~~~~~fDlVis  167 (191)
                      ..+.+|||||||+|.++..+++.+ ..+|+|+|+|+.|++.++++..... ....++.+.. .++....+....||+|++
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~  114 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFI  114 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSS
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhh
Confidence            346699999999999999998875 3599999999999999876543200 0011232222 222221122334555544


Q ss_pred             CCcccCcCChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +        +..++.++.++||||
T Consensus       115 ~--------l~~~l~~i~rvLkpg  130 (232)
T 3opn_A          115 S--------LDLILPPLYEILEKN  130 (232)
T ss_dssp             C--------GGGTHHHHHHHSCTT
T ss_pred             h--------HHHHHHHHHHhccCC
Confidence            3        277999999999997

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.32  E-value=5.3e-12  Score=98.60  Aligned_cols=88  Identities=11%  Similarity=0.181  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~  153 (191)
                      ...+..++++.+.  ..++.+|||||||+|.++..|++.+  .+|+++|+++.|++.++++...    ..++.++++|+.
T Consensus        14 d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~----~~~v~~i~~D~~   85 (255)
T 3tqs_A           14 DSFVLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQ----QKNITIYQNDAL   85 (255)
T ss_dssp             CHHHHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTT----CTTEEEEESCTT
T ss_pred             CHHHHHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhh----CCCcEEEEcchH
Confidence            3456667777765  4467899999999999999999987  8999999999999999988742    456899999998


Q ss_pred             CCCCC----CCCcceEEeCCc
Q 029554          154 FLPLK----ESSLDLAISCLG  170 (191)
Q Consensus       154 ~l~~~----~~~fDlVis~~~  170 (191)
                      .++++    +++|| |++|.-
T Consensus        86 ~~~~~~~~~~~~~~-vv~NlP  105 (255)
T 3tqs_A           86 QFDFSSVKTDKPLR-VVGNLP  105 (255)
T ss_dssp             TCCGGGSCCSSCEE-EEEECC
T ss_pred             hCCHHHhccCCCeE-EEecCC
Confidence            88754    35688 777754

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.32  E-value=2.1e-12  Score=102.98  Aligned_cols=101  Identities=13%  Similarity=0.043  Sum_probs=75.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc--CCCCceeeEecCCCC-CCCCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEEF-LPLKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~d~~~-l~~~~~~fDlVis  167 (191)
                      .+.+|||+|||+|..+..+++..+..+|+++|+|+.+++.+++.+..+.  ....++.++.+|... ++..+++||+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            4579999999999999999987666899999999999999998874311  113568999999543 3434578999998


Q ss_pred             CCcccCcC-----ChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTN-----DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~-----d~~~~l~~i~r~Lkpg  191 (191)
                      +...+|+.     ....+++++.++|+||
T Consensus       170 d~~~~~~~~~~~l~~~~~l~~~~~~Lkpg  198 (296)
T 1inl_A          170 DSTDPTAGQGGHLFTEEFYQACYDALKED  198 (296)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEE
T ss_pred             cCCCcccCchhhhhHHHHHHHHHHhcCCC
Confidence            75433232     2368899999999986

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.32  E-value=4.8e-12  Score=96.91  Aligned_cols=99  Identities=8%  Similarity=-0.114  Sum_probs=75.2

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC-CCCCCCCCCcceEEe
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFLPLKESSLDLAIS  167 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~~fDlVis  167 (191)
                      ..++.+|||+|||+|.++..++..++..+|+++|+++.+++.|+++.... +...++.+..+|. +.++. ...||+|++
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~-gl~~~i~~~~~d~l~~l~~-~~~~D~Ivi   90 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAH-GLKEKIQVRLANGLAAFEE-TDQVSVITI   90 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT-TCTTTEEEEECSGGGGCCG-GGCCCEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCCceEEEEECchhhhccc-CcCCCEEEE
Confidence            34677999999999999999999888889999999999999999988751 2234689999996 45542 226999887


Q ss_pred             CCcccCcCChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ...-..  -...++.+....|+|+
T Consensus        91 aG~Gg~--~i~~Il~~~~~~L~~~  112 (225)
T 3kr9_A           91 AGMGGR--LIARILEEGLGKLANV  112 (225)
T ss_dssp             EEECHH--HHHHHHHHTGGGCTTC
T ss_pred             cCCChH--HHHHHHHHHHHHhCCC
Confidence            543221  1456777777777764

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.32  E-value=2.9e-12  Score=103.79  Aligned_cols=99  Identities=16%  Similarity=0.123  Sum_probs=76.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC----CCCCcceEE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL----KESSLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~----~~~~fDlVi  166 (191)
                      ++.+|||+|||+|.++..++..+  .+|+++|+|+.+++.+++++...+-...++.++++|+..+..    ..++||+|+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            56799999999999999999876  599999999999999999876521111148899999765321    146899999


Q ss_pred             eCCc----------ccCcCChHHHHHHHHhccCCC
Q 029554          167 SCLG----------LHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~----------l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++--          +++..+...++.++.++|+||
T Consensus       231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkpg  265 (332)
T 2igt_A          231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPK  265 (332)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTT
T ss_pred             ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcC
Confidence            9532          223456778999999999996

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.31  E-value=4.4e-12  Score=97.89  Aligned_cols=107  Identities=12%  Similarity=0.014  Sum_probs=80.5

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC-
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP-  156 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~-  156 (191)
                      .++..+.. ..+..+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++... +...++.++.+|... ++ 
T Consensus        60 ~~l~~l~~-~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-g~~~~i~~~~gda~~~l~~  137 (237)
T 3c3y_A           60 QLMSFVLK-LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA-GVEHKINFIESDAMLALDN  137 (237)
T ss_dssp             HHHHHHHH-HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT-TCGGGEEEEESCHHHHHHH
T ss_pred             HHHHHHHH-hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEEcCHHHHHHH
Confidence            34444333 23567999999999999999988754 589999999999999999887651 223468899998653 22 


Q ss_pred             C-----CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          157 L-----KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ~-----~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +     ++++||+|++...   ..+...++.++.++|+||
T Consensus       138 l~~~~~~~~~fD~I~~d~~---~~~~~~~l~~~~~~L~pG  174 (237)
T 3c3y_A          138 LLQGQESEGSYDFGFVDAD---KPNYIKYHERLMKLVKVG  174 (237)
T ss_dssp             HHHSTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEE
T ss_pred             HHhccCCCCCcCEEEECCc---hHHHHHHHHHHHHhcCCC
Confidence            1     2578999998743   346688999999999986

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.31  E-value=6.3e-12  Score=97.52  Aligned_cols=98  Identities=8%  Similarity=0.021  Sum_probs=71.9

Q ss_pred             hcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCce
Q 029554           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET  145 (191)
Q Consensus        66 ~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~  145 (191)
                      .|.++-.....+...+++.+.  ..++.+|||+|||+|.++..+++.+  .+|+++|+|+.|++.++++...    ..++
T Consensus         7 ~~gQ~fl~d~~~~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~----~~~v   78 (244)
T 1qam_A            7 KHSQNFITSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVD----HDNF   78 (244)
T ss_dssp             ---CCBCCCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTT----CCSE
T ss_pred             cCCccccCCHHHHHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhcc----CCCe
Confidence            344433334455566665554  3467799999999999999999887  8999999999999999987742    2468


Q ss_pred             eeEecCCCCCCCCC-CCcceEEeCCccc
Q 029554          146 CFVVGDEEFLPLKE-SSLDLAISCLGLH  172 (191)
Q Consensus       146 ~~~~~d~~~l~~~~-~~fDlVis~~~l~  172 (191)
                      .++++|+..+++++ ..| .|++|.-.+
T Consensus        79 ~~~~~D~~~~~~~~~~~~-~vv~nlPy~  105 (244)
T 1qam_A           79 QVLNKDILQFKFPKNQSY-KIFGNIPYN  105 (244)
T ss_dssp             EEECCCGGGCCCCSSCCC-EEEEECCGG
T ss_pred             EEEEChHHhCCcccCCCe-EEEEeCCcc
Confidence            99999998888764 445 577775443

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.31  E-value=2.1e-12  Score=104.10  Aligned_cols=101  Identities=14%  Similarity=0.118  Sum_probs=77.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc--CCCCceeeEecCCCC-CCCCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEEF-LPLKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~d~~~-l~~~~~~fDlVis  167 (191)
                      .+.+|||+|||+|.++..+.+..+..+|+++|+|+.+++.+++++....  -...++.++.+|... ++..+++||+|++
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            4579999999999999999887667899999999999999998875310  013568999999653 3323578999999


Q ss_pred             CCcccCc--CCh--HHHHHHHHhccCCC
Q 029554          168 CLGLHWT--NDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~--~d~--~~~l~~i~r~Lkpg  191 (191)
                      +...++.  .+.  ..+++++.++|+||
T Consensus       196 d~~~p~~~~~~l~~~~~l~~~~~~Lkpg  223 (321)
T 2pt6_A          196 DSSDPIGPAETLFNQNFYEKIYNALKPN  223 (321)
T ss_dssp             ECCCSSSGGGGGSSHHHHHHHHHHEEEE
T ss_pred             CCcCCCCcchhhhHHHHHHHHHHhcCCC
Confidence            7643321  122  68899999999986

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.30  E-value=3.8e-12  Score=100.23  Aligned_cols=97  Identities=16%  Similarity=0.196  Sum_probs=76.4

Q ss_pred             hcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCce
Q 029554           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET  145 (191)
Q Consensus        66 ~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~  145 (191)
                      .|.++-.....+.+++++.+.  ..++ +|||+|||+|.++..|++.+  .+|+++|+++.|++.++++..     ..++
T Consensus        24 ~~GQnfL~d~~i~~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~-----~~~v   93 (271)
T 3fut_A           24 RFGQNFLVSEAHLRRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLS-----GLPV   93 (271)
T ss_dssp             TSSCCEECCHHHHHHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTT-----TSSE
T ss_pred             cCCccccCCHHHHHHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcC-----CCCE
Confidence            344443334566777887776  3456 99999999999999999987  899999999999999998863     2468


Q ss_pred             eeEecCCCCCCCCCC-CcceEEeCCccc
Q 029554          146 CFVVGDEEFLPLKES-SLDLAISCLGLH  172 (191)
Q Consensus       146 ~~~~~d~~~l~~~~~-~fDlVis~~~l~  172 (191)
                      .++++|+..+++++. .+|.|++|.-.+
T Consensus        94 ~vi~~D~l~~~~~~~~~~~~iv~NlPy~  121 (271)
T 3fut_A           94 RLVFQDALLYPWEEVPQGSLLVANLPYH  121 (271)
T ss_dssp             EEEESCGGGSCGGGSCTTEEEEEEECSS
T ss_pred             EEEECChhhCChhhccCccEEEecCccc
Confidence            999999988876542 689999986544

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.30  E-value=2.8e-12  Score=101.59  Aligned_cols=101  Identities=14%  Similarity=0.110  Sum_probs=78.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC--CCCceeeEecCCCC-CCCCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN--DNIETCFVVGDEEF-LPLKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~~~~d~~~-l~~~~~~fDlVis  167 (191)
                      .+.+|||+|||+|..+..+.+..+..+++++|+++.+++.+++.+.....  ...++.++.+|... ++..+++||+|++
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  157 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence            45799999999999999998876678999999999999999988753210  13568899999654 3323578999999


Q ss_pred             CCcccCcC--Ch--HHHHHHHHhccCCC
Q 029554          168 CLGLHWTN--DL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~--d~--~~~l~~i~r~Lkpg  191 (191)
                      ....++.+  .+  ..+++++.++|+||
T Consensus       158 d~~~~~~~~~~l~~~~~l~~~~~~L~pg  185 (283)
T 2i7c_A          158 DSSDPIGPAETLFNQNFYEKIYNALKPN  185 (283)
T ss_dssp             ECCCTTTGGGGGSSHHHHHHHHHHEEEE
T ss_pred             cCCCCCCcchhhhHHHHHHHHHHhcCCC
Confidence            76544432  22  68999999999985

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.28  E-value=1.1e-11  Score=104.12  Aligned_cols=101  Identities=16%  Similarity=0.021  Sum_probs=79.6

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCC-ceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGI-EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLA  165 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlV  165 (191)
                      ..++.+|||+|||+|..+..++...+. .+|+++|+|+.+++.++++...  ....++.++++|...++  +++++||+|
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~--~g~~~v~~~~~D~~~~~~~~~~~~fD~V  334 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKR--MGIKIVKPLVKDARKAPEIIGEEVADKV  334 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH--TTCCSEEEECSCTTCCSSSSCSSCEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH--cCCCcEEEEEcChhhcchhhccCCCCEE
Confidence            457789999999999999999886544 7999999999999999988765  23346889999988765  555789999


Q ss_pred             EeC------CcccCcCCh----------------HHHHHHHHhccCCC
Q 029554          166 ISC------LGLHWTNDL----------------PGAMIQVSIFLLPD  191 (191)
Q Consensus       166 is~------~~l~~~~d~----------------~~~l~~i~r~Lkpg  191 (191)
                      +++      .++++.+|.                ..++.++.++||||
T Consensus       335 l~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG  382 (450)
T 2yxl_A          335 LLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPG  382 (450)
T ss_dssp             EEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEE
T ss_pred             EEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            962      234444443                56899999999985

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.27  E-value=7.1e-12  Score=93.22  Aligned_cols=89  Identities=15%  Similarity=0.003  Sum_probs=66.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCC---------ceEEEEECChhHHHHHHHhhhhccCCCCceeeE-ecCCCCCC---
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGI---------EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFV-VGDEEFLP---  156 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~---------~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~-~~d~~~l~---  156 (191)
                      .++.+|||+|||+|.++..+++..+.         .+|+++|+|+..             ...++.++ .+|+...+   
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-------------~~~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-------------PLEGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-------------CCTTCEEECSCCTTSHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-------------cCCCCeEEEeccCCCHHHHH
Confidence            46789999999999999999887543         789999999842             11236777 77866532   


Q ss_pred             -----CCCCCcceEEeCCcccCc----CCh-------HHHHHHHHhccCCC
Q 029554          157 -----LKESSLDLAISCLGLHWT----NDL-------PGAMIQVSIFLLPD  191 (191)
Q Consensus       157 -----~~~~~fDlVis~~~l~~~----~d~-------~~~l~~i~r~Lkpg  191 (191)
                           +++++||+|+|+.++++.    .|.       ..++.++.++||||
T Consensus        88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  138 (196)
T 2nyu_A           88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG  138 (196)
T ss_dssp             HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC
Confidence                 345689999998766543    233       47899999999986

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.27  E-value=5.1e-12  Score=99.56  Aligned_cols=101  Identities=11%  Similarity=-0.091  Sum_probs=77.9

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCC-ceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC----CCCCcc
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGI-EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL----KESSLD  163 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~----~~~~fD  163 (191)
                      ..++.+|||+|||+|..+..++...+. .+|+++|+|+.+++.++++...  ....++.++.+|...++.    ..++||
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~--~g~~~v~~~~~D~~~~~~~~~~~~~~fD  158 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR--MGVLNTIIINADMRKYKDYLLKNEIFFD  158 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHH--TTCCSEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHH--hCCCcEEEEeCChHhcchhhhhccccCC
Confidence            457789999999999999999875433 7999999999999999988765  233468899999776543    257899


Q ss_pred             eEEeCC------ccc------------CcCChHHHHHHHHhccCCC
Q 029554          164 LAISCL------GLH------------WTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       164 lVis~~------~l~------------~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +|+++.      +++            .......++.++.++||||
T Consensus       159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  204 (274)
T 3ajd_A          159 KILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKD  204 (274)
T ss_dssp             EEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEE
T ss_pred             EEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999862      222            1245678899999999986

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.26  E-value=4.5e-12  Score=100.30  Aligned_cols=98  Identities=15%  Similarity=0.101  Sum_probs=75.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc-C--------CCCceeeEecCCCC-CCCCCC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH-N--------DNIETCFVVGDEEF-LPLKES  160 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-~--------~~~~~~~~~~d~~~-l~~~~~  160 (191)
                      .+.+|||||||+|.++..+++. +..+++++|+++.+++.|++.+ ... .        ...++.++.+|... ++. ++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~  151 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR  151 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence            4579999999999999999887 6789999999999999999887 321 0        23568899998543 222 57


Q ss_pred             CcceEEeCCcccCcC--C--hHHHHHHHHhccCCC
Q 029554          161 SLDLAISCLGLHWTN--D--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       161 ~fDlVis~~~l~~~~--d--~~~~l~~i~r~Lkpg  191 (191)
                      +||+|++....++..  .  ...+++++.++|+||
T Consensus       152 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg  186 (281)
T 1mjf_A          152 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP  186 (281)
T ss_dssp             CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE
T ss_pred             CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC
Confidence            899999976644321  1  267899999999986

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.24  E-value=6.3e-12  Score=98.57  Aligned_cols=91  Identities=11%  Similarity=0.000  Sum_probs=73.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc--CCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      .+.+|||||||+|..+..+.+. + .+|+++|+++.+++.|++.+..+.  ....++.++.+|.....   ++||+|++.
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d  146 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL  146 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence            4569999999999999999887 6 899999999999999987664210  12346888888876553   789999987


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .     .|+..+++++.++|+||
T Consensus       147 ~-----~dp~~~~~~~~~~L~pg  164 (262)
T 2cmg_A          147 Q-----EPDIHRIDGLKRMLKED  164 (262)
T ss_dssp             S-----CCCHHHHHHHHTTEEEE
T ss_pred             C-----CChHHHHHHHHHhcCCC
Confidence            3     36677999999999986

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.24  E-value=6.8e-14  Score=108.58  Aligned_cols=86  Identities=10%  Similarity=0.147  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l  155 (191)
                      .+...+++.+.  ..++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.++++..    ...++.++++|+..+
T Consensus        16 ~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~----~~~~v~~~~~D~~~~   87 (245)
T 1yub_A           16 KVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLK----LNTRVTLIHQDILQF   87 (245)
T ss_dssp             TTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTT----TCSEEEECCSCCTTT
T ss_pred             HHHHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhc----cCCceEEEECChhhc
Confidence            34455565554  3467799999999999999999887  899999999999988876653    235689999999988


Q ss_pred             CCCC-CCcceEEeCCc
Q 029554          156 PLKE-SSLDLAISCLG  170 (191)
Q Consensus       156 ~~~~-~~fDlVis~~~  170 (191)
                      ++++ ++| .|++|.-
T Consensus        88 ~~~~~~~f-~vv~n~P  102 (245)
T 1yub_A           88 QFPNKQRY-KIVGNIP  102 (245)
T ss_dssp             TCCCSSEE-EEEEECC
T ss_pred             CcccCCCc-EEEEeCC
Confidence            8764 678 7888753

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.24  E-value=2.5e-11  Score=90.74  Aligned_cols=88  Identities=15%  Similarity=0.054  Sum_probs=66.4

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC--------C--
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL--------K--  158 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~--------~--  158 (191)
                      ..++.+|||+|||+|.++..+++..  .+|+|+|+++..             ...++.++++|+...+.        .  
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~--~~V~gvD~~~~~-------------~~~~v~~~~~D~~~~~~~~~~~~~~~~~   87 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLA--RKIISIDLQEME-------------EIAGVRFIRCDIFKETIFDDIDRALREE   87 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTC--SEEEEEESSCCC-------------CCTTCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcC--CcEEEEeccccc-------------cCCCeEEEEccccCHHHHHHHHHHhhcc
Confidence            3567899999999999999999874  899999999742             12358899999876541        1  


Q ss_pred             -CCCcceEEeCCcccCcC----C-------hHHHHHHHHhccCCC
Q 029554          159 -ESSLDLAISCLGLHWTN----D-------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 -~~~fDlVis~~~l~~~~----d-------~~~~l~~i~r~Lkpg  191 (191)
                       .++||+|+|+.......    |       ...++..+.++||||
T Consensus        88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpG  132 (191)
T 3dou_A           88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNG  132 (191)
T ss_dssp             TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCC
Confidence             14899999987543322    1       245788889999986

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.23  E-value=1.8e-11  Score=102.22  Aligned_cols=100  Identities=11%  Similarity=0.053  Sum_probs=79.0

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceEE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLAI  166 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlVi  166 (191)
                      ..++.+|||+|||+|..+..++..++..+|+++|+|+.+++.++++....   ..++.++++|...++  +++++||+|+
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~---g~~~~~~~~D~~~~~~~~~~~~fD~Vl  320 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL---GMKATVKQGDGRYPSQWCGEQQFDRIL  320 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT---TCCCEEEECCTTCTHHHHTTCCEEEEE
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHc---CCCeEEEeCchhhchhhcccCCCCEEE
Confidence            45778999999999999999998776679999999999999999987652   224788889987765  5567899999


Q ss_pred             eCC------cccCcCCh----------------HHHHHHHHhccCCC
Q 029554          167 SCL------GLHWTNDL----------------PGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~------~l~~~~d~----------------~~~l~~i~r~Lkpg  191 (191)
                      ++.      ++++.++.                ..++.++.++||||
T Consensus       321 ~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpG  367 (429)
T 1sqg_A          321 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG  367 (429)
T ss_dssp             EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE
T ss_pred             EeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            732      34444443                47789999999986

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.22  E-value=5.3e-12  Score=101.09  Aligned_cols=94  Identities=13%  Similarity=0.009  Sum_probs=66.9

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEEC----ChhHHHHHHHhhhhccCCCCceeeEec-CCCCCCCCCCCcc
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDT----SYDMLKLCKDAQQDAHNDNIETCFVVG-DEEFLPLKESSLD  163 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~----s~~~l~~a~~~~~~~~~~~~~~~~~~~-d~~~l~~~~~~fD  163 (191)
                      ..++.+|||||||+|.++..+++.   .+|+++|+    ++.+++...  ...  ....++.++++ |+..++  .++||
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~--~~~--~~~~~v~~~~~~D~~~l~--~~~fD  150 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIP--MST--YGWNLVRLQSGVDVFFIP--PERCD  150 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCC--CCS--TTGGGEEEECSCCTTTSC--CCCCS
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHH--hhh--cCCCCeEEEeccccccCC--cCCCC
Confidence            346779999999999999999887   47999999    665442110  100  11245888888 877664  46899


Q ss_pred             eEEeCCccc---CcCChH---HHHHHHHhccCCC
Q 029554          164 LAISCLGLH---WTNDLP---GAMIQVSIFLLPD  191 (191)
Q Consensus       164 lVis~~~l~---~~~d~~---~~l~~i~r~Lkpg  191 (191)
                      +|+|+.+.+   |..|..   .++.++.++||||
T Consensus       151 ~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpG  184 (305)
T 2p41_A          151 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNN  184 (305)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             EEEECCccccCcchhhHHHHHHHHHHHHHHhCCC
Confidence            999987754   322322   4788899999997

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.21  E-value=9.5e-11  Score=98.04  Aligned_cols=77  Identities=10%  Similarity=0.033  Sum_probs=64.0

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC----CCCCCCCcceE
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPLKESSLDLA  165 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~----l~~~~~~fDlV  165 (191)
                      .++.+|||+|||+|.++..|+...  .+|+|+|+|+.+++.|+++...  +...++.++++|+..    +++++++||+|
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~~--~~V~gvD~s~~al~~A~~n~~~--~~~~~v~f~~~d~~~~l~~~~~~~~~fD~V  360 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARL--NGLQNVTFYHENLEEDVTKQPWAKNGFDKV  360 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHH--TTCCSEEEEECCTTSCCSSSGGGTTCCSEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHH--cCCCceEEEECCHHHHhhhhhhhcCCCCEE
Confidence            356799999999999999999875  8999999999999999988865  334479999999875    33556789999


Q ss_pred             EeCCc
Q 029554          166 ISCLG  170 (191)
Q Consensus       166 is~~~  170 (191)
                      +++--
T Consensus       361 v~dPP  365 (433)
T 1uwv_A          361 LLDPA  365 (433)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            98643

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.15  E-value=5.5e-11  Score=98.32  Aligned_cols=98  Identities=13%  Similarity=0.038  Sum_probs=77.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC-C-ceeeEecCCCCCCC----CCCCcce
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-I-ETCFVVGDEEFLPL----KESSLDL  164 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-~-~~~~~~~d~~~l~~----~~~~fDl  164 (191)
                      ++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.+++++..  +.. . ++.++++|+.....    ...+||+
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~--ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~  296 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVEL--NKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHH--TTCCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHH--cCCCccceEEEECCHHHHHHHHHhcCCCCCE
Confidence            67799999999999999998875 46999999999999999998865  333 3 78999999764321    1468999


Q ss_pred             EEeCCc---------ccCcCChHHHHHHHHhccCCC
Q 029554          165 AISCLG---------LHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       165 Vis~~~---------l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |+++--         .....+....+.++.++|+||
T Consensus       297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  332 (396)
T 3c0k_A          297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEG  332 (396)
T ss_dssp             EEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEE
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999732         223356678899999999885

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.15  E-value=6.5e-10  Score=92.74  Aligned_cols=103  Identities=16%  Similarity=0.108  Sum_probs=73.8

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~  157 (191)
                      .+.+...+.. ..++.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.|+++...  +... +.++.+|+..+..
T Consensus       278 ~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~--~~V~gvD~s~~ai~~A~~n~~~--ngl~-v~~~~~d~~~~~~  351 (425)
T 2jjq_A          278 AVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRG--FNVKGFDSNEFAIEMARRNVEI--NNVD-AEFEVASDREVSV  351 (425)
T ss_dssp             HHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH--HTCC-EEEEECCTTTCCC
T ss_pred             HHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHH--cCCc-EEEEECChHHcCc
Confidence            3344444332 3466799999999999999999876  7999999999999999988764  2333 8999999887642


Q ss_pred             CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          158 KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .  +||+|+++-.-...  ...++..+. .|+|+
T Consensus       352 ~--~fD~Vv~dPPr~g~--~~~~~~~l~-~l~p~  380 (425)
T 2jjq_A          352 K--GFDTVIVDPPRAGL--HPRLVKRLN-REKPG  380 (425)
T ss_dssp             T--TCSEEEECCCTTCS--CHHHHHHHH-HHCCS
T ss_pred             c--CCCEEEEcCCccch--HHHHHHHHH-hcCCC
Confidence            2  89999996542211  234555554 36764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.15  E-value=4.3e-11  Score=105.58  Aligned_cols=98  Identities=14%  Similarity=-0.002  Sum_probs=77.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC--CceeeEecCCCC-CCCCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEF-LPLKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~--~~~~~~~~d~~~-l~~~~~~fDlVis  167 (191)
                      ++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.+++++..  +..  .++.++++|+.. ++...++||+|++
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~--ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~  615 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRL--NGLTGRAHRLIQADCLAWLREANEQFDLIFI  615 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHH--TTCCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHH--cCCCccceEEEecCHHHHHHhcCCCccEEEE
Confidence            57799999999999999988755 35799999999999999998875  332  469999999664 4444578999999


Q ss_pred             CC-----------cccCcCChHHHHHHHHhccCCC
Q 029554          168 CL-----------GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~-----------~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +-           +++...+...++.++.++|+||
T Consensus       616 DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkpg  650 (703)
T 3v97_A          616 DPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAG  650 (703)
T ss_dssp             CCCSBC-------CCBHHHHHHHHHHHHHHHEEEE
T ss_pred             CCccccCCccchhHHHHHHHHHHHHHHHHHhcCCC
Confidence            64           2333456677899999999986

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.14  E-value=2.5e-11  Score=100.14  Aligned_cols=99  Identities=16%  Similarity=-0.071  Sum_probs=73.9

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCC--ceeeEecCCCC-CCC---CCCCcc
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEF-LPL---KESSLD  163 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~--~~~~~~~d~~~-l~~---~~~~fD  163 (191)
                      .++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|++++..  +...  ++.++++|+.. ++.   ...+||
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~--n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD  287 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEA--NHLDMANHQLVVMDVFDYFKYARRHHLTYD  287 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHH--TTCCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHH--cCCCccceEEEECCHHHHHHHHHHhCCCcc
Confidence            366799999999999999998864 35899999999999999998865  3333  78999999754 321   245899


Q ss_pred             eEEeCCcc-----cCcC----ChHHHHHHHHhccCCC
Q 029554          164 LAISCLGL-----HWTN----DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       164 lVis~~~l-----~~~~----d~~~~l~~i~r~Lkpg  191 (191)
                      +|+++--.     .+..    +...++.++.++|+||
T Consensus       288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pg  324 (385)
T 2b78_A          288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN  324 (385)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE
T ss_pred             EEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCC
Confidence            99985322     2333    3445677778999885

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.12  E-value=7.4e-11  Score=99.82  Aligned_cols=99  Identities=8%  Similarity=-0.034  Sum_probs=75.9

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC-CCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-KESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~fDlVis~  168 (191)
                      ++.+|||+|||+|..+..++... +..+|+++|+|+.+++.++++....  ...++.++++|...++. .+++||.|+++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~--g~~nv~~~~~D~~~~~~~~~~~fD~Il~D  194 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRC--GISNVALTHFDGRVFGAAVPEMFDAILLD  194 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHH--TCCSEEEECCCSTTHHHHSTTCEEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCcEEEEeCCHHHhhhhccccCCEEEEC
Confidence            77899999999999999998764 3478999999999999999988652  33468889999877653 45789999983


Q ss_pred             ---C---cccCcCC----------------hHHHHHHHHhccCCC
Q 029554          169 ---L---GLHWTND----------------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ---~---~l~~~~d----------------~~~~l~~i~r~Lkpg  191 (191)
                         .   ++...+|                ...++.++.++||||
T Consensus       195 ~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG  239 (479)
T 2frx_A          195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG  239 (479)
T ss_dssp             CCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             CCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence               1   2222222                236788899999986

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.12  E-value=1.8e-10  Score=90.94  Aligned_cols=96  Identities=9%  Similarity=-0.047  Sum_probs=75.1

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..++.+|||+|||+|.++..++..+ .++|+++|+|+.+++.+++++.. ++...++.++++|...++ +.+.||.|+++
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~-N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~  199 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHL-NKVEDRMSAYNMDNRDFP-GENIADRILMG  199 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHH-TTCTTTEEEECSCTTTCC-CCSCEEEEEEC
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEeCcHHHhc-cccCCCEEEEC
Confidence            4578899999999999999888775 36899999999999999998875 233456899999987776 35789999987


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .-    .....++..+.++||||
T Consensus       200 ~p----~~~~~~l~~a~~~lk~g  218 (278)
T 3k6r_A          200 YV----VRTHEFIPKALSIAKDG  218 (278)
T ss_dssp             CC----SSGGGGHHHHHHHEEEE
T ss_pred             CC----CcHHHHHHHHHHHcCCC
Confidence            43    22345666777777764

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.10  E-value=7.4e-11  Score=97.51  Aligned_cols=97  Identities=9%  Similarity=-0.040  Sum_probs=71.2

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-CCCCCCcceEEeC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-PLKESSLDLAISC  168 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~~~~~~fDlVis~  168 (191)
                      .++.+|||+|||+|.++..++..+  ..|+++|+|+.+++.+++++..  +... ..+.++|+... +...+.||+|+++
T Consensus       213 ~~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~--ng~~-~~~~~~D~~~~l~~~~~~fD~Ii~d  287 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALR--LGLR-VDIRHGEALPTLRGLEGPFHHVLLD  287 (393)
T ss_dssp             CTTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH--HTCC-CEEEESCHHHHHHTCCCCEEEEEEC
T ss_pred             cCCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHH--hCCC-CcEEEccHHHHHHHhcCCCCEEEEC
Confidence            357899999999999999999876  5599999999999999998865  2221 34567886542 2213449999997


Q ss_pred             CcccC---------cCChHHHHHHHHhccCCC
Q 029554          169 LGLHW---------TNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~---------~~d~~~~l~~i~r~Lkpg  191 (191)
                      -....         ..+...++.++.++|+||
T Consensus       288 pP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpG  319 (393)
T 4dmg_A          288 PPTLVKRPEELPAMKRHLVDLVREALRLLAEE  319 (393)
T ss_dssp             CCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEE
T ss_pred             CCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            43211         124457888889999885

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.10  E-value=2.4e-10  Score=92.73  Aligned_cols=97  Identities=11%  Similarity=-0.055  Sum_probs=74.3

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCC-----ceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGI-----EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLA  165 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~-----~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlV  165 (191)
                      ++.+|||+|||+|.++..+.+..+.     .+++|+|+++.+++.|+.+....   ..++.+.++|..... ..+.||+|
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~---g~~~~i~~~D~l~~~-~~~~fD~I  205 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ---RQKMTLLHQDGLANL-LVDPVDVV  205 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH---TCCCEEEESCTTSCC-CCCCEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC---CCCceEEECCCCCcc-ccCCccEE
Confidence            4568999999999999888765432     68999999999999999876531   125788889865432 45789999


Q ss_pred             EeCCcccCcCCh------------------HHHHHHHHhccCCC
Q 029554          166 ISCLGLHWTNDL------------------PGAMIQVSIFLLPD  191 (191)
Q Consensus       166 is~~~l~~~~d~------------------~~~l~~i~r~Lkpg  191 (191)
                      ++|-.++++.+.                  ..++.++.+.|+||
T Consensus       206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~g  249 (344)
T 2f8l_A          206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPG  249 (344)
T ss_dssp             EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEE
T ss_pred             EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCC
Confidence            999877665332                  15788899999875

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.09  E-value=1e-10  Score=93.44  Aligned_cols=87  Identities=13%  Similarity=0.076  Sum_probs=68.4

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--  156 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--  156 (191)
                      ..+++.+.  ..++.+|||+|||+|..+..+++.++..+|+++|.|+.|++.++++....  . .++.++++|+..++  
T Consensus        16 ~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~--g-~~v~~v~~d~~~l~~~   90 (301)
T 1m6y_A           16 REVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF--S-DRVSLFKVSYREADFL   90 (301)
T ss_dssp             HHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG--T-TTEEEEECCGGGHHHH
T ss_pred             HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc--C-CcEEEEECCHHHHHHH
Confidence            34444554  44778999999999999999998866689999999999999999987642  2 57999999987764  


Q ss_pred             CC---CCCcceEEeCCc
Q 029554          157 LK---ESSLDLAISCLG  170 (191)
Q Consensus       157 ~~---~~~fDlVis~~~  170 (191)
                      ++   .++||.|+++..
T Consensus        91 l~~~g~~~~D~Vl~D~g  107 (301)
T 1m6y_A           91 LKTLGIEKVDGILMDLG  107 (301)
T ss_dssp             HHHTTCSCEEEEEEECS
T ss_pred             HHhcCCCCCCEEEEcCc
Confidence            11   157999998654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.08  E-value=2.1e-11  Score=100.44  Aligned_cols=97  Identities=11%  Similarity=-0.036  Sum_probs=75.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC----CCCCcceEE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL----KESSLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~----~~~~fDlVi  166 (191)
                      ++.+|||+|||+|.++..++...  .+|+++|+|+.+++.+++++..  +...++.++++|+.....    .+++||+|+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~n~~~--n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii  284 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGF--REVVAVDSSAEALRRAEENARL--NGLGNVRVLEANAFDLLRRLEKEGERFDLVV  284 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE--EEEEEEESCHHHHHHHHHHHHH--TTCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHH--cCCCCceEEECCHHHHHHHHHhcCCCeeEEE
Confidence            56689999999999999998864  8999999999999999998865  344458999999764321    256899999


Q ss_pred             eCCcc---------cCcCChHHHHHHHHhccCCC
Q 029554          167 SCLGL---------HWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l---------~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++--.         .+..+...++.++.++|+||
T Consensus       285 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  318 (382)
T 1wxx_A          285 LDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG  318 (382)
T ss_dssp             ECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCC
Confidence            85322         11234567888899999885

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.08  E-value=1.8e-10  Score=91.10  Aligned_cols=96  Identities=13%  Similarity=0.032  Sum_probs=69.9

Q ss_pred             hcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCC--ceEEEEECChhHHHHHHHhhhhccCCCC
Q 029554           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGI--EKLIMMDTSYDMLKLCKDAQQDAHNDNI  143 (191)
Q Consensus        66 ~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~  143 (191)
                      .|.++-.....+..++++.+.  ..++.+|||||||+|.++..|++.+..  .+|+++|+++.|++.++++.      ..
T Consensus        19 ~~GQ~fL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~------~~   90 (279)
T 3uzu_A           19 RFGQNFLVDHGVIDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF------GE   90 (279)
T ss_dssp             CCSCCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH------GG
T ss_pred             cCCccccCCHHHHHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc------CC
Confidence            344443334456667777665  446789999999999999999987621  33999999999999998873      23


Q ss_pred             ceeeEecCCCCCCCCCC------CcceEEeCC
Q 029554          144 ETCFVVGDEEFLPLKES------SLDLAISCL  169 (191)
Q Consensus       144 ~~~~~~~d~~~l~~~~~------~fDlVis~~  169 (191)
                      ++.++++|+..+++++-      ..+.||+|.
T Consensus        91 ~v~~i~~D~~~~~~~~~~~~~~~~~~~vv~Nl  122 (279)
T 3uzu_A           91 LLELHAGDALTFDFGSIARPGDEPSLRIIGNL  122 (279)
T ss_dssp             GEEEEESCGGGCCGGGGSCSSSSCCEEEEEEC
T ss_pred             CcEEEECChhcCChhHhcccccCCceEEEEcc
Confidence            58999999988775431      234677775

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.06  E-value=1.6e-10  Score=95.45  Aligned_cols=98  Identities=12%  Similarity=-0.043  Sum_probs=76.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCC-ceeeEecCCCCCCC----CCCCcceE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPL----KESSLDLA  165 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-~~~~~~~d~~~l~~----~~~~fDlV  165 (191)
                      ++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.+++++..  +... ++.++++|+.....    ++++||+|
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g-~~~v~~vD~s~~~l~~a~~n~~~--n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  293 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKL--NGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV  293 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHH--TTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHH--cCCCccceEEECCHHHHHHHHHhhCCCCCEE
Confidence            67799999999999999998863 46999999999999999998865  3333 78999999764321    25689999


Q ss_pred             EeCCcc---------cCcCChHHHHHHHHhccCCC
Q 029554          166 ISCLGL---------HWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       166 is~~~l---------~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++--.         ++..+...++.++.++|+||
T Consensus       294 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  328 (396)
T 2as0_A          294 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG  328 (396)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            996432         11245667889999999885

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.06  E-value=3.2e-11  Score=101.47  Aligned_cols=100  Identities=12%  Similarity=-0.003  Sum_probs=75.5

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-CCCCCcceEE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKESSLDLAI  166 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-~~~~~fDlVi  166 (191)
                      ..++.+|||+|||+|..+..++...+ ..+|+++|+|+.+++.+++++...  ... +.++++|...++ ..+++||+|+
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~--G~~-v~~~~~Da~~l~~~~~~~FD~Il  175 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW--GAP-LAVTQAPPRALAEAFGTYFHRVL  175 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH--CCC-CEEECSCHHHHHHHHCSCEEEEE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCe-EEEEECCHHHhhhhccccCCEEE
Confidence            45788999999999999999987643 368999999999999999988752  223 788888876554 2357899999


Q ss_pred             eCC------cccCcCCh----------------HHHHHHHHhccCCC
Q 029554          167 SCL------GLHWTNDL----------------PGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~------~l~~~~d~----------------~~~l~~i~r~Lkpg  191 (191)
                      ++.      ++...++.                ..++.++.++||||
T Consensus       176 ~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG  222 (464)
T 3m6w_A          176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPG  222 (464)
T ss_dssp             EECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred             ECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            632      22222222                56889999999985

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.05  E-value=3.9e-10  Score=87.69  Aligned_cols=95  Identities=15%  Similarity=0.189  Sum_probs=70.5

Q ss_pred             cCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCcee
Q 029554           67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC  146 (191)
Q Consensus        67 y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~  146 (191)
                      |.++-.....+..++++.+.  ..++.+|||+|||+|.++..|++.+ ..+|+++|+++.|++.++++ .     ..++.
T Consensus         9 ~GQnfl~d~~i~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~-~~~v~avEid~~~~~~~~~~-~-----~~~v~   79 (249)
T 3ftd_A            9 FGQHLLVSEGVLKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQHP-LKKLYVIELDREMVENLKSI-G-----DERLE   79 (249)
T ss_dssp             CCSSCEECHHHHHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTSC-CSEEEEECCCHHHHHHHTTS-C-----CTTEE
T ss_pred             ccccccCCHHHHHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHcC-CCeEEEEECCHHHHHHHHhc-c-----CCCeE
Confidence            44433334556677777665  4467899999999999999999873 48999999999999999765 2     24589


Q ss_pred             eEecCCCCCCCCCC--CcceEEeCCcc
Q 029554          147 FVVGDEEFLPLKES--SLDLAISCLGL  171 (191)
Q Consensus       147 ~~~~d~~~l~~~~~--~fDlVis~~~l  171 (191)
                      ++++|+..+++++.  .| .|++|.-.
T Consensus        80 ~i~~D~~~~~~~~~~~~~-~vv~NlPy  105 (249)
T 3ftd_A           80 VINEDASKFPFCSLGKEL-KVVGNLPY  105 (249)
T ss_dssp             EECSCTTTCCGGGSCSSE-EEEEECCT
T ss_pred             EEEcchhhCChhHccCCc-EEEEECch
Confidence            99999998876542  33 66766543

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.05  E-value=4e-10  Score=91.26  Aligned_cols=90  Identities=9%  Similarity=-0.035  Sum_probs=71.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCC-CCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND-NIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      .++.+|||+|||+|.++.. +..  ..+|+++|+|+.+++.+++++..  +. ..++.++++|.....   ++||+|+++
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~~--~~~V~~vD~s~~ai~~a~~n~~~--n~l~~~v~~~~~D~~~~~---~~fD~Vi~d  265 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CKN--AKKIYAIDINPHAIELLKKNIKL--NKLEHKIIPILSDVREVD---VKGNRVIMN  265 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TTT--SSEEEEEESCHHHHHHHHHHHHH--TTCTTTEEEEESCGGGCC---CCEEEEEEC
T ss_pred             CCCCEEEEccCccCHHHHh-ccC--CCEEEEEECCHHHHHHHHHHHHH--cCCCCcEEEEECChHHhc---CCCcEEEEC
Confidence            3677999999999999999 773  48999999999999999998865  33 246899999987665   789999997


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .--.    ...++.++.++|+||
T Consensus       266 pP~~----~~~~l~~~~~~L~~g  284 (336)
T 2yx1_A          266 LPKF----AHKFIDKALDIVEEG  284 (336)
T ss_dssp             CTTT----GGGGHHHHHHHEEEE
T ss_pred             CcHh----HHHHHHHHHHHcCCC
Confidence            4211    236778888888774

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.05  E-value=4e-10  Score=93.10  Aligned_cols=116  Identities=9%  Similarity=-0.035  Sum_probs=81.1

Q ss_pred             chHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC------------------------------------
Q 029554           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG------------------------------------  114 (191)
Q Consensus        71 ~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~------------------------------------  114 (191)
                      ..+++.++..++....  -.++..|||.+||+|.++..++..+.                                    
T Consensus       183 Apl~e~lAa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~  260 (393)
T 3k0b_A          183 APIKETMAAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANY  260 (393)
T ss_dssp             CSCCHHHHHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCT
T ss_pred             CCCcHHHHHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcc
Confidence            4456667777775554  23567899999999999776654321                                    


Q ss_pred             --CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC--CcccCc--CChHHHHHHHHhcc
Q 029554          115 --IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC--LGLHWT--NDLPGAMIQVSIFL  188 (191)
Q Consensus       115 --~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~--~~l~~~--~d~~~~l~~i~r~L  188 (191)
                        ..+|+|+|+|+.|++.|++++... +....+.+.++|+..++.+ .+||+|++|  ++...-  .+...+..++.++|
T Consensus       261 ~~~~~V~GvDid~~al~~Ar~Na~~~-gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~l  338 (393)
T 3k0b_A          261 DQPLNIIGGDIDARLIEIAKQNAVEA-GLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVY  338 (393)
T ss_dssp             TCCCCEEEEESCHHHHHHHHHHHHHT-TCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEECCHHHHHHHHHHHHHc-CCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHH
Confidence              146999999999999999988651 2233589999999888754 589999999  333211  23445666666666


Q ss_pred             CC
Q 029554          189 LP  190 (191)
Q Consensus       189 kp  190 (191)
                      |+
T Consensus       339 k~  340 (393)
T 3k0b_A          339 KR  340 (393)
T ss_dssp             HT
T ss_pred             hc
Confidence            53

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.00  E-value=1.3e-09  Score=89.78  Aligned_cols=115  Identities=7%  Similarity=-0.100  Sum_probs=81.8

Q ss_pred             hHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-------------------------------------
Q 029554           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-------------------------------------  114 (191)
Q Consensus        72 ~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-------------------------------------  114 (191)
                      .+++.++..++....  -.++..|||.+||+|.+....+....                                     
T Consensus       177 pl~e~LAaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~  254 (384)
T 3ldg_A          177 PIKENMAAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYD  254 (384)
T ss_dssp             CCCHHHHHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTT
T ss_pred             CCcHHHHHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhcc
Confidence            345566666665554  23567899999999998876654321                                     


Q ss_pred             -CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC--CcccCc--CChHHHHHHHHhccC
Q 029554          115 -IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC--LGLHWT--NDLPGAMIQVSIFLL  189 (191)
Q Consensus       115 -~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~--~~l~~~--~d~~~~l~~i~r~Lk  189 (191)
                       ..+++|+|+++.|++.|+++.... +....+.+.++|+..++.+ .+||+|++|  ++...-  .+...+..++.++||
T Consensus       255 ~~~~v~GvDid~~al~~Ar~Na~~~-gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk  332 (384)
T 3ldg_A          255 IQLDISGFDFDGRMVEIARKNAREV-GLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFA  332 (384)
T ss_dssp             CCCCEEEEESCHHHHHHHHHHHHHT-TCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHT
T ss_pred             CCceEEEEECCHHHHHHHHHHHHHc-CCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHh
Confidence             145999999999999999988651 2233589999999888755 589999998  433321  245567777777776


Q ss_pred             C
Q 029554          190 P  190 (191)
Q Consensus       190 p  190 (191)
                      +
T Consensus       333 ~  333 (384)
T 3ldg_A          333 P  333 (384)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=99.00  E-value=3.4e-10  Score=88.15  Aligned_cols=85  Identities=12%  Similarity=0.085  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCce--EEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEK--LIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~--v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~  153 (191)
                      .+..++++.+.  ..++.+|||||||+|.++. +.. +  .+  |+++|+++.|++.++++...    ..++.++++|+.
T Consensus         8 ~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~~-~--~~~~v~avEid~~~~~~a~~~~~~----~~~v~~i~~D~~   77 (252)
T 1qyr_A            8 FVIDSIVSAIN--PQKGQAMVEIGPGLAALTE-PVG-E--RLDQLTVIELDRDLAARLQTHPFL----GPKLTIYQQDAM   77 (252)
T ss_dssp             HHHHHHHHHHC--CCTTCCEEEECCTTTTTHH-HHH-T--TCSCEEEECCCHHHHHHHHTCTTT----GGGEEEECSCGG
T ss_pred             HHHHHHHHhcC--CCCcCEEEEECCCCcHHHH-hhh-C--CCCeEEEEECCHHHHHHHHHHhcc----CCceEEEECchh
Confidence            34556666654  3467789999999999999 754 5  45  99999999999999887642    246899999988


Q ss_pred             CCCCCC-----CCcceEEeCCc
Q 029554          154 FLPLKE-----SSLDLAISCLG  170 (191)
Q Consensus       154 ~l~~~~-----~~fDlVis~~~  170 (191)
                      .+++++     +..|.|++|.-
T Consensus        78 ~~~~~~~~~~~~~~~~vvsNlP   99 (252)
T 1qyr_A           78 TFNFGELAEKMGQPLRVFGNLP   99 (252)
T ss_dssp             GCCHHHHHHHHTSCEEEEEECC
T ss_pred             hCCHHHhhcccCCceEEEECCC
Confidence            876542     23478888865

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.97  E-value=1e-09  Score=90.48  Aligned_cols=114  Identities=11%  Similarity=-0.010  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC--------------------------------------
Q 029554           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG--------------------------------------  114 (191)
Q Consensus        73 ~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--------------------------------------  114 (191)
                      +++.++..++....  ..++.+|||.+||+|.++..++..+.                                      
T Consensus       179 l~e~lAa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  256 (385)
T 3ldu_A          179 IRETLAAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNES  256 (385)
T ss_dssp             CCHHHHHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSC
T ss_pred             CcHHHHHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccC
Confidence            45556666665544  23567899999999998877754321                                      


Q ss_pred             CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccC-c---CChHHHHHHHHhccCC
Q 029554          115 IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHW-T---NDLPGAMIQVSIFLLP  190 (191)
Q Consensus       115 ~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~-~---~d~~~~l~~i~r~Lkp  190 (191)
                      ..+|+|+|+++.+++.|++++... +....+.+.++|+..++.+ ++||+|++|--... +   .+...+..++.++||+
T Consensus       257 ~~~V~GvDid~~ai~~Ar~Na~~~-gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~  334 (385)
T 3ldu_A          257 KFKIYGYDIDEESIDIARENAEIA-GVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK  334 (385)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHH-TCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CceEEEEECCHHHHHHHHHHHHHc-CCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh
Confidence            147999999999999999987651 2234689999998887754 58999999865321 1   2345566777666654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.94  E-value=9.2e-10  Score=87.34  Aligned_cols=85  Identities=15%  Similarity=-0.050  Sum_probs=61.7

Q ss_pred             ccCCCeEEEEcC------CccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceee-EecCCCCCCCCCC
Q 029554           89 RKTFPTALCLGG------SLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCF-VVGDEEFLPLKES  160 (191)
Q Consensus        89 ~~~~~~VLDlGc------G~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~-~~~d~~~l~~~~~  160 (191)
                      ..++.+|||+||      |+|.  ..+++..+ ..+|+++|+|+.        .       .++.+ +++|+..++++ +
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v-------~~v~~~i~gD~~~~~~~-~  122 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V-------SDADSTLIGDCATVHTA-N  122 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B-------CSSSEEEESCGGGCCCS-S
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C-------CCCEEEEECccccCCcc-C
Confidence            346779999999      4466  33444433 479999999997        1       13778 99998887754 6


Q ss_pred             CcceEEeCCcccCc-----------CChHHHHHHHHhccCCC
Q 029554          161 SLDLAISCLGLHWT-----------NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       161 ~fDlVis~~~l~~~-----------~d~~~~l~~i~r~Lkpg  191 (191)
                      +||+|+|+...++.           .....+++++.++||||
T Consensus       123 ~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpG  164 (290)
T 2xyq_A          123 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALG  164 (290)
T ss_dssp             CEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEE
T ss_pred             cccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCC
Confidence            89999998654321           11347899999999986

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.93  E-value=4.1e-10  Score=94.57  Aligned_cols=101  Identities=10%  Similarity=-0.063  Sum_probs=74.7

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-CCCCCcceEE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKESSLDLAI  166 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-~~~~~fDlVi  166 (191)
                      ..++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++++...  ...++.+...|...++ ..+++||.|+
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~--g~~nv~v~~~Da~~l~~~~~~~FD~Il  180 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERW--GVSNAIVTNHAPAELVPHFSGFFDRIV  180 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH--TCSSEEEECCCHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCCceEEEeCCHHHhhhhccccCCEEE
Confidence            4578899999999999999888753 2368999999999999999988752  3346888888876553 2347899999


Q ss_pred             eCCc------ccCcCC----------------hHHHHHHHHhccCCC
Q 029554          167 SCLG------LHWTND----------------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~------l~~~~d----------------~~~~l~~i~r~Lkpg  191 (191)
                      ++.-      +..-++                ...++.++.++||||
T Consensus       181 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG  227 (456)
T 3m4x_A          181 VDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNK  227 (456)
T ss_dssp             EECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEE
T ss_pred             ECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            8532      111111                126788888999985

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.93  E-value=2.8e-09  Score=89.39  Aligned_cols=111  Identities=8%  Similarity=-0.074  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-------------CCceEEEEECChhHHHHHHHhhhhccCCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-------------GIEKLIMMDTSYDMLKLCKDAQQDAHNDN  142 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-------------~~~~v~~vD~s~~~l~~a~~~~~~~~~~~  142 (191)
                      .+...+++.+.  ..++.+|||.|||+|.++..+.+..             +..+++|+|+++.+++.|+.+...  ...
