Citrus Sinensis ID: 029556

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MASHFVYSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDHGNQLIRQINLKPEDCSKSSQSGSGMFWVTVFSPYLISCKSFWVHLYLYFCSFKGSI
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHEEcccccEEEEcccEEEEEEEcccccccccEEEEEcccccEEEEEccccEEEEEEcccccccEEEEEEcccccccccccccccccccccEEEEcccccEEEEEccccEEEEEEccccccEEEEEEEEcccccccccccccccEEEEEEcEEEEEEcccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHccEEEcccEEEEEEEcccccccccccEEEEcccccEEEEEccccEEEEEEcccccccEEEEEEcccccccccccccHcEcccccEEEEcccccEEEEEccccEEEEEccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEccc
Coil and Loop (DISEMBL)
MASHFVYSSLAITLLSLLFSLVSsgllledgytvttvidghqleinphsvidrpgssdlivldssrsafytlsfplseESVVKRLagdgvqgysdgepgsarfdkpksfavdmkgniyvadksnHVIRKITNLDHGNQLIRqinlkpedcskssqsgsgmFWVTVFSPYLISCKSFWVHLYLYFCSFKGSI
Flexible Loop (DISEMBL)
MASHFVYSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQleinphsvidrpGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVqgysdgepgsarfdKPKSFAVDMKGNIYVADKSNHVIRKITNLDHGNQLIRQINLKPEDCSKSSQSGSGMFWVTVFSPYLISCKSFWVHLYLYFCSFKGSI
Low Complexity Region (SEG)
MASHFVYsslaitllsllfslvssglllEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDHGNQLIRQINLKPEDCSKSSQSGSGMFWVTVFSPYLISCKSFWVHLYLYFCSFKGSI
Disordered region (IsUnstruct)
***HFVYSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRL***********************FAVDMKGNIYVADKSNHVIRKITNLDHGNQLIRQINL*************GMFWVTVFSPYLISCKSFWVHLYLYFCSF****
Disordered Region (DISOPRED)
**SHFVYSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDHGNQLIRQINLKPEDCSKSSQSGSGMFWVTVFSPYLISCKSFWVHLYLYFCSFKGSI
Disordered Region (DISEMBL)
MASHFVYSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDHGNQLIRQINLKP*********GSGMFWVTVFSPYLISCKSFWVHLYLYFCSFKGSI
Disordered Region (DISPRO)
*ASHFVYSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDHGNQLIRQINLKPEDCSKSSQSGSGMFWVTVFSPYLISCKSFWVHLYLYFCSFKGSI
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASHFVYSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDHGNQLIRQINLKPEDCSKSSQSGSGMFWVTVFSPYLISCKSFWVHLYLYFCSFKGSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
255560013	408	conserved hypothetical protein [Ricinus	0.785	0.367	0.543	7e-49
224079468	241	predicted protein [Populus trichocarpa]	0.706	0.560	0.519	8e-42
297850862	398	NHL repeat-containing protein [Arabidops	0.806	0.386	0.452	1e-39
225424715	438	PREDICTED: uncharacterized protein LOC10	0.837	0.365	0.455	2e-39
296086532	369	unnamed protein product [Vitis vinifera]	0.837	0.433	0.455	2e-39
224065156	264	predicted protein [Populus trichocarpa]	0.712	0.515	0.489	8e-39
18395326	261	NHL domain-containing protein [Arabidops	0.806	0.590	0.452	9e-39
42571623	400	NHL domain-containing protein [Arabidops	0.806	0.385	0.452	1e-38
9369410	370	T23E23.6 [Arabidopsis thaliana]	0.780	0.402	0.458	3e-38
147798774	459	hypothetical protein VITISV_022545 [Viti	0.837	0.348	0.446	5e-38

>gi|255560013|ref|XP_002521025.1| conserved hypothetical protein [Ricinus communis] gi|223539862|gb|EEF41442.1| conserved hypothetical protein [Ricinus communis]

 Score =  198 bits (504), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 106/195 (54%), Positives = 126/195 (64%), Gaps = 45/195 (23%)

Query: 14  LLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLS 73
           LL L  + V  GL+LEDGYTVTT+IDGH+LEINPH+V+ RP SSDLI+LDSS S  YT+S
Sbjct: 18  LLHLPSNYVLGGLILEDGYTVTTIIDGHKLEINPHAVLSRPQSSDLILLDSSHSTIYTIS 77

Query: 74  FPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITN- 132
           FP+S+ESVVKRL+GDGV G SDGEPGSARF+KP+SFAVD KGNIYVAD+ N  IRKITN 
Sbjct: 78  FPISQESVVKRLSGDGVAGLSDGEPGSARFNKPRSFAVDNKGNIYVADRLNGTIRKITNS 137

Query: 133 ------------------------------------------LDHGNQLIRQINLKPEDC 150
                                                      DHGNQL+R++ LKP+DC
Sbjct: 138 GVSTIAGGYSKGFGREDGPAQNATFSSDFEVAFVAEECALLISDHGNQLVRRLPLKPDDC 197

Query: 151 SKSSQSGSGM--FWV 163
           + +S S  G   FWV
Sbjct: 198 ATASHSALGAVSFWV 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079468|ref|XP_002305875.1| predicted protein [Populus trichocarpa] gi|222848839|gb|EEE86386.1| predicted protein [Populus trichocarpa]

 Score =  175 bits (443), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 95/183 (51%), Positives = 115/183 (62%), Gaps = 48/183 (26%)

Query: 27  LLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRL 85
           +LEDGY VTTV+DGH+L INPH+V  R  SS+++VLDSSRS FYTL FP+S+ SV VKRL
Sbjct: 1   MLEDGYMVTTVLDGHKLNINPHAVQLR--SSEIVVLDSSRSVFYTLPFPISQASVMVKRL 58

Query: 86  AGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITN------------- 132
           +G+G  GY DGEPG ARF+KPKSFAVD++GN+YVAD+ NH +RKI+N             
Sbjct: 59  SGEGKTGYIDGEPGLARFNKPKSFAVDLRGNVYVADQQNHAVRKISNSGVTSTIVGNYSQ 118

Query: 133 ------------------------------LDHGNQLIRQINLKPEDCSKSSQSGSGM-- 160
                                          DHGNQL+RQI+LKPEDC   SQS  G   
Sbjct: 119 TGRQDGPGKTATFSSDFEVLFVPQICALLISDHGNQLLRQIDLKPEDCVIGSQSALGAVK 178

Query: 161 FWV 163
           FWV
Sbjct: 179 FWV 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850862|ref|XP_002893312.1| NHL repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297339154|gb|EFH69571.1| NHL repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/199 (45%), Positives = 122/199 (61%), Gaps = 45/199 (22%)

Query: 7   YSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSR 66
           +SS+++ L  ++F+LVS  ++LEDGY VTTV+DGH+  +NP+++   PGSS+LIVLDSS 
Sbjct: 5   FSSVSLFLF-VVFNLVSGKIVLEDGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSG 63

Query: 67  SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV 126
           S FYT SFPLS +SV+ R AGDG  GY DG+ G++RF KP+ FA+D KGN+YVAD+SN  
Sbjct: 64  STFYTTSFPLSFDSVIHRFAGDGTSGYVDGKAGNSRFKKPRGFAIDAKGNVYVADRSNKA 123

Query: 127 IRKITN--------------------------------------------LDHGNQLIRQ 142
           IRKI++                                             DHGN+++RQ
Sbjct: 124 IRKISSSGYVTTIAGGISKEFGHRDGPAQNATFSSDFEITFVPQRCCLLVSDHGNEMVRQ 183

Query: 143 INLKPEDCSKSSQSGSGMF 161
           INLK EDC +SS S  G +
Sbjct: 184 INLKEEDCLESSHSNLGAY 202

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424715|ref|XP_002265272.1| PREDICTED: uncharacterized protein LOC100243227 [Vitis vinifera]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 128/213 (60%), Gaps = 53/213 (24%)

Query: 1   MASHFVYSSLAITLLSLLFSLV----SSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGS 56
           MA++    SL++ ++  +F++     S+ L+LEDGYTV TV DG++LEINPHS++ R GS
Sbjct: 1   MATYL--QSLSLFIVFTIFTIAAIHGSADLVLEDGYTVRTVFDGNKLEINPHSILPRYGS 58

Query: 57  SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN 116
           SD I+LDSS+S FYT+S PLS+ES +KRL+G    G+SDG+  SA F KP+SFAVD+KGN
Sbjct: 59  SDFIILDSSKSVFYTVSSPLSQESEIKRLSGSSA-GFSDGDSASATFSKPRSFAVDLKGN 117

Query: 117 IYVADKSNHVIRKITNL------------------------------------------- 133
           +YVAD+SN VIRKITN                                            
Sbjct: 118 VYVADQSNGVIRKITNRGVTTTIAGGYAQKTGKVDGPAQNASFSKDFELVFVPEKCAVLV 177

Query: 134 -DHGNQLIRQINLKPEDCSKSSQS--GSGMFWV 163
            D G+QL+RQI+LK EDC +S QS  G    WV
Sbjct: 178 SDRGSQLVRQIDLKVEDCRRSPQSVLGGAFLWV 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086532|emb|CBI32121.3| unnamed protein product [Vitis vinifera]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 128/213 (60%), Gaps = 53/213 (24%)

Query: 1   MASHFVYSSLAITLLSLLFSLV----SSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGS 56
           MA++    SL++ ++  +F++     S+ L+LEDGYTV TV DG++LEINPHS++ R GS
Sbjct: 1   MATYL--QSLSLFIVFTIFTIAAIHGSADLVLEDGYTVRTVFDGNKLEINPHSILPRYGS 58

Query: 57  SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN 116
           SD I+LDSS+S FYT+S PLS+ES +KRL+G    G+SDG+  SA F KP+SFAVD+KGN
Sbjct: 59  SDFIILDSSKSVFYTVSSPLSQESEIKRLSGSSA-GFSDGDSASATFSKPRSFAVDLKGN 117

Query: 117 IYVADKSNHVIRKITNL------------------------------------------- 133
           +YVAD+SN VIRKITN                                            
Sbjct: 118 VYVADQSNGVIRKITNRGVTTTIAGGYAQKTGKVDGPAQNASFSKDFELVFVPEKCAVLV 177

Query: 134 -DHGNQLIRQINLKPEDCSKSSQS--GSGMFWV 163
            D G+QL+RQI+LK EDC +S QS  G    WV
Sbjct: 178 SDRGSQLVRQIDLKVEDCRRSPQSVLGGAFLWV 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065156|ref|XP_002301692.1| predicted protein [Populus trichocarpa] gi|222843418|gb|EEE80965.1| predicted protein [Populus trichocarpa]

 Score =  165 bits (418), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 90/184 (48%), Positives = 114/184 (61%), Gaps = 48/184 (26%)

Query: 26  LLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKR 84
           ++LEDGY VTTV+DGH+L +NPH+V  R  SSDL+VLDSS+S FYTL FP+S++ V VKR
Sbjct: 23  IMLEDGYMVTTVMDGHKLNVNPHAVQLR--SSDLVVLDSSKSVFYTLPFPISQDGVMVKR 80

Query: 85  LAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITN------------ 132
           L+G G +GY DGEPG ARF+KPKSF VD++GN+YVAD+ NH +RKI++            
Sbjct: 81  LSGSGDKGYIDGEPGLARFNKPKSFTVDLRGNVYVADQLNHAVRKISSSGMTTTIAGNYS 140

Query: 133 -------------------------------LDHGNQLIRQINLKPEDCSKSSQSGSGM- 160
                                           DHGNQL+RQ++LK EDC   SQS  G  
Sbjct: 141 QIGRQDGPGETATFSTDFEVLFVPQICALLISDHGNQLLRQVDLKQEDCIIGSQSALGAV 200

Query: 161 -FWV 163
            FWV
Sbjct: 201 KFWV 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395326|ref|NP_564209.1| NHL domain-containing protein [Arabidopsis thaliana] gi|15724248|gb|AAL06517.1|AF412064_1 At1g23890/T23E23_13 [Arabidopsis thaliana] gi|16974539|gb|AAL31179.1| At1g23890/T23E23_13 [Arabidopsis thaliana] gi|110742589|dbj|BAE99208.1| hypothetical protein [Arabidopsis thaliana] gi|332192326|gb|AEE30447.1| NHL domain-containing protein [Arabidopsis thaliana]

 Score =  165 bits (417), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 90/199 (45%), Positives = 122/199 (61%), Gaps = 45/199 (22%)

Query: 7   YSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSR 66
           +SS+++ L  ++F+LVS  ++LE+GY VTTV+DGH+  +NP+++   PGSS+LIVLDSS 
Sbjct: 5   FSSVSLFLF-VVFNLVSGKIVLEEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSG 63

Query: 67  SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV 126
           S FYT SFPLS +SV+ R AGDG  G+ DG+ G++RF KP+ FAVD KGN+YVADKSN  
Sbjct: 64  STFYTTSFPLSVDSVINRFAGDGSSGHVDGKAGNSRFSKPRGFAVDAKGNVYVADKSNKA 123

Query: 127 IRKITN--------------------------------------------LDHGNQLIRQ 142
           IRKI++                                             DHGN++IRQ
Sbjct: 124 IRKISSSGSVTTIAGGISKAFGHRDGPAQNATFSSDFEITFVPQRCCLLVSDHGNEMIRQ 183

Query: 143 INLKPEDCSKSSQSGSGMF 161
           INLK EDC ++S S  G +
Sbjct: 184 INLKEEDCLENSHSNLGTY 202

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42571623|ref|NP_973902.1| NHL domain-containing protein [Arabidopsis thaliana] gi|332192325|gb|AEE30446.1| NHL domain-containing protein [Arabidopsis thaliana]

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/199 (45%), Positives = 122/199 (61%), Gaps = 45/199 (22%)

Query: 7   YSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSR 66
           +SS+++ L  ++F+LVS  ++LE+GY VTTV+DGH+  +NP+++   PGSS+LIVLDSS 
Sbjct: 5   FSSVSLFLF-VVFNLVSGKIVLEEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSG 63

Query: 67  SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV 126
           S FYT SFPLS +SV+ R AGDG  G+ DG+ G++RF KP+ FAVD KGN+YVADKSN  
Sbjct: 64  STFYTTSFPLSVDSVINRFAGDGSSGHVDGKAGNSRFSKPRGFAVDAKGNVYVADKSNKA 123

Query: 127 IRKITN--------------------------------------------LDHGNQLIRQ 142
           IRKI++                                             DHGN++IRQ
Sbjct: 124 IRKISSSGSVTTIAGGISKAFGHRDGPAQNATFSSDFEITFVPQRCCLLVSDHGNEMIRQ 183

Query: 143 INLKPEDCSKSSQSGSGMF 161
           INLK EDC ++S S  G +
Sbjct: 184 INLKEEDCLENSHSNLGTY 202

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9369410|gb|AAF87158.1|AC002423_23 T23E23.6 [Arabidopsis thaliana]

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 120/194 (61%), Gaps = 45/194 (23%)

Query: 7   YSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSR 66
           +SS+++ L  ++F+LVS  ++LE+GY VTTV+DGH+  +NP+++   PGSS+LIVLDSS 
Sbjct: 5   FSSVSLFLF-VVFNLVSGKIVLEEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSG 63

Query: 67  SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV 126
           S FYT SFPLS +SV+ R AGDG  G+ DG+ G++RF KP+ FAVD KGN+YVADKSN  
Sbjct: 64  STFYTTSFPLSVDSVINRFAGDGSSGHVDGKAGNSRFSKPRGFAVDAKGNVYVADKSNKA 123

Query: 127 IRKITN--------------------------------------------LDHGNQLIRQ 142
           IRKI++                                             DHGN++IRQ
Sbjct: 124 IRKISSSGSVTTIAGGISKAFGHRDGPAQNATFSSDFEITFVPQRCCLLVSDHGNEMIRQ 183

Query: 143 INLKPEDCSKSSQS 156
           INLK EDC ++S S
Sbjct: 184 INLKEEDCLENSHS 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798774|emb|CAN69795.1| hypothetical protein VITISV_022545 [Vitis vinifera]

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 95/213 (44%), Positives = 126/213 (59%), Gaps = 53/213 (24%)

Query: 1   MASHFVYSSLAITLLSLLFSLV----SSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGS 56
           MA++    SL++ ++  +F++     S+ L+LEDGYTV TV DG++LEINPHS++ R GS
Sbjct: 1   MATYL--QSLSLFIVFTIFTIAAIHGSADLVLEDGYTVRTVFDGNKLEINPHSILPRYGS 58

Query: 57  SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN 116
           SD I+LDSS+S FYT+  PLS+ES + RL+G    G+SDG+  SA F KP+SFAVD+KGN
Sbjct: 59  SDFIILDSSKSVFYTVXSPLSQESEINRLSGSSA-GFSDGDSASAMFSKPRSFAVDLKGN 117

Query: 117 IYVADKSNHVIRKITNL------------------------------------------- 133
           +YVAD+SN VIRKITN                                            
Sbjct: 118 VYVADQSNGVIRKITNRGVTTTIAGGYAQKTGKVDGPAQNASFSKDFELVFVPEKCAVLV 177

Query: 134 -DHGNQLIRQINLKPEDCSKSSQS--GSGMFWV 163
            D G+QL+RQI+LK EDC +S QS  G    WV
Sbjct: 178 SDRGSQLVRQIDLKVEDCRRSPQSVLGGAFLWV 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
TAIR|locus:2199872	400	AT1G23890 "AT1G23890" [Arabido	0.544	0.26	0.625	3.6e-40
TAIR|locus:2147780	754	AT5G14890 [Arabidopsis thalian	0.544	0.137	0.433	1.3e-16
TAIR|locus:2199862	545	AT1G23880 "AT1G23880" [Arabido	0.534	0.187	0.438	5e-15
TAIR|locus:2016189	509	AT1G70280 "AT1G70280" [Arabido	0.534	0.200	0.428	7.1e-15
TAIR|locus:2099357	493	AT3G14860 "AT3G14860" [Arabido	0.523	0.202	0.380	4.6e-13

TAIR|locus:2199872 AT1G23890 "AT1G23890" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
 Identities = 65/104 (62%), Positives = 83/104 (79%)

Query:    29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGD 88
             E+GY VTTV+DGH+  +NP+++   PGSS+LIVLDSS S FYT SFPLS +SV+ R AGD
Sbjct:    26 EEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSGSTFYTTSFPLSVDSVINRFAGD 85

Query:    89 GVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITN 132
             G  G+ DG+ G++RF KP+ FAVD KGN+YVADKSN  IRKI++
Sbjct:    86 GSSGHVDGKAGNSRFSKPRGFAVDAKGNVYVADKSNKAIRKISS 129

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2147780 AT5G14890 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 46/106 (43%), Positives = 65/106 (61%)

Query:    29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAG- 87
             E GY + TV DG +L I P+++   P   +LIVLDS  S  + +S PLS     K L+G 
Sbjct:    75 ESGYNMETVFDGSKLGIEPYAIEVSPNGGELIVLDSENSNIHKISMPLSRYGKPKLLSGS 134

Query:    88 -DGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITN 132
              +G  G+ DG+   AR ++P+  A+D +GNIYVAD  N  IRKI++
Sbjct:   135 QEGYTGHVDGKLKEARMNRPRGLAMDDRGNIYVADTINMAIRKISD 180

GO:0005576 "extracellular region" evidence=ISM

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2199862 AT1G23880 "AT1G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 5.0e-15, P = 5.0e-15
 Identities = 46/105 (43%), Positives = 64/105 (60%)

Query:    29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAG- 87
             E+GY+V TV+DG +L I P+S I    + +L++LDS  S  Y +S  LS  S  + + G 
Sbjct:   129 ENGYSVETVLDGSKLGIEPYS-IQVLSNGELLILDSQNSNIYQISSSLSLYSRPRLVTGS 187

Query:    88 -DGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
              +G  G+ DG    AR + PK   VD +GNIYVAD  N+ IRKI+
Sbjct:   188 PEGYPGHVDGRLRDARLNNPKGLTVDDRGNIYVADTVNNAIRKIS 232

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2016189 AT1G70280 "AT1G70280" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 7.1e-15, P = 7.1e-15
 Identities = 45/105 (42%), Positives = 64/105 (60%)

Query:    29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAG- 87
             E+GY+V TV DG +L I P+S+   P + +L++LDS  S  Y +S  LS  S  + + G 
Sbjct:    67 ENGYSVETVFDGSKLGIEPYSIEVLP-NGELLILDSENSNIYKISSSLSLYSRPRLVTGS 125

Query:    88 -DGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
              +G  G+ DG    A+ + PK   VD +GNIYVAD  N+ IRKI+
Sbjct:   126 PEGYPGHVDGRLRDAKLNHPKGLTVDDRGNIYVADTVNNAIRKIS 170

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2099357 AT3G14860 "AT3G14860" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 4.6e-13, P = 4.6e-13
 Identities = 40/105 (38%), Positives = 63/105 (60%)

Query:    29 EDGYTVTTVIDGHQLEINPHSV-IDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAG 87
             E+GY V TV++G+ + + P+ + +   G  +L  +D   S    ++ PLS+ S  + +AG
Sbjct:    74 ENGYLVETVVEGNDIGVVPYKIRVSDDG--ELYAVDELNSNIMKITPPLSQYSRGRLVAG 131

Query:    88 D--GVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKI 130
                G  G++DG+P  ARF+ P+   +D KGN+YVAD  N  IRKI
Sbjct:   132 SFQGKTGHADGKPSEARFNHPRGVTMDDKGNVYVADTLNLAIRKI 176


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      191       170   0.00086  108 3  11 22  0.40    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  155 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.96u 0.15s 16.11t   Elapsed:  00:00:01
  Total cpu time:  15.96u 0.15s 16.11t   Elapsed:  00:00:01
  Start:  Sat May 11 02:10:35 2013   End:  Sat May 11 02:10:36 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pm.C_LG_IV000256	hypothetical protein (241 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XIII.601.1	SubName- Full=Putative uncharacterized protein; (1016 aa)			•						0.429

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	191
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	2e-05
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	2e-04
pfam01436	28	pfam01436, NHL, NHL repeat	0.004

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 82  VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDHGNQLIR 141
           V  LAG G  G+ DG+   A+  +P   A+   G ++VAD +N +IR +         I 
Sbjct: 837 VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAAEIL 896

Query: 142 QINLK 146
            + LK
Sbjct: 897 TLELK 901

Length = 1057

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 84  RLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNI-YVADKSNHVIRKITNLDHGNQLIR 141
           ++   G +G  DG    A F++P+  A + K N+ YVAD  NH +R+I   D  N+ +R
Sbjct: 604 QIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI---DFVNETVR 659

Length = 1057

>gnl|CDD|110440 pfam01436, NHL, NHL repeat

 Score = 33.5 bits (78), Expect = 0.004
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 103 FDKPKSFAVDMKGNIYVADKSNHVIRKI 130
           F++P   AVD  G++YVAD  NH ++  
Sbjct: 1   FNRPHGVAVDSDGDVYVADSENHRVQVF 28

The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies. It is about 40 residues long and resembles the WD repeat pfam00400. The repeats have a catalytic activity in bovine PAM (peptidyl-glycine alpha-amidating monooxygenase), proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localised to the repeats. Human E3 ubiquitin-protein ligase TRIM32 interacts with the activation domain of Tat. This interaction is me diated by the NHL repeats. Length = 28

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.45
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.36
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.3
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.23
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.06
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.95
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.74
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.63
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.57
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	98.4
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.29
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	97.83
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.74
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	97.72
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.68
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.59
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.53
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.47
COG3391	381	Uncharacterized conserved protein [Function unknow	97.4
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.36
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	97.24
KOG1214	1289	consensus Nidogen and related basement membrane pr	97.22
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.2
PRK11028	330	6-phosphogluconolactonase; Provisional	97.14
COG3391	381	Uncharacterized conserved protein [Function unknow	96.95
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	96.92
COG3211	616	PhoX Predicted phosphatase [General function predi	96.9
PRK11028	330	6-phosphogluconolactonase; Provisional	96.87
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.78
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	96.66
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.49
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	96.44
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	96.35
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.3
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.22
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	96.14
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	96.11
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	96.1
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	95.86
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	95.84
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.49
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	95.36
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.32
KOG1214	1289	consensus Nidogen and related basement membrane pr	95.26
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	95.15
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.01
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.64
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	94.38
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.36
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	93.84
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	93.53
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.45
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	93.26
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.95
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	92.93
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	92.77
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	92.06
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	91.84
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	90.91
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	89.45
PRK02888	635	nitrous-oxide reductase; Validated	88.66
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	87.89
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	87.67
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	87.17
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	86.26
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	85.82
PRK02888	635	nitrous-oxide reductase; Validated	85.64
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	85.6
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	85.59
KOG3567	501	consensus Peptidylglycine alpha-amidating monooxyg	85.0
smart00284	255	OLF Olfactomedin-like domains.	83.09
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	82.56

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.45  E-value=8.8e-13  Score=129.66  Aligned_cols=89  Identities=27%  Similarity=0.403  Sum_probs=80.6

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~  123 (191)
                      +.+|.+++++ ++|++||+|..||+|++++.   .++.+.+++|.+..|+.||....++|+.|.||++|++|++||+|+.
T Consensus       803 l~~P~Gvavd-~dG~LYVADs~N~rIrviD~---~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~  878 (1057)
T PLN02919        803 LQHPLGVLCA-KDGQIYVADSYNHKIKKLDP---ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN  878 (1057)
T ss_pred             ccCCceeeEe-CCCcEEEEECCCCEEEEEEC---CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence            5689999995 78899999999999999995   4678899999888888888888999999999999999999999999


Q ss_pred             CCEEEEEeCCCCC
Q 029556          124 NHVIRKITNLDHG  136 (191)
Q Consensus       124 n~rIr~i~~~~~~  136 (191)
                      |++||+++...+.
T Consensus       879 Nn~Irvid~~~~~  891 (1057)
T PLN02919        879 NSLIRYLDLNKGE  891 (1057)
T ss_pred             CCEEEEEECCCCc
Confidence            9999999986643

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.36  E-value=6.6e-12  Score=123.55  Aligned_cols=94  Identities=24%  Similarity=0.378  Sum_probs=78.7

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecC-CCccCCCCCCcccccCCCceEEEcCCCC-EEEEe
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGD-GVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVAD  121 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~-~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD  121 (191)
                      +..|.++++++.++++||+|+++|||++++.    +|.+...+|. +..|..||....++|+.|.||++|++|+ |||||
T Consensus       567 l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~----~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD  642 (1057)
T PLN02919        567 LKFPGKLAIDLLNNRLFISDSNHNRIVVTDL----DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD  642 (1057)
T ss_pred             CCCCceEEEECCCCeEEEEECCCCeEEEEeC----CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe
Confidence            4789999997568999999999999999984    6666655554 6677778888889999999999998866 89999


Q ss_pred             CCCCEEEEEeCCCCCceEEE
Q 029556          122 KSNHVIRKITNLDHGNQLIR  141 (191)
Q Consensus       122 ~~n~rIr~i~~~~~~~~~i~  141 (191)
                      +.|++||+++..++..+++.
T Consensus       643 t~n~~Ir~id~~~~~V~tla  662 (1057)
T PLN02919        643 TENHALREIDFVNETVRTLA  662 (1057)
T ss_pred             CCCceEEEEecCCCEEEEEe
Confidence            99999999998776555554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.30  E-value=8.9e-11  Score=97.00  Aligned_cols=114  Identities=26%  Similarity=0.344  Sum_probs=78.3

Q ss_pred             EEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCC--ceEEEEecCCCccCCCCCCcccccCCCceEE
Q 029556           33 TVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE--SVVKRLAGDGVQGYSDGEPGSARFDKPKSFA  110 (191)
Q Consensus        33 ~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~--g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIa  110 (191)
                      .++.+.++.   ..|+||++++++..|||+|+.+++|++++++....  .....++....           ....|.|++
T Consensus       125 ~~~~~~~~~---~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----------~~g~pDG~~  190 (246)
T PF08450_consen  125 KVTVVADGL---GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG-----------GPGYPDGLA  190 (246)
T ss_dssp             EEEEEEEEE---SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS-----------SSCEEEEEE
T ss_pred             eEEEEecCc---ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC-----------CCcCCCcce
Confidence            555555544   48999999877778999999999999999743211  12333432210           113699999


Q ss_pred             EcCCCCEEEEeCCCCEEEEEeCCCCCceEEEEeccC---CCceEeccCCCCccEEEE
Q 029556          111 VDMKGNIYVADKSNHVIRKITNLDHGNQLIRQINLK---PEDCSKSSQSGSGMFWVT  164 (191)
Q Consensus       111 vD~~G~iyVaD~~n~rIr~i~~~~~~~~~i~~i~~~---~~~~~~~~~~g~~~~~~~  164 (191)
                      +|++|+||+|++.+++|+++++++   +.++.+.++   ++.|++... ....+|+.
T Consensus       191 vD~~G~l~va~~~~~~I~~~~p~G---~~~~~i~~p~~~~t~~~fgg~-~~~~L~vT  243 (246)
T PF08450_consen  191 VDSDGNLWVADWGGGRIVVFDPDG---KLLREIELPVPRPTNCAFGGP-DGKTLYVT  243 (246)
T ss_dssp             EBTTS-EEEEEETTTEEEEEETTS---CEEEEEE-SSSSEEEEEEEST-TSSEEEEE
T ss_pred             EcCCCCEEEEEcCCCEEEEECCCc---cEEEEEcCCCCCEEEEEEECC-CCCEEEEE
Confidence            999999999999999999999986   466666666   456777432 33355554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.23  E-value=7.6e-11  Score=114.39  Aligned_cols=115  Identities=25%  Similarity=0.290  Sum_probs=91.2

Q ss_pred             eeeccCccEEecCCcEEEEEE-cCcc---------CCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCC--CCCceEEEE
Q 029556           18 LFSLVSSGLLLEDGYTVTTVI-DGHQ---------LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPL--SEESVVKRL   85 (191)
Q Consensus        18 ~~~~~~g~l~~~dGy~~~~~~-~G~~---------~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~--~~~g~v~~~   85 (191)
                      |+..|+|+|+..|--.++++. +|+.         ...+-+.||++|-+|.|||+|+..++|+|+..-.  ++.++..++
T Consensus       370 la~a~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evv  449 (1899)
T KOG4659|consen  370 LAYAPDGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVV  449 (1899)
T ss_pred             EEEcCCCcEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEE
Confidence            467899999888766666554 3432         2356799999999999999999999999996422  123678999


Q ss_pred             ecCCC------ccCCCCCC-cccccCCCceEEEcCCCCEEEEeCCCCEEEEEeCCC
Q 029556           86 AGDGV------QGYSDGEP-GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLD  134 (191)
Q Consensus        86 aG~~~------~G~~DG~~-~~a~f~~P~gIavD~~G~iyVaD~~n~rIr~i~~~~  134 (191)
                      ||.|.      ..+.||.. .+|+|..|.||++|+.|++|+||.  .+||++|..+
T Consensus       450 aG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~--t~IR~iD~~g  503 (1899)
T KOG4659|consen  450 AGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADG--TRIRVIDTTG  503 (1899)
T ss_pred             eccCcCccccccccCcchhcccceeccCCceeEccCCcEEEecc--cEEEEeccCc
Confidence            99875      22568876 789999999999999999999996  5799999854

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.06  E-value=5.8e-09  Score=90.17  Aligned_cols=125  Identities=20%  Similarity=0.283  Sum_probs=82.3

Q ss_pred             cCccE-Eec-CCcEEEEEEcC-ccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCC---CCCceEEEEecCCCccCCC
Q 029556           22 VSSGL-LLE-DGYTVTTVIDG-HQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPL---SEESVVKRLAGDGVQGYSD   95 (191)
Q Consensus        22 ~~g~l-~~~-dGy~~~~~~~G-~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~---~~~g~v~~~aG~~~~G~~D   95 (191)
                      +.|.+ ++. +| ...++..+ ..   .|+|||++|++..+|++|+..++|++++.+.   ...+....+.-..    .+
T Consensus       141 ~~G~lyr~~p~g-~~~~l~~~~~~---~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~----~~  212 (307)
T COG3386         141 PTGSLYRVDPDG-GVVRLLDDDLT---IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE----EP  212 (307)
T ss_pred             CcceEEEEcCCC-CEEEeecCcEE---ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC----CC
Confidence            34556 333 44 44444433 44   8999999977779999999999999998752   1122211111111    12


Q ss_pred             CCCcccccCCCceEEEcCCCCEEE-EeCCCCEEEEEeCCCCCceEEEEeccC---CCceEeccCCCCccEEEEEe
Q 029556           96 GEPGSARFDKPKSFAVDMKGNIYV-ADKSNHVIRKITNLDHGNQLIRQINLK---PEDCSKSSQSGSGMFWVTVF  166 (191)
Q Consensus        96 G~~~~a~f~~P~gIavD~~G~iyV-aD~~n~rIr~i~~~~~~~~~i~~i~~~---~~~~~~~~~~g~~~~~~~~~  166 (191)
                      |        .|+|+++|++|++|+ +-++..+|.+++|++   ..+..+.+|   ++.|++.... +..+++.+.
T Consensus       213 G--------~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG---~l~~~i~lP~~~~t~~~FgG~~-~~~L~iTs~  275 (307)
T COG3386         213 G--------LPDGMAVDADGNLWVAAVWGGGRVVRFNPDG---KLLGEIKLPVKRPTNPAFGGPD-LNTLYITSA  275 (307)
T ss_pred             C--------CCCceEEeCCCCEEEecccCCceEEEECCCC---cEEEEEECCCCCCccceEeCCC-cCEEEEEec
Confidence            2        799999999999995 445456999999985   567777777   4667776543 345555543

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.95  E-value=1.1e-09  Score=61.79  Aligned_cols=28  Identities=50%  Similarity=0.837  Sum_probs=26.5

Q ss_pred             cCCCceEEEcCCCCEEEEeCCCCEEEEE
Q 029556          103 FDKPKSFAVDMKGNIYVADKSNHVIRKI  130 (191)
Q Consensus       103 f~~P~gIavD~~G~iyVaD~~n~rIr~i  130 (191)
                      |+.|+|||+|++|+|||||++||||+++
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            6789999999999999999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.74  E-value=9.4e-07  Score=72.93  Aligned_cols=83  Identities=25%  Similarity=0.272  Sum_probs=63.3

Q ss_pred             EEEEEEcC---ccCCCCeeeEEEecCCCeEEEEeCCC--------CeEEEEecCCCCCceEEEEecCCCccCCCCCCccc
Q 029556           33 TVTTVIDG---HQLEINPHSVIDRPGSSDLIVLDSSR--------SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSA  101 (191)
Q Consensus        33 ~~~~~~~G---~~~~~~P~gIav~d~~g~lyVaD~~n--------~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a  101 (191)
                      .++.+.+.   ......|++++++ ++|++|++|...        .++++++.    ++++.....              
T Consensus        71 ~~~~~~~~~~~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~~----~~~~~~~~~--------------  131 (246)
T PF08450_consen   71 KVTVLADLPDGGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRIDP----DGKVTVVAD--------------  131 (246)
T ss_dssp             EEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEET----TSEEEEEEE--------------
T ss_pred             cEEEEeeccCCCcccCCCceEEEc-CCCCEEEEecCCCccccccccceEEECC----CCeEEEEec--------------
Confidence            55555542   2246799999995 889999999877        56899874    566666542              


Q ss_pred             ccCCCceEEEcCCCC-EEEEeCCCCEEEEEeCCC
Q 029556          102 RFDKPKSFAVDMKGN-IYVADKSNHVIRKITNLD  134 (191)
Q Consensus       102 ~f~~P~gIavD~~G~-iyVaD~~n~rIr~i~~~~  134 (191)
                      .+..|+||+++++|. +|++|+.+++|++++...
T Consensus       132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~  165 (246)
T PF08450_consen  132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA  165 (246)
T ss_dssp             EESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred             CcccccceEECCcchheeecccccceeEEEeccc
Confidence            367899999999985 999999999999999853

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.63  E-value=2.8e-07  Score=90.28  Aligned_cols=86  Identities=23%  Similarity=0.377  Sum_probs=72.2

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCC------cc----C--CCCCCcccccCCCceEEEc
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGV------QG----Y--SDGEPGSARFDKPKSFAVD  112 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~------~G----~--~DG~~~~a~f~~P~gIavD  112 (191)
                      -.|+.|++. ..|.|||+++...||-++. .++.||++..++|..+      .+    +  .|+.+++|+|+.|..+|+.
T Consensus       593 ~~~r~Iavg-~~G~lyvaEsD~rriNrvr-~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVs  670 (1899)
T KOG4659|consen  593 LIQRDIAVG-TDGALYVAESDGRRINRVR-KLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVS  670 (1899)
T ss_pred             hhhhceeec-CCceEEEEeccchhhhheE-EeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEEC
Confidence            457999996 8999999999997777765 3457899999999854      11    1  2455689999999999999


Q ss_pred             CCCCEEEEeCCCCEEEEEeC
Q 029556          113 MKGNIYVADKSNHVIRKITN  132 (191)
Q Consensus       113 ~~G~iyVaD~~n~rIr~i~~  132 (191)
                      ++|.+||||.+|.|||++..
T Consensus       671 Pdg~v~IAD~gN~rIr~Vs~  690 (1899)
T KOG4659|consen  671 PDGDVIIADSGNSRIRKVSA  690 (1899)
T ss_pred             CCCcEEEecCCchhhhhhhh
Confidence            99999999999999999876

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.57  E-value=1.7e-07  Score=52.80  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=25.1

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEE
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTL   72 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~   72 (191)
                      ..|+||+++ ++|++||+|++||||+++
T Consensus         2 ~~P~gvav~-~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    2 NYPHGVAVD-SDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             SSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred             cCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence            589999996 999999999999999985

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.40  E-value=5.6e-06  Score=69.09  Aligned_cols=99  Identities=15%  Similarity=0.221  Sum_probs=70.1

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce---EEEEecCCC-ccCCCCCCcccccCCCceEEEcCCCCEEEE
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV---VKRLAGDGV-QGYSDGEPGSARFDKPKSFAVDMKGNIYVA  120 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~---v~~~aG~~~-~G~~DG~~~~a~f~~P~gIavD~~G~iyVa  120 (191)
                      ..|+|+++|-+....|+.|+.|+.|.-++.+. +.|.   ...+..-.. ..+        .--.|+|+++|.+|++|||
T Consensus       158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~-~tG~~snr~~i~dlrk~~~~--------e~~~PDGm~ID~eG~L~Va  228 (310)
T KOG4499|consen  158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDC-PTGDLSNRKVIFDLRKSQPF--------ESLEPDGMTIDTEGNLYVA  228 (310)
T ss_pred             cCCccccccccCcEEEEEccCceEEeeeecCC-CcccccCcceeEEeccCCCc--------CCCCCCcceEccCCcEEEE
Confidence            47999999756778999999999996666543 2332   222221111 111        1126999999999999999


Q ss_pred             eCCCCEEEEEeCCCCCceEEEEeccCC---CceEecc
Q 029556          121 DKSNHVIRKITNLDHGNQLIRQINLKP---EDCSKSS  154 (191)
Q Consensus       121 D~~n~rIr~i~~~~~~~~~i~~i~~~~---~~~~~~~  154 (191)
                      -+...+|.+++|..+  ..+.++.+|.   +.|++..
T Consensus       229 ~~ng~~V~~~dp~tG--K~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  229 TFNGGTVQKVDPTTG--KILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             EecCcEEEEECCCCC--cEEEEEEcCCCceEEEEecC
Confidence            999999999999765  6777777773   4566654

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.29  E-value=7.2e-06  Score=58.61  Aligned_cols=69  Identities=13%  Similarity=0.074  Sum_probs=51.0

Q ss_pred             eeEEEecCCCeEEEEeCCC-----------------CeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEE
Q 029556           48 HSVIDRPGSSDLIVLDSSR-----------------SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFA  110 (191)
Q Consensus        48 ~gIav~d~~g~lyVaD~~n-----------------~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIa  110 (191)
                      +++++++.+|.+|++|+..                 +|+.++|+   .+++.++++.              .|..|+||+
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp---~t~~~~vl~~--------------~L~fpNGVa   63 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDP---STKETTVLLD--------------GLYFPNGVA   63 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEET---TTTEEEEEEE--------------EESSEEEEE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEEC---CCCeEEEehh--------------CCCccCeEE
Confidence            4788864459999999755                 78888885   4566667663              377999999


Q ss_pred             EcCCCC-EEEEeCCCCEEEEEeCC
Q 029556          111 VDMKGN-IYVADKSNHVIRKITNL  133 (191)
Q Consensus       111 vD~~G~-iyVaD~~n~rIr~i~~~  133 (191)
                      +++++. +.||++..+||.|+-..
T Consensus        64 ls~d~~~vlv~Et~~~Ri~rywl~   87 (89)
T PF03088_consen   64 LSPDESFVLVAETGRYRILRYWLK   87 (89)
T ss_dssp             E-TTSSEEEEEEGGGTEEEEEESS
T ss_pred             EcCCCCEEEEEeccCceEEEEEEe
Confidence            999987 99999999999998754

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=97.83  E-value=8.8e-05  Score=63.29  Aligned_cols=75  Identities=16%  Similarity=0.227  Sum_probs=63.4

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEe-cCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLA-GDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~a-G~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~  123 (191)
                      ..|+.++.+ ++|.+|+.+.+.+.|=++|.   .+|++.++. |.+              .+|++|.++++|..||+|.+
T Consensus        62 ~ap~dvapa-pdG~VWft~qg~gaiGhLdP---~tGev~~ypLg~G--------------a~Phgiv~gpdg~~Witd~~  123 (353)
T COG4257          62 SAPFDVAPA-PDGAVWFTAQGTGAIGHLDP---ATGEVETYPLGSG--------------ASPHGIVVGPDGSAWITDTG  123 (353)
T ss_pred             CCccccccC-CCCceEEecCccccceecCC---CCCceEEEecCCC--------------CCCceEEECCCCCeeEecCc
Confidence            479999994 89999999999999999985   578887775 432              27999999999999999999


Q ss_pred             CCEEEEEeCCCCCce
Q 029556          124 NHVIRKITNLDHGNQ  138 (191)
Q Consensus       124 n~rIr~i~~~~~~~~  138 (191)
                      + .|+|++++..+.+
T Consensus       124 ~-aI~R~dpkt~evt  137 (353)
T COG4257         124 L-AIGRLDPKTLEVT  137 (353)
T ss_pred             c-eeEEecCcccceE
Confidence            8 9999999664443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.74  E-value=0.00046  Score=60.77  Aligned_cols=81  Identities=22%  Similarity=0.222  Sum_probs=58.0

Q ss_pred             CcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCC------------CeEEEEecCCCCCce---EEEEecCCCccCCC
Q 029556           31 GYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSR------------SAFYTLSFPLSEESV---VKRLAGDGVQGYSD   95 (191)
Q Consensus        31 Gy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n------------~~I~~~d~~~~~~g~---v~~~aG~~~~G~~D   95 (191)
                      ||.++.++++. ...+|.+|++ |++|+|||++..+            .+|++++- .+.+|.   .++++.        
T Consensus         1 Gf~~~l~A~~p-~~~~P~~ia~-d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d-~dgdG~~d~~~vfa~--------   69 (367)
T TIGR02604         1 GFKVTLFAAEP-LLRNPIAVCF-DERGRLWVAEGITYSRPAGRQGPLGDRILILED-ADGDGKYDKSNVFAE--------   69 (367)
T ss_pred             CcEEEEEECCC-ccCCCceeeE-CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEc-CCCCCCcceeEEeec--------
Confidence            57788888763 3579999999 5899999998643            37877752 222343   234432        


Q ss_pred             CCCcccccCCCceEEEcCCCCEEEEeCCCCEEEEEe
Q 029556           96 GEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT  131 (191)
Q Consensus        96 G~~~~a~f~~P~gIavD~~G~iyVaD~~n~rIr~i~  131 (191)
                            .+..|+||++.++| +||++.  .+|.++.
T Consensus        70 ------~l~~p~Gi~~~~~G-lyV~~~--~~i~~~~   96 (367)
T TIGR02604        70 ------ELSMVTGLAVAVGG-VYVATP--PDILFLR   96 (367)
T ss_pred             ------CCCCccceeEecCC-EEEeCC--CeEEEEe
Confidence                  25689999999988 999975  4688884