T Consensus       158 ~v~~~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l--~g~  233 (445)
T 2okc_A          158 PLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL--HGI  233 (445)
T ss_dssp             HHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH--TTC
T ss_pred             HHHHHHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH--hCC
Confidence            44545555443  4456799999999999988776531             236799999999999999887643  122


Q ss_pred             C--ceeeEecCCCCCCCCCCCcceEEeCCcccCcC--C---------------hHHHHHHHHhccCCC
Q 029554          143 I--ETCFVVGDEEFLPLKESSLDLAISCLGLHWTN--D---------------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       143 ~--~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~--d---------------~~~~l~~i~r~Lkpg  191 (191)
                      .  ...+.++|....+.. ++||+|++|--+....  +               ...++.++.++||||
T Consensus       234 ~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~g  300 (445)
T 2okc_A          234 GTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG  300 (445)
T ss_dssp             CSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE
T ss_pred             CcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccC
Confidence            1  577889997766543 4899999996544321  1               136789999999885

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.92  E-value=1.4e-09  Score=90.02  Aligned_cols=78  Identities=13%  Similarity=0.037  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l  155 (191)
                      +.+.+++.+.  ..+..+|||+|||+|.++..+.+.. +..+++|+|+++.+++.|           .++.++++|+...
T Consensus        27 l~~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-----------~~~~~~~~D~~~~   93 (421)
T 2ih2_A           27 VVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----------PWAEGILADFLLW   93 (421)
T ss_dssp             HHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----------TTEEEEESCGGGC
T ss_pred             HHHHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-----------CCCcEEeCChhhc
Confidence            3444444443  2345699999999999999988753 457999999999988665           2378888997766


Q ss_pred             CCCCCCcceEEeC
Q 029554          156 PLKESSLDLAISC  168 (191)
Q Consensus       156 ~~~~~~fDlVis~  168 (191)
                      + +.++||+|++|
T Consensus        94 ~-~~~~fD~Ii~N  105 (421)
T 2ih2_A           94 E-PGEAFDLILGN  105 (421)
T ss_dssp             C-CSSCEEEEEEC
T ss_pred             C-ccCCCCEEEEC
Confidence            5 34689999997

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.91  E-value=2.6e-10  Score=89.18  Aligned_cols=81  Identities=14%  Similarity=0.071  Sum_probs=61.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECCh-------hHHHHHHHhhhhccCCC-CceeeEecCCCCC-C-CCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY-------DMLKLCKDAQQDAHNDN-IETCFVVGDEEFL-P-LKE  159 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~-------~~l~~a~~~~~~~~~~~-~~~~~~~~d~~~l-~-~~~  159 (191)
                      .++.+|||+|||+|.++..++..+  .+|+++|+|+       .+++.++++...  +.. .++.++++|.+.+ + +++
T Consensus        82 ~~~~~VLDlgcG~G~~a~~lA~~g--~~V~~vD~s~~~~~ll~~~l~~a~~n~~~--~~~~~ri~~~~~d~~~~l~~~~~  157 (258)
T 2r6z_A           82 TAHPTVWDATAGLGRDSFVLASLG--LTVTAFEQHPAVACLLSDGIRRALLNPET--QDTAARINLHFGNAAEQMPALVK  157 (258)
T ss_dssp             GGCCCEEETTCTTCHHHHHHHHTT--CCEEEEECCHHHHHHHHHHHHHHHHSHHH--HHHHTTEEEEESCHHHHHHHHHH
T ss_pred             CCcCeEEEeeCccCHHHHHHHHhC--CEEEEEECChhhhHHHHHHHHHHHhHHHh--hCCccCeEEEECCHHHHHHhhhc
Confidence            356789999999999999999876  7999999999       899888776543  112 2489999997653 3 333


Q ss_pred             --CCcceEEeCCcccCc
Q 029554          160 --SSLDLAISCLGLHWT  174 (191)
Q Consensus       160 --~~fDlVis~~~l~~~  174 (191)
                        ++||+|+++-.+++.
T Consensus       158 ~~~~fD~V~~dP~~~~~  174 (258)
T 2r6z_A          158 TQGKPDIVYLDPMYPER  174 (258)
T ss_dssp             HHCCCSEEEECCCC---
T ss_pred             cCCCccEEEECCCCCCc
Confidence              689999998776653

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.88  E-value=2.8e-09  Score=83.17  Aligned_cols=99  Identities=11%  Similarity=-0.026  Sum_probs=66.3

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..+..+|||||||+|.+++.++...+...++++|++.++....... .   ....++..+..+++...+++++||+|+|.
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~---~~g~~ii~~~~~~dv~~l~~~~~DlVlsD  147 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-Q---SLGWNIITFKDKTDIHRLEPVKCDTLLCD  147 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-C---BTTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-C---cCCCCeEEEeccceehhcCCCCccEEEec
Confidence            4567799999999999999887765567899999986541110000 0   01124455666666566777899999999


Q ss_pred             Cccc----CcCChH--HHHHHHHhccCCC
Q 029554          169 LGLH----WTNDLP--GAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~----~~~d~~--~~l~~i~r~Lkpg  191 (191)
                      .+.+    +++...  .++..+.++|+||
T Consensus       148 ~apnsG~~~~D~~rs~~LL~~a~~~LkpG  176 (277)
T 3evf_A          148 IGESSSSSVTEGERTVRVLDTVEKWLACG  176 (277)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CccCcCchHHHHHHHHHHHHHHHHHhCCC
Confidence            8776    332222  2357778899986

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.85  E-value=1.9e-09  Score=89.20  Aligned_cols=76  Identities=16%  Similarity=0.090  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-CC-CCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-PL-KESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~~-~~~~fDlVis~  168 (191)
                      ++.+|||+|||+|..+..++..+  .+|+++|+|+.+++.++++.....+...++.++++|+... +. ++++||+|+++
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            47899999999999999998876  8999999999999999998865211225799999997753 32 23579999985

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.82  E-value=1.1e-08  Score=83.75  Aligned_cols=73  Identities=7%  Similarity=-0.085  Sum_probs=59.1

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCC----------
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKE----------  159 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~----------  159 (191)
                      +.+|||+|||+|.++..++..+  .+|+++|+|+.+++.+++++..  +...++.++.+|++.+.  +..          
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~--ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~  289 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAA--NHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI  289 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHH--TTCCSEEEECCCSHHHHHHHSSCCCCTTGGGS
T ss_pred             CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHH--cCCCceEEEECCHHHHHHHHhhcccccccccc
Confidence            5689999999999999998865  7999999999999999988865  34457899999976431  111          


Q ss_pred             ----CCcceEEeC
Q 029554          160 ----SSLDLAISC  168 (191)
Q Consensus       160 ----~~fDlVis~  168 (191)
                          .+||+|+++
T Consensus       290 ~~~~~~fD~Vv~d  302 (369)
T 3bt7_A          290 DLKSYQCETIFVD  302 (369)
T ss_dssp             CGGGCCEEEEEEC
T ss_pred             ccccCCCCEEEEC
Confidence                379999975

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.75  E-value=2.5e-08  Score=81.69  Aligned_cols=84  Identities=20%  Similarity=0.114  Sum_probs=55.6

Q ss_pred             CCeEEEEcCCccHHHHHHhh--------cC-------CCceEEEEECChhHHHHHHHhhhhccC----------CCCcee
Q 029554           92 FPTALCLGGSLEAVRRLLRG--------RG-------GIEKLIMMDTSYDMLKLCKDAQQDAHN----------DNIETC  146 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~--------~~-------~~~~v~~vD~s~~~l~~a~~~~~~~~~----------~~~~~~  146 (191)
                      .-+|+|+|||+|.++..+..        .+       |.-+|...|.........=+.+.....          ...+..
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            35899999999999887731        11       567899999888876555444332100          000112


Q ss_pred             eEe---cCCCCCCCCCCCcceEEeCCcccCcC
Q 029554          147 FVV---GDEEFLPLKESSLDLAISCLGLHWTN  175 (191)
Q Consensus       147 ~~~---~d~~~l~~~~~~fDlVis~~~l~~~~  175 (191)
                      +..   +.+-.-.||+++||+|+|+.+|||+.
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls  164 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLS  164 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCS
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeec
Confidence            222   23333457889999999999999986

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.74  E-value=4.6e-08  Score=78.28  Aligned_cols=78  Identities=6%  Similarity=-0.109  Sum_probs=62.4

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC---CCcce
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE---SSLDL  164 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~---~~fDl  164 (191)
                      ..++.+|||+|||+|..+..++.. .+..+|+++|+++.+++.++++...  ....++.++.+|...++...   ++||.
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r--~g~~~v~~~~~D~~~~~~~~~~~~~fD~  177 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR--AGVSCCELAEEDFLAVSPSDPRYHEVHY  177 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH--TTCCSEEEEECCGGGSCTTCGGGTTEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--cCCCeEEEEeCChHhcCccccccCCCCE
Confidence            457889999999999999998875 3447999999999999999998875  23346889999977664322   57999


Q ss_pred             EEeC
Q 029554          165 AISC  168 (191)
Q Consensus       165 Vis~  168 (191)
                      |++.
T Consensus       178 Vl~D  181 (309)
T 2b9e_A          178 ILLD  181 (309)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9973

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.73  E-value=1.4e-08  Score=79.28  Aligned_cols=80  Identities=10%  Similarity=-0.012  Sum_probs=59.1

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc-----C--CCCceeeEecCCCC-CCCCCCCcce
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH-----N--DNIETCFVVGDEEF-LPLKESSLDL  164 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-----~--~~~~~~~~~~d~~~-l~~~~~~fDl  164 (191)
                      .+|||+|||+|..+..++..+  .+|+++|+++.+.+.+++......     +  ...+++++++|... ++....+||+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g--~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDv  167 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV  167 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred             CEEEEcCCcCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCE
Confidence            799999999999999999887  689999999988666655443210     0  11358899999654 3322247999


Q ss_pred             EEeCCcccCc
Q 029554          165 AISCLGLHWT  174 (191)
Q Consensus       165 Vis~~~l~~~  174 (191)
                      |+++-..++-
T Consensus       168 V~lDP~y~~~  177 (258)
T 2oyr_A          168 VYLDPMFPHK  177 (258)
T ss_dssp             EEECCCCCCC
T ss_pred             EEEcCCCCCc
Confidence            9998777654

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.68  E-value=2.8e-08  Score=81.70  Aligned_cols=97  Identities=9%  Similarity=-0.125  Sum_probs=71.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC-------------CCCceeeEecCCCCCC-
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN-------------DNIETCFVVGDEEFLP-  156 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-------------~~~~~~~~~~d~~~l~-  156 (191)
                      .+.+|||+|||+|..+..++...+..+|+++|+++.+++.++++......             ...++.++.+|+..+. 
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            56789999999999999998875556899999999999999998875200             2234888888865432 


Q ss_pred             CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          157 LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ...+.||+|+..- .   .....++..+.+.|+||
T Consensus       127 ~~~~~fD~I~lDP-~---~~~~~~l~~a~~~lk~g  157 (378)
T 2dul_A          127 ERHRYFHFIDLDP-F---GSPMEFLDTALRSAKRR  157 (378)
T ss_dssp             HSTTCEEEEEECC-S---SCCHHHHHHHHHHEEEE
T ss_pred             hccCCCCEEEeCC-C---CCHHHHHHHHHHhcCCC
Confidence            1135799999642 1   23467788888888764

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.68  E-value=3.6e-07  Score=72.32  Aligned_cols=101  Identities=17%  Similarity=0.212  Sum_probs=77.9

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc---CCCCceeeEecCC-CCCCCCCCCcceEE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH---NDNIETCFVVGDE-EFLPLKESSLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~---~~~~~~~~~~~d~-~~l~~~~~~fDlVi  166 (191)
                      .+.+||-||.|.|...+.+.+..+..++++||+++.+++.+++-+....   ....++.++.+|. ..+.-..++||+||
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi  162 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII  162 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence            4678999999999999999987777899999999999999998765421   1246789999994 45555667899999


Q ss_pred             eCCcccCcC----ChHHHHHHHHhccCCC
Q 029554          167 SCLGLHWTN----DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~~~----d~~~~l~~i~r~Lkpg  191 (191)
                      .-..=....    --..+++.+.++|+||
T Consensus       163 ~D~~dp~~~~~~L~t~eFy~~~~~~L~p~  191 (294)
T 3o4f_A          163 SDCTDPIGPGESLFTSAFYEGCKRCLNPG  191 (294)
T ss_dssp             ESCCCCCCTTCCSSCCHHHHHHHHTEEEE
T ss_pred             EeCCCcCCCchhhcCHHHHHHHHHHhCCC
Confidence            864321111    1246899999999985

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.65  E-value=1.3e-07  Score=77.66  Aligned_cols=83  Identities=16%  Similarity=0.186  Sum_probs=55.2

Q ss_pred             CCeEEEEcCCccHHHHHHhhc-----------------CCCceEEEEECC-----------hhHHHHHHHhhhhccCCCC
Q 029554           92 FPTALCLGGSLEAVRRLLRGR-----------------GGIEKLIMMDTS-----------YDMLKLCKDAQQDAHNDNI  143 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~-----------------~~~~~v~~vD~s-----------~~~l~~a~~~~~~~~~~~~  143 (191)
                      .-+|+|+||++|.++..+...                 .|.-+|+..|..           +.+.+.+++..    ....
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~----g~~~  128 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN----GRKI  128 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT----CCCT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhc----cCCC
Confidence            357999999999998877643                 245689999987           43333332211    1112


Q ss_pred             ceeeEecCCC---CCCCCCCCcceEEeCCcccCcCChH
Q 029554          144 ETCFVVGDEE---FLPLKESSLDLAISCLGLHWTNDLP  178 (191)
Q Consensus       144 ~~~~~~~d~~---~l~~~~~~fDlVis~~~l~~~~d~~  178 (191)
                      +..|+.+.-.   .-.|+++++|+|+|+.+|||+.+.+
T Consensus       129 ~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p  166 (384)
T 2efj_A          129 GSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVP  166 (384)
T ss_dssp             TSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSC
T ss_pred             CceEEEecchhhhhccCCCCceEEEEecceeeecCCCc
Confidence            2355555433   3458899999999999999986543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.64  E-value=8e-08  Score=84.80  Aligned_cols=115  Identities=10%  Similarity=-0.013  Sum_probs=77.0

Q ss_pred             chHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-------------------------------------
Q 029554           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-------------------------------------  113 (191)
Q Consensus        71 ~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-------------------------------------  113 (191)
                      ..++..++..++....  ..++..|||.+||+|.++...+...                                     
T Consensus       172 apl~e~LAa~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~  249 (703)
T 3v97_A          172 APIKETLAAAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRAR  249 (703)
T ss_dssp             CSSCHHHHHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhh
Confidence            4466677777776655  3356789999999999977655321                                     


Q ss_pred             -----CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceEEeC--CcccCcC--ChHHHHH
Q 029554          114 -----GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLAISC--LGLHWTN--DLPGAMI  182 (191)
Q Consensus       114 -----~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlVis~--~~l~~~~--d~~~~l~  182 (191)
                           +..+++|+|+++.+++.|++++.. .+....+.+.++|+..+.  ...++||+|++|  ++...-.  +...+.+
T Consensus       250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~-agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~  328 (703)
T 3v97_A          250 KGLAEYSSHFYGSDSDARVIQRARTNARL-AGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHS  328 (703)
T ss_dssp             HHHHHCCCCEEEEESCHHHHHHHHHHHHH-TTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHH
T ss_pred             hccccCCccEEEEECCHHHHHHHHHHHHH-cCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHH
Confidence                 124799999999999999998865 122335899999987763  333489999999  4433221  3344444


Q ss_pred             HHHhcc
Q 029554          183 QVSIFL  188 (191)
Q Consensus       183 ~i~r~L  188 (191)
                      .+.++|
T Consensus       329 ~l~~~l  334 (703)
T 3v97_A          329 LLGRIM  334 (703)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.64  E-value=4.2e-08  Score=79.86  Aligned_cols=83  Identities=14%  Similarity=0.077  Sum_probs=59.7

Q ss_pred             CeEEEEcCCccHHHHHHhhc----------------CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC---CC
Q 029554           93 PTALCLGGSLEAVRRLLRGR----------------GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD---EE  153 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~----------------~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d---~~  153 (191)
                      -+|+|+||++|.++..+...                .|.-+|+..|........+-+...... ...+..|+.+.   +-
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-DVDGVCFINGVPGSFY  131 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-SCTTCEEEEEEESCSS
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-ccCCCEEEEecchhhh
Confidence            47999999999888766543                356789999999999888876654211 00123444433   33


Q ss_pred             CCCCCCCCcceEEeCCcccCcCC
Q 029554          154 FLPLKESSLDLAISCLGLHWTND  176 (191)
Q Consensus       154 ~l~~~~~~fDlVis~~~l~~~~d  176 (191)
                      .-.|+++++|+|+|+.+|||+.+
T Consensus       132 ~rlfp~~S~d~v~Ss~aLHWls~  154 (359)
T 1m6e_X          132 GRLFPRNTLHFIHSSYSLMWLSQ  154 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSS
T ss_pred             hccCCCCceEEEEehhhhhhccc
Confidence            45688999999999999999854

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.60  E-value=1.1e-07  Score=78.43  Aligned_cols=96  Identities=9%  Similarity=-0.114  Sum_probs=72.1

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCC-c-eeeEecCCCCC-C-CCCCCcce
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI-E-TCFVVGDEEFL-P-LKESSLDL  164 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-~-~~~~~~d~~~l-~-~~~~~fDl  164 (191)
                      .++.+|||++||+|.++..++.... ..+|+++|+++..++.++++++.  +... + +.++.+|+..+ . ...+.||+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~--Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~  128 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKL--NNIPEDRYEIHGMEANFFLRKEWGFGFDY  128 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHH--TTCCGGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH--hCCCCceEEEEeCCHHHHHHHhhCCCCcE
Confidence            3577999999999999998887532 36899999999999999999876  3333 3 88899986432 1 12457999


Q ss_pred             EEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          165 AISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       165 Vis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |+++-    ...+..++..+.+.|+||
T Consensus       129 V~lDP----~g~~~~~l~~a~~~Lk~g  151 (392)
T 3axs_A          129 VDLDP----FGTPVPFIESVALSMKRG  151 (392)
T ss_dssp             EEECC----SSCCHHHHHHHHHHEEEE
T ss_pred             EEECC----CcCHHHHHHHHHHHhCCC
Confidence            99875    123356788888878764

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.58  E-value=2.4e-07  Score=75.37  Aligned_cols=84  Identities=12%  Similarity=-0.016  Sum_probs=62.6

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..++.+|||+||++|.++..+.+++  .+|++||..+ |-....        ...++.+++.|.....++.+.||+|+|-
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg--~~V~aVD~~~-l~~~l~--------~~~~V~~~~~d~~~~~~~~~~~D~vvsD  277 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRN--MWVYSVDNGP-MAQSLM--------DTGQVTWLREDGFKFRPTRSNISWMVCD  277 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTT--CEEEEECSSC-CCHHHH--------TTTCEEEECSCTTTCCCCSSCEEEEEEC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCC--CEEEEEEhhh-cChhhc--------cCCCeEEEeCccccccCCCCCcCEEEEc
Confidence            4578899999999999999999987  8999999875 222211        2345899999987776677889999998


Q ss_pred             CcccCcCChHHHHHHHHhc
Q 029554          169 LGLHWTNDLPGAMIQVSIF  187 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~  187 (191)
                      ++..    +..++.-+.+.
T Consensus       278 m~~~----p~~~~~l~~~w  292 (375)
T 4auk_A          278 MVEK----PAKVAALMAQW  292 (375)
T ss_dssp             CSSC----HHHHHHHHHHH
T ss_pred             CCCC----hHHhHHHHHHH
Confidence            7754    34444444443

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.55  E-value=2.6e-08  Score=77.89  Aligned_cols=80  Identities=8%  Similarity=-0.049  Sum_probs=53.5

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..+..+|||||||+|.+++.++...+...|+|+|++..+...+... .   ....++.....+.+...++..++|+|+|.
T Consensus        88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~---~~g~~ii~~~~~~dv~~l~~~~~DvVLSD  163 (282)
T 3gcz_A           88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-T---TLGWNLIRFKDKTDVFNMEVIPGDTLLCD  163 (282)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-C---BTTGGGEEEECSCCGGGSCCCCCSEEEEC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-c---cCCCceEEeeCCcchhhcCCCCcCEEEec
Confidence            4477799999999999999888766677899999987653222100 0   01123333333333334466889999998


Q ss_pred             Cccc
Q 029554          169 LGLH  172 (191)
Q Consensus       169 ~~l~  172 (191)
                      .+..
T Consensus       164 mApn  167 (282)
T 3gcz_A          164 IGES  167 (282)
T ss_dssp             CCCC
T ss_pred             CccC
Confidence            8877

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.54  E-value=3.8e-07  Score=79.22  Aligned_cols=96  Identities=15%  Similarity=0.031  Sum_probs=65.6

Q ss_pred             CeEEEEcCCccHHHHHHhh---c-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           93 PTALCLGGSLEAVRRLLRG---R-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~---~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..|||+|||+|.+.....+   . +...+|++||.|+ +...+++.... ++-..+++++.+|++++..| .++|+|||-
T Consensus       359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~-N~~~dkVtVI~gd~eev~LP-EKVDIIVSE  435 (637)
T 4gqb_A          359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQF-EEWGSQVTVVSSDMREWVAP-EKADIIVSE  435 (637)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHH-HTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred             cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHh-ccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence            4799999999998444332   2 2223799999997 45556555443 23456799999999988766 679999984


Q ss_pred             Cc--ccCcCChHHHHHHHHhccCCC
Q 029554          169 LG--LHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~--l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ..  +-.-+....++....+.||||
T Consensus       436 wMG~fLl~E~mlevL~Ardr~LKPg  460 (637)
T 4gqb_A          436 LLGSFADNELSPECLDGAQHFLKDD  460 (637)
T ss_dssp             CCBTTBGGGCHHHHHHHHGGGEEEE
T ss_pred             cCcccccccCCHHHHHHHHHhcCCC
Confidence            21  111123456777778888885

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.51  E-value=1.4e-07  Score=80.85  Aligned_cols=111  Identities=7%  Similarity=-0.092  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc----C--------------CCceEEEEECChhHHHHHHHhhhhc
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR----G--------------GIEKLIMMDTSYDMLKLCKDAQQDA  138 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~----~--------------~~~~v~~vD~s~~~l~~a~~~~~~~  138 (191)
                      +...+++.+.  +.++.+|||.|||+|.++..+.+.    .              ...+++|+|+++.++..|+.+... 
T Consensus       157 iv~~mv~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l-  233 (541)
T 2ar0_A          157 LIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL-  233 (541)
T ss_dssp             HHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH-
Confidence            3333444443  345679999999999988766542    1              024799999999999999877643 


Q ss_pred             cCCCCc-----eeeEecCCCCCC-CCCCCcceEEeCCcccCcC-------------C-hHHHHHHHHhccCCC
Q 029554          139 HNDNIE-----TCFVVGDEEFLP-LKESSLDLAISCLGLHWTN-------------D-LPGAMIQVSIFLLPD  191 (191)
Q Consensus       139 ~~~~~~-----~~~~~~d~~~l~-~~~~~fDlVis~~~l~~~~-------------d-~~~~l~~i~r~Lkpg  191 (191)
                       .....     ..+.++|....+ .+.+.||+|++|--+....             + ...++.++.+.|+||
T Consensus       234 -~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g  305 (541)
T 2ar0_A          234 -HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG  305 (541)
T ss_dssp             -TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred             -hCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCC
Confidence             22222     678888865432 3456899999985433211             1 236788888888874

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.48  E-value=4.5e-07  Score=64.21  Aligned_cols=76  Identities=13%  Similarity=0.058  Sum_probs=53.4

Q ss_pred             cCCCeEEEEcCCcc-HHHHHHhh-cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC-CCcceEE
Q 029554           90 KTFPTALCLGGSLE-AVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE-SSLDLAI  166 (191)
Q Consensus        90 ~~~~~VLDlGcG~G-~~~~~l~~-~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~-~~fDlVi  166 (191)
                      .++.+|||||||.| ..+..|++ .+  ..|+++|+++..++                 +++.|+-...+.- +.||+|.
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~g--~~V~atDInp~Av~-----------------~v~dDiF~P~~~~Y~~~DLIY   94 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHSK--VDLVLTDIKPSHGG-----------------IVRDDITSPRMEIYRGAALIY   94 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHSC--CEEEEECSSCSSTT-----------------EECCCSSSCCHHHHTTEEEEE
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhCC--CeEEEEECCccccc-----------------eEEccCCCCcccccCCcCEEE
Confidence            35679999999999 69999986 66  88999999986543                 5667754422111 3799997


Q ss_pred             eCCcccCcCChHHHHHHHHhc
Q 029554          167 SCLGLHWTNDLPGAMIQVSIF  187 (191)
Q Consensus       167 s~~~l~~~~d~~~~l~~i~r~  187 (191)
                      +-   .--.+++..+.++++.
T Consensus        95 si---rPP~El~~~i~~lA~~  112 (153)
T 2k4m_A           95 SI---RPPAEIHSSLMRVADA  112 (153)
T ss_dssp             EE---SCCTTTHHHHHHHHHH
T ss_pred             Ec---CCCHHHHHHHHHHHHH
Confidence            63   3344666666666654

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.45  E-value=1.2e-06  Score=68.95  Aligned_cols=130  Identities=8%  Similarity=-0.010  Sum_probs=75.5

Q ss_pred             CHHHHHHHHHHhh---hhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHH
Q 029554           52 DRHLKRKQRDRAA---WLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDML  128 (191)
Q Consensus        52 d~~~~~~~~~~~a---~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l  128 (191)
                      |+...+....+..   -.|..-..++-.   ++.+. . +..++.+||||||++|.+++.+.+..+...|+++|++..+.
T Consensus        44 dr~~ar~~l~~~~~~~g~yrSRaa~KL~---ei~ek-~-l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~  118 (300)
T 3eld_A           44 DRTAARRYLKEGRTDVGISVSRGAAKIR---WLHER-G-YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGH  118 (300)
T ss_dssp             CCHHHHHHHHHTCSSSCCCSSTTHHHHH---HHHHH-T-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTS
T ss_pred             cHHHHHHHHHcCCccCCCccchHHHHHH---HHHHh-C-CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccc
Confidence            5555555544432   234544443322   44444 3 34578899999999999999999865567899999986532


Q ss_pred             HHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCCh-------HHHHHHHHhccCCC
Q 029554          129 KLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDL-------PGAMIQVSIFLLPD  191 (191)
Q Consensus       129 ~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~-------~~~l~~i~r~Lkpg  191 (191)
                      ..... ..   ....++.....+.+...++++.+|+|+|..+.. ....       ...+.-+.++|+||
T Consensus       119 ~~P~~-~~---~~~~~iv~~~~~~di~~l~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG  183 (300)
T 3eld_A          119 EKPIH-MQ---TLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVN  183 (300)
T ss_dssp             CCCCC-CC---BTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             ccccc-cc---ccCCceEEeecCceeeecCCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            11000 00   001122223333333344567899999988777 4322       12355556788886

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.44  E-value=6.2e-07  Score=70.34  Aligned_cols=84  Identities=19%  Similarity=0.118  Sum_probs=65.9

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-  156 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-  156 (191)
                      ...+++.+.  ..+++.+||.+||.|..+..+.+..  .+|+|+|.++.+++.+++ ..    . .++.++.+++..++ 
T Consensus        11 l~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~~--g~VigiD~Dp~Ai~~A~~-L~----~-~rv~lv~~~f~~l~~   80 (285)
T 1wg8_A           11 YQEALDLLA--VRPGGVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKG-LH----L-PGLTVVQGNFRHLKR   80 (285)
T ss_dssp             HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHH-TC----C-TTEEEEESCGGGHHH
T ss_pred             HHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHCC--CEEEEEeCCHHHHHHHHh-hc----c-CCEEEEECCcchHHH
Confidence            345555555  4578899999999999999998874  799999999999999988 63    2 46899999987653 


Q ss_pred             ----CCCCCcceEEeCCcc
Q 029554          157 ----LKESSLDLAISCLGL  171 (191)
Q Consensus       157 ----~~~~~fDlVis~~~l  171 (191)
                          ...++||.|+...++
T Consensus        81 ~L~~~g~~~vDgIL~DLGv   99 (285)
T 1wg8_A           81 HLAALGVERVDGILADLGV   99 (285)
T ss_dssp             HHHHTTCSCEEEEEEECSC
T ss_pred             HHHHcCCCCcCEEEeCCcc
Confidence                223579999986654

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.43  E-value=5.1e-07  Score=78.81  Aligned_cols=97  Identities=18%  Similarity=0.079  Sum_probs=67.0

Q ss_pred             CCeEEEEcCCccHHHHHHhh----cC---------CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554           92 FPTALCLGGSLEAVRRLLRG----RG---------GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK  158 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~----~~---------~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~  158 (191)
                      ...|||||||+|.+......    .+         ...+|++||.|+......+.+...  +-..++.++.+|++++.++
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~N--g~~d~VtVI~gd~eev~lp  487 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVR--TWKRRVTIIESDMRSLPGI  487 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHH--TTTTCSEEEESCGGGHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhc--CCCCeEEEEeCchhhcccc
Confidence            34799999999999643211    11         224999999999766555544432  3345699999999987653


Q ss_pred             -----CCCcceEEeCCcccCc---CChHHHHHHHHhccCCC
Q 029554          159 -----ESSLDLAISCLGLHWT---NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 -----~~~fDlVis~~~l~~~---~d~~~~l~~i~r~Lkpg  191 (191)
                           .+++|+|||-.. .++   +-.+..|..+.+.||||
T Consensus       488 ~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~  527 (745)
T 3ua3_A          488 AKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPT  527 (745)
T ss_dssp             HHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTT
T ss_pred             cccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCC
Confidence                 578999999543 222   12356788888999986

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.41  E-value=1.2e-05  Score=60.34  Aligned_cols=92  Identities=10%  Similarity=0.005  Sum_probs=66.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCC--CCceeeEecCCCC--------------
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND--NIETCFVVGDEEF--------------  154 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~~~~d~~~--------------  154 (191)
                      ...+|||+|||  +.+..++.. +..+|+.+|.++.+.+.+++.+... +.  ..++.++.+|...              
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~-g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~  105 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAAN-PPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR  105 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHS-CCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred             CCCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCCceEEEEeCchhhhcccccccchhhh
Confidence            45789999985  677777764 2489999999999999999988751 22  4578899888543              


Q ss_pred             -CC--------C-CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          155 -LP--------L-KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 -l~--------~-~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                       ++        . ..++||+|+.-..-     ....+..+.+.|+||
T Consensus       106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-----~~~~~~~~l~~l~~G  147 (202)
T 3cvo_A          106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-----RVGCALATAFSITRP  147 (202)
T ss_dssp             GTTHHHHGGGGCTTCCCCSEEEECSSS-----HHHHHHHHHHHCSSC
T ss_pred             hHHHHhhhhhccccCCCCCEEEEeCCC-----chhHHHHHHHhcCCC
Confidence             22        1 23789999987642     235555666888876

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.29  E-value=5.8e-07  Score=70.05  Aligned_cols=101  Identities=10%  Similarity=-0.045  Sum_probs=65.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhc-------CC-----CceEEEEECCh---hHHH-----------HHHHhhhhcc-----
Q 029554           91 TFPTALCLGGSLEAVRRLLRGR-------GG-----IEKLIMMDTSY---DMLK-----------LCKDAQQDAH-----  139 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~-------~~-----~~~v~~vD~s~---~~l~-----------~a~~~~~~~~-----  139 (191)
                      +..+|||+|+|+|..+..+...       .|     ..+|+++|..+   .++.           .+++....|.     
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4568999999999998776442       44     25899999876   4444           4444433321     


Q ss_pred             -------CCCCceeeEecCCCC-CCCCC----CCcceEEeC-CcccCcCC--hHHHHHHHHhccCCC
Q 029554          140 -------NDNIETCFVVGDEEF-LPLKE----SSLDLAISC-LGLHWTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       140 -------~~~~~~~~~~~d~~~-l~~~~----~~fDlVis~-~~l~~~~d--~~~~l~~i~r~Lkpg  191 (191)
                             ....+++++.+|+.+ ++..+    +.||+|+.. ++-.-.++  ...++.++.++|+||
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pG  206 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPG  206 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCC
Confidence                   122457788888654 44222    279999985 33322223  367899999999986

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.23  E-value=6.9e-06  Score=70.38  Aligned_cols=101  Identities=8%  Similarity=-0.087  Sum_probs=70.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcC---CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC--C-CCCCCcce
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRG---GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL--P-LKESSLDL  164 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l--~-~~~~~fDl  164 (191)
                      ++.+|||.+||+|.+...+.+..   ...+++|+|+++.++..|+.+....+....+..+.++|....  | .+...||+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            56799999999999877665542   247899999999999999877643111114577888996544  3 45678999


Q ss_pred             EEeC--CcccCcC------C---------------hHHHHHHHHhccC-CC
Q 029554          165 AISC--LGLHWTN------D---------------LPGAMIQVSIFLL-PD  191 (191)
Q Consensus       165 Vis~--~~l~~~~------d---------------~~~~l~~i~r~Lk-pg  191 (191)
                      |++|  ++..|-.      |               --.++..+.+.|+ ||
T Consensus       301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~g  351 (542)
T 3lkd_A          301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDN  351 (542)
T ss_dssp             EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTT
T ss_pred             EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCc
Confidence            9998  2222311      1               1237888888998 75

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.13  E-value=4.4e-06  Score=71.64  Aligned_cols=76  Identities=5%  Similarity=-0.209  Sum_probs=53.6

Q ss_pred             CeEEEEcCCccHHHHHHhhcCC---------------CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-C
Q 029554           93 PTALCLGGSLEAVRRLLRGRGG---------------IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-P  156 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~---------------~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~  156 (191)
                      .+|||.+||+|.+...+.....               ..+++|+|+++.++..|+.++.. .+...++.+.++|.... .
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l-~gi~~~i~i~~gDtL~~~~  324 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVI-RGIDFNFGKKNADSFLDDQ  324 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHH-TTCCCBCCSSSCCTTTSCS
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHH-hCCCcccceeccchhcCcc
Confidence            3899999999988776543210               35899999999999999877643 11222344477885443 3


Q ss_pred             CCCCCcceEEeCC
Q 029554          157 LKESSLDLAISCL  169 (191)
Q Consensus       157 ~~~~~fDlVis~~  169 (191)
                      +++..||+|++|-
T Consensus       325 ~~~~~fD~Iv~NP  337 (544)
T 3khk_A          325 HPDLRADFVMTNP  337 (544)
T ss_dssp             CTTCCEEEEEECC
T ss_pred             cccccccEEEECC
Confidence            4567899999973

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.02  E-value=1.4e-05  Score=70.85  Aligned_cols=80  Identities=9%  Similarity=-0.101  Sum_probs=53.3

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCC---CceEEEEECChhHHHHHHHhhhhcc----CCCCceeeEecCCCCC-CCCCCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGG---IEKLIMMDTSYDMLKLCKDAQQDAH----NDNIETCFVVGDEEFL-PLKESSL  162 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~---~~~v~~vD~s~~~l~~a~~~~~~~~----~~~~~~~~~~~d~~~l-~~~~~~f  162 (191)
                      ++.+|||.|||+|.++..++...+   ..+++|+|+++.+++.|+.+.....    .......+...|+... +...+.|
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            467999999999999998877653   3579999999999999943322100    1111224444444432 2345689


Q ss_pred             ceEEeCCc
Q 029554          163 DLAISCLG  170 (191)
Q Consensus       163 DlVis~~~  170 (191)
                      |+||+|--
T Consensus       401 DVVIgNPP  408 (878)
T 3s1s_A          401 SVVVMNPP  408 (878)
T ss_dssp             EEEEECCB
T ss_pred             CEEEECCC
Confidence            99999843

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.01  E-value=1.8e-05  Score=62.68  Aligned_cols=56  Identities=13%  Similarity=0.004  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD  137 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~  137 (191)
                      +...++...   ..++..|||++||+|..+..+...+  .+++|+|+++.+++.+++++..
T Consensus       224 l~~~~i~~~---~~~~~~vlD~f~GsGt~~~~a~~~g--~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          224 LAERLVRMF---SFVGDVVLDPFAGTGTTLIAAARWG--RRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             HHHHHHHHH---CCTTCEEEETTCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHH
Confidence            344444332   3478899999999999999998887  8999999999999999998764

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.95  E-value=2.4e-05  Score=61.65  Aligned_cols=111  Identities=10%  Similarity=-0.050  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-----CCceEEEEECChh--------------------------
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-----GIEKLIMMDTSYD--------------------------  126 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-----~~~~v~~vD~s~~--------------------------  126 (191)
                      ...++..+.. ...++.|||+|+..|..+..++...     +..+++++|..++                          
T Consensus        94 L~~l~~~v~~-~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~  172 (282)
T 2wk1_A           94 IRQCVEDVIG-NNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAV  172 (282)
T ss_dssp             HHHHHHHHHH-TTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCC
T ss_pred             HHHHHHHHHh-cCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchh
Confidence            3344444332 2356799999999999988876432     3578999997532                          


Q ss_pred             HHHHHHHhhhhccCCCCceeeEecCCC-CCC-CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          127 MLKLCKDAQQDAHNDNIETCFVVGDEE-FLP-LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       127 ~l~~a~~~~~~~~~~~~~~~~~~~d~~-~l~-~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .++.+++.+...+-...++.++.+++. .++ +++++||+|..-...+  ......+..+...|+||
T Consensus       173 ~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y--~~~~~~Le~~~p~L~pG  237 (282)
T 2wk1_A          173 SEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY--ESTWDTLTNLYPKVSVG  237 (282)
T ss_dssp             CHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH--HHHHHHHHHHGGGEEEE
T ss_pred             HHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc--ccHHHHHHHHHhhcCCC
Confidence            355667766542111367999999864 344 3457899999876531  12345678888888775

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.90  E-value=0.00016  Score=56.92  Aligned_cols=81  Identities=9%  Similarity=-0.006  Sum_probs=55.5

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHH--HHHhhhhccCCCCceeeEec-CCCCCCCCCCCcceE
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKL--CKDAQQDAHNDNIETCFVVG-DEEFLPLKESSLDLA  165 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~--a~~~~~~~~~~~~~~~~~~~-d~~~l~~~~~~fDlV  165 (191)
                      ..++.+||||||++|.+++..+.......|+++|+...-.+.  ..+.     -.+..+.+... |+..++.  .++|+|
T Consensus        92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~q-----l~w~lV~~~~~~Dv~~l~~--~~~D~i  164 (321)
T 3lkz_A           92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQS-----YGWNIVTMKSGVDVFYRPS--ECCDTL  164 (321)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCB-----TTGGGEEEECSCCTTSSCC--CCCSEE
T ss_pred             CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhh-----cCCcceEEEeccCHhhCCC--CCCCEE
Confidence            357779999999999999988776656789999998762210  0001     12223677776 7777753  569999


Q ss_pred             EeCCcccCcCCh
Q 029554          166 ISCLGLHWTNDL  177 (191)
Q Consensus       166 is~~~l~~~~d~  177 (191)
                      +|-.+ .-.+++
T Consensus       165 vcDig-eSs~~~  175 (321)
T 3lkz_A          165 LCDIG-ESSSSA  175 (321)
T ss_dssp             EECCC-CCCSCH
T ss_pred             EEECc-cCCCCh
Confidence            99877 544443

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.78  E-value=7.3e-05  Score=60.68  Aligned_cols=77  Identities=9%  Similarity=0.050  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHhccc----CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEe
Q 029554           74 VDAVAENLLDRLEDCRK----TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVV  149 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~----~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~  149 (191)
                      ...+.+++++.+.....    ++..|||||.|.|.++..|.+.....+|+++|+++.++...++.. .    ..++.++.
T Consensus        37 d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~----~~~l~ii~  111 (353)
T 1i4w_A           37 NPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E----GSPLQILK  111 (353)
T ss_dssp             CHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T----TSSCEEEC
T ss_pred             CHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c----CCCEEEEE
Confidence            44567777777753221    357899999999999999997633378999999999999887765 2    24688888


Q ss_pred             cCCCCC
Q 029554          150 GDEEFL  155 (191)
Q Consensus       150 ~d~~~l  155 (191)
                      +|+..+
T Consensus       112 ~D~l~~  117 (353)
T 1i4w_A          112 RDPYDW  117 (353)
T ss_dssp             SCTTCH
T ss_pred             CCccch
Confidence            987543

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.78  E-value=3.4e-05  Score=58.83  Aligned_cols=78  Identities=12%  Similarity=-0.033  Sum_probs=55.6

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEec-CCCCCCCCCCCcceEEe
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG-DEEFLPLKESSLDLAIS  167 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-d~~~l~~~~~~fDlVis  167 (191)
                      .+++.+||||||++|.+++..+......+|+++|+-..-.+.-+ ...  ...+..+.|..+ |+..++.  .++|.|+|
T Consensus        76 l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~--s~gwn~v~fk~gvDv~~~~~--~~~Dtllc  150 (267)
T 3p8z_A           76 VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMS--TYGWNIVKLMSGKDVFYLPP--EKCDTLLC  150 (267)
T ss_dssp             SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCC--CTTTTSEEEECSCCGGGCCC--CCCSEEEE
T ss_pred             CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhh--hcCcCceEEEeccceeecCC--ccccEEEE
Confidence            45777999999999999998877666678999999865331100 000  123456888888 8776653  56999999


Q ss_pred             CCcc
Q 029554          168 CLGL  171 (191)
Q Consensus       168 ~~~l  171 (191)
                      -.+-
T Consensus       151 DIge  154 (267)
T 3p8z_A          151 DIGE  154 (267)
T ss_dssp             CCCC
T ss_pred             ecCC
Confidence            8765

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.78  E-value=3.5e-05  Score=62.91  Aligned_cols=102  Identities=16%  Similarity=0.054  Sum_probs=70.8

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC------CCCceeeEecCCC-CC---CCC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN------DNIETCFVVGDEE-FL---PLK  158 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~------~~~~~~~~~~d~~-~l---~~~  158 (191)
                      ..++.+||-||.|.|...+.+.+.. ..++++||+++.+++.|++-+.....      ...++.++..|.. .+   .-.
T Consensus       203 ~~~pkrVLIIGgGdG~~~revlkh~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~  281 (381)
T 3c6k_A          203 DYTGKDVLILGGGDGGILCEIVKLK-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE  281 (381)
T ss_dssp             CCTTCEEEEEECTTCHHHHHHHTTC-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred             cCCCCeEEEECCCcHHHHHHHHhcC-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence            3456799999999999999998754 58999999999999999987643211      1234777888843 22   112


Q ss_pred             CCCcceEEeCCcccCc-CC---------hHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWT-ND---------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~-~d---------~~~~l~~i~r~Lkpg  191 (191)
                      .+.||+||.-..-... .+         ...+++.+.++|+||
T Consensus       282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~  324 (381)
T 3c6k_A          282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQD  324 (381)
T ss_dssp             TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEE
T ss_pred             cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCC
Confidence            4579999986432111 11         135688899999885

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.74  E-value=4.4e-05  Score=58.92  Aligned_cols=101  Identities=11%  Similarity=0.012  Sum_probs=58.8

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCce---eeEec-CCCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET---CFVVG-DEEFL  155 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~---~~~~~-d~~~l  155 (191)
                      ++.++-  +.+++.+|||+||++|.+++..++.-+...|.|.++.... ..  .-..   .....+   .+.++ |+..+
T Consensus        64 EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~--~P~~---~~~~Gv~~i~~~~G~Df~~~  135 (269)
T 2px2_A           64 WLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HE--EPML---MQSYGWNIVTMKSGVDVFYK  135 (269)
T ss_dssp             HHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SC--CCCC---CCSTTGGGEEEECSCCGGGS
T ss_pred             HHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-cc--CCCc---ccCCCceEEEeeccCCccCC
Confidence            455552  4668899999999999999999886223445555555431 00  0000   000122   44446 87664


Q ss_pred             CCCCCCcceEEeCCcccCcC----ChHH---HHHHHHhccCCC
Q 029554          156 PLKESSLDLAISCLGLHWTN----DLPG---AMIQVSIFLLPD  191 (191)
Q Consensus       156 ~~~~~~fDlVis~~~l~~~~----d~~~---~l~~i~r~Lkpg  191 (191)
                        ++.++|+|+|-.+-. ..    |...   +|.-+.++|+||
T Consensus       136 --~~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~g  175 (269)
T 2px2_A          136 --PSEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRG  175 (269)
T ss_dssp             --CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             --CCCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcC
Confidence              345799999977654 32    2222   344455778775

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.74  E-value=2.7e-05  Score=62.53  Aligned_cols=87  Identities=15%  Similarity=0.132  Sum_probs=65.3

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~  156 (191)
                      ..++++.|.  ..+++.++|..||.|..+..+.+. ++..+|+|+|.++.+++.++ ++     ...++.++.+++..+.
T Consensus        46 l~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL-----~~~Rv~lv~~nF~~l~  117 (347)
T 3tka_A           46 LDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI-----DDPRFSIIHGPFSALG  117 (347)
T ss_dssp             THHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC-----CCTTEEEEESCGGGHH
T ss_pred             HHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh-----cCCcEEEEeCCHHHHH
Confidence            344555554  467889999999999999988876 56789999999999999883 43     2346888888877542


Q ss_pred             -----CC-CCCcceEEeCCccc
Q 029554          157 -----LK-ESSLDLAISCLGLH  172 (191)
Q Consensus       157 -----~~-~~~fDlVis~~~l~  172 (191)
                           .. .+++|.|+.++++.
T Consensus       118 ~~L~~~g~~~~vDgILfDLGVS  139 (347)
T 3tka_A          118 EYVAERDLIGKIDGILLDLGVS  139 (347)
T ss_dssp             HHHHHTTCTTCEEEEEEECSCC
T ss_pred             HHHHhcCCCCcccEEEECCccC
Confidence                 11 13699999887764

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.64  E-value=1.2e-05  Score=79.60  Aligned_cols=96  Identities=10%  Similarity=-0.088  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcC---C--CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCCCCCCcce
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRG---G--IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKESSLDL  164 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~---~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~~~~~fDl  164 (191)
                      +..+|||+|.|+|..+..+.+..   +  ..+|+.+|+|+...+.+++++...     .+.....|... .++.+++||+
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~-----di~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL-----HVTQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH-----TEEEECCCSSCCCC-----CCE
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc-----ccccccccccccccCCCCceeE
Confidence            45689999999997765543321   1  358999999999888887776431     12221123322 2345678999


Q ss_pred             EEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          165 AISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       165 Vis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ||++.+||-..++...+.+++++||||
T Consensus      1315 via~~vl~~t~~~~~~l~~~~~lL~p~ 1341 (2512)
T 2vz8_A         1315 LVCNCALATLGDPAVAVGNMAATLKEG 1341 (2512)
T ss_dssp             EEEECC--------------------C
T ss_pred             EEEcccccccccHHHHHHHHHHhcCCC
Confidence            999999998999999999999999996

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.43  E-value=0.00022  Score=57.99  Aligned_cols=79  Identities=14%  Similarity=-0.007  Sum_probs=60.6

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC----CCCceeeEecCCCCCC-CCCCCcc
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN----DNIETCFVVGDEEFLP-LKESSLD  163 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~----~~~~~~~~~~d~~~l~-~~~~~fD  163 (191)
                      ..++.+|||++||+|.=+..++..++...++++|+++.-+...++++.....    ...++.+...|...++ ...+.||
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD  225 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD  225 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence            5688899999999999999888877667899999999988888877754221    1245677777765543 3457899


Q ss_pred             eEEe
Q 029554          164 LAIS  167 (191)
Q Consensus       164 lVis  167 (191)
                      .|++
T Consensus       226 ~VLl  229 (359)
T 4fzv_A          226 RVLV  229 (359)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9995

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.38  E-value=0.00067  Score=57.96  Aligned_cols=90  Identities=7%  Similarity=-0.083  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc----CC---------CceEEEEECChhHHHHHHHhhhhccCCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR----GG---------IEKLIMMDTSYDMLKLCKDAQQDAHNDN  142 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~----~~---------~~~v~~vD~s~~~l~~a~~~~~~~~~~~  142 (191)
                      .+..-+++.+.  +.++.+|+|-+||+|.+.....+.    ..         ...++|+|+++.+...|+-+.--  ...
T Consensus       204 ~Vv~lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~l--hg~  279 (530)
T 3ufb_A          204 PVVRFMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLL--HGL  279 (530)
T ss_dssp             HHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHH--HTC
T ss_pred             HHHHHHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHh--cCC
Confidence            34444444443  456779999999999987655331    11         24699999999999998765432  122


Q ss_pred             CceeeEecCCCCCCC----CCCCcceEEeCC
Q 029554          143 IETCFVVGDEEFLPL----KESSLDLAISCL  169 (191)
Q Consensus       143 ~~~~~~~~d~~~l~~----~~~~fDlVis~~  169 (191)
                      ....+..+|....|.    +...||+|++|-
T Consensus       280 ~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NP  310 (530)
T 3ufb_A          280 EYPRIDPENSLRFPLREMGDKDRVDVILTNP  310 (530)
T ss_dssp             SCCEEECSCTTCSCGGGCCGGGCBSEEEECC
T ss_pred             ccccccccccccCchhhhcccccceEEEecC
Confidence            234566677554332    235799999984

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.13  E-value=0.0011  Score=51.27  Aligned_cols=47  Identities=9%  Similarity=-0.040  Sum_probs=42.1

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD  137 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~  137 (191)
                      ..++..|||..||+|..+......+  .+++|+|+++..++.+++++..
T Consensus       210 ~~~~~~vlD~f~GsGtt~~~a~~~g--r~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          210 SNPNDLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHh
Confidence            4578899999999999999988877  8999999999999999988753

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.70  E-value=0.003  Score=49.73  Aligned_cols=84  Identities=15%  Similarity=0.001  Sum_probs=52.3

Q ss_pred             CCCeEEEEcC------CccHHHHHHhhcCCC-ceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcc
Q 029554           91 TFPTALCLGG------SLEAVRRLLRGRGGI-EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLD  163 (191)
Q Consensus        91 ~~~~VLDlGc------G~G~~~~~l~~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fD  163 (191)
                      .+.+|||+|+      .+|.  ..+.+.+|. ..|+++|+.+-..              ..-.++++|..... ..++||
T Consensus       109 ~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s--------------da~~~IqGD~~~~~-~~~k~D  171 (344)
T 3r24_A          109 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS--------------DADSTLIGDCATVH-TANKWD  171 (344)
T ss_dssp             TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC--------------SSSEEEESCGGGEE-ESSCEE
T ss_pred             CCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc--------------CCCeEEEccccccc-cCCCCC
Confidence            5679999996      6666  344455554 5999999987321              11255889965543 247899


Q ss_pred             eEEeCCcccCc-----C-----Ch-HHHHHHHHhccCCC
Q 029554          164 LAISCLGLHWT-----N-----DL-PGAMIQVSIFLLPD  191 (191)
Q Consensus       164 lVis~~~l~~~-----~-----d~-~~~l~~i~r~Lkpg  191 (191)
                      +|+|-++-.-.     +     .+ +.++.=+.++|+||
T Consensus       172 LVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpG  210 (344)
T 3r24_A          172 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALG  210 (344)
T ss_dssp             EEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEE
T ss_pred             EEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCC
Confidence            99996543221     1     12 23445556678775

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.04  E-value=0.05  Score=43.60  Aligned_cols=98  Identities=11%  Similarity=-0.029  Sum_probs=65.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc-------C------------CCCceeeEec
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH-------N------------DNIETCFVVG  150 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-------~------------~~~~~~~~~~  150 (191)
                      .+...|+.+|||.......|...++...++-+|. |.+++.-++.+....       .            ...+..++..
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~  174 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  174 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence            3567899999999998888876554567778887 777766655554310       0            1245778888


Q ss_pred             CCCCCC--------C-CCCCcceEEeCCcccCcC--ChHHHHHHHHhcc
Q 029554          151 DEEFLP--------L-KESSLDLAISCLGLHWTN--DLPGAMIQVSIFL  188 (191)
Q Consensus       151 d~~~l~--------~-~~~~fDlVis~~~l~~~~--d~~~~l~~i~r~L  188 (191)
                      |+....        . ..+.-.++++-.+|.|++  ....+++.+.+..
T Consensus       175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~  223 (334)
T 1rjd_A          175 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF  223 (334)
T ss_dssp             CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC
T ss_pred             CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC
Confidence            876521        1 234568889999999995  3345666666544

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=95.90  E-value=0.069  Score=43.68  Aligned_cols=62  Identities=2%  Similarity=-0.165  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHhcccC-CCeEEEEcCCccHHHHHHhhc-------CCCceEEEEECChhHHHHHHHhh
Q 029554           74 VDAVAENLLDRLEDCRKT-FPTALCLGGSLEAVRRLLRGR-------GGIEKLIMMDTSYDMLKLCKDAQ  135 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~~-~~~VLDlGcG~G~~~~~l~~~-------~~~~~v~~vD~s~~~l~~a~~~~  135 (191)
                      -+.++..+...+.....+ .-.|+|+|+|.|.++..+.+.       ....+|+.||+|+...+.-++.+
T Consensus        62 Ge~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L  131 (387)
T 1zkd_A           62 GELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL  131 (387)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence            334455555544432333 236999999999998776532       12358999999998877555544

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=95.65  E-value=0.035  Score=45.28  Aligned_cols=72  Identities=10%  Similarity=0.027  Sum_probs=53.5

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC--------CCCCcce
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL--------KESSLDL  164 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~--------~~~~fDl  164 (191)
                      -++||+-||.|.++.-+...+ ...+.++|+++..++..+.+...       ..++++|+..+..        ..+.+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG-~~~v~avE~d~~a~~t~~~N~~~-------~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG-FDVKMAVEIDQHAINTHAINFPR-------SLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT-CEEEEEECSCHHHHHHHHHHCTT-------SEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CeEEEEccCcCHHHHHHHHCC-CcEEEEEeCCHHHHHHHHHhCCC-------CceEecChhhcCHHHHHhhcccCCCeeE
Confidence            369999999999999888776 45677999999988877766532       5566777765531        3467999


Q ss_pred             EEeCCccc
Q 029554          165 AISCLGLH  172 (191)
Q Consensus       165 Vis~~~l~  172 (191)
                      |+...-.+
T Consensus        75 i~ggpPCQ   82 (376)
T 3g7u_A           75 IIGGPPCQ   82 (376)
T ss_dssp             EEECCCCC
T ss_pred             EEecCCCC
Confidence            99765443

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.62  E-value=0.036  Score=45.64  Aligned_cols=48  Identities=15%  Similarity=0.111  Sum_probs=40.1

Q ss_pred             cCCCeEEEEcCCccHHHHHHh-hcCC-CceEEEEECChhHHHHHHHhhhh
Q 029554           90 KTFPTALCLGGSLEAVRRLLR-GRGG-IEKLIMMDTSYDMLKLCKDAQQD  137 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~-~~~~-~~~v~~vD~s~~~l~~a~~~~~~  137 (191)
                      .++..|+|+||+.|..+..++ ..++ ..+|+++|+++...+..+++...
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            467799999999999998877 4443 37999999999999999887754

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=95.61  E-value=0.013  Score=47.24  Aligned_cols=72  Identities=14%  Similarity=0.059  Sum_probs=53.0

Q ss_pred             CeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---CCCCCcceEEeC
Q 029554           93 PTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---LKESSLDLAISC  168 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---~~~~~fDlVis~  168 (191)
                      .+|||+-||.|.++..+...+- ...+.++|+++..++..+.++..       ..++.+|+..+.   ++...+|+|+..
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-------~~~~~~Di~~~~~~~~~~~~~D~l~~g   75 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-------TQLLAKTIEGITLEEFDRLSFDMILMS   75 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-------SCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc-------cccccCCHHHccHhHcCcCCcCEEEEc
Confidence            4699999999999998887652 35799999999999888877642       345677776653   111258999986


Q ss_pred             Ccc
Q 029554          169 LGL  171 (191)
Q Consensus       169 ~~l  171 (191)
                      .-.
T Consensus        76 pPC   78 (343)
T 1g55_A           76 PPC   78 (343)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            543

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=95.16  E-value=0.74  Score=36.33  Aligned_cols=97  Identities=10%  Similarity=-0.035  Sum_probs=64.8

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC-CCCceeeEecCCCCCC---------CCCCC
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN-DNIETCFVVGDEEFLP---------LKESS  161 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~~~~d~~~l~---------~~~~~  161 (191)
                      ...||+||||.-.....+.. .....++-+| -|..++..++.+..... ...+..++..|+.. .         +....
T Consensus       103 ~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~  179 (310)
T 2uyo_A          103 IRQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSA  179 (310)
T ss_dssp             CCEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTS
T ss_pred             CCeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCC
Confidence            35799999998777666652 2236899999 58888887777753111 24457788888764 2         22223


Q ss_pred             cceEEeCCcccCcCC--hHHHHHHHHhccCCC
Q 029554          162 LDLAISCLGLHWTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       162 fDlVis~~~l~~~~d--~~~~l~~i~r~Lkpg  191 (191)
                      -=++++-.+++|+++  ...+++.+...+.||
T Consensus       180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~g  211 (310)
T 2uyo_A          180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVG  211 (310)
T ss_dssp             CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTT
T ss_pred             CEEEEEechHhhCCHHHHHHHHHHHHHhCCCC
Confidence            346777888999864  456788887776664

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.06  E-value=0.086  Score=42.12  Aligned_cols=73  Identities=8%  Similarity=0.010  Sum_probs=52.9

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCC-CceE-EEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---CCCCCcceEE
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGG-IEKL-IMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---LKESSLDLAI  166 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~-~~~v-~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---~~~~~fDlVi  166 (191)
                      ..+++|+-||.|.+..-+...+- ...+ .++|+++...+..+.++..       . ++..|+..+.   ++...+|+++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-------~-~~~~DI~~~~~~~i~~~~~Dil~   81 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-------E-VQVKNLDSISIKQIESLNCNTWF   81 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-------C-CBCCCTTTCCHHHHHHTCCCEEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-------C-cccCChhhcCHHHhccCCCCEEE
Confidence            45899999999999999987652 3556 7999999988888777632       1 4567777654   2223689999


Q ss_pred             eCCccc
Q 029554          167 SCLGLH  172 (191)
Q Consensus       167 s~~~l~  172 (191)
                      ...-.+
T Consensus        82 ggpPCQ   87 (327)
T 3qv2_A           82 MSPPCQ   87 (327)
T ss_dssp             ECCCCT
T ss_pred             ecCCcc
Confidence            765444

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.77  E-value=0.068  Score=42.50  Aligned_cols=47  Identities=9%  Similarity=-0.005  Sum_probs=42.0

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD  137 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~  137 (191)
                      ..++..|||.=||+|..+......+  .+++|+|+++..++.+++++..
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~~g--r~~ig~e~~~~~~~~~~~r~~~  296 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAERES--RKWISFEMKPEYVAASAFRFLD  296 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHGGGSC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence            4578899999999999998888877  8999999999999999988753

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=93.70  E-value=0.23  Score=39.59  Aligned_cols=68  Identities=15%  Similarity=0.001  Sum_probs=49.1

Q ss_pred             CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC-CCCcceEEeCC
Q 029554           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK-ESSLDLAISCL  169 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~-~~~fDlVis~~  169 (191)
                      ..++||+-||.|.++..+...+ ...+.++|+++..++..+.+...   .      ..+|+..+... -..+|+|+...
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG-~~~v~~~e~d~~a~~t~~~N~~~---~------~~~Di~~~~~~~~~~~D~l~~gp   79 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGE---K------PEGDITQVNEKTIPDHDILCAGF   79 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHHSC---C------CBSCGGGSCGGGSCCCSEEEEEC
T ss_pred             CCcEEEECCCcCHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHcCC---C------CcCCHHHcCHhhCCCCCEEEECC
Confidence            3589999999999999988776 56788999999998888877642   1      14565443211 12489999754

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=93.66  E-value=0.12  Score=41.34  Aligned_cols=71  Identities=14%  Similarity=0.072  Sum_probs=50.8

Q ss_pred             eEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---CCCCCcceEEeCC
Q 029554           94 TALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---LKESSLDLAISCL  169 (191)
Q Consensus        94 ~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---~~~~~fDlVis~~  169 (191)
                      +++|+-||.|.+..-+...+- ...+.++|+++...+..+.++..       ..+...|+..+.   ++...+|+++...
T Consensus         5 ~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~-------~~~~~~DI~~~~~~~~~~~~~D~l~ggp   77 (333)
T 4h0n_A            5 KILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE-------TNLLNRNIQQLTPQVIKKWNVDTILMSP   77 (333)
T ss_dssp             EEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-------SCEECCCGGGCCHHHHHHTTCCEEEECC
T ss_pred             EEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC-------CceeccccccCCHHHhccCCCCEEEecC
Confidence            699999999999998877652 35688999999988887776532       345566766553   2223689998654


Q ss_pred             cc
Q 029554          170 GL  171 (191)
Q Consensus       170 ~l  171 (191)
                      -.
T Consensus        78 PC   79 (333)
T 4h0n_A           78 PC   79 (333)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=93.65  E-value=0.2  Score=40.80  Aligned_cols=94  Identities=16%  Similarity=0.064  Sum_probs=56.0

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-C------CCCC
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-P------LKES  160 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~------~~~~  160 (191)
                      ..++.+||-+|||. |..+..+++.....+|+++|.++..++.+++.      .   ...+....+.. .      ....
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l------G---a~~i~~~~~~~~~~~~~~~~~g~  253 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA------G---FETIDLRNSAPLRDQIDQILGKP  253 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT------T---CEEEETTSSSCHHHHHHHHHSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc------C---CcEEcCCCcchHHHHHHHHhCCC
Confidence            45788999999976 77777776643234899999999988877532      1   11221111111 0      0123


Q ss_pred             CcceEEeCCcccCc--------CChHHHHHHHHhccCCC
Q 029554          161 SLDLAISCLGLHWT--------NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       161 ~fDlVis~~~l~~~--------~d~~~~l~~i~r~Lkpg  191 (191)
                      .||+|+-+..-...        .+....+.+..++|+|+
T Consensus       254 g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  292 (398)
T 2dph_A          254 EVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAG  292 (398)
T ss_dssp             CEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEE
T ss_pred             CCCEEEECCCCccccccccccccccHHHHHHHHHHHhcC
Confidence            69999976653321        02334677777777653

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=93.56  E-value=0.3  Score=40.44  Aligned_cols=59  Identities=12%  Similarity=0.155  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc----CC-CceEEEEECChhHHHHHHHhhh
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR----GG-IEKLIMMDTSYDMLKLCKDAQQ  136 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~----~~-~~~v~~vD~s~~~l~~a~~~~~  136 (191)
                      .++..+...+...  ....|+|+|+|.|.+...+.+.    .+ ..+|+.||+|+.+.+.-++++.
T Consensus       124 ~la~~~~~~~~~~--g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  187 (432)
T 4f3n_A          124 TLARPVAQALDAS--GTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG  187 (432)
T ss_dssp             HHHHHHHHHHHHH--TCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc--CCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence            3455555444432  1468999999999988776532    11 2489999999998777666654

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=93.51  E-value=0.15  Score=40.53  Aligned_cols=57  Identities=23%  Similarity=0.153  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECCh---hHHHHHHHhhhh
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY---DMLKLCKDAQQD  137 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~---~~l~~a~~~~~~  137 (191)
                      .+..+++...   ..++..|||.=||+|..+......+  .+++|+|+++   ..++.+++++..
T Consensus       230 ~l~~~~i~~~---~~~~~~vlDpF~GsGtt~~aa~~~~--r~~ig~e~~~~~~~~~~~~~~Rl~~  289 (319)
T 1eg2_A          230 AVIERLVRAL---SHPGSTVLDFFAGSGVTARVAIQEG--RNSICTDAAPVFKEYYQKQLTFLQD  289 (319)
T ss_dssp             HHHHHHHHHH---SCTTCEEEETTCTTCHHHHHHHHHT--CEEEEEESSTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHh---CCCCCEEEecCCCCCHHHHHHHHcC--CcEEEEECCccHHHHHHHHHHHHHH
Confidence            3444555332   4578899999999999998888877  8999999999   999999888753

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=93.38  E-value=0.25  Score=39.10  Aligned_cols=101  Identities=8%  Similarity=0.032  Sum_probs=54.9

Q ss_pred             CCCeEEEEcCCccHHHHHH----hhcCCCc--eEEEEECCh------------hHHHHHHHhhhhccCCCCceeeEecCC
Q 029554           91 TFPTALCLGGSLEAVRRLL----RGRGGIE--KLIMMDTSY------------DMLKLCKDAQQDAHNDNIETCFVVGDE  152 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l----~~~~~~~--~v~~vD~s~------------~~l~~a~~~~~~~~~~~~~~~~~~~d~  152 (191)
                      ..-+|||+|-|+|.+....    .+..|..  +++.+|..+            ...+...+.............+..+|+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            4457999999999875322    2223333  456666421            111111122111112223456677885


Q ss_pred             C-CCC-CCCCCcceEEeCC-cccCcCCh--HHHHHHHHhccCCC
Q 029554          153 E-FLP-LKESSLDLAISCL-GLHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       153 ~-~l~-~~~~~fDlVis~~-~l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      . .++ ++...||+|+--. +-.--+++  ..+++++.++++||
T Consensus       176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pg  219 (308)
T 3vyw_A          176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEK  219 (308)
T ss_dssp             HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEE
T ss_pred             HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCC
Confidence            4 233 3445799998642 22222232  57899999999885

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=93.17  E-value=0.093  Score=41.03  Aligned_cols=90  Identities=7%  Similarity=-0.086  Sum_probs=63.5

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-CCC---CCCCCcceEE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP---LKESSLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~l~---~~~~~fDlVi  166 (191)
                      .+..+||+=+|+|.++..+.+.+  .+++.+|.++..++..++++..    ..++.++..|.. .+.   .+...||+|+
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~--d~~vfvE~~~~a~~~L~~Nl~~----~~~~~V~~~D~~~~L~~l~~~~~~fdLVf  164 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQ--DRLYLCELHPTEYNFLLKLPHF----NKKVYVNHTDGVSKLNALLPPPEKRGLIF  164 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTT--SEEEEECCSHHHHHHHTTSCCT----TSCEEEECSCHHHHHHHHCSCTTSCEEEE
T ss_pred             cCCCceeEeCCcHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHhCc----CCcEEEEeCcHHHHHHHhcCCCCCccEEE
Confidence            35568999999999999888855  8999999999999988887742    356888888843 221   2345799999


Q ss_pred             eCCcccCcCChHHHHHHHHh
Q 029554          167 SCLGLHWTNDLPGAMIQVSI  186 (191)
Q Consensus       167 s~~~l~~~~d~~~~l~~i~r  186 (191)
                      +-=-...-++...++..+.+
T Consensus       165 iDPPYe~k~~~~~vl~~L~~  184 (283)
T 2oo3_A          165 IDPSYERKEEYKEIPYAIKN  184 (283)
T ss_dssp             ECCCCCSTTHHHHHHHHHHH
T ss_pred             ECCCCCCCcHHHHHHHHHHH
Confidence            85443322344555554443

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=92.93  E-value=0.26  Score=39.57  Aligned_cols=88  Identities=16%  Similarity=0.137  Sum_probs=52.9

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC----C-CCCCCCc
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----L-PLKESSL  162 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~----l-~~~~~~f  162 (191)
                      ..++.+||-+|+|. |.....+++.....+|+++|.++.-++.+++...        ..++....+.    + ....+.+
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa--------~~vi~~~~~~~~~~~~~~~~gg~  259 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA--------THVINSKTQDPVAAIKEITDGGV  259 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC--------SEEEETTTSCHHHHHHHHTTSCE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC--------CEEecCCccCHHHHHHHhcCCCC
Confidence            34778999999875 6666666654323479999999998888865321        1111111111    0 0112369


Q ss_pred             ceEEeCCcccCcCChHHHHHHHHhccCC
Q 029554          163 DLAISCLGLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       163 DlVis~~~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                      |+|+-+..-      ...+.+..++|+|
T Consensus       260 D~vid~~g~------~~~~~~~~~~l~~  281 (371)
T 1f8f_A          260 NFALESTGS------PEILKQGVDALGI  281 (371)
T ss_dssp             EEEEECSCC------HHHHHHHHHTEEE
T ss_pred             cEEEECCCC------HHHHHHHHHHHhc
Confidence            999876541      3456666666665

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=92.92  E-value=0.66  Score=37.58  Aligned_cols=94  Identities=13%  Similarity=0.005  Sum_probs=57.6

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-----C-C-CCCC
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-----L-P-LKES  160 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-----l-~-~~~~  160 (191)
                      ..++.+||-+|+|. |..+..+++......|+++|.++.-++.+++..      .   ..+....+.     + . ....
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lG------a---~~i~~~~~~~~~~~v~~~t~g~  253 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG------F---EIADLSLDTPLHEQIAALLGEP  253 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT------C---EEEETTSSSCHHHHHHHHHSSS
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcC------C---cEEccCCcchHHHHHHHHhCCC
Confidence            45788999999865 667777766543347999999999888885421      1   112111111     0 0 1123


Q ss_pred             CcceEEeCCccc---------CcCChHHHHHHHHhccCCC
Q 029554          161 SLDLAISCLGLH---------WTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       161 ~fDlVis~~~l~---------~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .+|+|+-+.+-.         |..++...+.+..++|+++
T Consensus       254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  293 (398)
T 1kol_A          254 EVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA  293 (398)
T ss_dssp             CEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE
T ss_pred             CCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcC
Confidence            699999765532         2334556777777777653

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=91.83  E-value=1.3  Score=35.46  Aligned_cols=46  Identities=20%  Similarity=0.229  Sum_probs=34.4

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHh
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA  134 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~  134 (191)
                      ..++.+||-+|+|. |..+..+++.....+|+++|.++.-++.+++.
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  226 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV  226 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            45788999999864 66666666654344899999999988877653

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=91.54  E-value=0.48  Score=37.18  Aligned_cols=74  Identities=18%  Similarity=0.136  Sum_probs=50.9

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCce-EEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC---C-CCCcc
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEK-LIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL---K-ESSLD  163 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~---~-~~~fD  163 (191)
                      .....+++|+=||.|.+...+...+-... +.++|+++...+..+.+...       ..+..+|+..+..   + .+.+|
T Consensus        13 ~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~-------~~~~~~DI~~i~~~~i~~~~~~D   85 (295)
T 2qrv_A           13 KRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQG-------KIMYVGDVRSVTQKHIQEWGPFD   85 (295)
T ss_dssp             CCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTT-------CEEEECCGGGCCHHHHHHTCCCS
T ss_pred             cCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCC-------CceeCCChHHccHHHhcccCCcC
Confidence            33455899999999999988887761122 69999999888776655421       3456677665531   1 14689


Q ss_pred             eEEeCC
Q 029554          164 LAISCL  169 (191)
Q Consensus       164 lVis~~  169 (191)
                      +|+...
T Consensus        86 ll~ggp   91 (295)
T 2qrv_A           86 LVIGGS   91 (295)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            998754

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=91.07  E-value=0.56  Score=35.98  Aligned_cols=80  Identities=21%  Similarity=0.182  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+..+|=-|++.|   .....|++.+  ++|+.+|.+++.++...+....   ...++..+..|+....          -
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~G--a~Vvi~~~~~~~~~~~~~~l~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAG--ARVILNDIRATLLAESVDTLTR---KGYDAHGVAFDVTDELAIEAAFSKLDA   82 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT--CEEEECCSCHHHHHHHHHHHHH---TTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            4567777787766   3455666777  8999999999888877766654   3445777778865421          1


Q ss_pred             CCCCcceEEeCCcccCcC
Q 029554          158 KESSLDLAISCLGLHWTN  175 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~  175 (191)
                      .-+..|++|.|.++.+..
T Consensus        83 ~~G~iDiLVNNAG~~~~~  100 (255)
T 4g81_D           83 EGIHVDILINNAGIQYRK  100 (255)
T ss_dssp             TTCCCCEEEECCCCCCCC
T ss_pred             HCCCCcEEEECCCCCCCC
Confidence            236799999998876543

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=90.47  E-value=0.86  Score=32.85  Aligned_cols=86  Identities=12%  Similarity=0.061  Sum_probs=48.5

Q ss_pred             cCCCeEEEEcC--CccHHHHHHh-hcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC---C-C-CCCCC
Q 029554           90 KTFPTALCLGG--SLEAVRRLLR-GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF---L-P-LKESS  161 (191)
Q Consensus        90 ~~~~~VLDlGc--G~G~~~~~l~-~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~---l-~-~~~~~  161 (191)
                      .++.+||..|+  |.|.....+. ..+  .+|+++|.+++.++.+++.      .. ...+...+.+.   + . ...+.
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~~~------g~-~~~~d~~~~~~~~~~~~~~~~~~  107 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSRL------GV-EYVGDSRSVDFADEILELTDGYG  107 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHTT------CC-SEEEETTCSTHHHHHHHHTTTCC
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc------CC-CEEeeCCcHHHHHHHHHHhCCCC
Confidence            46788999995  3455544443 345  6899999998877666431      11 11111111110   0 0 12246


Q ss_pred             cceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          162 LDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       162 fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +|+|+.+.+       ...+.+..++|+|+
T Consensus       108 ~D~vi~~~g-------~~~~~~~~~~l~~~  130 (198)
T 1pqw_A          108 VDVVLNSLA-------GEAIQRGVQILAPG  130 (198)
T ss_dssp             EEEEEECCC-------THHHHHHHHTEEEE
T ss_pred             CeEEEECCc-------hHHHHHHHHHhccC
Confidence            999998754       23566677777653

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=90.34  E-value=1.3  Score=35.17  Aligned_cols=46  Identities=9%  Similarity=-0.016  Sum_probs=34.5

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHh
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA  134 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~  134 (191)
                      ..++.+||-+|+|. |..+..+++.....+|+++|.++.-++.+++.
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l  210 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY  210 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh
Confidence            45788999999875 66666666654334899999999888877654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=90.17  E-value=3.4  Score=32.82  Aligned_cols=90  Identities=14%  Similarity=0.112  Sum_probs=54.1

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC-C--CCC------CCC
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD-E--EFL------PLK  158 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d-~--~~l------~~~  158 (191)
                      ..++.+||-+|+|. |..+..+++......|+++|.++.-++.+++....       +.....+ .  +.+      -..
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~-------~~~~~~~~~~~~~~~~~v~~~t~  249 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPE-------VVTHKVERLSAEESAKKIVESFG  249 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTT-------CEEEECCSCCHHHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchh-------cccccccccchHHHHHHHHHHhC
Confidence            45788999999864 66666666654334599999999988888764211       1111111 0  000      012


Q ss_pred             CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ...+|+|+-+.+      -...+....++|+|+
T Consensus       250 g~g~Dvvid~~g------~~~~~~~~~~~l~~~  276 (363)
T 3m6i_A          250 GIEPAVALECTG------VESSIAAAIWAVKFG  276 (363)
T ss_dssp             SCCCSEEEECSC------CHHHHHHHHHHSCTT
T ss_pred             CCCCCEEEECCC------ChHHHHHHHHHhcCC
Confidence            346999987544      134566777777764

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=90.04  E-value=2.3  Score=32.35  Aligned_cols=77  Identities=14%  Similarity=0.103  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----CCCCCc
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKESSL  162 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~~~~~f  162 (191)
                      .+..+|=-|++.|   .....|++.+  .+|+.+|.+..  +...+....   ...+...+..|+....     +..+..
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~G--a~Vvi~~r~~~--~~~~~~~~~---~g~~~~~~~~Dv~d~~~v~~~~~~g~i   80 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAG--AEVVCAARRAP--DETLDIIAK---DGGNASALLIDFADPLAAKDSFTDAGF   80 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCC--HHHHHHHHH---TTCCEEEEECCTTSTTTTTTSSTTTCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcC--CEEEEEeCCcH--HHHHHHHHH---hCCcEEEEEccCCCHHHHHHHHHhCCC
Confidence            4566777777766   3455667777  89999998753  222222222   2334677777754321     445789


Q ss_pred             ceEEeCCcccCc
Q 029554          163 DLAISCLGLHWT  174 (191)
Q Consensus       163 DlVis~~~l~~~  174 (191)
                      |++|.|.++...
T Consensus        81 DiLVNNAGi~~~   92 (247)
T 4hp8_A           81 DILVNNAGIIRR   92 (247)
T ss_dssp             CEEEECCCCCCC
T ss_pred             CEEEECCCCCCC
Confidence            999999887654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=90.00  E-value=1.4  Score=29.82  Aligned_cols=68  Identities=18%  Similarity=0.192  Sum_probs=42.0

Q ss_pred             CCeEEEEcCCc-c-HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----CCCCCcceE
Q 029554           92 FPTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKESSLDLA  165 (191)
Q Consensus        92 ~~~VLDlGcG~-G-~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----~~~~~fDlV  165 (191)
                      ..+|+=+|||. | .+...|.+.+  .+|+++|.++..++.+++..         ..++.+|.....    ..-..+|+|
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g--~~V~~id~~~~~~~~~~~~~---------~~~~~gd~~~~~~l~~~~~~~~d~v   74 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAG--KKVLAVDKSKEKIELLEDEG---------FDAVIADPTDESFYRSLDLEGVSAV   74 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCHHHHHHHHHTT---------CEEEECCTTCHHHHHHSCCTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHCC---------CcEEECCCCCHHHHHhCCcccCCEE
Confidence            35688999864 1 2233444445  78999999998777665421         455667754321    122468988


Q ss_pred             EeCCc
Q 029554          166 ISCLG  170 (191)
Q Consensus       166 is~~~  170 (191)
                      +....
T Consensus        75 i~~~~   79 (141)
T 3llv_A           75 LITGS   79 (141)
T ss_dssp             EECCS
T ss_pred             EEecC
Confidence            87544

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=89.85  E-value=0.9  Score=34.24  Aligned_cols=81  Identities=15%  Similarity=0.148  Sum_probs=53.4

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----  157 (191)
                      .+.++|=.|++.|   .+...|++.+  .+|+.++.++.-++...+..........++.++..|+....     +     
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDG--YRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ   83 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHT--CEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence            4567888887665   3455566666  79999999998777766655431112245778888876432     0     


Q ss_pred             CCCCcceEEeCCcccC
Q 029554          158 KESSLDLAISCLGLHW  173 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~  173 (191)
                      .-+..|++|.|.++..
T Consensus        84 ~~g~iD~lvnnAg~~~   99 (250)
T 3nyw_A           84 KYGAVDILVNAAAMFM   99 (250)
T ss_dssp             HHCCEEEEEECCCCCC
T ss_pred             hcCCCCEEEECCCcCC
Confidence            0147999999987643

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=89.38  E-value=1.1  Score=31.92  Aligned_cols=34  Identities=12%  Similarity=0.008  Sum_probs=30.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTS  124 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s  124 (191)
                      ..+-|||+|-|+|..--+|.+..|...++++|-.
T Consensus        40 ~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~   73 (174)
T 3iht_A           40 LSGPVYELGLGNGRTYHHLRQHVQGREIYVFERA   73 (174)
T ss_dssp             CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESS
T ss_pred             CCCceEEecCCCChhHHHHHHhCCCCcEEEEEee
Confidence            4556999999999999999999999999999954

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=89.31  E-value=1.3  Score=33.81  Aligned_cols=77  Identities=13%  Similarity=0.051  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+..+|=-|++.|   .....|++.+  ++|+.+|.+++-++...+....   ...++.++..|+....          -
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~G--a~Vv~~~~~~~~~~~~~~~i~~---~g~~~~~~~~Dvt~~~~v~~~~~~~~~   80 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALND--SIVVAVELLEDRLNQIVQELRG---MGKEVLGVKADVSKKKDVEEFVRRTFE   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4667888888776   3455666767  8999999999988887777654   3456788888876432          0


Q ss_pred             CCCCcceEEeCCccc
Q 029554          158 KESSLDLAISCLGLH  172 (191)
Q Consensus       158 ~~~~fDlVis~~~l~  172 (191)
                      .-+..|++|.|.++.
T Consensus        81 ~~G~iDiLVNNAGi~   95 (254)
T 4fn4_A           81 TYSRIDVLCNNAGIM   95 (254)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HcCCCCEEEECCccc
Confidence            116799999998754

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=89.08  E-value=1.5  Score=32.96  Aligned_cols=78  Identities=12%  Similarity=0.036  Sum_probs=53.8

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C----C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----K  158 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----~  158 (191)
                      .+.+||=.|++.|   .+...|++.+  .+|+.+|.++..++...+....   ...++.++..|+....     +    .
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEG--FTVFAGRRNGEKLAPLVAEIEA---AGGRIVARSLDARNEDEVTAFLNAADA   80 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTT--CEEEEEESSGGGGHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEECcCCCHHHHHHHHHHHHh
Confidence            4567888887765   3455556666  8999999999887777666543   2446788888876432     0    0


Q ss_pred             CCCcceEEeCCcccC
Q 029554          159 ESSLDLAISCLGLHW  173 (191)
Q Consensus       159 ~~~fDlVis~~~l~~  173 (191)
                      .+..|++|.|.++..
T Consensus        81 ~g~id~lv~nAg~~~   95 (252)
T 3h7a_A           81 HAPLEVTIFNVGANV   95 (252)
T ss_dssp             HSCEEEEEECCCCCC
T ss_pred             hCCceEEEECCCcCC
Confidence            157899999988654

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=89.06  E-value=1.3  Score=35.42  Aligned_cols=90  Identities=17%  Similarity=0.187  Sum_probs=53.2

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC-CCC-----CCCCCC
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFL-----PLKESS  161 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~-~~l-----~~~~~~  161 (191)
                      ..++.+||-+|+|. |..+..+++.....+|+++|.++.-++.+++..      ...+ +...+. +.+     ....+.
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lG------a~~v-i~~~~~~~~~~~~~~~~~~~g  262 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFG------ATDF-VNPNDHSEPISQVLSKMTNGG  262 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT------CCEE-ECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhC------CceE-EeccccchhHHHHHHHHhCCC
Confidence            34678999999864 566666665443348999999999888876421      1101 111110 010     011236


Q ss_pred             cceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          162 LDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       162 fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +|+|+-+..-      ...+....++|+|+
T Consensus       263 ~D~vid~~g~------~~~~~~~~~~l~~~  286 (374)
T 1cdo_A          263 VDFSLECVGN------VGVMRNALESCLKG  286 (374)
T ss_dssp             BSEEEECSCC------HHHHHHHHHTBCTT
T ss_pred             CCEEEECCCC------HHHHHHHHHHhhcC
Confidence            9999876442      34567777888774

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=88.95  E-value=4  Score=33.05  Aligned_cols=46  Identities=20%  Similarity=0.204  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHh
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA  134 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~  134 (191)
                      ..++.+||=+|+|. |..+..+++.....+|+++|.++.-++.+++.
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l  257 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL  257 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            34678999999864 55555666554344899999999988888654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=88.88  E-value=2.2  Score=32.46  Aligned_cols=80  Identities=19%  Similarity=0.120  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECC------------hhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTS------------YDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s------------~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l  155 (191)
                      .+.+||=.|++.|   .+...|++.+  .+|+.+|.+            +..++...+....   ...++.++..|+...
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~   86 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADG--ADIIAVDLCDQIASVPYPLATPEELAATVKLVED---IGSRIVARQADVRDR   86 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHH---HTCCEEEEECCTTCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC--CeEEEEecccccccccccccchHHHHHHHHHHHh---cCCeEEEEeCCCCCH
Confidence            4567888887655   3455566666  899999987            5545444443332   234578888887643


Q ss_pred             C-----CC-----CCCcceEEeCCcccCcC
Q 029554          156 P-----LK-----ESSLDLAISCLGLHWTN  175 (191)
Q Consensus       156 ~-----~~-----~~~fDlVis~~~l~~~~  175 (191)
                      .     +.     -+..|++|.|.++....
T Consensus        87 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~  116 (278)
T 3sx2_A           87 ESLSAALQAGLDELGRLDIVVANAGIAPMS  116 (278)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEECCCCCCCS
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCC
Confidence            2     00     14689999998876543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=88.55  E-value=0.69  Score=40.45  Aligned_cols=101  Identities=13%  Similarity=-0.052  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcC------------CCceEEEEEC---ChhHHHHHHHh-----------hhhccC----
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRG------------GIEKLIMMDT---SYDMLKLCKDA-----------QQDAHN----  140 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~------------~~~~v~~vD~---s~~~l~~a~~~-----------~~~~~~----  140 (191)
                      ..-+|+|+|.|+|.+.....+..            ...+++.+|.   +...+..+-+.           ...|..    
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            44589999999998866554321            1257999998   44444433222           111211    


Q ss_pred             --------CCCceeeEecCCC-CCC-CC---CCCcceEEeCC-cccCcCC--hHHHHHHHHhccCCC
Q 029554          141 --------DNIETCFVVGDEE-FLP-LK---ESSLDLAISCL-GLHWTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       141 --------~~~~~~~~~~d~~-~l~-~~---~~~fDlVis~~-~l~~~~d--~~~~l~~i~r~Lkpg  191 (191)
                              ....+++..+|+. .++ +.   .+.+|.++.-. +-..-++  ...++.++.++++||
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g  204 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPG  204 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEE
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCC
Confidence                    1124556667753 232 11   46799998733 1111112  257888888888764

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=88.54  E-value=1  Score=35.76  Aligned_cols=69  Identities=13%  Similarity=-0.056  Sum_probs=45.0

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEe
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAIS  167 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis  167 (191)
                      ..++.+||-+|+|. |.....+++.. ..+|+++|.++.-++.+++..      ..  .++ .+.+.+  .. .+|+|+-
T Consensus       174 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lG------a~--~v~-~~~~~~--~~-~~D~vid  240 (348)
T 3two_A          174 VTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMG------VK--HFY-TDPKQC--KE-ELDFIIS  240 (348)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTT------CS--EEE-SSGGGC--CS-CEEEEEE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcC------CC--eec-CCHHHH--hc-CCCEEEE
Confidence            45788999999875 66666666543 268999999999888886532      11  112 333322  22 6999987


Q ss_pred             CCc
Q 029554          168 CLG  170 (191)
Q Consensus       168 ~~~  170 (191)
                      +.+
T Consensus       241 ~~g  243 (348)
T 3two_A          241 TIP  243 (348)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            544

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=88.48  E-value=2.5  Score=33.75  Aligned_cols=89  Identities=13%  Similarity=0.094  Sum_probs=52.6

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEe-cCC-CCC-----CCCCC
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVV-GDE-EFL-----PLKES  160 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~d~-~~l-----~~~~~  160 (191)
                      ..++.+||-+|+|. |.....+++.....+|+++|.++.-++.+++..      ..  .++. .+. +.+     ....+
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lG------a~--~vi~~~~~~~~~~~~~~~~~~~  260 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG------AT--ECVNPQDYKKPIQEVLTEMSNG  260 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT------CS--EEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhC------Cc--eEecccccchhHHHHHHHHhCC
Confidence            34678999999864 566666665443348999999999888875421      11  1111 110 100     01124


Q ss_pred             CcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          161 SLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       161 ~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .+|+|+-+..-      ...+....++|+++
T Consensus       261 g~D~vid~~g~------~~~~~~~~~~l~~~  285 (374)
T 2jhf_A          261 GVDFSFEVIGR------LDTMVTALSCCQEA  285 (374)
T ss_dssp             CBSEEEECSCC------HHHHHHHHHHBCTT
T ss_pred             CCcEEEECCCC------HHHHHHHHHHhhcC
Confidence            69999876442      34566777777764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=88.35  E-value=2.1  Score=34.21  Aligned_cols=90  Identities=14%  Similarity=0.103  Sum_probs=52.9

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC-CCC-----CCCCCC
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFL-----PLKESS  161 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~-~~l-----~~~~~~  161 (191)
                      ..++.+||-+|+|. |..+..+++.....+|+++|.++.-++.+++..      .. ..+...+. +.+     ....+.
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG------a~-~vi~~~~~~~~~~~~i~~~t~gg  261 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELG------AT-ECLNPKDYDKPIYEVICEKTNGG  261 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTT------CS-EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcC------Cc-EEEecccccchHHHHHHHHhCCC
Confidence            34778999999864 555666655432348999999999888876422      11 11111110 000     011247


Q ss_pred             cceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          162 LDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       162 fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +|+|+-+.+-      ...+.+..++|+|+
T Consensus       262 ~Dvvid~~g~------~~~~~~~~~~l~~~  285 (373)
T 1p0f_A          262 VDYAVECAGR------IETMMNALQSTYCG  285 (373)
T ss_dssp             BSEEEECSCC------HHHHHHHHHTBCTT
T ss_pred             CCEEEECCCC------HHHHHHHHHHHhcC
Confidence            9999875432      34567777788764

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=88.23  E-value=4.8  Score=31.76  Aligned_cols=88  Identities=16%  Similarity=0.095  Sum_probs=52.2

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC-CCCC------CC--
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFLP------LK--  158 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~-~~l~------~~--  158 (191)
                      ..++.+||-+|+|. |..+..+++... .+|+++|.++.-++.+++..      ..  .++..+. +.+.      ..  
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~lG------a~--~~~~~~~~~~~~~~i~~~~~~~  236 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCG------AD--VTLVVDPAKEEESSIIERIRSA  236 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTT------CS--EEEECCTTTSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhC------CC--EEEcCcccccHHHHHHHHhccc
Confidence            45788999999864 566666655432 56999999998888876422      11  1111110 1110      01  


Q ss_pred             -CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          159 -ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 -~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                       ...+|+|+.+..-      ...+....++|+|+
T Consensus       237 ~g~g~D~vid~~g~------~~~~~~~~~~l~~~  264 (352)
T 1e3j_A          237 IGDLPNVTIDCSGN------EKCITIGINITRTG  264 (352)
T ss_dssp             SSSCCSEEEECSCC------HHHHHHHHHHSCTT
T ss_pred             cCCCCCEEEECCCC------HHHHHHHHHHHhcC
Confidence             2469999876542      33566677777764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=88.23  E-value=2.8  Score=31.51  Aligned_cols=79  Identities=19%  Similarity=0.093  Sum_probs=53.3

Q ss_pred             CCCeEEEEcC-Ccc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C----
Q 029554           91 TFPTALCLGG-SLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----  157 (191)
Q Consensus        91 ~~~~VLDlGc-G~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----  157 (191)
                      .+.+||=.|+ |.|   .+...|.+.+  .+|+.+|.++.-++...+....  ....++.++..|+....     +    
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dl~~~~~v~~~~~~~~   96 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEG--ADVVISDYHERRLGETRDQLAD--LGLGRVEAVVCDVTSTEAVDALITQTV   96 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHT--TCSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCC--CEEEEecCCHHHHHHHHHHHHh--cCCCceEEEEeCCCCHHHHHHHHHHHH
Confidence            3457888887 444   3455666766  8899999999877776666543  23346888888876432     0    


Q ss_pred             -CCCCcceEEeCCcccC
Q 029554          158 -KESSLDLAISCLGLHW  173 (191)
Q Consensus       158 -~~~~fDlVis~~~l~~  173 (191)
                       .-+..|++|.+.++..
T Consensus        97 ~~~g~id~li~~Ag~~~  113 (266)
T 3o38_A           97 EKAGRLDVLVNNAGLGG  113 (266)
T ss_dssp             HHHSCCCEEEECCCCCC
T ss_pred             HHhCCCcEEEECCCcCC
Confidence             0146899999987644

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=88.08  E-value=1.7  Score=34.78  Aligned_cols=90  Identities=12%  Similarity=0.137  Sum_probs=53.0

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC-CCC-----CCCCCC
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFL-----PLKESS  161 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~-~~l-----~~~~~~  161 (191)
                      ..++.+||-+|+|. |..+..+++.....+|+++|.++.-++.+++...      . ..+...+. +.+     ....+.
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa------~-~vi~~~~~~~~~~~~v~~~~~~g  265 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA------T-DCLNPRELDKPVQDVITELTAGG  265 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC------S-EEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC------c-EEEccccccchHHHHHHHHhCCC
Confidence            34678999999863 5666666655433489999999998888764321      1 11111110 000     011236


Q ss_pred             cceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          162 LDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       162 fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +|+|+-+..-      ...+.+..++|+++
T Consensus       266 ~Dvvid~~G~------~~~~~~~~~~l~~~  289 (376)
T 1e3i_A          266 VDYSLDCAGT------AQTLKAAVDCTVLG  289 (376)
T ss_dssp             BSEEEESSCC------HHHHHHHHHTBCTT
T ss_pred             ccEEEECCCC------HHHHHHHHHHhhcC
Confidence            9999865442      34567777888764

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=88.05  E-value=3.8  Score=30.08  Aligned_cols=78  Identities=22%  Similarity=0.235  Sum_probs=50.1

Q ss_pred             CeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----CCC-----
Q 029554           93 PTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKE-----  159 (191)
Q Consensus        93 ~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~~~-----  159 (191)
                      .+||=.|++.|   .+...|.+.+  .+|+.++.++.-++...+....  ....++.++..|+....     +..     
T Consensus         3 k~vlITGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (235)
T 3l77_A            3 KVAVITGASRGIGEAIARALARDG--YALALGARSVDRLEKIAHELMQ--EQGVEVFYHHLDVSKAESVEEFSKKVLERF   78 (235)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH--HHCCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh--hcCCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence            46777786554   3344555666  7899999998877666554432  12345778888876421     111     


Q ss_pred             CCcceEEeCCcccCc
Q 029554          160 SSLDLAISCLGLHWT  174 (191)
Q Consensus       160 ~~fDlVis~~~l~~~  174 (191)
                      +..|++|.+.++.+.
T Consensus        79 g~id~li~~Ag~~~~   93 (235)
T 3l77_A           79 GDVDVVVANAGLGYF   93 (235)
T ss_dssp             SSCSEEEECCCCCCC
T ss_pred             CCCCEEEECCccccc
Confidence            468999999887544

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=88.01  E-value=2.4  Score=33.81  Aligned_cols=90  Identities=13%  Similarity=0.119  Sum_probs=52.7

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC-CCC-----CCCCCC
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFL-----PLKESS  161 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~-~~l-----~~~~~~  161 (191)
                      ..++.+||-+|+|. |..+..+++.....+|+++|.++.-++.+++...      . ..+...+. +.+     ....+.
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa------~-~vi~~~~~~~~~~~~v~~~~~~g  260 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA------T-ECINPQDFSKPIQEVLIEMTDGG  260 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC------S-EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC------c-eEeccccccccHHHHHHHHhCCC
Confidence            34678999999864 5555556554323389999999998888864321      1 00111110 000     011246


Q ss_pred             cceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          162 LDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       162 fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +|+|+-+..-      ...+.+..++|+|+
T Consensus       261 ~D~vid~~g~------~~~~~~~~~~l~~~  284 (373)
T 2fzw_A          261 VDYSFECIGN------VKVMRAALEACHKG  284 (373)
T ss_dssp             BSEEEECSCC------HHHHHHHHHTBCTT
T ss_pred             CCEEEECCCc------HHHHHHHHHhhccC
Confidence            9999876442      34567777888764

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=87.95  E-value=2  Score=33.26  Aligned_cols=78  Identities=21%  Similarity=0.242  Sum_probs=53.8

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----  157 (191)
                      .+.+||=.|++.|   .+...|.+.+  .+|+.++.++.-++...+.+..   ...++.++..|+....     +     
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~  104 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRG--ARLVLSDVDQPALEQAVNGLRG---QGFDAHGVVCDVRHLDEMVRLADEAFR  104 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4567888887765   3445556666  8899999999887777666543   3445788888876532     0     


Q ss_pred             CCCCcceEEeCCcccC
Q 029554          158 KESSLDLAISCLGLHW  173 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~  173 (191)
                      ..+..|++|.|.++..
T Consensus       105 ~~g~id~lvnnAg~~~  120 (301)
T 3tjr_A          105 LLGGVDVVFSNAGIVV  120 (301)
T ss_dssp             HHSSCSEEEECCCCCC
T ss_pred             hCCCCCEEEECCCcCC
Confidence            0146899999987654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=87.92  E-value=5.6  Score=29.12  Aligned_cols=76  Identities=17%  Similarity=0.127  Sum_probs=47.0

Q ss_pred             CCCeEEEEcCCccHHHHH----HhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCce-eeEecCCC-CCCCCCCCcce
Q 029554           91 TFPTALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET-CFVVGDEE-FLPLKESSLDL  164 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~----l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~-~~~~~d~~-~l~~~~~~fDl  164 (191)
                      .+.+||=.|+ +|.++..    |.+.+  .+|++++-++.-++.....         .+ .++.+|+. .+.-.-+..|.
T Consensus        20 ~~~~ilVtGa-tG~iG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~---------~~~~~~~~Dl~~~~~~~~~~~D~   87 (236)
T 3e8x_A           20 QGMRVLVVGA-NGKVARYLLSELKNKG--HEPVAMVRNEEQGPELRER---------GASDIVVANLEEDFSHAFASIDA   87 (236)
T ss_dssp             -CCEEEEETT-TSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHT---------TCSEEEECCTTSCCGGGGTTCSE
T ss_pred             CCCeEEEECC-CChHHHHHHHHHHhCC--CeEEEEECChHHHHHHHhC---------CCceEEEcccHHHHHHHHcCCCE
Confidence            3567888885 4544444    44555  7999999998765544321         26 77888875 22211246899


Q ss_pred             EEeCCcccCcCChH
Q 029554          165 AISCLGLHWTNDLP  178 (191)
Q Consensus       165 Vis~~~l~~~~d~~  178 (191)
                      ||.+.+.....+..
T Consensus        88 vi~~ag~~~~~~~~  101 (236)
T 3e8x_A           88 VVFAAGSGPHTGAD  101 (236)
T ss_dssp             EEECCCCCTTSCHH
T ss_pred             EEECCCCCCCCCcc
Confidence            99988765444433

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=87.76  E-value=3.1  Score=31.70  Aligned_cols=79  Identities=16%  Similarity=0.111  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----  157 (191)
                      .+.+||=.|++.|   .+...|++.+  .+|+.+|.++.-++...+..........++.++..|+....     +     
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   87 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAG--ASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA   87 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4567888887655   3445556666  89999999998777766655431112236788888876432     0     


Q ss_pred             CCCCcceEEeCCcc
Q 029554          158 KESSLDLAISCLGL  171 (191)
Q Consensus       158 ~~~~fDlVis~~~l  171 (191)
                      ..+..|++|.|.+.
T Consensus        88 ~~g~id~lv~nAg~  101 (281)
T 3svt_A           88 WHGRLHGVVHCAGG  101 (281)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCc
Confidence            01468999998876

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=87.74  E-value=1.7  Score=32.43  Aligned_cols=76  Identities=12%  Similarity=0.070  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----  157 (191)
                      .+.+||=.|++.|   .+...|.+.+  .+|+.+|.++..++...+....   ...++.++..|+....     +     
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREG--AAVVVADINAEAAEAVAKQIVA---DGGTAISVAVDVSDPESAKAMADRTLA   82 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4567888887655   3455556666  8899999999887777666543   3445778888876432     0     


Q ss_pred             CCCCcceEEeCCcc
Q 029554          158 KESSLDLAISCLGL  171 (191)
Q Consensus       158 ~~~~fDlVis~~~l  171 (191)
                      .-+..|++|.+.++
T Consensus        83 ~~g~id~li~~Ag~   96 (253)
T 3qiv_A           83 EFGGIDYLVNNAAI   96 (253)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCc
Confidence            01368999998876

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=87.57  E-value=0.8  Score=35.22  Aligned_cols=100  Identities=13%  Similarity=0.116  Sum_probs=59.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhc-------CCCceEEEEECChhHHH------------------------HHHH-----
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGR-------GGIEKLIMMDTSYDMLK------------------------LCKD-----  133 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~-------~~~~~v~~vD~s~~~l~------------------------~a~~-----  133 (191)
                      .-++.|+|+|+-.|.....++..       ++..+|+++|.-+++-+                        ..++     
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            45668999999999888776531       35689999993332221                        1111     


Q ss_pred             -hhhhccCCCCceeeEecCCC-CCC-----CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          134 -AQQDAHNDNIETCFVVGDEE-FLP-----LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       134 -~~~~~~~~~~~~~~~~~d~~-~l~-----~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                       +....+....++.++.+++. .+|     .+..+||+|..-.-++  ......+..+...|+||
T Consensus       148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y--~~t~~~le~~~p~l~~G  210 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY--EPTKAVLEAIRPYLTKG  210 (257)
T ss_dssp             HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH--HHHHHHHHHHGGGEEEE
T ss_pred             hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc--chHHHHHHHHHHHhCCC
Confidence             11111112367899999865 333     2445799999876431  12234566666666664

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=87.56  E-value=1.1  Score=33.78  Aligned_cols=78  Identities=10%  Similarity=0.039  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----CC----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK----  158 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~~----  158 (191)
                      .+.++|=.|++.|   .+...|++.+  .+|+.+|.++.-++...+....   ...++.++..|+....     +.    
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~   85 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAG--ASVVVTDLKSEGAEAVAAAIRQ---AGGKAIGLECNVTDEQHREAVIKAALD   85 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            4557787887655   3344556666  8899999998877776665543   3345778888876432     00    


Q ss_pred             -CCCcceEEeCCcccC
Q 029554          159 -ESSLDLAISCLGLHW  173 (191)
Q Consensus       159 -~~~fDlVis~~~l~~  173 (191)
                       -+..|++|.|.+...
T Consensus        86 ~~g~id~lv~nAg~~~  101 (256)
T 3gaf_A           86 QFGKITVLVNNAGGGG  101 (256)
T ss_dssp             HHSCCCEEEECCCCCC
T ss_pred             HcCCCCEEEECCCCCC
Confidence             146899999887654

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=87.40  E-value=2  Score=32.92  Aligned_cols=78  Identities=14%  Similarity=0.151  Sum_probs=52.0

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-C----C-----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-P----L-----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~----~-----  157 (191)
                      .+.+||=.|++.|   .+...|++.+  .+|++++.++.-.+.+.+.+..  ....++.++..|+... .    +     
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G--~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dl~~~~~~v~~~~~~~~   86 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNG--IMVVLTCRDVTKGHEAVEKLKN--SNHENVVFHQLDVTDPIATMSSLADFIK   86 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHT--TTCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh--cCCCceEEEEccCCCcHHHHHHHHHHHH
Confidence            3456787787655   3344555666  7999999998877666665543  2234688888887654 2    0     


Q ss_pred             -CCCCcceEEeCCccc
Q 029554          158 -KESSLDLAISCLGLH  172 (191)
Q Consensus       158 -~~~~fDlVis~~~l~  172 (191)
                       ..+..|++|.|.++.
T Consensus        87 ~~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           87 THFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHHSSCCEEEECCCCC
T ss_pred             HhCCCCCEEEECCccc
Confidence             014799999998865

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=87.39  E-value=2.1  Score=32.73  Aligned_cols=78  Identities=17%  Similarity=0.086  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC---------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL---------K  158 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~---------~  158 (191)
                      .+.++|=.|++.|   .+...|++.+  .+|+.+|.++..++...+....   ...++.++..|+....-         .
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~~  106 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAG--AHVILHGVKPGSTAAVQQRIIA---SGGTAQELAGDLSEAGAGTDLIERAEA  106 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSTTTTHHHHHHHHH---TTCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHh---cCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence            4567887786655   3344556666  8999999998877666655543   33457788888765420         0


Q ss_pred             CCCcceEEeCCcccC
Q 029554          159 ESSLDLAISCLGLHW  173 (191)
Q Consensus       159 ~~~fDlVis~~~l~~  173 (191)
                      .+..|++|.|.+...
T Consensus       107 ~g~iD~lvnnAg~~~  121 (275)
T 4imr_A          107 IAPVDILVINASAQI  121 (275)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             hCCCCEEEECCCCCC
Confidence            157899999987643

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=87.31  E-value=2.7  Score=31.77  Aligned_cols=76  Identities=14%  Similarity=0.051  Sum_probs=52.4

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----  157 (191)
                      .+.++|=.|++.|   .+...|++.+  .+|+.+|.++..++...+....   ...++.++..|+....     +     
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQG--ADLVLAARTVERLEDVAKQVTD---TGRRALSVGTDITDDAQVAHLVDETMK   84 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCc--CEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4567888887665   3455666666  8899999999877777665543   3445788888876432     0     


Q ss_pred             CCCCcceEEeCCcc
Q 029554          158 KESSLDLAISCLGL  171 (191)
Q Consensus       158 ~~~~fDlVis~~~l  171 (191)
                      .-+..|++|.|.+.