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=97.72  E-value=0.0017  Score=55.55  Aligned_cols=86  Identities=19%  Similarity=0.281  Sum_probs=59.7

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEE------------------------ecC-CCccCCCCCC-
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRL------------------------AGD-GVQGYSDGEP-   98 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~------------------------aG~-~~~G~~DG~~-   98 (191)
                      .+|++|.+. ++|..||+|+++ .|.|++.   ++..++.+                        .|+ +..|.-|-.. 
T Consensus       104 a~Phgiv~g-pdg~~Witd~~~-aI~R~dp---kt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~  178 (353)
T COG4257         104 ASPHGIVVG-PDGSAWITDTGL-AIGRLDP---KTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARN  178 (353)
T ss_pred             CCCceEEEC-CCCCeeEecCcc-eeEEecC---cccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccC
Confidence            789999995 899999999999 9999985   23333322                        111 1111101110 


Q ss_pred             -----cccccCCCceEEEcCCCCEEEEeCCCCEEEEEeCCCC
Q 029556           99 -----GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDH  135 (191)
Q Consensus        99 -----~~a~f~~P~gIavD~~G~iyVaD~~n~rIr~i~~~~~  135 (191)
                           ..-+=..|.|||..++|.+|++....+.|-+||+.+.
T Consensus       179 ~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~  220 (353)
T COG4257         179 VISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAG  220 (353)
T ss_pred             ceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccC
Confidence                 0012347999999999999999999999999999654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.68  E-value=0.0033  Score=54.77  Aligned_cols=90  Identities=13%  Similarity=0.169  Sum_probs=63.1

Q ss_pred             CCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCC-CccCCCCCC-cccccCCCceEEEcCCCC-EEE
Q 029556           43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDG-VQGYSDGEP-GSARFDKPKSFAVDMKGN-IYV  119 (191)
Q Consensus        43 ~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~-~~G~~DG~~-~~a~f~~P~gIavD~~G~-iyV  119 (191)
                      ....|..+++++++..+|++..+.+.|..++++  .+|.+......- ..|.  |.. ....-.+|+++.++++|+ +|+
T Consensus        85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~--~~g~l~~~~~~~~~~g~--g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD--DDGSLGEVVQTVRHEGS--GPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC--TTSEEEEEEEEEESEEE--ESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             CCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc--CCcccceeeeecccCCC--CCcccccccccceeEEECCCCCEEEE
Confidence            346899999988888999999999999998873  456544432110 0011  111 122345899999999976 999


Q ss_pred             EeCCCCEEEEEeCCCCC
Q 029556          120 ADKSNHVIRKITNLDHG  136 (191)
Q Consensus       120 aD~~n~rIr~i~~~~~~  136 (191)
                      +|.+..+|+.++.....
T Consensus       161 ~dlG~D~v~~~~~~~~~  177 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDT  177 (345)
T ss_dssp             EETTTTEEEEEEE-TTS
T ss_pred             EecCCCEEEEEEEeCCC
Confidence            99999999999986543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.59  E-value=0.0009  Score=58.02  Aligned_cols=72  Identities=19%  Similarity=0.256  Sum_probs=55.0

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCC-----------CeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEc
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSR-----------SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVD  112 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n-----------~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD  112 (191)
                      .+.|++..+ +++|.+|+.|..+           .++|+++.    .|.......             ..+..|+|||++
T Consensus       110 ~~r~ND~~v-~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p----~g~~~~l~~-------------~~~~~~NGla~S  171 (307)
T COG3386         110 LNRPNDGVV-DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP----DGGVVRLLD-------------DDLTIPNGLAFS  171 (307)
T ss_pred             cCCCCceeE-cCCCCEEEeCCCccccCccccCCcceEEEEcC----CCCEEEeec-------------CcEEecCceEEC
Confidence            489999999 4889999999983           45666652    333333221             126689999999


Q ss_pred             CCC-CEEEEeCCCCEEEEEeCC
Q 029556          113 MKG-NIYVADKSNHVIRKITNL  133 (191)
Q Consensus       113 ~~G-~iyVaD~~n~rIr~i~~~  133 (191)
                      ++| .+|++|+..++|.+++.+
T Consensus       172 pDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         172 PDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             CCCCEEEEEeCCCCeEEEEecC
Confidence            998 799999999999999875

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.53  E-value=0.0024  Score=55.65  Aligned_cols=95  Identities=13%  Similarity=0.187  Sum_probs=65.8

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~  123 (191)
                      ..|.+|+++|++..|||+..+.+.|..++++. .+|+++.+.-....           -..|.+++++++|+ +||+...
T Consensus       245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~-~~g~l~~~~~~~~~-----------G~~Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  245 NAPAEIAISPDGRFLYVSNRGSNSISVFDLDP-ATGTLTLVQTVPTG-----------GKFPRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEECTTTEEEEEEECT-TTTTEEEEEEEEES-----------SSSEEEEEE-TTSSEEEEEETT
T ss_pred             CCceeEEEecCCCEEEEEeccCCEEEEEEEec-CCCceEEEEEEeCC-----------CCCccEEEEeCCCCEEEEEecC
Confidence            47999999877888999999999999998742 34666554322111           13699999999987 9999999


Q ss_pred             CCEEEEEe--CCCCCceEEE-EeccCCCceE
Q 029556          124 NHVIRKIT--NLDHGNQLIR-QINLKPEDCS  151 (191)
Q Consensus       124 n~rIr~i~--~~~~~~~~i~-~i~~~~~~~~  151 (191)
                      .+.|..++  ++++..+.+. .+.++...|.
T Consensus       313 s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci  343 (345)
T PF10282_consen  313 SNTVSVFDIDPDTGKLTPVGSSVPIPSPVCI  343 (345)
T ss_dssp             TTEEEEEEEETTTTEEEEEEEEEESSSEEEE
T ss_pred             CCeEEEEEEeCCCCcEEEecccccCCCCEEE
Confidence            99888765  4454434333 3566655554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.47  E-value=0.001  Score=58.52  Aligned_cols=70  Identities=14%  Similarity=0.240  Sum_probs=51.3

Q ss_pred             CCeeeEEEecCCCeEEEEeCCC-------------------CeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSR-------------------SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDK  105 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n-------------------~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~  105 (191)
                      ..|++++++ ++|+||+++..+                   +.|++++.   ..++++.++.              .+..
T Consensus       124 ~~~~~l~~g-pDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p---dg~~~e~~a~--------------G~rn  185 (367)
T TIGR02604       124 HSLNSLAWG-PDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP---DGGKLRVVAH--------------GFQN  185 (367)
T ss_pred             ccccCceEC-CCCCEEEecccCCCceeccCCCccCcccccCceEEEEec---CCCeEEEEec--------------CcCC
Confidence            448899995 789999988732                   45777763   1234554431              2678


Q ss_pred             CceEEEcCCCCEEEEeCCCCEEEEEeC
Q 029556          106 PKSFAVDMKGNIYVADKSNHVIRKITN  132 (191)
Q Consensus       106 P~gIavD~~G~iyVaD~~n~rIr~i~~  132 (191)
                      |.|+++|++|++|++|..+....++++
T Consensus       186 p~Gl~~d~~G~l~~tdn~~~~~~~i~~  212 (367)
T TIGR02604       186 PYGHSVDSWGDVFFCDNDDPPLCRVTP  212 (367)
T ss_pred             CccceECCCCCEEEEccCCCceeEEcc
Confidence            999999999999999988776666665

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.0013  Score=58.42  Aligned_cols=73  Identities=19%  Similarity=0.352  Sum_probs=57.3

Q ss_pred             CCeeeEEEecCCCeEEEEeC--CCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEe
Q 029556           45 INPHSVIDRPGSSDLIVLDS--SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVAD  121 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~--~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD  121 (191)
                      ..|+++++++.++.+||+|.  .++++.++|.   ..+.+....-.       |       ..|.++++|++|+ +|++|
T Consensus       116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~---~t~~~~~~~~v-------G-------~~P~~~a~~p~g~~vyv~~  178 (381)
T COG3391         116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDA---ATNKVTATIPV-------G-------NTPTGVAVDPDGNKVYVTN  178 (381)
T ss_pred             cCCceEEECCCCCEEEEEecccCCceEEEEeC---CCCeEEEEEec-------C-------CCcceEEECCCCCeEEEEe
Confidence            58999999877889999999  5799999984   23333322211       1       1689999999998 99999


Q ss_pred             CCCCEEEEEeCCC
Q 029556          122 KSNHVIRKITNLD  134 (191)
Q Consensus       122 ~~n~rIr~i~~~~  134 (191)
                      ..+++|-.++...
T Consensus       179 ~~~~~v~vi~~~~  191 (381)
T COG3391         179 SDDNTVSVIDTSG  191 (381)
T ss_pred             cCCCeEEEEeCCC
Confidence            9999999999644

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.36  E-value=0.0019  Score=54.44  Aligned_cols=78  Identities=18%  Similarity=0.334  Sum_probs=46.8

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~  123 (191)
                      ...|-+++++|..+++||....++++..+|    .+|++.-..--. .|.   .+-...+..|.|||+|++|+|||+-.-
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d----~~G~~~~~~~L~-~g~---~gl~~~~~QpEGIa~d~~G~LYIvsEp  241 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELD----RQGRVVSSLSLD-RGF---HGLSKDIPQPEGIAFDPDGNLYIVSEP  241 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE-----TT--EEEEEE-S-TTG---GG-SS---SEEEEEE-TT--EEEEETT
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEEC----CCCCEEEEEEeC-Ccc---cCcccccCCccEEEECCCCCEEEEcCC
Confidence            468999999988999999999999999998    477754333211 111   011346789999999999999999876


Q ss_pred             CCEEEEE
Q 029556          124 NHVIRKI  130 (191)
Q Consensus       124 n~rIr~i  130 (191)
                      | +..+|
T Consensus       242 N-lfy~f  247 (248)
T PF06977_consen  242 N-LFYRF  247 (248)
T ss_dssp             T-EEEEE
T ss_pred             c-eEEEe
Confidence            5 55554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=97.24  E-value=0.0026  Score=56.25  Aligned_cols=67  Identities=21%  Similarity=0.307  Sum_probs=47.2

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n  124 (191)
                      -+|-|++++..+|++||||..- -+++++.   ..|..+.++..     .+    ...+...+++.+|++|.+|++|+..
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYl-GL~~V~p---~g~~a~~l~~~-----~~----G~~~kf~N~ldI~~~g~vyFTDSSs  181 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYL-GLLKVGP---EGGLAELLADE-----AE----GKPFKFLNDLDIDPEGVVYFTDSSS  181 (376)
T ss_pred             CCcceEEeccCCCeEEEEecce-eeEEECC---CCCcceecccc-----cc----CeeeeecCceeEcCCCeEEEecccc
Confidence            5799999975566999999776 5666663   23333333321     12    2467778899999999999999764

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=97.22  E-value=0.0026  Score=61.14  Aligned_cols=75  Identities=17%  Similarity=0.181  Sum_probs=56.8

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCC-CCEEEEeC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK-GNIYVADK  122 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~-G~iyVaD~  122 (191)
                      +..|+|||+|....++|.+|+.+.+|-.-.+    +|+.+.+.=            ..-|-.|.+|++|.- |+||.+||
T Consensus      1067 L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~L----dG~~rkvLf------------~tdLVNPR~iv~D~~rgnLYwtDW 1130 (1289)
T KOG1214|consen 1067 LISPEGIAVDHIRRNMYWTDSVLDKIEVALL----DGSERKVLF------------YTDLVNPRAIVVDPIRGNLYWTDW 1130 (1289)
T ss_pred             CCCccceeeeeccceeeeeccccchhheeec----CCceeeEEE------------eecccCcceEEeecccCceeeccc
Confidence            4699999998789999999999999887764    554222210            123668999999996 89999998


Q ss_pred             C--CCEEEEEeCCC
Q 029556          123 S--NHVIRKITNLD  134 (191)
Q Consensus       123 ~--n~rIr~i~~~~  134 (191)
                      .  |-.|.+.++++
T Consensus      1131 nRenPkIets~mDG 1144 (1289)
T KOG1214|consen 1131 NRENPKIETSSMDG 1144 (1289)
T ss_pred             cccCCcceeeccCC
Confidence            6  55777777744

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.20  E-value=0.0027  Score=58.85  Aligned_cols=84  Identities=17%  Similarity=0.268  Sum_probs=55.8

Q ss_pred             CCCCeeeEEEecCCCeEEEEeCCCC-------------------eEEEEecCCC-C---CceEEEE--ecCCC--ccCCC
Q 029556           43 LEINPHSVIDRPGSSDLIVLDSSRS-------------------AFYTLSFPLS-E---ESVVKRL--AGDGV--QGYSD   95 (191)
Q Consensus        43 ~~~~P~gIav~d~~g~lyVaD~~n~-------------------~I~~~d~~~~-~---~g~v~~~--aG~~~--~G~~D   95 (191)
                      .+.+|++|+++|.++.+|++-+.+.                   +|++++.+-. .   ..+...+  .|...  .....
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            4689999999988999999988887                   7888875211 0   0133333  33321  11111


Q ss_pred             CCCcccccCCCceEEEcCCCCEEEE-eCCCCE
Q 029556           96 GEPGSARFDKPKSFAVDMKGNIYVA-DKSNHV  126 (191)
Q Consensus        96 G~~~~a~f~~P~gIavD~~G~iyVa-D~~n~r  126 (191)
                      +......|+.|++|++|++|+|||+ |.+++.
T Consensus       428 ~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~  459 (524)
T PF05787_consen  428 NKCDDNGFASPDNLAFDPDGNLWIQEDGGGSN  459 (524)
T ss_pred             CcccCCCcCCCCceEECCCCCEEEEeCCCCCC
Confidence            2224668999999999999999997 444443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.14  E-value=0.014  Score=50.00  Aligned_cols=79  Identities=13%  Similarity=0.127  Sum_probs=55.4

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~  123 (191)
                      ..|++++++|++..+|+++.+.++|..++.+  .+|.+......... ...|       ..|.+++++++|. +|+++..
T Consensus       126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~--~~g~l~~~~~~~~~-~~~g-------~~p~~~~~~pdg~~lyv~~~~  195 (330)
T PRK11028        126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTLS--DDGHLVAQEPAEVT-TVEG-------AGPRHMVFHPNQQYAYCVNEL  195 (330)
T ss_pred             CcccEeEeCCCCCEEEEeeCCCCEEEEEEEC--CCCcccccCCCcee-cCCC-------CCCceEEECCCCCEEEEEecC
Confidence            4789999987777899999999999999863  23433211000000 0001       2589999999976 8999998


Q ss_pred             CCEEEEEeCC
Q 029556          124 NHVIRKITNL  133 (191)
Q Consensus       124 n~rIr~i~~~  133 (191)
                      .+.|..++..
T Consensus       196 ~~~v~v~~~~  205 (330)
T PRK11028        196 NSSVDVWQLK  205 (330)
T ss_pred             CCEEEEEEEe
Confidence            8999888764

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.95  E-value=0.024  Score=50.33  Aligned_cols=81  Identities=21%  Similarity=0.222  Sum_probs=60.0

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~  123 (191)
                      ..|.+++++|.+..+|++|..+++|..++.    ++..... +....       ....+..|.+++++++|+ +|+++..
T Consensus       160 ~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~----~~~~v~~-~~~~~-------~~~~~~~P~~i~v~~~g~~~yV~~~~  227 (381)
T COG3391         160 NTPTGVAVDPDGNKVYVTNSDDNTVSVIDT----SGNSVVR-GSVGS-------LVGVGTGPAGIAVDPDGNRVYVANDG  227 (381)
T ss_pred             CCcceEEECCCCCeEEEEecCCCeEEEEeC----CCcceec-ccccc-------ccccCCCCceEEECCCCCEEEEEecc
Confidence            479999997656669999999999999984    3322221 22111       133566899999999987 9999988


Q ss_pred             C--CEEEEEeCCCCCc
Q 029556          124 N--HVIRKITNLDHGN  137 (191)
Q Consensus       124 n--~rIr~i~~~~~~~  137 (191)
                      +  .++.+++...+..
T Consensus       228 ~~~~~v~~id~~~~~v  243 (381)
T COG3391         228 SGSNNVLKIDTATGNV  243 (381)
T ss_pred             CCCceEEEEeCCCceE
Confidence            7  6999999876544

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=96.92  E-value=0.0047  Score=43.80  Aligned_cols=52  Identities=19%  Similarity=0.179  Sum_probs=44.9

Q ss_pred             eccCccEEecCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEec
Q 029556           20 SLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSF   74 (191)
Q Consensus        20 ~~~~g~l~~~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~   74 (191)
                      .++-+.+..-||-..+++++|..   .|+||++++++..|||++...+.|+.+..
T Consensus        32 ~~~~~~Vvyyd~~~~~~va~g~~---~aNGI~~s~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   32 GLPWGNVVYYDGKEVKVVASGFS---FANGIAISPDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             cCCCceEEEEeCCEeEEeeccCC---CCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence            46778887777778999998866   99999998778899999999999999875

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=96.90  E-value=0.0069  Score=56.19  Aligned_cols=80  Identities=13%  Similarity=0.223  Sum_probs=52.3

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCC----------------eEEEEecCC----CCCceEEEEecCCCccCCCC---CC-c
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRS----------------AFYTLSFPL----SEESVVKRLAGDGVQGYSDG---EP-G   99 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~----------------~I~~~d~~~----~~~g~v~~~aG~~~~G~~DG---~~-~   99 (191)
                      +.+|++|++.|..+++|++.++|.                +|+|+-..-    +...+..+++-.+.+...++   .. .
T Consensus       416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~  495 (616)
T COG3211         416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN  495 (616)
T ss_pred             ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence            479999999888889999999886                455554310    01124445543332222222   11 3


Q ss_pred             ccccCCCceEEEcCCCCEEEEeCC
Q 029556          100 SARFDKPKSFAVDMKGNIYVADKS  123 (191)
Q Consensus       100 ~a~f~~P~gIavD~~G~iyVaD~~  123 (191)
                      ...|+.|++|++|+.|+|||+.-+
T Consensus       496 ~~~f~~PDnl~fD~~GrLWi~TDg  519 (616)
T COG3211         496 ANWFNSPDNLAFDPWGRLWIQTDG  519 (616)
T ss_pred             cccccCCCceEECCCCCEEEEecC
Confidence            367999999999999999997433

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.87  E-value=0.03  Score=47.87  Aligned_cols=77  Identities=12%  Similarity=0.056  Sum_probs=55.8

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCC-CEEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG-NIYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G-~iyVaD~~  123 (191)
                      .+|.+++++|++..+|++....++|..++.+  ++|......... .          ....|++++++++| .+|+++.+
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~--~~g~~~~~~~~~-~----------~~~~~~~~~~~p~g~~l~v~~~~  146 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLD--KDGIPVAPIQII-E----------GLEGCHSANIDPDNRTLWVPCLK  146 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEEC--CCCCCCCceeec-c----------CCCcccEeEeCCCCCEEEEeeCC
Confidence            4799999987777899999888999888763  344321111100 0          12369999999997 48899999


Q ss_pred             CCEEEEEeCCC
Q 029556          124 NHVIRKITNLD  134 (191)
Q Consensus       124 n~rIr~i~~~~  134 (191)
                      .++|+.++...
T Consensus       147 ~~~v~v~d~~~  157 (330)
T PRK11028        147 EDRIRLFTLSD  157 (330)
T ss_pred             CCEEEEEEECC
Confidence            99999998754

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.78  E-value=0.081  Score=46.82  Aligned_cols=96  Identities=7%  Similarity=-0.057  Sum_probs=67.6

Q ss_pred             CCeeeEEEecCCCeEEEEeC---------CCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCC
Q 029556           45 INPHSVIDRPGSSDLIVLDS---------SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG  115 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~---------~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G  115 (191)
                      ..|+++ ++|++..+||+.+         ..+.|..+|.   .+.++..-.-.+      +.+.......|..+++.++|
T Consensus        47 ~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~---~t~~~~~~i~~p------~~p~~~~~~~~~~~~ls~dg  116 (352)
T TIGR02658        47 FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDP---QTHLPIADIELP------EGPRFLVGTYPWMTSLTPDN  116 (352)
T ss_pred             CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEEC---ccCcEEeEEccC------CCchhhccCccceEEECCCC
Confidence            589997 8788899999999         8899999985   343322111111      00111234578899999998


Q ss_pred             C-EEEEeCC-CCEEEEEeCCCCCceEEEEeccCCCceEe
Q 029556          116 N-IYVADKS-NHVIRKITNLDHGNQLIRQINLKPEDCSK  152 (191)
Q Consensus       116 ~-iyVaD~~-n~rIr~i~~~~~~~~~i~~i~~~~~~~~~  152 (191)
                      . +||+... .+.|-++|.+.+  +.+++|..+.....|
T Consensus       117 k~l~V~n~~p~~~V~VvD~~~~--kvv~ei~vp~~~~vy  153 (352)
T TIGR02658       117 KTLLFYQFSPSPAVGVVDLEGK--AFVRMMDVPDCYHIF  153 (352)
T ss_pred             CEEEEecCCCCCEEEEEECCCC--cEEEEEeCCCCcEEE
Confidence            5 9999966 889999998765  677888876543333

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=96.66  E-value=0.006  Score=43.56  Aligned_cols=53  Identities=19%  Similarity=0.179  Sum_probs=41.0

Q ss_pred             eeccCccE--EecCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEec
Q 029556           19 FSLVSSGL--LLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSF   74 (191)
Q Consensus        19 ~~~~~g~l--~~~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~   74 (191)
                      -+-|+|.+  +-|..-..+++.+|..   .|+||++++++..++|+++..+||.|+-+
T Consensus        32 e~~~~GRll~ydp~t~~~~vl~~~L~---fpNGVals~d~~~vlv~Et~~~Ri~rywl   86 (89)
T PF03088_consen   32 EGRPTGRLLRYDPSTKETTVLLDGLY---FPNGVALSPDESFVLVAETGRYRILRYWL   86 (89)
T ss_dssp             HT---EEEEEEETTTTEEEEEEEEES---SEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred             cCCCCcCEEEEECCCCeEEEehhCCC---ccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence            46788988  4555558888989877   99999998777779999999999999864

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.49  E-value=0.34  Score=39.43  Aligned_cols=96  Identities=15%  Similarity=0.189  Sum_probs=60.5

Q ss_pred             eeeccCccEEe---cCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCC
Q 029556           18 LFSLVSSGLLL---EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYS   94 (191)
Q Consensus        18 ~~~~~~g~l~~---~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~   94 (191)
                      ++...++.++.   ..+-.+.+ ..+.   ..|.+++++|++..+|++....+.|+.++.   .+++.......      
T Consensus         5 ~s~~~d~~v~~~d~~t~~~~~~-~~~~---~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~---~~~~~~~~~~~------   71 (300)
T TIGR03866         5 VSNEKDNTISVIDTATLEVTRT-FPVG---QRPRGITLSKDGKLLYVCASDSDTIQVIDL---ATGEVIGTLPS------   71 (300)
T ss_pred             EEecCCCEEEEEECCCCceEEE-EECC---CCCCceEECCCCCEEEEEECCCCeEEEEEC---CCCcEEEeccC------
Confidence            34555666643   23433333 3332   368899997555668888888899999985   34443322110      


Q ss_pred             CCCCcccccCCCceEEEcCCCC-EEEEeCCCCEEEEEeCCC
Q 029556           95 DGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNLD  134 (191)
Q Consensus        95 DG~~~~a~f~~P~gIavD~~G~-iyVaD~~n~rIr~i~~~~  134 (191)
                       +       ..|..++++++|+ +|++....++|+.++..+
T Consensus        72 -~-------~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~  104 (300)
T TIGR03866        72 -G-------PDPELFALHPNGKILYIANEDDNLVTVIDIET  104 (300)
T ss_pred             -C-------CCccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence             0       1356788888876 777776677899998855

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=96.44  E-value=0.051  Score=49.61  Aligned_cols=94  Identities=13%  Similarity=0.147  Sum_probs=64.9

Q ss_pred             EecCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCC
Q 029556           27 LLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP  106 (191)
Q Consensus        27 ~~~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P  106 (191)
                      ..+.+|.++++++|..   +|.+|++. ++|+++|++...++|++++.   .++....+.+....      ........+
T Consensus        15 ~~p~~f~~~~va~GL~---~Pw~mafl-PDG~llVtER~~G~I~~v~~---~~~~~~~~~~l~~v------~~~~ge~GL   81 (454)
T TIGR03606        15 AASENFDKKVLLSGLN---KPWALLWG-PDNQLWVTERATGKILRVNP---ETGEVKVVFTLPEI------VNDAQHNGL   81 (454)
T ss_pred             cCCCCcEEEEEECCCC---CceEEEEc-CCCeEEEEEecCCEEEEEeC---CCCceeeeecCCce------eccCCCCce
Confidence            4588999999999876   99999995 78899999998889999973   23343344333210      001124468


Q ss_pred             ceEEEcCC-------CCEEEEeC---------CCCEEEEEeCC
Q 029556          107 KSFAVDMK-------GNIYVADK---------SNHVIRKITNL  133 (191)
Q Consensus       107 ~gIavD~~-------G~iyVaD~---------~n~rIr~i~~~  133 (191)
                      .||+++++       +.||++=+         ...+|.|+...
T Consensus        82 lglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~  124 (454)
T TIGR03606        82 LGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYD  124 (454)
T ss_pred             eeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEec
Confidence            89999854       46999731         24688888764

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=96.35  E-value=0.019  Score=33.88  Aligned_cols=31  Identities=10%  Similarity=-0.091  Sum_probs=28.3

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEec
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSF   74 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~   74 (191)
                      ...|+++++++.++.+|.+|...++|.+.++
T Consensus         8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~   38 (43)
T smart00135        8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANL   38 (43)
T ss_pred             CCCcCEEEEeecCCEEEEEeCCCCEEEEEeC
Confidence            3599999999889999999999999999986

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.30  E-value=0.12  Score=42.06  Aligned_cols=81  Identities=10%  Similarity=0.070  Sum_probs=55.9

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCCC
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSN  124 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~n  124 (191)
                      .|.++++++++..+|++...++++..+|.   .++++......       +       ..|.+++++++|. ||++....
T Consensus       208 ~~~~i~~s~dg~~~~~~~~~~~~i~v~d~---~~~~~~~~~~~-------~-------~~~~~~~~~~~g~~l~~~~~~~  270 (300)
T TIGR03866       208 QPVGIKLTKDGKTAFVALGPANRVAVVDA---KTYEVLDYLLV-------G-------QRVWQLAFTPDEKYLLTTNGVS  270 (300)
T ss_pred             CccceEECCCCCEEEEEcCCCCeEEEEEC---CCCcEEEEEEe-------C-------CCcceEEECCCCCEEEEEcCCC
Confidence            57789997666677898888888999985   34554332211       0       1478999999986 67777667


Q ss_pred             CEEEEEeCCCCCceEEEEecc
Q 029556          125 HVIRKITNLDHGNQLIRQINL  145 (191)
Q Consensus       125 ~rIr~i~~~~~~~~~i~~i~~  145 (191)
                      +.|+.++.++.  +.++.+.+
T Consensus       271 ~~i~v~d~~~~--~~~~~~~~  289 (300)
T TIGR03866       271 NDVSVIDVAAL--KVIKSIKV  289 (300)
T ss_pred             CeEEEEECCCC--cEEEEEEc
Confidence            88999999775  34444443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.22  E-value=0.098  Score=45.41  Aligned_cols=88  Identities=18%  Similarity=0.206  Sum_probs=50.6

Q ss_pred             eeeEEEecCCCeEE-EEeCCC----CeEEEEecCCCCCc--eEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEE
Q 029556           47 PHSVIDRPGSSDLI-VLDSSR----SAFYTLSFPLSEES--VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYV  119 (191)
Q Consensus        47 P~gIav~d~~g~ly-VaD~~n----~~I~~~d~~~~~~g--~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyV  119 (191)
                      =-||++++.++.+| |+|.+.    -+++.++.+...++  .+.. .+...--..+|..-...-..|.||++.++|.+||
T Consensus        22 lSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~i  100 (326)
T PF13449_consen   22 LSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTI-LDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWI  100 (326)
T ss_pred             EeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEe-ccceeccCCCCCcCCcCCCChhHeEEecCCCEEE
Confidence            36788854455544 666555    33666665432111  1111 1110000112322111223899999988999999


Q ss_pred             EeCCC------CEEEEEeCCCC
Q 029556          120 ADKSN------HVIRKITNLDH  135 (191)
Q Consensus       120 aD~~n------~rIr~i~~~~~  135 (191)
                      ++.+.      ++|+++++.+.
T Consensus       101 s~E~~~~~~~~p~I~~~~~~G~  122 (326)
T PF13449_consen  101 SSEGGRTGGIPPRIRRFDLDGR  122 (326)
T ss_pred             EeCCccCCCCCCEEEEECCCCc
Confidence            99999      99999998754

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=96.14  E-value=0.029  Score=48.07  Aligned_cols=64  Identities=16%  Similarity=0.172  Sum_probs=46.4

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCC-CceEEEEecCCCccCCCCCCcccccCCCceEEEcC--CCCEEEEe
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSE-ESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM--KGNIYVAD  121 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~-~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~--~G~iyVaD  121 (191)
                      ...|+++| ++|+||+++..++.|.+.+.+..- ..+..+++-.           +..+.+|++++++.  +|.+|+.-
T Consensus       187 ~s~g~~~D-~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d-----------~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  187 QSDGMAID-PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQD-----------PRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             SECEEEEE-TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE------------CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCceEEEC-CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEc-----------CceeeccceeeeccccCceEEEEE
Confidence            45789995 899999999999999999852100 0256666632           23588999999999  89999974

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=96.11  E-value=0.012  Score=52.23  Aligned_cols=88  Identities=17%  Similarity=0.224  Sum_probs=60.6

Q ss_pred             eeeccCccE-EecCCc-EEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCC
Q 029556           18 LFSLVSSGL-LLEDGY-TVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSD   95 (191)
Q Consensus        18 ~~~~~~g~l-~~~dGy-~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~D   95 (191)
                      +.+-++|.+ +...-. ..+++.++..   .|+|++.+++++.+.++++...||.|+-+.-.+-|+...++- +-+    
T Consensus       193 l~g~~~GRl~~YD~~tK~~~VLld~L~---F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~-~LP----  264 (376)
T KOG1520|consen  193 LEGDPTGRLFRYDPSTKVTKVLLDGLY---FPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAE-GLP----  264 (376)
T ss_pred             ecCCCccceEEecCcccchhhhhhccc---ccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhh-cCC----
Confidence            445588888 333322 3334556555   999999998888999999999999998653222233344432 112    


Q ss_pred             CCCcccccCCCceEEEcCCCCEEEEe
Q 029556           96 GEPGSARFDKPKSFAVDMKGNIYVAD  121 (191)
Q Consensus        96 G~~~~a~f~~P~gIavD~~G~iyVaD  121 (191)
                              ..|+.|..+++|++||+-
T Consensus       265 --------G~PDNIR~~~~G~fWVal  282 (376)
T KOG1520|consen  265 --------GYPDNIRRDSTGHFWVAL  282 (376)
T ss_pred             --------CCCcceeECCCCCEEEEE
Confidence                    279999999999999996

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=96.10  E-value=0.018  Score=34.00  Aligned_cols=34  Identities=26%  Similarity=0.325  Sum_probs=29.1

Q ss_pred             ccCCCceEEEcCC-CCEEEEeCCCCEEEEEeCCCC
Q 029556          102 RFDKPKSFAVDMK-GNIYVADKSNHVIRKITNLDH  135 (191)
Q Consensus       102 ~f~~P~gIavD~~-G~iyVaD~~n~rIr~i~~~~~  135 (191)
                      .+..|.|+++|.. +.+|.+|+..++|.+.+.++.
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            4668999999997 569999999999999987653

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=95.86  E-value=0.16  Score=44.89  Aligned_cols=80  Identities=11%  Similarity=0.181  Sum_probs=57.3

Q ss_pred             CCeee---EEEecCCCeEEEE-eC--------CCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEc
Q 029556           45 INPHS---VIDRPGSSDLIVL-DS--------SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVD  112 (191)
Q Consensus        45 ~~P~g---Iav~d~~g~lyVa-D~--------~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD  112 (191)
                      ..|.|   ++++++++.+||+ ..        ..+.|..+|.   .++++...+-.+              ..|++|+++
T Consensus       245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~---~t~kvi~~i~vG--------------~~~~~iavS  307 (352)
T TIGR02658       245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA---KTGKRLRKIELG--------------HEIDSINVS  307 (352)
T ss_pred             cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC---CCCeEEEEEeCC--------------CceeeEEEC
Confidence            45666   9998788999994 32        2268999985   455544433221              269999999


Q ss_pred             CCCC--EEEEeCCCCEEEEEeCCCCCceEEEEe
Q 029556          113 MKGN--IYVADKSNHVIRKITNLDHGNQLIRQI  143 (191)
Q Consensus       113 ~~G~--iyVaD~~n~rIr~i~~~~~~~~~i~~i  143 (191)
                      ++|.  +|++...++.|..||.+..  +.++.+
T Consensus       308 ~Dgkp~lyvtn~~s~~VsViD~~t~--k~i~~i  338 (352)
T TIGR02658       308 QDAKPLLYALSTGDKTLYIFDAETG--KELSSV  338 (352)
T ss_pred             CCCCeEEEEeCCCCCcEEEEECcCC--eEEeee
Confidence            9965  8889888889999998665  455665

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=95.84  E-value=0.11  Score=46.08  Aligned_cols=99  Identities=19%  Similarity=0.255  Sum_probs=61.9

Q ss_pred             eeeeeeccCccEEecCCc---EEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCC
Q 029556           15 LSLLFSLVSSGLLLEDGY---TVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGV   90 (191)
Q Consensus        15 ~~~~~~~~~g~l~~~dGy---~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~   90 (191)
                      +++++.--++.+.+=|+-   .+.++..|..   -+.++++++++..+||+.. .+.|.++|+   .+++ +..+. .+ 
T Consensus         7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~---~h~~~~~s~Dgr~~yv~~r-dg~vsviD~---~~~~~v~~i~-~G-   77 (369)
T PF02239_consen    7 LFYVVERGSGSVAVIDGATNKVVARIPTGGA---PHAGLKFSPDGRYLYVANR-DGTVSVIDL---ATGKVVATIK-VG-   77 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTT-SEEEEEE-STT---EEEEEE-TT-SSEEEEEET-TSEEEEEET---TSSSEEEEEE--S-
T ss_pred             EEEEEecCCCEEEEEECCCCeEEEEEcCCCC---ceeEEEecCCCCEEEEEcC-CCeEEEEEC---CcccEEEEEe-cC-
Confidence            345666667777544442   3444443322   2455778766778999986 569999997   3333 43432 11 


Q ss_pred             ccCCCCCCcccccCCCceEEEcCCCC-EEEEeCCCCEEEEEeCCCC
Q 029556           91 QGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNLDH  135 (191)
Q Consensus        91 ~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~n~rIr~i~~~~~  135 (191)
                                   ..|.|+++.++|. +|++.+..+.+..+|.++.
T Consensus        78 -------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl  110 (369)
T PF02239_consen   78 -------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL  110 (369)
T ss_dssp             -------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT-
T ss_pred             -------------CCcceEEEcCCCCEEEEEecCCCceeEeccccc
Confidence                         1589999999986 8899999999999998653

...

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.49  E-value=0.086  Score=45.91  Aligned_cols=69  Identities=28%  Similarity=0.459  Sum_probs=48.0

Q ss_pred             CCeeeEEEec------CCCeEEEEeCCCCeEEEEecCCCCCceEE---EEecCCCccCCCCCCcccccC-CCceEEEcCC
Q 029556           45 INPHSVIDRP------GSSDLIVLDSSRSAFYTLSFPLSEESVVK---RLAGDGVQGYSDGEPGSARFD-KPKSFAVDMK  114 (191)
Q Consensus        45 ~~P~gIav~d------~~g~lyVaD~~n~~I~~~d~~~~~~g~v~---~~aG~~~~G~~DG~~~~a~f~-~P~gIavD~~  114 (191)
                      ..|.|+++..      -.|.++++|...++|+++.++  .++.+.   .+++              .+. .|.+|+++++
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~--------------~~~~r~~~v~~~pD  316 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLD--EDGSVTEEEEFLG--------------GFGGRPRDVAQGPD  316 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEE--TTEEEEEEEEECT--------------TSSS-EEEEEEETT
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeee--cCCCccceEEccc--------------cCCCCceEEEEcCC
Confidence            4688888852      267899999999999999862  233321   2221              122 6899999999


Q ss_pred             CCEEEEeCCCCEEEE
Q 029556          115 GNIYVADKSNHVIRK  129 (191)
Q Consensus       115 G~iyVaD~~n~rIr~  129 (191)
                      |.|||+|..+++|.|
T Consensus       317 G~Lyv~~d~~G~iyR  331 (331)
T PF07995_consen  317 GALYVSDDSDGKIYR  331 (331)
T ss_dssp             SEEEEEE-TTTTEEE
T ss_pred             CeEEEEECCCCeEeC
Confidence            999999988888875

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=95.36  E-value=1.8  Score=38.14  Aligned_cols=128  Identities=13%  Similarity=0.046  Sum_probs=81.4

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCC-ccCCCCCCcccccCCCceEEEcCCC-CEEEEe
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGV-QGYSDGEPGSARFDKPKSFAVDMKG-NIYVAD  121 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~-~G~~DG~~~~a~f~~P~gIavD~~G-~iyVaD  121 (191)
                      ...|..+++|+.+.-+++|....++|.++.++  .+|.+....+.-. .|  .|+-....-.+++-.-++++| .+++.|
T Consensus        88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~--~dG~l~~~v~~~~h~g--~~p~~rQ~~~h~H~a~~tP~~~~l~v~D  163 (346)
T COG2706          88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQ--ADGSLQPVVQVVKHTG--SGPHERQESPHVHSANFTPDGRYLVVPD  163 (346)
T ss_pred             CCCCeEEEECCCCCEEEEEEccCceEEEEEcc--cCCccccceeeeecCC--CCCCccccCCccceeeeCCCCCEEEEee
Confidence            45679999975555899999999999998763  4576555443311 11  011112223357888899998 588999


Q ss_pred             CCCCEEEEEeCCCCCceEEEEeccCC----CceEeccCCCCccEEEEEecCeEEEeeeeeEEEEEEE
Q 029556          122 KSNHVIRKITNLDHGNQLIRQINLKP----EDCSKSSQSGSGMFWVTVFSPYLISCKSFWVHLYLYF  184 (191)
Q Consensus       122 ~~n~rIr~i~~~~~~~~~i~~i~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (191)
                      -+..||..++.+++.-+......+++    .-.++.+.         ...+|++.+-+.-|-+|-|.
T Consensus       164 LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn---------~k~aY~v~EL~stV~v~~y~  221 (346)
T COG2706         164 LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPN---------GKYAYLVNELNSTVDVLEYN  221 (346)
T ss_pred             cCCceEEEEEcccCccccccccccCCCCCcceEEEcCC---------CcEEEEEeccCCEEEEEEEc
Confidence            99999999999865433222222221    11233322         44567788888888887775

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.32  E-value=0.57  Score=41.93  Aligned_cols=80  Identities=11%  Similarity=0.129  Sum_probs=52.6

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEc----CCCCEEEE
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVD----MKGNIYVA  120 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD----~~G~iyVa  120 (191)
                      ..|+|+++||..+.||+++.. .-||+++.+.+.....+.++...      |   ...-....||++=    .+|.|.++
T Consensus       208 sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~------g---~~l~aDvEGlaly~~~~g~gYLivS  277 (381)
T PF02333_consen  208 SQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASAD------G---DGLVADVEGLALYYGSDGKGYLIVS  277 (381)
T ss_dssp             S-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBS------S---SSB-S-EEEEEEEE-CCC-EEEEEE
T ss_pred             CcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeeccc------c---cccccCccceEEEecCCCCeEEEEE
Confidence            589999999999999999966 59999986432211223332111      1   0112356788872    34679999


Q ss_pred             eCCCCEEEEEeCCC
Q 029556          121 DKSNHVIRKITNLD  134 (191)
Q Consensus       121 D~~n~rIr~i~~~~  134 (191)
                      +.+++....++.++
T Consensus       278 sQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  278 SQGDNSFAVYDREG  291 (381)
T ss_dssp             EGGGTEEEEEESST
T ss_pred             cCCCCeEEEEecCC
Confidence            99999999999865

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=95.26  E-value=0.079  Score=51.39  Aligned_cols=77  Identities=14%  Similarity=0.029  Sum_probs=59.0

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCC-CCEEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK-GNIYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~-G~iyVaD~~  123 (191)
                      ..|-||.+|-.+..+|.+|...+.|.+-.+   ..++.++++-             ..|..|.|||+|-. .|||.+|+.
T Consensus      1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL---~G~Ep~ti~n-------------~~L~SPEGiAVDh~~Rn~ywtDS~ 1088 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASL---EGAEPETIVN-------------SGLISPEGIAVDHIRRNMYWTDSV 1088 (1289)
T ss_pred             ceeeeeecccccceEEEeecCCCccccccc---cCCCCceeec-------------ccCCCccceeeeeccceeeeeccc
Confidence            467888886567789999999999998865   2334555552             34779999999976 589999999


Q ss_pred             CCEEEEEeCCCCCc
Q 029556          124 NHVIRKITNLDHGN  137 (191)
Q Consensus       124 n~rIr~i~~~~~~~  137 (191)
                      +.+|.+...++...
T Consensus      1089 lD~IevA~LdG~~r 1102 (1289)
T KOG1214|consen 1089 LDKIEVALLDGSER 1102 (1289)
T ss_pred             cchhheeecCCcee
Confidence            99998777755433

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=95.15  E-value=0.095  Score=31.83  Aligned_cols=40  Identities=18%  Similarity=0.302  Sum_probs=29.9

Q ss_pred             CeEEEEeCCCC-eEEEEecCCCCCc-eEEEEecCCCccCCCCCCcccccCCCceEEEcC
Q 029556           57 SDLIVLDSSRS-AFYTLSFPLSEES-VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM  113 (191)
Q Consensus        57 g~lyVaD~~n~-~I~~~d~~~~~~g-~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~  113 (191)
                      ++||.+|...+ +|.+.++    +| ..++++..             .+..|.|||+|.
T Consensus         1 ~~iYWtD~~~~~~I~~a~~----dGs~~~~vi~~-------------~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANL----DGSNRRTVISD-------------DLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEET----TSTSEEEEEES-------------STSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEEC----CCCCeEEEEEC-------------CCCCcCEEEECC
Confidence            57999999999 9999986    33 24444422             367999999984

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.01  E-value=0.23  Score=43.23  Aligned_cols=77  Identities=16%  Similarity=0.180  Sum_probs=50.8

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceE-EEEecCCCccCCCCCCcccccCCCceEEEcCC----CCEEE
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK----GNIYV  119 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v-~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~----G~iyV  119 (191)
                      ++|..|++. ++|.+||++. .++|++++    .+|.. ..+.....- .      ......+.||+++++    +.+|+
T Consensus         2 ~~P~~~a~~-pdG~l~v~e~-~G~i~~~~----~~g~~~~~v~~~~~v-~------~~~~~gllgia~~p~f~~n~~lYv   68 (331)
T PF07995_consen    2 NNPRSMAFL-PDGRLLVAER-SGRIWVVD----KDGSLKTPVADLPEV-F------ADGERGLLGIAFHPDFASNGYLYV   68 (331)
T ss_dssp             SSEEEEEEE-TTSCEEEEET-TTEEEEEE----TTTEECEEEEE-TTT-B------TSTTBSEEEEEE-TTCCCC-EEEE
T ss_pred             CCceEEEEe-CCCcEEEEeC-CceEEEEe----CCCcCcceecccccc-c------ccccCCcccceeccccCCCCEEEE
Confidence            589999996 6799999998 89999997    35655 444433110 0      112236789999994    88999