T Consensus        85 ~~g~id~lv~nAg~   98 (264)
T 3ucx_A           85 AYGRVDVVINNAFR   98 (264)
T ss_dssp             HTSCCSEEEECCCS
T ss_pred             HcCCCcEEEECCCC
Confidence            11478999998755

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=87.18  E-value=2.9  Score=31.05  Aligned_cols=77  Identities=16%  Similarity=0.179  Sum_probs=51.4

Q ss_pred             CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CC
Q 029554           92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LK  158 (191)
Q Consensus        92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~  158 (191)
                      +.+||=.|++.|   .+...|.+.+  .+|+.++.++..++...+....   ...++.++..|+....          -.
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKG--ATVVGTATSQASAEKFENSMKE---KGFKARGLVLNISDIESIQNFFAEIKAE   79 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            456777776554   3445556666  8999999999877776665543   2345778888876421          11


Q ss_pred             CCCcceEEeCCcccC
Q 029554          159 ESSLDLAISCLGLHW  173 (191)
Q Consensus       159 ~~~fDlVis~~~l~~  173 (191)
                      .+..|++|.+.++..
T Consensus        80 ~~~id~li~~Ag~~~   94 (247)
T 3lyl_A           80 NLAIDILVNNAGITR   94 (247)
T ss_dssp             TCCCSEEEECCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            246899999887653

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=87.08  E-value=1.9  Score=34.55  Aligned_cols=88  Identities=14%  Similarity=0.106  Sum_probs=53.1

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC--CCCC-----CCCCC
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD--EEFL-----PLKES  160 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d--~~~l-----~~~~~  160 (191)
                      ..++.+||-+|+|. |..+..+++.....+|+++|.++.-++.+++...      .  .++...  .+.+     ...++
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa------~--~vi~~~~~~~~~~~~i~~~~~g  262 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGV------N--EFVNPKDHDKPIQEVIVDLTDG  262 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTC------C--EEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC------c--EEEccccCchhHHHHHHHhcCC
Confidence            34678999999863 6666666654333489999999998888764321      1  111111  0110     01224


Q ss_pred             CcceEEeCCcccCcCChHHHHHHHHhccCC
Q 029554          161 SLDLAISCLGLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       161 ~fDlVis~~~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                      .+|+|+-+..      -...+....++|+|
T Consensus       263 g~D~vid~~g------~~~~~~~~~~~l~~  286 (378)
T 3uko_A          263 GVDYSFECIG------NVSVMRAALECCHK  286 (378)
T ss_dssp             CBSEEEECSC------CHHHHHHHHHTBCT
T ss_pred             CCCEEEECCC------CHHHHHHHHHHhhc
Confidence            7999987644      13466777778876

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=87.03  E-value=3.8  Score=31.40  Aligned_cols=77  Identities=17%  Similarity=0.138  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----  157 (191)
                      .+.+||=.|++.|   .+...|++.+  .+|+.+|.++..++...+....   ...++.++..|+....     +     
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~  101 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADG--VTVGALGRTRTEVEEVADEIVG---AGGQAIALEADVSDELQMRNAVRDLVL  101 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHTT---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4567888887665   3344556666  8999999998877776665532   3445778888876431     0     


Q ss_pred             CCCCcceEEeCCccc
Q 029554          158 KESSLDLAISCLGLH  172 (191)
Q Consensus       158 ~~~~fDlVis~~~l~  172 (191)
                      .-+..|++|.|.++.
T Consensus       102 ~~g~iD~lVnnAg~~  116 (283)
T 3v8b_A          102 KFGHLDIVVANAGIN  116 (283)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HhCCCCEEEECCCCC
Confidence            014799999988764

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=86.85  E-value=1.5  Score=36.83  Aligned_cols=57  Identities=12%  Similarity=0.007  Sum_probs=41.0

Q ss_pred             CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      -+++|+=||.|.+..-+...+ ...+.++|+++...+.-+.++.    ......++..|+..
T Consensus        89 ~~viDLFaG~GGlslG~~~aG-~~~v~avE~d~~A~~ty~~N~~----~~p~~~~~~~DI~~  145 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIG-GQCVFTSEWNKHAVRTYKANHY----CDPATHHFNEDIRD  145 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTT-EEEEEEECCCHHHHHHHHHHSC----CCTTTCEEESCTHH
T ss_pred             ceEEEecCCccHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHhcc----cCCCcceeccchhh
Confidence            479999999999999998765 4568999999988777766541    11224455566543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=86.78  E-value=2.1  Score=29.05  Aligned_cols=67  Identities=15%  Similarity=0.103  Sum_probs=42.5

Q ss_pred             CCeEEEEcCCc-c-HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----CCCCCcceE
Q 029554           92 FPTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKESSLDLA  165 (191)
Q Consensus        92 ~~~VLDlGcG~-G-~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----~~~~~fDlV  165 (191)
                      ..+|+=+|||. | .+...|.+.+  .+|+++|.+++.++.+++.         .+.++.+|.....    ..-..+|+|
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g--~~v~vid~~~~~~~~~~~~---------g~~~i~gd~~~~~~l~~a~i~~ad~v   75 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASD--IPLVVIETSRTRVDELRER---------GVRAVLGNAANEEIMQLAHLECAKWL   75 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTT--CCEEEEESCHHHHHHHHHT---------TCEEEESCTTSHHHHHHTTGGGCSEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHc---------CCCEEECCCCCHHHHHhcCcccCCEE
Confidence            34788899864 3 2234444555  7899999999988777542         1556777754321    112468888


Q ss_pred             EeCC
Q 029554          166 ISCL  169 (191)
Q Consensus       166 is~~  169 (191)
                      ++..
T Consensus        76 i~~~   79 (140)
T 3fwz_A           76 ILTI   79 (140)
T ss_dssp             EECC
T ss_pred             EEEC
Confidence            8753

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=86.73  E-value=2.8  Score=31.60  Aligned_cols=76  Identities=16%  Similarity=0.155  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----  157 (191)
                      .+.+||=.|++.|   .+...|++.+  .+|+.++.++.-++...+....   ...++.++..|+....     +     
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~  102 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLG--ARVVLTARDVEKLRAVEREIVA---AGGEAESHACDLSHSDAIAAFATGVLA  102 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHH---hCCceeEEEecCCCHHHHHHHHHHHHH
Confidence            4557888886554   3344455556  7899999999877776665543   3345778888876432     0     


Q ss_pred             CCCCcceEEeCCcc
Q 029554          158 KESSLDLAISCLGL  171 (191)
Q Consensus       158 ~~~~fDlVis~~~l  171 (191)
                      ..+..|+||.+.++
T Consensus       103 ~~g~id~lv~~Ag~  116 (262)
T 3rkr_A          103 AHGRCDVLVNNAGV  116 (262)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             hcCCCCEEEECCCc
Confidence            01468999998876

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=86.34  E-value=3.2  Score=32.76  Aligned_cols=43  Identities=16%  Similarity=0.087  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554           91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (191)
Q Consensus        91 ~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~  133 (191)
                      ++.+||-+|+|. |.....+++.....+|+++|.++.-++.+++
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~  210 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK  210 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            778999999853 5555555554322389999999988877764

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=86.20  E-value=1.5  Score=34.42  Aligned_cols=86  Identities=15%  Similarity=0.056  Sum_probs=49.4

Q ss_pred             ccCCCeEEEEcC--CccHHHHHHhh-cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-----CCCCC
Q 029554           89 RKTFPTALCLGG--SLEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-----PLKES  160 (191)
Q Consensus        89 ~~~~~~VLDlGc--G~G~~~~~l~~-~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-----~~~~~  160 (191)
                      ..++.+||-.||  |.|.....++. .+  .+|+++|.++..++.+++ ..    .  ...+-..+.+.+     ....+
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~~-~g----~--~~~~d~~~~~~~~~~~~~~~~~  213 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLKQ-IG----F--DAAFNYKTVNSLEEALKKASPD  213 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH-TT----C--SEEEETTSCSCHHHHHHHHCTT
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHh-cC----C--cEEEecCCHHHHHHHHHHHhCC
Confidence            346789999998  45555544444 44  689999999988777733 21    1  111111110111     01125


Q ss_pred             CcceEEeCCcccCcCChHHHHHHHHhccCC
Q 029554          161 SLDLAISCLGLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       161 ~fDlVis~~~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                      .+|+|+.+.+-       ..+.+..++|+|
T Consensus       214 ~~d~vi~~~g~-------~~~~~~~~~l~~  236 (333)
T 1v3u_A          214 GYDCYFDNVGG-------EFLNTVLSQMKD  236 (333)
T ss_dssp             CEEEEEESSCH-------HHHHHHHTTEEE
T ss_pred             CCeEEEECCCh-------HHHHHHHHHHhc
Confidence            79999987662       245666666665

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=86.19  E-value=4.6  Score=30.76  Aligned_cols=78  Identities=17%  Similarity=0.121  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECC----------------hhHHHHHHHhhhhccCCCCceeeEecC
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTS----------------YDMLKLCKDAQQDAHNDNIETCFVVGD  151 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s----------------~~~l~~a~~~~~~~~~~~~~~~~~~~d  151 (191)
                      .+.++|=.|++.|   .+...|++.+  .+|+.+|.+                ++.++...+....   ...++.++..|
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D   84 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEG--ADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKG---HNRRIVTAEVD   84 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHT---TTCCEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCC--CeEEEEeccccccccccccccccCCHHHHHHHHHHHhh---cCCceEEEEcC
Confidence            4567888888766   3455566666  899999987                4444444443332   34467888888


Q ss_pred             CCCCC-----C-----CCCCcceEEeCCcccC
Q 029554          152 EEFLP-----L-----KESSLDLAISCLGLHW  173 (191)
Q Consensus       152 ~~~l~-----~-----~~~~fDlVis~~~l~~  173 (191)
                      +....     +     .-+..|++|.|.++..
T Consensus        85 v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~  116 (286)
T 3uve_A           85 VRDYDALKAAVDSGVEQLGRLDIIVANAGIGN  116 (286)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEEEECCcccC
Confidence            76421     0     0146899999987643

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=86.05  E-value=2.7  Score=32.91  Aligned_cols=67  Identities=10%  Similarity=0.054  Sum_probs=49.0

Q ss_pred             eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC-CCCcceEEeCC
Q 029554           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK-ESSLDLAISCL  169 (191)
Q Consensus        94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~-~~~fDlVis~~  169 (191)
                      +|||+=||-|.+..-+.+.+ ..-+.++|+++...+.-+.+..        ..++.+|+..+... -..+|+|+...
T Consensus         2 kvidLFsG~GG~~~G~~~aG-~~~v~a~e~d~~a~~ty~~N~~--------~~~~~~DI~~i~~~~~~~~D~l~ggp   69 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAG-FRIICANEYDKSIWKTYESNHS--------AKLIKGDISKISSDEFPKCDGIIGGP   69 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTT-CEEEEEEECCTTTHHHHHHHCC--------SEEEESCGGGCCGGGSCCCSEEECCC
T ss_pred             eEEEeCcCccHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHHCC--------CCcccCChhhCCHhhCCcccEEEecC
Confidence            68999999999998887765 4668899999998887776652        24566776655311 13589998654

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=85.85  E-value=3.1  Score=31.76  Aligned_cols=77  Identities=17%  Similarity=0.082  Sum_probs=51.9

Q ss_pred             CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----C
Q 029554           92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K  158 (191)
Q Consensus        92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~  158 (191)
                      +.+||=.|++.|   .+...|++.+  .+|+.++.++.-++...+....   ...++.++..|+....     +     .
T Consensus        24 ~k~~lVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   98 (279)
T 3sju_A           24 PQTAFVTGVSSGIGLAVARTLAARG--IAVYGCARDAKNVSAAVDGLRA---AGHDVDGSSCDVTSTDEVHAAVAAAVER   98 (279)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHT---TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            457888887665   3445566666  8899999998877776665543   3445788888876432     0     0


Q ss_pred             CCCcceEEeCCcccC
Q 029554          159 ESSLDLAISCLGLHW  173 (191)
Q Consensus       159 ~~~fDlVis~~~l~~  173 (191)
                      -+..|++|.|.++..
T Consensus        99 ~g~id~lv~nAg~~~  113 (279)
T 3sju_A           99 FGPIGILVNSAGRNG  113 (279)
T ss_dssp             HCSCCEEEECCCCCC
T ss_pred             cCCCcEEEECCCCCC
Confidence            146899999887654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=85.83  E-value=1.3  Score=38.48  Aligned_cols=101  Identities=11%  Similarity=-0.064  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhc------------CCCceEEEEEC---ChhHHHHHHHhh-----------hhccCC---
Q 029554           91 TFPTALCLGGSLEAVRRLLRGR------------GGIEKLIMMDT---SYDMLKLCKDAQ-----------QDAHND---  141 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~------------~~~~~v~~vD~---s~~~l~~a~~~~-----------~~~~~~---  141 (191)
                      ..-+|||+|-|+|.+.......            ...-+++++|.   +.+.+..+-+..           ..|...   
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            3458999999999876554332            11246999998   777666443321           112211   


Q ss_pred             ---------CCceeeEecCCCC-CC-CC---CCCcceEEeCC-cccCcCC--hHHHHHHHHhccCCC
Q 029554          142 ---------NIETCFVVGDEEF-LP-LK---ESSLDLAISCL-GLHWTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       142 ---------~~~~~~~~~d~~~-l~-~~---~~~fDlVis~~-~l~~~~d--~~~~l~~i~r~Lkpg  191 (191)
                               ...+....+|+.+ ++ +.   ...||+|+.-. +-.--++  -..++.++.++++||
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g  212 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPG  212 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEE
T ss_pred             ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCC
Confidence                     1223455566432 22 11   36799998733 1111112  256888899988875

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=85.74  E-value=5  Score=30.91  Aligned_cols=78  Identities=15%  Similarity=0.063  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECC------------hhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTS------------YDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s------------~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l  155 (191)
                      .+.++|=.|++.|   .+...|++.+  .+|+.+|.+            +..++...+....   ...++.++..|+...
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~  101 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREG--ADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEA---LGRRIIASQVDVRDF  101 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHH---TTCCEEEEECCTTCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEecccccccccccccCHHHHHHHHHHHHh---cCCceEEEECCCCCH
Confidence            4557888887766   3455566666  899999987            4445544444432   334578888887643


Q ss_pred             C-----C-----CCCCcceEEeCCcccC
Q 029554          156 P-----L-----KESSLDLAISCLGLHW  173 (191)
Q Consensus       156 ~-----~-----~~~~fDlVis~~~l~~  173 (191)
                      .     +     .-+..|++|.|.++..
T Consensus       102 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~  129 (299)
T 3t7c_A          102 DAMQAAVDDGVTQLGRLDIVLANAALAS  129 (299)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence            2     0     0147899999887543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=85.49  E-value=2.7  Score=32.08  Aligned_cols=79  Identities=18%  Similarity=0.131  Sum_probs=53.2

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----  157 (191)
                      .+.+||=.|++.|   .+...|++.+  .+|+.++.++..++...+....   ...++.++..|+....     +     
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~v~~~~~~~~~  105 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAG--AQVAVAARHSDALQVVADEIAG---VGGKALPIRCDVTQPDQVRGMLDQMTG  105 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESSGGGGHHHHHHHHH---TTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4567888887655   3445556666  8999999998877776665543   2345777888876432     0     


Q ss_pred             CCCCcceEEeCCcccCc
Q 029554          158 KESSLDLAISCLGLHWT  174 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~  174 (191)
                      .-+..|++|.|.+....
T Consensus       106 ~~g~iD~lvnnAg~~~~  122 (276)
T 3r1i_A          106 ELGGIDIAVCNAGIVSV  122 (276)
T ss_dssp             HHSCCSEEEECCCCCCC
T ss_pred             HcCCCCEEEECCCCCCC
Confidence            01468999999876543

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=85.21  E-value=2.8  Score=31.79  Aligned_cols=77  Identities=21%  Similarity=0.253  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----CC----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK----  158 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~~----  158 (191)
                      .+.+||=.|++.|   .+...|.+.+  .+|+.++.++.-++...+....   ...++.++..|+....     +.    
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~   94 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLG--ARVYTCSRNEKELDECLEIWRE---KGLNVEGSVCDLLSRTERDKLMQTVAH   94 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHHHHH
Confidence            3467888887554   3344555666  7899999998766655544432   2334777788875421     00    


Q ss_pred             --CCCcceEEeCCccc
Q 029554          159 --ESSLDLAISCLGLH  172 (191)
Q Consensus       159 --~~~fDlVis~~~l~  172 (191)
                        ++..|++|.+.+..
T Consensus        95 ~~~g~id~lv~nAg~~  110 (273)
T 1ae1_A           95 VFDGKLNILVNNAGVV  110 (273)
T ss_dssp             HTTSCCCEEEECCCCC
T ss_pred             HcCCCCcEEEECCCCC
Confidence              16799999998764

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=85.17  E-value=2.5  Score=31.81  Aligned_cols=77  Identities=14%  Similarity=0.115  Sum_probs=51.4

Q ss_pred             CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----C
Q 029554           92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K  158 (191)
Q Consensus        92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~  158 (191)
                      +.+||=.|++.|   .+...|++.+  .+|+.+|.++..++.+.+....   ...++.++..|+....     +     .
T Consensus         6 ~k~vlVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (257)
T 3imf_A            6 EKVVIITGGSSGMGKGMATRFAKEG--ARVVITGRTKEKLEEAKLEIEQ---FPGQILTVQMDVRNTDDIQKMIEQIDEK   80 (257)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHCC---STTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            456777776555   3344556666  8899999999887777665532   3345778888876431     0     0


Q ss_pred             CCCcceEEeCCcccC
Q 029554          159 ESSLDLAISCLGLHW  173 (191)
Q Consensus       159 ~~~fDlVis~~~l~~  173 (191)
                      -+..|++|.|.+...
T Consensus        81 ~g~id~lv~nAg~~~   95 (257)
T 3imf_A           81 FGRIDILINNAAGNF   95 (257)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            146899999887543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=85.12  E-value=6  Score=30.85  Aligned_cols=80  Identities=18%  Similarity=0.133  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----  157 (191)
                      .+.+||=.|++.|   .+...|.+.+  .+|++++.++.-++...+.+... ....++.++..|+....     +     
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G--~~Vv~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   83 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQG--CKVAIADIRQDSIDKALATLEAE-GSGPEVMGVQLDVASREGFKMAADEVEA   83 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHH-TCGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhc-CCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            3457888887655   3445556666  78999999998777766555331 12235788888876432     0     


Q ss_pred             CCCCcceEEeCCcccC
Q 029554          158 KESSLDLAISCLGLHW  173 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~  173 (191)
                      ..+..|+||.|.++..
T Consensus        84 ~~g~id~lv~nAg~~~   99 (319)
T 3ioy_A           84 RFGPVSILCNNAGVNL   99 (319)
T ss_dssp             HTCCEEEEEECCCCCC
T ss_pred             hCCCCCEEEECCCcCC
Confidence            1146899999988654

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=85.09  E-value=5.2  Score=31.69  Aligned_cols=41  Identities=17%  Similarity=0.353  Sum_probs=29.3

Q ss_pred             CeEEEEcCCc-cHHH-HHHh-hcCCCceEEEEECChh---HHHHHHH
Q 029554           93 PTALCLGGSL-EAVR-RLLR-GRGGIEKLIMMDTSYD---MLKLCKD  133 (191)
Q Consensus        93 ~~VLDlGcG~-G~~~-~~l~-~~~~~~~v~~vD~s~~---~l~~a~~  133 (191)
                      .+||-+|+|. |..+ ..++ +.....+|+++|.++.   -++.+++
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~  220 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE  220 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH
Confidence            8999999853 5556 6666 5433334999999987   7777754

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=84.78  E-value=4.3  Score=31.91  Aligned_cols=44  Identities=18%  Similarity=0.059  Sum_probs=32.2

Q ss_pred             ccCCCeEEEEcCC-ccHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554           89 RKTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (191)
Q Consensus        89 ~~~~~~VLDlGcG-~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~  133 (191)
                      ..++.+||-+|+| .|.....+++.. ..+|+++|.++.-++.+++
T Consensus       162 ~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~  206 (339)
T 1rjw_A          162 AKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKE  206 (339)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Confidence            4577899999985 355555555443 2699999999988887754

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=84.68  E-value=3.1  Score=31.50  Aligned_cols=79  Identities=16%  Similarity=0.163  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC----------
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL----------  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~----------  157 (191)
                      .+.+||=.|++.|   .+...|++.+  .+|+.++.++.-++...+....  ....++.++..|+....-          
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   94 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAG--ARLVLSGRDVSELDAARRALGE--QFGTDVHTVAIDLAEPDAPAELARRAAE   94 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH--HHCCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHH--hcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            4557787777655   3344556666  8899999998877766555432  123457888888765430          


Q ss_pred             CCCCcceEEeCCcccC
Q 029554          158 KESSLDLAISCLGLHW  173 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~  173 (191)
                      .-+..|++|.|.++..
T Consensus        95 ~~g~id~lv~nAg~~~  110 (266)
T 4egf_A           95 AFGGLDVLVNNAGISH  110 (266)
T ss_dssp             HHTSCSEEEEECCCCC
T ss_pred             HcCCCCEEEECCCcCC
Confidence            0147899999887654

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=84.65  E-value=2.3  Score=33.45  Aligned_cols=44  Identities=9%  Similarity=-0.067  Sum_probs=33.0

Q ss_pred             ccCCCeEEEEcCC--ccHHHHHHhh-cCCCceEEEEECChhHHHHHHHh
Q 029554           89 RKTFPTALCLGGS--LEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDA  134 (191)
Q Consensus        89 ~~~~~~VLDlGcG--~G~~~~~l~~-~~~~~~v~~vD~s~~~l~~a~~~  134 (191)
                      ..++.+||-+|+|  .|..+..+++ .+  .+|+++|.++.-++.+++.
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~l  188 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQILN--FRLIAVTRNNKHTEELLRL  188 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHHH
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhC
Confidence            3467899999987  4566555554 34  6899999999888887653

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=84.61  E-value=7.2  Score=29.71  Aligned_cols=80  Identities=15%  Similarity=0.159  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEEC-ChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDT-SYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------  156 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~-s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------  156 (191)
                      .+.+||=.|++.|   .+...|++.+  .+|+.+|. ++..++...+....  ....++.++..|+....          
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~   99 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAG--ANIVLNGFGAPDEIRTVTDEVAG--LSSGTVLHHPADMTKPSEIADMMAMVA   99 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEECCCCHHHHHHHHHHHHT--TCSSCEEEECCCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCChHHHHHHHHHHhh--ccCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence            3457888887665   3445556666  79999998 55555555444432  12345777888876421          


Q ss_pred             CCCCCcceEEeCCcccCc
Q 029554          157 LKESSLDLAISCLGLHWT  174 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~~~  174 (191)
                      -.-+..|++|.|.++...
T Consensus       100 ~~~g~iD~lv~nAg~~~~  117 (281)
T 3v2h_A          100 DRFGGADILVNNAGVQFV  117 (281)
T ss_dssp             HHTSSCSEEEECCCCCCC
T ss_pred             HHCCCCCEEEECCCCCCC
Confidence            011478999999886543

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=84.59  E-value=3.1  Score=31.63  Aligned_cols=77  Identities=16%  Similarity=0.047  Sum_probs=51.2

Q ss_pred             CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----C
Q 029554           92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K  158 (191)
Q Consensus        92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~  158 (191)
                      +.+||=.|++.|   .+...|++.+  .+|+.++.++..++...+....   ...++.++..|+....     +     .
T Consensus         4 ~k~~lVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   78 (264)
T 3tfo_A            4 DKVILITGASGGIGEGIARELGVAG--AKILLGARRQARIEAIATEIRD---AGGTALAQVLDVTDRHSVAAFAQAAVDT   78 (264)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            356777787655   3344556666  8899999998877776665543   2345777778876421     0     0


Q ss_pred             CCCcceEEeCCcccC
Q 029554          159 ESSLDLAISCLGLHW  173 (191)
Q Consensus       159 ~~~fDlVis~~~l~~  173 (191)
                      -+..|++|.|.++..
T Consensus        79 ~g~iD~lVnnAG~~~   93 (264)
T 3tfo_A           79 WGRIDVLVNNAGVMP   93 (264)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            146899999987654

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=84.50  E-value=4.3  Score=30.70  Aligned_cols=78  Identities=13%  Similarity=0.039  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----  157 (191)
                      .+.+||=.|++.|   .+...|.+.+  .+|+++|.++.-++...+....   ...++.++..|+....     +     
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~~  104 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLK--SKLVLWDINKHGLEETAAKCKG---LGAKVHTFVVDCSNREDIYSSAKKVKA  104 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEEcCHHHHHHHHHHHHh---cCCeEEEEEeeCCCHHHHHHHHHHHHH
Confidence            3457888886544   2333445556  7899999998766665554432   2335778888876421     0     


Q ss_pred             CCCCcceEEeCCcccC
Q 029554          158 KESSLDLAISCLGLHW  173 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~  173 (191)
                      .-+.+|+||.+.+...
T Consensus       105 ~~g~iD~li~~Ag~~~  120 (272)
T 1yb1_A          105 EIGDVSILVNNAGVVY  120 (272)
T ss_dssp             HTCCCSEEEECCCCCC
T ss_pred             HCCCCcEEEECCCcCC
Confidence            0146899999887654

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=84.20  E-value=3.3  Score=31.07  Aligned_cols=78  Identities=18%  Similarity=0.175  Sum_probs=49.6

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----CC----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK----  158 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~~----  158 (191)
                      .+.+||=.|++.|   .+...|.+.+  .+|+.++.++.-++...+....   ...++.++..|+....     +.    
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLG--ASVYTCSRNQKELNDCLTQWRS---KGFKVEASVCDLSSRSERQELMNTVAN   82 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3457888886554   3344555666  7899999998766655544432   2335777888876421     00    


Q ss_pred             --CCCcceEEeCCcccC
Q 029554          159 --ESSLDLAISCLGLHW  173 (191)
Q Consensus       159 --~~~fDlVis~~~l~~  173 (191)
                        .+..|++|.+.++..
T Consensus        83 ~~~g~id~lv~~Ag~~~   99 (260)
T 2ae2_A           83 HFHGKLNILVNNAGIVI   99 (260)
T ss_dssp             HTTTCCCEEEECCCCCC
T ss_pred             HcCCCCCEEEECCCCCC
Confidence              157999999887643

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=84.19  E-value=2.5  Score=32.26  Aligned_cols=79  Identities=16%  Similarity=0.120  Sum_probs=52.2

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+.++|=.|++.|   .+...|++.+  .+|+.+|.++.-++...+....   ...++.++..|+....          -
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~   99 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAG--ARILINGTDPSRVAQTVQEFRN---VGHDAEAVAFDVTSESEIIEAFARLDE   99 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT--CEEEECCSCHHHHHHHHHHHHH---TTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            4567787786655   3444556666  8999999998877776665543   3345777778876432          0


Q ss_pred             CCCCcceEEeCCcccCc
Q 029554          158 KESSLDLAISCLGLHWT  174 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~  174 (191)
                      ..+..|++|.|.++...
T Consensus       100 ~~g~iD~lv~nAg~~~~  116 (271)
T 4ibo_A          100 QGIDVDILVNNAGIQFR  116 (271)
T ss_dssp             HTCCCCEEEECCCCCCC
T ss_pred             HCCCCCEEEECCCCCCC
Confidence            12468999999886543

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=84.19  E-value=6.6  Score=29.78  Aligned_cols=78  Identities=18%  Similarity=0.099  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEEC-------------ChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDT-------------SYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~-------------s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      .+.+||=.|++.|   .+...|++.+  .+|+++|.             ++.-++...+....   ...++.++..|+..
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~   88 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEG--ADIIACDICAPVSASVTYAPASPEDLDETARLVED---QGRKALTRVLDVRD   88 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHT---TTCCEEEEECCTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeccccccccccccccCHHHHHHHHHHHHh---cCCeEEEEEcCCCC
Confidence            4567888887665   3455566666  89999997             55555555544432   34457788888764


Q ss_pred             CC-----C-----CCCCcceEEeCCcccC
Q 029554          155 LP-----L-----KESSLDLAISCLGLHW  173 (191)
Q Consensus       155 l~-----~-----~~~~fDlVis~~~l~~  173 (191)
                      ..     +     .-+..|++|.|.+...
T Consensus        89 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~  117 (280)
T 3pgx_A           89 DAALRELVADGMEQFGRLDVVVANAGVLS  117 (280)
T ss_dssp             HHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            21     0     0146899999987654

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=84.12  E-value=5.1  Score=29.57  Aligned_cols=78  Identities=13%  Similarity=0.103  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC----------
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL----------  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~----------  157 (191)
                      .+.+||=.|++.|   .+...|.+.+  .+|+.++.++.-++...+....  ....+..++..|++....          
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~d~d~~~~~~~~~~~~~~   88 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHG--ASVVLLGRTEASLAEVSDQIKS--AGQPQPLIIALNLENATAQQYRELAARV   88 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH--TTSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEecCHHHHHHHHHHHHh--cCCCCceEEEeccccCCHHHHHHHHHHH
Confidence            3456787787654   3344555666  7899999999887777666543  222345666666532110          


Q ss_pred             --CCCCcceEEeCCccc
Q 029554          158 --KESSLDLAISCLGLH  172 (191)
Q Consensus       158 --~~~~fDlVis~~~l~  172 (191)
                        .-+..|++|.+.+..
T Consensus        89 ~~~~g~id~lv~nAg~~  105 (247)
T 3i1j_A           89 EHEFGRLDGLLHNASII  105 (247)
T ss_dssp             HHHHSCCSEEEECCCCC
T ss_pred             HHhCCCCCEEEECCccC
Confidence              014689999988763

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=84.07  E-value=3.4  Score=32.75  Aligned_cols=45  Identities=20%  Similarity=0.159  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~  133 (191)
                      ..++.+||-+|+|. |..+..+++.....+|+++|.++.-++.+++
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            45788999999875 6666666665433489999999988887764

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=84.04  E-value=1.9  Score=33.86  Aligned_cols=88  Identities=10%  Similarity=0.041  Sum_probs=50.5

Q ss_pred             ccCCCeEEEEcC--CccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC---C-CCCCCCc
Q 029554           89 RKTFPTALCLGG--SLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF---L-PLKESSL  162 (191)
Q Consensus        89 ~~~~~~VLDlGc--G~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~---l-~~~~~~f  162 (191)
                      ..++.+||-+|+  |.|.....++... ..+|+++|.++.-++.+.+...     . ...+...+.+.   + ....+.+
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g-----~-~~~~~~~~~~~~~~~~~~~~~~~  219 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEELG-----F-DGAIDYKNEDLAAGLKRECPKGI  219 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC-----C-SEEEETTTSCHHHHHHHHCTTCE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcC-----C-CEEEECCCHHHHHHHHHhcCCCc
Confidence            457889999998  4566665555443 2699999999988777733321     1 11111111110   0 0112469


Q ss_pred             ceEEeCCcccCcCChHHHHHHHHhccCC
Q 029554          163 DLAISCLGLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       163 DlVis~~~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                      |+|+.+.+-       ..+....++|+|
T Consensus       220 d~vi~~~g~-------~~~~~~~~~l~~  240 (336)
T 4b7c_A          220 DVFFDNVGG-------EILDTVLTRIAF  240 (336)
T ss_dssp             EEEEESSCH-------HHHHHHHTTEEE
T ss_pred             eEEEECCCc-------chHHHHHHHHhh
Confidence            999987652       355666666655

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=83.90  E-value=4.6  Score=30.61  Aligned_cols=79  Identities=19%  Similarity=0.142  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEEC-------------ChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDT-------------SYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~-------------s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      .+.++|=.|++.|   .+...|++.+  .+|+.+|.             ++..++...+....   ...++.++..|+..
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~   84 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEG--ADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEA---ANRRIVAAVVDTRD   84 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHH---TTCCEEEEECCTTC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcC--CEEEEEeccccccccccccccCHHHHHHHHHHHHh---cCCeEEEEECCCCC
Confidence            4567888887665   3455566666  89999998             55555555444432   33457778888764


Q ss_pred             CC-----CC-----CCCcceEEeCCcccCc
Q 029554          155 LP-----LK-----ESSLDLAISCLGLHWT  174 (191)
Q Consensus       155 l~-----~~-----~~~fDlVis~~~l~~~  174 (191)
                      ..     +.     -+..|++|.|.++...
T Consensus        85 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~~  114 (277)
T 3tsc_A           85 FDRLRKVVDDGVAALGRLDIIVANAGVAAP  114 (277)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence            32     01     1468999999876543

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=83.74  E-value=3.8  Score=30.59  Aligned_cols=76  Identities=18%  Similarity=0.168  Sum_probs=49.2

Q ss_pred             CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----CC-----
Q 029554           92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----  158 (191)
Q Consensus        92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~~-----  158 (191)
                      +.++|=.|++.|   .+...|.+.+  .+|+.++.++..++...+....   ...++.++..|+....     +.     
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~~~   81 (247)
T 2jah_A            7 GKVALITGASSGIGEATARALAAEG--AAVAIAARRVEKLRALGDELTA---AGAKVHVLELDVADRQGVDAAVASTVEA   81 (247)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            457888887655   3344555666  7899999998776665554432   2335777788876421     00     


Q ss_pred             CCCcceEEeCCccc
Q 029554          159 ESSLDLAISCLGLH  172 (191)
Q Consensus       159 ~~~fDlVis~~~l~  172 (191)
                      -+..|++|.|.+..
T Consensus        82 ~g~id~lv~nAg~~   95 (247)
T 2jah_A           82 LGGLDILVNNAGIM   95 (247)
T ss_dssp             HSCCSEEEECCCCC
T ss_pred             cCCCCEEEECCCCC
Confidence            14689999988764

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=83.55  E-value=2.1  Score=32.50  Aligned_cols=73  Identities=12%  Similarity=0.058  Sum_probs=49.0

Q ss_pred             CeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CCC
Q 029554           93 PTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LKE  159 (191)
Q Consensus        93 ~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~~  159 (191)
                      .+||=-|++.|   .....|++.+  .+|+.+|.+++.++...+.       ..+..++..|+....          -.-
T Consensus         3 K~vlVTGas~GIG~aia~~la~~G--a~V~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~v~~~~~~~   73 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAG--DKVCFIDIDEKRSADFAKE-------RPNLFYFHGDVADPLTLKKFVEYAMEKL   73 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHTT-------CTTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHh-------cCCEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45777787776   3455667777  8999999998766554332       234677788876421          011


Q ss_pred             CCcceEEeCCcccCc
Q 029554          160 SSLDLAISCLGLHWT  174 (191)
Q Consensus       160 ~~fDlVis~~~l~~~  174 (191)
                      +..|++|.|.+....
T Consensus        74 g~iDiLVNNAG~~~~   88 (247)
T 3ged_A           74 QRIDVLVNNACRGSK   88 (247)
T ss_dssp             SCCCEEEECCCCCCC
T ss_pred             CCCCEEEECCCCCCC
Confidence            579999999876543

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=83.52  E-value=7.4  Score=29.25  Aligned_cols=80  Identities=16%  Similarity=0.079  Sum_probs=52.4

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----  157 (191)
                      .+.++|=.|++.|   .+...|++.+  .+|+.+|.++.-++...+..... ....++.++..|+....     +     
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAG--AAVAFCARDGERLRAAESALRQR-FPGARLFASVCDVLDALQVRAFAEACER   83 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHH-STTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHh-cCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4567888887665   3455566666  88999999988777666554320 12234777888876432     0     


Q ss_pred             CCCCcceEEeCCcccC
Q 029554          158 KESSLDLAISCLGLHW  173 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~  173 (191)
                      .-+..|++|.|.++..
T Consensus        84 ~~g~id~lvnnAg~~~   99 (265)
T 3lf2_A           84 TLGCASILVNNAGQGR   99 (265)
T ss_dssp             HHCSCSEEEECCCCCC
T ss_pred             HcCCCCEEEECCCCCC
Confidence            0146899999987654

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=83.49  E-value=4.6  Score=31.19  Aligned_cols=79  Identities=14%  Similarity=0.056  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----  157 (191)
                      .+.+||=.|++.|   .+...|++.+  .+|+.+|.++.-++...+.+..  ....++.++..|+....     +     
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  115 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAG--ANVAVAARSPRELSSVTAELGE--LGAGNVIGVRLDVSDPGSCADAARTVVD  115 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSGGGGHHHHHHHTT--SSSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh--hCCCcEEEEEEeCCCHHHHHHHHHHHHH
Confidence            4456777776655   3344556666  8999999998877776665543  12246788888876431     0     


Q ss_pred             CCCCcceEEeCCcccC
Q 029554          158 KESSLDLAISCLGLHW  173 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~  173 (191)
                      .-+..|++|.|.++..
T Consensus       116 ~~g~iD~lvnnAg~~~  131 (293)
T 3rih_A          116 AFGALDVVCANAGIFP  131 (293)
T ss_dssp             HHSCCCEEEECCCCCC
T ss_pred             HcCCCCEEEECCCCCC
Confidence            1146899999887653

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=83.27  E-value=10  Score=28.42  Aligned_cols=69  Identities=14%  Similarity=0.074  Sum_probs=48.0

Q ss_pred             CeEEEEcCCccHHHHHHhh----cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           93 PTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~----~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      .+||=.||  |.++..+.+    .+  .+|++++-++.-......         ..+.++.+|+..+.  -..+|.||.+
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~---------~~~~~~~~D~~d~~--~~~~d~vi~~   70 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQG--WRIIGTSRNPDQMEAIRA---------SGAEPLLWPGEEPS--LDGVTHLLIS   70 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGT--CEEEEEESCGGGHHHHHH---------TTEEEEESSSSCCC--CTTCCEEEEC
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCC--CEEEEEEcChhhhhhHhh---------CCCeEEEecccccc--cCCCCEEEEC
Confidence            47999995  777766653    44  789999998865544322         13778888887765  4568999988


Q ss_pred             CcccCcCC
Q 029554          169 LGLHWTND  176 (191)
Q Consensus       169 ~~l~~~~d  176 (191)
                      .+.....+
T Consensus        71 a~~~~~~~   78 (286)
T 3ius_A           71 TAPDSGGD   78 (286)
T ss_dssp             CCCBTTBC
T ss_pred             CCcccccc
Confidence            77654433

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=83.19  E-value=3.2  Score=31.35  Aligned_cols=79  Identities=11%  Similarity=0.096  Sum_probs=51.6

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----  157 (191)
                      .+.+||=.|++.|   .+...|++.+  .+|+.+|.++.-++.+.+....  ....++.++..|+....     +     
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAG--ANVAVAGRSTADIDACVADLDQ--LGSGKVIGVQTDVSDRAQCDALAGRAVE   84 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHT--TSSSCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh--hCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3456777776554   3344555666  7999999999877776665543  12246788888876432     0     


Q ss_pred             CCCCcceEEeCCcccC
Q 029554          158 KESSLDLAISCLGLHW  173 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~  173 (191)
                      .-+..|++|.|.++..
T Consensus        85 ~~g~id~lvnnAg~~~  100 (262)
T 3pk0_A           85 EFGGIDVVCANAGVFP  100 (262)
T ss_dssp             HHSCCSEEEECCCCCC
T ss_pred             HhCCCCEEEECCCCCC
Confidence            0146899999887643

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=83.19  E-value=3.9  Score=31.00  Aligned_cols=78  Identities=17%  Similarity=0.121  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECC------------hhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTS------------YDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s------------~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l  155 (191)
                      .+.+||=.|++.|   .+...|++.+  .+|+.+|.+            ..-++........   ...++.++..|+...
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~   83 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEG--ADIILFDICHDIETNEYPLATSRDLEEAGLEVEK---TGRKAYTAEVDVRDR   83 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHH---TTSCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCC--CeEEEEcccccccccccchhhhHHHHHHHHHHHh---cCCceEEEEccCCCH
Confidence            3557888887655   3445566666  899999987            5555555444432   344578888887643


Q ss_pred             C-----C-----CCCCcceEEeCCcccC
Q 029554          156 P-----L-----KESSLDLAISCLGLHW  173 (191)
Q Consensus       156 ~-----~-----~~~~fDlVis~~~l~~  173 (191)
                      .     +     .-+..|++|.|.++..
T Consensus        84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~  111 (287)
T 3pxx_A           84 AAVSRELANAVAEFGKLDVVVANAGICP  111 (287)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCcCc
Confidence            2     0     0146899999887643

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=82.89  E-value=7.4  Score=29.17  Aligned_cols=84  Identities=20%  Similarity=0.236  Sum_probs=50.7

Q ss_pred             CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----CC-----
Q 029554           92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----  158 (191)
Q Consensus        92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~~-----  158 (191)
                      +.+||=.|++.|   .+...|.+.+  .+|++++.++.-.+...+..... ....++.++..|+....     +.     
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKG--AKVALVDWNLEAGVQCKAALHEQ-FEPQKTLFIQCDVADQQQLRDTFRKVVDH   83 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHTTT-SCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhh-cCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence            456888886554   3344555666  88999999887665544443210 01235677888876421     00     


Q ss_pred             CCCcceEEeCCcccCcCChH
Q 029554          159 ESSLDLAISCLGLHWTNDLP  178 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~~d~~  178 (191)
                      -+..|++|.+.+.....+..
T Consensus        84 ~g~id~lv~~Ag~~~~~~~~  103 (267)
T 2gdz_A           84 FGRLDILVNNAGVNNEKNWE  103 (267)
T ss_dssp             HSCCCEEEECCCCCCSSSHH
T ss_pred             cCCCCEEEECCCCCChhhHH
Confidence            13589999998765444444

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=82.65  E-value=5.7  Score=30.17  Aligned_cols=77  Identities=16%  Similarity=0.183  Sum_probs=48.9

Q ss_pred             CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----C
Q 029554           92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K  158 (191)
Q Consensus        92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~  158 (191)
                      +.+||=.|++.|   .+...|.+.+  .+|++++.++.-++...+....   ...++.++..|+....     +     .
T Consensus        22 ~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   96 (277)
T 2rhc_B           22 SEVALVTGATSGIGLEIARRLGKEG--LRVFVCARGEEGLRTTLKELRE---AGVEADGRTCDVRSVPEIEALVAAVVER   96 (277)
T ss_dssp             SCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            457888887654   3344555666  7899999998766655444432   2234677778876421     0     0


Q ss_pred             CCCcceEEeCCcccC
Q 029554          159 ESSLDLAISCLGLHW  173 (191)
Q Consensus       159 ~~~fDlVis~~~l~~  173 (191)
                      -+.+|+||.+.+...
T Consensus        97 ~g~iD~lv~~Ag~~~  111 (277)
T 2rhc_B           97 YGPVDVLVNNAGRPG  111 (277)
T ss_dssp             TCSCSEEEECCCCCC
T ss_pred             hCCCCEEEECCCCCC
Confidence            146899999887643

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=82.57  E-value=4.8  Score=30.09  Aligned_cols=77  Identities=14%  Similarity=0.125  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----------
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----------  156 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----------  156 (191)
                      .+.+||=.|++.|   .+...|++.+  .+|+.+|.++.-++...+....  ....++.++..|+....           
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~   86 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYG--ATVILLGRNEEKLRQVASHINE--ETGRQPQWFILDLLTCTSENCQQLAQRI   86 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH--HHSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh--hcCCCceEEEEecccCCHHHHHHHHHHH
Confidence            3457888887655   3344556666  7999999998877766555432  11224677777872211           


Q ss_pred             -CCCCCcceEEeCCcc
Q 029554          157 -LKESSLDLAISCLGL  171 (191)
Q Consensus       157 -~~~~~fDlVis~~~l  171 (191)
                       -.-+..|++|.|.+.
T Consensus        87 ~~~~g~id~lv~nAg~  102 (252)
T 3f1l_A           87 AVNYPRLDGVLHNAGL  102 (252)
T ss_dssp             HHHCSCCSEEEECCCC
T ss_pred             HHhCCCCCEEEECCcc
Confidence             011478999998876

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=82.45  E-value=7.4  Score=29.12  Aligned_cols=75  Identities=16%  Similarity=0.131  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC----------
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL----------  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~----------  157 (191)
                      .+.++|=.|++.|   .+...|++.+  .+|+.+|.++.-++...+..      ..++.++..|+....-          
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGG--AEVLLTGRNESNIARIREEF------GPRVHALRSDIADLNEIAVLGAAAGQ   78 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH------GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh------CCcceEEEccCCCHHHHHHHHHHHHH
Confidence            4567888887665   3345556666  89999999988776665543      1247778888764320          


Q ss_pred             CCCCcceEEeCCcccC
Q 029554          158 KESSLDLAISCLGLHW  173 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~  173 (191)
                      .-+..|++|.|.+...
T Consensus        79 ~~g~id~lv~nAg~~~   94 (255)
T 4eso_A           79 TLGAIDLLHINAGVSE   94 (255)
T ss_dssp             HHSSEEEEEECCCCCC
T ss_pred             HhCCCCEEEECCCCCC
Confidence            0147899999887654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=82.45  E-value=8  Score=30.25  Aligned_cols=86  Identities=15%  Similarity=0.064  Sum_probs=52.0

Q ss_pred             CCeEEEEcCCc--cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCCCCCCcceEEeC
Q 029554           92 FPTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKESSLDLAISC  168 (191)
Q Consensus        92 ~~~VLDlGcG~--G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~~~~~fDlVis~  168 (191)
                      ..+|.=||+|.  +.++..|.+.+...+|+++|.++..++.+.+..     .   +.....+.+. .   -...|+|+..
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G-----~---~~~~~~~~~~~~---~~~aDvVila  101 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG-----I---IDEGTTSIAKVE---DFSPDFVMLS  101 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT-----S---CSEEESCTTGGG---GGCCSEEEEC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCC-----C---cchhcCCHHHHh---hccCCEEEEe
Confidence            35788999873  344555666562238999999998777765421     1   1112233332 1   1347999876


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      --..   ....++.++...|+||
T Consensus       102 vp~~---~~~~vl~~l~~~l~~~  121 (314)
T 3ggo_A          102 SPVR---TFREIAKKLSYILSED  121 (314)
T ss_dssp             SCGG---GHHHHHHHHHHHSCTT
T ss_pred             CCHH---HHHHHHHHHhhccCCC
Confidence            5443   3466778888777765

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=81.92  E-value=5.5  Score=30.35  Aligned_cols=76  Identities=16%  Similarity=0.208  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEEC-ChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDT-SYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~-s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----  157 (191)
                      .+.++|=.|++.|   .+...|++.+  .+|+.+|. ++..++...+....   ...++.++..|+....     +    
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~G--~~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~  102 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAASG--FDIAITGIGDAEGVAPVIAELSG---LGARVIFLRADLADLSSHQATVDAVV  102 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCCHHHHHHHHHHHHH---TTCCEEEEECCTTSGGGHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCC--CeEEEEeCCCHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHHH
Confidence            4567888887665   3455566666  89999995 66655555544432   2345788888876532     0    


Q ss_pred             -CCCCcceEEeCCcc
Q 029554          158 -KESSLDLAISCLGL  171 (191)
Q Consensus       158 -~~~~fDlVis~~~l  171 (191)
                       .-+..|++|.|.++
T Consensus       103 ~~~g~iD~lvnnAg~  117 (280)
T 4da9_A          103 AEFGRIDCLVNNAGI  117 (280)
T ss_dssp             HHHSCCCEEEEECC-
T ss_pred             HHcCCCCEEEECCCc
Confidence             01468999998876

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=81.86  E-value=5.2  Score=30.12  Aligned_cols=78  Identities=14%  Similarity=0.088  Sum_probs=53.4

Q ss_pred             CCCeEEEEcCC----cc-HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---------
Q 029554           91 TFPTALCLGGS----LE-AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---------  156 (191)
Q Consensus        91 ~~~~VLDlGcG----~G-~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---------  156 (191)
                      .+.++|=-|++    -| .....|++.+  .+|+.+|.++..++.+.+...+  ....++.++..|+....         
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~G--a~Vvi~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~   80 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLG--AKLVFTYRKERSRKELEKLLEQ--LNQPEAHLYQIDVQSDEEVINGFEQI   80 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHHGG--GTCSSCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh--cCCCcEEEEEccCCCHHHHHHHHHHH
Confidence            46678888853    34 3456677777  8999999999888877766654  22345777888866421         


Q ss_pred             -CCCCCcceEEeCCccc
Q 029554          157 -LKESSLDLAISCLGLH  172 (191)
Q Consensus       157 -~~~~~fDlVis~~~l~  172 (191)
                       -.-+..|.++.|.++.
T Consensus        81 ~~~~G~iD~lvnnAg~~   97 (256)
T 4fs3_A           81 GKDVGNIDGVYHSIAFA   97 (256)
T ss_dssp             HHHHCCCSEEEECCCCC
T ss_pred             HHHhCCCCEEEeccccc
Confidence             0126799999987654

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=81.67  E-value=4.9  Score=30.19  Aligned_cols=77  Identities=16%  Similarity=0.190  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----  157 (191)
                      .+.+||=.|++.|   .+...|.+.+  .+|+.++.++.-++...+....   ...++.++..|+....     +     
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEG--TAIALLDMNREALEKAEASVRE---KGVEARSYVCDVTSEEAVIGTVDSVVR   80 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHT---TTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            3457888887655   3344555666  7899999998776665554432   2335777788876431     0     


Q ss_pred             CCCCcceEEeCCccc
Q 029554          158 KESSLDLAISCLGLH  172 (191)
Q Consensus       158 ~~~~fDlVis~~~l~  172 (191)
                      .-+..|++|.|.+..
T Consensus        81 ~~g~id~lv~nAg~~   95 (262)
T 1zem_A           81 DFGKIDFLFNNAGYQ   95 (262)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HhCCCCEEEECCCCC
Confidence            014689999988754

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=81.54  E-value=4.1  Score=30.98  Aligned_cols=79  Identities=13%  Similarity=0.157  Sum_probs=50.7

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----  157 (191)
                      .+.++|=.|++.|   .+...|++.+  .+|+.++.+..-++...+....  ....++.++..|+....     +     
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~~~  101 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHG--CHTVIASRSLPRVLTAARKLAG--ATGRRCLPLSMDVRAPPAVMAAVDQALK  101 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTT--CEEEEEESCHHHHHHHHHHHHH--HHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHH--hcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3457888887655   3345556666  7999999998766655544422  12345778888876431     0     


Q ss_pred             CCCCcceEEeCCcccC
Q 029554          158 KESSLDLAISCLGLHW  173 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~  173 (191)
                      .-+..|++|.|.+...
T Consensus       102 ~~g~id~lv~nAg~~~  117 (277)
T 4fc7_A          102 EFGRIDILINCAAGNF  117 (277)
T ss_dssp             HHSCCCEEEECCCCCC
T ss_pred             HcCCCCEEEECCcCCC
Confidence            0147899999887543

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=81.01  E-value=2.2  Score=32.68  Aligned_cols=77  Identities=21%  Similarity=0.173  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----  157 (191)
                      .+.+||=.|++.|   .+...|++.+  .+|+.+|.++..++...+....   ...++.++..|+....     +     
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREG--AKVVVTARNGNALAELTDEIAG---GGGEAAALAGDVGDEALHEALVELAVR   81 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTT--CEEEECCSCHHHHHHHHHHHTT---TTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            3556787787655   3345556666  8899999998877776665532   3445777778876431     0     


Q ss_pred             CCCCcceEEeCCccc
Q 029554          158 KESSLDLAISCLGLH  172 (191)
Q Consensus       158 ~~~~fDlVis~~~l~  172 (191)
                      .-+..|++|.|.++.
T Consensus        82 ~~g~iD~lvnnAg~~   96 (280)
T 3tox_A           82 RFGGLDTAFNNAGAL   96 (280)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HcCCCCEEEECCCCC
Confidence            014689999988754

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=80.89  E-value=8.3  Score=29.26  Aligned_cols=78  Identities=17%  Similarity=0.133  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----C-----C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----L-----K  158 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----~-----~  158 (191)
                      .+.+||=.|++.|   .+...|++.+  .+|+.+|-++.. +...+...   ....++.++..|+....    +     .
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~-~~~~~~~~---~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  103 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAG--AHVLAWGRTDGV-KEVADEIA---DGGGSAEAVVADLADLEGAANVAEELAA  103 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSTHH-HHHHHHHH---TTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEcCHHHH-HHHHHHHH---hcCCcEEEEEecCCCHHHHHHHHHHHHh
Confidence            4567888887665   3455566666  789999955443 33333332   23445778888876432    0     0


Q ss_pred             CCCcceEEeCCcccCc
Q 029554          159 ESSLDLAISCLGLHWT  174 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~  174 (191)
                      .+..|++|.|.++...
T Consensus       104 ~g~iD~lv~nAg~~~~  119 (273)
T 3uf0_A          104 TRRVDVLVNNAGIIAR  119 (273)
T ss_dssp             HSCCCEEEECCCCCCC
T ss_pred             cCCCcEEEECCCCCCC
Confidence            1478999999876543

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=80.65  E-value=7.1  Score=28.88  Aligned_cols=75  Identities=28%  Similarity=0.257  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC------CCCCC
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP------LKESS  161 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~------~~~~~  161 (191)
                      .+.+||=.|++.|   .+...|++.+  .+|+.++.++..++...+...      .++.+...|+....      -..+.
T Consensus        13 ~~k~vlVTGas~gIG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~   84 (249)
T 3f9i_A           13 TGKTSLITGASSGIGSAIARLLHKLG--SKVIISGSNEEKLKSLGNALK------DNYTIEVCNLANKEECSNLISKTSN   84 (249)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHC------SSEEEEECCTTSHHHHHHHHHTCSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHhc------cCccEEEcCCCCHHHHHHHHHhcCC
Confidence            5567888887655   3344555666  889999999887776655432      23667777765421      01246


Q ss_pred             cceEEeCCcccC
Q 029554          162 LDLAISCLGLHW  173 (191)
Q Consensus       162 fDlVis~~~l~~  173 (191)
                      .|++|.+.+...
T Consensus        85 id~li~~Ag~~~   96 (249)
T 3f9i_A           85 LDILVCNAGITS   96 (249)
T ss_dssp             CSEEEECCC---
T ss_pred             CCEEEECCCCCC
Confidence            899999887643

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=80.44  E-value=11  Score=28.42  Aligned_cols=78  Identities=19%  Similarity=0.127  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECC------------hhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTS------------YDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s------------~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l  155 (191)
                      .+.++|=.|++.|   .+...|++.+  .+|+.+|.+            ...++...+....   ...++.++..|+...
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~   83 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAG--ADIAICDRCENSDVVGYPLATADDLAETVALVEK---TGRRCISAKVDVKDR   83 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHH---TTCCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCC--CeEEEEeCCccccccccccccHHHHHHHHHHHHh---cCCeEEEEeCCCCCH
Confidence            4567888887665   3445556666  889999986            4444444333322   334577888887643


Q ss_pred             C-----C-----CCCCcceEEeCCcccC
Q 029554          156 P-----L-----KESSLDLAISCLGLHW  173 (191)
Q Consensus       156 ~-----~-----~~~~fDlVis~~~l~~  173 (191)
                      .     +     .-+..|++|.|.++..
T Consensus        84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~  111 (281)
T 3s55_A           84 AALESFVAEAEDTLGGIDIAITNAGIST  111 (281)
T ss_dssp             HHHHHHHHHHHHHHTCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence            1     0     0146899999887654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=80.24  E-value=4.7  Score=28.44  Aligned_cols=67  Identities=15%  Similarity=0.214  Sum_probs=40.1

Q ss_pred             CCeEEEEcCCc-c-HHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC---C-CC-CCCCcc
Q 029554           92 FPTALCLGGSL-E-AVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF---L-PL-KESSLD  163 (191)
Q Consensus        92 ~~~VLDlGcG~-G-~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~---l-~~-~~~~fD  163 (191)
                      ..+|+=+|||. | .+...|.+. +  .+|+++|.++..++.+++..         ...+.+|...   + .. .-..+|
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g--~~V~vid~~~~~~~~~~~~g---------~~~~~gd~~~~~~l~~~~~~~~ad  107 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYG--KISLGIEIREEAAQQHRSEG---------RNVISGDATDPDFWERILDTGHVK  107 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHC--SCEEEEESCHHHHHHHHHTT---------CCEEECCTTCHHHHHTBCSCCCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccC--CeEEEEECCHHHHHHHHHCC---------CCEEEcCCCCHHHHHhccCCCCCC
Confidence            45799998863 2 223444455 5  78999999998776664321         3445555432   1 11 124589


Q ss_pred             eEEeCC
Q 029554          164 LAISCL  169 (191)
Q Consensus       164 lVis~~  169 (191)
                      +|+...
T Consensus       108 ~vi~~~  113 (183)
T 3c85_A          108 LVLLAM  113 (183)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            888753

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=80.11  E-value=7.9  Score=28.86  Aligned_cols=75  Identities=16%  Similarity=0.095  Sum_probs=47.1

Q ss_pred             CeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----CC
Q 029554           93 PTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----KE  159 (191)
Q Consensus        93 ~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~~  159 (191)
                      .+||=.|++.|   .+...|.+.+  .+|+.++.++.-++...+....   ...++.++..|+....     +     .-
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   77 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDG--FAVAIADYNDATAKAVASEINQ---AGGHAVAVKVDVSDRDQVFAAVEQARKTL   77 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45777776544   3344555666  7899999998766655444432   2234677778876421     0     01


Q ss_pred             CCcceEEeCCccc
Q 029554          160 SSLDLAISCLGLH  172 (191)
Q Consensus       160 ~~fDlVis~~~l~  172 (191)
                      +.+|++|.+.+..
T Consensus        78 g~id~lv~nAg~~   90 (256)
T 1geg_A           78 GGFDVIVNNAGVA   90 (256)
T ss_dssp             TCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            4689999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	191
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.9
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.89
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.87
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.86
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.85
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.85
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.82
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.79
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.79
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.79
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.78
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.78
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.78
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.77
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.77
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.76
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.75
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.72
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.69
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.68
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.68
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.67
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.66
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.65
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.65
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.64
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.64
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.64
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.63
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.63
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.62
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.62
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.61
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.61
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.6
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.57
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.55
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.54
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.53
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.53
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.52
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.5
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.49
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.44
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.44
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.43
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.41
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.38
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.34
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.32
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.32
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.28
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.27
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.21
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.18
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.12
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.06
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.05
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	99.04
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.01
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.01
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.0
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.0
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.98
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.97
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.95
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.95
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.94
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.88
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.84
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.84
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.83
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.82
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.7
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.65
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.64
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.61
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.57
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.53
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.52
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.45
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.44
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.4
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.38
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.36
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.34
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.32
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.27
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.25
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.99
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.93
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.87
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.66
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.62
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.58
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.57
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.5
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.45
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.19
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.18
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.04
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	96.58
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.15
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.92
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.79
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	95.79
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	95.72
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.61
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.29
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.98
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.94
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.88
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.48
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.1
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.64
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.62
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.53
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.72
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	92.7
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	92.59
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	92.45
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	92.33
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	92.09
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.02
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.86
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.48
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	91.41
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	91.34
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	91.28
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	91.08
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	90.93
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	90.88
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.85
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	90.82
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	90.59
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	90.48
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.45
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	90.24
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.03
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	89.92
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	89.89
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	89.83
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	89.81
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	89.63
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.43
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	89.27
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	89.16
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	89.11
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	88.98
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.83
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	88.54
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	88.41
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	88.16
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	87.92
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	86.88
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	86.69
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	86.63
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	86.62
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	86.04
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	85.81
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	85.56
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	85.56
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	85.12
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	84.43
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	84.39
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	84.26
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	84.14
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	84.1
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	83.91
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	83.64
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	83.56
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	83.43
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	83.23
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	82.9
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	82.89
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	82.81
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	82.07
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	82.05
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	81.25
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	80.42
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	80.39

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=1.3e-23  Score=160.62  Aligned_cols=105  Identities=19%  Similarity=0.249  Sum_probs=94.2

Q ss_pred             HHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCC
Q 029554           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKES  160 (191)
Q Consensus        81 l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~  160 (191)
                      +++.+.  .+++.+|||||||+|.++..+++.+  .+|+|+|+|+.|++.|+++...  ....++.++++|.+.+|++++
T Consensus         8 l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~--~~~~~~~~~~~d~~~~~~~~~   81 (234)
T d1xxla_           8 MIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQE--KGVENVRFQQGTAESLPFPDD   81 (234)
T ss_dssp             HHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHH--HTCCSEEEEECBTTBCCSCTT
T ss_pred             HHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcc--ccccccccccccccccccccc
Confidence            444444  5689999999999999999999987  7999999999999999988765  334569999999999999999


Q ss_pred             CcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          161 SLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       161 ~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +||+|+|..+++|++|+..+++++.++||||
T Consensus        82 ~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg  112 (234)
T d1xxla_          82 SFDIITCRYAAHHFSDVRKAVREVARVLKQD  112 (234)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             ccceeeeeceeecccCHHHHHHHHHHeeCCC
Confidence            9999999999999999999999999999996

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.89  E-value=2.7e-23  Score=157.92  Aligned_cols=106  Identities=16%  Similarity=0.197  Sum_probs=94.6

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE  159 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~  159 (191)
                      ++++.+.  .+++.+|||||||+|.++..+++.+  .+|+|+|+|+.|++.|+++...  ....++.++++|.+.+|+++
T Consensus         6 ~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~--~~~~~i~~~~~d~~~l~~~~   79 (231)
T d1vl5a_           6 KLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEG--NGHQQVEYVQGDAEQMPFTD   79 (231)
T ss_dssp             HHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHH--TTCCSEEEEECCC-CCCSCT
T ss_pred             HHHHhcC--CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccc--cccccccccccccccccccc
Confidence            5565555  5678899999999999999999987  7999999999999999988765  35567999999999999999


Q ss_pred             CCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          160 SSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       160 ~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++||+|+|..++||++|+..+++++.++||||
T Consensus        80 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg  111 (231)
T d1vl5a_          80 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG  111 (231)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred             cccccccccccccccCCHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999996

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=7.1e-22  Score=149.09  Aligned_cols=117  Identities=21%  Similarity=0.245  Sum_probs=94.7

Q ss_pred             CchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEe
Q 029554           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVV  149 (191)
Q Consensus        70 ~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~  149 (191)
                      ...........+...+.....+..+|||||||+|.++..+++.+  .+|+|+|+|+.|++.|+++...   ...++.+++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~--~~v~giD~S~~~i~~ak~~~~~---~~~~~~~~~   90 (226)
T d1ve3a1          16 NSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAREYAKS---RESNVEFIV   90 (226)
T ss_dssp             TSHHHHHHHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCCCEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCcchhhhhHhhhh--cccccccccccchhhhhhhhcc---ccccccccc
Confidence            34443333444443333223467899999999999999999876  8999999999999999988764   334578888


Q ss_pred             cCCCCCCCCCCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          150 GDEEFLPLKESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       150 ~d~~~l~~~~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      .|++.+++++++||+|+|..+++|++  |+..+++++.++||||
T Consensus        91 ~d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~Lkpg  134 (226)
T d1ve3a1          91 GDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPS  134 (226)
T ss_dssp             CCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEE
T ss_pred             cccccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcC
Confidence            99999999999999999999999996  6778999999999996

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=9.4e-22  Score=150.20  Aligned_cols=124  Identities=22%  Similarity=0.286  Sum_probs=94.3

Q ss_pred             HHHHHhhhhcCCC-chHHHHHHHHHHHH-HHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhh
Q 029554           58 KQRDRAAWLTRPN-DSFVDAVAENLLDR-LEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (191)
Q Consensus        58 ~~~~~~a~~y~~~-~~~~~~~~~~l~~~-l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~  135 (191)
                      .+|++.+..|+.. ...........+.. +.....++.+|||+|||+|..+..|++.+  .+|+|+|+|+.|++.|+++.
T Consensus         7 ~~yd~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~   84 (246)
T d2avna1           7 EFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERG--FEVVLVDPSKEMLEVAREKG   84 (246)
T ss_dssp             HHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTT--CEEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCCCCEEEEECCCCchhcccccccc--eEEEEeeccccccccccccc
Confidence            4566677666641 11111112222222 22223467799999999999999999987  89999999999999998865


Q ss_pred             hhccCCCCceeeEecCCCCCCCCCCCcceEEeC-CcccCcCChHHHHHHHHhccCCC
Q 029554          136 QDAHNDNIETCFVVGDEEFLPLKESSLDLAISC-LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       136 ~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~-~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .        ..++.+|++.+++++++||+|+|. .++||++|+..+++++.++||||
T Consensus        85 ~--------~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~g  133 (246)
T d2avna1          85 V--------KNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPD  133 (246)
T ss_dssp             C--------SCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEE
T ss_pred             c--------cccccccccccccccccccceeeecchhhhhhhHHHHHHHHHhhcCcC
Confidence            2        236778999999999999999986 57899999999999999999986

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=3.5e-21  Score=147.90  Aligned_cols=121  Identities=17%  Similarity=0.068  Sum_probs=97.6

Q ss_pred             hcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCce
Q 029554           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET  145 (191)
Q Consensus        66 ~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~  145 (191)
                      .++..+....+....+.+.+.  ..++.+|||||||+|..+..+++..+ .+|+|+|+|+.|++.++++... .....++
T Consensus        10 ~h~~~~p~~~~~~~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~-~gl~~~v   85 (245)
T d1nkva_          10 EHRIHNPFTEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEE-LGVSERV   85 (245)
T ss_dssp             SCSSSSSCCHHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHH-TTCTTTE
T ss_pred             hccccCCCCHHHHHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHH-hhccccc
Confidence            334333344444555555555  45788999999999999999987643 7899999999999999988765 1234568


Q ss_pred             eeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          146 CFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       146 ~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .++++|++.+. ++++||+|+|..+++|+.|+..+++++.++||||
T Consensus        86 ~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPG  130 (245)
T d1nkva_          86 HFIHNDAAGYV-ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG  130 (245)
T ss_dssp             EEEESCCTTCC-CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE
T ss_pred             hhhhhHHhhcc-ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcC
Confidence            99999998874 6789999999999999999999999999999996

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.85  E-value=4.1e-21  Score=150.41  Aligned_cols=100  Identities=14%  Similarity=0.058  Sum_probs=89.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      .++.+|||||||+|..+..|++.+ ..+|+|+|+|+.|++.++++... .+...++.+.++|++.+|+++++||+|+|..
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~-~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~  143 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQ-AGLADNITVKYGSFLEIPCEDNSYDFIWSQD  143 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHH-HTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccc-ccccccccccccccccccccccccchhhccc
Confidence            467899999999999999998763 27899999999999999988754 1234579999999999999999999999999


Q ss_pred             cccCcCChHHHHHHHHhccCCC
Q 029554          170 GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++|++|+..+++++.++||||
T Consensus       144 ~l~h~~d~~~~l~~~~~~Lkpg  165 (282)
T d2o57a1         144 AFLHSPDKLKVFQECARVLKPR  165 (282)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEE
T ss_pred             hhhhccCHHHHHHHHHHhcCCC
Confidence            9999999999999999999996

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=8.4e-21  Score=142.05  Aligned_cols=86  Identities=20%  Similarity=0.236  Sum_probs=77.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      +..+|||||||+|.++..+.      +++|+|+|+.|++.++++         ++.++++|++.+++++++||+|+|+.+
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~---------~~~~~~~d~~~l~~~~~~fD~I~~~~~  100 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR---------GVFVLKGTAENLPLKDESFDFALMVTT  100 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT---------TCEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc---------ccccccccccccccccccccccccccc
Confidence            55689999999999988773      468999999999999764         278899999999999999999999999


Q ss_pred             ccCcCChHHHHHHHHhccCCC
Q 029554          171 LHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |+|++|+..+++++.++|+||
T Consensus       101 l~h~~d~~~~l~~~~~~L~pg  121 (208)
T d1vlma_         101 ICFVDDPERALKEAYRILKKG  121 (208)
T ss_dssp             GGGSSCHHHHHHHHHHHEEEE
T ss_pred             cccccccccchhhhhhcCCCC
Confidence            999999999999999999986

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.79  E-value=1.6e-18  Score=131.21  Aligned_cols=112  Identities=17%  Similarity=0.132  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc--CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR--GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      +.+.+...+.....++.+|||||||+|..+..|++.  .+..+|+|+|+|+.|++.|+++... .+....+.+...|...
T Consensus        25 ~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~-~~~~~~~~~~~~d~~~  103 (225)
T d1im8a_          25 IITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA-YHSEIPVEILCNDIRH  103 (225)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHT-SCCSSCEEEECSCTTT
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHh-hcccchhhhccchhhc
Confidence            333333333333457889999999999999988864  3568999999999999999998754 1234456667777666


Q ss_pred             CCCCCCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          155 LPLKESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 l~~~~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      .+  ...+|+|+++.++||++  |+..+++++.++||||
T Consensus       104 ~~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg  140 (225)
T d1im8a_         104 VE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPN  140 (225)
T ss_dssp             CC--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEE
T ss_pred             cc--cccceeeEEeeeccccChhhHHHHHHHHHHhCCCC
Confidence            54  46799999999999984  7889999999999996

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.79  E-value=3e-19  Score=139.80  Aligned_cols=98  Identities=13%  Similarity=0.030  Sum_probs=86.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..+.+|||+|||+|.++..+++..+ ..+|+|+|+|+.|++.|+++...   ...++.+.+.|++.++++ ++||+|+|+
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~---~~~~~~f~~~d~~~~~~~-~~fD~v~~~  101 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL---LPYDSEFLEGDATEIELN-DKYDIAICH  101 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHS---SSSEEEEEESCTTTCCCS-SCEEEEEEE
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccc---cccccccccccccccccc-CCceEEEEe
Confidence            3567899999999999999988754 37899999999999999988764   344789999999988875 579999999


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .++||++|+..+++++.++||||
T Consensus       102 ~~l~~~~d~~~~l~~~~~~Lkpg  124 (281)
T d2gh1a1         102 AFLLHMTTPETMLQKMIHSVKKG  124 (281)
T ss_dssp             SCGGGCSSHHHHHHHHHHTEEEE
T ss_pred             hhhhcCCCHHHHHHHHHHHcCcC
Confidence            99999999999999999999996

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-19  Score=137.22  Aligned_cols=98  Identities=14%  Similarity=0.068  Sum_probs=84.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      +..+|||||||+|.++..+...+ ..+|+|+|+|+.|++.|+++...  ....++.++++|++.+++++++||+|++..+
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~--~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~  136 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGE--EGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV  136 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGG--GGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhcccccccc--ccccccccccccccccccccccccccccccc
Confidence            45689999999999999876554 26899999999999999998764  2345679999999999988899999999999


Q ss_pred             ccCcCCh--HHHHHHHHhccCCC
Q 029554          171 LHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      +||+++.  ..++.++.++||||
T Consensus       137 l~h~~~~~~~~~l~~i~~~Lk~~  159 (222)
T d2ex4a1         137 IGHLTDQHLAEFLRRCKGSLRPN  159 (222)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             cccchhhhhhhHHHHHHHhcCCc
Confidence            9999865  47999999999985

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.78  E-value=2.7e-19  Score=137.14  Aligned_cols=108  Identities=17%  Similarity=0.189  Sum_probs=86.8

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~  157 (191)
                      ...+...+.....++.+|||+|||+|..+..|++.+  .+|+|+|+|+.|++.|+++...   ...++.++++|+..+++
T Consensus        24 ~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~---~~~~v~~~~~d~~~~~~   98 (246)
T d1y8ca_          24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRS---QGLKPRLACQDISNLNI   98 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHH---TTCCCEEECCCGGGCCC
T ss_pred             HHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccc---cCccceeeccchhhhcc
Confidence            334444444323356789999999999999999988  7999999999999999988764   34468999999988875


Q ss_pred             CCCCcceEEeC-CcccCcC---ChHHHHHHHHhccCCC
Q 029554          158 KESSLDLAISC-LGLHWTN---DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       158 ~~~~fDlVis~-~~l~~~~---d~~~~l~~i~r~Lkpg  191 (191)
                      + ++||+|+|. .+++|+.   ++..+++++.++||||
T Consensus        99 ~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  135 (246)
T d1y8ca_          99 N-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG  135 (246)
T ss_dssp             S-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE
T ss_pred             c-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCC
Confidence            4 689999986 5677765   5667999999999986

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.78  E-value=1e-18  Score=129.93  Aligned_cols=96  Identities=14%  Similarity=0.119  Sum_probs=83.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      .+++|||||||+|.++..+++++  .+|+++|+|+.|++.++++...  ....++.+...|+..+++ +++||+|+++.+
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~  104 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAA--EGLDNLQTDLVDLNTLTF-DGEYDFILSTVV  104 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH--TTCTTEEEEECCTTTCCC-CCCEEEEEEESC
T ss_pred             CCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhh--ccccchhhhheecccccc-cccccEEEEeee
Confidence            45699999999999999999988  8999999999999999887765  344568899999988875 578999999999


Q ss_pred             ccCcCC--hHHHHHHHHhccCCC
Q 029554          171 LHWTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d--~~~~l~~i~r~Lkpg  191 (191)
                      +||+++  ...+++++.++|+||
T Consensus       105 ~~~~~~~~~~~~l~~~~~~L~pg  127 (198)
T d2i6ga1         105 MMFLEAQTIPGLIANMQRCTKPG  127 (198)
T ss_dssp             GGGSCTTHHHHHHHHHHHTEEEE
T ss_pred             eecCCHHHHHHHHHHHHHHcCCC
Confidence            999964  457999999999985

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.78  E-value=7.3e-19  Score=133.23  Aligned_cols=92  Identities=12%  Similarity=0.060  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      .+.+|||||||+|.++..+++.+  .+|+|+|+|+.+++.++++..      .++.++.++++..++ +++||+|++..+
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~------~~~~~~~~~~~~~~~-~~~fD~I~~~~v   90 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK------DGITYIHSRFEDAQL-PRRYDNIVLTHV   90 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC------SCEEEEESCGGGCCC-SSCEEEEEEESC
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccc------ccccccccccccccc-ccccccccccce
Confidence            46689999999999999999887  789999999999999987652      248889999888775 578999999999


Q ss_pred             ccCcCChHHHHHHHH-hccCCC
Q 029554          171 LHWTNDLPGAMIQVS-IFLLPD  191 (191)
Q Consensus       171 l~~~~d~~~~l~~i~-r~Lkpg  191 (191)
                      |+|++|+..++.++. ++|+||
T Consensus        91 leh~~d~~~~l~~i~~~~Lk~g  112 (225)
T d2p7ia1          91 LEHIDDPVALLKRINDDWLAEG  112 (225)
T ss_dssp             GGGCSSHHHHHHHHHHTTEEEE
T ss_pred             eEecCCHHHHHHHHHHHhcCCC
Confidence            999999999999998 789986

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=5.8e-19  Score=135.25  Aligned_cols=97  Identities=20%  Similarity=0.292  Sum_probs=83.1

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..+..+|||+|||+|..+..|++.+  .+|+|+|+|+.|++.|+++...   ...++.+.++|++.++++ ++||+|+|.
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~---~~~~i~~~~~d~~~l~~~-~~fD~I~~~  112 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKE---RNLKIEFLQGDVLEIAFK-NEFDAVTMF  112 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCCCEEEESCGGGCCCC-SCEEEEEEC
T ss_pred             CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeecccccccccccccc---ccccchheehhhhhcccc-cccchHhhh
Confidence            3456689999999999999999987  7999999999999999998764   344689999999999876 589999997


Q ss_pred             C-cccCc--CChHHHHHHHHhccCCC
Q 029554          169 L-GLHWT--NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~-~l~~~--~d~~~~l~~i~r~Lkpg  191 (191)
                      + +++|+  ++...+|+++.++||||
T Consensus       113 ~~~~~~~~~~~~~~~L~~~~~~Lkpg  138 (251)
T d1wzna1         113 FSTIMYFDEEDLRKLFSKVAEALKPG  138 (251)
T ss_dssp             SSGGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             hhhhhcCChHHHHHHHHHHHHHcCCC
Confidence            4 66776  35678999999999986

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.77  E-value=4.6e-19  Score=136.88  Aligned_cols=97  Identities=15%  Similarity=0.127  Sum_probs=83.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      ....+|||+|||+|.++..|+..+ ..+|+++|+|+.|++.|+++..    ....+.+.++|++.+++++++||+|++..
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~----~~~~~~~~~~d~~~~~~~~~~fD~I~~~~  166 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELA----GMPVGKFILASMETATLPPNTYDLIVIQW  166 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTT----TSSEEEEEESCGGGCCCCSSCEEEEEEES
T ss_pred             CCCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhcccc----ccccceeEEccccccccCCCccceEEeec
Confidence            456799999999999998876543 2689999999999999998764    33458899999999998889999999999


Q ss_pred             cccCcCCh--HHHHHHHHhccCCC
Q 029554          170 GLHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      ++||++|.  ..+|+++.++|+||
T Consensus       167 vl~hl~d~d~~~~l~~~~~~Lkpg  190 (254)
T d1xtpa_         167 TAIYLTDADFVKFFKHCQQALTPN  190 (254)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             cccccchhhhHHHHHHHHHhcCCC
Confidence            99999765  47899999999985

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=4.2e-18  Score=132.38  Aligned_cols=89  Identities=15%  Similarity=0.116  Sum_probs=79.4

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ...+.+|||+|||+|..+..+++.++..+++|+|+|+.|++.|+++..       ++.+.++|.+.+|+++++||+|++.
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~-------~~~~~~~d~~~l~~~~~sfD~v~~~  154 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP-------QVTFCVASSHRLPFSDTSMDAIIRI  154 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT-------TSEEEECCTTSCSBCTTCEEEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc-------cccceeeehhhccCCCCCEEEEeec
Confidence            346679999999999999999998888899999999999999987653       3889999999999999999999999


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++++|       ++++.|+||||
T Consensus       155 ~~~~~-------~~e~~rvLkpg  170 (268)
T d1p91a_         155 YAPCK-------AEELARVVKPG  170 (268)
T ss_dssp             SCCCC-------HHHHHHHEEEE
T ss_pred             CCHHH-------HHHHHHHhCCC
Confidence            98887       47899999986

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.75  E-value=2e-18  Score=132.84  Aligned_cols=101  Identities=16%  Similarity=0.106  Sum_probs=83.2

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC-CCCCcceEEe
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-KESSLDLAIS  167 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~fDlVis  167 (191)
                      ..++.+|||||||+|..+..+.+.+ ..+|+|+|+|+.|++.|+++... .....++.+.++|....++ .+++||+|+|
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~-~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~   99 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARN-MKRRFKVFFRAQDSYGRHMDLGKEFDVISS   99 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHT-SCCSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHh-cCCCcceEEEEcchhhhcccccccceEEEE
Confidence            3467899999999999988887754 36899999999999999988754 1234578999999876654 4678999999


Q ss_pred             CCcccCcC----ChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTN----DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~----d~~~~l~~i~r~Lkpg  191 (191)
                      .+++||+.    +...++.++.++||||
T Consensus       100 ~~~l~~~~~~~~~~~~~l~~i~~~Lk~g  127 (252)
T d1ri5a_         100 QFSFHYAFSTSESLDIAQRNIARHLRPG  127 (252)
T ss_dssp             ESCGGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred             cceeeecCCCHHHHHHHHHHHhceeCCC
Confidence            99999973    3457899999999986

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.72  E-value=4.2e-18  Score=125.35  Aligned_cols=101  Identities=8%  Similarity=-0.087  Sum_probs=83.7

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC----------CCCceeeEecCCCCCC-C
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN----------DNIETCFVVGDEEFLP-L  157 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~----------~~~~~~~~~~d~~~l~-~  157 (191)
                      ..++.+|||+|||+|.++..|++.|  .+|+|+|+|+.|++.|+++......          ......+.++|...++ .
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~   95 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQG--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   95 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHcC--CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence            4578899999999999999999988  8999999999999999998743110          1234578888887765 3


Q ss_pred             CCCCcceEEeCCcccCcCC--hHHHHHHHHhccCCC
Q 029554          158 KESSLDLAISCLGLHWTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~d--~~~~l~~i~r~Lkpg  191 (191)
                      ....||+|++..+++|+.+  ....++++.++||||
T Consensus        96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkpg  131 (201)
T d1pjza_          96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA  131 (201)
T ss_dssp             HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE
T ss_pred             cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCC
Confidence            3468999999999999964  578999999999996

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=1e-16  Score=125.13  Aligned_cols=108  Identities=16%  Similarity=0.092  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~  156 (191)
                      ..+.+++.+.  ..++.+|||||||.|.++..+++..+ ++|+|+|+|+.+++.++++..+. +....+.+...|...+ 
T Consensus        40 k~~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~-~l~~~~~~~~~d~~~~-  114 (280)
T d2fk8a1          40 KVDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASI-DTNRSRQVLLQGWEDF-  114 (280)
T ss_dssp             HHHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTS-CCSSCEEEEESCGGGC-
T ss_pred             HHHHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhh-ccccchhhhhhhhhhh-
Confidence            3445555554  56889999999999999998887642 79999999999999999988652 2234566666676555 


Q ss_pred             CCCCCcceEEeCCcccCcCC--hHHHHHHHHhccCCC
Q 029554          157 LKESSLDLAISCLGLHWTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~~~~d--~~~~l~~i~r~Lkpg  191 (191)
                        +++||.|+|..+++|+.+  ...+++++.++||||
T Consensus       115 --~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg  149 (280)
T d2fk8a1         115 --AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD  149 (280)
T ss_dssp             --CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT
T ss_pred             --ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC
Confidence              368999999999999964  489999999999997

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.68  E-value=1e-16  Score=118.62  Aligned_cols=106  Identities=16%  Similarity=0.119  Sum_probs=86.2

Q ss_pred             HHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCC
Q 029554           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKES  160 (191)
Q Consensus        81 l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~  160 (191)
                      +++.+.  ..++.+|||+|||+|.++..++..+  .+|+++|+|+.+++.+++++...+-...++.+..+|... +++++
T Consensus        44 Li~~l~--~~~~~~VLDiGcG~G~~~~~la~~~--~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~  118 (194)
T d1dusa_          44 LVENVV--VDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDR  118 (194)
T ss_dssp             HHHHCC--CCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTS
T ss_pred             HHHhCC--cCCCCeEEEEeecCChhHHHHHhhc--cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccC
Confidence            444444  4577899999999999999999877  799999999999999998876522233468889999765 45678


Q ss_pred             CcceEEeCCcccCcCCh-HHHHHHHHhccCCC
Q 029554          161 SLDLAISCLGLHWTNDL-PGAMIQVSIFLLPD  191 (191)
Q Consensus       161 ~fDlVis~~~l~~~~d~-~~~l~~i~r~Lkpg  191 (191)
                      +||+|+++..+|+..+. ..++.++.++|+||
T Consensus       119 ~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lkpg  150 (194)
T d1dusa_         119 KYNKIITNPPIRAGKEVLHRIIEEGKELLKDN  150 (194)
T ss_dssp             CEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE
T ss_pred             CceEEEEcccEEecchhhhhHHHHHHHhcCcC
Confidence            99999999998887654 67899999999985

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.68  E-value=6.1e-17  Score=119.18  Aligned_cols=109  Identities=17%  Similarity=0.082  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      .++...++..+.  ..++.+|||+|||+|.++..++..+  .+|+++|+++.+++.++++++. .+...+++++++|...
T Consensus        19 ~eir~~il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~-~gl~~~v~~~~gda~~   93 (186)
T d1l3ia_          19 MEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQR-HGLGDNVTLMEGDAPE   93 (186)
T ss_dssp             HHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHH-TTCCTTEEEEESCHHH
T ss_pred             HHHHHHHHHhcC--CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHH-cCCCcceEEEECchhh
Confidence            455556666665  6688999999999999999998876  7999999999999999999876 1233579999999877


Q ss_pred             CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          155 LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .+.+...||+|+++...++   ....+..+.++||||
T Consensus        94 ~~~~~~~~D~v~~~~~~~~---~~~~~~~~~~~Lkpg  127 (186)
T d1l3ia_          94 ALCKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPG  127 (186)
T ss_dssp             HHTTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEE
T ss_pred             cccccCCcCEEEEeCcccc---chHHHHHHHHHhCcC
Confidence            6666789999999887654   578899999999985

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.67  E-value=2.6e-16  Score=123.37  Aligned_cols=111  Identities=14%  Similarity=0.008  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~  153 (191)
                      +....+.+++.+.  ..++.+|||||||.|.++..+++..+ ++|+|+++|+.+++.++++.... +....+.+...|..
T Consensus        46 q~~k~~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~-~l~~~v~~~~~d~~  121 (291)
T d1kpia_          46 QYAKRKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEV-DSPRRKEVRIQGWE  121 (291)
T ss_dssp             HHHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHS-CCSSCEEEEECCGG
T ss_pred             HHHHHHHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhh-ccchhhhhhhhccc
Confidence            3344556666665  56889999999999999998886643 79999999999999999887652 23445677666653


Q ss_pred             CCCCCCCCcceEEeCCcccCcCC---------hHHHHHHHHhccCCC
Q 029554          154 FLPLKESSLDLAISCLGLHWTND---------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       154 ~l~~~~~~fDlVis~~~l~~~~d---------~~~~l~~i~r~Lkpg  191 (191)
                         +.+++||.|+|..++.|+.+         ...+++++.++||||
T Consensus       122 ---~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg  165 (291)
T d1kpia_         122 ---EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD  165 (291)
T ss_dssp             ---GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT
T ss_pred             ---ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC
Confidence               34688999999999999976         478999999999997

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.7e-16  Score=118.42  Aligned_cols=101  Identities=12%  Similarity=-0.058  Sum_probs=83.9

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc---------------CCCCceeeEecCCC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH---------------NDNIETCFVVGDEE  153 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~---------------~~~~~~~~~~~d~~  153 (191)
                      ..++.+|||+|||+|..+..|++.|  .+|+|+|+|+.+++.++++.....               ....++.+.++|+.
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~G--~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADRG--HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTT--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            3467799999999999999999988  899999999999999988754200               12346888999977


Q ss_pred             CCC-CCCCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          154 FLP-LKESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       154 ~l~-~~~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      .++ ...+.||+|+...++||++  +....++++.++||||
T Consensus       121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg  161 (229)
T d2bzga1         121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK  161 (229)
T ss_dssp             GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE
T ss_pred             hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc
Confidence            653 5568999999999999984  6678999999999996

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.8e-16  Score=123.42  Aligned_cols=100  Identities=12%  Similarity=0.121  Sum_probs=75.7

Q ss_pred             CCeEEEEcCCccHHHHHHhhc----CC--CceEEEEECChhHHHHHHHhhhhccC-CCCceeeEecCCC------CCCCC
Q 029554           92 FPTALCLGGSLEAVRRLLRGR----GG--IEKLIMMDTSYDMLKLCKDAQQDAHN-DNIETCFVVGDEE------FLPLK  158 (191)
Q Consensus        92 ~~~VLDlGcG~G~~~~~l~~~----~~--~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~~~~d~~------~l~~~  158 (191)
                      ..+|||||||+|.++..+++.    ++  ...++++|+|+.|++.++++...... ...+..+...+.+      ..+.+
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence            337999999999987776542    22  35789999999999999988754111 1122344444433      23456


Q ss_pred             CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++||+|++..++||++|+..+++++.++|+||
T Consensus       121 ~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkpg  153 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN  153 (280)
T ss_dssp             CCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE
T ss_pred             CCceeEEEEccceecCCCHHHHHHHHHhhCCCC
Confidence            789999999999999999999999999999986

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=5.4e-16  Score=121.20  Aligned_cols=111  Identities=12%  Similarity=-0.009  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~  153 (191)
                      +....+.+++++.  ..++.+|||||||.|..+..+++.. .++|+|+++|+..++.++++..+ .+...++.+...|..
T Consensus        47 Q~~k~~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~-~g~~~~v~~~~~d~~  122 (285)
T d1kpga_          47 QIAKIDLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVAN-SENLRSKRVLLAGWE  122 (285)
T ss_dssp             HHHHHHHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHT-CCCCSCEEEEESCGG
T ss_pred             HHHHHHHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHh-hhhhhhhHHHHhhhh
Confidence            3344555666665  5688999999999999999887764 38999999999999999988754 234567889999987


Q ss_pred             CCCCCCCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554          154 FLPLKESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       154 ~l~~~~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg  191 (191)
                      .++   ++||.|+|..++.|+.  +...+++++.++||||
T Consensus       123 ~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg  159 (285)
T d1kpga_         123 QFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD  159 (285)
T ss_dssp             GCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT
T ss_pred             ccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCC
Confidence            764   6899999999999994  5589999999999997

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.64  E-value=1.3e-16  Score=121.19  Aligned_cols=122  Identities=12%  Similarity=0.052  Sum_probs=96.3

Q ss_pred             hcCCCchHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCc
Q 029554           66 LTRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE  144 (191)
Q Consensus        66 ~y~~~~~~~~~~~~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~  144 (191)
                      .|+.++..++.++..+...+..+ ..++.+|||+|||+|..+..+++.+|...|+|+|+|+.|++.++++...    ..+
T Consensus        48 e~r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~----~~n  123 (230)
T d1g8sa_          48 EYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE----REN  123 (230)
T ss_dssp             EEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT----CTT
T ss_pred             eeeeECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh----hcc
Confidence            46666666667766666544433 3578899999999999999999988888999999999999999887643    345


Q ss_pred             eeeEecCCCC-CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          145 TCFVVGDEEF-LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       145 ~~~~~~d~~~-l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +..+..|... .++.+..+|++++...++|.++...++.++.++||||
T Consensus       124 i~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpg  171 (230)
T d1g8sa_         124 IIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKG  171 (230)
T ss_dssp             EEEEECCTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEE
T ss_pred             cceEEEeeccCcccccccceeEEeeccccchHHHHHHHHHHHHhcccC
Confidence            6667777553 3355667888888888888989999999999999986

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=6.9e-16  Score=120.89  Aligned_cols=107  Identities=16%  Similarity=0.119  Sum_probs=76.9

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC--CceeeEecCCCC---
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEF---  154 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~--~~~~~~~~d~~~---  154 (191)
                      .+.+.+.  .....+|||+|||+|..+..|++.+  .+|+|+|+|+.|++.|+++........  ....+...+...   
T Consensus        47 ~l~~~l~--~~~~~~vLD~GcG~G~~~~~la~~g--~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (292)
T d1xvaa_          47 WLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK  122 (292)
T ss_dssp             HHHHHHH--HTTCCEEEESSCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred             HHHHHhh--hcCCCEEEEecCCCcHHHHHHHHcC--CeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc
Confidence            3444444  3456799999999999999999987  799999999999999988765411111  112233333322   


Q ss_pred             -CCCCCCCcceEEeC-CcccCcCC-------hHHHHHHHHhccCCC
Q 029554          155 -LPLKESSLDLAISC-LGLHWTND-------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       155 -l~~~~~~fDlVis~-~~l~~~~d-------~~~~l~~i~r~Lkpg  191 (191)
                       +| ...+||+|+|. .+++|+.+       ...+|+++.++||||
T Consensus       123 ~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  167 (292)
T d1xvaa_         123 DVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG  167 (292)
T ss_dssp             HSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE
T ss_pred             ccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC
Confidence             23 34679999986 47888754       557999999999996

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.64  E-value=4.6e-16  Score=116.04  Aligned_cols=99  Identities=7%  Similarity=0.038  Sum_probs=87.3

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlVis~  168 (191)
                      ....|||||||+|..+..+++..|...++|+|+++.++..+.++...  ....++.++.+|+..+.  ++++++|.|+++
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~--~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~  106 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD--SEAQNVKLLNIDADTLTDVFEPGEVKRVYLN  106 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH--SCCSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHH--HhccCchhcccchhhhhcccCchhhhccccc
Confidence            45679999999999999999999999999999999999999988865  45568999999987654  788999999999


Q ss_pred             CcccCcCCh--------HHHHHHHHhccCCC
Q 029554          169 LGLHWTNDL--------PGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~--------~~~l~~i~r~Lkpg  191 (191)
                      +...|....        ..++.++.++||||
T Consensus       107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg  137 (204)
T d2fcaa1         107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG  137 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred             cccccchhhhcchhhhHHHHHHHHHHhCCCC
Confidence            999887654        57999999999997

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.1e-16  Score=119.87  Aligned_cols=98  Identities=11%  Similarity=0.036  Sum_probs=80.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC--CCCCCCCCcceEE-
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE--FLPLKESSLDLAI-  166 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~--~l~~~~~~fDlVi-  166 (191)
                      .++.+|||||||+|..+..+++.. ..+++++|+|+.+++.|+++...   ...++.++..+..  ..++++++||.|+ 
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~fD~i~f  127 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPR---QTHKVIPLKGLWEDVAPTLPDGHFDGILY  127 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGG---CSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             cCCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhh---cccccccccccccccccccccccccceee
Confidence            467799999999999999998764 36899999999999999998764   3445666766644  3356778888887 


Q ss_pred             ----eCCcccCcCChHHHHHHHHhccCCC
Q 029554          167 ----SCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 ----s~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                          +...++|+.++..+++++.|+||||
T Consensus       128 D~~~~~~~~~~~~~~~~~~~~~~r~LkpG  156 (229)
T d1zx0a1         128 DTYPLSEETWHTHQFNFIKNHAFRLLKPG  156 (229)
T ss_dssp             CCCCCBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred             cccccccccccccCHHHHHHHHHHHcCCC
Confidence                5667888889999999999999996

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=5.2e-16  Score=116.56  Aligned_cols=107  Identities=13%  Similarity=0.112  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~  153 (191)
                      ..+...+++.+.  ..++.+|||+|||+|+.+..+++. ++...|+++|+++.+++.++++...  ....++.+.++|..
T Consensus        61 P~~~a~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~--~~~~n~~~~~~d~~  136 (213)
T d1dl5a1          61 PSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER--LGIENVIFVCGDGY  136 (213)
T ss_dssp             HHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH--TTCCSEEEEESCGG
T ss_pred             chhhHHHHHhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhh--hcccccccccCchH
Confidence            445556777776  568899999999999999999875 4557899999999999999998875  34567888889987


Q ss_pred             CCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          154 FLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       154 ~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ...+.+++||.|+++.+++++++      ++.+.||||
T Consensus       137 ~~~~~~~~fD~I~~~~~~~~~p~------~l~~~LkpG  168 (213)
T d1dl5a1         137 YGVPEFSPYDVIFVTVGVDEVPE------TWFTQLKEG  168 (213)
T ss_dssp             GCCGGGCCEEEEEECSBBSCCCH------HHHHHEEEE
T ss_pred             HccccccchhhhhhhccHHHhHH------HHHHhcCCC
Confidence            76667789999999999998853      466778875

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=2.7e-16  Score=120.97  Aligned_cols=103  Identities=17%  Similarity=0.132  Sum_probs=81.2

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE  159 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~  159 (191)
                      -+++.+.....++.+|||+|||+|.++..+++.+  .+|+|+|+|+.|++.|+++...   ...+..+.++|.... ++.
T Consensus       109 l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g--~~V~gvDis~~av~~A~~na~~---n~~~~~~~~~d~~~~-~~~  182 (254)
T d2nxca1         109 LALKALARHLRPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKR---NGVRPRFLEGSLEAA-LPF  182 (254)
T ss_dssp             HHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHH---TTCCCEEEESCHHHH-GGG
T ss_pred             HHHHHHHhhcCccCEEEEcccchhHHHHHHHhcC--CEEEEEECChHHHHHHHHHHHH---cCCceeEEecccccc-ccc
Confidence            3444444445688999999999999999998877  7899999999999999998865   233467788886542 356


Q ss_pred             CCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          160 SSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       160 ~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++||+|++|...+.   +...+.++.++||||
T Consensus       183 ~~fD~V~ani~~~~---l~~l~~~~~~~LkpG  211 (254)
T d2nxca1         183 GPFDLLVANLYAEL---HAALAPRYREALVPG  211 (254)
T ss_dssp             CCEEEEEEECCHHH---HHHHHHHHHHHEEEE
T ss_pred             cccchhhhcccccc---HHHHHHHHHHhcCCC
Confidence            78999999866553   467888999999986

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.62  E-value=1e-15  Score=117.67  Aligned_cols=106  Identities=14%  Similarity=0.050  Sum_probs=84.8

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE  159 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~  159 (191)
                      .+++.+.  .....+|||||||+|.++..+++.+|..+++++|+ +.+++.++++... .+...++.++.+|+... . .
T Consensus        71 ~~~~~~d--~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~-~~~~~rv~~~~~D~~~~-~-~  144 (253)
T d1tw3a2          71 APAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKD-EGLSDRVDVVEGDFFEP-L-P  144 (253)
T ss_dssp             HHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHH-TTCTTTEEEEECCTTSC-C-S
T ss_pred             HHHhhcC--CccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHH-hhcccchhhccccchhh-c-c
Confidence            4444443  23557899999999999999999998899999998 6789999887765 23446799999997542 2 2


Q ss_pred             CCcceEEeCCcccCcCCh--HHHHHHHHhccCCC
Q 029554          160 SSLDLAISCLGLHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       160 ~~fDlVis~~~l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      .+||+|+++.+|||++|.  ..+|++++++||||
T Consensus       145 ~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPG  178 (253)
T d1tw3a2         145 RKADAIILSFVLLNWPDHDAVRILTRCAEALEPG  178 (253)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE
T ss_pred             cchhheeeccccccCCchhhHHHHHHHHHhcCCC
Confidence            569999999999999765  46799999999996

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.61  E-value=3.2e-16  Score=117.40  Aligned_cols=121  Identities=10%  Similarity=-0.048  Sum_probs=87.2

Q ss_pred             cCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCcee
Q 029554           67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC  146 (191)
Q Consensus        67 y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~  146 (191)
                      |+.++..+..++..++........|+.+|||+|||+|..+..+++..+..+|+|+|+|+.|++.++++...    ..++.
T Consensus        32 ~r~w~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~----~~ni~  107 (209)
T d1nt2a_          32 YREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE----RNNII  107 (209)
T ss_dssp             EEECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH----CSSEE
T ss_pred             eeeeCCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc----cCCce
Confidence            33444444445444443211124688999999999999999999887777999999999999999988754    24688


Q ss_pred             eEecCCCCCCCCCCCcceEEe-CCcccCcCChHHHHHHHHhccCCC
Q 029554          147 FVVGDEEFLPLKESSLDLAIS-CLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       147 ~~~~d~~~l~~~~~~fDlVis-~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++..|....+.....+|.|.. ...++|..+...++.++.++||||
T Consensus       108 ~i~~d~~~~~~~~~~~~~vd~v~~~~~~~~~~~~~l~~~~~~Lkpg  153 (209)
T d1nt2a_         108 PLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEK  153 (209)
T ss_dssp             EECSCTTCGGGTTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEE
T ss_pred             EEEeeccCccccccccceEEEEEecccChhhHHHHHHHHHHHhccC
Confidence            888887765444444444432 234667778889999999999986

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=9.2e-16  Score=118.35  Aligned_cols=107  Identities=17%  Similarity=0.052  Sum_probs=90.8

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhc-cCCCCceeeEecCCCCC
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDA-HNDNIETCFVVGDEEFL  155 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~-~~~~~~~~~~~~d~~~l  155 (191)
                      +..++..+.  ..|+.+|||+|||+|.++..|+.. +|..+|+++|+++++++.|+++++.. .....++.+.++|....
T Consensus        85 ~s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~  162 (264)
T d1i9ga_          85 AAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS  162 (264)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred             HHHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence            345665655  568999999999999999999876 67789999999999999999987652 23356799999999888


Q ss_pred             CCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          156 PLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       156 ~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++++++||.|++     +++|+..++.++.++||||
T Consensus       163 ~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpG  193 (264)
T d1i9ga_         163 ELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAG  193 (264)
T ss_dssp             CCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEE
T ss_pred             cccCCCcceEEE-----ecCCHHHHHHHHHhccCCC
Confidence            888999999986     5789999999999999996

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.5e-16  Score=120.65  Aligned_cols=101  Identities=10%  Similarity=0.033  Sum_probs=73.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCc-------------------------
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE-------------------------  144 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~-------------------------  144 (191)
                      .++.+|||||||+|..+..++..+ ..+|+|+|+|+.|++.|+++..........                         
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            355689999999999887776654 368999999999999999887531110000                         


Q ss_pred             --e-eeEe----cCCCCCCCCCCCcceEEeCCcccCcC----ChHHHHHHHHhccCCC
Q 029554          145 --T-CFVV----GDEEFLPLKESSLDLAISCLGLHWTN----DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       145 --~-~~~~----~d~~~l~~~~~~fDlVis~~~l~~~~----d~~~~l~~i~r~Lkpg  191 (191)
                        + ....    .+....+++.++||+|++.+++||+.    ++..+++++.++||||
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpG  186 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPG  186 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCC
Confidence              0 0111    12223456788999999999999984    5678999999999996

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.57  E-value=1e-14  Score=108.65  Aligned_cols=99  Identities=12%  Similarity=0.068  Sum_probs=85.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlVis~  168 (191)
                      ....|||||||+|..+..++...|...++|+|+++.++..+.++...  ....++.++.+|+..+.  ++++++|.|+++
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~--~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~  108 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE--VGVPNIKLLWVDGSDLTDYFEDGEIDRLYLN  108 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--HCCSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhh--hccccceeeecCHHHHhhhccCCceehhccc
Confidence            44579999999999999999999999999999999999999888765  34567999999987654  678999999999


Q ss_pred             CcccCcCCh--------HHHHHHHHhccCCC
Q 029554          169 LGLHWTNDL--------PGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~--------~~~l~~i~r~Lkpg  191 (191)
                      +.-.|....        ..++..+.++||||
T Consensus       109 fPdPw~K~~h~krRl~~~~~l~~~~~~Lkpg  139 (204)
T d1yzha1         109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPEN  139 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT
T ss_pred             ccccccchhhhhhhhhHHHHHHHHHHhCCCC
Confidence            888776543        68999999999997

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.4e-15  Score=118.92  Aligned_cols=113  Identities=8%  Similarity=0.038  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh-------ccCCCCceeeE
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD-------AHNDNIETCFV  148 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~~~~~~~~~~  148 (191)
                      ....++++.+.  ..++.+|||+|||+|..+..++...+..+++|+|+|+.+++.|++...+       ++....++.++
T Consensus       138 ~~~~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~  215 (328)
T d1nw3a_         138 DLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE  215 (328)
T ss_dssp             HHHHHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEE
T ss_pred             HHHHHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEE
Confidence            34455666654  4578899999999999999998877778999999999999999876543       22344579999


Q ss_pred             ecCCCCCCCCCCCc--ceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          149 VGDEEFLPLKESSL--DLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       149 ~~d~~~l~~~~~~f--DlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++|+...++.+..+  |+|+++ .+.|.+++...+.++.++||||
T Consensus       216 ~gd~~~~~~~~~~~~advi~~~-~~~f~~~~~~~l~e~~r~LKpG  259 (328)
T d1nw3a_         216 RGDFLSEEWRERIANTSVIFVN-NFAFGPEVDHQLKERFANMKEG  259 (328)
T ss_dssp             ECCTTSHHHHHHHHHCSEEEEC-CTTTCHHHHHHHHHHHTTCCTT
T ss_pred             ECcccccccccccCcceEEEEc-ceecchHHHHHHHHHHHhCCCC
Confidence            99999887665544  566665 4556778899999999999997

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.54  E-value=1.4e-14  Score=111.39  Aligned_cols=97  Identities=14%  Similarity=0.037  Sum_probs=80.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ...+|||||||+|.++..+++.+|..+++++|+ +.+++.++++... .....++.++.+|+.. +.+ .+||+|++..+
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~-~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~v  156 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFAD-AGLADRVTVAEGDFFK-PLP-VTADVVLLSFV  156 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH-TTCTTTEEEEECCTTS-CCS-CCEEEEEEESC
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhh-cCCcceeeeeeeeccc-ccc-ccchhhhcccc
Confidence            456899999999999999999999999999997 7788888887754 1334568888888654 333 45999999999


Q ss_pred             ccCcCCh--HHHHHHHHhccCCC
Q 029554          171 LHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      ||+++|.  ..+|++++++||||
T Consensus       157 Lh~~~d~~~~~lL~~i~~~Lkpg  179 (256)
T d1qzza2         157 LLNWSDEDALTILRGCVRALEPG  179 (256)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             ccccCcHHHHHHHHHHHhhcCCc
Confidence            9999765  46799999999986

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.6e-14  Score=109.08  Aligned_cols=111  Identities=16%  Similarity=0.087  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccC---CCCceeeEec
Q 029554           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHN---DNIETCFVVG  150 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~---~~~~~~~~~~  150 (191)
                      ..+..++++.|....+++.+|||+|||+|+.+..|++. ++..+|+++|+++++++.+++++.....   ...++.+..+
T Consensus        60 P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~g  139 (224)
T d1i1na_          60 PHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG  139 (224)
T ss_dssp             HHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES
T ss_pred             hHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEe
Confidence            34555777776543568899999999999999988775 4557999999999999999988754211   1345788889


Q ss_pred             CCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          151 DEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       151 d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |....++++++||.|+++.+++++++      ++.+.||||
T Consensus       140 D~~~~~~~~~~fD~I~~~~~~~~ip~------~l~~~LkpG  174 (224)
T d1i1na_         140 DGRMGYAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPG  174 (224)
T ss_dssp             CGGGCCGGGCCEEEEEECSBBSSCCH------HHHHTEEEE
T ss_pred             ecccccchhhhhhhhhhhcchhhcCH------HHHhhcCCC
Confidence            98777767889999999999998752      467788875

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.1e-14  Score=112.43  Aligned_cols=111  Identities=14%  Similarity=0.007  Sum_probs=76.1

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHh-hcCCCceEEEEECChhHHHHHHHhhhhccCCCC--------------
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR-GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--------------  143 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~-~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~--------------  143 (191)
                      ..+-+....-...+.+|||+|||+|......+ +.+  .+|+++|+|+.|++.+++..........              