Q ss_pred             EeCCC--------CEEEEEeCCC
Q 029556          120 ADKSN--------HVIRKITNLD  134 (191)
Q Consensus       120 aD~~n--------~rIr~i~~~~  134 (191)
                      +-+..        .+|.++...+
T Consensus        69 ~~t~~~~~~~~~~~~v~r~~~~~   91 (331)
T PF07995_consen   69 YYTNADEDGGDNDNRVVRFTLSD   91 (331)
T ss_dssp             EEEEE-TSSSSEEEEEEEEEEET
T ss_pred             EEEcccCCCCCcceeeEEEeccC
Confidence            86632        4677776544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.64  E-value=2  Score=37.24  Aligned_cols=70  Identities=14%  Similarity=0.188  Sum_probs=45.2

Q ss_pred             CeeeEEEecCCCeEEEEeCCC------CeEEEEecCCCCCceEEEEecCCCcc--CCCCCCccccc-CCCceEEEcCCCC
Q 029556           46 NPHSVIDRPGSSDLIVLDSSR------SAFYTLSFPLSEESVVKRLAGDGVQG--YSDGEPGSARF-DKPKSFAVDMKGN  116 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n------~~I~~~d~~~~~~g~v~~~aG~~~~G--~~DG~~~~a~f-~~P~gIavD~~G~  116 (191)
                      .|++|++ +.++.+||++.+.      ++|++++.    +|++..-.-.+..-  ...+. ...+- ....+||+.++|.
T Consensus        86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~----~G~~~~~~~vP~~~~~~~~~~-~~~~~N~G~E~la~~~dG~  159 (326)
T PF13449_consen   86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDL----DGRVIRRFPVPAAFLPDANGT-SGRRNNRGFEGLAVSPDGR  159 (326)
T ss_pred             ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECC----CCcccceEccccccccccCcc-ccccCCCCeEEEEECCCCC
Confidence            8899999 6999999999999      99999984    56542221111100  00000 01111 2578999999998


Q ss_pred             -EEEEe
Q 029556          117 -IYVAD  121 (191)
Q Consensus       117 -iyVaD  121 (191)
                       +|++-
T Consensus       160 ~l~~~~  165 (326)
T PF13449_consen  160 TLFAAM  165 (326)
T ss_pred             EEEEEE
Confidence             88763

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=94.38  E-value=0.093  Score=37.18  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=27.5

Q ss_pred             ccCCCceEEEcCCC-CEEEEeCCCCEEEEEeCC
Q 029556          102 RFDKPKSFAVDMKG-NIYVADKSNHVIRKITNL  133 (191)
Q Consensus       102 ~f~~P~gIavD~~G-~iyVaD~~n~rIr~i~~~  133 (191)
                      .|..|+||++|+++ .||||+...+.|+.+...
T Consensus        52 g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   52 GFSFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             cCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            37799999999875 599999999999988753

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.36  E-value=0.12  Score=43.63  Aligned_cols=35  Identities=9%  Similarity=0.101  Sum_probs=29.9

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEE
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVK   83 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~   83 (191)
                      ..|.|+++ |.+|+||||-.+.++|+++|+   .+|++.
T Consensus       212 ~~PDGm~I-D~eG~L~Va~~ng~~V~~~dp---~tGK~L  246 (310)
T KOG4499|consen  212 LEPDGMTI-DTEGNLYVATFNGGTVQKVDP---TTGKIL  246 (310)
T ss_pred             CCCCcceE-ccCCcEEEEEecCcEEEEECC---CCCcEE
Confidence            47999999 589999999999999999986   466533

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=93.84  E-value=0.97  Score=38.71  Aligned_cols=83  Identities=16%  Similarity=0.195  Sum_probs=52.6

Q ss_pred             CeeeEEEecCCCeEEEEeCCC------------CeEEEEecCCCCCceEEEEe-cCCCccCCCCCCcccccCCCceEEEc
Q 029556           46 NPHSVIDRPGSSDLIVLDSSR------------SAFYTLSFPLSEESVVKRLA-GDGVQGYSDGEPGSARFDKPKSFAVD  112 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n------------~~I~~~d~~~~~~g~v~~~a-G~~~~G~~DG~~~~a~f~~P~gIavD  112 (191)
                      +.+++.+ |..+.|||.|++.            -++..+|+  ..+..++++. .....       .  .-..-..+++|
T Consensus         2 sV~~v~i-D~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl--~t~~li~~~~~p~~~~-------~--~~s~lndl~VD   69 (287)
T PF03022_consen    2 SVQRVQI-DECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDL--KTNQLIRRYPFPPDIA-------P--PDSFLNDLVVD   69 (287)
T ss_dssp             -EEEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEET--TTTCEEEEEE--CCCS----------TCGGEEEEEEE
T ss_pred             cccEEEE-cCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEEC--CCCcEEEEEECChHHc-------c--cccccceEEEE
Confidence            4678899 5899999999885            48889986  2333444442 11100       0  11234567888


Q ss_pred             CC------CCEEEEeCCCCEEEEEeCCCCCceEE
Q 029556          113 MK------GNIYVADKSNHVIRKITNLDHGNQLI  140 (191)
Q Consensus       113 ~~------G~iyVaD~~n~rIr~i~~~~~~~~~i  140 (191)
                      ..      +.+||+|.++..|.+++..++...++
T Consensus        70 ~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv  103 (287)
T PF03022_consen   70 VRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRV  103 (287)
T ss_dssp             CTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEE
T ss_pred             ccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEE
Confidence            63      46999999999999999977533333

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=93.53  E-value=0.07  Score=31.86  Aligned_cols=20  Identities=45%  Similarity=0.632  Sum_probs=17.3

Q ss_pred             CCceEEEcCCCCEEEEeCCC
Q 029556          105 KPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus       105 ~P~gIavD~~G~iyVaD~~n  124 (191)
                      .|.+|++|++||+||+=..+
T Consensus        14 ~~~~IavD~~GNiYv~G~T~   33 (38)
T PF06739_consen   14 YGNGIAVDSNGNIYVTGYTN   33 (38)
T ss_pred             eEEEEEECCCCCEEEEEeec
Confidence            68999999999999986544

SBBP stands for Seven Bladed Beta Propeller.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.45  E-value=0.65  Score=27.10  Aligned_cols=21  Identities=19%  Similarity=0.333  Sum_probs=18.4

Q ss_pred             cCCCeEEEEeCCCCeEEEEec
Q 029556           54 PGSSDLIVLDSSRSAFYTLSF   74 (191)
Q Consensus        54 d~~g~lyVaD~~n~~I~~~d~   74 (191)
                      |+++.+|+++...+.|..+|.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~   21 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDT   21 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEEC
Confidence            467789999999999999985

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=93.26  E-value=0.37  Score=42.13  Aligned_cols=38  Identities=21%  Similarity=0.108  Sum_probs=31.3

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEec
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAG   87 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG   87 (191)
                      .-|++.-+  .+|.||++|++.+.+.++|.   .+|+...++-
T Consensus       203 smPhSPRW--hdgrLwvldsgtGev~~vD~---~~G~~e~Va~  240 (335)
T TIGR03032       203 SMPHSPRW--YQGKLWLLNSGRGELGYVDP---QAGKFQPVAF  240 (335)
T ss_pred             cCCcCCcE--eCCeEEEEECCCCEEEEEcC---CCCcEEEEEE
Confidence            47888888  58999999999999999985   2487777763

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.95  E-value=0.58  Score=40.53  Aligned_cols=74  Identities=20%  Similarity=0.353  Sum_probs=45.5

Q ss_pred             eeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceE-EEEe-cCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCC
Q 029556           48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLA-GDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (191)
Q Consensus        48 ~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v-~~~a-G~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~  125 (191)
                      .|+.+++.+++++|.--..+++..++.    +|.+ ..+. -.+..|      -....-.|.|||.|++|+|||+-.-| 
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~----~G~~~~~lsL~~g~~g------L~~dipqaEGiamDd~g~lYIvSEPn-  304 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRRLLEVDL----SGEVIELLSLTKGNHG------LSSDIPQAEGIAMDDDGNLYIVSEPN-  304 (316)
T ss_pred             ccceecCCCCcEEEEecCCceEEEEec----CCCeeeeEEeccCCCC------CcccCCCcceeEECCCCCEEEEecCC-
Confidence            345555557778877777788888875    4442 2211 111111      12234579999999999999986544 


Q ss_pred             EEEEEeC
Q 029556          126 VIRKITN  132 (191)
Q Consensus       126 rIr~i~~  132 (191)
                      ...+|.+
T Consensus       305 lfy~F~~  311 (316)
T COG3204         305 LFYRFTP  311 (316)
T ss_pred             cceeccc
Confidence            4455554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=92.93  E-value=4.7  Score=35.59  Aligned_cols=117  Identities=15%  Similarity=0.213  Sum_probs=74.4

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~  123 (191)
                      .+++..-++|++..+++.|-+..||+.++++   +|.+....-...   .+|       ..|.=|++.++|. .|+.-.-
T Consensus       145 ~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~---dg~L~~~~~~~v---~~G-------~GPRHi~FHpn~k~aY~v~EL  211 (346)
T COG2706         145 PHVHSANFTPDGRYLVVPDLGTDRIFLYDLD---DGKLTPADPAEV---KPG-------AGPRHIVFHPNGKYAYLVNEL  211 (346)
T ss_pred             CccceeeeCCCCCEEEEeecCCceEEEEEcc---cCcccccccccc---CCC-------CCcceEEEcCCCcEEEEEecc
Confidence            3467778877777899999999999999873   565443321111   112       2588999999986 8888878


Q ss_pred             CCEEEEEeC--CCCCceEEEEeccCCCceEeccCCCCccEEEEEecCeEEEeeee
Q 029556          124 NHVIRKITN--LDHGNQLIRQINLKPEDCSKSSQSGSGMFWVTVFSPYLISCKSF  176 (191)
Q Consensus       124 n~rIr~i~~--~~~~~~~i~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  176 (191)
                      |++|-.+.-  ..+..+.+..+..-|++.  ....+.+..-+-.-|.|++.|.-.
T Consensus       212 ~stV~v~~y~~~~g~~~~lQ~i~tlP~dF--~g~~~~aaIhis~dGrFLYasNRg  264 (346)
T COG2706         212 NSTVDVLEYNPAVGKFEELQTIDTLPEDF--TGTNWAAAIHISPDGRFLYASNRG  264 (346)
T ss_pred             CCEEEEEEEcCCCceEEEeeeeccCcccc--CCCCceeEEEECCCCCEEEEecCC
Confidence            888876654  334445555555555653  333343344444456666666433

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=92.77  E-value=1.1  Score=40.09  Aligned_cols=77  Identities=14%  Similarity=0.239  Sum_probs=44.3

Q ss_pred             CCeeeEEEe--cCCCeEEE-EeCCCCeEEEEecCCCCCceEEEE-ecCCCccCCCCCCcccccCCCceEEEcCC-CCEEE
Q 029556           45 INPHSVIDR--PGSSDLIV-LDSSRSAFYTLSFPLSEESVVKRL-AGDGVQGYSDGEPGSARFDKPKSFAVDMK-GNIYV  119 (191)
Q Consensus        45 ~~P~gIav~--d~~g~lyV-aD~~n~~I~~~d~~~~~~g~v~~~-aG~~~~G~~DG~~~~a~f~~P~gIavD~~-G~iyV  119 (191)
                      ..|+|+|.-  +.+|.+|+ ....++++..+.+..+.+|.+..- +-.    +       ..-..|.|+++|.+ |.+|+
T Consensus       156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~----f-------~~~sQ~EGCVVDDe~g~LYv  224 (381)
T PF02333_consen  156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVRE----F-------KVGSQPEGCVVDDETGRLYV  224 (381)
T ss_dssp             SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEE----E-------E-SS-EEEEEEETTTTEEEE
T ss_pred             ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEE----e-------cCCCcceEEEEecccCCEEE
Confidence            468999983  44566662 333446676665532334422110 000    0       00126899999987 89999


Q ss_pred             EeCCCCEEEEEeCC
Q 029556          120 ADKSNHVIRKITNL  133 (191)
Q Consensus       120 aD~~n~rIr~i~~~  133 (191)
                      ++. +.-|++++.+
T Consensus       225 gEE-~~GIW~y~Ae  237 (381)
T PF02333_consen  225 GEE-DVGIWRYDAE  237 (381)
T ss_dssp             EET-TTEEEEEESS
T ss_pred             ecC-ccEEEEEecC
Confidence            996 4799999875

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=92.06  E-value=0.95  Score=40.79  Aligned_cols=78  Identities=21%  Similarity=0.241  Sum_probs=53.0

Q ss_pred             CCeeeEEEecCC------CeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEE
Q 029556           45 INPHSVIDRPGS------SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIY  118 (191)
Q Consensus        45 ~~P~gIav~d~~------g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iy  118 (191)
                      ..|-||++.+.+      ++++|+--+...+.+.+    ++|..+.+...-..+  |.      ..+|-++++..+|-+|
T Consensus       314 ~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~----~~g~~~~~~~~fl~~--d~------~gR~~dV~v~~DGall  381 (399)
T COG2133         314 IAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLR----PDGNYKVVLTGFLSG--DL------GGRPRDVAVAPDGALL  381 (399)
T ss_pred             cccceeEEecCCcCccccCcEEEEeecceeEEEec----cCCCcceEEEEEEec--CC------CCcccceEECCCCeEE
Confidence            357899996332      68999988888777765    355533333210000  11      0489999999999999


Q ss_pred             EEeCC-CCEEEEEeCCC
Q 029556          119 VADKS-NHVIRKITNLD  134 (191)
Q Consensus       119 VaD~~-n~rIr~i~~~~  134 (191)
                      ++|-. |.+|.|+..++
T Consensus       382 v~~D~~~g~i~Rv~~~~  398 (399)
T COG2133         382 VLTDQGDGRILRVSYAG  398 (399)
T ss_pred             EeecCCCCeEEEecCCC
Confidence            98766 77999998753

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=91.84  E-value=4.2  Score=35.06  Aligned_cols=93  Identities=14%  Similarity=0.176  Sum_probs=64.5

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCC-CccCCCCCCcccccCCCceEEEc----CCCCEEE
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDG-VQGYSDGEPGSARFDKPKSFAVD----MKGNIYV  119 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~-~~G~~DG~~~~a~f~~P~gIavD----~~G~iyV  119 (191)
                      .+.++|.. +.+|++.|+-+..+.|++++.   .+|++.+..|.. ...+..   ....|...+...+-    .+++|-+
T Consensus       144 ~HiNsV~~-~~~G~yLiS~R~~~~i~~I~~---~tG~I~W~lgG~~~~df~~---~~~~f~~QHdar~~~~~~~~~~Isl  216 (299)
T PF14269_consen  144 FHINSVDK-DDDGDYLISSRNTSTIYKIDP---STGKIIWRLGGKRNSDFTL---PATNFSWQHDARFLNESNDDGTISL  216 (299)
T ss_pred             cEeeeeee-cCCccEEEEecccCEEEEEEC---CCCcEEEEeCCCCCCcccc---cCCcEeeccCCEEeccCCCCCEEEE
Confidence            45577877 478899999999999999995   589999988654 211111   34456666666665    5666777


Q ss_pred             EeC----------CCCEEEEEeCCCCCceEEEEec
Q 029556          120 ADK----------SNHVIRKITNLDHGNQLIRQIN  144 (191)
Q Consensus       120 aD~----------~n~rIr~i~~~~~~~~~i~~i~  144 (191)
                      -|-          ...++..+++++...+.+++..
T Consensus       217 FDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~  251 (299)
T PF14269_consen  217 FDNANSDFNGTEPSRGLVLELDPETMTVTLVREYS  251 (299)
T ss_pred             EcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEee
Confidence            665          4568888888765555555554

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=90.91  E-value=6.2  Score=34.55  Aligned_cols=73  Identities=16%  Similarity=0.207  Sum_probs=49.6

Q ss_pred             CCeeeEEEecCCCeEEEEe-------------CCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEE
Q 029556           45 INPHSVIDRPGSSDLIVLD-------------SSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAV  111 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD-------------~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIav  111 (191)
                      ..|.+|..  -+++|||+=             .+...|-+++    .+|++....-           ....||.|+||++
T Consensus       189 yAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd----~~G~l~~r~a-----------s~g~LNaPWG~a~  251 (336)
T TIGR03118       189 YAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFT----LNGQLLRRVA-----------SSGRLNAPWGLAI  251 (336)
T ss_pred             CCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEc----CCCcEEEEec-----------cCCcccCCceeee
Confidence            45777766  578999863             2223444444    2444332211           1347999999999


Q ss_pred             cC------CCCEEEEeCCCCEEEEEeCCC
Q 029556          112 DM------KGNIYVADKSNHVIRKITNLD  134 (191)
Q Consensus       112 D~------~G~iyVaD~~n~rIr~i~~~~  134 (191)
                      -+      .|.|.|...+.++|..+|+..
T Consensus       252 APa~FG~~sg~lLVGNFGDG~InaFD~~s  280 (336)
T TIGR03118       252 APESFGSLSGALLVGNFGDGTINAYDPQS  280 (336)
T ss_pred             ChhhhCCCCCCeEEeecCCceeEEecCCC
Confidence            65      468999999999999999863

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=89.45  E-value=6.4  Score=33.12  Aligned_cols=73  Identities=15%  Similarity=0.199  Sum_probs=50.7

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n  124 (191)
                      .++-|++++|+++.||..--....|+.++.    +|++.....-  .|          +..|.||++-.+|.+.+++-..
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~----~G~vlr~i~l--~g----------~~D~EgI~y~g~~~~vl~~Er~   85 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL----DGKVLRRIPL--DG----------FGDYEGITYLGNGRYVLSEERD   85 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEET----T--EEEEEE---SS-----------SSEEEEEE-STTEEEEEETTT
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcC----CCCEEEEEeC--CC----------CCCceeEEEECCCEEEEEEcCC
Confidence            569999998778889966666778988874    6664433321  11          3468999999888888899888


Q ss_pred             CEEEEEeCC
Q 029556          125 HVIRKITNL  133 (191)
Q Consensus       125 ~rIr~i~~~  133 (191)
                      +++..++..
T Consensus        86 ~~L~~~~~~   94 (248)
T PF06977_consen   86 QRLYIFTID   94 (248)
T ss_dssp             TEEEEEEE-
T ss_pred             CcEEEEEEe
Confidence            999988873

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=88.66  E-value=2.1  Score=40.70  Aligned_cols=78  Identities=19%  Similarity=0.175  Sum_probs=56.4

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCC---ce---EEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEE
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE---SV---VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIY  118 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~---g~---v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iy  118 (191)
                      .+|+|++++|++..+|++....+.+-.+|.+.-++   ++   ...+++...-|           ..|...++|.+|+.|
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG-----------lGPLHTaFDg~G~ay  389 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG-----------LGPLHTAFDGRGNAY  389 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC-----------CCcceEEECCCCCEE
Confidence            78999999988889999999999999998631110   00   11222221111           268899999999999


Q ss_pred             EEeCCCCEEEEEeCC
Q 029556          119 VADKSNHVIRKITNL  133 (191)
Q Consensus       119 VaD~~n~rIr~i~~~  133 (191)
                      .+=...++|-|.+.+
T Consensus       390 tslf~dsqv~kwn~~  404 (635)
T PRK02888        390 TTLFLDSQIVKWNIE  404 (635)
T ss_pred             EeEeecceeEEEehH
Confidence            998888889999874

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=87.89  E-value=1.1  Score=41.14  Aligned_cols=34  Identities=12%  Similarity=0.265  Sum_probs=30.0

Q ss_pred             ccCCCceEEEcCCCCEEEEeCCCCEEEEEeCCCC
Q 029556          102 RFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDH  135 (191)
Q Consensus       102 ~f~~P~gIavD~~G~iyVaD~~n~rIr~i~~~~~  135 (191)
                      .|..|.+|++.++|++||++...++|+++++.+.
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~   61 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETG   61 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence            3779999999999999999987789999987654

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=87.67  E-value=1.3  Score=26.31  Aligned_cols=20  Identities=5%  Similarity=0.024  Sum_probs=16.4

Q ss_pred             CCeeeEEEecCCCeEEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSS   65 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~   65 (191)
                      ..|++|++ |.+|++||+=.-
T Consensus        13 ~~~~~Iav-D~~GNiYv~G~T   32 (38)
T PF06739_consen   13 DYGNGIAV-DSNGNIYVTGYT   32 (38)
T ss_pred             eeEEEEEE-CCCCCEEEEEee
Confidence            47999999 599999998443

SBBP stands for Seven Bladed Beta Propeller.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=87.17  E-value=21  Score=31.64  Aligned_cols=30  Identities=13%  Similarity=0.175  Sum_probs=25.1

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEec
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSF   74 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~   74 (191)
                      ..|+++++++++..+|++....+.+..+|.
T Consensus        78 ~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~  107 (369)
T PF02239_consen   78 GNPRGIAVSPDGKYVYVANYEPGTVSVIDA  107 (369)
T ss_dssp             SEEEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred             CCcceEEEcCCCCEEEEEecCCCceeEecc
Confidence            579999998777789999999999999984

...

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=86.26  E-value=23  Score=31.21  Aligned_cols=95  Identities=14%  Similarity=0.216  Sum_probs=60.1

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCC--------------C------------CCceEEE--EecCC--CccCC-
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPL--------------S------------EESVVKR--LAGDG--VQGYS-   94 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~--------------~------------~~g~v~~--~aG~~--~~G~~-   94 (191)
                      +-++|++  .++.+++..+.-+|+-.++...              .            .+|+..-  -.+..  ..|++ 
T Consensus       104 diHdia~--~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~  181 (335)
T TIGR03032       104 DAHDLAL--GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWRE  181 (335)
T ss_pred             chhheee--cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCcccccc
Confidence            5677888  4678888888888998887631              0            1333222  22321  13332 


Q ss_pred             ---CCCC---------cccccCCCceEEEcCCCCEEEEeCCCCEEEEEeCCCCCceEEEEe
Q 029556           95 ---DGEP---------GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDHGNQLIRQI  143 (191)
Q Consensus        95 ---DG~~---------~~a~f~~P~gIavD~~G~iyVaD~~n~rIr~i~~~~~~~~~i~~i  143 (191)
                         +|+.         ...-|..|++--+- +|.+|++|++.+++.++|++++..+.+..+
T Consensus       182 ~~~~gG~vidv~s~evl~~GLsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~v  241 (335)
T TIGR03032       182 GRRDGGCVIDIPSGEVVASGLSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFL  241 (335)
T ss_pred             cccCCeEEEEeCCCCEEEcCccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEEC
Confidence               2221         11235667776666 589999999999999999976655555444

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=85.82  E-value=2.9  Score=25.16  Aligned_cols=30  Identities=20%  Similarity=0.231  Sum_probs=23.4

Q ss_pred             CCEEEEeCCCC-EEEEEeCCCCCceEEEEec
Q 029556          115 GNIYVADKSNH-VIRKITNLDHGNQLIRQIN  144 (191)
Q Consensus       115 G~iyVaD~~n~-rIr~i~~~~~~~~~i~~i~  144 (191)
                      |+||.+|...+ +|.+.+..+...+++..-.
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~   31 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISDD   31 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEESS
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECC
Confidence            57999999999 9999999876655554433

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=85.64  E-value=26  Score=33.55  Aligned_cols=31  Identities=13%  Similarity=0.197  Sum_probs=26.8

Q ss_pred             CCCceEEEcCCCC-EEEEeCCCCEEEEEeCCC
Q 029556          104 DKPKSFAVDMKGN-IYVADKSNHVIRKITNLD  134 (191)
Q Consensus       104 ~~P~gIavD~~G~-iyVaD~~n~rIr~i~~~~  134 (191)
                      .+|+|++++++|. +|++-.....+-.||.+.
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k  352 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK  352 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence            5899999999986 889988888899998754

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=85.60  E-value=18  Score=30.82  Aligned_cols=68  Identities=9%  Similarity=0.045  Sum_probs=44.2

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCc-eEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES-VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g-~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~  123 (191)
                      ..-+|+++  -++.||..-..++..+++|.+   +- .+..+.      + +|        ...|+|.|. ..+|++| +
T Consensus        90 ~FgEGit~--~~d~l~qLTWk~~~~f~yd~~---tl~~~~~~~------y-~~--------EGWGLt~dg-~~Li~SD-G  147 (264)
T PF05096_consen   90 YFGEGITI--LGDKLYQLTWKEGTGFVYDPN---TLKKIGTFP------Y-PG--------EGWGLTSDG-KRLIMSD-G  147 (264)
T ss_dssp             --EEEEEE--ETTEEEEEESSSSEEEEEETT---TTEEEEEEE--------SS--------S--EEEECS-SCEEEE--S
T ss_pred             ccceeEEE--ECCEEEEEEecCCeEEEEccc---cceEEEEEe------c-CC--------cceEEEcCC-CEEEEEC-C
Confidence            45689998  478999999999999999852   22 222221      1 01        457999774 4799999 5


Q ss_pred             CCEEEEEeCCC
Q 029556          124 NHVIRKITNLD  134 (191)
Q Consensus       124 n~rIr~i~~~~  134 (191)
                      +.+|+.+||++
T Consensus       148 S~~L~~~dP~~  158 (264)
T PF05096_consen  148 SSRLYFLDPET  158 (264)
T ss_dssp             SSEEEEE-TTT
T ss_pred             ccceEEECCcc
Confidence            78999999954

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=85.59  E-value=8.1  Score=35.43  Aligned_cols=78  Identities=21%  Similarity=0.293  Sum_probs=48.0

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCC-------------CC------CcccccCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSD-------------GE------PGSARFDK  105 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~D-------------G~------~~~a~f~~  105 (191)
                      .|-++|..++.++.|+++-+..+.|.+++.   .++++.+++|... ++..             |.      .....+..
T Consensus       271 ~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~---~t~~i~Wilg~~~-~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~g  346 (477)
T PF05935_consen  271 LHINSIDYDPSDDSIIVSSRHQSAVIKIDY---RTGKIKWILGPPG-GWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWG  346 (477)
T ss_dssp             --EEEEEEETTTTEEEEEETTT-EEEEEE----TTS-EEEEES-ST-T--TTTGGGB-EEB-TTS-B-EBSSSS----SS
T ss_pred             cccCccEEeCCCCeEEEEcCcceEEEEEEC---CCCcEEEEeCCCC-CCCcccchheeeeeccCCceeeccCCCCccccc
Confidence            466889997668999999999999999995   5789999998743 2211             11      12234557


Q ss_pred             CceEEEcCCC---CEEEEeCCCCE
Q 029556          106 PKSFAVDMKG---NIYVADKSNHV  126 (191)
Q Consensus       106 P~gIavD~~G---~iyVaD~~n~r  126 (191)
                      .|...+-++|   +|.+-|-++.|
T Consensus       347 QH~~~~~~~g~~~~l~vFDNg~~r  370 (477)
T PF05935_consen  347 QHTAHLIPDGPQGNLLVFDNGNGR  370 (477)
T ss_dssp             -EEEEE-TTS---SEEEEE--TTG
T ss_pred             ccceEEcCCCCeEEEEEEECCCCC
Confidence            7888888888   99998866554

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]

Probab=85.00  E-value=1.7  Score=39.73  Aligned_cols=36  Identities=22%  Similarity=0.405  Sum_probs=32.0

Q ss_pred             ccccCCCceEEEcCCCCEEEEeCCCCEEEEEeCCCC
Q 029556          100 SARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDH  135 (191)
Q Consensus       100 ~a~f~~P~gIavD~~G~iyVaD~~n~rIr~i~~~~~  135 (191)
                      ..+|.-|+|+.+|++|..|++|...|.+.+..++..
T Consensus       463 ~~~fylphgl~~dkdgf~~~tdvash~v~k~k~~~~  498 (501)
T KOG3567|consen  463 KNLFYLPHGLSIDKDGFYWVTDVASHQVFKLKPNNK  498 (501)
T ss_pred             CCceecCCcceecCCCcEEeecccchhhhhcccccc
Confidence            457999999999999999999999999999887653

>smart00284 OLF Olfactomedin-like domains

Probab=83.09  E-value=11  Score=31.96  Aligned_cols=82  Identities=16%  Similarity=0.124  Sum_probs=45.5

Q ss_pred             eeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC--EEEEeCCCC
Q 029556           48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN--IYVADKSNH  125 (191)
Q Consensus        48 ~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~--iyVaD~~n~  125 (191)
                      .|-.|  -+|.+|.--.+++.|.|+|+   .++.+....--+.+++.+-..-...-..--.+|+|++|-  ||-+...++
T Consensus        77 tG~VV--YngslYY~~~~s~~iiKydL---~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g  151 (255)
T smart00284       77 TGVVV--YNGSLYFNKFNSHDICRFDL---TTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG  151 (255)
T ss_pred             ccEEE--ECceEEEEecCCccEEEEEC---CCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC
Confidence            34455  37899999888999999997   344443222112223221100000011234689999884  666655545


Q ss_pred             EEE--EEeCCC
Q 029556          126 VIR--KITNLD  134 (191)
Q Consensus       126 rIr--~i~~~~  134 (191)
                      .|.  |++|.+
T Consensus       152 ~ivvSkLnp~t  162 (255)
T smart00284      152 KIVISKLNPAT  162 (255)
T ss_pred             CEEEEeeCccc
Confidence            444  888754

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=82.56  E-value=15  Score=31.69  Aligned_cols=29  Identities=21%  Similarity=0.377  Sum_probs=22.4

Q ss_pred             CCceEEEcCC-CCEEEEeCCCCEEEEEeCCC
Q 029556          105 KPKSFAVDMK-GNIYVADKSNHVIRKITNLD  134 (191)
Q Consensus       105 ~P~gIavD~~-G~iyVaD~~n~rIr~i~~~~  134 (191)
                      .-.|+..|.+ |.+||++. +-.|+|+..+-
T Consensus       206 QTEG~VaDdEtG~LYIaeE-dvaiWK~~Aep  235 (364)
T COG4247         206 QTEGMVADDETGFLYIAEE-DVAIWKYEAEP  235 (364)
T ss_pred             cccceeeccccceEEEeec-cceeeecccCC
Confidence            3457777766 99999985 57899998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	191
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	2e-13
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	6e-13
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	1e-12
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	2e-07
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	3e-11
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	3e-11
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	3e-05
3kya_A	496	Putative phosphatase; structural genomics, joint c	2e-10
3kya_A	496	Putative phosphatase; structural genomics, joint c	6e-10
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	9e-08
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	2e-07
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	4e-07
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	8e-07
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	4e-05
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	2e-07
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	1e-06
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	2e-05
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	1e-06
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	6e-06
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	6e-05
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	2e-04
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	3e-04
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	1e-04
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	3e-04
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	3e-04
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	4e-04
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	4e-04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	5e-04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	6e-04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 66.5 bits (162), Expect = 2e-13
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 81  VVKRLAGDGVQ-GYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
            V  +AG        DG P  A F+ P     D +G  ++A+     IRK  
Sbjct: 356 YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 65.4 bits (159), Expect = 6e-13
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 1/104 (0%)

Query: 29  EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGD 88
           E    ++TVI      +   +    PG + + V+   +      +F   +   V  ++G 
Sbjct: 55  EAAERLSTVIGIDNNTLYCLAPRQLPGGNRIKVIVDGKEVTTDGTFKYEQAQNVSTISGS 114

Query: 89  -GVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
               G  DG+  SA+F      A      +    + +  +R I+
Sbjct: 115 ASKDGNDDGDLASAKFKYMWGIAAVGNNTVLAYQRDDPRVRLIS 158

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 64.6 bits (157), Expect = 1e-12
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 54  PGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQ-GYSDGEPGSARFDKPKSFAVD 112
              S+  + D + S+ Y ++     +   +   G   Q    DG    A F +P    VD
Sbjct: 276 FVDSNFYMSDQNLSSVYKITP----DGECEWFCGSATQKTVQDGLREEALFAQPNGMTVD 331

Query: 113 MKGNIYVADK-SNHVIRKIT 131
             GN Y+ D    + +RK+ 
Sbjct: 332 EDGNFYIVDGFKGYCLRKLD 351

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 48.8 bits (116), Expect = 2e-07
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 81  VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
            V  +    + G             P      +  N Y++D++   + KIT
Sbjct: 251 EVTLIKQLELSG------SLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKIT 295

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 60.1 bits (145), Expect = 3e-11
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 81  VVKRLAGDGVQGYS---DGEPG-SARFDKPKSFAVDMKGN-IYVADKSNHVIRKIT 131
            V   AG G  G S   DG+    ARF+ P+    D +    ++ D+ N  IRKI 
Sbjct: 372 RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG 427

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 60.1 bits (145), Expect = 3e-11
 Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 13/114 (11%)

Query: 30  DGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFY--TLSFPLSEESVVKRLAG 87
                T +          H     P  +   ++  ++         +     +    + G
Sbjct: 256 TTQETTPLFTIQDSGWEFHIQFH-PSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCG 314

Query: 88  D-GVQGYSDGEPGSARFDKP---------KSFAVDMKGNIYVADKSNHVIRKIT 131
             G + + DG    AR   P                + + Y  D+ NH IR +T
Sbjct: 315 QQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT 368

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 15/127 (11%)

Query: 12  ITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYT 71
           I+ + +      S ++   G ++  V+     + +    I      ++   +++    Y 
Sbjct: 45  ISKIKVTIGGQDSKVVGAKGKSLYCVVPAKAYDGDIKLSILNDEGEEIANTEANEKFVYQ 104

Query: 72  LSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSF------AVDMKGN--IYVADKS 123
                     V    G    G +  +     FD    F      + D K +  +Y+    
Sbjct: 105 KKML------VTTFLGTMYDGNTKYDLKDGPFDDCGGFGGAVWLSFDPKNHNHLYLVG-E 157

Query: 124 NHVIRKI 130
            H  R I
Sbjct: 158 QHPTRLI 164

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 58.0 bits (139), Expect = 2e-10
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 86  AGDGVQGYSDGEPGSARFDKP--------KSFAVDMKGNIYVADKSNHVIRKIT 131
            G    GY D     AR + P          +  + + + Y  D+ N  +RK+T
Sbjct: 354 GGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT 407

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 56.5 bits (135), Expect = 6e-10
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 11/67 (16%)

Query: 76  LSEESVVKRLAGDGVQ---------GYSDGEPG-SARFDKPKSFAVDMKGN-IYVADKSN 124
           ++ E +V   AG G           G  DG+    ARF        D      YV D+  
Sbjct: 406 VTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVG 465

Query: 125 HVIRKIT 131
           H IR I+
Sbjct: 466 HTIRTIS 472

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 21/100 (21%)

Query: 33  TVTTVIDGHQLEINPHSV-IDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQ 91
           T TTV+  + L   P  + +D  G   + V D +               VV   AG   Q
Sbjct: 56  TGTTVLPFNGLY-QPQGLAVDGAG--TVYVTDFNNR-------------VVTLAAGSNNQ 99

Query: 92  GYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
                       + P+  AVD +G +YVAD+ N+ + K+ 
Sbjct: 100 TVL----PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLA 135

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 20/100 (20%)

Query: 33  TVTTVIDGHQLEINPHSV-IDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQ 91
              TV+    L  +P  V +D  G  ++ V D+  +              V +L  +   
Sbjct: 139 KTQTVLPFTGLN-DPDGVAVDNSG--NVYVTDTDNNR-------------VVKLEAESNN 182

Query: 92  GYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
                         P   AVD  G +YV + + + + K+ 
Sbjct: 183 QVVLP---FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL 219

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 47.6 bits (114), Expect = 4e-07
 Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 18/89 (20%)

Query: 45  INPHSV-IDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARF 103
           ++P  V +D  G  ++ V                    V +LA            G    
Sbjct: 24  LSPSGVAVDSAG--NVYVTSEGMY------------GRVVKLATGSTGTTVLPFNG---L 66

Query: 104 DKPKSFAVDMKGNIYVADKSNHVIRKITN 132
            +P+  AVD  G +YV D +N V+     
Sbjct: 67  YQPQGLAVDGAGTVYVTDFNNRVVTLAAG 95

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 99  GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDH 135
                + P + AVD    +YVAD+ N  + K+T+L+H
Sbjct: 229 PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 86  AGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH-VIRKITN 132
           +G  V  ++    G      P   AVD  GN+YV  +  +  + K+  
Sbjct: 10  SGQTVLPFT----GIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLAT 53

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 88  DGVQGYSDGEPGSA--RFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
             +     GE G    +F +P   AV+ + +I VAD +NH I+   
Sbjct: 12  RMIYHCKFGEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFD 57

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 81  VVKRLAGDGVQGYS-DGEP----GSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
           V +R     +Q Y+  G+     G+     P+   VD KG I V +     +    
Sbjct: 93  VTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFD 148

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 99  GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDHGNQLIRQI 143
            S   + P    V+ K  I+++D   H ++     ++  Q +RQI
Sbjct: 159 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVF---NYEGQYLRQI 200

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 50  VIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSF 109
           +  R     +   +S  S F      L        L  D          G   F  P   
Sbjct: 39  IFHR--GDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGL 96

Query: 110 AVDMKGNIYVADKSNHVIRKIT 131
           ++D  GN +V D + H + K+ 
Sbjct: 97  SIDTDGNYWVTDVALHQVFKLD 118

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 44.4 bits (105), Expect = 6e-06
 Identities = 9/50 (18%), Positives = 16/50 (32%)

Query: 82  VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
              +     +     +P    FD P        G +Y+ D   + + K T
Sbjct: 270 GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 94  SDGEPGSARFDKPKSFAVDM-KGNIYVADKSNHVIRKITNLDHGNQLIRQIN 144
           S   P   +F  P S A+      + VAD+ N  I+         + +R+I 
Sbjct: 186 SGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKT--DTKEFVREIK 235

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 87  GDGVQGYSDGEPGS-ARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
            D         PG      +    A+D K N+ +  + +HV    +
Sbjct: 6   HDFHVEEELDWPGVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNS 51

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 11/89 (12%)

Query: 46  NPHSV-IDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFD 104
            PH + ID  G  +  V D +    + L  P S+E  +  L      G          F 
Sbjct: 92  LPHGLSIDTDG--NYWVTDVALHQVFKLD-PHSKEGPLLILGRSMQPGSDQN-----HFC 143

Query: 105 KPKSFAVDM-KGNIYVADK-SNHVIRKIT 131
           +P   AV+   G ++V+D   N  I + +
Sbjct: 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFS 172

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 6/35 (17%), Positives = 13/35 (37%)

Query: 98  PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITN 132
               +   P    +     ++  +  N+ I +ITN
Sbjct: 140 DLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN 174

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 12/94 (12%)

Query: 39  DGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDG-VQGYSDGE 97
           DG   E +  +    P     I L S  + ++T +    + + + R+   G ++ Y    
Sbjct: 133 DGTIYEYDLPNKGSYPAF---ITLGSDNALWFTEN----QNNSIGRITNTGKLEEYPLPT 185

Query: 98  PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
             +A    P        G ++  +   + I +IT
Sbjct: 186 NAAA----PVGITSGNDGALWFVEIMGNKIGRIT 215

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 5/34 (14%), Positives = 11/34 (32%)

Query: 98  PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
                  +P +        I+  +   + I +IT
Sbjct: 224 DIPTPNARPHAITAGKNSEIWFTEWGANQIGRIT 257

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 6/34 (17%), Positives = 12/34 (35%)

Query: 98  PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
                  K     V   G+I+  +   + I K++
Sbjct: 56  EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLS 89

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 98  PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
           P       P      + G+I+    +   I K+T
Sbjct: 98  PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLT 131

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 82  VKRLAGDG-VQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
           +  +  DG +  Y    P +    K     +   G ++  + + + I +IT
Sbjct: 38  ISCINLDGKITEYPLPTPDA----KVMCLTISSDGEVWFTENAANKIGRIT 84

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 3/34 (8%), Positives = 12/34 (35%)

Query: 98  PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
                  +P +       +++  +   + I ++T
Sbjct: 219 KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLT 252

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 6/34 (17%), Positives = 12/34 (35%)

Query: 98  PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
                   P        G+I+  + + + I +IT
Sbjct: 93  TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRIT 126

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 9/73 (12%)

Query: 60  IVLDSSRSAFYTLSFPLSEESVVKRLAGDG-VQGYSDGEPGSARFDKPKSFAVDMKGNIY 118
           I L S  + ++T +    + + + R+   G +  +    P S     P          ++
Sbjct: 146 ITLGSDNALWFTEN----QNNAIGRITESGDITEFKIPTPASG----PVGITKGNDDALW 197

Query: 119 VADKSNHVIRKIT 131
             +   + I +IT
Sbjct: 198 FVEIIGNKIGRIT 210

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 6/32 (18%), Positives = 13/32 (40%)

Query: 100 SARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
           + +   P    V  KG +++     ++I  I 
Sbjct: 11  TNQDTGPYGITVSDKGKVWITQHKANMISCIN 42

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 5/34 (14%), Positives = 12/34 (35%)

Query: 98  PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
               +   P    +     ++  +  N+ I +IT
Sbjct: 135 ELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT 168

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 23/160 (14%), Positives = 55/160 (34%), Gaps = 35/160 (21%)

Query: 38  IDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTL--SFPLSEESVVKRLAGDGVQ-GYS 94
            D   ++  P S++ +     +I+   + S    L  +    +E +V++   + ++  Y 
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92

Query: 95  -DGEPGSARFDKPKSFAVDMKGNIYVADK---SNHVIRK--ITNLDHGNQLIRQI-NLKP 147
               P      +P   ++  +  I   D+    N V  K  ++ L    +L + +  L+P
Sbjct: 93  FLMSPIKTEQRQP---SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 148 ED---------CSKSS-------------QSGSGMFWVTV 165
                        K+              +    +FW+ +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.66
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.62
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.59
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.55
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.54
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.53
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.44
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.31
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.19
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.13
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.03
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.0
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.98
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.97
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.97
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.97
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.97
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.95
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.95
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.93
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.92
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.91
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.89
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.89
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.88
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.87
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.83
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.83
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.82
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.82
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.8
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.76
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.73
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.73
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.64
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.62
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.61
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.6
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.56
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.55
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.5
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.49
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.49
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.43
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.41
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.37
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.35
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.34
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.33
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.26
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.25
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.22
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.22
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.19
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.11
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.08
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.07
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.06
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.05
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.99
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.99
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.93
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.85
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.83
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.82
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.81
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.8
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.77
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.74
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.72
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.7
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.68
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.49
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.47
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.47
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.46
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.44
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.41
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.37
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.31
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.28
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.22
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.16
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.15
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.14
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.1
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.09
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.09
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.08
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	96.89
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.89
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.87
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.87
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.85
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.75
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	96.73
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.64
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.59
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	96.59
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	96.58
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	96.5
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.45
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.44
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	96.39
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	96.32
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.31
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.14
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	96.13
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	96.08
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	95.97
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	95.94
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	95.92
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	95.9
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	95.85
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.82
2ece_A	462	462AA long hypothetical selenium-binding protein;	95.58
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	95.41
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	95.31
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	95.29
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	95.28
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	95.0
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.59
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.4
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.27
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	94.06
2ece_A	462	462AA long hypothetical selenium-binding protein;	92.65
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	92.24
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.07
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	90.74
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	90.2
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	89.43
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	89.21
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	84.43
3v9f_A	781	Two-component system sensor histidine kinase/RESP	83.79
3v9f_A	781	Two-component system sensor histidine kinase/RESP	83.71
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	83.5
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	82.41
4a2l_A	795	BT_4663, two-component system sensor histidine kin	81.67
3ott_A	758	Two-component system sensor histidine kinase; beta	81.26
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	80.93
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	80.74

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=2.6e-16  Score=142.28  Aligned_cols=89  Identities=27%  Similarity=0.359  Sum_probs=78.2