T Consensus        42 ~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  119 (263)
T d2g72a1          42 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGK  119 (263)
T ss_dssp             HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCS
T ss_pred             HHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccc
Confidence            34444444333457799999999997765444 444  6899999999999999887643110000              


Q ss_pred             --------------ceeeEecCCC------CCCCCCCCcceEEeCCcccCcC----ChHHHHHHHHhccCCC
Q 029554          144 --------------ETCFVVGDEE------FLPLKESSLDLAISCLGLHWTN----DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       144 --------------~~~~~~~d~~------~l~~~~~~fDlVis~~~l~~~~----d~~~~l~~i~r~Lkpg  191 (191)
                                    .......|+.      ..+.+.++||+|++.++|||+.    ++..+++++.++||||
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPG  191 (263)
T d2g72a1         120 GECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG  191 (263)
T ss_dssp             CCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred             cchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCC
Confidence                          0112233432      2335567899999999999984    5678999999999997

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.52  E-value=1.5e-14  Score=110.77  Aligned_cols=103  Identities=15%  Similarity=0.086  Sum_probs=82.3

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK  158 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~  158 (191)
                      .++.++.  ..|+.+|||+|||+|.++..|++. ++..+|+++|.++.+++.|+++++.+ ....++.+..+|+... ++
T Consensus        76 ~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~-~~~~nv~~~~~Di~~~-~~  151 (250)
T d1yb2a1          76 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF-YDIGNVRTSRSDIADF-IS  151 (250)
T ss_dssp             -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT-SCCTTEEEECSCTTTC-CC
T ss_pred             HHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh-cCCCceEEEEeeeecc-cc
Confidence            3444444  568999999999999999998865 56689999999999999999988652 2346789999998765 35


Q ss_pred             CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          159 ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +++||.|+++     ++++..++.++.++||||
T Consensus       152 ~~~fD~V~ld-----~p~p~~~l~~~~~~LKpG  179 (250)
T d1yb2a1         152 DQMYDAVIAD-----IPDPWNHVQKIASMMKPG  179 (250)
T ss_dssp             SCCEEEEEEC-----CSCGGGSHHHHHHTEEEE
T ss_pred             cceeeeeeec-----CCchHHHHHHHHHhcCCC
Confidence            6889999864     668889999999999996

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.50  E-value=5.7e-14  Score=105.84  Aligned_cols=102  Identities=13%  Similarity=0.060  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l  155 (191)
                      .+...+++.+.  ..++.+|||||||+|+++..|+..+  .+|+++|+++.+++.++++..    ...++.++.+|....
T Consensus        57 ~~~a~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~----~~~nv~~~~~d~~~g  128 (224)
T d1vbfa_          57 NLGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLS----YYNNIKLILGDGTLG  128 (224)
T ss_dssp             HHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHT----TCSSEEEEESCGGGC
T ss_pred             hhHHHHHHHhh--hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHh----cccccccccCchhhc
Confidence            34445666665  5688899999999999999999877  899999999999999988764    346789999996654


Q ss_pred             CCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          156 PLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       156 ~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ..+.++||.|+++.+++++++      .+.+.||||
T Consensus       129 ~~~~~pfD~Iiv~~a~~~ip~------~l~~qLk~G  158 (224)
T d1vbfa_         129 YEEEKPYDRVVVWATAPTLLC------KPYEQLKEG  158 (224)
T ss_dssp             CGGGCCEEEEEESSBBSSCCH------HHHHTEEEE
T ss_pred             chhhhhHHHHHhhcchhhhhH------HHHHhcCCC
Confidence            445688999999999988752      344566664

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=2e-13  Score=108.42  Aligned_cols=98  Identities=14%  Similarity=0.126  Sum_probs=80.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ++.+|||||||+|.++..+++.+ ..+|+++|.|+ ++..+++.... .+...++.++.++.+.+++++.+||+|++...
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~-~~~~a~~~~~~-~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~  114 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSS-IIEMAKELVEL-NGFSDKITLLRGKLEDVHLPFPKVDIIISEWM  114 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESST-HHHHHHHHHHH-TTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCH-HHHHHHHHHHH-hCccccceEEEeehhhccCcccceeEEEEEec
Confidence            67899999999999999888876 45899999996 66677766554 24456789999999999988899999999766


Q ss_pred             ccCc---CChHHHHHHHHhccCCC
Q 029554          171 LHWT---NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~---~d~~~~l~~i~r~Lkpg  191 (191)
                      .+++   ..+..++..+.++||||
T Consensus       115 ~~~~~~e~~~~~~~~a~~r~Lkpg  138 (328)
T d1g6q1_         115 GYFLLYESMMDTVLYARDHYLVEG  138 (328)
T ss_dssp             BTTBSTTCCHHHHHHHHHHHEEEE
T ss_pred             ceeeccchhHHHHHHHHHhccCCC
Confidence            5544   56788999999999986

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.44  E-value=8.9e-14  Score=105.01  Aligned_cols=120  Identities=12%  Similarity=0.070  Sum_probs=90.3

Q ss_pred             hcCCCchHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCC
Q 029554           66 LTRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI  143 (191)
Q Consensus        66 ~y~~~~~~~~~~~~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~  143 (191)
                      .|+.++..+..++..++..+..+ ..|+.+|||+|||+|..+..|++. ++..+|+++|+|+.|++.++++.+.    ..
T Consensus        47 e~R~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~----~~  122 (227)
T d1g8aa_          47 EYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE----RR  122 (227)
T ss_dssp             EEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS----CT
T ss_pred             eEEEECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh----cC
Confidence            46666666666666665544332 458889999999999999999876 5668999999999999999888743    34


Q ss_pred             ceeeEecCCC---CCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          144 ETCFVVGDEE---FLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       144 ~~~~~~~d~~---~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++..+..|..   ..+.....+|+|++.  +++.++...++.++.++||||
T Consensus       123 ~~~~i~~d~~~~~~~~~~~~~vD~i~~d--~~~~~~~~~~l~~~~~~Lkpg  171 (227)
T d1g8aa_         123 NIVPILGDATKPEEYRALVPKVDVIFED--VAQPTQAKILIDNAEVYLKRG  171 (227)
T ss_dssp             TEEEEECCTTCGGGGTTTCCCEEEEEEC--CCSTTHHHHHHHHHHHHEEEE
T ss_pred             CceEEEEECCCcccccccccceEEEEEE--ccccchHHHHHHHHHHhcccC
Confidence            4566666654   234445678988874  566677888999999999986

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=3.5e-13  Score=106.48  Aligned_cols=98  Identities=16%  Similarity=0.100  Sum_probs=78.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ++.+|||||||+|.++..+++.+ ..+|+++|.|+.+ ..+++.... .+...++.++.+|...++++.++||+|++...
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~G-a~~V~avd~s~~~-~~a~~~~~~-n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~  109 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSSIS-DYAVKIVKA-NKLDHVVTIIKGKVEEVELPVEKVDIIISEWM  109 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTH-HHHHHHHHH-TTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred             CcCEEEEEecCCcHHHHHHHHhC-CCEEEEEcCcHHH-hhhhhHHHH-hCCccccceEeccHHHcccccceeEEEeeeee
Confidence            67889999999999999888876 3579999999865 455444433 23456799999999999988899999999776


Q ss_pred             ccCc---CChHHHHHHHHhccCCC
Q 029554          171 LHWT---NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~---~d~~~~l~~i~r~Lkpg  191 (191)
                      .+++   ..+..++..+.++||||
T Consensus       110 ~~~l~~e~~~~~~l~~~~r~Lkp~  133 (316)
T d1oria_         110 GYCLFYESMLNTVLHARDKWLAPD  133 (316)
T ss_dssp             BBTBTBTCCHHHHHHHHHHHEEEE
T ss_pred             eeeeccHHHHHHHHHHHHhcCCCC
Confidence            6554   46788999999999986

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.2e-13  Score=104.75  Aligned_cols=98  Identities=15%  Similarity=0.082  Sum_probs=77.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ++.+|||||||+|.++..+++.+ ..+|+++|.|+.+.... +.... .+...++.++.+|+++++++..+||+|++...
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~G-a~~V~aid~s~~~~~a~-~~~~~-~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~  111 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAM-DIIRL-NKLEDTITLIKGKIEEVHLPVEKVDVIISEWM  111 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESSTHHHHHH-HHHHH-TTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             CcCEEEEECCCCCHHHHHHHHcC-CCEEEEEeCHHHHHHHH-HHHHH-hCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence            57789999999999999998876 36899999999886543 33322 24566799999999999988899999999876


Q ss_pred             ccCcC---ChHHHHHHHHhccCCC
Q 029554          171 LHWTN---DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~---d~~~~l~~i~r~Lkpg  191 (191)
                      .++..   .+..++....++||||
T Consensus       112 ~~~~~~e~~~~~~~~a~~~~Lkp~  135 (311)
T d2fyta1         112 GYFLLFESMLDSVLYAKNKYLAKG  135 (311)
T ss_dssp             BTTBTTTCHHHHHHHHHHHHEEEE
T ss_pred             eeecccccccHHHHHHHHhcCCCC
Confidence            66553   3456677778899986

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.5e-13  Score=106.00  Aligned_cols=106  Identities=14%  Similarity=0.052  Sum_probs=81.9

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhcc---------CCCCceeeE
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAH---------NDNIETCFV  148 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~---------~~~~~~~~~  148 (191)
                      ..++..+.  ..|+.+|||+|||+|.++..|+.. ++..+|+++|+++.+++.|+++++.+.         ....++.+.
T Consensus        88 ~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~  165 (324)
T d2b25a1          88 NMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI  165 (324)
T ss_dssp             HHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred             HHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence            35565665  568999999999999999999875 566899999999999999998876421         224578899


Q ss_pred             ecCCCCCC--CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          149 VGDEEFLP--LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       149 ~~d~~~l~--~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ..|+....  +++..||.|+.     .++++..++.++.++||||
T Consensus       166 ~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpG  205 (324)
T d2b25a1         166 HKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHG  205 (324)
T ss_dssp             ESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEE
T ss_pred             ecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCC
Confidence            99987543  45678999986     4567888999999999996

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=8.3e-13  Score=101.86  Aligned_cols=104  Identities=14%  Similarity=-0.008  Sum_probs=82.8

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC
Q 029554           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (191)
Q Consensus        79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~  157 (191)
                      ..++..+.  ..++.+|||+|||+|.++..++.. ++..+|+++|+++.+++.|+++++.+ ....++.+...|+.. .+
T Consensus        93 ~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~-g~~~~v~~~~~d~~~-~~  168 (266)
T d1o54a_          93 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW-GLIERVTIKVRDISE-GF  168 (266)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT-TCGGGEEEECCCGGG-CC
T ss_pred             HHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-ccccCcEEEeccccc-cc
Confidence            34555555  568999999999999999999865 46689999999999999999988762 233567777777533 24


Q ss_pred             CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          158 KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ....||.|+     ++++++..++.++.++||||
T Consensus       169 ~~~~~D~V~-----~d~p~p~~~l~~~~~~LKpG  197 (266)
T d1o54a_         169 DEKDVDALF-----LDVPDPWNYIDKCWEALKGG  197 (266)
T ss_dssp             SCCSEEEEE-----ECCSCGGGTHHHHHHHEEEE
T ss_pred             cccceeeeE-----ecCCCHHHHHHHHHhhcCCC
Confidence            557799886     46789999999999999996

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.34  E-value=2.1e-12  Score=96.56  Aligned_cols=96  Identities=11%  Similarity=0.051  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~  154 (191)
                      ..+..++++.+.  ..++.+|||||||+|+.+..|+... ..+|+++|.++.+++.++++...  ....++.+..+|...
T Consensus        64 P~~~a~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~--~g~~nv~~~~gd~~~  138 (215)
T d1jg1a_          64 PHMVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLER--AGVKNVHVILGDGSK  138 (215)
T ss_dssp             HHHHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHH--TTCCSEEEEESCGGG
T ss_pred             hhhHHHHHHhhc--cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHH--cCCceeEEEECcccc
Confidence            445556777776  5688899999999999999998763 16799999999999999998876  345789999999776


Q ss_pred             CCCCCCCcceEEeCCcccCcC
Q 029554          155 LPLKESSLDLAISCLGLHWTN  175 (191)
Q Consensus       155 l~~~~~~fDlVis~~~l~~~~  175 (191)
                      ...+.++||.|+++.++.+++
T Consensus       139 g~~~~~pfD~Iiv~~a~~~ip  159 (215)
T d1jg1a_         139 GFPPKAPYDVIIVTAGAPKIP  159 (215)
T ss_dssp             CCGGGCCEEEEEECSBBSSCC
T ss_pred             CCcccCcceeEEeecccccCC
Confidence            555678999999999998775

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.32  E-value=5.9e-12  Score=92.72  Aligned_cols=69  Identities=16%  Similarity=0.039  Sum_probs=58.2

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      ..+.+|||+|||+|.++..+...+ ..+|+++|+++.+++.++++...       +.+.++|+..++   ++||+|++|-
T Consensus        47 l~Gk~VLDlGcGtG~l~i~a~~~g-a~~V~~vDid~~a~~~ar~N~~~-------~~~~~~D~~~l~---~~fD~Vi~NP  115 (197)
T d1ne2a_          47 IGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNCGG-------VNFMVADVSEIS---GKYDTWIMNP  115 (197)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHCTT-------SEEEECCGGGCC---CCEEEEEECC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcC-CCcccccccCHHHHHHHHHcccc-------ccEEEEehhhcC---CcceEEEeCc
Confidence            367899999999999988777765 36799999999999999887643       789999988764   6799999983

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=1.5e-12  Score=105.72  Aligned_cols=112  Identities=10%  Similarity=-0.072  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhc-------cCCCCceee-E
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA-------HNDNIETCF-V  148 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~-------~~~~~~~~~-~  148 (191)
                      ...++++.+.  ..++.+|||||||+|..+..++...++++++|+|+|+.|++.|+++....       ........+ .
T Consensus       204 ~i~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~  281 (406)
T d1u2za_         204 FLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  281 (406)
T ss_dssp             HHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence            3456776766  56888999999999999999988766789999999999999998876531       111122222 2


Q ss_pred             ecCCCCCCC---CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          149 VGDEEFLPL---KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       149 ~~d~~~l~~---~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .++....+.   .-..+|+|+++. ++|.+++...+.++.++||||
T Consensus       282 ~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPG  326 (406)
T d1u2za_         282 KKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVG  326 (406)
T ss_dssp             SSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTT
T ss_pred             eechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCC
Confidence            233322211   113467888764 556778999999999999998

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.28  E-value=3.5e-12  Score=95.85  Aligned_cols=110  Identities=12%  Similarity=0.009  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC------CCceEEEEECChhHHHHHHHhhhhcc---CCCCcee
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG------GIEKLIMMDTSYDMLKLCKDAQQDAH---NDNIETC  146 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~------~~~~v~~vD~s~~~l~~a~~~~~~~~---~~~~~~~  146 (191)
                      .+..++++.|.....++.+|||||||+|+.+..|+...      +..+|+++|+++++++.++++.....   ....++.
T Consensus        65 ~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~  144 (223)
T d1r18a_          65 HMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLL  144 (223)
T ss_dssp             HHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred             hhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEE
Confidence            34456776664324588899999999999998887642      23589999999999999988754310   1234688


Q ss_pred             eEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          147 FVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       147 ~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +..+|......+.++||.|+++.++.++++      .+.+.||||
T Consensus       145 ~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~g  183 (223)
T d1r18a_         145 IVEGDGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASG  183 (223)
T ss_dssp             EEESCGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEE
T ss_pred             EEecccccccccccceeeEEEEeechhchH------HHHHhcCCC
Confidence            999997765556789999999999987753      345666664

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=7.6e-12  Score=96.64  Aligned_cols=78  Identities=17%  Similarity=0.066  Sum_probs=65.4

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ...+.+|||+|||+|..+..++...|..+|+++|+|+..++.|++++..  ....++.++.+|... ++++++||+||||
T Consensus       106 ~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~--~~~~~v~~~~~d~~~-~~~~~~fDlIvsN  182 (274)
T d2b3ta1         106 PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH--LAIKNIHILQSDWFS-ALAGQQFAMIVSN  182 (274)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH--HTCCSEEEECCSTTG-GGTTCCEEEEEEC
T ss_pred             cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHH--hCcccceeeeccccc-ccCCCceeEEEec
Confidence            4456789999999999999999888889999999999999999998875  233468999999654 3356789999998


Q ss_pred             C
Q 029554          169 L  169 (191)
Q Consensus       169 ~  169 (191)
                      -
T Consensus       183 P  183 (274)
T d2b3ta1         183 P  183 (274)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.21  E-value=6.5e-11  Score=87.46  Aligned_cols=75  Identities=12%  Similarity=0.058  Sum_probs=61.3

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      .+.+|||+|||+|.++..++..+ ..+|+++|+++.+++.++++...   ...+..++..|...++   ++||+|++|--
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~---~~~~~~~~~~d~~~~~---~~fD~Vi~nPP  118 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGE---FKGKFKVFIGDVSEFN---SRVDIVIMNPP  118 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGG---GTTSEEEEESCGGGCC---CCCSEEEECCC
T ss_pred             CCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHH---cCCCceEEECchhhhC---CcCcEEEEcCc
Confidence            57799999999999998887765 35899999999999999998764   3446788888877663   67999999865


Q ss_pred             cc
Q 029554          171 LH  172 (191)
Q Consensus       171 l~  172 (191)
                      ..
T Consensus       119 ~~  120 (201)
T d1wy7a1         119 FG  120 (201)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.18  E-value=1.4e-11  Score=90.50  Aligned_cols=109  Identities=12%  Similarity=0.070  Sum_probs=83.2

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-  156 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-  156 (191)
                      .+++++.+.  ..++..|||++||+|..+..+.+..|..+|+++|.++.|++.++++...   -..++.++.+++..+. 
T Consensus        12 l~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~---~~~r~~~~~~~f~~~~~   86 (192)
T d1m6ya2          12 VREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE---FSDRVSLFKVSYREADF   86 (192)
T ss_dssp             HHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG---GTTTEEEEECCGGGHHH
T ss_pred             HHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcc---ccccccchhHHHhhHHH
Confidence            345566665  5688899999999999999999887889999999999999999998754   3446888888876532 


Q ss_pred             ----CCCCCcceEEeCCccc---------CcCChHHHHHHHHhccCCC
Q 029554          157 ----LKESSLDLAISCLGLH---------WTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ----~~~~~fDlVis~~~l~---------~~~d~~~~l~~i~r~Lkpg  191 (191)
                          +..++||.|+..+++.         -+......+..+.++|+||
T Consensus        87 ~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~g  134 (192)
T d1m6ya2          87 LLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPG  134 (192)
T ss_dssp             HHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEE
T ss_pred             HHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCC
Confidence                4457899999877662         1223445677777777764

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.12  E-value=9.5e-11  Score=89.84  Aligned_cols=96  Identities=9%  Similarity=-0.047  Sum_probs=74.1

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC  168 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~  168 (191)
                      ..++.+|||+|||+|.++..++..+ .++|+++|+|+.+++.+++++.. ++...++.++++|...++ +.+.||.|+++
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~-n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~  181 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHL-NKVEDRMSAYNMDNRDFP-GENIADRILMG  181 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHH-TTCTTTEEEECSCTTTCC-CCSCEEEEEEC
T ss_pred             cCCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHH-hCCCceEEEEEcchHHhc-cCCCCCEEEEC
Confidence            3478899999999999999888775 46899999999999999998875 223456899999987776 35789999986


Q ss_pred             CcccCcCChHHHHHHHHhccCCC
Q 029554          169 LGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       169 ~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      .-    .....++.++.++|+||
T Consensus       182 ~p----~~~~~~l~~a~~~l~~g  200 (260)
T d2frna1         182 YV----VRTHEFIPKALSIAKDG  200 (260)
T ss_dssp             CC----SSGGGGHHHHHHHEEEE
T ss_pred             CC----CchHHHHHHHHhhcCCC
Confidence            32    12344566667777664

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.5e-10  Score=86.13  Aligned_cols=81  Identities=12%  Similarity=0.042  Sum_probs=61.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC------CCCCCCcce
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL------PLKESSLDL  164 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l------~~~~~~fDl  164 (191)
                      ...+|||+|||+|-.+..|+...+..+++|+|+|+.+++.|+++... .+...++.+...+....      ...+++||+
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~-n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQ-NNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH-TTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHH-hCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            34589999999999999998887779999999999999999998875 23344566665543221      234578999


Q ss_pred             EEeCCccc
Q 029554          165 AISCLGLH  172 (191)
Q Consensus       165 Vis~~~l~  172 (191)
                      |+||--.+
T Consensus       140 ivsNPPY~  147 (250)
T d2h00a1         140 CMCNPPFF  147 (250)
T ss_dssp             EEECCCCC
T ss_pred             EEecCccc
Confidence            99986544

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.05  E-value=5.6e-10  Score=84.67  Aligned_cols=101  Identities=17%  Similarity=0.056  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~  157 (191)
                      ...+++.+.. .....+|||||||+|..+..+++++|..+++.+|.. ..++.+        ....++.++.+|+.+ +.
T Consensus        69 ~~~l~~~~~~-f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~--------~~~~ri~~~~gd~~~-~~  137 (244)
T d1fp1d2          69 MKRMLEIYTG-FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVIENA--------PPLSGIEHVGGDMFA-SV  137 (244)
T ss_dssp             HHHHHHHCCT-TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTC--------CCCTTEEEEECCTTT-CC
T ss_pred             HHHHHHhccc-ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhhhcc--------CCCCCeEEecCCccc-cc
Confidence            4455554432 234568999999999999999999999999999974 333221        244679999999643 23


Q ss_pred             CCCCcceEEeCCcccCcCCh--HHHHHHHHhccCCC
Q 029554          158 KESSLDLAISCLGLHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                      +  ..|+|++..+||+++|.  ..+|++++++|+||
T Consensus       138 p--~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pg  171 (244)
T d1fp1d2         138 P--QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPN  171 (244)
T ss_dssp             C--CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred             c--cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCC
Confidence            3  35999999999998764  47899999999985

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=99.04  E-value=3.6e-10  Score=85.30  Aligned_cols=85  Identities=7%  Similarity=0.038  Sum_probs=67.2

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~  157 (191)
                      .+++++.+.  ..++.+|||||||+|.+|..|.+.+  .+|+++|+++.+++.++++..    ...++.++.+|+..+++
T Consensus        10 ~~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~----~~~n~~i~~~D~l~~~~   81 (235)
T d1qama_          10 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLV----DHDNFQVLNKDILQFKF   81 (235)
T ss_dssp             HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTT----TCCSEEEECCCGGGCCC
T ss_pred             HHHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhh----cccchhhhhhhhhhccc
Confidence            444444443  3578899999999999999999987  899999999999999988764    35679999999888776


Q ss_pred             CCCCcceEEeCCc
Q 029554          158 KESSLDLAISCLG  170 (191)
Q Consensus       158 ~~~~fDlVis~~~  170 (191)
                      +......|++|.-
T Consensus        82 ~~~~~~~vv~NLP   94 (235)
T d1qama_          82 PKNQSYKIFGNIP   94 (235)
T ss_dssp             CSSCCCEEEEECC
T ss_pred             cccccceeeeeeh
Confidence            6555556777643

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.01  E-value=4.6e-11  Score=94.23  Aligned_cols=97  Identities=11%  Similarity=-0.031  Sum_probs=74.3

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC----CCCCCCCcceEE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPLKESSLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~----l~~~~~~fDlVi  166 (191)
                      .+.+|||++||+|.++..++..+  .+|+++|+|+.+++.+++++..  +...++.+++.|...    ++...++||+|+
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g~--~~V~~vD~s~~al~~a~~n~~~--ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi  220 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALGF--REVVAVDSSAEALRRAEENARL--NGLGNVRVLEANAFDLLRRLEKEGERFDLVV  220 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE--EEEEEEESCHHHHHHHHHHHHH--TTCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhcC--CcEEeecchHHHHHHHHHHHHH--cCCCCcceeeccHHHHhhhhHhhhcCCCEEE
Confidence            57799999999999999887655  8999999999999999999876  445578899998643    333457899999


Q ss_pred             eCCccc-C--------cCChHHHHHHHHhccCCC
Q 029554          167 SCLGLH-W--------TNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~-~--------~~d~~~~l~~i~r~Lkpg  191 (191)
                      ++--.. .        ..+...++..+.++|+||
T Consensus       221 ~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpG  254 (318)
T d1wxxa2         221 LDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG  254 (318)
T ss_dssp             ECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE
T ss_pred             EcCCccccchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            864211 1        122345777888889886

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.01  E-value=3.7e-10  Score=85.72  Aligned_cols=89  Identities=15%  Similarity=0.113  Sum_probs=71.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ...+|||||||+|..+..+++++|..+++++|.. ..++.+        ....++.++.+|+... .+  .+|++++..+
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~--------~~~~rv~~~~gD~f~~-~p--~aD~~~l~~v  147 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVENL--------SGSNNLTYVGGDMFTS-IP--NADAVLLKYI  147 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTC--------CCBTTEEEEECCTTTC-CC--CCSEEEEESC
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHhC--------cccCceEEEecCcccC-CC--CCcEEEEEee
Confidence            3468999999999999999999999999999984 333322        3456799999997642 23  4799999999


Q ss_pred             ccCcCChH--HHHHHHHhccCCC
Q 029554          171 LHWTNDLP--GAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d~~--~~l~~i~r~Lkpg  191 (191)
                      ||+++|..  .+|++++++|+||
T Consensus       148 LHdw~d~~~~~iL~~~~~al~pg  170 (244)
T d1fp2a2         148 LHNWTDKDCLRILKKCKEAVTND  170 (244)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHSGG
T ss_pred             cccCChHHHHHHHHHHHHHcCcc
Confidence            99997664  6899999999985

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.00  E-value=2.6e-10  Score=82.04  Aligned_cols=96  Identities=9%  Similarity=-0.027  Sum_probs=63.5

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC--CCCCCCCCcceEEe
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE--FLPLKESSLDLAIS  167 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~--~l~~~~~~fDlVis  167 (191)
                      ..+.+|||+|||+|.++.....++  ++++++|.|+.+++.+++++... +...++.....|..  .......+||+|++
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~-~~~~~v~~~~~d~~~~~~~~~~~~fD~If~  116 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRT-GLGARVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHH-TCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             cCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhh-ccccceeeeehhcccccccccCCccceeEE
Confidence            367799999999999999888887  78999999999999999988652 22233333333321  12234568999998


Q ss_pred             CCcccCcCChHHHHHHHH--hccCC
Q 029554          168 CLGLHWTNDLPGAMIQVS--IFLLP  190 (191)
Q Consensus       168 ~~~l~~~~d~~~~l~~i~--r~Lkp  190 (191)
                      +=-.+  .+....+.++.  .+|+|
T Consensus       117 DPPY~--~~~~~~l~~l~~~~ll~~  139 (171)
T d1ws6a1         117 APPYA--MDLAALFGELLASGLVEA  139 (171)
T ss_dssp             CCCTT--SCTTHHHHHHHHHTCEEE
T ss_pred             ccccc--cCHHHHHHHHHHcCCcCC
Confidence            63222  13334444443  34554

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=1.3e-09  Score=81.14  Aligned_cols=99  Identities=11%  Similarity=0.002  Sum_probs=71.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC-----CCCCCcc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP-----LKESSLD  163 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~-----~~~~~fD  163 (191)
                      .+.+|||+|||+|..+..++... +..+++++|+++.+.+.+++.+.. .+...+++++.+|..+ ++     +..+.||
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~-~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D  134 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNF-AGLQDKVTILNGASQDLIPQLKKKYDVDTLD  134 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHH-HTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHH-cCCCccceeeeccccccccchhhcccccccc
Confidence            55789999999999999998764 347999999999999999987764 2344569999998543 22     3456899


Q ss_pred             eEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          164 LAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       164 lVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +|+....-... .....+.+..++|+||
T Consensus       135 ~ifiD~~~~~~-~~~~~l~~~~~lLkpG  161 (214)
T d2cl5a1         135 MVFLDHWKDRY-LPDTLLLEKCGLLRKG  161 (214)
T ss_dssp             EEEECSCGGGH-HHHHHHHHHTTCEEEE
T ss_pred             eeeeccccccc-ccHHHHHHHhCccCCC
Confidence            99976321111 1223466677788875

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.98  E-value=5e-10  Score=88.38  Aligned_cols=100  Identities=12%  Similarity=0.002  Sum_probs=74.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC----CCCCCCCcceE
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPLKESSLDLA  165 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~----l~~~~~~fDlV  165 (191)
                      .++.+|||+|||+|..+..++..+ ..+|+++|+|+.+++.+++++.. ++...++.++++|+..    ++....+||+|
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~~-ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V  221 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKL-NGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV  221 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHH-TTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHHH-cCCCccceeeechhhhhhHHHHhccCCCCch
Confidence            468899999999999999888765 35899999999999999998876 1223578899998543    23345789999


Q ss_pred             EeCCccc--Cc-------CChHHHHHHHHhccCCC
Q 029554          166 ISCLGLH--WT-------NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       166 is~~~l~--~~-------~d~~~~l~~i~r~Lkpg  191 (191)
                      +++--..  +-       .+...++..+.++|+||
T Consensus       222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pG  256 (324)
T d2as0a2         222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG  256 (324)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE
T ss_pred             hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9854311  11       12345677778888875

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.97  E-value=3.6e-10  Score=79.71  Aligned_cols=86  Identities=9%  Similarity=0.015  Sum_probs=65.6

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCCC
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLK  158 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~~  158 (191)
                      .+...|.. .-.+.+|||+|||+|.++...+.++. .+|+++|.++.+++.+++.+.. .+...++.++++|... ++..
T Consensus         4 ~~fn~l~~-~~~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~-~~~~~~~~ii~~D~~~~l~~~   80 (152)
T d2esra1           4 AIFNMIGP-YFNGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIM-TKAENRFTLLKMEAERAIDCL   80 (152)
T ss_dssp             HHHHHHCS-CCCSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHT-TTCGGGEEEECSCHHHHHHHB
T ss_pred             HHHHHHHh-hCCCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhh-cccccchhhhccccccccccc
Confidence            34444443 23577999999999999987777763 6999999999999999988865 2334568999999654 3445


Q ss_pred             CCCcceEEeC
Q 029554          159 ESSLDLAISC  168 (191)
Q Consensus       159 ~~~fDlVis~  168 (191)
                      .++||+|++.
T Consensus        81 ~~~fDiIf~D   90 (152)
T d2esra1          81 TGRFDLVFLD   90 (152)
T ss_dssp             CSCEEEEEEC
T ss_pred             ccccceeEec
Confidence            6789999985

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.95  E-value=5.4e-11  Score=90.39  Aligned_cols=88  Identities=11%  Similarity=0.150  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~  156 (191)
                      +.+++++.+.  ..+..+|||||||+|.+|..|++.+  .+|+++|+++.+++.+++++.    ...++.++.+|+..++
T Consensus        17 ii~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~----~~~n~~ii~~D~l~~~   88 (245)
T d1yuba_          17 VLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLK----LNTRVTLIHQDILQFQ   88 (245)
T ss_dssp             THHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTT----TCSEEEECCSCCTTTT
T ss_pred             HHHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhh----hccchhhhhhhhhccc
Confidence            3455665554  4467799999999999999999987  899999999999988876653    3467999999999888


Q ss_pred             CCCCCcceEEeCCccc
Q 029554          157 LKESSLDLAISCLGLH  172 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~  172 (191)
                      ++...++.|++|.-.+
T Consensus        89 ~~~~~~~~vv~NLPY~  104 (245)
T d1yuba_          89 FPNKQRYKIVGNIPYH  104 (245)
T ss_dssp             CCCSSEEEEEEECCSS
T ss_pred             cccceeeeEeeeeehh
Confidence            8888888899887644

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.95  E-value=2.9e-09  Score=77.84  Aligned_cols=101  Identities=10%  Similarity=-0.029  Sum_probs=68.4

Q ss_pred             CCCeEEEEcCCccHHHHHH----hhc----CCCceEEEEECChhHHHHHHHhhhh-c-----------------cCC---
Q 029554           91 TFPTALCLGGSLEAVRRLL----RGR----GGIEKLIMMDTSYDMLKLCKDAQQD-A-----------------HND---  141 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l----~~~----~~~~~v~~vD~s~~~l~~a~~~~~~-~-----------------~~~---  141 (191)
                      ..-+|+++|||+|.....|    .+.    ....+++++|+|+.+++.|++..-. +                 ...   
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            4458999999999754333    221    1234799999999999999753210 0                 000   


Q ss_pred             --------CCceeeEecCCCC-CCCCCCCcceEEeCCcccCcCCh--HHHHHHHHhccCCC
Q 029554          142 --------NIETCFVVGDEEF-LPLKESSLDLAISCLGLHWTNDL--PGAMIQVSIFLLPD  191 (191)
Q Consensus       142 --------~~~~~~~~~d~~~-l~~~~~~fDlVis~~~l~~~~d~--~~~l~~i~r~Lkpg  191 (191)
                              ...+.+...+... .+.+.+.||+|+|.++|.|+++.  ..++.++.++|+||
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pG  164 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPD  164 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEE
T ss_pred             eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCC
Confidence                    0112344444332 33456889999999999999755  57899999999996

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.94  E-value=6.6e-10  Score=86.77  Aligned_cols=100  Identities=18%  Similarity=0.209  Sum_probs=73.2

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-C---CCCCCCcceE
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-L---PLKESSLDLA  165 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l---~~~~~~fDlV  165 (191)
                      ..+.+|||+.||+|.++..++..+  ++|++||.|+.+++.|++++...+-...++.+++.|+.. +   ......||+|
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~G--A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I  208 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII  208 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCC--CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence            356799999999999999998877  799999999999999999886522223468999999643 2   1234689999


Q ss_pred             EeC---Ccc-----cC-c-CChHHHHHHHHhccCCC
Q 029554          166 ISC---LGL-----HW-T-NDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       166 is~---~~l-----~~-~-~d~~~~l~~i~r~Lkpg  191 (191)
                      |+.   ++-     .+ + .+....+..+..+|+||
T Consensus       209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~  244 (309)
T d2igta1         209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPK  244 (309)
T ss_dssp             EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTT
T ss_pred             EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCC
Confidence            984   221     11 1 23455667778888875

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=4.5e-09  Score=80.64  Aligned_cols=76  Identities=13%  Similarity=0.067  Sum_probs=59.5

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCCCCCCcceEEeC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKESSLDLAISC  168 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~~~~~fDlVis~  168 (191)
                      ...+|||+|||+|..+..++. .|..+|+++|+|+..++.|++++.. .+....+.+..+|... ++...++||+||||
T Consensus       110 ~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~-~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAER-HGVSDRFFVRKGEFLEPFKEKFASIEMILSN  186 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHH-TTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred             cccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHH-cCCCceeEEeecccccccccccCcccEEEEc
Confidence            456899999999999888875 4678999999999999999998865 2233456667777543 33344789999998

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.84  E-value=1.7e-09  Score=84.95  Aligned_cols=100  Identities=17%  Similarity=-0.013  Sum_probs=72.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-C---CCCCCCcceEE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-L---PLKESSLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l---~~~~~~fDlVi  166 (191)
                      ++.+|||+.||+|.++..++..+ ..+|+++|+|+.+++.+++++...+-...++.++++|+.. +   ......||+||
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii  222 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  222 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence            67899999999999998776654 4689999999999999999887522223578899999642 2   22446899999


Q ss_pred             eCC---c-----cc-CcCChHHHHHHHHhccCCC
Q 029554          167 SCL---G-----LH-WTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~---~-----l~-~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +.-   +     +. -..+....+..+.++|+||
T Consensus       223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pg  256 (317)
T d2b78a2         223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN  256 (317)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE
T ss_pred             EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence            841   1     11 1123456778888888885

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=6.6e-09  Score=77.39  Aligned_cols=107  Identities=13%  Similarity=0.025  Sum_probs=79.5

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC-
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP-  156 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~-  156 (191)
                      +++..+.. .....+|||+|||+|+.+..++...+ ..+++.+|.++...+.+++.+.. .+...++.++.+|... ++ 
T Consensus        49 ~lL~~L~~-~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~-ag~~~~i~~~~Gda~e~l~~  126 (219)
T d2avda1          49 QLLANLAR-LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ-AEAEHKIDLRLKPALETLDE  126 (219)
T ss_dssp             HHHHHHHH-HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHH-TTCTTTEEEEESCHHHHHHH
T ss_pred             HHHHHHHH-ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHh-cCccceEEEEEeehhhcchh
Confidence            45545543 33567999999999999999987643 57999999999999999988865 2345678899988532 21 


Q ss_pred             ----CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          157 ----LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 ----~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                          ...++||+|+....   -.+....+..+.+.|+||
T Consensus       127 ~~~~~~~~~fD~ifiD~d---k~~y~~~~~~~~~lL~~G  162 (219)
T d2avda1         127 LLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPG  162 (219)
T ss_dssp             HHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEE
T ss_pred             hhhhcccCCccEEEEeCC---HHHHHHHHHHHHHHhcCC
Confidence                23578999998643   235567778888888875

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.83  E-value=1.9e-08  Score=76.03  Aligned_cols=89  Identities=16%  Similarity=-0.004  Sum_probs=69.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG  170 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~  170 (191)
                      ...+|||||||+|.++..+++.+|..+++++|..+. ++.+        ....++.+..+|+.. +.|.  .|.++...+
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~--------~~~~r~~~~~~d~~~-~~P~--ad~~~l~~v  148 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA--------PSYPGVEHVGGDMFV-SIPK--ADAVFMKWI  148 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC--------CCCTTEEEEECCTTT-CCCC--CSCEECSSS
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc--------ccCCceEEecccccc-cCCC--cceEEEEEE
Confidence            356899999999999999999999999999998653 2221        234568999999643 2232  477888889


Q ss_pred             ccCcCC--hHHHHHHHHhccCCC
Q 029554          171 LHWTND--LPGAMIQVSIFLLPD  191 (191)
Q Consensus       171 l~~~~d--~~~~l~~i~r~Lkpg  191 (191)
                      +|..+|  ...+|++++++|+||
T Consensus       149 lh~~~d~~~~~iL~~~~~al~pg  171 (243)
T d1kyza2         149 CHDWSDEHCLKFLKNCYEALPDN  171 (243)
T ss_dssp             STTSCHHHHHHHHHHHHHHCCSS
T ss_pred             eecCCHHHHHHHHHHHHHhcCCC
Confidence            998764  557899999999996

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=6.8e-09  Score=75.20  Aligned_cols=92  Identities=9%  Similarity=-0.059  Sum_probs=68.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-CCCCCCCCcceEEeCC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLPLKESSLDLAISCL  169 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~l~~~~~~fDlVis~~  169 (191)
                      .+.+|||++||+|.++.....++ ..+|+.+|.++..++.+++++..  ....+..++..|+. .+.....+||+|++.-
T Consensus        43 ~~~~vLDlfaGsG~~giealsrG-a~~v~~VE~~~~a~~~~k~N~~~--~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DP  119 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLAT--LKAGNARVVNSNAMSFLAQKGTPHNIVFVDP  119 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHH--TTCCSEEEECSCHHHHHSSCCCCEEEEEECC
T ss_pred             chhhhhhhhccccceeeeEEecC-cceeEEEEEeechhhHHHHHHhh--ccccceeeeeecccccccccccccCEEEEcC
Confidence            56789999999999998777776 36899999999999999998865  33456788888854 3444567899999864


Q ss_pred             cccCcCChHHHHHHHHh
Q 029554          170 GLHWTNDLPGAMIQVSI  186 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r  186 (191)
                      -.. .......+..+.+
T Consensus       120 PY~-~~~~~~~l~~l~~  135 (183)
T d2fpoa1         120 PFR-RGLLEETINLLED  135 (183)
T ss_dssp             SSS-TTTHHHHHHHHHH
T ss_pred             ccc-cchHHHHHHHHHH
Confidence            322 2244556665543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.70  E-value=2.1e-08  Score=78.37  Aligned_cols=101  Identities=23%  Similarity=0.252  Sum_probs=76.1

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc---CCCCceeeEecCCC-CCCCCCCCcceEE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH---NDNIETCFVVGDEE-FLPLKESSLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~---~~~~~~~~~~~d~~-~l~~~~~~fDlVi  166 (191)
                      .+.+||.||.|.|.....+.+..+..++++||+++.+++.|++.+....   ....++.++.+|.. .+.-.+++||+|+
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence            4678999999999999999887777899999999999999998774321   13457888989854 3333457899999


Q ss_pred             eCCcccCcCC-------hHHHHHHHHhccCCC
Q 029554          167 SCLGLHWTND-------LPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~~~d-------~~~~l~~i~r~Lkpg  191 (191)
                      +...=.+..+       -..+++.+.++|+||
T Consensus       157 ~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~  188 (312)
T d1uira_         157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG  188 (312)
T ss_dssp             EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE
T ss_pred             EeCCCcccccchhhhhhhHHHHHHHHHhcCCC
Confidence            7553222111       256899999999985

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=9.3e-08  Score=73.39  Aligned_cols=87  Identities=14%  Similarity=0.148  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~  156 (191)
                      +.+++++.+.  ..++..|||||+|+|.+|..|.+.+  .+|+++|+++.+++..++.+.. .....++.++.+|+...+
T Consensus         9 i~~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~-~~~~~~~~~i~~D~l~~~   83 (278)
T d1zq9a1           9 IINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQG-TPVASKLQVLVGDVLKTD   83 (278)
T ss_dssp             HHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTT-STTGGGEEEEESCTTTSC
T ss_pred             HHHHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhh-hccccchhhhHHHHhhhh
Confidence            4455555544  3467799999999999999999987  8999999999999999888753 122357899999987766


Q ss_pred             CCCCCcceEEeCCc
Q 029554          157 LKESSLDLAISCLG  170 (191)
Q Consensus       157 ~~~~~fDlVis~~~  170 (191)
                      ++  .++.||+|.-
T Consensus        84 ~~--~~~~vV~NLP   95 (278)
T d1zq9a1          84 LP--FFDTCVANLP   95 (278)
T ss_dssp             CC--CCSEEEEECC
T ss_pred             hh--hhhhhhcchH
Confidence            54  3567888754

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.64  E-value=6.3e-08  Score=72.32  Aligned_cols=107  Identities=11%  Similarity=-0.024  Sum_probs=79.9

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC-
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP-  156 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~-  156 (191)
                      +++..+.. .....+|||+|+++|+.+..++...+ ..+++.+|.++...+.|++.+.. .+...++.++.++... ++ 
T Consensus        49 ~~L~~L~~-~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~-~g~~~~i~~~~g~a~~~L~~  126 (227)
T d1susa1          49 QFLSMLLK-LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKK-AGVDHKIDFREGPALPVLDE  126 (227)
T ss_dssp             HHHHHHHH-HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHH-TTCGGGEEEEESCHHHHHHH
T ss_pred             HHHHHHHH-hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHH-hccccceeeeehHHHHHHHH
Confidence            34444443 23567899999999999999986543 57999999999999999998875 2334578999988542 22 


Q ss_pred             -----CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          157 -----LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       157 -----~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                           ...++||+|+....   -......+..+.+.|+||
T Consensus       127 l~~~~~~~~~fD~iFiDa~---k~~y~~~~e~~~~ll~~g  163 (227)
T d1susa1         127 MIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVG  163 (227)
T ss_dssp             HHHCGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTT
T ss_pred             HHhccccCCceeEEEeccc---hhhhHHHHHHHHhhcCCC
Confidence                 12468999998642   245677888888999986

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=1.7e-07  Score=74.17  Aligned_cols=76  Identities=9%  Similarity=0.015  Sum_probs=63.1

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC---CCCCCcce
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP---LKESSLDL  164 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~---~~~~~fDl  164 (191)
                      ..+..+|||+-||.|.++..|++.+  .+|+|+|.++.+++.|+++...  +...++.++.++.+. ++   .....+|+
T Consensus       210 ~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~--n~i~n~~~~~~~~~~~~~~~~~~~~~~d~  285 (358)
T d1uwva2         210 VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARL--NGLQNVTFYHENLEEDVTKQPWAKNGFDK  285 (358)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHH--TTCCSEEEEECCTTSCCSSSGGGTTCCSE
T ss_pred             cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHh--cccccceeeecchhhhhhhhhhhhccCce
Confidence            3466789999999999999999877  8999999999999999998775  677789999998764 22   23467999


Q ss_pred             EEeC
Q 029554          165 AISC  168 (191)
Q Consensus       165 Vis~  168 (191)
                      ||..
T Consensus       286 vilD  289 (358)
T d1uwva2         286 VLLD  289 (358)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9874

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.57  E-value=5.4e-08  Score=70.29  Aligned_cols=107  Identities=14%  Similarity=0.085  Sum_probs=75.0

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-C---
Q 029554           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-L---  155 (191)
Q Consensus        80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l---  155 (191)
                      .+...|.. ...+.+|||+.||+|.++.....+| ..+|+++|.++.+++.+++++... +...++.+++.|+.. +   
T Consensus        31 alFn~l~~-~~~~~~vLDlfaGsG~~g~ea~srG-a~~v~~ve~~~~a~~~~~~N~~~~-~~~~~~~i~~~D~~~~l~~~  107 (182)
T d2fhpa1          31 SIFNMIGP-YFDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAIT-KEPEKFEVRKMDANRALEQF  107 (182)
T ss_dssp             HHHHHHCS-CCSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHH-TCGGGEEEEESCHHHHHHHH
T ss_pred             HHHHHHHH-hcCCCEEEEcccccccccceeeecc-hhHHHHHHHHHHHHHHHHHHhhhh-hcccccccccccchhhhhhh
Confidence            44444442 2367899999999999999888877 358999999999999999887652 234578899999653 2   


Q ss_pred             CCCCCCcceEEeCCcccCcCChHHHHHHHHh--ccCC
Q 029554          156 PLKESSLDLAISCLGLHWTNDLPGAMIQVSI--FLLP  190 (191)
Q Consensus       156 ~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r--~Lkp  190 (191)
                      .....+||+|++.=-. ..++....+..+..  +|+|
T Consensus       108 ~~~~~~fDlIflDPPY-~~~~~~~~l~~i~~~~~L~~  143 (182)
T d2fhpa1         108 YEEKLQFDLVLLDPPY-AKQEIVSQLEKMLERQLLTN  143 (182)
T ss_dssp             HHTTCCEEEEEECCCG-GGCCHHHHHHHHHHTTCEEE
T ss_pred             cccCCCcceEEechhh-hhhHHHHHHHHHHHCCCCCC
Confidence            1234579999975321 12345666777653  4554

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=9.2e-08  Score=72.46  Aligned_cols=72  Identities=11%  Similarity=0.128  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~  156 (191)
                      +.+++++.+.  ..++..|||||||+|.+|..|.+.+  .+|+++|+++.+++..+++..    ...++.++.+|+..++
T Consensus         9 ~~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~----~~~~~~ii~~D~l~~~   80 (252)
T d1qyra_           9 VIDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPF----LGPKLTIYQQDAMTFN   80 (252)
T ss_dssp             HHHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTT----TGGGEEEECSCGGGCC
T ss_pred             HHHHHHHhcC--CCCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhh----hccchhHHhhhhhhhc
Confidence            4556666554  4467889999999999999999987  899999999999999987552    3457899999987654

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.52  E-value=1.8e-07  Score=72.40  Aligned_cols=101  Identities=13%  Similarity=0.074  Sum_probs=74.7

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc--CCCCceeeEecCCC-CCCCCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEE-FLPLKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~d~~-~l~~~~~~fDlVis  167 (191)
                      .+.+||-||.|.|.....+.+..+..++++||+++.+++.|++-+....  -...++.++..|.. .+.-.++.||+|++
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~  168 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  168 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence            4679999999999999999887777899999999999999988664311  12457888888843 34434578999998


Q ss_pred             CCcccCc-C----ChHHHHHHHHhccCCC
Q 029554          168 CLGLHWT-N----DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~-~----d~~~~l~~i~r~Lkpg  191 (191)
                      ...-.+. +    --..+++.+.+.|+||
T Consensus       169 D~~dp~~~~~~~L~t~efy~~~~~~L~~~  197 (295)
T d1inla_         169 DSTDPTAGQGGHLFTEEFYQACYDALKED  197 (295)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEE
T ss_pred             cCCCCCcCchhhhccHHHHHHHHhhcCCC
Confidence            6443221 1    1357899999999875

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.45  E-value=2e-07  Score=71.51  Aligned_cols=100  Identities=15%  Similarity=0.100  Sum_probs=72.5

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhc--------cCCCCceeeEecCCCC-CCCCCC
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--------HNDNIETCFVVGDEEF-LPLKES  160 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~--------~~~~~~~~~~~~d~~~-l~~~~~  160 (191)
                      ..+.+||.+|+|.|.....+.+. +..+++++|+++.+++.|++-+...        .....+++++.+|... +. .++
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~-~~~  148 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK-NNR  148 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH-HCC
T ss_pred             CCCceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh-ccC
Confidence            35679999999999999988775 4578999999999999998765321        0134678889888542 22 346


Q ss_pred             CcceEEeCCcccCcC----ChHHHHHHHHhccCCC
Q 029554          161 SLDLAISCLGLHWTN----DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       161 ~fDlVis~~~l~~~~----d~~~~l~~i~r~Lkpg  191 (191)
                      +||+|++...-..-.    .-..+++.+.++|+||
T Consensus       149 ~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~  183 (276)
T d1mjfa_         149 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP  183 (276)
T ss_dssp             CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE
T ss_pred             CCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCC
Confidence            799999854432211    1257899999999885

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=1.8e-06  Score=63.31  Aligned_cols=110  Identities=12%  Similarity=0.003  Sum_probs=75.9

Q ss_pred             chHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEec
Q 029554           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG  150 (191)
Q Consensus        71 ~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~  150 (191)
                      +.+..++.+.+. .+..+  ++.+|+|+|||.|.=+..++=..|..+++.+|.+..-+...++-...  -.-.++.++..
T Consensus        48 ~~~~rHi~DSl~-~~~~~--~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~--L~L~nv~v~~~  122 (207)
T d1jsxa_          48 EMLVRHILDSIV-VAPYL--QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHE--LKLENIEPVQS  122 (207)
T ss_dssp             CHHHHHHHHHHH-HGGGC--CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--TTCSSEEEEEC
T ss_pred             HHHHHHhcchHh-hhhhh--cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHH--cCCcceeeecc
Confidence            444445444433 23322  45689999999999888888777889999999999877777665544  12346888988


Q ss_pred             CCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCC
Q 029554          151 DEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       151 d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                      ..+... ...+||+|+|...    .++..++.-+...+++
T Consensus       123 R~E~~~-~~~~fD~V~sRA~----~~~~~ll~~~~~~l~~  157 (207)
T d1jsxa_         123 RVEEFP-SEPPFDGVISRAF----ASLNDMVSWCHHLPGE  157 (207)
T ss_dssp             CTTTSC-CCSCEEEEECSCS----SSHHHHHHHHTTSEEE
T ss_pred             chhhhc-cccccceehhhhh----cCHHHHHHHHHHhcCC
Confidence            888775 3468999998654    2455555555555554

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.40  E-value=6.2e-07  Score=68.59  Aligned_cols=101  Identities=16%  Similarity=0.097  Sum_probs=76.3

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc--CCCCceeeEecCCC-CCCCCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEE-FLPLKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~d~~-~l~~~~~~fDlVis  167 (191)
                      .+.+||-+|.|.|.....+.+..+..+++++|+++.+++.|++-+....  ....++.++..|.. .+.-.+.+||+|++
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~  154 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence            5678999999999999999987777899999999999999998764321  23457888888854 23334578999998


Q ss_pred             CCcccCcC----ChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTN----DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~----d~~~~l~~i~r~Lkpg  191 (191)
                      ...-..-.    --..+++.+.++|+||
T Consensus       155 D~~~p~~~~~~L~t~eFy~~~~~~L~~~  182 (274)
T d1iy9a_         155 DSTEPVGPAVNLFTKGFYAGIAKALKED  182 (274)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEE
T ss_pred             cCCCCCCcchhhccHHHHHHHHhhcCCC
Confidence            65322211    1357899999999875

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.38  E-value=9.6e-07  Score=68.98  Aligned_cols=77  Identities=12%  Similarity=-0.057  Sum_probs=55.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHhhc-----CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcce
Q 029554           90 KTFPTALCLGGSLEAVRRLLRGR-----GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDL  164 (191)
Q Consensus        90 ~~~~~VLDlGcG~G~~~~~l~~~-----~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDl  164 (191)
                      ..+.+|||.|||+|.++..+...     ....+++|+|+++.++..|+.....   ......+..+|..... +..+||+
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~---~~~~~~~~~~d~~~~~-~~~~fD~  191 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL---QRQKMTLLHQDGLANL-LVDPVDV  191 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH---HTCCCEEEESCTTSCC-CCCCEEE
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHH---hhhhhhhhcccccccc-ccccccc
Confidence            35568999999999998777532     2345899999999999998876643   2233556666644332 4578999


Q ss_pred             EEeCCc
Q 029554          165 AISCLG  170 (191)
Q Consensus       165 Vis~~~  170 (191)
                      |++|--
T Consensus       192 vi~NPP  197 (328)
T d2f8la1         192 VISDLP  197 (328)
T ss_dssp             EEEECC
T ss_pred             cccCCC
Confidence            999854

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.36  E-value=8.9e-07  Score=68.23  Aligned_cols=101  Identities=22%  Similarity=0.188  Sum_probs=75.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc--CCCCceeeEecCCC-CC-CCCCCCcceEE
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEE-FL-PLKESSLDLAI  166 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~d~~-~l-~~~~~~fDlVi  166 (191)
                      .+.+||-+|.|.|.....+.+..+..++++||+++.+++.|++-+....  ....++.++.+|.. .+ ..++++||+|+
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi  159 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  159 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence            4568999999999999999988777899999999999999988664311  23567888888843 33 23456899999


Q ss_pred             eCCcccCcC----ChHHHHHHHHhccCCC
Q 029554          167 SCLGLHWTN----DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       167 s~~~l~~~~----d~~~~l~~i~r~Lkpg  191 (191)
                      +...-....    --..+++.++++|+||
T Consensus       160 ~D~~dp~~~~~~L~t~eF~~~~~~~L~~~  188 (290)
T d1xj5a_         160 VDSSDPIGPAKELFEKPFFQSVARALRPG  188 (290)
T ss_dssp             ECCCCTTSGGGGGGSHHHHHHHHHHEEEE
T ss_pred             EcCCCCCCcchhhCCHHHHHHHHHhcCCC
Confidence            854421111    1256899999999885

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.34  E-value=5e-07  Score=70.21  Aligned_cols=101  Identities=16%  Similarity=0.088  Sum_probs=72.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc--CCCCceeeEecCCC-CCCCCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEE-FLPLKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~d~~-~l~~~~~~fDlVis  167 (191)
                      .+.+||-||.|.|.....+.+..+..++++||+++.+++.|++-+..+.  -...++.++..|.. .+.-...+||+|++
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~  185 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  185 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence            4678999999999999999987777899999999999999998764321  12356888888843 33334578999998


Q ss_pred             CCcccCcC----ChHHHHHHHHhccCCC
Q 029554          168 CLGLHWTN----DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~----d~~~~l~~i~r~Lkpg  191 (191)
                      ...-..-.    --..+++.+.++|+||
T Consensus       186 D~~dp~~~~~~L~t~eFy~~~~~~L~~~  213 (312)
T d2b2ca1         186 DSSDPVGPAESLFGQSYYELLRDALKED  213 (312)
T ss_dssp             CCC-------------HHHHHHHHEEEE
T ss_pred             cCCCCCCcchhhhhHHHHHHHHhhcCCC
Confidence            65422111    1245788999999875

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.32  E-value=1.8e-06  Score=62.04  Aligned_cols=94  Identities=11%  Similarity=0.011  Sum_probs=64.9

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC---CCCCCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE---FLPLKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~---~l~~~~~~fDlVis  167 (191)
                      .+.+|||+-||+|.++.....+| ..+|+.+|.+...+...+++.+..........+...|..   .......+||+|++
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRG-A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             ccceEeecccCccceeeeeeeec-ceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence            56789999999999999888887 469999999999999999988763323334555666532   22234457999998


Q ss_pred             CCcccCcCChHHHHHHHHh
Q 029554          168 CLGLHWTNDLPGAMIQVSI  186 (191)
Q Consensus       168 ~~~l~~~~d~~~~l~~i~r  186 (191)
                      .=-... +.....+..+..
T Consensus       122 DPPY~~-~~~~~~l~~l~~  139 (183)
T d2ifta1         122 DPPFHF-NLAEQAISLLCE  139 (183)
T ss_dssp             CCCSSS-CHHHHHHHHHHH
T ss_pred             chhHhh-hhHHHHHHHHHH
Confidence            532221 223455555543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=9.7e-07  Score=67.86  Aligned_cols=101  Identities=16%  Similarity=0.153  Sum_probs=73.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhc--cCCCCceeeEecCCC-CCCCCCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEE-FLPLKESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~~~~~d~~-~l~~~~~~fDlVis  167 (191)
                      .+.+||-+|.|.|..+..+.+..+..+++++|+++.+++.|++-+..+  .....++.++..|.. .+.-..++||+|++
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~  157 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  157 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence            457899999999999999988767789999999999999999876431  123457888988843 33334578999998


Q ss_pred             CCcccCc--C--ChHHHHHHHHhccCCC
Q 029554          168 CLGLHWT--N--DLPGAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~--~--d~~~~l~~i~r~Lkpg  191 (191)
                      ...-...  .  --..+++.++++|+||
T Consensus       158 D~~~p~~~~~~L~t~eF~~~~~~~L~~~  185 (285)
T d2o07a1         158 DSSDPMGPAESLFKESYYQLMKTALKED  185 (285)
T ss_dssp             ECC-----------CHHHHHHHHHEEEE
T ss_pred             cCCCCCCcccccccHHHHHHHHHhcCCC
Confidence            6432111  1  1235789999999875

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.25  E-value=1e-06  Score=63.34  Aligned_cols=85  Identities=19%  Similarity=0.121  Sum_probs=64.6

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-
Q 029554           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-  156 (191)
Q Consensus        78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-  156 (191)
                      ..++++.+.  ..++..++|..+|.|..+..+.+..  .+|+++|..+.+++.+++..      ..++.++...+..+. 
T Consensus         7 l~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~~--~~viaiD~D~~ai~~a~~~~------~~~~~~~~~~f~~~~~   76 (182)
T d1wg8a2           7 YQEALDLLA--VRPGGVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKGLH------LPGLTVVQGNFRHLKR   76 (182)
T ss_dssp             HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHTC------CTTEEEEESCGGGHHH
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhccc--CcEEEEhhhhhHHHHHhhcc------ccceeEeehHHHHHHH
Confidence            344555555  5688999999999999999888875  79999999999999987643      234777777765432 


Q ss_pred             ----CCCCCcceEEeCCccc
Q 029554          157 ----LKESSLDLAISCLGLH  172 (191)
Q Consensus       157 ----~~~~~fDlVis~~~l~  172 (191)
                          ...+.+|.|+..+++.
T Consensus        77 ~l~~~~~~~vdgIl~DLGvS   96 (182)
T d1wg8a2          77 HLAALGVERVDGILADLGVS   96 (182)
T ss_dssp             HHHHTTCSCEEEEEEECSCC
T ss_pred             HHHHcCCCccCEEEEEccCC
Confidence                3446799999987664

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.99  E-value=1.2e-05  Score=58.63  Aligned_cols=81  Identities=14%  Similarity=0.053  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l  155 (191)
                      +++-+++.+.  ...+.+|||.|||+|.++..+.+. .....++|+|+++..+..+           ....+..+|....
T Consensus         7 i~~~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~-----------~~~~~~~~~~~~~   73 (223)
T d2ih2a1           7 VVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----------PWAEGILADFLLW   73 (223)
T ss_dssp             HHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----------TTEEEEESCGGGC
T ss_pred             HHHHHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc-----------ccceeeeeehhcc
Confidence            4444554443  446789999999999998877654 3346799999998765332           2245566775544


Q ss_pred             CCCCCCcceEEeCCcc
Q 029554          156 PLKESSLDLAISCLGL  171 (191)
Q Consensus       156 ~~~~~~fDlVis~~~l  171 (191)
                      . ....||+|++|--.
T Consensus        74 ~-~~~~fd~ii~npP~   88 (223)
T d2ih2a1          74 E-PGEAFDLILGNPPY   88 (223)
T ss_dssp             C-CSSCEEEEEECCCC
T ss_pred             c-cccccceecccCcc
Confidence            3 34689999998653

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=2.2e-05  Score=56.00  Aligned_cols=81  Identities=16%  Similarity=0.121  Sum_probs=57.6

Q ss_pred             HHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---
Q 029554           81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---  156 (191)
Q Consensus        81 l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---  156 (191)
                      +.++... .++..+||||||++|.+++.+.+. .+...++++|..+-             .....+.++.+|.....   
T Consensus        13 I~~k~~l-~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-------------~~i~~~~~~~~d~~~~~~~~   78 (180)
T d1ej0a_          13 IQQSDKL-FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-------------DPIVGVDFLQGDFRDELVMK   78 (180)
T ss_dssp             HHHHHCC-CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-------------CCCTTEEEEESCTTSHHHHH
T ss_pred             HHHHhCc-cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-------------cccCCceEeecccccchhhh
Confidence            4444332 457889999999999999988764 44578999998651             23445788888876421   


Q ss_pred             -----CCCCCcceEEeCCcccCcC
Q 029554          157 -----LKESSLDLAISCLGLHWTN  175 (191)
Q Consensus       157 -----~~~~~fDlVis~~~l~~~~  175 (191)
                           ...+.||+|+|-.+..-..
T Consensus        79 ~~~~~~~~~~~DlVlSD~ap~~sg  102 (180)
T d1ej0a_          79 ALLERVGDSKVQVVMSDMAPNMSG  102 (180)
T ss_dssp             HHHHHHTTCCEEEEEECCCCCCCS
T ss_pred             hhhhhccCcceeEEEecccchhcc
Confidence                 2456899999988765543

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.87  E-value=2.2e-05  Score=58.51  Aligned_cols=94  Identities=10%  Similarity=-0.036  Sum_probs=65.3

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC---CCCCcceEEe
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL---KESSLDLAIS  167 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~---~~~~fDlVis  167 (191)
                      ...+|+|+|+|.|.=+..|+=..|..+++.+|.+..-+...+.-....  .-.++.++...+|.+..   ..++||+|+|
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L--~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s  147 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL--QLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH--TCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh--CCCCcEEEeehhhhccccccccccceEEEE
Confidence            456899999999988888876667899999999998666655444331  22457777776664431   2357999998


Q ss_pred             CCcccCcCChHHHHHHHHhccCC
Q 029554          168 CLGLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       168 ~~~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                      ..+    .++..++.-....+++
T Consensus       148 RAv----a~l~~ll~~~~~~l~~  166 (239)
T d1xdza_         148 RAV----ARLSVLSELCLPLVKK  166 (239)
T ss_dssp             ECC----SCHHHHHHHHGGGEEE
T ss_pred             hhh----hCHHHHHHHHhhhccc
Confidence            643    3556666666666654

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.66  E-value=6.8e-05  Score=55.79  Aligned_cols=97  Identities=10%  Similarity=0.010  Sum_probs=56.8

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEec-CCCCCCCCCCCcceEEe
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG-DEEFLPLKESSLDLAIS  167 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-d~~~l~~~~~~fDlVis  167 (191)
                      ..+..+|+|+|||+|.+++.++...+...+.|+++--...+   +-..........+.+... |+..+  +++..|+|+|
T Consensus        64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e---~P~~~~~~~~ni~~~~~~~dv~~l--~~~~~D~vlc  138 (257)
T d2p41a1          64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE---EPIPMSTYGWNLVRLQSGVDVFFI--PPERCDTLLC  138 (257)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC---CCCCCCSTTGGGEEEECSCCTTTS--CCCCCSEEEE
T ss_pred             ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc---CCccccccccccccchhhhhHHhc--CCCcCCEEEe
Confidence            45777999999999999999988766678888888533110   000000001112233322 23333  4678999999


Q ss_pred             CCcccCcCChH-------HHHHHHHhccCCC
Q 029554          168 CLGLHWTNDLP-------GAMIQVSIFLLPD  191 (191)
Q Consensus       168 ~~~l~~~~d~~-------~~l~~i~r~Lkpg  191 (191)
                      -.+-. ..++.       .++.-+.+.|+||
T Consensus       139 Dm~es-s~~~~vd~~Rtl~vLela~~wLk~g  168 (257)
T d2p41a1         139 DIGES-SPNPTVEAGRTLRVLNLVENWLSNN  168 (257)
T ss_dssp             CCCCC-CSSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             eCCCC-CCCchhhhhhHHHHHHHHHHHcccC
Confidence            87643 32221       3444555677775

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.62  E-value=4.2e-05  Score=56.73  Aligned_cols=92  Identities=18%  Similarity=0.027  Sum_probs=58.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhh----cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----CCCCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKESSL  162 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~----~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----~~~~~f  162 (191)
                      .+.+|||+|++.|..+..++.    .++..+++++|+.+.......       ....++.++++|.....    +....+
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-------~~~~~I~~i~gDs~~~~~~~~l~~~~~  152 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-------SDMENITLHQGDCSDLTTFEHLREMAH  152 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-------GGCTTEEEEECCSSCSGGGGGGSSSCS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-------ccccceeeeecccccHHHHHHHHhcCC
Confidence            466899999999988766653    245689999999875432221       12356888988854321    344568


Q ss_pred             ceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          163 DLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       163 DlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      |+|+.-.. |+-......+ ++...|+||
T Consensus       153 dlIfID~~-H~~~~v~~~~-~~~~lLk~G  179 (232)
T d2bm8a1         153 PLIFIDNA-HANTFNIMKW-AVDHLLEEG  179 (232)
T ss_dssp             SEEEEESS-CSSHHHHHHH-HHHHTCCTT
T ss_pred             CEEEEcCC-cchHHHHHHH-HHhcccCcC
Confidence            99887655 3322222223 456788886

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=0.0001  Score=57.15  Aligned_cols=74  Identities=9%  Similarity=0.078  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHhcc----cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEec
Q 029554           75 DAVAENLLDRLEDCR----KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG  150 (191)
Q Consensus        75 ~~~~~~l~~~l~~~~----~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~  150 (191)
                      ..+.+.+++.+....    .....|||+|+|.|.++..|.+.+...+|+++|+++...+..++.+.     ..++.++.+
T Consensus        23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~-----~~~~~ii~~   97 (322)
T d1i4wa_          23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE-----GSPLQILKR   97 (322)
T ss_dssp             HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT-----TSSCEEECS
T ss_pred             HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc-----CCCcEEEeC
Confidence            445666766654211    13557999999999999999876534689999999999999987753     245777777


Q ss_pred             CCC
Q 029554          151 DEE  153 (191)
Q Consensus       151 d~~  153 (191)
                      |..
T Consensus        98 D~l  100 (322)
T d1i4wa_          98 DPY  100 (322)
T ss_dssp             CTT
T ss_pred             chh
Confidence            754

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.57  E-value=0.00016  Score=58.08  Aligned_cols=113  Identities=8%  Similarity=-0.057  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC----C---------CceEEEEECChhHHHHHHHhhhhccCCC
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG----G---------IEKLIMMDTSYDMLKLCKDAQQDAHNDN  142 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~----~---------~~~v~~vD~s~~~l~~a~~~~~~~~~~~  142 (191)
                      .+.+-+++.+.  +.+..+|+|-+||+|.+...+.+..    .         ...+.|+|+++.+...|+-..--.+...
T Consensus       149 ~Iv~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~  226 (425)
T d2okca1         149 PLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT  226 (425)
T ss_dssp             HHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             hhhHhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcc
Confidence            34545554444  4567799999999999987665421    1         1359999999999988876553211122


Q ss_pred             CceeeEecCCCCCCCCCCCcceEEeCCcc--cCcC--------------C-hHHHHHHHHhccCCC
Q 029554          143 IETCFVVGDEEFLPLKESSLDLAISCLGL--HWTN--------------D-LPGAMIQVSIFLLPD  191 (191)
Q Consensus       143 ~~~~~~~~d~~~l~~~~~~fDlVis~~~l--~~~~--------------d-~~~~l~~i~r~Lkpg  191 (191)
                      ....+...|....+ +...||+|++|--.  .+..              + -..++..+.+.|+||
T Consensus       227 ~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~  291 (425)
T d2okca1         227 DRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG  291 (425)
T ss_dssp             SCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE
T ss_pred             ccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCC
Confidence            23456667755433 45789999998433  2211              1 124677777777764

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.50  E-value=8.3e-05  Score=55.56  Aligned_cols=81  Identities=10%  Similarity=0.021  Sum_probs=58.4

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc-CC------CCceeeEecCC-CCCCCCCCCc
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH-ND------NIETCFVVGDE-EFLPLKESSL  162 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-~~------~~~~~~~~~d~-~~l~~~~~~f  162 (191)
                      ...+|||.-||.|..+..++..+  ++|+++|-++.+....++...... +.      ..+++++.+|. +.+.-...+|
T Consensus        88 ~~~~VlD~TaGlG~Da~vlA~~G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~  165 (250)
T d2oyra1          88 YLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRP  165 (250)
T ss_dssp             BCCCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCC
T ss_pred             CCCEEEECCCcccHHHHHHHhCC--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCC
Confidence            34589999999999999999988  899999999987666654433211 11      23688999984 4444335679


Q ss_pred             ceEEeCCcccC
Q 029554          163 DLAISCLGLHW  173 (191)
Q Consensus       163 DlVis~~~l~~  173 (191)
                      |+|+.--.+.+
T Consensus       166 DvIYlDPMFp~  176 (250)
T d2oyra1         166 QVVYLDPMFPH  176 (250)
T ss_dssp             SEEEECCCCCC
T ss_pred             CEEEECCCCcc
Confidence            99997655543

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00031  Score=53.62  Aligned_cols=78  Identities=6%  Similarity=-0.132  Sum_probs=59.3

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC---CCCcce
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK---ESSLDL  164 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~---~~~fDl  164 (191)
                      ..++.+|||++||+|.=+..++.. .+...++++|+++.-++..++++.+  ....++.+...|...++..   .+.||.
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r--~g~~~~~~~~~d~~~~~~~~~~~~~fD~  169 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR--AGVSCCELAEEDFLAVSPSDPRYHEVHY  169 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH--TTCCSEEEEECCGGGSCTTCGGGTTEEE
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHh--cCccceeeeehhhhhhcccccccceeeE
Confidence            567889999999999988777654 3457899999999999998888776  3445677777776654322   257999


Q ss_pred             EEeC
Q 029554          165 AISC  168 (191)
Q Consensus       165 Vis~  168 (191)
                      |+..
T Consensus       170 VL~D  173 (293)
T d2b9ea1         170 ILLD  173 (293)
T ss_dssp             EEEC
T ss_pred             Eeec
Confidence            9863

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.00025  Score=53.90  Aligned_cols=77  Identities=10%  Similarity=-0.083  Sum_probs=55.8

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-CCCCCCcceEEe
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-PLKESSLDLAIS  167 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~~~~~~fDlVis  167 (191)
                      ..++.+|||+++|+|.=+..+++......++++|+++.-+...+++....  ....+.....|.... ....+.||.|+.
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~--g~~~~~~~~~~~~~~~~~~~~~fd~IL~  177 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL--GMKATVKQGDGRYPSQWCGEQQFDRILL  177 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT--TCCCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcc--cccceeeeccccccchhcccccccEEEE
Confidence            56888999999999999888887765678999999999998888887652  222233333333221 123467999986

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.18  E-value=0.00065  Score=52.28  Aligned_cols=77  Identities=6%  Similarity=-0.052  Sum_probs=58.3

Q ss_pred             ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEe
Q 029554           89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAIS  167 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis  167 (191)
                      ..++.+|||++||+|.=+..++... ....++++|.++.-+...+++..+.  ...++.+...|...++...+.||.|+.
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~--~~~~i~~~~~d~~~~~~~~~~fD~ILv  191 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL--GVLNVILFHSSSLHIGELNVEFDKILL  191 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH--TCCSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHH--HhhccccccccccccccccccccEEEE
Confidence            5688899999999998777776542 3468999999999988888777652  334566666666555555678999986

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.04  E-value=0.00034  Score=55.30  Aligned_cols=96  Identities=9%  Similarity=-0.149  Sum_probs=63.5

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC-------------CCCceeeEecCCCCCC-
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN-------------DNIETCFVVGDEEFLP-  156 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-------------~~~~~~~~~~d~~~l~-  156 (191)
                      .+.+|||..||+|..+..++...+..+|+.+|+|+..++.++++.+....             ....+.+...|...+. 
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            45689999999999998766544567999999999999999988764110             0112334444432211 


Q ss_pred             CCCCCcceEEeCCcccCcCChHHHHHHHHhccCC
Q 029554          157 LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                      -....||+|...    -...+..++....+.++.
T Consensus       125 ~~~~~fDvIDiD----PfGs~~pfldsAi~a~~~  154 (375)
T d2dula1         125 ERHRYFHFIDLD----PFGSPMEFLDTALRSAKR  154 (375)
T ss_dssp             HSTTCEEEEEEC----CSSCCHHHHHHHHHHEEE
T ss_pred             hhcCcCCcccCC----CCCCcHHHHHHHHHHhcc
Confidence            123569998753    244566677777666653

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.002  Score=52.85  Aligned_cols=112  Identities=7%  Similarity=-0.081  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc----CC--------------CceEEEEECChhHHHHHHHhhhhc
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR----GG--------------IEKLIMMDTSYDMLKLCKDAQQDA  138 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~----~~--------------~~~v~~vD~s~~~l~~a~~~~~~~  138 (191)
                      +..-+++.+.  +.++.+|+|-+||+|.+.....+.    ..              ...++|+|+++.+...|+-..-- 
T Consensus       152 Iv~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l-  228 (524)
T d2ar0a1         152 LIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL-  228 (524)
T ss_dssp             HHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT-
T ss_pred             hhHhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHh-
Confidence            4444444443  456779999999999997655432    10              12689999999999888765431 


Q ss_pred             cCCCC----ceeeEecCCCCC-CCCCCCcceEEeCCcc--cCcC-----------Ch-HHHHHHHHhccCCC
Q 029554          139 HNDNI----ETCFVVGDEEFL-PLKESSLDLAISCLGL--HWTN-----------DL-PGAMIQVSIFLLPD  191 (191)
Q Consensus       139 ~~~~~----~~~~~~~d~~~l-~~~~~~fDlVis~~~l--~~~~-----------d~-~~~l~~i~r~Lkpg  191 (191)
                      .....    ...+...+.... .....+||+|++|--+  .+..           +. ..++..+.+.|+||
T Consensus       229 ~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~g  300 (524)
T d2ar0a1         229 HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG  300 (524)
T ss_dssp             TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred             hcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcccc
Confidence            01100    112222332211 1234579999998422  2211           11 24788888888774

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.15  E-value=0.017  Score=40.83  Aligned_cols=95  Identities=14%  Similarity=0.024  Sum_probs=58.7

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-----C-CCCCC
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-----P-LKESS  161 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-----~-~~~~~  161 (191)
                      .+++.+||-+|||. |..+..+++.....+|+++|.++.-++.+++....        .++....+.+     . .....
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~--------~~~~~~~~~~~~~i~~~t~g~g   94 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE--------IADLSLDTPLHEQIAALLGEPE   94 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE--------EEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcccc--------EEEeCCCcCHHHHHHHHhCCCC
Confidence            45888999999998 55566666554457999999999999988765311        1111111110     0 12346


Q ss_pred             cceEEeCCccc------C---cCChHHHHHHHHhccCCC
Q 029554          162 LDLAISCLGLH------W---TNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       162 fDlVis~~~l~------~---~~d~~~~l~~i~r~Lkpg  191 (191)
                      +|.++-.-...      +   .......+....++++|+
T Consensus        95 ~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~g  133 (195)
T d1kola2          95 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA  133 (195)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE
T ss_pred             cEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcC
Confidence            88888654311      1   123456788888887764

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.92  E-value=0.0089  Score=44.86  Aligned_cols=57  Identities=11%  Similarity=0.049  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD  137 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~  137 (191)
                      .+.++++...   ..++..|||.=||+|..+......+  .+++|+|+++..++.+++++.+
T Consensus       238 ~L~~rlI~~~---s~~gdiVlDpF~GSGTT~~AA~~lg--R~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         238 KLPEFFIRML---TEPDDLVVDIFGGSNTTGLVAERES--RKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             HHHHHHHHHH---CCTTCEEEETTCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHHHhhhhc---ccCCCEEEecCCCCcHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHHHh
Confidence            3444555332   5588999999999999999888877  9999999999999999988753

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.79  E-value=0.014  Score=42.46  Aligned_cols=55  Identities=9%  Similarity=0.006  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhh
Q 029554           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ  136 (191)
Q Consensus        77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~  136 (191)
                      +.++++...   ..++..|||-=||+|..+......+  .+++|+|+++..++.|++++.
T Consensus       201 L~~~lI~~~---s~~gd~VlDpF~GSGTT~~aa~~~~--R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         201 LIERIIRAS---SNPNDLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHH---CCTTCEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHh---CCCCCEEEECCCCchHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHc
Confidence            344444333   4578899999999999998888877  999999999999999998864

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=95.79  E-value=0.042  Score=42.60  Aligned_cols=63  Identities=2%  Similarity=-0.166  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHhccc-CCCeEEEEcCCccHHHHHHhhcC-------CCceEEEEECChhHHHHHHHhhh
Q 029554           74 VDAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRGRG-------GIEKLIMMDTSYDMLKLCKDAQQ  136 (191)
Q Consensus        74 ~~~~~~~l~~~l~~~~~-~~~~VLDlGcG~G~~~~~l~~~~-------~~~~v~~vD~s~~~l~~a~~~~~  136 (191)
                      -..++..+......... ....|+|+|+|+|.++..+....       ...+++.+|+|+.+.+.-++...
T Consensus        61 g~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          61 GELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            33445455544443322 23479999999999988775421       23579999999998776666553

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=95.72  E-value=0.022  Score=44.27  Aligned_cols=83  Identities=12%  Similarity=-0.026  Sum_probs=50.6

Q ss_pred             CeEEEEcCCccHHHHHHhh----------------cCCCceEEEEECChhHHHHHHHhhhhccCCCCc--eeeEecCCCC
Q 029554           93 PTALCLGGSLEAVRRLLRG----------------RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE--TCFVVGDEEF  154 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~----------------~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~--~~~~~~d~~~  154 (191)
                      -+|.|+||..|.++..+..                .-|.-+|..-|.-..-....=+..........+  +.-+.+.+-.
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~  132 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence            3699999999988754332                124557888887665554443333221111111  1222234433


Q ss_pred             CCCCCCCcceEEeCCcccCcC
Q 029554          155 LPLKESSLDLAISCLGLHWTN  175 (191)
Q Consensus       155 l~~~~~~fDlVis~~~l~~~~  175 (191)
                      -=||+++.|+++|..+|||+.
T Consensus       133 rLfP~~Slh~~~Ss~alHWLS  153 (359)
T d1m6ex_         133 RLFPRNTLHFIHSSYSLMWLS  153 (359)
T ss_dssp             CCSCTTCBSCEEEESCTTBCS
T ss_pred             hcCCCCceEEeeehhhhhhhh
Confidence            337889999999999999974

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.61  E-value=0.0097  Score=41.35  Aligned_cols=46  Identities=9%  Similarity=-0.058  Sum_probs=37.3

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHh
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA  134 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~  134 (191)
                      ..++.+||=+|||. |..+..+++.....+|+++|.++.-++.+++-
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l   71 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY   71 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh
Confidence            45788999999986 77777777765556899999999988888654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.29  E-value=0.14  Score=34.65  Aligned_cols=88  Identities=16%  Similarity=0.076  Sum_probs=54.4

Q ss_pred             ccCCCeEEEEcCC-ccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           89 RKTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        89 ~~~~~~VLDlGcG-~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+++.+||-+||| .|.....+++.. ..+++++|.++.-++.+++....       .. +..+.....          .
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~-------~~-~~~~~~~~~~~~~~~~~~~~   94 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGAD-------VT-LVVDPAKEEESSIIERIRSA   94 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCS-------EE-EECCTTTSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCc-------EE-Eeccccccccchhhhhhhcc
Confidence            4578899999998 455555555543 27899999999999888764321       11 111111100          1


Q ss_pred             CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          158 KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ..+.+|+|+-.-.      -+..+....++|+|+
T Consensus        95 ~g~g~D~vid~~g------~~~~~~~a~~~~~~~  122 (170)
T d1e3ja2          95 IGDLPNVTIDCSG------NEKCITIGINITRTG  122 (170)
T ss_dssp             SSSCCSEEEECSC------CHHHHHHHHHHSCTT
T ss_pred             cccCCceeeecCC------ChHHHHHHHHHHhcC
Confidence            1246898875433      245677777888774

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.98  E-value=0.049  Score=37.03  Aligned_cols=85  Identities=15%  Similarity=0.089  Sum_probs=52.5

Q ss_pred             eEEEEcCCc-c-HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcc
Q 029554           94 TALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGL  171 (191)
Q Consensus        94 ~VLDlGcG~-G-~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l  171 (191)
                      +|+=+|||. | .++..|.+.+...+|+++|.++..++.+++...        +.....+.+..  .....|+|+..--.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~--------~~~~~~~~~~~--~~~~~dlIila~p~   72 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI--------IDEGTTSIAKV--EDFSPDFVMLSSPV   72 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS--------CSEEESCGGGG--GGTCCSEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc--------chhhhhhhhhh--hccccccccccCCc
Confidence            578899984 3 445566666655789999999999998876431        11122222221  22357888865443


Q ss_pred             cCcCChHHHHHHHHhccCCC
Q 029554          172 HWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       172 ~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +   ....++.++...++++
T Consensus        73 ~---~~~~vl~~l~~~~~~~   89 (171)
T d2g5ca2          73 R---TFREIAKKLSYILSED   89 (171)
T ss_dssp             H---HHHHHHHHHHHHSCTT
T ss_pred             h---hhhhhhhhhhcccccc
Confidence            2   3456677777777654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.94  E-value=0.029  Score=41.16  Aligned_cols=57  Identities=19%  Similarity=0.107  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh
Q 029554           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD  137 (191)
Q Consensus        76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~  137 (191)
                      .+..+++...   ..++..|||-=||+|..+......+  .+++|+|+++...+.+++++..
T Consensus       195 ~L~~~~I~~~---s~~gdiVLDpF~GSGTT~~Aa~~lg--R~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         195 AVIERLVRAL---SHPGSTVLDFFAGSGVTARVAIQEG--RNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             HHHHHHHHHH---SCTTCEEEETTCTTCHHHHHHHHHT--CEEEEEESSTHHHHHHHHHHHH
T ss_pred             hHHHHHHHhh---cCCCCEEEecCCCCcHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHH
Confidence            3444555432   4588899999999999998888877  8999999999999999998864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.88  E-value=0.078  Score=36.50  Aligned_cols=88  Identities=13%  Similarity=0.078  Sum_probs=56.9

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC-CCCC------CCCCC
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD-EEFL------PLKES  160 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d-~~~l------~~~~~  160 (191)
                      ..++.+||=+|||. |..+..+++......|+.+|+++.-++.+++-..        ..++... .+..      ....+
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga--------~~~i~~~~~~~~~~~~~~~~~~~   97 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA--------TDCLNPRELDKPVQDVITELTAG   97 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC--------SEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC--------CcccCCccchhhhhhhHhhhhcC
Confidence            45788999999987 7777777776655789999999998888876421        1111111 1100      01235


Q ss_pred             CcceEEeCCcccCcCChHHHHHHHHhccCC
Q 029554          161 SLDLAISCLGLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       161 ~fDlVis~~~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                      .+|+|+-+-.      .+.++.+..+.|+|
T Consensus        98 G~d~vie~~G------~~~~~~~a~~~~~~  121 (174)
T d1e3ia2          98 GVDYSLDCAG------TAQTLKAAVDCTVL  121 (174)
T ss_dssp             CBSEEEESSC------CHHHHHHHHHTBCT
T ss_pred             CCcEEEEecc------cchHHHHHHHHhhc
Confidence            6899976533      24567777777776

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.48  E-value=0.08  Score=35.79  Aligned_cols=81  Identities=16%  Similarity=0.120  Sum_probs=50.2

Q ss_pred             eEEEEcCC--ccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcc
Q 029554           94 TALCLGGS--LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGL  171 (191)
Q Consensus        94 ~VLDlGcG--~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l  171 (191)
                      +|.=||+|  .+.++..|.+.+  .+|++.|.++..++.+++...        +.....+.+.+    ...|+|+...-.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g--~~V~~~d~~~~~~~~a~~~~~--------~~~~~~~~~~~----~~~DiIilavp~   67 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRG--HYLIGVSRQQSTCEKAVERQL--------VDEAGQDLSLL----QTAKIIFLCTPI   67 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTS--------CSEEESCGGGG----TTCSEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCC--CEEEEEECCchHHHHHHHhhc--------cceeeeecccc----cccccccccCcH
Confidence            46667887  345566666666  799999999988887765321        11122223322    357998864332


Q ss_pred             cCcCChHHHHHHHHhccCCC
Q 029554          172 HWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       172 ~~~~d~~~~l~~i~r~Lkpg  191 (191)
                         .....++.++...|+++
T Consensus        68 ---~~~~~vl~~l~~~l~~~   84 (165)
T d2f1ka2          68 ---QLILPTLEKLIPHLSPT   84 (165)
T ss_dssp             ---HHHHHHHHHHGGGSCTT
T ss_pred             ---hhhhhhhhhhhhhcccc
Confidence               23456778887777764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.29  Score=33.00  Aligned_cols=89  Identities=16%  Similarity=0.101  Sum_probs=53.5

Q ss_pred             ccCCCeEEEEcCCccH-HHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--------CCC
Q 029554           89 RKTFPTALCLGGSLEA-VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LKE  159 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~-~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--------~~~  159 (191)
                      ..++.+||=+|||+.. ....+++.....+|+++|.++.-++.+++-...        .+...+.+...        ...
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~--------~~~~~~~~~~~~~~~~~~~~~g   95 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD--------LVLQISKESPQEIARKVEGQLG   95 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS--------EEEECSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc--------ccccccccccccccccccccCC
Confidence            4578899999998654 344455544445899999999999988764211        11111111100        012


Q ss_pred             CCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554          160 SSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       160 ~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      ..+|+|+-.-+      -...+....+.++||
T Consensus        96 ~g~Dvvid~~G------~~~~~~~a~~~~~~g  121 (171)
T d1pl8a2          96 CKPEVTIECTG------AEASIQAGIYATRSG  121 (171)
T ss_dssp             SCCSEEEECSC------CHHHHHHHHHHSCTT
T ss_pred             CCceEEEeccC------CchhHHHHHHHhcCC
Confidence            46898886543      134566777777764

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.16  Score=36.87  Aligned_cols=80  Identities=14%  Similarity=0.052  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+..||=.|++.|   .++..|++.+  .+|+.+|.+++-++...+....   ...++..+..|+....          -
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G--~~V~l~~r~~~~l~~~~~~~~~---~~~~~~~~~~Dvs~~~~v~~~~~~i~~   80 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLK--SKLVLWDINKHGLEETAAKCKG---LGAKVHTFVVDCSNREDIYSSAKKVKA   80 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            4667888888877   4566677777  8999999999988888777654   3456778888876532          1


Q ss_pred             CCCCcceEEeCCcccCcC
Q 029554          158 KESSLDLAISCLGLHWTN  175 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~  175 (191)
                      ..+..|+++.|.++.+..
T Consensus        81 ~~g~idilinnag~~~~~   98 (244)
T d1yb1a_          81 EIGDVSILVNNAGVVYTS   98 (244)
T ss_dssp             HTCCCSEEEECCCCCCCC
T ss_pred             HcCCCceeEeeccccccc
Confidence            236799999998877653

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=0.18  Score=36.61  Aligned_cols=87  Identities=20%  Similarity=0.205  Sum_probs=59.9

Q ss_pred             CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CC
Q 029554           92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LK  158 (191)
Q Consensus        92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~  158 (191)
                      +..+|=.|++.|   .....|++.+  .+|+.+|.+++-++.+.+..... ....++.++..|+....          -.
T Consensus         3 GKvalITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKG--AKVALVDWNLEAGVQCKAALHEQ-FEPQKTLFIQCDVADQQQLRDTFRKVVDH   79 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHTTT-SCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHh-cCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence            556788887766   3355566667  89999999998888777665431 12346778888876532          01


Q ss_pred             CCCcceEEeCCcccCcCChHHHH
Q 029554          159 ESSLDLAISCLGLHWTNDLPGAM  181 (191)
Q Consensus       159 ~~~fDlVis~~~l~~~~d~~~~l  181 (191)
                      -+..|++|.|.......+....+
T Consensus        80 ~G~iDilVnnAg~~~~~~~~~~~  102 (254)
T d2gdza1          80 FGRLDILVNNAGVNNEKNWEKTL  102 (254)
T ss_dssp             HSCCCEEEECCCCCCSSSHHHHH
T ss_pred             cCCcCeecccccccccccchhee
Confidence            25799999999888776655443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.53  E-value=0.094  Score=35.89  Aligned_cols=88  Identities=16%  Similarity=0.113  Sum_probs=52.7

Q ss_pred             ccCCCeEEEEcCCcc-HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-----CCCCCCc
Q 029554           89 RKTFPTALCLGGSLE-AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-----PLKESSL  162 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G-~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-----~~~~~~f  162 (191)
                      ..++.+||=+|||.- .....+++......++.+|.++.-++.+++-..        ..++..+.+..     .+.++.|
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga--------~~~i~~~~~~~~~~i~~~t~gg~   97 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA--------THVINSKTQDPVAAIKEITDGGV   97 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC--------SEEEETTTSCHHHHHHHHTTSCE
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC--------eEEEeCCCcCHHHHHHHHcCCCC
Confidence            457889999999753 334455544345688999999998888876421        12222221111     1234579


Q ss_pred             ceEEeCCcccCcCChHHHHHHHHhccCC
Q 029554          163 DLAISCLGLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       163 DlVis~~~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                      |+|+-+-.      ....+....++++|
T Consensus        98 D~vid~~G------~~~~~~~~~~~~~~  119 (174)
T d1f8fa2          98 NFALESTG------SPEILKQGVDALGI  119 (174)
T ss_dssp             EEEEECSC------CHHHHHHHHHTEEE
T ss_pred             cEEEEcCC------cHHHHHHHHhcccC
Confidence            99985432      23455666666665

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.72  E-value=0.11  Score=35.73  Aligned_cols=46  Identities=20%  Similarity=0.182  Sum_probs=35.1

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHh
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA  134 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~  134 (191)
                      ..++.+||-+|||. |.....+++.....+|+++|.++.-++.+++-
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence            35788999999974 56666666654445899999999999888654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.70  E-value=0.11  Score=38.04  Aligned_cols=79  Identities=14%  Similarity=0.043  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.+|.+++-++.+.+.+..   ...++.++..|+....          -
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~~~~~~~~l~~---~g~~~~~~~~Dvs~~~~~~~~~~~~~~   84 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAG--ASVVVSDINADAANHVVDEIQQ---LGGQAFACRCDITSEQELSALADFAIS   84 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTT--CEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHH---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            5667887777665   3345566667  8999999999888887777654   3345777888876421          0


Q ss_pred             CCCCcceEEeCCcccCc
Q 029554          158 KESSLDLAISCLGLHWT  174 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~  174 (191)
                      .-+..|++|.|.+..+.
T Consensus        85 ~~g~iDilvnnAG~~~~  101 (255)
T d1fmca_          85 KLGKVDILVNNAGGGGP  101 (255)
T ss_dssp             HHSSCCEEEECCCCCCC
T ss_pred             HcCCCCEeeeCCcCCCC
Confidence            11679999999876543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.16  Score=34.53  Aligned_cols=86  Identities=13%  Similarity=-0.006  Sum_probs=51.6

Q ss_pred             ccCCCeEEEEcC--CccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC------CCCCC
Q 029554           89 RKTFPTALCLGG--SLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL------PLKES  160 (191)
Q Consensus        89 ~~~~~~VLDlGc--G~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l------~~~~~  160 (191)
                      .+++.+||-.|+  |.|.....+++.. ..++++++.+++-++.+++...      .  .++......+      .....
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga------~--~vi~~~~~~~~~~i~~~t~~~   96 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGA------H--EVFNHREVNYIDKIKKYVGEK   96 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTC------S--EEEETTSTTHHHHHHHHHCTT
T ss_pred             CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCc------c--cccccccccHHHHhhhhhccC
Confidence            357889999996  3556666665543 2789999999887777765321      1  1121111110      02345


Q ss_pred             CcceEEeCCcccCcCChHHHHHHHHhccCC
Q 029554          161 SLDLAISCLGLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       161 ~fDlVis~~~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                      .+|+|+.+.+       ...+.+..++|+|
T Consensus        97 g~d~v~d~~g-------~~~~~~~~~~l~~  119 (174)
T d1yb5a2          97 GIDIIIEMLA-------NVNLSKDLSLLSH  119 (174)
T ss_dssp             CEEEEEESCH-------HHHHHHHHHHEEE
T ss_pred             CceEEeeccc-------HHHHHHHHhccCC
Confidence            6999997643       3356666666665

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=92.45  E-value=0.41  Score=34.75  Aligned_cols=79  Identities=20%  Similarity=0.214  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----------
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----------  156 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----------  156 (191)
                      .+.+||=.|+..|   .....|++.+  .+|+.++.++.-++.+.+....   ...++.++..|+....           
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G--~~V~i~~r~~~~l~~~~~~~~~---~~~~~~~~~~D~s~~~~~~~~~~~~~~   79 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLG--ARVYTCSRNEKELDECLEIWRE---KGLNVEGSVCDLLSRTERDKLMQTVAH   79 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh---cCCCceEEEeecCCHHHHHHHHHHHHH
Confidence            4678899998776   4455667777  8999999999888777776654   3455777788876421           


Q ss_pred             CCCCCcceEEeCCcccCc
Q 029554          157 LKESSLDLAISCLGLHWT  174 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~~~  174 (191)
                      .-.+..|+++++..++..
T Consensus        80 ~~~g~idilinnag~~~~   97 (258)
T d1ae1a_          80 VFDGKLNILVNNAGVVIH   97 (258)
T ss_dssp             HTTSCCCEEEECCCCCCC
T ss_pred             HhCCCcEEEecccccccc
Confidence            113678999988877654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.33  E-value=0.47  Score=34.07  Aligned_cols=76  Identities=12%  Similarity=0.029  Sum_probs=53.5

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC------CCCCC
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP------LKESS  161 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~------~~~~~  161 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.+|.++.-++...+...       .+..++.|+....      -.-+.
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G--~~V~~~~r~~~~l~~~~~~~~-------~~~~~~~Dv~d~~~v~~~~~~~g~   76 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATG--ARVVAVSRTQADLDSLVRECP-------GIEPVCVDLGDWEATERALGSVGP   76 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHST-------TCEEEECCTTCHHHHHHHHTTCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcC-------CCeEEEEeCCCHHHHHHHHHHhCC
Confidence            5678899998877   4556677777  899999999987776655442       2556667765321      12267


Q ss_pred             cceEEeCCcccCcC
Q 029554          162 LDLAISCLGLHWTN  175 (191)
Q Consensus       162 fDlVis~~~l~~~~  175 (191)
                      .|++|.|.+..+..
T Consensus        77 iDilVnnAg~~~~~   90 (244)
T d1pr9a_          77 VDLLVNNAAVALLQ   90 (244)
T ss_dssp             CCEEEECCCCCCCB
T ss_pred             ceEEEecccccccc
Confidence            99999998776553

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.09  E-value=0.34  Score=32.70  Aligned_cols=46  Identities=15%  Similarity=-0.043  Sum_probs=33.2

Q ss_pred             ccCCCeEEEEcCCccHH-HHHHhhcCCCceEEEEECChhHHHHHHHh
Q 029554           89 RKTFPTALCLGGSLEAV-RRLLRGRGGIEKLIMMDTSYDMLKLCKDA  134 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~-~~~l~~~~~~~~v~~vD~s~~~l~~a~~~  134 (191)
                      .+++.+||-+|+|.... ...+++......++++|.++.-++.+++.
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~   76 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL   76 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc
Confidence            45788999999976544 34444433347899999999888888764

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.02  E-value=0.31  Score=35.41  Aligned_cols=81  Identities=21%  Similarity=0.079  Sum_probs=56.7

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+..+|=.|++.|   .....|++.+  .+|+.+|.++.-++.+.+..... ....++.++..|+....          -
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G--~~Vv~~~r~~~~l~~~~~~l~~~-~~~~~~~~~~~Dls~~~~v~~~v~~~~~   85 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQG--LKVVGCARTVGNIEELAAECKSA-GYPGTLIPYRCDLSNEEDILSMFSAIRS   85 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHT-TCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhc-CCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            4567899998877   3455666667  89999999998888877766541 22346777888876421          1


Q ss_pred             CCCCcceEEeCCcccCc
Q 029554          158 KESSLDLAISCLGLHWT  174 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~  174 (191)
                      .-+..|++|.|....+.
T Consensus        86 ~~g~iD~lVnnAg~~~~  102 (257)
T d1xg5a_          86 QHSGVDICINNAGLARP  102 (257)
T ss_dssp             HHCCCSEEEECCCCCCC
T ss_pred             hcCCCCEEEecccccCC
Confidence            12679999998876554

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.86  E-value=0.2  Score=33.85  Aligned_cols=46  Identities=17%  Similarity=0.153  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEcCC--ccHHHHHHhhcCCCceEEEEECChhHHHHHHHh
Q 029554           89 RKTFPTALCLGGS--LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA  134 (191)
Q Consensus        89 ~~~~~~VLDlGcG--~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~  134 (191)
                      ..++.+||=+||+  .|..+..+.+......|+++|.++.-++.+++.
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~   72 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA   72 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc
Confidence            5578899999973  445555554443457899999999988888664

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.48  E-value=0.41  Score=32.34  Aligned_cols=47  Identities=15%  Similarity=0.060  Sum_probs=35.0

Q ss_pred             ccCCCeEEEEcCCccH-HHHHHhhcCCCceEEEEECChhHHHHHHHhh
Q 029554           89 RKTFPTALCLGGSLEA-VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~-~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~  135 (191)
                      .+++.+||=+|+|.+. ....++.......|+++|.++.-++.+++..
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G   73 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG   73 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC
Confidence            4578899999997543 3444445444689999999999998887653

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.41  E-value=0.15  Score=35.49  Aligned_cols=43  Identities=9%  Similarity=0.089  Sum_probs=33.1

Q ss_pred             CCCeEEEEcCCccHHHH-HHh-hcCCCceEEEEECChhHHHHHHHhh
Q 029554           91 TFPTALCLGGSLEAVRR-LLR-GRGGIEKLIMMDTSYDMLKLCKDAQ  135 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~-~l~-~~~~~~~v~~vD~s~~~l~~a~~~~  135 (191)
                      ++.+||=||+|.-.+.. ..+ ..+  ++|+.+|.++..+++.++..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lG--A~V~v~D~~~~~~~~l~~l~   72 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVESLG   72 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHHTT
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHHHhh
Confidence            67799999999765533 333 334  89999999999999887754

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.34  E-value=0.28  Score=35.99  Aligned_cols=80  Identities=16%  Similarity=0.138  Sum_probs=56.0

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.+|.+++-++.+.+..........++..+..|+....          -
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEG--AQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence            4567788888776   3455666777  89999999998888887776542223346788888876432          0


Q ss_pred             CCCCcceEEeCCccc
Q 029554          158 KESSLDLAISCLGLH  172 (191)
Q Consensus       158 ~~~~fDlVis~~~l~  172 (191)
                      .-+..|++|.|.+..
T Consensus        81 ~~G~iDilVnnAG~~   95 (274)
T d1xhla_          81 KFGKIDILVNNAGAN   95 (274)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HcCCceEEEeecccc
Confidence            125789999987654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=91.28  E-value=0.69  Score=33.47  Aligned_cols=79  Identities=18%  Similarity=0.128  Sum_probs=56.0

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----------
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----------  156 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----------  156 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.+|.+++-++.+.+....   ...++.++..|+....           
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLG--ASVYTCSRNQKELNDCLTQWRS---KGFKVEASVCDLSSRSERQELMNTVAN   81 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh---cCCCceEEEeeCCCHHHHHHHHHHHHH
Confidence            4667888888766   3455666777  8999999999988888777654   3456777888875321           


Q ss_pred             CCCCCcceEEeCCcccCc
Q 029554          157 LKESSLDLAISCLGLHWT  174 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~~~  174 (191)
                      .-.+..|++|.|.+..+.
T Consensus        82 ~~~~~idilvnnAG~~~~   99 (259)
T d2ae2a_          82 HFHGKLNILVNNAGIVIY   99 (259)
T ss_dssp             HTTTCCCEEEECCCCCCC
T ss_pred             HhCCCceEEEECCceecc
Confidence            012469999999876654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.08  E-value=0.22  Score=36.18  Aligned_cols=80  Identities=18%  Similarity=0.165  Sum_probs=54.5

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.+|.+++-++...+....  ....++.++..|+....          -
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~l~~--~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAG--CSVVVASRNLEEASEAAQKLTE--KYGVETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH--HHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHH--HhCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4567888888776   3455667777  8999999999877766655432  12345777788876421          0


Q ss_pred             CCCCcceEEeCCcccCc
Q 029554          158 KESSLDLAISCLGLHWT  174 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~  174 (191)
                      .-+..|++|.|.++.+.
T Consensus        80 ~~g~iDiLVnnAG~~~~   96 (251)
T d1vl8a_          80 KFGKLDTVVNAAGINRR   96 (251)
T ss_dssp             HHSCCCEEEECCCCCCC
T ss_pred             HcCCCCEEEECCCCCCC
Confidence            12579999999876554

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.93  E-value=0.54  Score=33.92  Aligned_cols=79  Identities=14%  Similarity=0.153  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+..+|=.|++.|   .....|++.+  .+|+.+|.+++.++.+.+.+..   ...++.++..|+....          -
T Consensus         9 enKvalITGas~GIG~a~a~~la~~G--a~V~~~~r~~~~l~~~~~~l~~---~g~~~~~~~~Dvt~~~~v~~~~~~~~~   83 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSV--SHVICISRTQKSCDSVVDEIKS---FGYESSGYAGDVSKKEEISEVINKILT   83 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTS--SEEEEEESSHHHHHHHHHHHHT---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3556777787666   3344555666  8999999999988888777653   3445778888876421          1


Q ss_pred             CCCCcceEEeCCcccCc
Q 029554          158 KESSLDLAISCLGLHWT  174 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~  174 (191)
                      .-+..|++|.|.+..+.