Q ss_pred             CCCCee-eEEEec------CCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCc---------cCCCC-CCcccccCC
Q 029556           43 LEINPH-SVIDRP------GSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQ---------GYSDG-EPGSARFDK  105 (191)
Q Consensus        43 ~~~~P~-gIav~d------~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~---------G~~DG-~~~~a~f~~  105 (191)
                      .++.|. ++++++      .+++|||||+.||||++++    ++|.+++++|.+..         |+.|| .+.+++|+.
T Consensus       370 ~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~----~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~  445 (496)
T 3kya_A          370 RMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT----PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRD  445 (496)
T ss_dssp             BCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC----TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSS
T ss_pred             ccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe----CCCCEEEEecccccccccCccccccCCCCchhhhhcCC
Confidence            468999 788842      5789999999999999997    58999999998653         67788 568999999


Q ss_pred             CceEEEcCC-CCEEEEeCCCCEEEEEeCCCC
Q 029556          106 PKSFAVDMK-GNIYVADKSNHVIRKITNLDH  135 (191)
Q Consensus       106 P~gIavD~~-G~iyVaD~~n~rIr~i~~~~~  135 (191)
                      |.||++|++ |+|||||+.|||||+|++++.
T Consensus       446 P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          446 VSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             CcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence            999999996 999999999999999999664

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.62  E-value=1.1e-15  Score=135.30  Aligned_cols=87  Identities=31%  Similarity=0.412  Sum_probs=77.9

Q ss_pred             CCCCeeeEEE--------ecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCC---ccCCCC-CCcccccCCCceEE
Q 029556           43 LEINPHSVID--------RPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGV---QGYSDG-EPGSARFDKPKSFA  110 (191)
Q Consensus        43 ~~~~P~gIav--------~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~---~G~~DG-~~~~a~f~~P~gIa  110 (191)
                      .++.|.++++        ++.+++|||+|+.||||++++    ++|.+.+++|.+.   .|+.|| .+..++|++|.||+
T Consensus       333 ~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~----~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~gia  408 (433)
T 4hw6_A          333 RLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT----PEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIA  408 (433)
T ss_dssp             BCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC----TTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEE
T ss_pred             EEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC----CCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEE
Confidence            4678999999        248899999999999999997    5899999999876   677788 66789999999999


Q ss_pred             Ec-CCCCEEEEeCCCCEEEEEeCC
Q 029556          111 VD-MKGNIYVADKSNHVIRKITNL  133 (191)
Q Consensus       111 vD-~~G~iyVaD~~n~rIr~i~~~  133 (191)
                      +| ++|+|||||++|+|||+|+++
T Consensus       409 vd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          409 YDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EECCCCEEEEEeCCCCEEEEEecC
Confidence            99 889999999999999999975

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.59  E-value=2.6e-14  Score=125.10  Aligned_cols=86  Identities=22%  Similarity=0.350  Sum_probs=77.0

Q ss_pred             CCCeeeEEEecCCCeEEEEeC-CCCeEEEEecCCCCCceEEEEecC-CCccCCCCCCcccccCCCceEEEcCCCCEEEEe
Q 029556           44 EINPHSVIDRPGSSDLIVLDS-SRSAFYTLSFPLSEESVVKRLAGD-GVQGYSDGEPGSARFDKPKSFAVDMKGNIYVAD  121 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~-~n~~I~~~d~~~~~~g~v~~~aG~-~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD  121 (191)
                      +..|++|+++ ++|+|||+|+ .+|+|+++++   ++|.+.+++|. +..|+.||.+..++|+.|+||++|++|+|||||
T Consensus       322 ~~~P~gia~d-~dG~lyvad~~~~~~I~~~~~---~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad  397 (409)
T 3hrp_A          322 FAQPNGMTVD-EDGNFYIVDGFKGYCLRKLDI---LDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAE  397 (409)
T ss_dssp             CSSEEEEEEC-TTCCEEEEETTTTCEEEEEET---TTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEE
T ss_pred             eCCCeEEEEe-CCCCEEEEeCCCCCEEEEEEC---CCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEE
Confidence            5789999995 7788999999 9999999985   58999999997 457777887788999999999999999999999


Q ss_pred             CCCCEEEEEeCC
Q 029556          122 KSNHVIRKITNL  133 (191)
Q Consensus       122 ~~n~rIr~i~~~  133 (191)
                      +.|+|||+++++
T Consensus       398 ~~n~~Ir~i~~e  409 (409)
T 3hrp_A          398 AWGKAIRKYAVE  409 (409)
T ss_dssp             STTCEEEEEEEC
T ss_pred             CCCCeEEEEEeC
Confidence            999999999863

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.55  E-value=3.7e-13  Score=117.79  Aligned_cols=95  Identities=24%  Similarity=0.349  Sum_probs=80.5

Q ss_pred             CCee-eEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCC-CccCCCCCCcccccCCCceEEEcCCCCEEEEeC
Q 029556           45 INPH-SVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDG-VQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (191)
Q Consensus        45 ~~P~-gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~-~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~  122 (191)
                      .+|. +++++|.+++||++|..+++|++++.    +|.+.+++|.. ..|+.||....++|+.|.||++|++|+|||||+
T Consensus       266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~----~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~  341 (409)
T 3hrp_A          266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITP----DGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG  341 (409)
T ss_dssp             CSSCCEEEEETTTTEEEEEETTTTEEEEECT----TCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred             CCccccEEEeCCCCEEEEEeCCCCEEEEEec----CCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence            4577 99998658999999999999999984    77788889875 567778866788999999999999999999999


Q ss_pred             -CCCEEEEEeCCCCCceEEEEe
Q 029556          123 -SNHVIRKITNLDHGNQLIRQI  143 (191)
Q Consensus       123 -~n~rIr~i~~~~~~~~~i~~i  143 (191)
                       .|++|+++++.++...++.+.
T Consensus       342 ~~~~~I~~~~~~~G~v~~~~g~  363 (409)
T 3hrp_A          342 FKGYCLRKLDILDGYVSTVAGQ  363 (409)
T ss_dssp             TTTCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCEEEEEECCCCEEEEEeCC
Confidence             999999999656555555553

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.54  E-value=2.1e-14  Score=129.86  Aligned_cols=97  Identities=16%  Similarity=0.157  Sum_probs=78.9

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceE---EEEecC-CCccCCCCCCcccccCCCc-eEEEc-------
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV---KRLAGD-GVQGYSDGEPGSARFDKPK-SFAVD-------  112 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v---~~~aG~-~~~G~~DG~~~~a~f~~P~-gIavD-------  112 (191)
                      ..|++||++|.+..|||+|+.+|+|++++.+.. .+.+   .+++|. +..|+.||.+..++|+.|. ++++|       
T Consensus       310 ~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~-~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~  388 (496)
T 3kya_A          310 SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI-KKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGE  388 (496)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEETT-TTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSS
T ss_pred             CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC-cceecccEEecCCCCCCcccCCcccccccCCCeEEEEEcccccccc
Confidence            468999996444449999999999999886321 2343   688997 6788889988899999999 88998       


Q ss_pred             CCCCEEEEeCCCCEEEEEeCCCCCceEEEEe
Q 029556          113 MKGNIYVADKSNHVIRKITNLDHGNQLIRQI  143 (191)
Q Consensus       113 ~~G~iyVaD~~n~rIr~i~~~~~~~~~i~~i  143 (191)
                      ++|+|||||+.|||||++++.+ ..+++.+-
T Consensus       389 ~~g~lyVaD~~N~rIr~i~~~G-~v~TiaG~  418 (496)
T 3kya_A          389 EEYDFYFVDRLNFCVRKVTPEG-IVSTYAGR  418 (496)
T ss_dssp             CCEEEEEEEGGGTEEEEECTTC-BEEEEEES
T ss_pred             CCCeEEEEECCCCEEEEEeCCC-CEEEEecc
Confidence            6799999999999999999754 56677664

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=1.9e-14  Score=127.09  Aligned_cols=87  Identities=26%  Similarity=0.446  Sum_probs=75.2

Q ss_pred             CCCCee-eEEEe-------cCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCC---ccCCCC-CCcccccCCCceEE
Q 029556           43 LEINPH-SVIDR-------PGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGV---QGYSDG-EPGSARFDKPKSFA  110 (191)
Q Consensus        43 ~~~~P~-gIav~-------d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~---~G~~DG-~~~~a~f~~P~gIa  110 (191)
                      .++.|. +++++       |++++|||+|+.||||++++    ++|++.+++|.+.   .|+.|| .+.+++|+.|.||+
T Consensus       330 ~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~----~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~gia  405 (430)
T 3tc9_A          330 RMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT----PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIV  405 (430)
T ss_dssp             BBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC----TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEE
T ss_pred             EeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC----CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEE
Confidence            367899 89985       25689999999999999997    5899999999853   455677 56789999999999


Q ss_pred             EcC-CCCEEEEeCCCCEEEEEeCC
Q 029556          111 VDM-KGNIYVADKSNHVIRKITNL  133 (191)
Q Consensus       111 vD~-~G~iyVaD~~n~rIr~i~~~  133 (191)
                      +|+ +|+|||||++|+|||+++++
T Consensus       406 vd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          406 YDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EECCCCEEEEEECCCCeEEEEccC
Confidence            998 59999999999999999975

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.44  E-value=3.8e-12  Score=112.56  Aligned_cols=96  Identities=16%  Similarity=0.247  Sum_probs=76.4

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCc---eEEEEecC-CCccCCCCCCcccccCCCceEEE---------
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES---VVKRLAGD-GVQGYSDGEPGSARFDKPKSFAV---------  111 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g---~v~~~aG~-~~~G~~DG~~~~a~f~~P~gIav---------  111 (191)
                      ..|.+|+++++++.|||+|..+|+|++++++.. .+   ...+++|. +..|+.||....++|+.|.||++         
T Consensus       273 ~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~-~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~d  351 (433)
T 4hw6_A          273 GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRE-TGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGE  351 (433)
T ss_dssp             SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTT-TCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTS
T ss_pred             CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCC-CcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccccc
Confidence            356789997444459999999999999986421 23   35688887 66788888778899999999999         


Q ss_pred             cCCCCEEEEeCCCCEEEEEeCCCCCceEEEE
Q 029556          112 DMKGNIYVADKSNHVIRKITNLDHGNQLIRQ  142 (191)
Q Consensus       112 D~~G~iyVaD~~n~rIr~i~~~~~~~~~i~~  142 (191)
                      |++|+|||||+.|+|||++++.+ ...++.+
T Consensus       352 d~~g~lyvaD~~n~~I~~~~~~G-~v~t~~G  381 (433)
T 4hw6_A          352 EDEYDFYFCDRDSHTVRVLTPEG-RVTTYAG  381 (433)
T ss_dssp             SCCEEEEEEETTTTEEEEECTTS-EEEEEEC
T ss_pred             CCCCcEEEEECCCCEEEEECCCC-CEEEEEe
Confidence            99999999999999999999854 3444443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.31  E-value=1.6e-11  Score=108.25  Aligned_cols=96  Identities=17%  Similarity=0.208  Sum_probs=75.2

Q ss_pred             CCeeeEEEecCCCe-EEEEeCCCCeEEEEecCCCCCc---eEEEEecC-CCccCCCCCCcccccCCCc-eEEE-------
Q 029556           45 INPHSVIDRPGSSD-LIVLDSSRSAFYTLSFPLSEES---VVKRLAGD-GVQGYSDGEPGSARFDKPK-SFAV-------  111 (191)
Q Consensus        45 ~~P~gIav~d~~g~-lyVaD~~n~~I~~~d~~~~~~g---~v~~~aG~-~~~G~~DG~~~~a~f~~P~-gIav-------  111 (191)
                      ..|++|+++ ++++ |||+|..+|+|++++.+.. .+   .+.+++|. +..|+.||....++|+.|. ++++       
T Consensus       270 ~~P~gia~~-pdG~~lyv~d~~~~~I~~~~~d~~-~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~  347 (430)
T 3tc9_A          270 GWEFHIQFH-PSGNYAYIVVVNQHYILRSDYDWK-TKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKG  347 (430)
T ss_dssp             SCCEEEEEC-TTSSEEEEEETTTTEEEEEEEETT-TTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTT
T ss_pred             CcceeEEEc-CCCCEEEEEECCCCEEEEEeCCcc-cccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccc
Confidence            469999996 5555 9999999999999986421 12   25678886 5677778877788999999 8999       


Q ss_pred             -cCCCCEEEEeCCCCEEEEEeCCCCCceEEEEe
Q 029556          112 -DMKGNIYVADKSNHVIRKITNLDHGNQLIRQI  143 (191)
Q Consensus       112 -D~~G~iyVaD~~n~rIr~i~~~~~~~~~i~~i  143 (191)
                       |++|+|||||++|+||+++++++ ...++.+.
T Consensus       348 ~D~~g~lyvaD~~n~~I~~i~~~G-~v~~~~g~  379 (430)
T 3tc9_A          348 SSDEYDFYFCDRENHCIRILTPQG-RVTTFAGR  379 (430)
T ss_dssp             SSCCEEEEEEEGGGTEEEEECTTS-EEEEEEEC
T ss_pred             cCCCCeEEEEECCCcEEEEECCCC-cEEEEEeC
Confidence             46799999999999999999754 34444443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.19  E-value=1.8e-10  Score=96.63  Aligned_cols=83  Identities=23%  Similarity=0.318  Sum_probs=66.6

Q ss_pred             CCCeeeEEEecCCCeEEEEeC-CCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCC-CCEEEEe
Q 029556           44 EINPHSVIDRPGSSDLIVLDS-SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK-GNIYVAD  121 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~-~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~-G~iyVaD  121 (191)
                      +..|++|++++.++++||+|+ .+++|++++    ++|+.....+....+   +.+..++|+.|.+|++|++ |++||+|
T Consensus       142 ~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~----~~g~~~~~~~~~g~~---~~~~~~~~~~p~gia~d~~~g~l~v~d  214 (329)
T 3fvz_A          142 FCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS----PSGKFVTQWGEESSG---SSPRPGQFSVPHSLALVPHLDQLCVAD  214 (329)
T ss_dssp             CSSEEEEEECTTTCCEEEEECSSCCEEEEEC----TTSCEEEEECEECCS---SSCCTTEESCEEEEEEETTTTEEEEEE
T ss_pred             cCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc----CCCCEEEEeccCCCC---CCCCCcccCCCcEEEEECCCCEEEEEE
Confidence            458999999644899999997 799999998    477766555432111   1223578999999999998 9999999


Q ss_pred             CCCCEEEEEeCC
Q 029556          122 KSNHVIRKITNL  133 (191)
Q Consensus       122 ~~n~rIr~i~~~  133 (191)
                      ..+++|++++++
T Consensus       215 ~~~~~I~~~~~~  226 (329)
T 3fvz_A          215 RENGRIQCFKTD  226 (329)
T ss_dssp             TTTTEEEEEETT
T ss_pred             CCCCEEEEEECC
Confidence            999999999997

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.13  E-value=1.1e-09  Score=91.70  Aligned_cols=84  Identities=21%  Similarity=0.270  Sum_probs=65.5

Q ss_pred             cCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce---EEEEecCCCccCCCCCCcccccCCCceEEEcC-CCCE
Q 029556           42 QLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV---VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNI  117 (191)
Q Consensus        42 ~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~---v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~-~G~i  117 (191)
                      ..+..|++|+++ ++|++||+|..+++|++++.    +|.   +..+...+..|.     ....++.|.+|++|+ +|++
T Consensus        88 ~~~~~p~gia~d-~~g~l~v~d~~~~~v~~~~~----~g~~~~~~~~~~~~~~g~-----~~~~~~~P~~ia~~~~~g~l  157 (329)
T 3fvz_A           88 NLFYLPHGLSID-TDGNYWVTDVALHQVFKLDP----HSKEGPLLILGRSMQPGS-----DQNHFCQPTDVAVEPSTGAV  157 (329)
T ss_dssp             TTCSSEEEEEEC-TTSCEEEEETTTTEEEEECT----TCSSCCSEEESBTTBCCC-----STTCCSSEEEEEECTTTCCE
T ss_pred             CccCCceEEEEC-CCCCEEEEECCCCEEEEEeC----CCCeEEEEEecccCCCCC-----CccccCCCcEEEEeCCCCeE
Confidence            446799999995 78899999999999999984    443   333332222322     245788999999998 8999


Q ss_pred             EEEeC-CCCEEEEEeCCCC
Q 029556          118 YVADK-SNHVIRKITNLDH  135 (191)
Q Consensus       118 yVaD~-~n~rIr~i~~~~~  135 (191)
                      ||+|. .+++|+++++.+.
T Consensus       158 yv~d~~~~~~I~~~~~~g~  176 (329)
T 3fvz_A          158 FVSDGYCNSRIVQFSPSGK  176 (329)
T ss_dssp             EEEECSSCCEEEEECTTSC
T ss_pred             EEEeCCCCCeEEEEcCCCC
Confidence            99996 8999999998654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.03  E-value=3.6e-09  Score=90.55  Aligned_cols=81  Identities=15%  Similarity=0.229  Sum_probs=63.4

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCC-CeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcC-CCCEEEEe
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSR-SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVAD  121 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n-~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~-~G~iyVaD  121 (191)
                      +..|++|+++|.++.||++|.++ ++|+++++    +|.......            ...+..|.||++|. ++.||++|
T Consensus       158 l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~----dG~~~~~~~------------~~~~~~PnGla~d~~~~~lY~aD  221 (349)
T 3v64_C          158 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSM----DGSGRRIIA------------DTHLFWPNGLTIDYAGRRMYWVD  221 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEECSSSCEEEEEET----TSCSCEESC------------CSSCSCEEEEEEETTTTEEEEEE
T ss_pred             CCCcceEEEecCcCeEEEeccCCCCEEEEEeC----CCCCcEEEE------------ECCCCCcceEEEeCCCCEEEEEE
Confidence            46899999987799999999998 99999985    453222221            12366899999995 68899999


Q ss_pred             CCCCEEEEEeCCCCCceEE
Q 029556          122 KSNHVIRKITNLDHGNQLI  140 (191)
Q Consensus       122 ~~n~rIr~i~~~~~~~~~i  140 (191)
                      +.+++|++++.++...+++
T Consensus       222 ~~~~~I~~~~~dG~~~~~~  240 (349)
T 3v64_C          222 AKHHVIERANLDGSHRKAV  240 (349)
T ss_dssp             TTTTEEEEEETTSCSCEEE
T ss_pred             CCCCEEEEEeCCCCceEEE
Confidence            9999999999976543433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.00  E-value=1.1e-08  Score=85.96  Aligned_cols=82  Identities=16%  Similarity=0.180  Sum_probs=64.2

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCC-CeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcC-CCCEEEEe
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSR-SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVAD  121 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n-~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~-~G~iyVaD  121 (191)
                      ...|++++++|.++.||++|.++ ++|+++++    +|........            ..+..|.||++|. ++.||++|
T Consensus       119 ~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~----dG~~~~~~~~------------~~~~~P~gla~d~~~~~lY~~D  182 (316)
T 1ijq_A          119 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL----NGVDIYSLVT------------ENIQWPNGITLDLLSGRLYWVD  182 (316)
T ss_dssp             TCCEEEEEEETTTTEEEEEECSSSCEEEEEET----TSCCEEEEEC------------SSCSCEEEEEEETTTTEEEEEE
T ss_pred             CCCcceEEeCCCCCEEEEEccCCCCeEEEEcC----CCCCeEEEEE------------CCCCCceEEEEeccCCEEEEEE
Confidence            46899999986799999999986 89999985    5543332221            1467899999996 57899999


Q ss_pred             CCCCEEEEEeCCCCCceEEE
Q 029556          122 KSNHVIRKITNLDHGNQLIR  141 (191)
Q Consensus       122 ~~n~rIr~i~~~~~~~~~i~  141 (191)
                      +.+++|.+++.++...+++.
T Consensus       183 ~~~~~I~~~d~dg~~~~~~~  202 (316)
T 1ijq_A          183 SKLHSISSIDVNGGNRKTIL  202 (316)
T ss_dssp             TTTTEEEEEETTSCSCEEEE
T ss_pred             CCCCeEEEEecCCCceEEEe
Confidence            99999999999765444443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.00  E-value=1.6e-08  Score=85.10  Aligned_cols=91  Identities=18%  Similarity=0.162  Sum_probs=66.5

Q ss_pred             cCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCc-----eEEEEecCCCccCCCCCCccccc
Q 029556           29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES-----VVKRLAGDGVQGYSDGEPGSARF  103 (191)
Q Consensus        29 ~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g-----~v~~~aG~~~~G~~DG~~~~a~f  103 (191)
                      .++..+..++.+   +.+|.++++++.++.||++|..+++|+++++    +|     ....+.             ...+
T Consensus        17 ~~~~~~~~~~~~---~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~----~g~~~~~~~~~~~-------------~~~~   76 (316)
T 1ijq_A           17 LDRSEYTSLIPN---LRNVVALDTEVASNRIYWSDLSQRMICSTQL----DRAHGVSSYDTVI-------------SRDI   76 (316)
T ss_dssp             TTSCCCEEEECS---CSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEE-------------CSSC
T ss_pred             CCCcceEehhcC---CCceEEEEEEeCCCEEEEEECCCCcEEEEEC----CCCCCCcccEEEE-------------eCCC
Confidence            344445555544   3589999997668899999999999999985    33     112222             1235


Q ss_pred             CCCceEEEcC-CCCEEEEeCCCCEEEEEeCCCCCceE
Q 029556          104 DKPKSFAVDM-KGNIYVADKSNHVIRKITNLDHGNQL  139 (191)
Q Consensus       104 ~~P~gIavD~-~G~iyVaD~~n~rIr~i~~~~~~~~~  139 (191)
                      ..|.||++|. .|+||++|..+++|.++++++...++
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~  113 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT  113 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEE
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEE
Confidence            6899999995 68999999999999999987654333

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.98  E-value=3.1e-08  Score=93.93  Aligned_cols=81  Identities=17%  Similarity=0.253  Sum_probs=64.5

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCC-CeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEc-CCCCEEEE
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSR-SAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVD-MKGNIYVA  120 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n-~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD-~~G~iyVa  120 (191)
                      +..|++||+++.++.||++|.++ ++|.++++    +|. ..+++.             ..+..|.||++| .+|.||++
T Consensus       513 l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~----dG~~~~~lv~-------------~~l~~P~GLavD~~~~~LYwa  575 (791)
T 3m0c_C          513 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL----NGVDIYSLVT-------------ENIQWPNGITLDLLSGRLYWV  575 (791)
T ss_dssp             TCCEEEEEEETTTTEEEEEECSSSCEEEEEET----TSCCEEEEEC-------------SSCSCEEEEEEETTTTEEEEE
T ss_pred             CCCcceEEEecCCCCEEEecCCCCCeEEEEec----CCCceEEEEe-------------CCCCCceEEEEecCCCeEEEE
Confidence            45899999987789999999987 89999986    554 333331             246789999999 56899999


Q ss_pred             eCCCCEEEEEeCCCCCceEEE
Q 029556          121 DKSNHVIRKITNLDHGNQLIR  141 (191)
Q Consensus       121 D~~n~rIr~i~~~~~~~~~i~  141 (191)
                      |+.+++|++++..+...+++.
T Consensus       576 D~~~~~I~~~d~dG~~~~~v~  596 (791)
T 3m0c_C          576 DSKLHSISSIDVNGGNRKTIL  596 (791)
T ss_dssp             ETTTTEEEEEETTSCSCEEEE
T ss_pred             eCCCCcEEEEecCCCceEEEe
Confidence            999999999999776555443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.97  E-value=4.7e-09  Score=90.98  Aligned_cols=80  Identities=15%  Similarity=0.218  Sum_probs=63.3

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCC-CeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcC-CCCEEEE
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSR-SAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n-~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~-~G~iyVa  120 (191)
                      +..|++|+++|.++.||++|.++ ++|+++++    +|. ...++.             ..+..|.||++|. ++.||++
T Consensus       201 l~~P~giavdp~~g~ly~td~~~~~~I~r~~~----dG~~~~~~~~-------------~~~~~PnGlavd~~~~~lY~a  263 (386)
T 3v65_B          201 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSM----DGSGRRIIAD-------------THLFWPNGLTIDYAGRRMYWV  263 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEECSSSCEEEEEET----TSCSCEEEEC-------------SSCSCEEEEEEEGGGTEEEEE
T ss_pred             CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC----CCCCcEEEEE-------------CCCCCeeeEEEeCCCCEEEEE
Confidence            46899999987899999999998 99999985    443 223321             1366899999994 6899999


Q ss_pred             eCCCCEEEEEeCCCCCceEE
Q 029556          121 DKSNHVIRKITNLDHGNQLI  140 (191)
Q Consensus       121 D~~n~rIr~i~~~~~~~~~i  140 (191)
                      |+.+++|++++.++....++
T Consensus       264 D~~~~~I~~~d~dG~~~~~~  283 (386)
T 3v65_B          264 DAKHHVIERANLDGSHRKAV  283 (386)
T ss_dssp             ETTTTEEEEECTTSCSCEEE
T ss_pred             ECCCCEEEEEeCCCCeeEEE
Confidence            99999999999876443333

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.97  E-value=2.2e-08  Score=84.94  Aligned_cols=75  Identities=12%  Similarity=0.106  Sum_probs=60.6

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~  122 (191)
                      +..|+||++++.++.||++|+.+++|+++++    +|. .++++.             ..+..|.|+++| ++.+|++|+
T Consensus       165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~----dG~~~~~~~~-------------~~~~~P~glav~-~~~lywtd~  226 (318)
T 3sov_A          165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNL----DGTNRQAVVK-------------GSLPHPFALTLF-EDILYWTDW  226 (318)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEET----TSCSCEEEEC-------------SCCSCEEEEEEE-TTEEEEEET
T ss_pred             CCCccEEEEeccCCEEEEEECCCCEEEEEcC----CCCceEEEec-------------CCCCCceEEEEe-CCEEEEEec
Confidence            4689999998679999999999999999986    332 333331             135689999998 568999999


Q ss_pred             CCCEEEEEeCCCCC
Q 029556          123 SNHVIRKITNLDHG  136 (191)
Q Consensus       123 ~n~rIr~i~~~~~~  136 (191)
                      .+++|.++++.++.
T Consensus       227 ~~~~V~~~~~~~G~  240 (318)
T 3sov_A          227 STHSILACNKYTGE  240 (318)
T ss_dssp             TTTEEEEEETTTCC
T ss_pred             CCCeEEEEECCCCC
Confidence            99999999996543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.97  E-value=2.1e-08  Score=85.70  Aligned_cols=91  Identities=14%  Similarity=0.126  Sum_probs=68.7

Q ss_pred             ecCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCc
Q 029556           28 LEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPK  107 (191)
Q Consensus        28 ~~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~  107 (191)
                      ..+|..++.+..+.   .+|.++++++.++.||++|..+++|++++++   .+....+..             ..+..|.
T Consensus        59 ~~~g~~~~~~~~~~---~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~---g~~~~~~~~-------------~~~~~p~  119 (349)
T 3v64_C           59 LPHRSEYTLLLNNL---ENAIALDFHHRRELVFWSDVTLDRILRANLN---GSNVEEVVS-------------TGLESPG  119 (349)
T ss_dssp             CTTSCCEEEEECSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETT---SCSCEEEEC-------------SSCSCCC
T ss_pred             eCCCCeeEEeecCC---CceEEEEEeccccEEEEEeccCCceEEEecC---CCCceEEEe-------------CCCCCcc
Confidence            34565666665544   4899999977789999999999999999852   222333332             1245799


Q ss_pred             eEEEcC-CCCEEEEeCCCCEEEEEeCCCCCc
Q 029556          108 SFAVDM-KGNIYVADKSNHVIRKITNLDHGN  137 (191)
Q Consensus       108 gIavD~-~G~iyVaD~~n~rIr~i~~~~~~~  137 (191)
                      |+++|. .|+||++|..+++|.++++++...
T Consensus       120 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~  150 (349)
T 3v64_C          120 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  150 (349)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             EEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence            999996 689999999999999999876543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.97  E-value=7.9e-09  Score=87.64  Aligned_cols=80  Identities=15%  Similarity=0.143  Sum_probs=63.2

Q ss_pred             CCCeeeEEEecCCCeEEEEeCC-CCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcC-CCCEEEE
Q 029556           44 EINPHSVIDRPGSSDLIVLDSS-RSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~-n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~-~G~iyVa  120 (191)
                      ...|++|+++|.++.||++|.+ +++|+++++    +|. .+.++.             ..+..|.||++|. ++.||++
T Consensus       121 ~~~P~giavdp~~g~ly~td~~~~~~I~r~~~----dG~~~~~~~~-------------~~l~~Pnglavd~~~~~lY~a  183 (318)
T 3sov_A          121 LDQPRAIALDPSSGFMYWTDWGEVPKIERAGM----DGSSRFIIIN-------------SEIYWPNGLTLDYEEQKLYWA  183 (318)
T ss_dssp             CSSEEEEEEEGGGTEEEEEECSSSCEEEEEET----TSCSCEEEEC-------------SSCSCEEEEEEETTTTEEEEE
T ss_pred             CCCccEEEEeCCCCEEEEEecCCCCEEEEEEc----CCCCeEEEEE-------------CCCCCccEEEEeccCCEEEEE
Confidence            4689999998778999999976 799999985    554 223321             1367899999996 5889999


Q ss_pred             eCCCCEEEEEeCCCCCceEE
Q 029556          121 DKSNHVIRKITNLDHGNQLI  140 (191)
Q Consensus       121 D~~n~rIr~i~~~~~~~~~i  140 (191)
                      |+.+++|++++.++...+++
T Consensus       184 D~~~~~I~~~d~dG~~~~~~  203 (318)
T 3sov_A          184 DAKLNFIHKSNLDGTNRQAV  203 (318)
T ss_dssp             ETTTTEEEEEETTSCSCEEE
T ss_pred             ECCCCEEEEEcCCCCceEEE
Confidence            99999999999976544444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.95  E-value=1.2e-08  Score=89.01  Aligned_cols=81  Identities=17%  Similarity=0.250  Sum_probs=63.3

Q ss_pred             CCCeeeEEEecCCCeEEEEeCC-CCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcC-CCCEEEE
Q 029556           44 EINPHSVIDRPGSSDLIVLDSS-RSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~-n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~-~G~iyVa  120 (191)
                      +..|++|+++|.++.||++|.+ +++|+++++    +|. ...++.             ..+..|.||++|. ++.||++
T Consensus       201 ~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~----dG~~~~~~~~-------------~~l~~P~glavd~~~~~lY~a  263 (400)
T 3p5b_L          201 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL----NGVDIYSLVT-------------ENIQWPNGITLDLLSGRLYWV  263 (400)
T ss_dssp             SCCEEEEEEETTTTEEEEEECSSSCCEEEEET----TSCSCEEEEC-------------SSCSCEEEEEEETTTTEEEEE
T ss_pred             CCCcceEEEecccCeEEEEeCCCCCEEEEEeC----CCCccEEEEE-------------CCCCceEEEEEEeCCCEEEEE
Confidence            4589999998779999999987 589999986    553 223321             2367899999995 5889999


Q ss_pred             eCCCCEEEEEeCCCCCceEEE
Q 029556          121 DKSNHVIRKITNLDHGNQLIR  141 (191)
Q Consensus       121 D~~n~rIr~i~~~~~~~~~i~  141 (191)
                      |+.+++|++++.++...+++.
T Consensus       264 D~~~~~I~~~d~dG~~~~~~~  284 (400)
T 3p5b_L          264 DSKLHSISSIDVNGGNRKTIL  284 (400)
T ss_dssp             ETTTTEEEEEETTSCCCEEEE
T ss_pred             ECCCCEEEEEeCCCCccEEEE
Confidence            999999999999765444443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.95  E-value=2.1e-08  Score=86.86  Aligned_cols=88  Identities=13%  Similarity=0.117  Sum_probs=67.5

Q ss_pred             CCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCc-eEEEEecCCCccCCCCCCcccccCCCce
Q 029556           30 DGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES-VVKRLAGDGVQGYSDGEPGSARFDKPKS  108 (191)
Q Consensus        30 dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g-~v~~~aG~~~~G~~DG~~~~a~f~~P~g  108 (191)
                      ++..+..+.++.   ..|.++++++.++.||++|..+++|+++++    +| ....+...             .+..|.|
T Consensus       104 ~~~~~~~~~~~~---~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~----~g~~~~~~~~~-------------~~~~p~g  163 (386)
T 3v65_B          104 HRSEYTLLLNNL---ENAIALDFHHRRELVFWSDVTLDRILRANL----NGSNVEEVVST-------------GLESPGG  163 (386)
T ss_dssp             TSCCCEEEECSC---SCEEEEEEETTTTEEEEEETTTTEEEEEET----TSCCEEEEECS-------------SCSCCCC
T ss_pred             CCCcEEEEecCC---CccEEEEEecCCCeEEEEeCCCCcEEEEec----CCCCcEEEEeC-------------CCCCccE
Confidence            444455555443   489999997678999999999999999985    33 34444321             2458999


Q ss_pred             EEEcC-CCCEEEEeCCCCEEEEEeCCCCCc
Q 029556          109 FAVDM-KGNIYVADKSNHVIRKITNLDHGN  137 (191)
Q Consensus       109 IavD~-~G~iyVaD~~n~rIr~i~~~~~~~  137 (191)
                      |++|. .|+||++|..+++|+++++++...
T Consensus       164 lavd~~~g~lY~~d~~~~~I~~~~~dg~~~  193 (386)
T 3v65_B          164 LAVDWVHDKLYWTDSGTSRIEVANLDGAHR  193 (386)
T ss_dssp             EEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred             EEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence            99995 689999999999999999876543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.93  E-value=3.4e-08  Score=79.88  Aligned_cols=76  Identities=17%  Similarity=0.292  Sum_probs=60.7

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~  123 (191)
                      ...|++|+++ +++++||+|..+++|++++.    +|......+.           ...+..|.+|++|++|++|+++..
T Consensus       163 ~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~----~g~~~~~~~~-----------~g~~~~p~~i~~d~~G~l~v~~~~  226 (286)
T 1q7f_A          163 LEFPNGVVVN-DKQEIFISDNRAHCVKVFNY----EGQYLRQIGG-----------EGITNYPIGVGINSNGEILIADNH  226 (286)
T ss_dssp             CSSEEEEEEC-SSSEEEEEEGGGTEEEEEET----TCCEEEEESC-----------TTTSCSEEEEEECTTCCEEEEECS
T ss_pred             cCCcEEEEEC-CCCCEEEEECCCCEEEEEcC----CCCEEEEEcc-----------CCccCCCcEEEECCCCCEEEEeCC
Confidence            4579999995 78999999999999999984    5543332221           123568999999999999999998


Q ss_pred             CC-EEEEEeCCCC
Q 029556          124 NH-VIRKITNLDH  135 (191)
Q Consensus       124 n~-rIr~i~~~~~  135 (191)
                      ++ +|+++++.+.
T Consensus       227 ~~~~i~~~~~~g~  239 (286)
T 1q7f_A          227 NNFNLTIFTQDGQ  239 (286)
T ss_dssp             SSCEEEEECTTSC
T ss_pred             CCEEEEEECCCCC
Confidence            86 9999998664

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.92  E-value=2.1e-08  Score=87.37  Aligned_cols=93  Identities=17%  Similarity=0.158  Sum_probs=67.0

Q ss_pred             CCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCC-ceEEEEecCCCccCCCCCCcccccCCCce
Q 029556           30 DGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE-SVVKRLAGDGVQGYSDGEPGSARFDKPKS  108 (191)
Q Consensus        30 dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~-g~v~~~aG~~~~G~~DG~~~~a~f~~P~g  108 (191)
                      ++..++.++.+   ..+|.+|++++.++.||++|..+++|++++++-... +....++.             ..+..|.|
T Consensus       100 ~~~~~~~~~~~---~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-------------~~~~~p~g  163 (400)
T 3p5b_L          100 DRSEYTSLIPN---LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------------RDIQAPDG  163 (400)
T ss_dssp             TSCSCEEEECS---CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC-------------SSCSCEEE
T ss_pred             CCcceeEeccc---cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe-------------CCCCCccc
Confidence            44444555544   359999999767899999999999999998521000 12233332             23568999


Q ss_pred             EEEcC-CCCEEEEeCCCCEEEEEeCCCCCce
Q 029556          109 FAVDM-KGNIYVADKSNHVIRKITNLDHGNQ  138 (191)
Q Consensus       109 IavD~-~G~iyVaD~~n~rIr~i~~~~~~~~  138 (191)
                      ||+|. .|+||++|..+++|+++++++...+
T Consensus       164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~  194 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRK  194 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTTCSEE
T ss_pred             EEEEecCCceEEEECCCCeEEEEeCCCCceE
Confidence            99997 6899999999999999999765443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.91  E-value=9.1e-08  Score=77.41  Aligned_cols=77  Identities=16%  Similarity=0.180  Sum_probs=59.9

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcC-CCCEEEEeC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADK  122 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~-~G~iyVaD~  122 (191)
                      ..|+++++++.++++|++|..+++|.++++    +|. ...+..             ..+..|.++++|+ .|.+|++|.
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~----~g~~~~~~~~-------------~~~~~P~~i~vd~~~g~lyv~~~  141 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKM----DGTQRRVLFD-------------TGLVNPRGIVTDPVRGNLYWTDW  141 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEET----TSCSCEEEEC-------------SSCSSEEEEEEETTTTEEEEEEC
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEc----CCCCEEEEEE-------------CCCCCccEEEEeeCCCEEEEEEC
Confidence            589999997568999999999999999985    332 222321             1246899999998 589999998


Q ss_pred             C--CCEEEEEeCCCCCce
Q 029556          123 S--NHVIRKITNLDHGNQ  138 (191)
Q Consensus       123 ~--n~rIr~i~~~~~~~~  138 (191)
                      .  +++|.++++++...+
T Consensus       142 ~~~~~~I~~~~~dg~~~~  159 (267)
T 1npe_A          142 NRDNPKIETSHMDGTNRR  159 (267)
T ss_dssp             CSSSCEEEEEETTSCCCE
T ss_pred             CCCCcEEEEEecCCCCcE
Confidence            7  789999998654333

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.89  E-value=3.2e-08  Score=81.59  Aligned_cols=106  Identities=11%  Similarity=0.192  Sum_probs=73.3

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceE---EEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEe
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV---KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVAD  121 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v---~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD  121 (191)
                      ..|++++++|++..+|++|+.+++|++++.+. .+|.+   ..+....           .....|.|+++|++|++|+++
T Consensus       149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~-~~G~~~~~~~~~~~~-----------~~~~~p~g~~~d~~G~lwva~  216 (297)
T 3g4e_A          149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDL-QTGQISNRRSVYKLE-----------KEEQIPDGMCIDAEGKLWVAC  216 (297)
T ss_dssp             SBEEEEEECTTSCEEEEEEGGGTEEEEEEECT-TTCCEEEEEEEEECC-----------GGGCEEEEEEEBTTSCEEEEE
T ss_pred             ccccceEEcCCCCEEEEecCCCCcEEEEeccC-CCCcccCcEEEEECC-----------CCCCCCCeeEECCCCCEEEEE
Confidence            47999999866667999999999999998632 34543   2222111           012369999999999999999


Q ss_pred             CCCCEEEEEeCCCCCceEEEEeccC---CCceEeccCCCCccEEEEE
Q 029556          122 KSNHVIRKITNLDHGNQLIRQINLK---PEDCSKSSQSGSGMFWVTV  165 (191)
Q Consensus       122 ~~n~rIr~i~~~~~~~~~i~~i~~~---~~~~~~~~~~g~~~~~~~~  165 (191)
                      +.+++|.+++++++  +.++.+.++   ++.|++.... ...+|+.+
T Consensus       217 ~~~~~v~~~d~~tG--~~~~~i~~p~~~~t~~~f~g~d-~~~L~vt~  260 (297)
T 3g4e_A          217 YNGGRVIRLDPVTG--KRLQTVKLPVDKTTSCCFGGKN-YSEMYVTC  260 (297)
T ss_dssp             ETTTEEEEECTTTC--CEEEEEECSSSBEEEEEEESGG-GCEEEEEE
T ss_pred             cCCCEEEEEcCCCc--eEEEEEECCCCCceEEEEeCCC-CCEEEEEc
Confidence            99999999999743  345555555   3456665222 23555554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.89  E-value=7.2e-08  Score=78.01  Aligned_cols=80  Identities=13%  Similarity=0.059  Sum_probs=62.4

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~  122 (191)
                      ...|+++++++.++.||++|..+++|++++.    ++. ...+..              .+..|.||++| ++.+|++|+
T Consensus       166 ~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~----~g~~~~~~~~--------------~~~~P~gi~~d-~~~lyva~~  226 (267)
T 1npe_A          166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNP----AQPGRRKVLE--------------GLQYPFAVTSY-GKNLYYTDW  226 (267)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEET----TEEEEEEEEE--------------CCCSEEEEEEE-TTEEEEEET
T ss_pred             CCCCcEEEEcCCCCEEEEEECCCCEEEEEec----CCCceEEEec--------------CCCCceEEEEe-CCEEEEEEC
Confidence            3589999997667899999999999999985    443 333321              13479999999 689999999


Q ss_pred             CCCEEEEEeCCCCCceEEEEec
Q 029556          123 SNHVIRKITNLDHGNQLIRQIN  144 (191)
Q Consensus       123 ~n~rIr~i~~~~~~~~~i~~i~  144 (191)
                      .+++|++++++++  +.++.+.
T Consensus       227 ~~~~v~~~d~~~g--~~~~~i~  246 (267)
T 1npe_A          227 KTNSVIAMDLAIS--KEMDTFH  246 (267)
T ss_dssp             TTTEEEEEETTTT--EEEEEEC
T ss_pred             CCCeEEEEeCCCC--CceEEEc
Confidence            9999999999754  3445554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.88  E-value=6e-08  Score=89.40  Aligned_cols=81  Identities=16%  Similarity=0.259  Sum_probs=64.6

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCC-CeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcC-CCCEEEE
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSR-SAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVA  120 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n-~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~-~G~iyVa  120 (191)
                      +..|++|+++|.+|.||++|.++ .+|.+.++    +|. ...++             ...+..|.||++|. ++.||++
T Consensus       434 l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~----dG~~~~~l~-------------~~~l~~P~GlalD~~~~~LY~a  496 (619)
T 3s94_A          434 LEEPRAIVLDPMVGYMYWTDWGEIPKIERAAL----DGSDRVVLV-------------NTSLGWPNGLALDYDEGKIYWG  496 (619)
T ss_dssp             CCSEEEEEEETTTTEEEEEECSSSCEEEEEET----TSCSCEEEE-------------CSSCSCEEEEEEETTTTEEEEE
T ss_pred             CCCeeeEEEEcCCCcEEEecCCCCCEEEEEcc----CCCccEEEE-------------eCCCCCCeeeEEcccCCEEEEE
Confidence            57999999987789999999875 89999986    453 22222             12467999999996 5899999


Q ss_pred             eCCCCEEEEEeCCCCCceEEE
Q 029556          121 DKSNHVIRKITNLDHGNQLIR  141 (191)
Q Consensus       121 D~~n~rIr~i~~~~~~~~~i~  141 (191)
                      |..+++|++++.++...+++.
T Consensus       497 D~~~~~I~~~~~dG~~~~~~~  517 (619)
T 3s94_A          497 DAKTDKIEVMNTDGTGRRVLV  517 (619)
T ss_dssp             ETTTTEEEEEESSSCCCEEEE
T ss_pred             ECCCCEEEEEecCCCceEEEe
Confidence            999999999999776555553

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.87  E-value=8.7e-08  Score=79.53  Aligned_cols=107  Identities=13%  Similarity=0.135  Sum_probs=71.5