T Consensus        84 ~~g~iDilvnnag~~~~  100 (251)
T d2c07a1          84 EHKNVDILVNNAGITRD  100 (251)
T ss_dssp             HCSCCCEEEECCCCCCC
T ss_pred             hcCCceeeeeccccccc
Confidence            12679999998876554

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=90.88  E-value=0.051  Score=37.45  Aligned_cols=94  Identities=9%  Similarity=-0.007  Sum_probs=54.6

Q ss_pred             CCCeEEEEcCCccHH-HHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554           91 TFPTALCLGGSLEAV-RRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL  169 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~-~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~  169 (191)
                      ++.+|+=+|+|.-.+ +...+... ..+|+.+|.++..+++.+.....      ++.....+.+.+.-.-...|+||...
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~------~~~~~~~~~~~l~~~~~~aDivI~aa  103 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS------RVELLYSNSAEIETAVAEADLLIGAV  103 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG------GSEEEECCHHHHHHHHHTCSEEEECC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcc------cceeehhhhhhHHHhhccCcEEEEee
Confidence            467999999996544 33333332 38999999999998888776532      13334333222211113579998865


Q ss_pred             cccCcCChHHHHHHHHhccCCC
Q 029554          170 GLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       170 ~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      -+.--.-|.-+=+++.+.+|||
T Consensus       104 lipG~~aP~lIt~~mv~~Mk~G  125 (168)
T d1pjca1         104 LVPGRRAPILVPASLVEQMRTG  125 (168)
T ss_dssp             CCTTSSCCCCBCHHHHTTSCTT
T ss_pred             ecCCcccCeeecHHHHhhcCCC
Confidence            4332222333344555555554

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.85  E-value=0.13  Score=34.81  Aligned_cols=45  Identities=7%  Similarity=-0.096  Sum_probs=34.5

Q ss_pred             ccCCCeEEEEcCC-ccHHHHHHhhcCCCceEEEEECChhHHHHHHHh
Q 029554           89 RKTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA  134 (191)
Q Consensus        89 ~~~~~~VLDlGcG-~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~  134 (191)
                      ..++.+||-+|+| .|..+..+++.. ..+++++|.|+.-++.+++-
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhcc
Confidence            4588899999998 556666665442 27899999999999888764

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.82  E-value=0.28  Score=35.89  Aligned_cols=80  Identities=15%  Similarity=0.127  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.+|.+++-++.+.+.+........++..+..|+....          -
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~G--a~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEG--ANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4567788887766   4455666777  89999999999888887776542223346788888876421          1


Q ss_pred             CCCCcceEEeCCccc
Q 029554          158 KESSLDLAISCLGLH  172 (191)
Q Consensus       158 ~~~~fDlVis~~~l~  172 (191)
                      .-+..|++|.|.+..
T Consensus        82 ~~g~iDilvnnAG~~   96 (272)
T d1xkqa_          82 QFGKIDVLVNNAGAA   96 (272)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HhCCceEEEeCCccc
Confidence            125799999987654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.59  E-value=0.28  Score=35.76  Aligned_cols=80  Identities=20%  Similarity=0.135  Sum_probs=53.8

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+..+|=.|++.|   .....|++.+  .+|+.+|.+++.++.+.+..........++.++..|+....          -
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREG--AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4556777787666   3355666767  89999999999888887766542223346788888876421          1


Q ss_pred             CCCCcceEEeCCccc
Q 029554          158 KESSLDLAISCLGLH  172 (191)
Q Consensus       158 ~~~~fDlVis~~~l~  172 (191)
                      .-+..|++|.|.+..
T Consensus        82 ~~g~iDilvnnAG~~   96 (264)
T d1spxa_          82 KFGKLDILVNNAGAA   96 (264)
T ss_dssp             HHSCCCEEEECCC--
T ss_pred             HhCCCCEeecccccc
Confidence            126799999987764

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=90.48  E-value=0.5  Score=34.36  Aligned_cols=77  Identities=19%  Similarity=0.163  Sum_probs=53.0

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+..+|=.|++.|   .....|++.+  .+|+.+|.+++-++.+.+...    ....+.++..|+....          -
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~l~----~~~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYG--AKVVIADIADDHGQKVCNNIG----SPDVISFVHCDVTKDEDVRNLVDTTIA   78 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHC----CTTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhc----CCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4567888888776   3345566667  899999999988877766653    2334667778865421          0


Q ss_pred             CCCCcceEEeCCcccC
Q 029554          158 KESSLDLAISCLGLHW  173 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~  173 (191)
                      .-+..|++|.|.+..+
T Consensus        79 ~~g~iD~lVnnAG~~~   94 (268)
T d2bgka1          79 KHGKLDIMFGNVGVLS   94 (268)
T ss_dssp             HHSCCCEEEECCCCCC
T ss_pred             HcCCcceecccccccc
Confidence            1257999999887543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.45  E-value=0.89  Score=30.38  Aligned_cols=46  Identities=13%  Similarity=0.034  Sum_probs=33.2

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHh
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA  134 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~  134 (191)
                      .+++.+||=.|||. |.++..+++......|+++|.++.-++.+++-
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh
Confidence            45788999999873 23344445444457899999999988888764

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.24  E-value=0.19  Score=37.65  Aligned_cols=73  Identities=14%  Similarity=0.064  Sum_probs=49.1

Q ss_pred             CeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---CCCCCcceEEeC
Q 029554           93 PTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---LKESSLDLAISC  168 (191)
Q Consensus        93 ~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---~~~~~fDlVis~  168 (191)
                      -+|+|+=||.|.+...|...+- ..-+.++|+.+...+..+.+...       ..+...|+..+.   ++...+|+++..
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~-------~~~~~~di~~~~~~~~~~~~~Dll~gg   75 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-------TQLLAKTIEGITLEEFDRLSFDMILMS   75 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-------SCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCC-------CCcccCchhhCCHhHcCCCCccEEEee
Confidence            4799999999998888866552 23467999999888877665532       455666766553   222368999876


Q ss_pred             Cccc
Q 029554          169 LGLH  172 (191)
Q Consensus       169 ~~l~  172 (191)
                      .-.+
T Consensus        76 pPCq   79 (343)
T d1g55a_          76 PPCQ   79 (343)
T ss_dssp             CC--
T ss_pred             cccc
Confidence            5443

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.03  E-value=0.77  Score=33.06  Aligned_cols=75  Identities=16%  Similarity=0.065  Sum_probs=52.3

Q ss_pred             EEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CCCCC
Q 029554           95 ALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LKESS  161 (191)
Q Consensus        95 VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~~~~  161 (191)
                      +|=.|++.|   .....|++.+  .+|+.+|.+++-++...+.+..   ...++..+..|+....          -.-+.
T Consensus         4 alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~i~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   78 (255)
T d1gega_           4 ALVTGAGQGIGKAIALRLVKDG--FAVAIADYNDATAKAVASEINQ---AGGHAVAVKVDVSDRDQVFAAVEQARKTLGG   78 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred             EEEcCCccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            466677655   3345666767  8999999999988887776654   3345777888876432          11267


Q ss_pred             cceEEeCCcccCc
Q 029554          162 LDLAISCLGLHWT  174 (191)
Q Consensus       162 fDlVis~~~l~~~  174 (191)
                      .|++|.|.+..+.
T Consensus        79 iDilVnnAG~~~~   91 (255)
T d1gega_          79 FDVIVNNAGVAPS   91 (255)
T ss_dssp             CCEEEECCCCCCC
T ss_pred             ccEEEeccccccc
Confidence            9999999876554

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=89.92  E-value=0.9  Score=33.59  Aligned_cols=69  Identities=16%  Similarity=-0.005  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC-CCCcceEEeCC
Q 029554           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK-ESSLDLAISCL  169 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~-~~~fDlVis~~  169 (191)
                      .+-+|||+=||-|.+...|...+ ..-+.++|+++..++..+.+...         ...+|+..+... -..+|+|+...
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG-~~~v~a~e~d~~a~~~~~~N~~~---------~~~~Di~~~~~~~~~~~Dll~ggp   79 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGE---------KPEGDITQVNEKTIPDHDILCAGF   79 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHHSC---------CCBSCGGGSCGGGSCCCSEEEEEC
T ss_pred             CCCeEEEECccccHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHCCC---------CCcCchhcCchhhcceeeeeeccc
Confidence            45689999999999999888766 45677899999988888777632         123555443311 13589998654

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=89.89  E-value=0.52  Score=34.16  Aligned_cols=77  Identities=16%  Similarity=0.173  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+..+|=.|++.|   .....|++.+  .+|+.+|.+++.++.+.+.+..   ...++..+..|+....          -
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEG--TAIALLDMNREALEKAEASVRE---KGVEARSYVCDVTSEEAVIGTVDSVVR   78 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHT---TTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4667888887766   3456667777  8999999999988888777653   3446777888876421          0


Q ss_pred             CCCCcceEEeCCccc
Q 029554          158 KESSLDLAISCLGLH  172 (191)
Q Consensus       158 ~~~~fDlVis~~~l~  172 (191)
                      .-+..|++|.|.+..
T Consensus        79 ~~g~iDilVnnaG~~   93 (260)
T d1zema1          79 DFGKIDFLFNNAGYQ   93 (260)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HhCCCCeehhhhccc
Confidence            126799999887654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.83  E-value=1.2  Score=31.81  Aligned_cols=75  Identities=16%  Similarity=0.033  Sum_probs=50.9

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC------CCCCC
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP------LKESS  161 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~------~~~~~  161 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.+|.+++-++...+...       .+..+..|+....      -.-+.
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~g~   74 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASG--AKVVAVTRTNSDLVSLAKECP-------GIEPVCVDLGDWDATEKALGGIGP   74 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHST-------TCEEEECCTTCHHHHHHHHTTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhcC-------CCeEEEEeCCCHHHHHHHHHHcCC
Confidence            4677888888766   3455666767  899999999887766655432       2566677765321      11267


Q ss_pred             cceEEeCCcccCc
Q 029554          162 LDLAISCLGLHWT  174 (191)
Q Consensus       162 fDlVis~~~l~~~  174 (191)
                      .|++|.|.+..+.
T Consensus        75 iDilVnnAg~~~~   87 (242)
T d1cyda_          75 VDLLVNNAALVIM   87 (242)
T ss_dssp             CSEEEECCCCCCC
T ss_pred             CeEEEECCccccc
Confidence            9999998876544

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=89.81  E-value=0.53  Score=34.11  Aligned_cols=80  Identities=24%  Similarity=0.183  Sum_probs=55.4

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.+|.+++-++...+..... ....++..+..|+....          -
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~G--a~V~i~~r~~~~l~~~~~~~~~~-~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   79 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEG--AKLSLVDVSSEGLEASKAAVLET-APDAEVLTTVADVSDEAQVEAYVTATTE   79 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHH-CTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhh-CCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence            3567888888777   3466777777  89999999999888776655431 23345777888876422          0


Q ss_pred             CCCCcceEEeCCcccC
Q 029554          158 KESSLDLAISCLGLHW  173 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~  173 (191)
                      .-+..|++|.|.++.+
T Consensus        80 ~~G~iDiLVnnAG~~~   95 (258)
T d1iy8a_          80 RFGRIDGFFNNAGIEG   95 (258)
T ss_dssp             HHSCCSEEEECCCCCC
T ss_pred             HhCCCCEEEECCcccc
Confidence            1267999999987643

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=89.63  E-value=0.92  Score=32.63  Aligned_cols=76  Identities=16%  Similarity=0.175  Sum_probs=52.9

Q ss_pred             eEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CCCC
Q 029554           94 TALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LKES  160 (191)
Q Consensus        94 ~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~~~  160 (191)
                      .+|=-|++.|   .....|++.+  .+|+.+|.+++.++...+.+..   ...++.++..|+....          -.-+
T Consensus         4 ValITGas~GIG~aia~~la~~G--a~V~i~~r~~~~l~~~~~~l~~---~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           4 VALVTGATSGIGLEIARRLGKEG--LRVFVCARGEEGLRTTLKELRE---AGVEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            4466677655   3445566767  8999999999988888777654   3445788888876432          1126


Q ss_pred             CcceEEeCCcccCc
Q 029554          161 SLDLAISCLGLHWT  174 (191)
Q Consensus       161 ~fDlVis~~~l~~~  174 (191)
                      ..|++|.|.+....
T Consensus        79 ~iDilVnnAG~~~~   92 (257)
T d2rhca1          79 PVDVLVNNAGRPGG   92 (257)
T ss_dssp             SCSEEEECCCCCCC
T ss_pred             CCCEEEecccccCC
Confidence            79999998876544

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.43  E-value=0.32  Score=33.21  Aligned_cols=47  Identities=15%  Similarity=0.087  Sum_probs=35.9

Q ss_pred             ccCCCeEEEEcCCccHH-HHHHhhcCCCceEEEEECChhHHHHHHHhh
Q 029554           89 RKTFPTALCLGGSLEAV-RRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~-~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~  135 (191)
                      .+++.+||=+|||...+ ...+++.....+|+++|.+++-++.|++..
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~G   74 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVG   74 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcC
Confidence            45788999999986544 444455544579999999999999998764

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=89.27  E-value=0.62  Score=34.13  Aligned_cols=80  Identities=14%  Similarity=0.137  Sum_probs=54.4

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.+|.++.-++...+....  ....++.++..|+....          -
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~G--a~Vii~~r~~~~l~~~~~~l~~--~~g~~~~~~~~D~~~~~~v~~~~~~~~~   99 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLG--AQCVIASRKMDVLKATAEQISS--QTGNKVHAIQCDVRDPDMVQNTVSELIK   99 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH--HHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHH--hcCCceEEEEecccChHHHHHHhhhhhh
Confidence            4567888888766   4455666767  8999999999877776655533  12344667777765421          1


Q ss_pred             CCCCcceEEeCCcccCc
Q 029554          158 KESSLDLAISCLGLHWT  174 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~  174 (191)
                      ..+..|+++.+.+..+.
T Consensus       100 ~~g~iDilvnnAg~~~~  116 (294)
T d1w6ua_         100 VAGHPNIVINNAAGNFI  116 (294)
T ss_dssp             HTCSCSEEEECCCCCCC
T ss_pred             hccccchhhhhhhhccc
Confidence            23679999998876554

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=89.16  E-value=1.1  Score=32.78  Aligned_cols=70  Identities=10%  Similarity=0.043  Sum_probs=49.7

Q ss_pred             eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC-CCCcceEEeCCccc
Q 029554           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK-ESSLDLAISCLGLH  172 (191)
Q Consensus        94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~-~~~fDlVis~~~l~  172 (191)
                      +|||+=||-|.+..-|...+ ...+.++|+++...+..+.+..        ..++.+|+..+... -...|+++...-.+
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG-~~~~~a~e~d~~a~~~~~~N~~--------~~~~~~Di~~~~~~~~~~~dll~~g~PCq   72 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAG-FRIICANEYDKSIWKTYESNHS--------AKLIKGDISKISSDEFPKCDGIIGGPPCQ   72 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHT-CEEEEEEECCHHHHHHHHHHCC--------SEEEESCTTTSCGGGSCCCSEEEECCCCT
T ss_pred             eEEEeCcCcCHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHHCC--------CCCccCChhhCCHhHcccccEEeeccccc
Confidence            58999999999988887665 4567799999988877766542        34566787765421 13589998754433

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=89.11  E-value=0.29  Score=35.59  Aligned_cols=80  Identities=14%  Similarity=0.056  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .++++|=.|++.|   .....|++.+  .+|+.+|.++.-++...+....  ....++..+..|+....          -
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~~~~--~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAG--ANVAVIYRSAADAVEVTEKVGK--EFGVKTKAYQCDVSNTDIVTKTIQQIDA   83 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTT--EEEEEEESSCTTHHHHHHHHHH--HHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHH--HhCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4567888887766   3455667777  8999999998877666554432  12345777888876421          1


Q ss_pred             CCCCcceEEeCCcccCc
Q 029554          158 KESSLDLAISCLGLHWT  174 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~  174 (191)
                      .-+..|++|.|.+..+.
T Consensus        84 ~~g~iDilVnnAg~~~~  100 (260)
T d1h5qa_          84 DLGPISGLIANAGVSVV  100 (260)
T ss_dssp             HSCSEEEEEECCCCCCC
T ss_pred             HhCCCcEeccccccccc
Confidence            12689999998876554

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.98  E-value=0.85  Score=29.17  Aligned_cols=63  Identities=17%  Similarity=0.236  Sum_probs=40.5

Q ss_pred             eEEEEcCCccHHHHHHh----hcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----CCCCCcceE
Q 029554           94 TALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKESSLDLA  165 (191)
Q Consensus        94 ~VLDlGcG~G~~~~~l~----~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----~~~~~fDlV  165 (191)
                      +|+=+|+  |..+..++    +.+  .+|+.+|.+++.++.+.+..        ...++.+|.....    ..-..+|.+
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g--~~v~vid~d~~~~~~~~~~~--------~~~vi~Gd~~~~~~l~~~~i~~a~~v   69 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKG--HDIVLIDIDKDICKKASAEI--------DALVINGDCTKIKTLEDAGIEDADMY   69 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHC--------SSEEEESCTTSHHHHHHTTTTTCSEE
T ss_pred             EEEEECC--CHHHHHHHHHHHHCC--CCcceecCChhhhhhhhhhh--------hhhhccCcccchhhhhhcChhhhhhh
Confidence            4566665  65655554    444  78999999999888776543        1566778765321    122457888


Q ss_pred             EeC
Q 029554          166 ISC  168 (191)
Q Consensus       166 is~  168 (191)
                      ++.
T Consensus        70 v~~   72 (132)
T d1lssa_          70 IAV   72 (132)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            874

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.83  E-value=0.86  Score=30.16  Aligned_cols=45  Identities=13%  Similarity=-0.058  Sum_probs=32.4

Q ss_pred             ccCCCeEEEEcCCccHH-HHHHhhcCCCceEEEEECChhHHHHHHHh
Q 029554           89 RKTFPTALCLGGSLEAV-RRLLRGRGGIEKLIMMDTSYDMLKLCKDA  134 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~-~~~l~~~~~~~~v~~vD~s~~~l~~a~~~  134 (191)
                      .+++.+||=.|||+-.+ ...+++.. ..+|+++|.++.-++.+++.
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~~   70 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKEL   70 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhhc
Confidence            55788999999976544 33334432 36899999999988888663

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=88.54  E-value=0.65  Score=28.39  Aligned_cols=66  Identities=11%  Similarity=0.222  Sum_probs=39.4

Q ss_pred             CCeEEEEc---CCccHHHHHHhhcCCCceEEEEECChh-HHHHHHHhhhhccCCCCceeeEecCC-CCCCCCCCCcceEE
Q 029554           92 FPTALCLG---GSLEAVRRLLRGRGGIEKLIMMDTSYD-MLKLCKDAQQDAHNDNIETCFVVGDE-EFLPLKESSLDLAI  166 (191)
Q Consensus        92 ~~~VLDlG---cG~G~~~~~l~~~~~~~~v~~vD~s~~-~l~~a~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~~fDlVi  166 (191)
                      ..+|.=+|   +|.+.++..|.+.+  .+|+|.|.... ..+...+.      .   +.+..+.. +.+    ...|+||
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~G--~~VsGSD~~~~~~~~~L~~~------G---i~v~~g~~~~~i----~~~d~vV   72 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNEG--YQISGSDIADGVVTQRLAQA------G---AKIYIGHAEEHI----EGASVVV   72 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHT--CEEEEEESCCSHHHHHHHHT------T---CEEEESCCGGGG----TTCSEEE
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhCC--CEEEEEeCCCChhhhHHHHC------C---CeEEECCccccC----CCCCEEE
Confidence            44566664   34556678888888  89999998643 22222221      1   33444432 223    2479999


Q ss_pred             eCCccc
Q 029554          167 SCLGLH  172 (191)
Q Consensus       167 s~~~l~  172 (191)
                      .+.++.
T Consensus        73 ~S~AI~   78 (96)
T d1p3da1          73 VSSAIK   78 (96)
T ss_dssp             ECTTSC
T ss_pred             ECCCcC
Confidence            888765

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.41  E-value=0.68  Score=33.38  Aligned_cols=74  Identities=15%  Similarity=0.181  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.+|.+++.++...+...       +..++..|+....          -
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~~~-------~~~~~~~Dvs~~~~v~~~~~~~~~   75 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSG--ARVVICDKDESGGRALEQELP-------GAVFILCDVTQEDDVKTLVSETIR   75 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHCT-------TEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhcC-------CCeEEEccCCCHHHHHHHHHHHHH
Confidence            4667888888776   3455666767  899999999988777665442       2667778875421          0


Q ss_pred             CCCCcceEEeCCcccC
Q 029554          158 KESSLDLAISCLGLHW  173 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~  173 (191)
                      .-+..|++|.|.+...
T Consensus        76 ~~g~iDilVnnAG~~~   91 (250)
T d1ydea1          76 RFGRLDCVVNNAGHHP   91 (250)
T ss_dssp             HHSCCCEEEECCCCCC
T ss_pred             hcCCCCEEEecccccc
Confidence            1157999999987553

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.16  E-value=0.68  Score=33.54  Aligned_cols=79  Identities=23%  Similarity=0.262  Sum_probs=54.6

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--------C-C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------L-K  158 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--------~-~  158 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.+|.++.-++.+.+....   ...++..+..|+....        . .
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~G--a~V~~~~r~~~~l~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFG--AVIHTCARNEYELNECLSKWQK---KGFQVTGSVCDASLRPEREKLMQTVSS   81 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh---cCCceEEEeccCCCHHHHHHHHHHHHH
Confidence            4667888888776   3455667777  8999999999888887776654   3345778888876421        0 1


Q ss_pred             --CCCcceEEeCCcccCc
Q 029554          159 --ESSLDLAISCLGLHWT  174 (191)
Q Consensus       159 --~~~fDlVis~~~l~~~  174 (191)
                        .+..|++|.|.+..+.
T Consensus        82 ~~~g~idilvnnAG~~~~   99 (259)
T d1xq1a_          82 MFGGKLDILINNLGAIRS   99 (259)
T ss_dssp             HHTTCCSEEEEECCC---
T ss_pred             HhCCCcccccccccccCC
Confidence              2679999999876543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=87.92  E-value=0.75  Score=33.10  Aligned_cols=78  Identities=14%  Similarity=0.122  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.+|.+++.++.+.+...    ...++.++..|+....          -
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEG--AKVMITGRHSDVGEKAAKSVG----TPDQIQFFQHDSSDEDGWTKLFDATEK   78 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHC----CTTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhC----CCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4566777787665   3355666767  899999999988887766653    2345788888876422          0


Q ss_pred             CCCCcceEEeCCcccCc
Q 029554          158 KESSLDLAISCLGLHWT  174 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~  174 (191)
                      .-+..|++|.|.+..+.
T Consensus        79 ~~G~iDiLVnnAg~~~~   95 (251)
T d1zk4a1          79 AFGPVSTLVNNAGIAVN   95 (251)
T ss_dssp             HHSSCCEEEECCCCCCC
T ss_pred             HhCCceEEEeccccccc
Confidence            12679999998876644

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.88  E-value=0.69  Score=33.54  Aligned_cols=80  Identities=14%  Similarity=0.094  Sum_probs=54.2

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+.++|=.|++.|   .++..|++.+  .+|+.++.+++-++.+.+....  .......+...|.....          -
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G--~~Vil~~r~~~~l~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~   88 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMG--AHVVVTARSKETLQKVVSHCLE--LGAASAHYIAGTMEDMTFAEQFVAQAGK   88 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH--HTCSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHhh--hhcccchhhhhhhhhHHHHHHHHHHHHH
Confidence            4678888898877   4456667777  8999999999988887665433  23344566666655321          1


Q ss_pred             CCCCcceEEeCCcccCc
Q 029554          158 KESSLDLAISCLGLHWT  174 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~  174 (191)
                      ..+..|+++.|.+..+.
T Consensus        89 ~~g~~~~li~nag~~~~  105 (269)
T d1xu9a_          89 LMGGLDMLILNHITNTS  105 (269)
T ss_dssp             HHTSCSEEEECCCCCCC
T ss_pred             HhCCccccccccccccc
Confidence            12578999888776543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=86.69  E-value=0.45  Score=32.33  Aligned_cols=46  Identities=13%  Similarity=0.013  Sum_probs=34.5

Q ss_pred             ccCCCeEEEEcCCccHH-HHHHhhcCCCceEEEEECChhHHHHHHHh
Q 029554           89 RKTFPTALCLGGSLEAV-RRLLRGRGGIEKLIMMDTSYDMLKLCKDA  134 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~-~~~l~~~~~~~~v~~vD~s~~~l~~a~~~  134 (191)
                      .+++.+||=+|||...+ +..+++.....+|+++|+++.-++.+++.
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            46788999999986544 34444443357899999999999999764

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=86.63  E-value=0.58  Score=28.27  Aligned_cols=59  Identities=14%  Similarity=0.059  Sum_probs=36.5

Q ss_pred             cCCccHHHHHHhhcCCCceEEEEECChh-HHHHHHHhhhhccCCCCceeeEec-CCCCCCCCCCCcceEEeCCccc
Q 029554           99 GGSLEAVRRLLRGRGGIEKLIMMDTSYD-MLKLCKDAQQDAHNDNIETCFVVG-DEEFLPLKESSLDLAISCLGLH  172 (191)
Q Consensus        99 GcG~G~~~~~l~~~~~~~~v~~vD~s~~-~l~~a~~~~~~~~~~~~~~~~~~~-d~~~l~~~~~~fDlVis~~~l~  172 (191)
                      |+|.+.++..|.+.+  .+|+|.|..+. +.+..++.       .  +.+..+ +.+.+    ...|+||.+.++.
T Consensus        11 G~GMs~LA~~L~~~G--~~VsGSD~~~~~~t~~L~~~-------G--i~i~~gh~~~~i----~~~d~vV~SsAI~   71 (89)
T d1j6ua1          11 GIGMSAVALHEFSNG--NDVYGSNIEETERTAYLRKL-------G--IPIFVPHSADNW----YDPDLVIKTPAVR   71 (89)
T ss_dssp             SHHHHHHHHHHHHTT--CEEEEECSSCCHHHHHHHHT-------T--CCEESSCCTTSC----CCCSEEEECTTCC
T ss_pred             HHHHHHHHHHHHhCC--CeEEEEeCCCChhHHHHHHC-------C--CeEEeeeccccc----CCCCEEEEecCcC
Confidence            344556677888888  89999998874 33332221       1  333333 34444    2479999988875

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.62  E-value=0.66  Score=33.73  Aligned_cols=77  Identities=16%  Similarity=0.145  Sum_probs=51.8

Q ss_pred             CCeE-EEEcCCccH---HHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------
Q 029554           92 FPTA-LCLGGSLEA---VRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------  156 (191)
Q Consensus        92 ~~~V-LDlGcG~G~---~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------  156 (191)
                      +.+| |=-|++.|.   ....|++. +  ..|+.++.+++-++.+.+.+..   ...++.++..|+....          
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g--~~Vi~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dvs~~~sv~~~~~~~~   76 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFS--GDVVLTARDVTRGQAAVQQLQA---EGLSPRFHQLDIDDLQSIRALRDFLR   76 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSS--SEEEEEESSHHHHHHHHHHHHH---TTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEEecCCHHHHHHHHHHHH
Confidence            4556 444655542   23445554 4  7999999999988888777654   3445788888877532          


Q ss_pred             CCCCCcceEEeCCcccC
Q 029554          157 LKESSLDLAISCLGLHW  173 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~~  173 (191)
                      -..+..|++|.|.++.+
T Consensus        77 ~~~g~iDiLVnNAGi~~   93 (275)
T d1wmaa1          77 KEYGGLDVLVNNAGIAF   93 (275)
T ss_dssp             HHHSSEEEEEECCCCCC
T ss_pred             HhcCCcEEEEEcCCcCC
Confidence            11267999999988754

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=86.04  E-value=0.68  Score=31.05  Aligned_cols=46  Identities=15%  Similarity=0.104  Sum_probs=34.5

Q ss_pred             ccCCCeEEEEcCCccHHH-HHHhhcCCCceEEEEECChhHHHHHHHh
Q 029554           89 RKTFPTALCLGGSLEAVR-RLLRGRGGIEKLIMMDTSYDMLKLCKDA  134 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G~~~-~~l~~~~~~~~v~~vD~s~~~l~~a~~~  134 (191)
                      .+++.+||=+|+|.+... ..+........|+++|.++.-++.+++-
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            457889999999885443 3344444457899999999988888764

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=85.81  E-value=1.1  Score=34.78  Aligned_cols=47  Identities=17%  Similarity=0.170  Sum_probs=36.8

Q ss_pred             CCCeEEEEcCCccHHHHHHhhc--CCCceEEEEECChhHHHHHHHhhhh
Q 029554           91 TFPTALCLGGSLEAVRRLLRGR--GGIEKLIMMDTSYDMLKLCKDAQQD  137 (191)
Q Consensus        91 ~~~~VLDlGcG~G~~~~~l~~~--~~~~~v~~vD~s~~~l~~a~~~~~~  137 (191)
                      +...++|+|+-.|..+..+...  ....+|+++|+++...+..+++...
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~  260 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  260 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            4458999999999887766543  2236899999999999998887653

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=85.56  E-value=1.5  Score=31.23  Aligned_cols=77  Identities=21%  Similarity=0.145  Sum_probs=53.2

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+..+|=.|++.|   .....|++.+  .+|+.++.+.+.++...+..      ..++.+++.|+....          -
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dls~~~~i~~~~~~i~~   75 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREG--ASLVAVDREERLLAEAVAAL------EAEAIAVVADVSDPKAVEAVFAEALE   75 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTC------CSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHc------CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            4567888888766   3455666767  89999999998776654433      345777888876422          0


Q ss_pred             CCCCcceEEeCCcccCcC
Q 029554          158 KESSLDLAISCLGLHWTN  175 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~  175 (191)
                      .-+..|++|.|.+..+..
T Consensus        76 ~~g~iDiLinnAg~~~~~   93 (241)
T d2a4ka1          76 EFGRLHGVAHFAGVAHSA   93 (241)
T ss_dssp             HHSCCCEEEEGGGGTTTT
T ss_pred             HhCCccEecccccccccc
Confidence            116799999988776654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=85.56  E-value=0.4  Score=30.78  Aligned_cols=62  Identities=11%  Similarity=0.123  Sum_probs=36.6

Q ss_pred             EEEEcCCccHHHHHHh----hcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----CCCCCcceEE
Q 029554           95 ALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKESSLDLAI  166 (191)
Q Consensus        95 VLDlGcG~G~~~~~l~----~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----~~~~~fDlVi  166 (191)
                      ++=+|+  |.++..++    +.+  .+|+.+|.+++.++.++...         ...+.+|.....    ..-...|.|+
T Consensus         3 ~iIiG~--G~~G~~la~~L~~~g--~~vvvid~d~~~~~~~~~~~---------~~~~~gd~~~~~~l~~a~i~~a~~vi   69 (134)
T d2hmva1           3 FAVIGL--GRFGGSIVKELHRMG--HEVLAVDINEEKVNAYASYA---------THAVIANATEENELLSLGIRNFEYVI   69 (134)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTT--CCCEEEESCHHHHHHTTTTC---------SEEEECCTTCTTHHHHHTGGGCSEEE
T ss_pred             EEEECC--CHHHHHHHHHHHHCC--CeEEEecCcHHHHHHHHHhC---------CcceeeecccchhhhccCCccccEEE
Confidence            334455  55555554    445  78999999999888774322         345567754322    1113567776


Q ss_pred             eCC
Q 029554          167 SCL  169 (191)
Q Consensus       167 s~~  169 (191)
                      +..
T Consensus        70 ~~~   72 (134)
T d2hmva1          70 VAI   72 (134)
T ss_dssp             ECC
T ss_pred             EEc
Confidence            643

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.12  E-value=0.59  Score=32.11  Aligned_cols=77  Identities=12%  Similarity=0.153  Sum_probs=49.4

Q ss_pred             ccCCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC---CCCCCCCc
Q 029554           89 RKTFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF---LPLKESSL  162 (191)
Q Consensus        89 ~~~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~---l~~~~~~f  162 (191)
                      .-.+.+||=.|++.|   .....|.+.+  .+|+.++.+++-++...+....    ...+.+...|...   ..-.-+..
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~i   93 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEG--AEVVLCGRKLDKAQAAADSVNK----RFKVNVTAAETADDASRAEAVKGA   93 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHH----HHTCCCEEEECCSHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhc--cchhhcccchHHHHHHHHHHHh----ccchhhhhhhcccHHHHHHHhcCc
Confidence            346788999997655   3455666777  8999999999888777666543    1123344444432   11112468


Q ss_pred             ceEEeCCcc
Q 029554          163 DLAISCLGL  171 (191)
Q Consensus       163 DlVis~~~l  171 (191)
                      |+||.+.+.
T Consensus        94 Dilin~Ag~  102 (191)
T d1luaa1          94 HFVFTAGAI  102 (191)
T ss_dssp             SEEEECCCT
T ss_pred             CeeeecCcc
Confidence            999988664

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.43  E-value=2  Score=28.34  Aligned_cols=45  Identities=13%  Similarity=-0.012  Sum_probs=33.2

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHh
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA  134 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~  134 (191)
                      .+++.+||=+|+|. |.....+++... .+|+++|.++.-++.+++.
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhcc
Confidence            56788999999874 444445555432 7999999999988888754

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.39  E-value=1.5  Score=31.17  Aligned_cols=74  Identities=20%  Similarity=0.155  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.+|.+++-++...+..        +..++..|+....          -
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G--~~V~~~~r~~~~l~~~~~~~--------~~~~~~~Dv~~~~~v~~~~~~~~~   73 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEG--ARLVACDIEEGPLREAAEAV--------GAHPVVMDVADPASVERGFAEALA   73 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTT--------TCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHc--------CCeEEEEecCCHHHHHHHHHHHHH
Confidence            4567888888776   3355666667  89999999998777765543        2456677765421          0


Q ss_pred             CCCCcceEEeCCcccCc
Q 029554          158 KESSLDLAISCLGLHWT  174 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~  174 (191)
                      .-+..|++|.|.+....
T Consensus        74 ~~g~iDilVnnAG~~~~   90 (242)
T d1ulsa_          74 HLGRLDGVVHYAGITRD   90 (242)
T ss_dssp             HHSSCCEEEECCCCCCC
T ss_pred             hcCCceEEEECCccccc
Confidence            11579999998876543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.26  E-value=1.8  Score=30.90  Aligned_cols=76  Identities=18%  Similarity=0.093  Sum_probs=53.2

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.+|.+++-++...+...      .+..++..|+....          -
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~~~   76 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEG--AKVVFGDILDEEGKAMAAELA------DAARYVHLDVTQPAQWKAAVDTAVT   76 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTG------GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhh------CcceEEEeecCCHHHHHHHHHHHHH
Confidence            4567888888777   4456667777  899999999987777665542      24677778865421          0


Q ss_pred             CCCCcceEEeCCcccCc
Q 029554          158 KESSLDLAISCLGLHWT  174 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~  174 (191)
                      .-+..|++|.|.+..+.
T Consensus        77 ~~g~idilinnAG~~~~   93 (244)
T d1nffa_          77 AFGGLHVLVNNAGILNI   93 (244)
T ss_dssp             HHSCCCEEEECCCCCCC
T ss_pred             HhCCCeEEEECCcccCC
Confidence            12579999999877654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=84.14  E-value=1.4  Score=31.55  Aligned_cols=77  Identities=16%  Similarity=0.126  Sum_probs=53.3

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.+|.+++-++...+..      ..++..+..|+....          -
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~------~~~~~~~~~Dvt~~~~v~~~~~~~~~   75 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREG--ARVAIADINLEAARATAAEI------GPAACAIALDVTDQASIDRCVAELLD   75 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTT--EEEEEEESCHHHHHHHHHHH------CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHh------CCceEEEEeeCCCHHHHHHHHHHHHH
Confidence            3567888888776   4455667777  89999999988777665544      234677778876422          0


Q ss_pred             CCCCcceEEeCCcccCcC
Q 029554          158 KESSLDLAISCLGLHWTN  175 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~  175 (191)
                      .-+..|++|.|.+..+..
T Consensus        76 ~~g~iDilVnnAg~~~~~   93 (256)
T d1k2wa_          76 RWGSIDILVNNAALFDLA   93 (256)
T ss_dssp             HHSCCCEEEECCCCCCCC
T ss_pred             HhCCccEEEeeccccccc
Confidence            115799999998876543

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=84.10  E-value=0.81  Score=33.01  Aligned_cols=79  Identities=10%  Similarity=0.159  Sum_probs=51.4

Q ss_pred             CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECC-hhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTS-YDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s-~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      +..+|=.|++.|   .....|++.+  .+|+.+|.+ +..++...+....  ....++.++..|+....          -
T Consensus         4 gK~alITGas~GIG~aiA~~la~~G--a~V~~~~r~~~~~~~~~~~~~~~--~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (260)
T d1x1ta1           4 GKVAVVTGSTSGIGLGIATALAAQG--ADIVLNGFGDAAEIEKVRAGLAA--QHGVKVLYDGADLSKGEAVRGLVDNAVR   79 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTT--CEEEEECCSCHHHHHHHHHHHHH--HHTSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEeCCcHHHHHHHHHHHHH--hcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            456777777766   3455667777  899999987 4556655554432  12345777888876432          0


Q ss_pred             CCCCcceEEeCCcccCc
Q 029554          158 KESSLDLAISCLGLHWT  174 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~  174 (191)
                      .-+..|++|.|.+..+.
T Consensus        80 ~~G~iDiLVnnAG~~~~   96 (260)
T d1x1ta1          80 QMGRIDILVNNAGIQHT   96 (260)
T ss_dssp             HHSCCSEEEECCCCCCC
T ss_pred             HhCCCcEEEeecccccC
Confidence            11679999999877654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=83.91  E-value=2.2  Score=30.25  Aligned_cols=77  Identities=21%  Similarity=0.124  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.+|.+++-++...+...      .+...+..|+....          -
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G--~~Vv~~~r~~~~l~~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~~~   74 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARG--AKVIGTATSENGAQAISDYLG------ANGKGLMLNVTDPASIESVLEKIRA   74 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHG------GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhC------CCCcEEEEEecCHHHhhhhhhhhhc
Confidence            3556777787666   3455666767  899999999988877766542      23566777765321          1


Q ss_pred             CCCCcceEEeCCcccCcC
Q 029554          158 KESSLDLAISCLGLHWTN  175 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~  175 (191)
                      .-+..|++|.|.+..+..
T Consensus        75 ~~g~iDilVnnAg~~~~~   92 (243)
T d1q7ba_          75 EFGEVDILVNNAGITRDN   92 (243)
T ss_dssp             HTCSCSEEEECCCCCCCC
T ss_pred             ccCCcceehhhhhhcccc
Confidence            126799999988766553

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=83.64  E-value=0.28  Score=35.77  Aligned_cols=52  Identities=10%  Similarity=0.032  Sum_probs=32.2

Q ss_pred             eEEEEECChhHHHHHHH---hhhhccCCCCceeeEecCCCCCC-----CCCCCcceEEeCC
Q 029554          117 KLIMMDTSYDMLKLCKD---AQQDAHNDNIETCFVVGDEEFLP-----LKESSLDLAISCL  169 (191)
Q Consensus       117 ~v~~vD~s~~~l~~a~~---~~~~~~~~~~~~~~~~~d~~~l~-----~~~~~fDlVis~~  169 (191)
                      .++|.|+++.+++.+++   ++.. ......+.+.+.|+....     .++...++||+|-
T Consensus       116 ~i~G~D~d~~ai~~A~~~r~n~~~-Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNP  175 (249)
T d1o9ga_         116 ERFGKPSYLEAAQAARRLRERLTA-EGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDL  175 (249)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHH-TTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEEC
T ss_pred             CccccccCHHHHHHHHHHHHHHHH-cCCCceeeeeecchhccCcchhccCCCCCCEEEeCC
Confidence            46788888888887742   3322 123455777888864321     1235679999984

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.56  E-value=2.4  Score=31.12  Aligned_cols=82  Identities=13%  Similarity=0.118  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc--CCCCceeeEecCCCCCC---------
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEEFLP---------  156 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~d~~~l~---------  156 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.+|.+++-++.+.+.+....  ....++..+..|+....         
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~G--a~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELG--SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            4667888887776   3345666667  899999999988777766554211  12346777888876432         


Q ss_pred             -CCCCCcceEEeCCcccCc
Q 029554          157 -LKESSLDLAISCLGLHWT  174 (191)
Q Consensus       157 -~~~~~fDlVis~~~l~~~  174 (191)
                       -.-+..|++|.|.+..+.
T Consensus        89 ~~~~G~iDiLVnnAg~~~~  107 (297)
T d1yxma1          89 LDTFGKINFLVNNGGGQFL  107 (297)
T ss_dssp             HHHHSCCCEEEECCCCCCC
T ss_pred             HHHhCCeEEEEeecccccc
Confidence             012579999998876554

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=83.43  E-value=1.4  Score=31.88  Aligned_cols=79  Identities=18%  Similarity=0.090  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECCh-hHHHHHHHhhhhccCCCCceeeEecCCCCCC----------
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSY-DMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------  156 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~-~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------  156 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.++.+. ..++...+....   ...++..+..|+....          
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G--~~Vv~~~r~~~~~~~~~~~~~~~---~g~~~~~~~~Dvt~~~~v~~~~~~~~   80 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEK--AKVVVNYRSKEDEANSVLEEIKK---VGGEAIAVKGDVTVESDVINLVQSAI   80 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHH---TTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCcHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            4567787787766   3455666767  8999999875 455555555443   3345777888876421          


Q ss_pred             CCCCCcceEEeCCcccCc
Q 029554          157 LKESSLDLAISCLGLHWT  174 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~~~  174 (191)
                      -.-+..|++|.|.+..+.
T Consensus        81 ~~~G~iDiLVnnAG~~~~   98 (261)
T d1geea_          81 KEFGKLDVMINNAGLENP   98 (261)
T ss_dssp             HHHSCCCEEEECCCCCCC
T ss_pred             HHhCCCCEeeccceecCC
Confidence            012579999999877654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=83.23  E-value=2.1  Score=30.69  Aligned_cols=76  Identities=13%  Similarity=0.062  Sum_probs=53.0

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+.++|=.|++.|   .....|++.+  .+|+.+|.+++-++...+..      ..++.++..|+....          -
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~~~   75 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAG--ARVVLADVLDEEGAATAREL------GDAARYQHLDVTIEEDWQRVVAYARE   75 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTT------GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHh------CCceEEEEcccCCHHHHHHHHHHHHH
Confidence            4567888888777   4466667777  89999999998766654433      234778888876421          0


Q ss_pred             CCCCcceEEeCCcccCc
Q 029554          158 KESSLDLAISCLGLHWT  174 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~  174 (191)
                      .-+..|++|.|.+..+.
T Consensus        76 ~~g~iDilVnnAg~~~~   92 (254)
T d1hdca_          76 EFGSVDGLVNNAGISTG   92 (254)
T ss_dssp             HHSCCCEEEECCCCCCC
T ss_pred             HcCCccEEEecCccccc
Confidence            12579999998877654

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=82.90  E-value=1.7  Score=30.93  Aligned_cols=77  Identities=12%  Similarity=0.039  Sum_probs=50.3

Q ss_pred             EEEEcCCcc---HHHHHHhhcCC-----CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------
Q 029554           95 ALCLGGSLE---AVRRLLRGRGG-----IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------  156 (191)
Q Consensus        95 VLDlGcG~G---~~~~~l~~~~~-----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------  156 (191)
                      ||=-|++.|   .....|++.+-     ...++.++.+++-++...+....   ...++.++..|+....          
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~---~g~~~~~~~~Dvt~~~~v~~~~~~~~   80 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA---EGALTDTITADISDMADVRRLTTHIV   80 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT---TTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHHH
Confidence            566677666   23445555551     12389999999888887766643   3456777888876432          


Q ss_pred             CCCCCcceEEeCCcccCc
Q 029554          157 LKESSLDLAISCLGLHWT  174 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~~~  174 (191)
                      -.-+..|++|.|.+....
T Consensus        81 ~~~g~iDilvnnAg~~~~   98 (240)
T d2bd0a1          81 ERYGHIDCLVNNAGVGRF   98 (240)
T ss_dssp             HHTSCCSEEEECCCCCCC
T ss_pred             HHcCCcceeecccccccC
Confidence            112679999998877654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=82.89  E-value=1.2  Score=28.23  Aligned_cols=60  Identities=10%  Similarity=-0.011  Sum_probs=41.2

Q ss_pred             CCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----CCCCCcceEEeC
Q 029554          100 GSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKESSLDLAISC  168 (191)
Q Consensus       100 cG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----~~~~~fDlVis~  168 (191)
                      ||.|..+..+.+......++.+|.++...+..+..         .+.++.+|.....    ..-...+.|++.
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~---------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~   69 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS---------GANFVHGDPTRVSDLEKANVRGARAVIVN   69 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT---------TCEEEESCTTSHHHHHHTTCTTCSEEEEC
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc---------CccccccccCCHHHHHHhhhhcCcEEEEe
Confidence            56688888888776567899999999988766433         2677888865311    222457777764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=82.81  E-value=1.4  Score=29.32  Aligned_cols=45  Identities=11%  Similarity=-0.124  Sum_probs=32.5

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHh
Q 029554           89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA  134 (191)
Q Consensus        89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~  134 (191)
                      ..++.+||=+|||. |.+...+++.. ..+++++|.++.-++.+++.
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~l   73 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKAL   73 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhcc
Confidence            45788999999864 45555555543 26788999999888877654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=82.07  E-value=2.7  Score=27.84  Aligned_cols=91  Identities=12%  Similarity=0.122  Sum_probs=51.5

Q ss_pred             CeEEEEcCCcc--HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc-CCCCc----eeeEecCCCCCCCCCCCcceE
Q 029554           93 PTALCLGGSLE--AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH-NDNIE----TCFVVGDEEFLPLKESSLDLA  165 (191)
Q Consensus        93 ~~VLDlGcG~G--~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-~~~~~----~~~~~~d~~~l~~~~~~fDlV  165 (191)
                      .+|-=+|+|.-  .++..|.+.+  .+|+++|.++.-++..++...... .....    ......|..+   .-..+|+|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---~~~~aD~i   76 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKG--QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL---AVKDADVI   76 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH---HHTTCSEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHh---HhcCCCEE
Confidence            35667888754  3355666666  799999999988877765431100 00000    0111111111   01357999


Q ss_pred             EeCCcccCcCChHHHHHHHHhccCCC
Q 029554          166 ISCLGLHWTNDLPGAMIQVSIFLLPD  191 (191)
Q Consensus       166 is~~~l~~~~d~~~~l~~i~r~Lkpg  191 (191)
                      +..--   ......++.++...|+++
T Consensus        77 ii~v~---~~~~~~~~~~i~~~l~~~   99 (184)
T d1bg6a2          77 LIVVP---AIHHASIAANIASYISEG   99 (184)
T ss_dssp             EECSC---GGGHHHHHHHHGGGCCTT
T ss_pred             EEEEc---hhHHHHHHHHhhhccCCC
Confidence            87532   224577888888888764

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=82.05  E-value=2.1  Score=28.76  Aligned_cols=87  Identities=15%  Similarity=-0.004  Sum_probs=51.7

Q ss_pred             ccCCCeEEEEcCCc--cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-----CCCCCC
Q 029554           89 RKTFPTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-----PLKESS  161 (191)
Q Consensus        89 ~~~~~~VLDlGcG~--G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-----~~~~~~  161 (191)
                      .+++.+||=.|++.  |.....+++.. .++|++++.+++-++.+++....       ..+...+....     ......
T Consensus        27 v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~Ga~-------~vi~~~~~~~~~~~~~~~~~~G   98 (182)
T d1v3va2          27 VKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGFD-------AAFNYKTVNSLEEALKKASPDG   98 (182)
T ss_dssp             CCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCS-------EEEETTSCSCHHHHHHHHCTTC
T ss_pred             CCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhhhhh-------hhcccccccHHHHHHHHhhcCC
Confidence            35788999888754  45566666654 37999999999888777654311       11111221110     013356


Q ss_pred             cceEEeCCcccCcCChHHHHHHHHhccCC
Q 029554          162 LDLAISCLGLHWTNDLPGAMIQVSIFLLP  190 (191)
Q Consensus       162 fDlVis~~~l~~~~d~~~~l~~i~r~Lkp  190 (191)
                      +|+|+-+-+       ...+.+..++|+|
T Consensus        99 vd~v~D~vG-------~~~~~~~~~~l~~  120 (182)
T d1v3va2          99 YDCYFDNVG-------GEFLNTVLSQMKD  120 (182)
T ss_dssp             EEEEEESSC-------HHHHHHHGGGEEE
T ss_pred             CceeEEecC-------chhhhhhhhhccC
Confidence            999886543       3456666666665

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=81.25  E-value=2.5  Score=28.06  Aligned_cols=44  Identities=14%  Similarity=-0.139  Sum_probs=32.8

Q ss_pred             cCCCeEEEEcCCc--cHHHHHHhhcCCCceEEEEECChhHHHHHHHh
Q 029554           90 KTFPTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA  134 (191)
Q Consensus        90 ~~~~~VLDlGcG~--G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~  134 (191)
                      +++.+||=.|+|.  |.....+++.. ..+|++++.|+.-++.+++.
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~l   72 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKA   72 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH
T ss_pred             CCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhc
Confidence            5778999986654  55666665543 27999999999988888764

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=80.42  E-value=2  Score=30.59  Aligned_cols=78  Identities=14%  Similarity=0.015  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L  157 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~  157 (191)
                      .+..+|=.|++.|   .....|++.+  .+|+.+|.++.-  .+.+..+.   ...++..+..|+....          -
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~G--a~V~~~~~~~~~--~~~~~~~~---~g~~~~~~~~Dvs~~~~v~~~~~~~~~   76 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEG--ADIAIADLVPAP--EAEAAIRN---LGRRVLTVKCDVSQPGDVEAFGKQVIS   76 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCCH--HHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCchH--HHHHHHHH---cCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            4567787887666   4455666767  899999987642  22222222   3345778888876422          0


Q ss_pred             CCCCcceEEeCCcccCcC
Q 029554          158 KESSLDLAISCLGLHWTN  175 (191)
Q Consensus       158 ~~~~fDlVis~~~l~~~~  175 (191)
                      .-+..|++|.|.++.+..
T Consensus        77 ~~G~iDilVnnAG~~~~~   94 (247)
T d2ew8a1          77 TFGRCDILVNNAGIYPLI   94 (247)
T ss_dssp             HHSCCCEEEECCCCCCCC
T ss_pred             HcCCCCEEEECCCCCCCC
Confidence            126799999998876543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=80.39  E-value=1.9  Score=30.84  Aligned_cols=81  Identities=16%  Similarity=0.098  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEE-ECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------
Q 029554           91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMM-DTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------  156 (191)
Q Consensus        91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~v-D~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------  156 (191)
                      .+.+||=.|++.|   ..+..|++.+  .+|+.+ +-++..++...+....   ...++.++..|+....          
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G--~~Vvi~~~~~~~~~~~~~~~~~~---~g~~~~~~~~D~~~~~~v~~~~~~~~   79 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRG--ASVVVNYGSSSKAAEEVVAELKK---LGAQGVAIQADISKPSEVVALFDKAV   79 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEcCCChHHHHHHHHHHHH---cCCCceEecCCCCCHHHHHHHHHHHH
Confidence            4667887787666   5566667777  788875 4566667776666654   3345778888876421          


Q ss_pred             CCCCCcceEEeCCcccCcCC
Q 029554          157 LKESSLDLAISCLGLHWTND  176 (191)
Q Consensus       157 ~~~~~fDlVis~~~l~~~~d  176 (191)
                      ..-+..|++|.|.+..+..+
T Consensus        80 ~~~g~idilinnag~~~~~~   99 (259)
T d1ja9a_          80 SHFGGLDFVMSNSGMEVWCD   99 (259)
T ss_dssp             HHHSCEEEEECCCCCCCCCC
T ss_pred             HHcCCCcEEEeccccccccc
Confidence            12257999999988776543