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~  123 (191)
                      +..|++|  +++++.+||+|+.+++|++++.+.  +|.+    +..        ..-+.+..|.||++|++|++|||++.
T Consensus       168 ~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~--~g~~----~~~--------~~~~~~~~P~gi~vd~dG~l~va~~~  231 (306)
T 2p4o_A          168 FPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS--TDKP----GEP--------EIFVEQTNIDDFAFDVEGNLYGATHI  231 (306)
T ss_dssp             SCSEEEE--EEETTEEEEEETTTTEEEEEEBCT--TSCB----CCC--------EEEEESCCCSSEEEBTTCCEEEECBT
T ss_pred             CCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC--CCCC----Ccc--------EEEeccCCCCCeEECCCCCEEEEeCC
Confidence            4589999  456789999999999999998631  2321    000        00123468999999999999999999


Q ss_pred             CCEEEEEeCCCCCceEEEEeccC---CCceEeccC-CCCccEEEEEec
Q 029556          124 NHVIRKITNLDHGNQLIRQINLK---PEDCSKSSQ-SGSGMFWVTVFS  167 (191)
Q Consensus       124 n~rIr~i~~~~~~~~~i~~i~~~---~~~~~~~~~-~g~~~~~~~~~~  167 (191)
                      +++|.++++++. ...+.++..+   +..+++... ...+.+|+...+
T Consensus       232 ~~~V~~~~~~G~-~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          232 YNSVVRIAPDRS-TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             TCCEEEECTTCC-EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCeEEEECCCCC-EEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            999999999642 2334455543   455665420 112356666543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.83  E-value=5.9e-08  Score=89.63  Aligned_cols=79  Identities=14%  Similarity=0.151  Sum_probs=62.8

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcC-CCCEEEEeC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADK  122 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~-~G~iyVaD~  122 (191)
                      ..|+|+|++..+++||++|..+++|.++++    +|. .+++..             ..+..|.+|++|+ +|.||++|+
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~----dG~~~~~l~~-------------~~l~~P~~iavdp~~G~lY~tD~  142 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKL----DGQHRQVLVW-------------KDLDSPRALALDPAEGFMYWTEW  142 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEET----TSTTCEEEEC-------------SSCCCEEEEEEETTTTEEEEEEC
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEec----CCCcEEEEEe-------------CCCCCcccEEEccCCCeEEEeCC
Confidence            589999997678999999999999999985    443 223321             2366899999997 699999998


Q ss_pred             C-CCEEEEEeCCCCCceEE
Q 029556          123 S-NHVIRKITNLDHGNQLI  140 (191)
Q Consensus       123 ~-n~rIr~i~~~~~~~~~i  140 (191)
                      + +.+|.++++++...+.+
T Consensus       143 g~~~~I~r~~~dG~~~~~l  161 (628)
T 4a0p_A          143 GGKPKIDRAAMDGSERTTL  161 (628)
T ss_dssp             SSSCEEEEEETTSCSCEEE
T ss_pred             CCCCEEEEEeCCCCceEEE
Confidence            7 88999999977654443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.83  E-value=4.3e-07  Score=73.35  Aligned_cols=76  Identities=17%  Similarity=0.267  Sum_probs=61.4

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~  123 (191)
                      ...|++++++ ++|++||+|..+++|++++.    +|+.....+.           ...+..|.+|++|++|++|++|..
T Consensus       120 ~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~----~g~~~~~~~~-----------~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          120 LQHPRGVTVD-NKGRIIVVECKVMRVIIFDQ----NGNVLHKFGC-----------SKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             CSCEEEEEEC-TTSCEEEEETTTTEEEEECT----TSCEEEEEEC-----------TTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             CCCceEEEEe-CCCCEEEEECCCCEEEEEcC----CCCEEEEeCC-----------CCccCCcEEEEECCCCCEEEEECC
Confidence            4589999995 78899999999999999984    5654443332           123567999999999999999999


Q ss_pred             CCEEEEEeCCCC
Q 029556          124 NHVIRKITNLDH  135 (191)
Q Consensus       124 n~rIr~i~~~~~  135 (191)
                      +++|+++++.+.
T Consensus       184 ~~~i~~~~~~g~  195 (286)
T 1q7f_A          184 AHCVKVFNYEGQ  195 (286)
T ss_dssp             GTEEEEEETTCC
T ss_pred             CCEEEEEcCCCC
Confidence            999999998653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.82  E-value=5e-08  Score=81.19  Aligned_cols=84  Identities=13%  Similarity=0.156  Sum_probs=60.7

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC-
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS-  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~-  123 (191)
                      ..|++|++++++..+||+|+.+++|++++.+-...+....+..               +..|.||++|++|++||++.. 
T Consensus       185 ~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---------------~~gP~gi~~d~~G~l~va~~~~  249 (322)
T 2fp8_A          185 HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---------------IPNPGNIKRNADGHFWVSSSEE  249 (322)
T ss_dssp             SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---------------CSSEEEEEECTTSCEEEEEEEE
T ss_pred             ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---------------CCCCCCeEECCCCCEEEEecCc
Confidence            5899999974445699999999999999863211133333331               112999999999999999976 


Q ss_pred             ---------CCEEEEEeCCCCCceEEEEeccC
Q 029556          124 ---------NHVIRKITNLDHGNQLIRQINLK  146 (191)
Q Consensus       124 ---------n~rIr~i~~~~~~~~~i~~i~~~  146 (191)
                               +++|.++++.+   +.++.+..+
T Consensus       250 ~~~~~~~~~~~~v~~~d~~G---~~~~~~~~~  278 (322)
T 2fp8_A          250 LDGNMHGRVDPKGIKFDEFG---NILEVIPLP  278 (322)
T ss_dssp             TTSSTTSCEEEEEEEECTTS---CEEEEEECC
T ss_pred             ccccccCCCccEEEEECCCC---CEEEEEECC
Confidence                     67899999965   344555443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.82  E-value=8.9e-08  Score=90.79  Aligned_cols=95  Identities=17%  Similarity=0.153  Sum_probs=67.7

Q ss_pred             CCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCC-ceEEEEecCCCccCCCCCCcccccCCCce
Q 029556           30 DGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE-SVVKRLAGDGVQGYSDGEPGSARFDKPKS  108 (191)
Q Consensus        30 dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~-g~v~~~aG~~~~G~~DG~~~~a~f~~P~g  108 (191)
                      ++..+..++.+.   .+|.+|+++..++.||++|..+++|++++++-... +....++.             ..+..|.|
T Consensus       412 ~~~~~~~l~~~~---~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~-------------~~l~~P~G  475 (791)
T 3m0c_C          412 DRSEYTSLIPNL---RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------------RDIQAPDG  475 (791)
T ss_dssp             TSCCCEEEECSC---SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-------------SSCSCCCE
T ss_pred             cCCcceeeecCC---CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe-------------cCCCCcce
Confidence            444555555543   49999999766899999999999999998621000 12233332             24668999


Q ss_pred             EEEcCC-CCEEEEeCCCCEEEEEeCCCCCceEE
Q 029556          109 FAVDMK-GNIYVADKSNHVIRKITNLDHGNQLI  140 (191)
Q Consensus       109 IavD~~-G~iyVaD~~n~rIr~i~~~~~~~~~i  140 (191)
                      ||+|.. ++||++|+.+++|+++++.+...+++
T Consensus       476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l  508 (791)
T 3m0c_C          476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL  508 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEE
T ss_pred             eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEE
Confidence            999976 58999999999999999976544333

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.80  E-value=1.3e-07  Score=87.19  Aligned_cols=78  Identities=14%  Similarity=0.177  Sum_probs=62.2

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcCC-CCEEEEe
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK-GNIYVAD  121 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~-G~iyVaD  121 (191)
                      ...|+|+|+|..+++||++|..+++|.++++    +|. .+++..             ..|+.|.+|++|+. |.||++|
T Consensus       391 ~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~----~G~~~~~l~~-------------~~l~~P~~iavdp~~G~ly~tD  453 (619)
T 3s94_A          391 IAHPDGIAVDWVARNLYWTDTGTDRIEVTRL----NGTMRKILIS-------------EDLEEPRAIVLDPMVGYMYWTD  453 (619)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEET----TSCSCEEEEC-------------TTCCSEEEEEEETTTTEEEEEE
T ss_pred             CCCcCceEEecccCcEEEEeCCCCcEEEEeC----CCCeEEEEEE-------------CCCCCeeeEEEEcCCCcEEEec
Confidence            3689999996568999999999999999985    444 233331             24779999999985 9999999


Q ss_pred             CCC-CEEEEEeCCCCCce
Q 029556          122 KSN-HVIRKITNLDHGNQ  138 (191)
Q Consensus       122 ~~n-~rIr~i~~~~~~~~  138 (191)
                      +++ .+|.++++++...+
T Consensus       454 ~g~~~~I~r~~~dG~~~~  471 (619)
T 3s94_A          454 WGEIPKIERAALDGSDRV  471 (619)
T ss_dssp             CSSSCEEEEEETTSCSCE
T ss_pred             CCCCCEEEEEccCCCccE
Confidence            885 89999998765433

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.76  E-value=3.4e-07  Score=84.53  Aligned_cols=93  Identities=18%  Similarity=0.273  Sum_probs=70.3

Q ss_pred             cCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCC--eEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCC
Q 029556           29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRS--AFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDK  105 (191)
Q Consensus        29 ~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~--~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~  105 (191)
                      .+|-..+++..+  ....|++|+++|.+|.||++|.+++  +|++.++    +|. ...++.             ..+..
T Consensus       418 ~~G~~~~~l~~~--~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~----dG~~~~~l~~-------------~~l~~  478 (628)
T 4a0p_A          418 LDGRSVGVVLKG--EQDRPRAVVVNPEKGYMYFTNLQERSPKIERAAL----DGTEREVLFF-------------SGLSK  478 (628)
T ss_dssp             TTSCEEEEEEEC--TTCCEEEEEEETTTTEEEEEEEETTEEEEEEEET----TSCSCEEEEC-------------SSCSC
T ss_pred             CCCCeEEEEEeC--CCCceeeEEEecCCCeEEEeecCCCCCeEEEEeC----CCCCcEEEEe-------------ccCCC
Confidence            366555555543  2468999999877999999999987  7999986    554 333331             13679


Q ss_pred             CceEEEcCC-CCEEEEeCCCCEEEEEeCCCCCceEE
Q 029556          106 PKSFAVDMK-GNIYVADKSNHVIRKITNLDHGNQLI  140 (191)
Q Consensus       106 P~gIavD~~-G~iyVaD~~n~rIr~i~~~~~~~~~i  140 (191)
                      |.||++|.+ +.||++|..+++|++++.++...+++
T Consensus       479 P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~  514 (628)
T 4a0p_A          479 PIALALDSRLGKLFWADSDLRRIESSDLSGANRIVL  514 (628)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             ccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEE
Confidence            999999986 78999999999999999976544444

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.73  E-value=3.2e-08  Score=85.85  Aligned_cols=104  Identities=13%  Similarity=0.057  Sum_probs=74.6

Q ss_pred             ccCccE-EecCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEE---EEecCCCccCCCC
Q 029556           21 LVSSGL-LLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVK---RLAGDGVQGYSDG   96 (191)
Q Consensus        21 ~~~g~l-~~~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~---~~aG~~~~G~~DG   96 (191)
                      .+.|.+ ++..+ .++.+.++..   .|+||+++|++..+||+|+..++|++++++  .+|++.   .+ ..        
T Consensus       200 ~~~g~vyr~d~~-~~~~~~~~l~---~pNGia~spDg~~lYvadt~~~~I~~~~~~--~~g~l~~~~~~-~~--------  264 (355)
T 3sre_A          200 LAWSFVTYYSPN-DVRVVAEGFD---FANGINISPDGKYVYIAELLAHKIHVYEKH--ANWTLTPLRVL-SF--------  264 (355)
T ss_dssp             CCCEEEEEECTT-CCEEEEEEES---SEEEEEECTTSSEEEEEEGGGTEEEEEEEC--TTSCEEEEEEE-EC--------
T ss_pred             CCccEEEEEECC-eEEEeecCCc---ccCcceECCCCCEEEEEeCCCCeEEEEEEC--CCCcEecCEEE-eC--------
Confidence            356677 44444 6677777665   999999987777999999999999999874  345332   22 11        


Q ss_pred             CCcccccCCCceEEEcC-CCCEEEEe-CCCCEEEEEeCCCCCceEEEEecc
Q 029556           97 EPGSARFDKPKSFAVDM-KGNIYVAD-KSNHVIRKITNLDHGNQLIRQINL  145 (191)
Q Consensus        97 ~~~~a~f~~P~gIavD~-~G~iyVaD-~~n~rIr~i~~~~~~~~~i~~i~~  145 (191)
                            -..|+|+++|+ +|++|+|. ++..+|.+++|+....+.+.+|..
T Consensus       265 ------~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~  309 (355)
T 3sre_A          265 ------DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQD  309 (355)
T ss_dssp             ------SSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEEC
T ss_pred             ------CCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEc
Confidence                  12699999999 59999966 566788888887444456666653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.73  E-value=1.8e-07  Score=74.54  Aligned_cols=74  Identities=22%  Similarity=0.286  Sum_probs=58.5

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n  124 (191)
                      ..|++|+++ ++|++|+++..+++|++++.    ++.......            ...+..|.+|++|++|++|+++..+
T Consensus       150 ~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~----~~~~~~~~~------------~~~~~~p~~i~~d~~g~l~v~~~~~  212 (270)
T 1rwi_B          150 NDPDGVAVD-NSGNVYVTDTDNNRVVKLEA----ESNNQVVLP------------FTDITAPWGIAVDEAGTVYVTEHNT  212 (270)
T ss_dssp             CSCCCEEEC-TTCCEEEEEGGGTEEEEECT----TTCCEEECC------------CSSCCSEEEEEECTTCCEEEEETTT
T ss_pred             CCceeEEEe-CCCCEEEEECCCCEEEEEec----CCCceEeec------------ccCCCCceEEEECCCCCEEEEECCC
Confidence            589999995 77889999999999999985    332111110            1124689999999999999999999


Q ss_pred             CEEEEEeCCCC
Q 029556          125 HVIRKITNLDH  135 (191)
Q Consensus       125 ~rIr~i~~~~~  135 (191)
                      ++|+++++.+.
T Consensus       213 ~~v~~~~~~~~  223 (270)
T 1rwi_B          213 NQVVKLLAGST  223 (270)
T ss_dssp             SCEEEECTTCS
T ss_pred             CcEEEEcCCCC
Confidence            99999999664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.64  E-value=2.7e-07  Score=76.57  Aligned_cols=78  Identities=8%  Similarity=0.065  Sum_probs=59.8

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n  124 (191)
                      ..|++++++ ++++||++|..+++|++++.    ++....+...+              ..|++|++|++|++||+|..+
T Consensus        32 ~~pegia~~-~~g~lyv~d~~~~~I~~~d~----~g~~~~~~~~~--------------~~p~gia~~~dG~l~vad~~~   92 (306)
T 2p4o_A           32 TFLENLASA-PDGTIFVTNHEVGEIVSITP----DGNQQIHATVE--------------GKVSGLAFTSNGDLVATGWNA   92 (306)
T ss_dssp             CCEEEEEEC-TTSCEEEEETTTTEEEEECT----TCCEEEEEECS--------------SEEEEEEECTTSCEEEEEECT
T ss_pred             CCcceEEEC-CCCCEEEEeCCCCeEEEECC----CCceEEEEeCC--------------CCceeEEEcCCCcEEEEeccC
Confidence            589999995 68899999999999999984    55555544321              159999999999999999765


Q ss_pred             C--EEEEEeCCCCCceEEE
Q 029556          125 H--VIRKITNLDHGNQLIR  141 (191)
Q Consensus       125 ~--rIr~i~~~~~~~~~i~  141 (191)
                      +  +|.++++.++..+.+.
T Consensus        93 ~~~~v~~~d~~~g~~~~~~  111 (306)
T 2p4o_A           93 DSIPVVSLVKSDGTVETLL  111 (306)
T ss_dssp             TSCEEEEEECTTSCEEEEE
T ss_pred             CcceEEEEcCCCCeEEEEE
Confidence            4  5888887655444333

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.62  E-value=8.8e-08  Score=89.36  Aligned_cols=81  Identities=16%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCC-CeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCC-CCEEEEe
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSR-SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK-GNIYVAD  121 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n-~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~-G~iyVaD  121 (191)
                      +..|++|+++|.++.||++|.++ ++|+++++    +|.......            ...+..|.||++|++ +.||++|
T Consensus       495 ~~~P~giavDp~~g~ly~td~~~~~~I~~~~~----dG~~~~~l~------------~~~l~~PnGlavd~~~~~LY~aD  558 (699)
T 1n7d_A          495 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL----NGVDIYSLV------------TENIQWPNGITLDLLSGRLYWVD  558 (699)
T ss_dssp             SCCCCCEECCSSSSCCEECCCSSSCCEEBCCS----SSCCCCEES------------CSSCSSCCCEEECTTTCCEEEEE
T ss_pred             CCCcceEEEccCCCcEEEcccCCCCeEEEEeC----CCCCeeEEE------------eCCCCCccEEEEeccCCEEEEEe
Confidence            46899999976789999999876 89999875    443222221            124678999999965 7899999


Q ss_pred             CCCCEEEEEeCCCCCceEE
Q 029556          122 KSNHVIRKITNLDHGNQLI  140 (191)
Q Consensus       122 ~~n~rIr~i~~~~~~~~~i  140 (191)
                      +.+++|++++..+...+++
T Consensus       559 ~~~~~I~~~d~dG~~~~~~  577 (699)
T 1n7d_A          559 SKLHSISSIDVNGGNRKTI  577 (699)
T ss_dssp             TTTTEEEEECSSSSCCEEE
T ss_pred             cCCCeEEEEccCCCceEEE
Confidence            9999999999976443443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.61  E-value=1.1e-06  Score=72.91  Aligned_cols=73  Identities=15%  Similarity=0.015  Sum_probs=58.5

Q ss_pred             CCCeeeEEEecC-CCeEEEEeCCC-----------------CeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCC
Q 029556           44 EINPHSVIDRPG-SSDLIVLDSSR-----------------SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDK  105 (191)
Q Consensus        44 ~~~P~gIav~d~-~g~lyVaD~~n-----------------~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~  105 (191)
                      +..|++++++ + +|++||+|..+                 ++|++++.   .++++..+..              .+..
T Consensus       125 ~~~p~~i~~d-~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~---~~~~~~~~~~--------------~~~~  186 (322)
T 2fp8_A          125 FKWLYAVTVD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP---STKETTLLLK--------------ELHV  186 (322)
T ss_dssp             CSCEEEEEEC-TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET---TTTEEEEEEE--------------EESC
T ss_pred             ccccceEEEe-cCCCEEEEECCcccccccccceehcccCCCceEEEEeC---CCCEEEEecc--------------CCcc
Confidence            4679999995 6 89999999763                 57888874   2455555432              3568


Q ss_pred             CceEEEcCCCC-EEEEeCCCCEEEEEeCCC
Q 029556          106 PKSFAVDMKGN-IYVADKSNHVIRKITNLD  134 (191)
Q Consensus       106 P~gIavD~~G~-iyVaD~~n~rIr~i~~~~  134 (191)
                      |.||+++++|+ +||+|+.+++|++++..+
T Consensus       187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             CCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             CcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            99999999986 999999999999999875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.60  E-value=2.6e-07  Score=73.59  Aligned_cols=73  Identities=22%  Similarity=0.335  Sum_probs=58.1

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n  124 (191)
                      ..|.+|+++ ++|++||++..+++|++++.    ++.......            ...+..|.++++|++|++|++|..+
T Consensus       192 ~~p~~i~~d-~~g~l~v~~~~~~~v~~~~~----~~~~~~~~~------------~~~~~~p~~i~~~~~g~l~v~~~~~  254 (270)
T 1rwi_B          192 TAPWGIAVD-EAGTVYVTEHNTNQVVKLLA----GSTTSTVLP------------FTGLNTPLAVAVDSDRTVYVADRGN  254 (270)
T ss_dssp             CSEEEEEEC-TTCCEEEEETTTSCEEEECT----TCSCCEECC------------CCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred             CCceEEEEC-CCCCEEEEECCCCcEEEEcC----CCCcceeec------------cCCCCCceeEEECCCCCEEEEECCC
Confidence            689999995 77899999999999999984    333222211            1125689999999999999999999


Q ss_pred             CEEEEEeCCC
Q 029556          125 HVIRKITNLD  134 (191)
Q Consensus       125 ~rIr~i~~~~  134 (191)
                      ++|++++...
T Consensus       255 ~~v~~~~~~~  264 (270)
T 1rwi_B          255 DRVVKLTSLE  264 (270)
T ss_dssp             TEEEEECCCG
T ss_pred             CEEEEEcCCC
Confidence            9999998754

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.56  E-value=5.8e-06  Score=67.18  Aligned_cols=99  Identities=14%  Similarity=0.148  Sum_probs=67.6

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceE---EEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEe
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV---KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVAD  121 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v---~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD  121 (191)
                      ..|++++++ ++++++++|+.+++|++++.+  .+|.+   .... ..            ....|.+|++|++|++|+++
T Consensus       172 ~~~~gi~~s-~dg~~lv~~~~~~~i~~~~~~--~~g~~~~~~~~~-~~------------~~~~p~~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          172 VKPNGLAFL-PSGNLLVSDTGDNATHRYCLN--ARGETEYQGVHF-TV------------EPGKTDGLRVDAGGLIWASA  235 (296)
T ss_dssp             SSEEEEEEC-TTSCEEEEETTTTEEEEEEEC--SSSCEEEEEEEE-CC------------SSSCCCSEEEBTTSCEEEEE
T ss_pred             CCCccEEEC-CCCCEEEEeCCCCeEEEEEEC--CCCcCcCCCeEe-eC------------CCCCCCeEEECCCCCEEEEc
Confidence            589999996 556555999999999999863  24554   2222 11            12369999999999999999


Q ss_pred             CCCCEEEEEeCCCCCceEEEEeccC--CCceEeccCCCCccEEEEE
Q 029556          122 KSNHVIRKITNLDHGNQLIRQINLK--PEDCSKSSQSGSGMFWVTV  165 (191)
Q Consensus       122 ~~n~rIr~i~~~~~~~~~i~~i~~~--~~~~~~~~~~g~~~~~~~~  165 (191)
                        +++|+++++++.   .+..+..+  +..+++... .-..+|+.+
T Consensus       236 --~~~v~~~~~~g~---~~~~~~~~~~~~~~~f~~~-d~~~L~v~t  275 (296)
T 3e5z_A          236 --GDGVHVLTPDGD---ELGRVLTPQTTSNLCFGGP-EGRTLYMTV  275 (296)
T ss_dssp             --TTEEEEECTTSC---EEEEEECSSCCCEEEEEST-TSCEEEEEE
T ss_pred             --CCeEEEECCCCC---EEEEEECCCCceeEEEECC-CCCEEEEEc
Confidence              789999999753   44444433  455666422 223466654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.55  E-value=2e-07  Score=86.98  Aligned_cols=76  Identities=21%  Similarity=0.192  Sum_probs=60.8

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCc-eEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES-VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g-~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~  122 (191)
                      +..|+||++++.++.||++|..+++|+++++    +| ..+.++..           ...+.+|.||++|.+ .+|++|+
T Consensus       539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~----dG~~~~~~~~~-----------~~~~~~P~glavd~~-~lywtd~  602 (699)
T 1n7d_A          539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDV----NGGNRKTILED-----------EKRLAHPFSLAVFED-KVFWTDI  602 (699)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEECS----SSSCCEEECCC-----------SSSCSSCCCCEEETT-EEEEECS
T ss_pred             CCCccEEEEeccCCEEEEEecCCCeEEEEcc----CCCceEEEEec-----------CCcCCCceEeEEECC-EEEEEeC
Confidence            4689999997678999999999999999986    33 23333321           134678999999974 8999999


Q ss_pred             CCCEEEEEeCCCC
Q 029556          123 SNHVIRKITNLDH  135 (191)
Q Consensus       123 ~n~rIr~i~~~~~  135 (191)
                      .+++|+++++.++
T Consensus       603 ~~~~V~~~d~~~G  615 (699)
T 1n7d_A          603 INEAIFSANRLTG  615 (699)
T ss_dssp             TTTCEEEEETTTE
T ss_pred             CCCeEEEEEccCC
Confidence            9999999998654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.50  E-value=8.9e-06  Score=64.99  Aligned_cols=73  Identities=10%  Similarity=0.132  Sum_probs=59.6

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~  123 (191)
                      ...|++++++ +++++|+++..+++|++++.    +++...+...            ..+..|.+|++|++|++|+++..
T Consensus       145 ~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~----~g~~~~~~~~------------~~~~~~~~i~~d~~g~l~v~~~~  207 (300)
T 2qc5_A          145 GSYPAFITLG-SDNALWFTENQNNSIGRITN----TGKLEEYPLP------------TNAAAPVGITSGNDGALWFVEIM  207 (300)
T ss_dssp             TCCEEEEEEC-TTSSEEEEETTTTEEEEECT----TCCEEEEECS------------STTCCEEEEEECTTSSEEEEETT
T ss_pred             CCCceeEEEC-CCCCEEEEecCCCeEEEECC----CCcEEEeeCC------------CCCCCcceEEECCCCCEEEEccC
Confidence            4689999995 78889999999999999974    5665554311            12457999999999999999999


Q ss_pred             CCEEEEEeCC
Q 029556          124 NHVIRKITNL  133 (191)
Q Consensus       124 n~rIr~i~~~  133 (191)
                      +++|.++++.
T Consensus       208 ~~~i~~~~~~  217 (300)
T 2qc5_A          208 GNKIGRITTT  217 (300)
T ss_dssp             TTEEEEECTT
T ss_pred             CCEEEEEcCC
Confidence            9999999984

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.49  E-value=8.4e-07  Score=74.68  Aligned_cols=113  Identities=17%  Similarity=0.195  Sum_probs=69.5

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n  124 (191)
                      ..|++|+++|++..||+++...+++++++.+...++..    +..... . ..........|.||++|++|++|++|+.+
T Consensus       195 ~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~----~~~~~~-~-~~~~~g~~g~pdgia~d~~G~l~va~~~~  268 (343)
T 2qe8_A          195 LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL----TDAELG-S-KIERYSEKPICDGISIDKDHNIYVGDLAH  268 (343)
T ss_dssp             CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC----CHHHHH-T-TCEEEEECCSCSCEEECTTCCEEEEEGGG
T ss_pred             cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC----Chhhhh-c-ceEecccCCCCceEEECCCCCEEEEccCC
Confidence            35899999866668999999999999997421111110    000000 0 00000112379999999999999999999


Q ss_pred             CEEEEEeCCCCCceEEEEec-cC-CCceEeccCCCCccEEEEEe
Q 029556          125 HVIRKITNLDHGNQLIRQIN-LK-PEDCSKSSQSGSGMFWVTVF  166 (191)
Q Consensus       125 ~rIr~i~~~~~~~~~i~~i~-~~-~~~~~~~~~~g~~~~~~~~~  166 (191)
                      ++|.+++++++...++.... +. ++++++.+   -+.+|+...
T Consensus       269 ~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~---~g~l~v~~~  309 (343)
T 2qe8_A          269 SAIGVITSADRAYKLLVTDEKLSWTDSFNFGS---DGYLYFDCN  309 (343)
T ss_dssp             TEEEEEETTTTEEEEEEECGGGSCEEEEEECT---TSCEEEEEC
T ss_pred             CeEEEEECCCCCEEEEEECCceecCCeeEECC---CCcEEEEeC
Confidence            99999999443233333322 22 45666643   245776654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.49  E-value=3.7e-06  Score=67.25  Aligned_cols=74  Identities=11%  Similarity=0.179  Sum_probs=60.4

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~  123 (191)
                      ...|.+++++ +++++|+++..+++|.+++.    +|....+...            ..+..|.+|++|++|++|+++..
T Consensus       187 ~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~----~g~~~~~~~~------------~~~~~~~~i~~d~~g~l~v~~~~  249 (300)
T 2qc5_A          187 AAAPVGITSG-NDGALWFVEIMGNKIGRITT----TGEISEYDIP------------TPNARPHAITAGKNSEIWFTEWG  249 (300)
T ss_dssp             TCCEEEEEEC-TTSSEEEEETTTTEEEEECT----TCCEEEEECS------------STTCCEEEEEECSTTCEEEEETT
T ss_pred             CCCcceEEEC-CCCCEEEEccCCCEEEEEcC----CCcEEEEECC------------CCCCCceEEEECCCCCEEEeccC
Confidence            3589999995 78899999999999999974    5665554311            12457999999999999999999


Q ss_pred             CCEEEEEeCCC
Q 029556          124 NHVIRKITNLD  134 (191)
Q Consensus       124 n~rIr~i~~~~  134 (191)
                      +++|.++++.+
T Consensus       250 ~~~i~~~~~~g  260 (300)
T 2qc5_A          250 ANQIGRITNDN  260 (300)
T ss_dssp             TTEEEEECTTS
T ss_pred             CCeEEEECCCC
Confidence            99999999943

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.43  E-value=8.2e-06  Score=67.12  Aligned_cols=104  Identities=20%  Similarity=0.270  Sum_probs=72.4

Q ss_pred             eeeccCccE-Ee-cCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCC
Q 029556           18 LFSLVSSGL-LL-EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSD   95 (191)
Q Consensus        18 ~~~~~~g~l-~~-~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~D   95 (191)
                      ++..+++.+ +. ++| ..+.+...   ...|++++++ .+|++|+++..+++|.+++.    +|+++.++...      
T Consensus        61 ~~d~~~~~i~~~~~~g-~~~~~~~~---~~~~~gl~~d-~dG~l~v~~~~~~~v~~~~~----~g~~~~~~~~~------  125 (305)
T 3dr2_A           61 WSDLVGRRVLGWREDG-TVDVLLDA---TAFTNGNAVD-AQQRLVHCEHGRRAITRSDA----DGQAHLLVGRY------  125 (305)
T ss_dssp             EEETTTTEEEEEETTS-CEEEEEES---CSCEEEEEEC-TTSCEEEEETTTTEEEEECT----TSCEEEEECEE------
T ss_pred             EEECCCCEEEEEeCCC-CEEEEeCC---CCccceeeEC-CCCCEEEEECCCCEEEEECC----CCCEEEEEecc------
Confidence            345555555 22 344 34444332   2479999995 78999999999999999984    57777665321      


Q ss_pred             CCCcccccCCCceEEEcCCCCEEEEeC-----------------CCCEEEEEeCCCCCceE
Q 029556           96 GEPGSARFDKPKSFAVDMKGNIYVADK-----------------SNHVIRKITNLDHGNQL  139 (191)
Q Consensus        96 G~~~~a~f~~P~gIavD~~G~iyVaD~-----------------~n~rIr~i~~~~~~~~~  139 (191)
                         ....++.|.++++|++|++|++|.                 ....|.++++.++..+.
T Consensus       126 ---~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~  183 (305)
T 3dr2_A          126 ---AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR  183 (305)
T ss_dssp             ---TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred             ---CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence               123578899999999999999974                 23689999986554433

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.41  E-value=3.4e-06  Score=72.10  Aligned_cols=88  Identities=14%  Similarity=0.218  Sum_probs=67.3

Q ss_pred             cCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCce
Q 029556           29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKS  108 (191)
Q Consensus        29 ~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~g  108 (191)
                      .+.+.+++++++..   .|.+|+++ ++|++||+|.. ++|++++     +|+...+++...  .      ...+..|.|
T Consensus        18 ~~~~~~~~va~~l~---~P~~ia~~-pdG~l~V~e~~-g~I~~i~-----~g~~~~~~~~~v--~------~~g~~~p~g   79 (352)
T 2ism_A           18 GQGLRVEEVVGGLE---VPWALAFL-PDGGMLIAERP-GRIRLFR-----EGRLSTYAELSV--Y------HRGESGLLG   79 (352)
T ss_dssp             --CCCEEEEECCCS---CEEEEEEC-TTSCEEEEETT-TEEEEEE-----TTEEEEEEECCC--C------CSTTCSEEE
T ss_pred             cCCcEEEEEECCCC---CceEEEEc-CCCeEEEEeCC-CeEEEEE-----CCCccEeecceE--e------ecCCCCcee
Confidence            46789999998755   99999995 78899999987 8999997     466666554321  1      112457999


Q ss_pred             EEEcCC----CCEEEEeCCC-----CEEEEEeCCC
Q 029556          109 FAVDMK----GNIYVADKSN-----HVIRKITNLD  134 (191)
Q Consensus       109 IavD~~----G~iyVaD~~n-----~rIr~i~~~~  134 (191)
                      |+++++    |.+|+++..+     ++|.+++..+
T Consensus        80 ia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~  114 (352)
T 2ism_A           80 LALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLG  114 (352)
T ss_dssp             EEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECS
T ss_pred             EEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCC
Confidence            999997    8999999865     7999999864

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.37  E-value=2.8e-06  Score=72.85  Aligned_cols=92  Identities=13%  Similarity=0.081  Sum_probs=68.8

Q ss_pred             EEecCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCC
Q 029556           26 LLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDK  105 (191)
Q Consensus        26 l~~~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~  105 (191)
                      ...++++.+++++++..   .|.+|+++ ++|+|||+|.. ++|++++    ++|. +.+.+...  ..      .....
T Consensus        13 ~~~~~~~~~~~va~~l~---~P~~ia~~-pdG~l~V~e~~-g~I~~~d----~~G~-~~~~~~~v--~~------~g~~g   74 (354)
T 3a9g_A           13 PSEEWKFKISEVASDLE---VPWSIAPL-GGGRYLVTERP-GRLVLIS----PSGK-KLVASFDV--AN------VGEAG   74 (354)
T ss_dssp             ---CCCEEEEEEECSCS---CEEEEEEE-ETTEEEEEETT-TEEEEEC----SSCE-EEEEECCC--CC------STTCS
T ss_pred             CCCCCCeEEEEEeCCCC---CCeEEEEc-CCCeEEEEeCC-CEEEEEe----CCCc-eEeeccce--ee------cCCCc
Confidence            45568999999998755   99999996 68899999987 8999996    4676 55554321  01      12347


Q ss_pred             CceEEEcCC----CCEEEEeCC---C----CEEEEEeCCCC
Q 029556          106 PKSFAVDMK----GNIYVADKS---N----HVIRKITNLDH  135 (191)
Q Consensus       106 P~gIavD~~----G~iyVaD~~---n----~rIr~i~~~~~  135 (191)
                      |.||+++++    |.|||++..   +    ++|.+++..+.
T Consensus        75 ~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~  115 (354)
T 3a9g_A           75 LLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGS  115 (354)
T ss_dssp             EEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSS
T ss_pred             eeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCC
Confidence            999999986    899999874   4    78999997654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.35  E-value=5.4e-06  Score=67.35  Aligned_cols=90  Identities=11%  Similarity=0.147  Sum_probs=69.0

Q ss_pred             EecCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCC
Q 029556           27 LLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP  106 (191)
Q Consensus        27 ~~~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P  106 (191)
                      .+.++..++.+.++..   .|+++++++.++.+|+++..+++|++++.   ..+ ...+...              ...|
T Consensus        13 ~~~~~~~~~~l~~~~~---~~eg~~~d~~g~~l~~~~~~~~~i~~~~~---~~~-~~~~~~~--------------~~~~   71 (296)
T 3e5z_A           13 LFPAGAEARRLADGFT---WTEGPVYVPARSAVIFSDVRQNRTWAWSD---DGQ-LSPEMHP--------------SHHQ   71 (296)
T ss_dssp             GSCTTCCCEEEECCCS---SEEEEEEEGGGTEEEEEEGGGTEEEEEET---TSC-EEEEESS--------------CSSE
T ss_pred             hcCCCCcEEEEecCCc---cccCCeEeCCCCEEEEEeCCCCEEEEEEC---CCC-eEEEECC--------------CCCc
Confidence            3456667788877655   89999997444449999999999999985   233 5554421              1368


Q ss_pred             ceEEEcCCCCEEEEeCCCCEEEEEeCCCCCc
Q 029556          107 KSFAVDMKGNIYVADKSNHVIRKITNLDHGN  137 (191)
Q Consensus       107 ~gIavD~~G~iyVaD~~n~rIr~i~~~~~~~  137 (191)
                      .++++|++|++|+++.++++|.++++.++..
T Consensus        72 ~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~  102 (296)
T 3e5z_A           72 NGHCLNKQGHLIACSHGLRRLERQREPGGEW  102 (296)
T ss_dssp             EEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred             ceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence            9999999999999999999999999955433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.34  E-value=7e-05  Score=59.64  Aligned_cols=72  Identities=10%  Similarity=0.107  Sum_probs=59.2

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~  123 (191)
                      ...|++++++ +++++|+++..++.|++++.    ++++..+...            ..+..|.++++|++|++|+++..
T Consensus       140 ~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~----~g~~~~~~~~------------~~~~~~~~i~~~~~g~l~v~~~~  202 (299)
T 2z2n_A          140 GSYPSFITLG-SDNALWFTENQNNAIGRITE----SGDITEFKIP------------TPASGPVGITKGNDDALWFVEII  202 (299)
T ss_dssp             TCCEEEEEEC-TTSCEEEEETTTTEEEEECT----TCCEEEEECS------------STTCCEEEEEECTTSSEEEEETT
T ss_pred             CCCCceEEEc-CCCCEEEEeCCCCEEEEEcC----CCcEEEeeCC------------CCCCcceeEEECCCCCEEEEccC
Confidence            3579999995 78899999999999999973    5666554321            12457999999999999999999


Q ss_pred             CCEEEEEeC
Q 029556          124 NHVIRKITN  132 (191)
Q Consensus       124 n~rIr~i~~  132 (191)
                      +++|.++++
T Consensus       203 ~~~i~~~~~  211 (299)
T 2z2n_A          203 GNKIGRITT  211 (299)
T ss_dssp             TTEEEEECT
T ss_pred             CceEEEECC
Confidence            999999999

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.33  E-value=1.4e-05  Score=63.74  Aligned_cols=73  Identities=7%  Similarity=0.136  Sum_probs=59.3

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~  123 (191)
                      ...|.+++++ +++++|+++..+++|++++.    ++.+..+...            .....|.+|++|++|++|+++..
T Consensus       182 ~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~----~g~~~~~~~~------------~~~~~~~~i~~~~~g~l~v~~~~  244 (299)
T 2z2n_A          182 ASGPVGITKG-NDDALWFVEIIGNKIGRITT----SGEITEFKIP------------TPNARPHAITAGAGIDLWFTEWG  244 (299)
T ss_dssp             TCCEEEEEEC-TTSSEEEEETTTTEEEEECT----TCCEEEEECS------------STTCCEEEEEECSTTCEEEEETT
T ss_pred             CCcceeEEEC-CCCCEEEEccCCceEEEECC----CCcEEEEECC------------CCCCCceeEEECCCCCEEEeccC
Confidence            3579999995 77899999999999999984    5655544211            12457999999999999999999


Q ss_pred             CCEEEEEeCC
Q 029556          124 NHVIRKITNL  133 (191)
Q Consensus       124 n~rIr~i~~~  133 (191)
                      +++|.++++.
T Consensus       245 ~~~i~~~d~~  254 (299)
T 2z2n_A          245 ANKIGRLTSN  254 (299)
T ss_dssp             TTEEEEEETT
T ss_pred             CceEEEECCC
Confidence            9999999994

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.26  E-value=1.6e-05  Score=66.46  Aligned_cols=87  Identities=10%  Similarity=0.121  Sum_probs=61.5

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCc-eE---EEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEE
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES-VV---KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVA  120 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g-~v---~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVa  120 (191)
                      ..|+++++++++..+|++|+.+++|++++.+. .+| .+   ..+....           .....|.++++|++|++|++
T Consensus       179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~-~~Gl~~~~~~~~~~~~-----------~~~~~p~gi~~d~~G~lwva  246 (326)
T 2ghs_A          179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA-RTGLPTGKAEVFIDST-----------GIKGGMDGSVCDAEGHIWNA  246 (326)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCT-TTCCBSSCCEEEEECT-----------TSSSEEEEEEECTTSCEEEE
T ss_pred             cccCCeEEcCCCCEEEEEECCCCEEEEEEccc-ccCCcccCceEEEECC-----------CCCCCCCeeEECCCCCEEEE
Confidence            37999999755557999999999999998631 134 21   1222110           01135899999999999999


Q ss_pred             eCCCCEEEEEeCCCCCceEEEEeccC
Q 029556          121 DKSNHVIRKITNLDHGNQLIRQINLK  146 (191)
Q Consensus       121 D~~n~rIr~i~~~~~~~~~i~~i~~~  146 (191)
                      .+++++|.++++.+   +.++.+.++
T Consensus       247 ~~~~~~v~~~d~~g---~~~~~i~~~  269 (326)
T 2ghs_A          247 RWGEGAVDRYDTDG---NHIARYEVP  269 (326)
T ss_dssp             EETTTEEEEECTTC---CEEEEEECS
T ss_pred             EeCCCEEEEECCCC---CEEEEEECC
Confidence            99889999999954   345555554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.25  E-value=8.1e-05  Score=62.10  Aligned_cols=105  Identities=10%  Similarity=0.083  Sum_probs=70.7

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC-
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS-  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~-  123 (191)
                      ..|++++++ +++.+||++..+++|.++|.   .++++......+.        ...+...|.+|++ .++.+|+++++ 
T Consensus        84 ~~p~~i~~~-~~g~lyv~~~~~~~v~~iD~---~t~~~~~~i~~g~--------~~~~~~~p~~i~~-~~~~lyv~~~~~  150 (328)
T 3dsm_A           84 TSPRYIHFL-SDEKAYVTQIWDYRIFIINP---KTYEITGYIECPD--------MDMESGSTEQMVQ-YGKYVYVNCWSY  150 (328)
T ss_dssp             SSEEEEEEE-ETTEEEEEEBSCSEEEEEET---TTTEEEEEEECTT--------CCTTTCBCCCEEE-ETTEEEEEECTT
T ss_pred             CCCcEEEEe-CCCeEEEEECCCCeEEEEEC---CCCeEEEEEEcCC--------ccccCCCcceEEE-ECCEEEEEcCCC
Confidence            589999996 45699999988899999996   4566543332211        1234568999999 47899999985 


Q ss_pred             CCEEEEEeCCCCCceEEEEeccC--CCceEeccCCCCccEEEEEec
Q 029556          124 NHVIRKITNLDHGNQLIRQINLK--PEDCSKSSQSGSGMFWVTVFS  167 (191)
Q Consensus       124 n~rIr~i~~~~~~~~~i~~i~~~--~~~~~~~~~~g~~~~~~~~~~  167 (191)
                      +++|.+++++++  +.++.+...  +.+....+   -|.+|+...+
T Consensus       151 ~~~v~viD~~t~--~~~~~i~~g~~p~~i~~~~---dG~l~v~~~~  191 (328)
T 3dsm_A          151 QNRILKIDTETD--KVVDELTIGIQPTSLVMDK---YNKMWTITDG  191 (328)
T ss_dssp             CCEEEEEETTTT--EEEEEEECSSCBCCCEECT---TSEEEEEBCC
T ss_pred             CCEEEEEECCCC--eEEEEEEcCCCccceEEcC---CCCEEEEECC
Confidence            889999999765  344444433  33444322   2346665544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.22  E-value=2.1e-05  Score=64.70  Aligned_cols=84  Identities=12%  Similarity=0.024  Sum_probs=67.2

Q ss_pred             CCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceE
Q 029556           30 DGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSF  109 (191)
Q Consensus        30 dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gI  109 (191)
                      .+..++++.+|..   .|++++++++++.||++|..+++|++++.    +|....+...              -..|.++
T Consensus        33 ~~~~~~~l~~~~~---~~egp~~~~~g~~l~~~d~~~~~i~~~~~----~g~~~~~~~~--------------~~~~~gl   91 (305)
T 3dr2_A           33 GDARLLTLYDQAT---WSEGPAWWEAQRTLVWSDLVGRRVLGWRE----DGTVDVLLDA--------------TAFTNGN   91 (305)
T ss_dssp             TTCCCEEEECCCS---SEEEEEEEGGGTEEEEEETTTTEEEEEET----TSCEEEEEES--------------CSCEEEE
T ss_pred             CCCceEEEecCCc---CccCCeEeCCCCEEEEEECCCCEEEEEeC----CCCEEEEeCC--------------CCcccee
Confidence            3457788887765   89999997555569999999999999974    5666555421              1258999


Q ss_pred             EEcCCCCEEEEeCCCCEEEEEeCCC
Q 029556          110 AVDMKGNIYVADKSNHVIRKITNLD  134 (191)
Q Consensus       110 avD~~G~iyVaD~~n~rIr~i~~~~  134 (191)
                      ++|++|++|+++.++++|.++++++
T Consensus        92 ~~d~dG~l~v~~~~~~~v~~~~~~g  116 (305)
T 3dr2_A           92 AVDAQQRLVHCEHGRRAITRSDADG  116 (305)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTS
T ss_pred             eECCCCCEEEEECCCCEEEEECCCC
Confidence            9999999999999999999999863

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.22  E-value=2.1e-05  Score=66.02  Aligned_cols=82  Identities=11%  Similarity=0.076  Sum_probs=60.6

Q ss_pred             CCCCeeeEEEecCCCeEEEEeCC-----CCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcC-CCC
Q 029556           43 LEINPHSVIDRPGSSDLIVLDSS-----RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGN  116 (191)
Q Consensus        43 ~~~~P~gIav~d~~g~lyVaD~~-----n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~-~G~  116 (191)
                      .+..|++|+++ ++++|||+|.+     .++|.++|+   .+|++......+...       ......|.++++|+ .|.
T Consensus        65 ~~~~p~gv~~d-~~g~L~v~D~g~~~~~~~~i~~~d~---~tg~~~~~~~~~~~~-------~~~~~~~~~v~vd~~~g~  133 (343)
T 2qe8_A           65 TFDTVLGIKSD-GNGIVWMLDNGNQSKSVPKLVAWDT---LNNQLSRVIYLPPPI-------TLSNSFVNDLAVDLIHNF  133 (343)
T ss_dssp             CCSCEEEEEEC-SSSEEEEEECHHHHTSCCEEEEEET---TTTEEEEEEECCTTT-------SCTTCCCCEEEEETTTTE
T ss_pred             ceeEeeEEEEc-CCCcEEEEcCCCCcCCCCeEEEEEC---CCCeEEEEEECChhh-------cccccccceEEEecCCCE
Confidence            35799999995 77999999988     589999986   357643333221100       11235789999996 479


Q ss_pred             EEEEeC---CCCEEEEEeCCCC
Q 029556          117 IYVADK---SNHVIRKITNLDH  135 (191)
Q Consensus       117 iyVaD~---~n~rIr~i~~~~~  135 (191)
                      +|++|.   .++.|.++++.++
T Consensus       134 ~yvtd~~~~~~~~i~v~d~~~g  155 (343)
T 2qe8_A          134 VYISDPAPDDKAALIRVDLQTG  155 (343)
T ss_dssp             EEEEECCSGGGCEEEEEETTTC
T ss_pred             EEEEcCccCCCCeEEEEECCCC
Confidence            999999   8899999998654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.19  E-value=3e-05  Score=62.64  Aligned_cols=77  Identities=14%  Similarity=0.168  Sum_probs=57.3

Q ss_pred             CCeeeEEEe----cCCCeEEEEeCCCCeEEEEecCCCCCceEE---EEecCCCccCCCCCCcccccCCCceEEEcCCCCE
Q 029556           45 INPHSVIDR----PGSSDLIVLDSSRSAFYTLSFPLSEESVVK---RLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNI  117 (191)
Q Consensus        45 ~~P~gIav~----d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~---~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~i  117 (191)
                      ..|++++++    +++..+|+++..+++|++++.+  .+|.+.   .+....      +    ..+..|.++++|++|++
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~--~~g~~~~~~~~~~~~------~----~~~~~p~~i~~d~~G~l  239 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK--GPAKIENKKVWGHIP------G----THEGGADGMDFDEDNNL  239 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE--ETTEEEEEEEEEECC------C----CSSCEEEEEEEBTTCCE
T ss_pred             CCcceEEEecccCCCCCEEEEEECCCCeEEEEECC--CCCccccceEEEECC------C----CCCCCCCceEECCCCCE
Confidence            479999996    5555799999999999999852  134322   222111      0    01246899999999999


Q ss_pred             EEEeCCCCEEEEEeCC
Q 029556          118 YVADKSNHVIRKITNL  133 (191)
Q Consensus       118 yVaD~~n~rIr~i~~~  133 (191)
                      |+++..+++|.++++.
T Consensus       240 ~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          240 LVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEETTTEEEEECTT
T ss_pred             EEEEcCCCEEEEEcCC
Confidence            9999989999999997

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.11  E-value=2.9e-05  Score=66.76  Aligned_cols=120  Identities=20%  Similarity=0.150  Sum_probs=77.7

Q ss_pred             eeeeeeeccCccE--EecC-CcEEEEEEcCcc----CCCCeeeEEEe--cCCCeEEE-EeC------------CCCeEEE
Q 029556           14 LLSLLFSLVSSGL--LLED-GYTVTTVIDGHQ----LEINPHSVIDR--PGSSDLIV-LDS------------SRSAFYT   71 (191)
Q Consensus        14 ~~~~~~~~~~g~l--~~~d-Gy~~~~~~~G~~----~~~~P~gIav~--d~~g~lyV-aD~------------~n~~I~~   71 (191)
                      +.|++.++-++.+  .-++ +.......++..    -..+|.||.++  |+.+.|+| +|.            +.+.+.+
T Consensus        25 g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~  104 (334)
T 2p9w_A           25 QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHS  104 (334)
T ss_dssp             TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEE
T ss_pred             CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEE
Confidence            4677888888988  4444 433333333311    12368999993  35688887 663            4688999


Q ss_pred             EecCCCCCceEEEEecCCC--ccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC-CEEEEEeCCCC
Q 029556           72 LSFPLSEESVVKRLAGDGV--QGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN-HVIRKITNLDH  135 (191)
Q Consensus        72 ~d~~~~~~g~v~~~aG~~~--~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n-~rIr~i~~~~~  135 (191)
                      +|++...+++..+.+.-..  .++.  ......+..|.+|++|++||+||+|+.. ..|.|+++.+.
T Consensus       105 ~Dl~~~~tg~~~~~~dL~~~~~~~~--~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A          105 FNLPLSENSKPVWSVNFEKVQDEFE--KKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             EESSCCTTCCCSEEEESHHHHHHHH--HHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred             EcCCcCCCCCEEEEecCcccccccc--ccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence            9973322566666654210  0000  0000134468999999999999999999 99999999875

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.08  E-value=0.00016  Score=61.61  Aligned_cols=79  Identities=11%  Similarity=0.077  Sum_probs=55.9

Q ss_pred             CCeeeEEEecC---CCeEEEEeCCC-----CeEEEEecCCCCCc---eEEEEe-cCCCccCCCCCCcccccCCCceEEEc
Q 029556           45 INPHSVIDRPG---SSDLIVLDSSR-----SAFYTLSFPLSEES---VVKRLA-GDGVQGYSDGEPGSARFDKPKSFAVD  112 (191)
Q Consensus        45 ~~P~gIav~d~---~g~lyVaD~~n-----~~I~~~d~~~~~~g---~v~~~a-G~~~~G~~DG~~~~a~f~~P~gIavD  112 (191)
                      ..|.+|+++|+   ++.+||+++.+     ++|.+++.+   ++   ..+.+. +.+.        .......|.+|+++
T Consensus        75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~---~~~~~~~~~l~~~~p~--------~~~~~h~~~~l~~~  143 (352)
T 2ism_A           75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHL---GERGVLDRVVLDGIPA--------RPHGLHSGGRIAFG  143 (352)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEEC---SSCEEEEEEEEEEECC--------CTTCCCCCCCEEEC
T ss_pred             CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeC---CCCcCceEEEEEeCCC--------CCCCCcCCceEEEC
Confidence            58999999755   58999999865     899999863   22   222222 2211        01234578999999


Q ss_pred             CCCCEEEEeC-------------CCCEEEEEeCCC
Q 029556          113 MKGNIYVADK-------------SNHVIRKITNLD  134 (191)
Q Consensus       113 ~~G~iyVaD~-------------~n~rIr~i~~~~  134 (191)
                      ++|.|||++.             .+++|.++++++
T Consensus       144 pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG  178 (352)
T 2ism_A          144 PDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG  178 (352)
T ss_dssp             TTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred             CCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence            9999999973             236899999865

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.07  E-value=4.4e-05  Score=62.55  Aligned_cols=90  Identities=14%  Similarity=0.192  Sum_probs=60.3

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~  123 (191)
                      ..|+++++++++..+|+++..+++|++++.+  .+|. ...+........ .      ....|.++++|++|++|+++..
T Consensus       182 ~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~--~~g~~~~~~~~~~~~~~-~------~~~~~~~i~~d~~G~l~v~~~~  252 (333)
T 2dg1_A          182 SVANGIALSTDEKVLWVTETTANRLHRIALE--DDGVTIQPFGATIPYYF-T------GHEGPDSCCIDSDDNLYVAMYG  252 (333)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEEC--TTSSSEEEEEEEEEEEC-C------SSSEEEEEEEBTTCCEEEEEET
T ss_pred             CcccceEECCCCCEEEEEeCCCCeEEEEEec--CCCcCcccccceEEEec-C------CCCCCCceEECCCCCEEEEEcC
Confidence            3699999974444699999999999999863  2332 322210000000 0      0136899999999999999998


Q ss_pred             CCEEEEEeCCCCCceEEEEeccC
Q 029556          124 NHVIRKITNLDHGNQLIRQINLK  146 (191)
Q Consensus       124 n~rIr~i~~~~~~~~~i~~i~~~  146 (191)
                      +++|+++++++.   .++.+..+
T Consensus       253 ~~~v~~~d~~g~---~~~~~~~~  272 (333)
T 2dg1_A          253 QGRVLVFNKRGY---PIGQILIP  272 (333)
T ss_dssp             TTEEEEECTTSC---EEEEEECT
T ss_pred             CCEEEEECCCCC---EEEEEEcC
Confidence            899999998543   44444443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.06  E-value=1.4e-05  Score=68.37  Aligned_cols=93  Identities=8%  Similarity=0.034  Sum_probs=64.6

Q ss_pred             EEecCCcEEEEEEcCccCCCCeeeEEEecCCCe-EEEEeCCCCeEEEEecCCCCCceEE-EEecCCCccCCCCCCccccc
Q 029556           26 LLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSD-LIVLDSSRSAFYTLSFPLSEESVVK-RLAGDGVQGYSDGEPGSARF  103 (191)
Q Consensus        26 l~~~dGy~~~~~~~G~~~~~~P~gIav~d~~g~-lyVaD~~n~~I~~~d~~~~~~g~v~-~~aG~~~~G~~DG~~~~a~f  103 (191)
                      +.+|+|+.+++++++..   +|.+|+++ ++|+ +||++.. ++|++++    .+|... .+++...- .      ....
T Consensus         2 ~~~p~g~~~~~va~~l~---~P~~i~~~-pdG~~l~V~e~~-G~i~~~~----~~g~~~~~~~~~~~v-~------~~g~   65 (353)
T 2g8s_A            2 AMAPATVNVEVLQDKLD---HPWALAFL-PDNHGMLITLRG-GELRHWQ----AGKGLSAPLSGVPDV-W------AHGQ   65 (353)
T ss_dssp             ----CCSEEEEEEEEES---SEEEEEEC-STTCCEEEEETT-TEEEEEE----TTTEECCCCBSCCCC-C------CSTT
T ss_pred             CCCCCCcEEEEEECCCC---CcEEEEEc-CCCCEEEEEeCC-ceEEEEe----CCCceeeEecCCccc-c------cCCC
Confidence            46789999999998765   99999995 7888 9999975 7999997    356543 23322110 0      0112


Q ss_pred             CCCceEEEcC----CCCEEEEeCC-------CCEEEEEeCCC
Q 029556          104 DKPKSFAVDM----KGNIYVADKS-------NHVIRKITNLD  134 (191)
Q Consensus       104 ~~P~gIavD~----~G~iyVaD~~-------n~rIr~i~~~~  134 (191)
                      ..|.||++++    +|.+|++++.       +++|.+++.++
T Consensus        66 ~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~  107 (353)
T 2g8s_A           66 GGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSD  107 (353)
T ss_dssp             CSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECT
T ss_pred             CCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECC
Confidence            3678999998    5899999865       46898887753

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.05  E-value=2.8e-05  Score=69.00  Aligned_cols=95  Identities=14%  Similarity=0.205  Sum_probs=69.9

Q ss_pred             EecCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCC
Q 029556           27 LLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP  106 (191)
Q Consensus        27 ~~~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P  106 (191)
                      ..++|+.+++++++..   +|.+|+++ ++|++||++...++|++++.   .+|....+...... ...    ......+
T Consensus        12 ~~~~gf~~~~~a~~l~---~P~~~a~~-pdG~l~V~e~~gg~I~~~~~---~~g~~~~~~~~~~~-~~~----~~g~~Gl   79 (454)
T 1cru_A           12 AKSENFDKKVILSNLN---KPHALLWG-PDNQIWLTERATGKILRVNP---ESGSVKTVFQVPEI-VND----ADGQNGL   79 (454)
T ss_dssp             CCCTTSCEEEEECCCS---SEEEEEEC-TTSCEEEEETTTCEEEEECT---TTCCEEEEEECTTC-CCC----TTSSCSE
T ss_pred             CCCCCeEEEEEECCCC---CceEEEEc-CCCcEEEEEcCCCEEEEEEC---CCCcEeEEecCCcc-ccc----cCCCCce
Confidence            4678999999998865   99999995 78999999998889999973   35766666543210 000    0012357


Q ss_pred             ceEEEcC----CCCEEEEeCC------------CCEEEEEeCC
Q 029556          107 KSFAVDM----KGNIYVADKS------------NHVIRKITNL  133 (191)
Q Consensus       107 ~gIavD~----~G~iyVaD~~------------n~rIr~i~~~  133 (191)
                      .||++++    +|.||++++.            ..+|.+++..
T Consensus        80 lgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~  122 (454)
T 1cru_A           80 LGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYN  122 (454)
T ss_dssp             EEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEE
T ss_pred             eEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEEC
Confidence            7999998    7899999864            4689888864

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.99  E-value=0.00036  Score=57.06  Aligned_cols=87  Identities=13%  Similarity=0.119  Sum_probs=64.1

Q ss_pred             CcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEE
Q 029556           31 GYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFA  110 (191)
Q Consensus        31 Gy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIa  110 (191)
                      +.....+.++.   ..|++++++ +++++|+++..++.|++++.   .++++..+....             -..|.+++
T Consensus        34 ~~~~~~~~~~~---~~~~~~~~~-~~g~l~~~~~~~~~i~~~d~---~~~~~~~~~~~~-------------~~~~~~i~   93 (333)
T 2dg1_A           34 AEPWLEISKKG---LQLEGLNFD-RQGQLFLLDVFEGNIFKINP---ETKEIKRPFVSH-------------KANPAAIK   93 (333)
T ss_dssp             CEEEEEEESSC---CCEEEEEEC-TTSCEEEEETTTCEEEEECT---TTCCEEEEEECS-------------SSSEEEEE
T ss_pred             cceeEEEeccC---ccccCcEEC-CCCCEEEEECCCCEEEEEeC---CCCcEEEEeeCC-------------CCCcceEE
Confidence            33444444433   479999995 78899999999999999985   345555443110             13689999


Q ss_pred             EcCCCCEEEEeCCC----CEEEEEeCCCCCc
Q 029556          111 VDMKGNIYVADKSN----HVIRKITNLDHGN  137 (191)
Q Consensus       111 vD~~G~iyVaD~~n----~rIr~i~~~~~~~  137 (191)
                      +|++|++|+++..+    ++|.+++++++..
T Consensus        94 ~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~  124 (333)
T 2dg1_A           94 IHKDGRLFVCYLGDFKSTGGIFAATENGDNL  124 (333)
T ss_dssp             ECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             ECCCCcEEEEeCCCCCCCceEEEEeCCCCEE
Confidence            99999999999877    7999999876543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.99  E-value=0.00045  Score=57.48  Aligned_cols=71  Identities=13%  Similarity=0.127  Sum_probs=56.4

Q ss_pred             CeeeEEEecCCCeEEEEeCC-CCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556           46 NPHSVIDRPGSSDLIVLDSS-RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~-n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n  124 (191)
                      .|++|++  .++.+||++.+ .++|.++|.   .++++......+              ..|.++++|++|.+|++..++
T Consensus       132 ~p~~i~~--~~~~lyv~~~~~~~~v~viD~---~t~~~~~~i~~g--------------~~p~~i~~~~dG~l~v~~~~~  192 (328)
T 3dsm_A          132 STEQMVQ--YGKYVYVNCWSYQNRILKIDT---ETDKVVDELTIG--------------IQPTSLVMDKYNKMWTITDGG  192 (328)
T ss_dssp             BCCCEEE--ETTEEEEEECTTCCEEEEEET---TTTEEEEEEECS--------------SCBCCCEECTTSEEEEEBCCB
T ss_pred             CcceEEE--ECCEEEEEcCCCCCEEEEEEC---CCCeEEEEEEcC--------------CCccceEEcCCCCEEEEECCC
Confidence            8999999  48899999984 889999986   355544333211              268999999999999999876


Q ss_pred             ----------CEEEEEeCCCC
Q 029556          125 ----------HVIRKITNLDH  135 (191)
Q Consensus       125 ----------~rIr~i~~~~~  135 (191)
                                ++|.++++++.
T Consensus       193 ~~~~~~~~~~~~v~~id~~t~  213 (328)
T 3dsm_A          193 YEGSPYGYEAPSLYRIDAETF  213 (328)
T ss_dssp             CTTCSSCBCCCEEEEEETTTT
T ss_pred             ccCCccccCCceEEEEECCCC
Confidence                      89999999754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.93  E-value=0.00058  Score=58.30  Aligned_cols=80  Identities=15%  Similarity=0.072  Sum_probs=55.0

Q ss_pred             CCeeeEEEecC---CCeEEEEeCC---C----CeEEEEecCCCCCc---eEEEEe-cCCCccCCCCCCcccccCCCceEE
Q 029556           45 INPHSVIDRPG---SSDLIVLDSS---R----SAFYTLSFPLSEES---VVKRLA-GDGVQGYSDGEPGSARFDKPKSFA  110 (191)
Q Consensus        45 ~~P~gIav~d~---~g~lyVaD~~---n----~~I~~~d~~~~~~g---~v~~~a-G~~~~G~~DG~~~~a~f~~P~gIa  110 (191)
                      ..|.+|+++|+   ++.|||+++.   +    ++|.+++.+-. ++   ..+.+. +..          ......|.+|+
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~-~~~~~~~~~l~~~~~----------~~~~h~~~~l~  141 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGS-TFKLKEVKTLIDGIP----------GAYIHNGGRIR  141 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSS-SCCEEEEEEEEEEEE----------CCSSCCCCCEE
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCC-CcCcCccEEEEEcCC----------CCCCcCCceEE
Confidence            47999999755   6999999874   3    79999986311 11   122222 211          11244689999


Q ss_pred             EcCCCCEEEEeC-------------CCCEEEEEeCCCC
Q 029556          111 VDMKGNIYVADK-------------SNHVIRKITNLDH  135 (191)
Q Consensus       111 vD~~G~iyVaD~-------------~n~rIr~i~~~~~  135 (191)
                      ++++|.|||++.             .+++|.|+++++.
T Consensus       142 ~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~  179 (354)
T 3a9g_A          142 FGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR  179 (354)
T ss_dssp             ECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred             ECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence            999999999963             2368999998664

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.91  E-value=0.0001  Score=60.98  Aligned_cols=82  Identities=18%  Similarity=0.186  Sum_probs=60.7

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~  123 (191)
                      ...|.+++++|..+++||....++++..+|.    +|++.-..--. .|..   .-...+..|.|||+|++|++||+-..
T Consensus       172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~----~g~~~~~~~L~-~g~~---~l~~~~~qpEGia~d~~G~lyIvsE~  243 (255)
T 3qqz_A          172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTL----VGEVIGEMSLT-KGSR---GLSHNIKQAEGVAMDASGNIYIVSEP  243 (255)
T ss_dssp             SSCCCEEEEETTTTEEEEEETTTTEEEEECT----TCCEEEEEECS-TTGG---GCSSCCCSEEEEEECTTCCEEEEETT
T ss_pred             cCCceeEEEcCCCCeEEEEECCCCeEEEEcC----CCCEEEEEEcC-CccC---CcccccCCCCeeEECCCCCEEEEcCC
Confidence            3578999999889999999999999999984    67644443221 1110   01235779999999999999999766


Q ss_pred             CCEEEEEeCCC
Q 029556          124 NHVIRKITNLD  134 (191)
Q Consensus       124 n~rIr~i~~~~  134 (191)
                      | .+.+|++..
T Consensus       244 n-~~y~f~~~~  253 (255)
T 3qqz_A          244 N-RFYRFTPQS  253 (255)
T ss_dssp             T-EEEEEEC--
T ss_pred             c-eEEEEEecC
Confidence            5 999998743

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.85  E-value=0.00068  Score=55.66  Aligned_cols=86  Identities=7%  Similarity=-0.024  Sum_probs=60.8

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~  123 (191)
                      ...|.+++++|++..+|+++..++.|..++++  .+|....+......+.  +.........|++++++++|.+|+++..
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~--~~g~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~spdg~l~v~~~~  160 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIA--ADGALTLTDTVQHSGH--GPRPEQDGSHIHYTDLTPDNRLAVIDLG  160 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEEC--TTSCEEEEEEEECCCC--CSSTTCSSCCEEEEEECTTSCEEEEETT
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC--CCCCeeecceeecCCC--CCCccccCCCceEEEECCCCcEEEEeCC
Confidence            35899999986666799999888999998863  3455444332111111  1111123457889999999999999999


Q ss_pred             CCEEEEEeCC
Q 029556          124 NHVIRKITNL  133 (191)
Q Consensus       124 n~rIr~i~~~  133 (191)
                      +++|+.++..
T Consensus       161 ~~~v~~~~~~  170 (347)
T 3hfq_A          161 SDKVYVYNVS  170 (347)
T ss_dssp             TTEEEEEEEC
T ss_pred             CCEEEEEEEC
Confidence            9999999876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.83  E-value=7.4e-05  Score=60.31  Aligned_cols=73  Identities=15%  Similarity=0.164  Sum_probs=56.8

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~  123 (191)
                      ..|.+++++ ++|++|+++..+++|++++.   .+|+.......             ....|.+++++++|+ ||+++..
T Consensus       226 ~~p~~i~~d-~~G~l~v~~~~~~~i~~~d~---~~g~~~~~~~~-------------~~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          226 GGADGMDFD-EDNNLLVANWGSSHIEVFGP---DGGQPKMRIRC-------------PFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             CEEEEEEEB-TTCCEEEEEETTTEEEEECT---TCBSCSEEEEC-------------SSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCceEEC-CCCCEEEEEcCCCEEEEEcC---CCCcEeEEEeC-------------CCCCceeEEECCCCCEEEEEeCC
Confidence            469999995 78999999999999999984   22543222211             114789999999998 9999999


Q ss_pred             CCEEEEEeCCC
Q 029556          124 NHVIRKITNLD  134 (191)
Q Consensus       124 n~rIr~i~~~~  134 (191)
                      +++|.+++++.
T Consensus       289 ~~~l~~~~~~~  299 (314)
T 1pjx_A          289 NNAVWKFEWQR  299 (314)
T ss_dssp             TTEEEEEECSS
T ss_pred             CCeEEEEeCCC
Confidence            89999999854

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.82  E-value=0.0017  Score=52.80  Aligned_cols=81  Identities=7%  Similarity=0.078  Sum_probs=60.6

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~  123 (191)
                      ..|.+++++|+++.+|+++..++.|+.+|.   .+++.......               ..|.+++++++|+ +|+++..
T Consensus       231 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~---~~~~~~~~~~~---------------~~~~~~~~s~dg~~l~v~~~~  292 (353)
T 3vgz_A          231 HFFINISLDTARQRAFITDSKAAEVLVVDT---RNGNILAKVAA---------------PESLAVLFNPARNEAYVTHRQ  292 (353)
T ss_dssp             CCEEEEEEETTTTEEEEEESSSSEEEEEET---TTCCEEEEEEC---------------SSCCCEEEETTTTEEEEEETT
T ss_pred             cccceEEECCCCCEEEEEeCCCCEEEEEEC---CCCcEEEEEEc---------------CCCceEEECCCCCEEEEEECC
Confidence            467889998777789999999999999986   34554333221               1357899999987 9999999


Q ss_pred             CCEEEEEeCCCCCceEEEEecc
Q 029556          124 NHVIRKITNLDHGNQLIRQINL  145 (191)
Q Consensus       124 n~rIr~i~~~~~~~~~i~~i~~  145 (191)
                      ++.|..++..+.  +.+..+..
T Consensus       293 ~~~v~~~d~~~~--~~~~~~~~  312 (353)
T 3vgz_A          293 AGKVSVIDAKSY--KVVKTFDT  312 (353)
T ss_dssp             TTEEEEEETTTT--EEEEEEEC
T ss_pred             CCeEEEEECCCC--eEEEEEec
Confidence            999999998664  34444443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.81  E-value=0.00028  Score=57.65  Aligned_cols=76  Identities=13%  Similarity=0.069  Sum_probs=58.3

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n  124 (191)
                      ..|+|+++++.++.+|++|..+++|++++.   .++....+. .      +        ..|.+++++++|++|++.  +
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~---~~~~~~~~~-~------~--------~~~~~i~~~~dG~l~v~~--~   72 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDS---FTKQVQRVT-M------D--------APVSSVALRQSGGYVATI--G   72 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEET---TTCCEEEEE-C------S--------SCEEEEEEBTTSSEEEEE--T
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEEC---CCCcEEEEe-C------C--------CceEEEEECCCCCEEEEE--C
Confidence            489999998778999999999999999985   234444332 1      0        258899999999999997  5


Q ss_pred             CEEEEEeCCCCCceEE
Q 029556          125 HVIRKITNLDHGNQLI  140 (191)
Q Consensus       125 ~rIr~i~~~~~~~~~i  140 (191)
                      ++|.+++++++..+.+
T Consensus        73 ~~l~~~d~~~g~~~~~   88 (297)
T 3g4e_A           73 TKFCALNWKEQSAVVL   88 (297)
T ss_dssp             TEEEEEETTTTEEEEE
T ss_pred             CeEEEEECCCCcEEEE
Confidence            7899999876433333

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.80  E-value=0.00026  Score=58.19  Aligned_cols=94  Identities=10%  Similarity=0.114  Sum_probs=64.7

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~  123 (191)
                      ..|.+++++|++..||+++..+++|..++++  .+|....+.....           .-..|.+++++++|. ||+++..
T Consensus       240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~--~~g~~~~~~~~~~-----------~~~~~~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT--ADGHLTLIQQIST-----------EGDFPRDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTTEEEEEEEC--GGGCEEEEEEEEC-----------SSSCCCEEEECTTSSEEEEEETT
T ss_pred             CcceeEEECCCCCEEEEEeCCCCEEEEEEEC--CCCcEEEeEEEec-----------CCCCcCeEEECCCCCEEEEEEcC
Confidence            3588999986666799999999999999863  2454444332111           012689999999986 9999998


Q ss_pred             CCEEEEE--eCCCCCceEEE-EeccCCCceE
Q 029556          124 NHVIRKI--TNLDHGNQLIR-QINLKPEDCS  151 (191)
Q Consensus       124 n~rIr~i--~~~~~~~~~i~-~i~~~~~~~~  151 (191)
                      +++|+.+  +++++..+.+. .+.++...|+
T Consensus       307 ~~~v~v~~~d~~tg~l~~~~~~~~~p~p~~~  337 (347)
T 3hfq_A          307 TDNATLYARDLTSGKLSLLQKDVTVPEGVCV  337 (347)
T ss_dssp             TTEEEEEEECTTTCCEEEEEEEEECTTEEEE
T ss_pred             CCcEEEEEEeCCCCeEEecccceecCCCcEE
Confidence            8888877  66555444444 4566655554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.77  E-value=0.00056  Score=55.63  Aligned_cols=74  Identities=12%  Similarity=0.116  Sum_probs=57.0

Q ss_pred             CCeeeEEEecCCCeEEEEeCC------CCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-E
Q 029556           45 INPHSVIDRPGSSDLIVLDSS------RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-I  117 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~------n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-i  117 (191)
                      ..|.+++++|+++.+|+++..      ++.|+++|.   .+++.......+              ..|.+++++++|. +
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~---~~~~~~~~~~~~--------------~~~~~~~~s~dg~~l  103 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDP---VTLEVTQAIHND--------------LKPFGATINNTTQTL  103 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECT---TTCCEEEEEEES--------------SCCCSEEEETTTTEE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcC---CCCeEEEEEecC--------------CCcceEEECCCCCEE
Confidence            379999998777799999977      668999985   345433322111              1588999999987 9


Q ss_pred             EEEeCCCCEEEEEeCCCC
Q 029556          118 YVADKSNHVIRKITNLDH  135 (191)
Q Consensus       118 yVaD~~n~rIr~i~~~~~  135 (191)
                      |+++..++.|+.++++++
T Consensus       104 ~v~~~~~~~v~~~d~~~~  121 (353)
T 3vgz_A          104 WFGNTVNSAVTAIDAKTG  121 (353)
T ss_dssp             EEEETTTTEEEEEETTTC
T ss_pred             EEEecCCCEEEEEeCCCC
Confidence            999999999999998765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.74  E-value=0.00038  Score=57.12  Aligned_cols=79  Identities=14%  Similarity=0.120  Sum_probs=61.2

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n  124 (191)
                      ..|+++++. .+|+++|++..+++|+.++.   .+|++.+-.+...       ....+|..|.+++++++|++||+++.+
T Consensus       165 ~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~---~tG~~~w~~~~~~-------~~~~~l~~~~~~~~~~~G~i~v~~~~g  233 (276)
T 3no2_A          165 GTPFSSAFL-DNGDCLVACGDAHCFVQLNL---ESNRIVRRVNAND-------IEGVQLFFVAQLFPLQNGGLYICNWQG  233 (276)
T ss_dssp             SCCCEEEEC-TTSCEEEECBTTSEEEEECT---TTCCEEEEEEGGG-------SBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred             CCccceeEc-CCCCEEEEeCCCCeEEEEeC---cCCcEEEEecCCC-------CCCccccccccceEcCCCCEEEEeccC
Confidence            478999994 78999999999999999985   3488777665321       012368899999999999999999743


Q ss_pred             ----------CEEEEEeCCC
Q 029556          125 ----------HVIRKITNLD  134 (191)
Q Consensus       125 ----------~rIr~i~~~~  134 (191)
                                .++..+++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~g  253 (276)
T 3no2_A          234 HDREAGKGKHPQLVEIDSEG  253 (276)
T ss_dssp             TCTTGGGSCCCSEEEECTTS
T ss_pred             ccccccccCCceEEEECCCC
Confidence                      3588888755

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.72  E-value=0.00028  Score=60.75  Aligned_cols=92  Identities=13%  Similarity=0.076  Sum_probs=67.7

Q ss_pred             cCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCce
Q 029556           29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKS  108 (191)
Q Consensus        29 ~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~g  108 (191)
                      .+.+.++++++|..   +|.+|++. ++|.+||++...++|++++.   .+|....+.+...- +      ......|.|
T Consensus        19 ~~~~~~~~va~gL~---~P~~ia~~-pdG~llVter~~G~I~~v~~---~~g~~~~v~~~~~v-~------~~g~~GllG   84 (347)
T 3das_A           19 GSVKVLRTVATGLN---SPWGLAPL-PGGDLLVSSRDEATITRVDA---KTGRKTELGEVPGV-S------PSGEGGLLG   84 (347)
T ss_dssp             CCEEEEEEEECCCS---SEEEEEEC-TTSCEEEEETTTCEEEEECT---TTCCEEEEEECTTC-C------CBTTBSEEE
T ss_pred             CCCceeEEeecCCC---CceEEEEc-CCCcEEEEEecCCEEEEEEC---CCCcEeeecccCce-e------ecCCCCcee
Confidence            36678889998877   99999995 78899999998899999973   34666555443210 0      112347899


Q ss_pred             EEEcC----CCCEEEEeC--CCCEEEEEeCCC
Q 029556          109 FAVDM----KGNIYVADK--SNHVIRKITNLD  134 (191)
Q Consensus       109 IavD~----~G~iyVaD~--~n~rIr~i~~~~  134 (191)
                      |++++    +|.+|++.+  ..++|.+++..+
T Consensus        85 ia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~  116 (347)
T 3das_A           85 IALSPDYASDHMVYAYFTSASDNRIVRMLYDE  116 (347)
T ss_dssp             EEECTTHHHHCEEEEEEECSSSEEEEEEEBCT
T ss_pred             eEeccccccCCEEEEEEecCCCCEEEEEEeCC
Confidence            99997    488999753  567999998754

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.70  E-value=0.00031  Score=60.70  Aligned_cols=105  Identities=17%  Similarity=0.249  Sum_probs=69.5

Q ss_pred             cCccCCCCeeeEEEecCCCeEEEEeC-----------------CCCeEEEEecCCCCCceEEEEecCCCccCCCCCCccc
Q 029556           39 DGHQLEINPHSVIDRPGSSDLIVLDS-----------------SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSA  101 (191)
Q Consensus        39 ~G~~~~~~P~gIav~d~~g~lyVaD~-----------------~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a  101 (191)
                      +|. .++.|++++++ ++|.+|+++.                 ...++++++.     ++++.++.              
T Consensus       160 ~g~-~~~~pND~~v~-~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-----~~~~~~~~--------------  218 (355)
T 3sre_A          160 RHK-LLPSVNDIVAV-GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-----NDVRVVAE--------------  218 (355)
T ss_dssp             CCT-TCSSEEEEEEE-ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-----TCCEEEEE--------------
T ss_pred             ccC-CCCCCceEEEe-CCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-----CeEEEeec--------------
Confidence            443 46899999995 7899999875                 2467888762     24444431              


Q ss_pred             ccCCCceEEEcCCC-CEEEEeCCCCEEEEEeCCCCC-ceEEEEeccC--CCceEeccCCCCccEEEEEe
Q 029556          102 RFDKPKSFAVDMKG-NIYVADKSNHVIRKITNLDHG-NQLIRQINLK--PEDCSKSSQSGSGMFWVTVF  166 (191)
Q Consensus       102 ~f~~P~gIavD~~G-~iyVaD~~n~rIr~i~~~~~~-~~~i~~i~~~--~~~~~~~~~~g~~~~~~~~~  166 (191)
                      .+..|+||+++++| .+||+|+..++|++++....+ ....+.+.++  +++.+....  -|.+|+...
T Consensus       219 ~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e--~G~lwva~~  285 (355)
T 3sre_A          219 GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPV--TGDLWVGCH  285 (355)
T ss_dssp             EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTT--TCCEEEEEE
T ss_pred             CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCC--CCcEEEEec
Confidence            36689999999997 699999999999999975322 2233334333  344443221  246888653

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.68  E-value=0.00037  Score=63.90  Aligned_cols=96  Identities=10%  Similarity=0.127  Sum_probs=63.5

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCC---------------------CeEEEEecCCC-C---CceEE--EEecCCCcc----
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSR---------------------SAFYTLSFPLS-E---ESVVK--RLAGDGVQG----   92 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n---------------------~~I~~~d~~~~-~---~g~v~--~~aG~~~~G----   92 (191)
                      +.+|++++++|.++.+|++-++|                     ++|+++..+-. .   +.+..  +++|.....    
T Consensus       383 mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~  462 (592)
T 4a9v_A          383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP  462 (592)
T ss_dssp             EECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred             ccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccc
Confidence            36899999987799999997764                     66888865211 1   11233  334432211    


Q ss_pred             CC--CCCCcccccCCCceEEEcCCCCEEE-EeC-----------CCCEEEEEeCCCCCceE
Q 029556           93 YS--DGEPGSARFDKPKSFAVDMKGNIYV-ADK-----------SNHVIRKITNLDHGNQL  139 (191)
Q Consensus        93 ~~--DG~~~~a~f~~P~gIavD~~G~iyV-aD~-----------~n~rIr~i~~~~~~~~~  139 (191)
                      +.  .+......|+.|++|++|++|+||| +|.           +|+.+.++++.++....
T Consensus       463 ~~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~  523 (592)
T 4a9v_A          463 KGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRR  523 (592)
T ss_dssp             GGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEE
T ss_pred             ccCccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEE
Confidence            00  0111245799999999999999999 785           36689999987654443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.67  E-value=0.00015  Score=62.35  Aligned_cols=74  Identities=11%  Similarity=0.056  Sum_probs=55.9

Q ss_pred             CeeeEEEecCCCeEEEEeCCC-CeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeC
Q 029556           46 NPHSVIDRPGSSDLIVLDSSR-SAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK  122 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n-~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~  122 (191)
                      .|++|++ |.+|++||+|+.. ..|+|++    ++|+ +..+.-..  .      ...+...|+||+++++|+ |++++.
T Consensus       138 ~~nDvav-D~~GnaYVt~s~~~~~I~rV~----pdG~~~~~~~~~~--~------~~~~~~G~nGIv~~pdg~~Liv~~~  204 (334)
T 2p9w_A          138 GVVQSAQ-DRDGNSYVAFALGMPAIARVS----ADGKTVSTFAWES--G------NGGQRPGYSGITFDPHSNKLIAFGG  204 (334)
T ss_dssp             EEEEEEE-CTTSCEEEEEEESSCEEEEEC----TTSCCEEEEEECC--C------CSSSCCSCSEEEEETTTTEEEEESS
T ss_pred             CCceeEE-CCCCCEEEeCCCCCCeEEEEe----CCCCEEeeeeecC--C------CcccccCcceEEEeCCCCEEEEEcC
Confidence            4899999 5899999999999 9999998    4665 33332111  0      012345799999999986 667777


Q ss_pred             CCCEEEEEeCC
Q 029556          123 SNHVIRKITNL  133 (191)
Q Consensus       123 ~n~rIr~i~~~  133 (191)
                       .++|.+|+..
T Consensus       205 -~g~L~~fD~~  214 (334)
T 2p9w_A          205 -PRALTAFDVS  214 (334)
T ss_dssp             -SSSEEEEECS
T ss_pred             -CCeEEEEcCC
Confidence             9999999976

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.49  E-value=0.0032  Score=51.44  Aligned_cols=71  Identities=13%  Similarity=0.027  Sum_probs=59.3

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n  124 (191)
                      ..|++++++ .+|++++++..+++|+.+|.    +|+..+-.+.+              ..|.++..+++|+++|++..+
T Consensus       125 ~~~~~v~~~-~~G~~lv~~~~~~~v~~~d~----~G~~~w~~~~~--------------~~~~~~~~~~~g~~~v~~~~~  185 (276)
T 3no2_A          125 AQFRQINKN-KKGNYLVPLFATSEVREIAP----NGQLLNSVKLS--------------GTPFSSAFLDNGDCLVACGDA  185 (276)
T ss_dssp             GSCSCCEEC-TTSCEEEEETTTTEEEEECT----TSCEEEEEECS--------------SCCCEEEECTTSCEEEECBTT
T ss_pred             ccccCceEC-CCCCEEEEecCCCEEEEECC----CCCEEEEEECC--------------CCccceeEcCCCCEEEEeCCC
Confidence            357888884 78999999999999999984    58776665431              258889999999999999999


Q ss_pred             CEEEEEeCCC
Q 029556          125 HVIRKITNLD  134 (191)
Q Consensus       125 ~rIr~i~~~~  134 (191)
                      ++|..+++++
T Consensus       186 ~~v~~~d~~t  195 (276)
T 3no2_A          186 HCFVQLNLES  195 (276)
T ss_dssp             SEEEEECTTT
T ss_pred             CeEEEEeCcC
Confidence            9999999984

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.47  E-value=0.0064  Score=50.11  Aligned_cols=78  Identities=12%  Similarity=0.126  Sum_probs=55.7

Q ss_pred             CCeeeEEEecCCCeEEEEeCC-CCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeC
Q 029556           45 INPHSVIDRPGSSDLIVLDSS-RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK  122 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~-n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~  122 (191)
                      ..|.+++++|++..||+++.. .++|..++++. .+|+...+.....            -..|.+++++++|. +|++..
T Consensus       259 ~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~-~~g~~~~~~~~~~------------g~~~~~~~~spdg~~l~~~~~  325 (361)
T 3scy_A          259 QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDE-TNGTLTKVGYQLT------------GIHPRNFIITPNGKYLLVACR  325 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEECSSSCEEEEEEECT-TTCCEEEEEEEEC------------SSCCCEEEECTTSCEEEEEET
T ss_pred             CCcccEEECCCCCEEEEECCCCCCEEEEEEEcC-CCCcEEEeeEecC------------CCCCceEEECCCCCEEEEEEC
Confidence            468899998666679999998 88888887632 2455444321110            12689999999987 999998


Q ss_pred             CCCEEEE--EeCCCC
Q 029556          123 SNHVIRK--ITNLDH  135 (191)
Q Consensus       123 ~n~rIr~--i~~~~~  135 (191)
                      .+++|+.  ++++++
T Consensus       326 ~~~~v~v~~~d~~~g  340 (361)
T 3scy_A          326 DTNVIQIFERDQATG  340 (361)
T ss_dssp             TTTEEEEEEECTTTC
T ss_pred             CCCCEEEEEEECCCC
Confidence            8888887  565554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.47  E-value=0.00071  Score=57.61  Aligned_cols=74  Identities=14%  Similarity=0.089  Sum_probs=54.3

Q ss_pred             CeeeEEEec------CCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEE
Q 029556           46 NPHSVIDRP------GSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYV  119 (191)
Q Consensus        46 ~P~gIav~d------~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyV  119 (191)
                      .|.|+++..      -+|++||+|...++|.+++++   ++.+.....     .     ....+.+|.+++++++|.|||
T Consensus       272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~---~~~~~~~~~-----~-----~~~~~~rp~~v~~~pdG~lyv  338 (353)
T 2g8s_A          272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVN---GDKVTEDGR-----I-----LTDRGQRIRDVRTGPDGYLYV  338 (353)
T ss_dssp             CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEE---TTEEEEEEE-----E-----SGGGCCCEEEEEECTTSCEEE
T ss_pred             CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeC---CCeEeeeEE-----c-----ccCCCCceeEEEECCCCcEEE
Confidence            689999952      258999999999999999863   333211000     0     012345899999999999999


Q ss_pred             E-eCCCCEEEEEeC
Q 029556          120 A-DKSNHVIRKITN  132 (191)
Q Consensus       120 a-D~~n~rIr~i~~  132 (191)
                      + |..+++|.|+.+
T Consensus       339 ~td~~~g~I~ri~~  352 (353)
T 2g8s_A          339 LTDESSGELLKVSP  352 (353)
T ss_dssp             EECSTTEEEEEEEC
T ss_pred             EEeCCCCEEEEEeC
Confidence            7 667899999986

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.46  E-value=0.0066  Score=49.95  Aligned_cols=84  Identities=12%  Similarity=0.078  Sum_probs=60.2

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n  124 (191)
                      .++.|++++|.++.||++.-.+.+|++++.    +|.+....-.  .|          +..|.||+++.+|.+||++.++
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~----~g~v~~~i~l--~g----------~~D~EGIa~~~~g~~~vs~E~~   90 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTT----NGDLIRTIPL--DF----------VKDLETIEYIGDNQFVISDERD   90 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEET----TCCEEEEEEC--SS----------CSSEEEEEECSTTEEEEEETTT
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeC----CCCEEEEEec--CC----------CCChHHeEEeCCCEEEEEECCC
Confidence            589999998667889975445889999985    4654443311  11          2468999999999999999999


Q ss_pred             CEEEEEeCCCCCc-eEEEEec
Q 029556          125 HVIRKITNLDHGN-QLIRQIN  144 (191)
Q Consensus       125 ~rIr~i~~~~~~~-~~i~~i~  144 (191)
                      +++..++...... ..+..+.
T Consensus        91 ~~l~~~~v~~~~~i~~~~~~~  111 (255)
T 3qqz_A           91 YAIYVISLTPNSEVKILKKIK  111 (255)
T ss_dssp             TEEEEEEECTTCCEEEEEEEE
T ss_pred             CcEEEEEcCCCCeeeeeeeec
Confidence            9999988644332 3344443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.44  E-value=0.0037  Score=51.77  Aligned_cols=87  Identities=7%  Similarity=0.006  Sum_probs=62.7

Q ss_pred             CCeeeEEEecCCCeEEEEeC--CCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeC
Q 029556           45 INPHSVIDRPGSSDLIVLDS--SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~--~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~  122 (191)
                      ..|+|++++ +++.||++..  +.++|+++|.   .+|++....-.+.            -..+.|++++. +.+|++.+
T Consensus        21 ~f~~Gl~~~-~dg~Lyvstg~~~~s~v~~iD~---~tg~v~~~i~l~~------------~~fgeGi~~~g-~~lyv~t~   83 (266)
T 2iwa_A           21 AFTQGLVYA-ENDTLFESTGLYGRSSVRQVAL---QTGKVENIHKMDD------------SYFGEGLTLLN-EKLYQVVW   83 (266)
T ss_dssp             CCEEEEEEC-STTEEEEEECSTTTCEEEEEET---TTCCEEEEEECCT------------TCCEEEEEEET-TEEEEEET
T ss_pred             CCcccEEEe-CCCeEEEECCCCCCCEEEEEEC---CCCCEEEEEecCC------------CcceEEEEEeC-CEEEEEEe
Confidence            368999996 5589999975  4789999996   4566444332110            12456889983 58999999


Q ss_pred             CCCEEEEEeCCCCCceEEEEeccC-CCce
Q 029556          123 SNHVIRKITNLDHGNQLIRQINLK-PEDC  150 (191)
Q Consensus       123 ~n~rIr~i~~~~~~~~~i~~i~~~-~~~~  150 (191)
                      .++++.++|+++.  +.++.+..+ ++++
T Consensus        84 ~~~~v~viD~~t~--~v~~~i~~g~~~g~  110 (266)
T 2iwa_A           84 LKNIGFIYDRRTL--SNIKNFTHQMKDGW  110 (266)
T ss_dssp             TCSEEEEEETTTT--EEEEEEECCSSSCC
T ss_pred             cCCEEEEEECCCC--cEEEEEECCCCCeE
Confidence            9999999999754  566777666 5443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.41  E-value=0.0083  Score=48.42  Aligned_cols=97  Identities=16%  Similarity=0.258  Sum_probs=63.7

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCe-EEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSA-FYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK  122 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~-I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~  122 (191)
                      ..|++++++|++..+|+++...++ |+.++++  .+|.+.........          .-..|.+++++++|. +|+++.
T Consensus       128 ~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~--~~g~~~~~~~~~~~----------~~~~~~~~~~spdg~~l~v~~~  195 (331)
T 3u4y_A          128 YDAVGIAISPNGNGLILIDRSSANTVRRFKID--ADGVLFDTGQEFIS----------GGTRPFNITFTPDGNFAFVANL  195 (331)
T ss_dssp             TTEEEEEECTTSSCEEEEEETTTTEEEEEEEC--TTCCEEEEEEEEEC----------SSSSEEEEEECTTSSEEEEEET
T ss_pred             CCccceEECCCCCEEEEEecCCCceEEEEEEC--CCCcEeecCCcccc----------CCCCccceEECCCCCEEEEEeC
Confidence            479999997555579999998778 8888763  34443222111000          012589999999997 999999


Q ss_pred             CCCEEEEEeCCCCCc-eEEEEeccC--CCceEec
Q 029556          123 SNHVIRKITNLDHGN-QLIRQINLK--PEDCSKS  153 (191)
Q Consensus       123 ~n~rIr~i~~~~~~~-~~i~~i~~~--~~~~~~~  153 (191)
                      .+++|+.++..++.. +.+..+...  +..+++.
T Consensus       196 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~s  229 (331)
T 3u4y_A          196 IGNSIGILETQNPENITLLNAVGTNNLPGTIVVS  229 (331)
T ss_dssp             TTTEEEEEECSSTTSCEEEEEEECSSCCCCEEEC
T ss_pred             CCCeEEEEECCCCcccceeeeccCCCCCceEEEC
Confidence            999999999876533 224444332  3444444

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.37  E-value=0.0041  Score=54.99  Aligned_cols=65  Identities=9%  Similarity=0.083  Sum_probs=43.7

Q ss_pred             CeeeEEEecC---CCeEEEEeCC------------CCeEEEEecCCCCCc---eEEEEe-cCCCccCCCCCCcccccCCC
Q 029556           46 NPHSVIDRPG---SSDLIVLDSS------------RSAFYTLSFPLSEES---VVKRLA-GDGVQGYSDGEPGSARFDKP  106 (191)
Q Consensus        46 ~P~gIav~d~---~g~lyVaD~~------------n~~I~~~d~~~~~~g---~v~~~a-G~~~~G~~DG~~~~a~f~~P  106 (191)
                      -+.||+++|+   ++.|||+++.            .++|.|++.+.. ++   ..+++. +...          .....+
T Consensus        78 Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~-~~~~~~~~~i~~~~p~----------~~~H~~  146 (454)
T 1cru_A           78 GLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKS-TDTLEKPVDLLAGLPS----------SKDHQS  146 (454)
T ss_dssp             SEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETT-TTEEEEEEEEEEEECC----------CSSCCE
T ss_pred             ceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCC-CCCcCCcEEEEEcCCC----------CCCCCC
Confidence            4569999754   8999999964            468999986321 12   223332 2221          123468


Q ss_pred             ceEEEcCCCCEEEEe
Q 029556          107 KSFAVDMKGNIYVAD  121 (191)
Q Consensus       107 ~gIavD~~G~iyVaD  121 (191)
                      .+|+++++|.|||+-
T Consensus       147 ~~l~f~pDG~Lyv~~  161 (454)
T 1cru_A          147 GRLVIGPDQKIYYTI  161 (454)
T ss_dssp             EEEEECTTSCEEEEE
T ss_pred             CeEeECCCCeEEEEE
Confidence            999999999999983

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.31  E-value=0.0027  Score=52.42  Aligned_cols=90  Identities=12%  Similarity=0.107  Sum_probs=57.1

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCc----e-EEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEE
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES----V-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYV  119 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g----~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyV  119 (191)
                      +|++++++|++..+|+++..+++|+.++++.. .+    + +..........       ...-..|.+++++++|. +|+
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~-~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~spdg~~l~v  227 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPN-ANADNKEKFLTKGTPEAFK-------VAPGSGPRHLIFNSDGKFAYL  227 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTT-CCTTTCCCCEEEEEEEEEE-------CCTTCCEEEEEECTTSSEEEE
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCC-CCcccccceeeccccccee-------cCCCCCCeEEEEcCCCCEEEE
Confidence            56889997555569999999999998876421 22    1 21110000000       00113588999999996 999


Q ss_pred             EeCCCCEEEEEeCCCCCceEEEEe
Q 029556          120 ADKSNHVIRKITNLDHGNQLIRQI  143 (191)
Q Consensus       120 aD~~n~rIr~i~~~~~~~~~i~~i  143 (191)
                      ++..+++|+.++..++..+.+..+
T Consensus       228 ~~~~~~~v~v~~~~~g~~~~~~~~  251 (361)
T 3scy_A          228 INEIGGTVIAFRYADGMLDEIQTV  251 (361)
T ss_dssp             EETTTCEEEEEEEETTEEEEEEEE
T ss_pred             EcCCCCeEEEEEecCCceEEeEEE
Confidence            998889999998765433333333

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.28  E-value=0.0031  Score=51.02  Aligned_cols=80  Identities=14%  Similarity=0.214  Sum_probs=59.7

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce----EEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEE
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV----VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYV  119 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~----v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyV  119 (191)
                      ..|++++++|++..+|+++..+++|+.++.+   +++    +..+..               -..|.+++++++|. +|+
T Consensus       176 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~---~~~~~~~~~~~~~---------------~~~~~~~~~spdg~~l~v  237 (331)
T 3u4y_A          176 TRPFNITFTPDGNFAFVANLIGNSIGILETQ---NPENITLLNAVGT---------------NNLPGTIVVSRDGSTVYV  237 (331)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEECS---STTSCEEEEEEEC---------------SSCCCCEEECTTSSEEEE
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECC---CCcccceeeeccC---------------CCCCceEEECCCCCEEEE
Confidence            4799999975555699999999999999862   333    333321               13688999999998 999


Q ss_pred             EeCCCCEEEEEeCCCCCceEEEE
Q 029556          120 ADKSNHVIRKITNLDHGNQLIRQ  142 (191)
Q Consensus       120 aD~~n~rIr~i~~~~~~~~~i~~  142 (191)
                      +....+.|..++.+++..+.+..
T Consensus       238 ~~~~~~~i~~~d~~~~~~~~~~~  260 (331)
T 3u4y_A          238 LTESTVDVFNFNQLSGTLSFVKS  260 (331)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEE
T ss_pred             EEcCCCEEEEEECCCCceeeecc
Confidence            99888899999997754433433

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.22  E-value=0.0045  Score=56.90  Aligned_cols=92  Identities=11%  Similarity=0.168  Sum_probs=59.4

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCC---------------------CeEEEEecCCCC----Cce--EEEEecCCCc--cC-
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSR---------------------SAFYTLSFPLSE----ESV--VKRLAGDGVQ--GY-   93 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n---------------------~~I~~~d~~~~~----~g~--v~~~aG~~~~--G~-   93 (191)
                      +.+|++++++|.++.+|++-+.|                     ++|++++.+-+.    ..+  +.+++|....  +. 
T Consensus       383 f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~  462 (592)
T 3zwu_A          383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP  462 (592)
T ss_dssp             EECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred             EeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccccc
Confidence            57899999987799999998864                     468888753211    112  2233343221  00 


Q ss_pred             CC---CCCcccccCCCceEEEcCCCCEEEEeC------------CCCEEEEEeCCCC
Q 029556           94 SD---GEPGSARFDKPKSFAVDMKGNIYVADK------------SNHVIRKITNLDH  135 (191)
Q Consensus        94 ~D---G~~~~a~f~~P~gIavD~~G~iyVaD~------------~n~rIr~i~~~~~  135 (191)
                      .+   .......|+.|++|++|+.|+|||+.-            +|+.+...++..+
T Consensus       463 ~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g  519 (592)
T 3zwu_A          463 KGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG  519 (592)
T ss_dssp             GGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC
T ss_pred             cccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCC
Confidence            01   111345799999999999999999753            3567777777544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.16  E-value=0.018  Score=49.35  Aligned_cols=81  Identities=9%  Similarity=0.013  Sum_probs=53.1

Q ss_pred             CCeeeEEEecC---CCeEEEEeC--CCCeEEEEecCCC-----CCceEE-EEecCCCccCCCCCCcccccCCCceEEEcC
Q 029556           45 INPHSVIDRPG---SSDLIVLDS--SRSAFYTLSFPLS-----EESVVK-RLAGDGVQGYSDGEPGSARFDKPKSFAVDM  113 (191)
Q Consensus        45 ~~P~gIav~d~---~g~lyVaD~--~n~~I~~~d~~~~-----~~g~v~-~~aG~~~~G~~DG~~~~a~f~~P~gIavD~  113 (191)
                      .-|.||+++|+   ++.||++.+  ..++|.|+..+-.     .-...+ ++.+...          .....+..|++++
T Consensus        80 ~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~----------~~~H~g~~l~fgp  149 (347)
T 3das_A           80 GGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK----------GVIHNGGRIAFGP  149 (347)
T ss_dssp             BSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC----------CSSCCCCCEEECT
T ss_pred             CCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC----------CCCccCccccCCC
Confidence            46899999753   789999754  5679999976321     001122 2222221          1123567899999


Q ss_pred             CCCEEEEe-------------CCCCEEEEEeCCCC
Q 029556          114 KGNIYVAD-------------KSNHVIRKITNLDH  135 (191)
Q Consensus       114 ~G~iyVaD-------------~~n~rIr~i~~~~~  135 (191)
                      +|.|||+-             ...++|.|+++++.
T Consensus       150 DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~  184 (347)
T 3das_A          150 DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE  184 (347)
T ss_dssp             TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred             CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence            99999993             23579999998654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.15  E-value=0.0068  Score=52.38  Aligned_cols=77  Identities=9%  Similarity=0.124  Sum_probs=55.8

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCC--CceEEEEecCCCccCCCCCCcccccC-CCceEEEc--CC--CC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSE--ESVVKRLAGDGVQGYSDGEPGSARFD-KPKSFAVD--MK--GN  116 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~--~g~v~~~aG~~~~G~~DG~~~~a~f~-~P~gIavD--~~--G~  116 (191)
                      ...|+++++||..+.|||++... -|++++.+.+.  .+++...++.+            .|. .|.||++.  ++  |.
T Consensus       179 gsq~EgcvvDd~~g~Lyv~eEd~-GIw~~da~p~~~~~~~~v~~~~~g------------~l~aDvEGLai~~~~~g~gy  245 (355)
T 3amr_A          179 NSQTEGMAADDEYGRLYIAEEDE-AIWKFSAEPDGGSNGTVIDRADGR------------HLTRDIEGLTIYYAADGKGY  245 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTT-EEEEEECSTTSCSCCEEEEEBSSS------------SBCSCEEEEEEEECGGGCEE
T ss_pred             CCCcceEEEcCCCCeEEEecccc-eEEEEeCCcCCCCCceEEEEecCC------------ccccCcceEEEEecCCCCEE
Confidence            35899999988899999999985 49999853222  12333222211            222 68999995  33  56


Q ss_pred             EEEEeCCCCEEEEEeCC
Q 029556          117 IYVADKSNHVIRKITNL  133 (191)
Q Consensus       117 iyVaD~~n~rIr~i~~~  133 (191)
                      +++++.+++....++.+
T Consensus       246 LivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          246 LMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEEGGGTEEEEEESS
T ss_pred             EEEEcCCCCEEEEEECC
Confidence            99999999999999986

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.14  E-value=0.025  Score=45.14  Aligned_cols=79  Identities=8%  Similarity=0.031  Sum_probs=55.1

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCC-CEEEEeC--
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG-NIYVADK--  122 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G-~iyVaD~--  122 (191)
                      .|.+++++|++..+|+++...++|+.++.   .+++.......+..        ...-..|.+++++++| .+|+++.  
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~---~~~~~~~~~~~~~~--------~~~~~~~~~~~~s~dg~~l~~~~~~~  103 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDL---VTGETLGRIDLSTP--------EERVKSLFGAALSPDGKTLAIYESPV  103 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEET---TTCCEEEEEECCBT--------TEEEECTTCEEECTTSSEEEEEEEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEEC---CCCCeEeeEEcCCc--------ccccccccceEECCCCCEEEEEeccc
Confidence            59999998655689999999999999986   34554332221110        0012268899999998 5889852  


Q ss_pred             ---------CCCEEEEEeCCCC
Q 029556          123 ---------SNHVIRKITNLDH  135 (191)
Q Consensus       123 ---------~n~rIr~i~~~~~  135 (191)
                               .++.|+.++.++.
T Consensus       104 ~~~~~~~~~~~~~i~v~d~~~~  125 (337)
T 1pby_B          104 RLELTHFEVQPTRVALYDAETL  125 (337)
T ss_dssp             EECSSCEEECCCEEEEEETTTT
T ss_pred             ccccccccccCceEEEEECCCC
Confidence                     3589999998654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.10  E-value=0.011  Score=47.43  Aligned_cols=88  Identities=17%  Similarity=0.151  Sum_probs=58.7

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~  123 (191)
                      ..|.+++++|++..+|+++..++.|..++.+.. ++....+.....            -..|.+++++++|+ +|++...
T Consensus       231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~-~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~~~~~~  297 (343)
T 1ri6_A          231 RWAADIHITPDGRHLYACDRTASLITVFSVSED-GSVLSKEGFQPT------------ETQPRGFNVDHSGKYLIAAGQK  297 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-SCCEEEEEEEEC------------SSSCCCEEECTTSSEEEEECTT
T ss_pred             CCccceEECCCCCEEEEEecCCCEEEEEEEcCC-CCceEEeeeecC------------CCccceEEECCCCCEEEEecCC
Confidence            356789998666689999999999999987321 233333321100            01388999999987 8999887


Q ss_pred             CCEEEEE--eCCCCCceEEEEecc
Q 029556          124 NHVIRKI--TNLDHGNQLIRQINL  145 (191)
Q Consensus       124 n~rIr~i--~~~~~~~~~i~~i~~  145 (191)
                      ++.|+.+  +++++..+.+..+..
T Consensus       298 ~~~v~v~~~d~~~g~~~~~~~~~~  321 (343)
T 1ri6_A          298 SHHISVYEIVGEQGLLHEKGRYAV  321 (343)
T ss_dssp             TCEEEEEEEETTTTEEEEEEEEEC
T ss_pred             CCeEEEEEEcCCCceeeEcccccc
Confidence            7888876  555544455555544

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.09  E-value=0.0071  Score=53.28  Aligned_cols=88  Identities=8%  Similarity=-0.027  Sum_probs=60.9

Q ss_pred             CCeeeEEEecCCCeEEEEeC---------CCCeEEEEecCCCCCce-EEEE-ecCCCccCCCCCCcccccCCCceEEEcC
Q 029556           45 INPHSVIDRPGSSDLIVLDS---------SRSAFYTLSFPLSEESV-VKRL-AGDGVQGYSDGEPGSARFDKPKSFAVDM  113 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~---------~n~~I~~~d~~~~~~g~-v~~~-aG~~~~G~~DG~~~~a~f~~P~gIavD~  113 (191)
                      ..| +++++|++..+||++.         ..+.|.++|.   .+++ +..+ .+.. ..       ......|+++++++
T Consensus       119 ~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~---~t~~vv~~I~v~g~-~r-------~~~g~~P~~~~~sp  186 (426)
T 3c75_H          119 FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP---VTFLPIADIELPDA-PR-------FLVGTYQWMNALTP  186 (426)
T ss_dssp             SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT---TTCCEEEEEEETTC-CC-------CCBSCCGGGSEECT
T ss_pred             CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC---CCCcEEEEEECCCc-cc-------cccCCCcceEEEcC
Confidence            479 9999988889999986         3567999985   3443 3333 2210 00       00124799999999


Q ss_pred             CC-CEEEEeCC-CCEEEEEeCCCCCceEEEEeccC
Q 029556          114 KG-NIYVADKS-NHVIRKITNLDHGNQLIRQINLK  146 (191)
Q Consensus       114 ~G-~iyVaD~~-n~rIr~i~~~~~~~~~i~~i~~~  146 (191)
                      +| .+||+... .+.|.+||....  +.++.+.++
T Consensus       187 DGk~lyV~n~~~~~~VsVID~~t~--kvv~~I~v~  219 (426)
T 3c75_H          187 DNKNLLFYQFSPAPAVGVVDLEGK--TFDRMLDVP  219 (426)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTT--EEEEEEECC
T ss_pred             CCCEEEEEecCCCCeEEEEECCCC--eEEEEEEcC
Confidence            97 59999875 789999999765  455566554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.09  E-value=0.036  Score=45.67  Aligned_cols=98  Identities=17%  Similarity=0.282  Sum_probs=67.6

Q ss_pred             eeeeccCccEEe---cCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccC
Q 029556           17 LLFSLVSSGLLL---EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGY   93 (191)
Q Consensus        17 ~~~~~~~g~l~~---~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~   93 (191)
                      +++...++.+++   ..| .......+..   .|..++++|++..+|++...++.|+.++.   .+++.......+    
T Consensus         5 ~vs~~~d~~v~v~d~~~~-~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~d~~i~v~d~---~~~~~~~~~~~~----   73 (391)
T 1l0q_A            5 YIANSESDNISVIDVTSN-KVTATIPVGS---NPMGAVISPDGTKVYVANAHSNDVSIIDT---ATNNVIATVPAG----   73 (391)
T ss_dssp             EEEETTTTEEEEEETTTT-EEEEEEECSS---SEEEEEECTTSSEEEEEEGGGTEEEEEET---TTTEEEEEEECS----
T ss_pred             EEEcCCCCEEEEEECCCC-eEEEEeecCC---CcceEEECCCCCEEEEECCCCCeEEEEEC---CCCeEEEEEECC----
Confidence            344555666633   345 3333333333   69999998666678899988999999986   356544433211    


Q ss_pred             CCCCCcccccCCCceEEEcCCCC-EEEEeCCCCEEEEEeCCCC
Q 029556           94 SDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNLDH  135 (191)
Q Consensus        94 ~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~n~rIr~i~~~~~  135 (191)
                                ..|.+++++++|. +|++...++.|+.++..++
T Consensus        74 ----------~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~  106 (391)
T 1l0q_A           74 ----------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN  106 (391)
T ss_dssp             ----------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             ----------CCccceEECCCCCEEEEEECCCCEEEEEECCCC
Confidence                      1578999999986 8899888899999998654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.08  E-value=0.0065  Score=50.30  Aligned_cols=83  Identities=7%  Similarity=-0.122  Sum_probs=60.7

Q ss_pred             EEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEc
Q 029556           33 TVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVD  112 (191)
Q Consensus        33 ~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD  112 (191)
                      .++.+.+..  ...|++++++++++.+|++|..+++|++++.   .++....+.- +              ..|.+++++
T Consensus        39 ~~~~~~~~~--~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~---~~~~~~~~~~-~--------------~~v~~i~~~   98 (326)
T 2ghs_A           39 AGRVLDETP--MLLGEGPTFDPASGTAWWFNILERELHELHL---ASGRKTVHAL-P--------------FMGSALAKI   98 (326)
T ss_dssp             CCEEEECSC--CSBEEEEEEETTTTEEEEEEGGGTEEEEEET---TTTEEEEEEC-S--------------SCEEEEEEE
T ss_pred             ceEEeeccC--CCCCcCCeEeCCCCEEEEEECCCCEEEEEEC---CCCcEEEEEC-C--------------CcceEEEEe
Confidence            455665532  2479999998667899999999999999985   3455544321 0              157899999


Q ss_pred             CCCCEEEEeCCCCEEEEEeCCCCCc
Q 029556          113 MKGNIYVADKSNHVIRKITNLDHGN  137 (191)
Q Consensus       113 ~~G~iyVaD~~n~rIr~i~~~~~~~  137 (191)
                      ++|++|++.  ...|.++++.++..
T Consensus        99 ~dg~l~v~~--~~gl~~~d~~~g~~  121 (326)
T 2ghs_A           99 SDSKQLIAS--DDGLFLRDTATGVL  121 (326)
T ss_dssp             ETTEEEEEE--TTEEEEEETTTCCE
T ss_pred             CCCeEEEEE--CCCEEEEECCCCcE
Confidence            999999997  35699999866543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=96.89  E-value=0.0077  Score=50.25  Aligned_cols=77  Identities=17%  Similarity=0.185  Sum_probs=54.8

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~  123 (191)
                      ..|++++++|++..+|++|.++++|+.++.+  .+|+...+.....+         ..-..|.+++++++|. +|++...
T Consensus       145 ~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~--~~g~~~~~~~~~~~---------~~g~~p~~~~~spdg~~l~v~~~~  213 (365)
T 1jof_A          145 TGIHGMVFDPTETYLYSADLTANKLWTHRKL--ASGEVELVGSVDAP---------DPGDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEEC--TTSCEEEEEEEECS---------STTCCEEEEEECTTSSEEEEEETT
T ss_pred             CcceEEEECCCCCEEEEEcCCCCEEEEEEEC--CCCCEEEeeeEecC---------CCCCCCCEeEECCCCCEEEEEECC
Confidence            5899999986666799999999999999873  15655433211000         0013589999999985 8999988


Q ss_pred             CCEEEEEeC
Q 029556          124 NHVIRKITN  132 (191)
Q Consensus       124 n~rIr~i~~  132 (191)
                      +++|..++.
T Consensus       214 ~~~v~v~~~  222 (365)
T 1jof_A          214 GNRICEYVI  222 (365)
T ss_dssp             TTEEEEEEE
T ss_pred             CCeEEEEEE
Confidence            888888754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.89  E-value=0.03  Score=46.52  Aligned_cols=68  Identities=9%  Similarity=0.002  Sum_probs=50.6

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n  124 (191)
                      ..+|+++  .++.||+++..+++++++|.   .+.+ +..+. .+              ..+.|++.|. +.+|++| +.
T Consensus        97 FgeGit~--~g~~Ly~ltw~~~~v~V~D~---~Tl~~~~ti~-~~--------------~eGwGLt~Dg-~~L~vSd-Gs  154 (268)
T 3nok_A           97 FAEGLAS--DGERLYQLTWTEGLLFTWSG---MPPQRERTTR-YS--------------GEGWGLCYWN-GKLVRSD-GG  154 (268)
T ss_dssp             CEEEEEE--CSSCEEEEESSSCEEEEEET---TTTEEEEEEE-CS--------------SCCCCEEEET-TEEEEEC-SS
T ss_pred             ceeEEEE--eCCEEEEEEccCCEEEEEEC---CcCcEEEEEe-CC--------------CceeEEecCC-CEEEEEC-CC
Confidence            4577888  47899999999999999995   3444 33332 11              1357888874 6899999 58


Q ss_pred             CEEEEEeCCCC
Q 029556          125 HVIRKITNLDH  135 (191)
Q Consensus       125 ~rIr~i~~~~~  135 (191)
                      ++|+.+|+++.
T Consensus       155 ~~l~~iDp~T~  165 (268)
T 3nok_A          155 TMLTFHEPDGF  165 (268)
T ss_dssp             SEEEEECTTTC
T ss_pred             CEEEEEcCCCC
Confidence            89999999764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.87  E-value=0.022  Score=47.14  Aligned_cols=82  Identities=16%  Similarity=0.111  Sum_probs=57.7

Q ss_pred             eeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEe-cCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLA-GDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus        47 P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~a-G~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n  124 (191)
                      |++..++++++.+|++| +.++|..+|.   .+.+ ...+. |..          ...+..|+++.+. +|.+|++.+..
T Consensus       107 ~~g~glt~Dg~~l~vs~-gs~~l~viD~---~t~~v~~~I~Vg~~----------~~p~~~~nele~~-dg~lyvn~~~~  171 (266)
T 2iwa_A          107 KDGWGLATDGKILYGSD-GTSILYEIDP---HTFKLIKKHNVKYN----------GHRVIRLNELEYI-NGEVWANIWQT  171 (266)
T ss_dssp             SSCCEEEECSSSEEEEC-SSSEEEEECT---TTCCEEEEEECEET----------TEECCCEEEEEEE-TTEEEEEETTS
T ss_pred             CCeEEEEECCCEEEEEC-CCCeEEEEEC---CCCcEEEEEEECCC----------CcccccceeEEEE-CCEEEEecCCC
Confidence            66666665688999999 6889999985   2333 33322 211          1134468898888 78999999999


Q ss_pred             CEEEEEeCCCCCceEEEEecc
Q 029556          125 HVIRKITNLDHGNQLIRQINL  145 (191)
Q Consensus       125 ~rIr~i~~~~~~~~~i~~i~~  145 (191)
                      +.|.+||++++  +.++.|.+
T Consensus       172 ~~V~vID~~tg--~V~~~I~~  190 (266)
T 2iwa_A          172 DCIARISAKDG--TLLGWILL  190 (266)
T ss_dssp             SEEEEEETTTC--CEEEEEEC
T ss_pred             CeEEEEECCCC--cEEEEEEC
Confidence            99999999876  34555554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.87  E-value=0.012  Score=48.76  Aligned_cols=93  Identities=16%  Similarity=0.233  Sum_probs=56.6

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEe--cCCC----ccC----CCCCC-----------c----
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLA--GDGV----QGY----SDGEP-----------G----   99 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~a--G~~~----~G~----~DG~~-----------~----   99 (191)
                      ..+|++++  ++.||+++..+++++++|.+   +.+ +..+.  +.+.    .|.    .||..           .    
T Consensus        88 FgeGit~~--g~~ly~ltw~~~~v~v~D~~---t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I  162 (262)
T 3nol_A           88 FGEGISDW--KDKIVGLTWKNGLGFVWNIR---NLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTI  162 (262)
T ss_dssp             CEEEEEEE--TTEEEEEESSSSEEEEEETT---TCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEE
T ss_pred             ceeEEEEe--CCEEEEEEeeCCEEEEEECc---cCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEE
Confidence            45778884  67999999999999999962   222 22221  1100    000    01110           0    


Q ss_pred             -----ccccCCCceEEEcCCCCEEEEeCCCCEEEEEeCCCCCceEEEEeccC
Q 029556          100 -----SARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDHGNQLIRQINLK  146 (191)
Q Consensus       100 -----~a~f~~P~gIavD~~G~iyVaD~~n~rIr~i~~~~~~~~~i~~i~~~  146 (191)
                           ...+..++.+... +|.+|++.+..+.|.+||++++  +.++.|.+.
T Consensus       163 ~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG--~V~~~Id~~  211 (262)
T 3nol_A          163 TVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETG--KVTGIIDLN  211 (262)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTC--BEEEEEECT
T ss_pred             EeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCC--cEEEEEECC
Confidence                 0122334456665 6899999999999999999876  445555543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.85  E-value=0.1  Score=42.62  Aligned_cols=119  Identities=15%  Similarity=0.170  Sum_probs=66.1

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCC
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~  125 (191)
                      .+.+++.  +++.||++| +.++|+.+|.   .+.++...+..+..    |    ..+..++.+... +|.+|++.+..+
T Consensus       106 ~Gwglt~--dg~~L~vSd-gs~~l~~iDp---~t~~~~~~I~V~~~----g----~~~~~lNeLe~~-~G~lyanvw~s~  170 (243)
T 3mbr_X          106 EGWALTS--DDSHLYMSD-GTAVIRKLDP---DTLQQVGSIKVTAG----G----RPLDNLNELEWV-NGELLANVWLTS  170 (243)
T ss_dssp             CCCEEEE--CSSCEEEEC-SSSEEEEECT---TTCCEEEEEECEET----T----EECCCEEEEEEE-TTEEEEEETTTT
T ss_pred             CceEEee--CCCEEEEEC-CCCeEEEEeC---CCCeEEEEEEEccC----C----cccccceeeEEe-CCEEEEEECCCC
Confidence            4455554  577899999 4788999985   23332222211111    1    123345556655 689999999999


Q ss_pred             EEEEEeCCCCCceEEEEeccC---CCceEeccCCCCccEEEEEe---cCeEEEeeeeeEEEEE
Q 029556          126 VIRKITNLDHGNQLIRQINLK---PEDCSKSSQSGSGMFWVTVF---SPYLISCKSFWVHLYL  182 (191)
Q Consensus       126 rIr~i~~~~~~~~~i~~i~~~---~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~  182 (191)
                      .|.+||++++  +.+..+.+.   +..-... ......+-.++.   ..-+|-.-..|.++|.
T Consensus       171 ~I~vIDp~tG--~V~~~idl~~l~~~~~~~~-~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~  230 (243)
T 3mbr_X          171 RIARIDPASG--KVVAWIDLQALVPDADALT-DSTNDVLNGIAFDAEHDRLFVTGKRWPMLYE  230 (243)
T ss_dssp             EEEEECTTTC--BEEEEEECGGGSTTTTSCC-CTTSSCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             eEEEEECCCC--CEEEEEECCcCcccccccc-CCcCCceEEEEEcCCCCEEEEECCCCCcEEE
Confidence            9999999876  344444433   1110000 000111222222   3455666788988875

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.83  E-value=0.097  Score=43.03  Aligned_cols=74  Identities=18%  Similarity=0.367  Sum_probs=56.3

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~  123 (191)
                      ..|.+++++|++..+|++....+.|+.+|.   .+++.......+              ..|.+++++++|. +|++...
T Consensus        74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~---~~~~~~~~~~~~--------------~~~~~~~~s~dg~~l~~~~~~  136 (391)
T 1l0q_A           74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDT---TSNTVAGTVKTG--------------KSPLGLALSPDGKKLYVTNNG  136 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEET---TTTEEEEEEECS--------------SSEEEEEECTTSSEEEEEETT
T ss_pred             CCccceEECCCCCEEEEEECCCCEEEEEEC---CCCeEEEEEeCC--------------CCcceEEECCCCCEEEEEeCC
Confidence            378999998667779999988899999986   345543333211              1478899999987 7789988


Q ss_pred             CCEEEEEeCCCC
Q 029556          124 NHVIRKITNLDH  135 (191)
Q Consensus       124 n~rIr~i~~~~~  135 (191)
                      ++.|+.++...+
T Consensus       137 ~~~v~~~d~~~~  148 (391)
T 1l0q_A          137 DKTVSVINTVTK  148 (391)
T ss_dssp             TTEEEEEETTTT
T ss_pred             CCEEEEEECCCC
Confidence            999999998553

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.75  E-value=0.027  Score=45.25  Aligned_cols=81  Identities=10%  Similarity=0.009  Sum_probs=57.2

Q ss_pred             eeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCCCC
Q 029556           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNH  125 (191)
Q Consensus        47 P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~n~  125 (191)
                      +.|++++ +++.+|++...++.|+++|.   .+++.......+.            ...|.+++++++|. +|++...++
T Consensus         2 ~~g~~~~-~~~~~~v~~~~~~~v~~~d~---~~~~~~~~~~~~~------------~~~~~~~~~s~dg~~~~v~~~~~~   65 (349)
T 1jmx_B            2 DTGPALK-AGHEYMIVTNYPNNLHVVDV---ASDTVYKSCVMPD------------KFGPGTAMMAPDNRTAYVLNNHYG   65 (349)
T ss_dssp             --CCCCC-TTCEEEEEEETTTEEEEEET---TTTEEEEEEECSS------------CCSSCEEEECTTSSEEEEEETTTT
T ss_pred             Ccccccc-CCCEEEEEeCCCCeEEEEEC---CCCcEEEEEecCC------------CCCCceeEECCCCCEEEEEeCCCC
Confidence            4567774 78899999999999999986   3555433322110            11488999999986 899999999


Q ss_pred             EEEEEeCCCCCceEEEEecc
Q 029556          126 VIRKITNLDHGNQLIRQINL  145 (191)
Q Consensus       126 rIr~i~~~~~~~~~i~~i~~  145 (191)
                      .|+.++..++  +.+..+..
T Consensus        66 ~i~~~d~~t~--~~~~~~~~   83 (349)
T 1jmx_B           66 DIYGIDLDTC--KNTFHANL   83 (349)
T ss_dssp             EEEEEETTTT--EEEEEEES
T ss_pred             cEEEEeCCCC--cEEEEEEc
Confidence            9999998654  34444443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=96.73  E-value=0.0083  Score=50.04  Aligned_cols=93  Identities=6%  Similarity=-0.037  Sum_probs=60.3

Q ss_pred             CeeeEE-EecCCCeEEEEeCCCC-----eEEEEecCCCCCceEEEEec-CCCccCCCCCCcccccCCCceEEEcC---CC
Q 029556           46 NPHSVI-DRPGSSDLIVLDSSRS-----AFYTLSFPLSEESVVKRLAG-DGVQGYSDGEPGSARFDKPKSFAVDM---KG  115 (191)
Q Consensus        46 ~P~gIa-v~d~~g~lyVaD~~n~-----~I~~~d~~~~~~g~v~~~aG-~~~~G~~DG~~~~a~f~~P~gIavD~---~G  115 (191)
                      .|.+++ ++|++..||+++.+.+     +|..++++  .+|++..+.. ...           .-..|.++++++   +|
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~--~~g~~~~~~~~~~~-----------~~~~~~~~a~sp~~~dg  321 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR--DCGSIEKQLFLSPT-----------PTSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC--TTSCEEEEEEEEEC-----------SSCCTTCCCEEECTTCT
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC--CCCCEEEeeeeeec-----------CCCCcccceecCCCcCC
Confidence            489999 9866668999987766     88888763  3566554221 000           012578888888   55


Q ss_pred             -CEEEEeCCCCEEEEEeCCCCCceEEEEeccCCCceE
Q 029556          116 -NIYVADKSNHVIRKITNLDHGNQLIRQINLKPEDCS  151 (191)
Q Consensus       116 -~iyVaD~~n~rIr~i~~~~~~~~~i~~i~~~~~~~~  151 (191)
                       .+|++...++.|+.++.+....+.+..+.++...|.
T Consensus       322 ~~l~v~~~~~~~v~v~~~~~~~l~~~~~~~~~~p~~~  358 (365)
T 1jof_A          322 EWMAITDDQEGWLEIYRWKDEFLHRVARVRIPEPGFG  358 (365)
T ss_dssp             TEEEEECSSSCEEEEEEEETTEEEEEEEEECCSTTEE
T ss_pred             CEEEEEEcCCCeEEEEEEchhhCceeeEEEcCCCcce
Confidence             599998888888888765443333445555554453

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.64  E-value=0.022  Score=49.01  Aligned_cols=78  Identities=5%  Similarity=-0.088  Sum_probs=54.7

Q ss_pred             CCeeeEEEecCCCeEEEEeC---------CCCeEEEEecCCCCCce-EEEE-ecCCCccCCCCCCcccccCCCceEEEcC
Q 029556           45 INPHSVIDRPGSSDLIVLDS---------SRSAFYTLSFPLSEESV-VKRL-AGDGVQGYSDGEPGSARFDKPKSFAVDM  113 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~---------~n~~I~~~d~~~~~~g~-v~~~-aG~~~~G~~DG~~~~a~f~~P~gIavD~  113 (191)
                      ..| +++++|++..+||+++         ..+.|.++|.   .+++ +..+ +|.+ ..       ......|+++++++
T Consensus        66 ~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~---~T~~vv~~I~v~~~-~~-------~~~g~~P~~ia~Sp  133 (368)
T 1mda_H           66 FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP---VTFLPIADIELPDA-PR-------FSVGPRVHIIGNCA  133 (368)
T ss_dssp             TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT---TTCCEEEEEEETTS-CS-------CCBSCCTTSEEECT
T ss_pred             CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEEC---CCCCEEEEEECCCc-cc-------cccCCCcceEEEcC
Confidence            369 9999988889999984         4688999986   3443 3333 2210 00       01124799999999


Q ss_pred             CC-CEEEEeCC-CCEEEE--EeCCC
Q 029556          114 KG-NIYVADKS-NHVIRK--ITNLD  134 (191)
Q Consensus       114 ~G-~iyVaD~~-n~rIr~--i~~~~  134 (191)
                      +| .+||+... ++.|..  +|+.+
T Consensus       134 DGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          134 SSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             TSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CCCEEEEEccCCCCeEEEEEEchhh
Confidence            97 59999875 677888  88754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.59  E-value=0.012  Score=48.85  Aligned_cols=83  Identities=8%  Similarity=0.026  Sum_probs=54.9

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCC
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~  125 (191)
                      .+.|++.  +++.||++| +.++|+.+|.   .+.++...+-.+.    +    ...+..++.+... +|.+|++.+..+
T Consensus       137 eGwGLt~--Dg~~L~vSd-Gs~~l~~iDp---~T~~v~~~I~V~~----~----g~~v~~lNeLe~~-dG~lyanvw~s~  201 (268)
T 3nok_A          137 EGWGLCY--WNGKLVRSD-GGTMLTFHEP---DGFALVGAVQVKL----R----GQPVELINELECA-NGVIYANIWHSS  201 (268)
T ss_dssp             CCCCEEE--ETTEEEEEC-SSSEEEEECT---TTCCEEEEEECEE----T----TEECCCEEEEEEE-TTEEEEEETTCS
T ss_pred             ceeEEec--CCCEEEEEC-CCCEEEEEcC---CCCeEEEEEEeCC----C----CcccccccccEEe-CCEEEEEECCCC
Confidence            3456665  478999999 5889999985   3333322221111    0    1234456677776 789999999999


Q ss_pred             EEEEEeCCCCCceEEEEecc
Q 029556          126 VIRKITNLDHGNQLIRQINL  145 (191)
Q Consensus       126 rIr~i~~~~~~~~~i~~i~~  145 (191)
                      .|.+||++++  +.++.|.+
T Consensus       202 ~I~vIDp~TG--~V~~~Idl  219 (268)
T 3nok_A          202 DVLEIDPATG--TVVGVIDA  219 (268)
T ss_dssp             EEEEECTTTC--BEEEEEEC
T ss_pred             eEEEEeCCCC--cEEEEEEC
Confidence            9999999876  34444543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=96.59  E-value=0.12  Score=44.96  Aligned_cols=89  Identities=8%  Similarity=0.006  Sum_probs=61.0

Q ss_pred             CCeeeEEEecCCCeEEEEeC---------CCCeEEEEecCCCCCce-EEEE-ecCCCccCCCCCCcccccCCCceEEEcC
Q 029556           45 INPHSVIDRPGSSDLIVLDS---------SRSAFYTLSFPLSEESV-VKRL-AGDGVQGYSDGEPGSARFDKPKSFAVDM  113 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~---------~n~~I~~~d~~~~~~g~-v~~~-aG~~~~G~~DG~~~~a~f~~P~gIavD~  113 (191)
                      ..|+ ++++|++..+||+++         ..+.|.++|.   .+++ +..+ .+.+..        ...-..|.++++++
T Consensus        79 ~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~---~t~~v~~~I~v~~g~r--------~~~g~~P~~~a~sp  146 (386)
T 3sjl_D           79 FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP---VTLLPTADIELPDAPR--------FLVGTYPWMTSLTP  146 (386)
T ss_dssp             SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT---TTCCEEEEEEETTCCC--------CCBSCCGGGEEECT
T ss_pred             CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC---CCCeEEEEEECCCccc--------cccCCCCceEEEcC
Confidence            4686 999988888999985         2467999985   3343 3333 222110        00123799999999


Q ss_pred             CCC-EEEEeCC-CCEEEEEeCCCCCceEEEEeccCC
Q 029556          114 KGN-IYVADKS-NHVIRKITNLDHGNQLIRQINLKP  147 (191)
Q Consensus       114 ~G~-iyVaD~~-n~rIr~i~~~~~~~~~i~~i~~~~  147 (191)
                      +|. +||+... .+.|..||.+.+  +.++.|.++.
T Consensus       147 DGk~lyVan~~~~~~VsVID~~t~--~vv~tI~v~g  180 (386)
T 3sjl_D          147 DGKTLLFYQFSPAPAVGVVDLEGK--AFKRMLDVPD  180 (386)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTT--EEEEEEECCS
T ss_pred             CCCEEEEEEcCCCCeEEEEECCCC--cEEEEEECCC
Confidence            986 9999864 789999999775  5666776643

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=96.58  E-value=0.029  Score=47.18  Aligned_cols=85  Identities=9%  Similarity=0.089  Sum_probs=57.5

Q ss_pred             CeeeEEEecCCCeEEEEeC---------CCCeEEEEecCCCCCce-EEEEe-cCCCccCCCCCCcccccCCCceEEEcCC
Q 029556           46 NPHSVIDRPGSSDLIVLDS---------SRSAFYTLSFPLSEESV-VKRLA-GDGVQGYSDGEPGSARFDKPKSFAVDMK  114 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~---------~n~~I~~~d~~~~~~g~-v~~~a-G~~~~G~~DG~~~~a~f~~P~gIavD~~  114 (191)
                      .| +++++|++..+|+++.         ..+.|..+|.   .+++ +..+. +.+.         ...-..|.+++++++
T Consensus        52 ~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~---~t~~~~~~i~~~~~~---------~~~g~~p~~i~~spd  118 (361)
T 2oiz_A           52 NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA---DKLTFEKEISLPPKR---------VQGLNYDGLFRQTTD  118 (361)
T ss_dssp             EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET---TTCCEEEEEEECTTB---------CCBCCCGGGEEECTT
T ss_pred             CC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC---cCCcEEEEEEcCccc---------cccCCCcceEEECCC
Confidence            68 9999887889999984         2456889885   2333 33332 1100         001247999999999


Q ss_pred             CC-EEEEeCC-CCEEEEEeCCCCCceEEEE-ecc
Q 029556          115 GN-IYVADKS-NHVIRKITNLDHGNQLIRQ-INL  145 (191)
Q Consensus       115 G~-iyVaD~~-n~rIr~i~~~~~~~~~i~~-i~~  145 (191)
                      |. +|++... .+.|..++.+.+  +.++. +..
T Consensus       119 g~~l~v~n~~~~~~v~v~d~~~~--~~~~~~i~~  150 (361)
T 2oiz_A          119 GKFIVLQNASPATSIGIVDVAKG--DYVEDVTAA  150 (361)
T ss_dssp             SSEEEEEEESSSEEEEEEETTTT--EEEEEEGGG
T ss_pred             CCEEEEECCCCCCeEEEEECCCC--cEEEEEecC
Confidence            85 9999875 689999998765  45555 443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=96.50  E-value=0.078  Score=45.12  Aligned_cols=88  Identities=6%  Similarity=-0.102  Sum_probs=56.9

Q ss_pred             CCeeeEEEecCCCeEEEEeCC---------CCeEEEEecCCCCCceE-EEEecCCCccCCCCCCcccccCCCceEEEcCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSS---------RSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK  114 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~---------n~~I~~~d~~~~~~g~v-~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~  114 (191)
                      ..| +++++|++..+||++..         .+.|.++|.   .+.++ ..+. .+..+      ....-..|.+++++++
T Consensus        67 ~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~---~t~~~~~~i~-~~~~~------~~~~g~~p~~~~~spD  135 (373)
T 2mad_H           67 FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP---VTFLPIADIE-LPDAP------RFDVGPYSWMNANTPN  135 (373)
T ss_pred             CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC---CCCcEEEEEE-CCCcc------ccccCCCccceEECCC
Confidence            468 99999888899999853         467888885   23322 2221 11000      0001147999999999


Q ss_pred             CC-EEEEeCC-CCEEEEEeCCCCCceEEEE-eccC
Q 029556          115 GN-IYVADKS-NHVIRKITNLDHGNQLIRQ-INLK  146 (191)
Q Consensus       115 G~-iyVaD~~-n~rIr~i~~~~~~~~~i~~-i~~~  146 (191)
                      |. +|++... ++.|..|| +++  +.++. +.++
T Consensus       136 G~~l~v~n~~~~~~v~viD-~t~--~~~~~~i~~~  167 (373)
T 2mad_H          136 NADLLFFQFAAGPAVGLVV-QGG--SSDDQLLSSP  167 (373)
T ss_pred             CCEEEEEecCCCCeEEEEE-CCC--CEEeEEcCCC
Confidence            75 9999864 68899999 665  44555 5443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.45  E-value=0.1  Score=41.80  Aligned_cols=79  Identities=15%  Similarity=0.201  Sum_probs=55.2

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC-
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS-  123 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~-  123 (191)
                      .|.+++++|++..+|++...++.|+.++.   .+++.......+..       ...+-..|.+++++++|. +|++... 
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~---~t~~~~~~~~~~~~-------~~~~~~~~~~~~~spdg~~l~~~~~~~  113 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDL---DTCKNTFHANLSSV-------PGEVGRSMYSFAISPDGKEVYATVNPT  113 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEET---TTTEEEEEEESCCS-------TTEEEECSSCEEECTTSSEEEEEEEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeC---CCCcEEEEEEcccc-------cccccccccceEECCCCCEEEEEcccc
Confidence            69999997555579999999999999986   35554433321100       011224689999999985 8888744 


Q ss_pred             ----------CCEEEEEeCCC
Q 029556          124 ----------NHVIRKITNLD  134 (191)
Q Consensus       124 ----------n~rIr~i~~~~  134 (191)
                                ++.|+.++.++
T Consensus       114 ~~~~~~~~~~~~~i~~~d~~~  134 (349)
T 1jmx_B          114 QRLNDHYVVKPPRLEVFSTAD  134 (349)
T ss_dssp             EECSSCEEECCCEEEEEEGGG
T ss_pred             cccccccccCCCeEEEEECCC
Confidence                      57899999754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.44  E-value=0.049  Score=44.50  Aligned_cols=76  Identities=18%  Similarity=0.253  Sum_probs=54.6

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n  124 (191)
                      .++|+++.  ++.||+++..+++++++|.   .+.+ +..+. .+      +        .+.|++.| .+.+|++| +.
T Consensus        66 fgeGi~~~--~~~ly~ltw~~~~v~v~D~---~tl~~~~ti~-~~------~--------~Gwglt~d-g~~L~vSd-gs  123 (243)
T 3mbr_X           66 FGAGIVAW--RDRLIQLTWRNHEGFVYDL---ATLTPRARFR-YP------G--------EGWALTSD-DSHLYMSD-GT  123 (243)
T ss_dssp             CEEEEEEE--TTEEEEEESSSSEEEEEET---TTTEEEEEEE-CS------S--------CCCEEEEC-SSCEEEEC-SS
T ss_pred             ceeEEEEe--CCEEEEEEeeCCEEEEEEC---CcCcEEEEEe-CC------C--------CceEEeeC-CCEEEEEC-CC
Confidence            45777874  7899999999999999995   3444 33332 11      1        46788877 46899999 58


Q ss_pred             CEEEEEeCCCCCceEEEEecc
Q 029556          125 HVIRKITNLDHGNQLIRQINL  145 (191)
Q Consensus       125 ~rIr~i~~~~~~~~~i~~i~~  145 (191)
                      .+|..+|+++.  +.++.+.+
T Consensus       124 ~~l~~iDp~t~--~~~~~I~V  142 (243)
T 3mbr_X          124 AVIRKLDPDTL--QQVGSIKV  142 (243)
T ss_dssp             SEEEEECTTTC--CEEEEEEC
T ss_pred             CeEEEEeCCCC--eEEEEEEE
Confidence            89999999775  34455554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=96.39  E-value=0.053  Score=43.16  Aligned_cols=79  Identities=10%  Similarity=0.069  Sum_probs=56.0

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~  123 (191)
                      ..|.+++++|++..+|++   ++.|+.++.   .+++.......+              ..|.+++++++|+ +|++ ..
T Consensus       241 ~~~~~~~~s~dg~~l~~~---~~~v~~~d~---~~~~~~~~~~~~--------------~~~~~~~~s~dg~~l~~~-~~  299 (337)
T 1pby_B          241 VFYFSTAVNPAKTRAFGA---YNVLESFDL---EKNASIKRVPLP--------------HSYYSVNVSTDGSTVWLG-GA  299 (337)
T ss_dssp             SCEEEEEECTTSSEEEEE---ESEEEEEET---TTTEEEEEEECS--------------SCCCEEEECTTSCEEEEE-SB
T ss_pred             CceeeEEECCCCCEEEEe---CCeEEEEEC---CCCcCcceecCC--------------CceeeEEECCCCCEEEEE-cC
Confidence            468899998666778888   489999986   355543332211              2588999999987 7787 55


Q ss_pred             CCEEEEEeCCCCCceEEEEeccC
Q 029556          124 NHVIRKITNLDHGNQLIRQINLK  146 (191)
Q Consensus       124 n~rIr~i~~~~~~~~~i~~i~~~  146 (191)
                      ++.|+.++.++.  +.++.+..+
T Consensus       300 ~~~i~v~d~~~~--~~~~~~~~~  320 (337)
T 1pby_B          300 LGDLAAYDAETL--EKKGQVDLP  320 (337)
T ss_dssp             SSEEEEEETTTC--CEEEEEECG
T ss_pred             CCcEEEEECcCC--cEEEEEEcC
Confidence            789999998765  455555544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=96.32  E-value=0.051  Score=46.30  Aligned_cols=77  Identities=13%  Similarity=0.158  Sum_probs=55.0

Q ss_pred             Ceee---EEEecCCCeEEEEeC---------CCCeEEEEecCCCCCceE-EEEecCCCccCCCCCCcccccCCCceEEEc
Q 029556           46 NPHS---VIDRPGSSDLIVLDS---------SRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVD  112 (191)
Q Consensus        46 ~P~g---Iav~d~~g~lyVaD~---------~n~~I~~~d~~~~~~g~v-~~~aG~~~~G~~DG~~~~a~f~~P~gIavD  112 (191)
                      .|.+   ++++++++.+||+..         ..+.|..+|.   .++++ ..+. .+              ..|.+++++
T Consensus       265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~---~t~~vv~~i~-~g--------------~~p~~i~~s  326 (373)
T 2mad_H          265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG---LVGQTSSQIS-LG--------------HDVDAISVA  326 (373)
T ss_pred             ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC---CCCEEEEEEE-CC--------------CCcCeEEEC
Confidence            4655   888877889999754         2468999985   34444 4442 11              159999999


Q ss_pred             CCCC--EEEEeCCCCEEEEEeCCCCCceEEEE
Q 029556          113 MKGN--IYVADKSNHVIRKITNLDHGNQLIRQ  142 (191)
Q Consensus       113 ~~G~--iyVaD~~n~rIr~i~~~~~~~~~i~~  142 (191)
                      ++|.  +|++.++++.|..||.++.  +.++.
T Consensus       327 ~Dg~~~l~v~~~~~~~V~ViD~~t~--~vv~~  356 (373)
T 2mad_H          327 QDGGPDLYALSAGTEVLHIYDAGAG--DQDQS  356 (373)
T ss_pred             CCCCeEEEEEcCCCCeEEEEECCCC--CEEee
Confidence            9987  7888878899999998765  34444

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.31  E-value=0.034  Score=44.42  Aligned_cols=76  Identities=9%  Similarity=0.075  Sum_probs=55.0

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~  123 (191)
                      ..|.+++++|++..+|+++..+++|..++++. .+++...+.....            -..|.+++++++|. +|+++..
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~~~~~~  104 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP-DDGALTFAAESAL------------PGSLTHISTDHQGQFVFVGSYN  104 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECT-TTCCEEEEEEEEC------------SSCCSEEEECTTSSEEEEEETT
T ss_pred             CCCceEEECCCCCEEEEeecCCCeEEEEEecC-CCCceeecccccc------------CCCCcEEEEcCCCCEEEEEecC
Confidence            47999999866667999998888999887632 1344443321100            01689999999987 8899988


Q ss_pred             CCEEEEEeCC
Q 029556          124 NHVIRKITNL  133 (191)
Q Consensus       124 n~rIr~i~~~  133 (191)
                      ++.|+.++..
T Consensus       105 ~~~i~~~d~~  114 (343)
T 1ri6_A          105 AGNVSVTRLE  114 (343)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCeEEEEECC
Confidence            8889988874

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.14  E-value=0.059  Score=44.56  Aligned_cols=81  Identities=12%  Similarity=-0.033  Sum_probs=56.0

Q ss_pred             eeEEEecCCCeEEEEeCC--CCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCC
Q 029556           48 HSVIDRPGSSDLIVLDSS--RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (191)
Q Consensus        48 ~gIav~d~~g~lyVaD~~--n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~  125 (191)
                      +|+.++  ++.||++...  +++|+++|+   .+|++..-...+.            -....|++++. +.+|++.+.++
T Consensus        46 qGL~~~--~~~LyestG~~g~S~v~~vD~---~Tgkv~~~~~l~~------------~~FgeGit~~g-~~ly~ltw~~~  107 (262)
T 3nol_A           46 EGFFYR--NGYFYESTGLNGRSSIRKVDI---ESGKTLQQIELGK------------RYFGEGISDWK-DKIVGLTWKNG  107 (262)
T ss_dssp             EEEEEE--TTEEEEEEEETTEEEEEEECT---TTCCEEEEEECCT------------TCCEEEEEEET-TEEEEEESSSS
T ss_pred             ceEEEE--CCEEEEECCCCCCceEEEEEC---CCCcEEEEEecCC------------ccceeEEEEeC-CEEEEEEeeCC
Confidence            999995  5799999865  459999986   4666444332210            01335678874 58999999999


Q ss_pred             EEEEEeCCCCCceEEEEeccCCC
Q 029556          126 VIRKITNLDHGNQLIRQINLKPE  148 (191)
Q Consensus       126 rIr~i~~~~~~~~~i~~i~~~~~  148 (191)
                      ++.++|+++.  +.++++..+.+
T Consensus       108 ~v~v~D~~t~--~~~~ti~~~~e  128 (262)
T 3nol_A          108 LGFVWNIRNL--RQVRSFNYDGE  128 (262)
T ss_dssp             EEEEEETTTC--CEEEEEECSSC
T ss_pred             EEEEEECccC--cEEEEEECCCC
Confidence            9999998664  55666666544

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=96.13  E-value=0.17  Score=45.14  Aligned_cols=73  Identities=8%  Similarity=0.011  Sum_probs=54.1

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceE-EEEecCCCccCCCCCCcccccCCCceEEEcC----CCC-EEE
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDM----KGN-IYV  119 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v-~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~----~G~-iyV  119 (191)
                      .|++++++|++..+|+++.. +.|..+|.+. .++++ ..+. .       |       ..|.++++++    +|. +|+
T Consensus       180 ~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~-~t~~~~~~i~-~-------g-------~~p~~va~sp~~~~dg~~l~v  242 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRD-ARIDMIDLWA-KEPTKVAEIK-I-------G-------IEARSVESSKFKGYEDRYTIA  242 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETT-SEEEEEETTS-SSCEEEEEEE-C-------C-------SEEEEEEECCSTTCTTTEEEE
T ss_pred             ccceEEECCCCCEEEEECCC-CeEEEEECcC-CCCcEEEEEe-c-------C-------CCcceEEeCCCcCCCCCEEEE
Confidence            49999998777889999987 8999998621 23442 2222 1       1       1589999998    875 899


Q ss_pred             EeCCCCEEEEEeCCCC
Q 029556          120 ADKSNHVIRKITNLDH  135 (191)
Q Consensus       120 aD~~n~rIr~i~~~~~  135 (191)
                      +....+.|..+|..+.
T Consensus       243 ~~~~~~~v~v~D~~t~  258 (543)
T 1nir_A          243 GAYWPPQFAIMDGETL  258 (543)
T ss_dssp             EEEESSEEEEEETTTC
T ss_pred             EEccCCeEEEEecccc
Confidence            9887889999987553

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=96.08  E-value=0.28  Score=40.80  Aligned_cols=74  Identities=8%  Similarity=0.058  Sum_probs=53.2

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeC-
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK-  122 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~-  122 (191)
                      ..|.+++++|++..+|++....+.|+.+|.   .+++.......       +       ..|.+++++++|. ++++.. 
T Consensus       212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~---~~~~~~~~~~~-------~-------~~~~~~~~~~~g~~l~~~~~~  274 (433)
T 3bws_A          212 KWSKILLYDPIRDLVYCSNWISEDISVIDR---KTKLEIRKTDK-------I-------GLPRGLLLSKDGKELYIAQFS  274 (433)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEET---TTTEEEEECCC-------C-------SEEEEEEECTTSSEEEEEEEE
T ss_pred             CCeeEEEEcCCCCEEEEEecCCCcEEEEEC---CCCcEEEEecC-------C-------CCceEEEEcCCCCEEEEEECC
Confidence            478999998767788899988899999986   34554332211       0       1378999999884 777764 


Q ss_pred             ------CCCEEEEEeCCCC
Q 029556          123 ------SNHVIRKITNLDH  135 (191)
Q Consensus       123 ------~n~rIr~i~~~~~  135 (191)
                            .++.|+.++..++
T Consensus       275 ~~~~~~~dg~i~~~d~~~~  293 (433)
T 3bws_A          275 ASNQESGGGRLGIYSMDKE  293 (433)
T ss_dssp             SCTTCSCCEEEEEEETTTT
T ss_pred             CCccccCCCeEEEEECCCC
Confidence                  3568889987654

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=95.97  E-value=0.022  Score=52.28  Aligned_cols=62  Identities=8%  Similarity=0.030  Sum_probs=47.9

Q ss_pred             CCCeeeEEEecCCCeEEE-EeCC-----------CCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEE
Q 029556           44 EINPHSVIDRPGSSDLIV-LDSS-----------RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAV  111 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyV-aD~~-----------n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIav  111 (191)
                      ++.|.+|+++ ++|+||| +|..           ++.+++++.   .+|+++.++...            .+..|+|+++
T Consensus       475 fnsPDnL~fd-~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp---~tGel~~fl~~P------------~~aEpnGiaf  538 (592)
T 4a9v_A          475 FNSPDGLGFD-KAGRLWILTDGDSSNAGDFAGMGNNQMLCADP---ATGEIRRFMVGP------------IGCEVTGISF  538 (592)
T ss_dssp             CCCEEEEEEC-TTCCEEEEECCCCCCSGGGTTCCSCEEEEECT---TTCCEEEEEECC------------TTCEEEEEEE
T ss_pred             cCCCCceEEC-CCCCEEEEeCCCcCccccccccCCceEEEEeC---CCCeEEEEEeCC------------CCccccCCEE
Confidence            6899999994 8899999 8864           568999874   368888877321            1346899999


Q ss_pred             cCCC-CEEEEe
Q 029556          112 DMKG-NIYVAD  121 (191)
Q Consensus       112 D~~G-~iyVaD  121 (191)
                      .+++ .|||+-
T Consensus       539 SPD~ktLfV~v  549 (592)
T 4a9v_A          539 SPDQKTLFVGI  549 (592)
T ss_dssp             CTTSSEEEEEE
T ss_pred             CCCCCEEEEEE
Confidence            9996 488884

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=95.94  E-value=0.023  Score=52.29  Aligned_cols=91  Identities=18%  Similarity=0.177  Sum_probs=65.0

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCC---CceE---EEEecCCCccCCCCCCcccccCCCceEEEcCCCCEE
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSE---ESVV---KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIY  118 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~---~g~v---~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iy  118 (191)
                      ..|+|+.++|++..+||++...++|..+|.+..+   +|++   ..+......    |       ..|..+++|++|++|
T Consensus       277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v----G-------~gP~h~aF~~dG~aY  345 (595)
T 1fwx_A          277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL----G-------LGPLHTAFDGRGNAY  345 (595)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC----C-------SCEEEEEECTTSEEE
T ss_pred             CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC----C-------CCcceEEECCCCeEE
Confidence            4899999998888899999999999999873100   0100   001111111    1       269999999999999


Q ss_pred             EEeCCCCEEEEEeCCC--------CCceEEEEeccC
Q 029556          119 VADKSNHVIRKITNLD--------HGNQLIRQINLK  146 (191)
Q Consensus       119 VaD~~n~rIr~i~~~~--------~~~~~i~~i~~~  146 (191)
                      ++-...+.|.+++.+.        ...+.+.++...
T Consensus       346 ~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~  381 (595)
T 1fwx_A          346 TSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH  381 (595)
T ss_dssp             EEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS
T ss_pred             EEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc
Confidence            9999999999999744        224677777765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=95.92  E-value=0.035  Score=48.78  Aligned_cols=78  Identities=12%  Similarity=0.187  Sum_probs=57.3

Q ss_pred             Ceee---EEEecCCCeEEEEeC---------CCCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEc
Q 029556           46 NPHS---VIDRPGSSDLIVLDS---------SRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVD  112 (191)
Q Consensus        46 ~P~g---Iav~d~~g~lyVaD~---------~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD  112 (191)
                      .|.+   ++++++++.+||++.         ..+.|..+|.   .+.+ +..+...               ..|++|+++
T Consensus       317 ~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~---~T~kvv~~I~vg---------------~~P~gia~s  378 (426)
T 3c75_H          317 RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA---ETGERINKIELG---------------HEIDSINVS  378 (426)
T ss_dssp             EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET---TTCCEEEEEEEE---------------EEECEEEEC
T ss_pred             ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC---CCCeEEEEEECC---------------CCcCeEEEc
Confidence            4666   899877889999974         2357999986   3333 4443210               159999999


Q ss_pred             CCCC--EEEEeCCCCEEEEEeCCCCCceEEEEe
Q 029556          113 MKGN--IYVADKSNHVIRKITNLDHGNQLIRQI  143 (191)
Q Consensus       113 ~~G~--iyVaD~~n~rIr~i~~~~~~~~~i~~i  143 (191)
                      ++|.  +|++.+.++.|-.||..+.  +.++.|
T Consensus       379 pDg~~~lyv~n~~s~~VsVID~~t~--kvv~tI  409 (426)
T 3c75_H          379 QDAEPLLYALSAGTQTLHIYDAATG--EELRSV  409 (426)
T ss_dssp             CSSSCEEEEEETTTTEEEEEETTTC--CEEEEE
T ss_pred             cCCCEEEEEEcCCCCeEEEEECCCC--CEEEEe
Confidence            9986  8999998999999999765  455555

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=95.90  E-value=0.26  Score=44.53  Aligned_cols=74  Identities=9%  Similarity=0.040  Sum_probs=53.3

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEc----CCC-CEE
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVD----MKG-NIY  118 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD----~~G-~iy  118 (191)
                      ..|++++++|++..+|++.. .+.|.++|... .+++ +..+. .       |       ..|.+++++    ++| .+|
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~-~t~~~v~~i~-~-------G-------~~P~~ia~s~~~~pDGk~l~  259 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGR-DGKVNMIDLWM-KEPTTVAEIK-I-------G-------SEARSIETSKMEGWEDKYAI  259 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEET-TSEEEEEETTS-SSCCEEEEEE-C-------C-------SEEEEEEECCSTTCTTTEEE
T ss_pred             CCccceEECCCCCEEEEEcC-CCeEEEEECCC-CCCcEeEEEe-c-------C-------CCCceeEEccccCCCCCEEE
Confidence            37999999877778999974 56899998620 1333 22221 1       1       158999999    477 599


Q ss_pred             EEeCCCCEEEEEeCCCC
Q 029556          119 VADKSNHVIRKITNLDH  135 (191)
Q Consensus       119 VaD~~n~rIr~i~~~~~  135 (191)
                      ++....+.|..+|..+.
T Consensus       260 v~n~~~~~v~ViD~~t~  276 (567)
T 1qks_A          260 AGAYWPPQYVIMDGETL  276 (567)
T ss_dssp             EEEEETTEEEEEETTTC
T ss_pred             EEEccCCeEEEEECCCC
Confidence            99999999999997553

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=95.85  E-value=0.13  Score=43.08  Aligned_cols=77  Identities=17%  Similarity=0.217  Sum_probs=53.9

Q ss_pred             Ceee---EEEecCCCeEEEEeC----------CCCeEEEEecCCCCCceE-EEEecCCCccCCCCCCcccccCCCceEEE
Q 029556           46 NPHS---VIDRPGSSDLIVLDS----------SRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAV  111 (191)
Q Consensus        46 ~P~g---Iav~d~~g~lyVaD~----------~n~~I~~~d~~~~~~g~v-~~~aG~~~~G~~DG~~~~a~f~~P~gIav  111 (191)
                      .|.+   ++++++++.+||+..          ..+.|..+|.   .++++ ..+..        +     .   |.+|++
T Consensus       252 ~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~---~t~~~v~~i~~--------~-----~---p~~ia~  312 (361)
T 2oiz_A          252 VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDT---KTKQRVARIPG--------R-----D---ALSMTI  312 (361)
T ss_dssp             EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEET---TTTEEEEEEEC--------T-----T---CCEEEE
T ss_pred             ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEEC---CCCcEEEEEec--------C-----C---eeEEEE
Confidence            3555   899877799999864          2458999985   34543 33321        1     1   999999


Q ss_pred             cCCCC-EEEEeCCCCEEEEEeCCCCCceEEEEe
Q 029556          112 DMKGN-IYVADKSNHVIRKITNLDHGNQLIRQI  143 (191)
Q Consensus       112 D~~G~-iyVaD~~n~rIr~i~~~~~~~~~i~~i  143 (191)
                      +++|. +|++..  +.|..+|.+++.-+.++.+
T Consensus       313 spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          313 DQQRNLMLTLDG--GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             ETTTTEEEEECS--SCEEEEECSSSSCEEEEEE
T ss_pred             CCCCCEEEEeCC--CeEEEEECCCCcceeeEEe
Confidence            99986 888875  8899999876533556665

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.82  E-value=0.2  Score=41.70  Aligned_cols=73  Identities=21%  Similarity=0.320  Sum_probs=54.2

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCCC
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSN  124 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~n  124 (191)
                      .|.+++++|++..+|++...+++|+.++.   .+++.......              -..|.+++++++|. +|++...+
T Consensus       304 ~~~~~~~~~~g~~l~~~~~~~~~v~v~d~---~~~~~~~~~~~--------------~~~~~~~~~s~dg~~l~~~~~~~  366 (433)
T 3bws_A          304 NKRHIVSGNTENKIYVSDMCCSKIEVYDL---KEKKVQKSIPV--------------FDKPNTIALSPDGKYLYVSCRGP  366 (433)
T ss_dssp             CEEEEEECSSTTEEEEEETTTTEEEEEET---TTTEEEEEEEC--------------SSSEEEEEECTTSSEEEEEECCC
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEEC---CCCcEEEEecC--------------CCCCCeEEEcCCCCEEEEEecCC
Confidence            68899997555589999999999999986   34554433321              12478999999986 88888764


Q ss_pred             --------------CEEEEEeCCCC
Q 029556          125 --------------HVIRKITNLDH  135 (191)
Q Consensus       125 --------------~rIr~i~~~~~  135 (191)
                                    ++|+.++..+.
T Consensus       367 ~~~~~~~~~~g~~dg~v~~~d~~~~  391 (433)
T 3bws_A          367 NHPTEGYLKKGLVLGKVYVIDTTTD  391 (433)
T ss_dssp             CCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred             CccccccccccccceEEEEEECCCC
Confidence                          38999998654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=95.58  E-value=0.15  Score=45.35  Aligned_cols=77  Identities=12%  Similarity=0.063  Sum_probs=47.6

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCC-CccCCCCCCcccccCCCceEEEcCCCC-EEEEe
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDG-VQGYSDGEPGSARFDKPKSFAVDMKGN-IYVAD  121 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~-~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD  121 (191)
                      ..|.+|.+++++..|||++.+.+.|..++.+-..+.++.-.+-.+ .....+-......-..|.+++++++|. +|+|.
T Consensus       321 ~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            569999999888899999999999999986311122222222111 000000000000113699999999985 99997

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=95.41  E-value=0.051  Score=47.28  Aligned_cols=63  Identities=13%  Similarity=0.161  Sum_probs=47.0

Q ss_pred             eeEEEecCCCeEEEEeCCCCeEEEEecCC-C-CCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeC
Q 029556           48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPL-S-EESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (191)
Q Consensus        48 ~gIav~d~~g~lyVaD~~n~~I~~~d~~~-~-~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~  122 (191)
                      .++++||.+|+||+++..++.|.+.+.+- . ..++..+++-.           + ++..|+++++|.+|.||+.-.
T Consensus       278 ~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d-----------~-~l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          278 IALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTS-----------S-RFVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             EEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEEC-----------T-TCCSEEEEEECTTSCEEEEEC
T ss_pred             ceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEEC-----------C-CccccCeEEECCCCeEEEEEC
Confidence            35677557999999999999999998521 0 00345666532           3 788999999999999999753

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=95.31  E-value=0.28  Score=42.57  Aligned_cols=87  Identities=13%  Similarity=0.038  Sum_probs=57.4

Q ss_pred             CCCCeeeEEEecCCCeEEEEeCCC---------------CeEEEEecCCCCC--ceEEEEecCCCccCCCCCCcccccCC
Q 029556           43 LEINPHSVIDRPGSSDLIVLDSSR---------------SAFYTLSFPLSEE--SVVKRLAGDGVQGYSDGEPGSARFDK  105 (191)
Q Consensus        43 ~~~~P~gIav~d~~g~lyVaD~~n---------------~~I~~~d~~~~~~--g~v~~~aG~~~~G~~DG~~~~a~f~~  105 (191)
                      .+...+++.+ |..+.|||.|++.               -+|..+|+  ..+  ..++.+. -+..-.    ...   ..
T Consensus        85 ~lvsV~~v~i-D~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL--~t~~~~li~~y~-~p~~~~----~~~---S~  153 (381)
T 3q6k_A           85 ELTSIYQPVI-DDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDL--KQPNYPEVVRYY-FPTRLV----EKP---TY  153 (381)
T ss_dssp             SSSCEEEEEE-CTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEES--SSTTCCEEEEEE-CCGGGC----CCG---GG
T ss_pred             ceEEeeEEEE-cCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEEC--CCCCceeEEEEE-CCHHhc----ccC---Cc
Confidence            3568999999 5899999999883               25778876  234  3444443 111000    001   23


Q ss_pred             CceEEEc-C-------CCCEEEEeCCCCEEEEEeCCCCCceEE
Q 029556          106 PKSFAVD-M-------KGNIYVADKSNHVIRKITNLDHGNQLI  140 (191)
Q Consensus       106 P~gIavD-~-------~G~iyVaD~~n~rIr~i~~~~~~~~~i  140 (191)
                      -..|++| .       ++.+||+|.+...|.+++..++..-++
T Consensus       154 l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv  196 (381)
T 3q6k_A          154 FGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNV  196 (381)
T ss_dssp             EEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEE
Confidence            4578888 2       467999999999999999977644333

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=95.29  E-value=0.11  Score=45.24  Aligned_cols=82  Identities=12%  Similarity=0.104  Sum_probs=59.1

Q ss_pred             Ceee---EEEecCCCeEEEEeC---------CCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcC
Q 029556           46 NPHS---VIDRPGSSDLIVLDS---------SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM  113 (191)
Q Consensus        46 ~P~g---Iav~d~~g~lyVaD~---------~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~  113 (191)
                      .|.+   +++++..+.+||+..         ..++|..+|.   .++++....-.+              ..|++|++++
T Consensus       278 ~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~---~t~kv~~~i~vg--------------~~~~~lavs~  340 (386)
T 3sjl_D          278 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA---KTGERLAKFEMG--------------HEIDSINVSQ  340 (386)
T ss_dssp             EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET---TTCCEEEEEEEE--------------EEECEEEECS
T ss_pred             cCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC---CCCeEEEEEECC--------------CCcceEEECC
Confidence            3545   888888999999863         2368999986   445433332111              1588999999


Q ss_pred             CCC--EEEEeCCCCEEEEEeCCCCCceEEEEeccC
Q 029556          114 KGN--IYVADKSNHVIRKITNLDHGNQLIRQINLK  146 (191)
Q Consensus       114 ~G~--iyVaD~~n~rIr~i~~~~~~~~~i~~i~~~  146 (191)
                      +|.  +|++...++.|-.+|.+..  +.++.+..+
T Consensus       341 D~~~~ly~tn~~~~~VsViD~~t~--k~~~~i~~~  373 (386)
T 3sjl_D          341 DEKPLLYALSTGDKTLYIHDAESG--EELRSVNQL  373 (386)
T ss_dssp             SSSCEEEEEETTTTEEEEEETTTC--CEEEEECCC
T ss_pred             CCCeEEEEEcCCCCeEEEEECCCC--cEEEEecCC
Confidence            984  8899998999999998765  566777655

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=95.28  E-value=0.084  Score=45.33  Aligned_cols=81  Identities=10%  Similarity=0.147  Sum_probs=56.8

Q ss_pred             Ceee---EEEecCCCeEEEEeC---C-----CCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcC
Q 029556           46 NPHS---VIDRPGSSDLIVLDS---S-----RSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM  113 (191)
Q Consensus        46 ~P~g---Iav~d~~g~lyVaD~---~-----n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~  113 (191)
                      .|.+   ++++++++.+||+..   +     ...+..+|.   .+++ +..+. .+              ..|+||++++
T Consensus       262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~---~t~~vv~~i~-vg--------------~~p~gi~~s~  323 (368)
T 1mda_H          262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA---SVGQTSGPIS-NG--------------HDSDAIIAAQ  323 (368)
T ss_dssp             EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES---SSCCEEECCE-EE--------------EEECEEEECC
T ss_pred             ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEEC---CCCeEEEEEE-CC--------------CCcceEEECC
Confidence            5666   889878889999865   2     235558875   2333 22221 10              1599999999


Q ss_pred             CCC-EEEEeC-CCCEEEEEeCCCCCceEEEEeccC
Q 029556          114 KGN-IYVADK-SNHVIRKITNLDHGNQLIRQINLK  146 (191)
Q Consensus       114 ~G~-iyVaD~-~n~rIr~i~~~~~~~~~i~~i~~~  146 (191)
                      +|. +|++-. ..+.|..||.+..  +.++.|...
T Consensus       324 Dg~~l~va~~~~~~~VsVID~~t~--kvv~~I~vg  356 (368)
T 1mda_H          324 DGASDNYANSAGTEVLDIYDAASD--QDQSSVELD  356 (368)
T ss_dssp             SSSCEEEEEETTTTEEEEEESSSC--EEEEECCCC
T ss_pred             CCCEEEEEccCCCCeEEEEECCCC--cEEEEEECC
Confidence            986 899887 6899999999765  566777655

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=95.00  E-value=0.4  Score=42.75  Aligned_cols=75  Identities=11%  Similarity=0.088  Sum_probs=55.5

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCCC
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSN  124 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~n  124 (191)
                      .|.+++++++++.+|++....++|..++..-...-.+..+. .              -..|++++++++|. +|++....
T Consensus       281 ~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~--------------~~~~~~~~~spdg~~l~va~~~~  345 (543)
T 1nir_A          281 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-A--------------APFLHDGGWDSSHRYFMTAANNS  345 (543)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-C--------------CSSCCCEEECTTSCEEEEEEGGG
T ss_pred             ceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-c--------------CcCccCceECCCCCEEEEEecCC
Confidence            56789998778899999999999999986311111122221 1              12689999999997 78898888


Q ss_pred             CEEEEEeCCCC
Q 029556          125 HVIRKITNLDH  135 (191)
Q Consensus       125 ~rIr~i~~~~~  135 (191)
                      +.|..+|..++
T Consensus       346 ~~v~v~D~~tg  356 (543)
T 1nir_A          346 NKVAVIDSKDR  356 (543)
T ss_dssp             TEEEEEETTTT
T ss_pred             CeEEEEECCCC
Confidence            89999998765

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.59  E-value=0.15  Score=41.46  Aligned_cols=79  Identities=16%  Similarity=0.179  Sum_probs=52.9

Q ss_pred             EEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCC-------ceEEEEecCCCccCCCCCCcccccCC
Q 029556           33 TVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE-------SVVKRLAGDGVQGYSDGEPGSARFDK  105 (191)
Q Consensus        33 ~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~-------g~v~~~aG~~~~G~~DG~~~~a~f~~  105 (191)
                      ..+++..+  ...+.+.+|++ ++|.||.+  .+..+++++.   ++       +. .+.+|..  |.          +.
T Consensus        31 ~a~~iG~~--gw~~~~~laf~-P~G~LYaV--~~G~Ly~~~~---~t~~~~~W~~s-~t~IG~~--Gw----------~~   89 (236)
T 1tl2_A           31 RATLIGKG--GWSNFKFLFLS-PGGELYGV--LNDKIYKGTP---PTHDNDNWMGR-AKKIGNG--GW----------NQ   89 (236)
T ss_dssp             HSEEEESS--SCTTCSEEEEC-TTSCEEEE--ETTEEEEESC---CCSTTCCHHHH-CEEEECS--CG----------GG
T ss_pred             hccccCcc--ccccceeEEEC-CCccEEEE--eCCeEEEECC---CCCCccccccc-ccEeccc--cc----------cc
Confidence            44555431  23477899996 59999988  6668999985   23       22 3334431  11          11


Q ss_pred             CceEEEcCCCCEEEEeCCCCEEEEEeCCC
Q 029556          106 PKSFAVDMKGNIYVADKSNHVIRKITNLD  134 (191)
Q Consensus       106 P~gIavD~~G~iyVaD~~n~rIr~i~~~~  134 (191)
                      =..+.+|++|+||..  .+.+|.|+++.+
T Consensus        90 F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           90 FQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            246899999999998  448999999844

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.40  E-value=0.11  Score=46.03  Aligned_cols=93  Identities=16%  Similarity=0.218  Sum_probs=58.0

Q ss_pred             CCcEEEEEEcCccCCCCeeeEEEecCCC--eEEEEeCCCCeEEEEecCCCCCceE--EEEecCCCccCCCCCCcccccCC
Q 029556           30 DGYTVTTVIDGHQLEINPHSVIDRPGSS--DLIVLDSSRSAFYTLSFPLSEESVV--KRLAGDGVQGYSDGEPGSARFDK  105 (191)
Q Consensus        30 dGy~~~~~~~G~~~~~~P~gIav~d~~g--~lyVaD~~n~~I~~~d~~~~~~g~v--~~~aG~~~~G~~DG~~~~a~f~~  105 (191)
                      +||.++++++|..   +|.+|++. ++|  .+||++.. .+|++++.    +|..  ..+++... -..+|. .......
T Consensus         2 ~gf~v~~va~gL~---~P~~~a~~-pdG~~rl~V~er~-G~i~~~~~----~g~~~~~~~~~~~~-~~~~g~-~~~~e~G   70 (463)
T 2wg3_C            2 NCFCIQEVVSGLR---QPVGALHS-GDGSQRLFILEKE-GYVKILTP----EGEIFKEPYLDIHK-LVQSGI-KGGDERG   70 (463)
T ss_dssp             CCEEEEEEEEEES---SEEEEECC-SSSSCCEEEEETT-TEEEEECT----TSCBCSSCSEECTT-TBCCCC-SSSCCCS
T ss_pred             CceEEEEeccCCC---CceEEEEC-CCCCeEEEEEeCC-ceEEEEeC----CCCeeeeeecCCcc-eeccCc-cccCCCc
Confidence            5789999999876   99999996 555  59999974 68999863    3321  12222110 011110 0011235


Q ss_pred             CceEEEcCC----CCEEEEeCC--C----------CEEEEEeCC
Q 029556          106 PKSFAVDMK----GNIYVADKS--N----------HVIRKITNL  133 (191)
Q Consensus       106 P~gIavD~~----G~iyVaD~~--n----------~rIr~i~~~  133 (191)
                      +.||+++++    |.||++-+.  .          .+|.++...
T Consensus        71 llgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~  114 (463)
T 2wg3_C           71 LLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVS  114 (463)
T ss_dssp             EEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBC
T ss_pred             ceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEc
Confidence            679999985    889997532  1          377777764

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.27  E-value=0.3  Score=40.54  Aligned_cols=67  Identities=9%  Similarity=0.048  Sum_probs=42.1

Q ss_pred             EEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcC-CCCEEEEeCCC-CEEE
Q 029556           51 IDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKSN-HVIR  128 (191)
Q Consensus        51 av~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~-~G~iyVaD~~n-~rIr  128 (191)
                      ++++.+++||.+|.+..+|+++++   ..+..+.+..        +         |..+.+++ .|.||.+|+.+ .+|.
T Consensus       151 ~~~~~g~~iy~t~~g~~~Iy~~~l---~g~~~~~l~~--------~---------~~~~~~~P~g~~iy~t~~~~~~~I~  210 (302)
T 3s25_A          151 TCNTSDRYFYYNNPKNGQLYRYDT---ASQSEALFYD--------C---------NCYKPVVLDDTNVYYMDVNRDNAIV  210 (302)
T ss_dssp             CSEEETTEEEEECTTTCCEEEEET---TTTEEEEEEC--------S---------CEEEEEEEETTEEEEEEGGGTTEEE
T ss_pred             EeeEECCEEEEEeCCCceEEEEEC---CCCCEEEEeC--------C---------CccceeeecCCEEEEEEcCCCcEEE
Confidence            345568899999998999999986   2333344321        1         11123443 46788888653 5788


Q ss_pred             EEeCCCCCc
Q 029556          129 KITNLDHGN  137 (191)
Q Consensus       129 ~i~~~~~~~  137 (191)
                      +++.++...
T Consensus       211 ~~~ldG~~~  219 (302)
T 3s25_A          211 HVNINNPNP  219 (302)
T ss_dssp             EECSSSCCC
T ss_pred             EEECCCCCe
Confidence            888766443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=94.06  E-value=0.39  Score=41.36  Aligned_cols=76  Identities=12%  Similarity=0.223  Sum_probs=49.0

Q ss_pred             CCeeeEEE--ecCCCe--EEEEeCCCCeEEEEecCCCCCceEE-EEecCCCccCCCCCCcccccCCCceEEEcCC-CCEE
Q 029556           45 INPHSVID--RPGSSD--LIVLDSSRSAFYTLSFPLSEESVVK-RLAGDGVQGYSDGEPGSARFDKPKSFAVDMK-GNIY  118 (191)
Q Consensus        45 ~~P~gIav--~d~~g~--lyVaD~~n~~I~~~d~~~~~~g~v~-~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~-G~iy  118 (191)
                      ..|+|+|.  ++.++.  +||.+.. +++..+++..+.+|.+. ..+..    +.-|       ..|.|+++|++ |.||
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~----f~lg-------sq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRA----FKMN-------SQTEGMAADDEYGRLY  195 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEE----EECS-------SCEEEEEEETTTTEEE
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEE----ecCC-------CCcceEEEcCCCCeEE
Confidence            68999999  655564  7777766 68877665322334211 11111    0001       26899999975 8999


Q ss_pred             EEeCCCCEEEEEeCC
Q 029556          119 VADKSNHVIRKITNL  133 (191)
Q Consensus       119 VaD~~n~rIr~i~~~  133 (191)
                      +++.. ..|++++.+
T Consensus       196 v~eEd-~GIw~~da~  209 (355)
T 3amr_A          196 IAEED-EAIWKFSAE  209 (355)
T ss_dssp             EEETT-TEEEEEECS
T ss_pred             Eeccc-ceEEEEeCC
Confidence            99987 459999953

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=92.65  E-value=2.6  Score=37.40  Aligned_cols=98  Identities=8%  Similarity=-0.006  Sum_probs=62.4

Q ss_pred             CCeeeEEE--ecCCCeEEEEeC-----CCCeEEEEecCCCCCceEEEE--ecCCCccCCCCCCc------ccccCCCceE
Q 029556           45 INPHSVID--RPGSSDLIVLDS-----SRSAFYTLSFPLSEESVVKRL--AGDGVQGYSDGEPG------SARFDKPKSF  109 (191)
Q Consensus        45 ~~P~gIav--~d~~g~lyVaD~-----~n~~I~~~d~~~~~~g~v~~~--aG~~~~G~~DG~~~------~a~f~~P~gI  109 (191)
                      ..|..|.+  +|++...||+..     .++.|..+..+   +|.....  +....... .+...      .+.-+.|.+|
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d---~g~~~~~~vIdi~~~~v-~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE---DGKWNAEKVIEIPAEPL-EGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE---TTEEEEEEEEEECCEEC-CSSCCGGGGGGTEECCCCCCE
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec---CCceeEEEEEeCCCccc-cccccccccccccCCCceeEE
Confidence            36888877  777888999988     88888887753   2432211  11111000 01000      0112579999


Q ss_pred             EEcCCCC-EEEEeCCCCEEEEEeCCCCC-ceEEEEeccC
Q 029556          110 AVDMKGN-IYVADKSNHVIRKITNLDHG-NQLIRQINLK  146 (191)
Q Consensus       110 avD~~G~-iyVaD~~n~rIr~i~~~~~~-~~~i~~i~~~  146 (191)
                      .++++|. +||+.++.+.|+.++-.+.. .+.+..+...
T Consensus       327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tG  365 (462)
T 2ece_A          327 DISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLG  365 (462)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECB
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeC
Confidence            9999985 99999999999999975443 3555555543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=92.24  E-value=1.2  Score=40.13  Aligned_cols=73  Identities=10%  Similarity=0.077  Sum_probs=50.1

Q ss_pred             CCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCCCCEEEEEeCC
Q 029556           55 GSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNL  133 (191)
Q Consensus        55 ~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~n~rIr~i~~~  133 (191)
                      .++.+||+....+.|..+|.   .++++......+              ..|++++++++|. +|++.. .+.|.+||..
T Consensus       165 ~~~~~~V~~~~~~~V~viD~---~t~~v~~~i~~g--------------~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~  226 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDG---STYEIKTVLDTG--------------YAVHISRLSASGRYLFVIGR-DGKVNMIDLW  226 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEET---TTCCEEEEEECS--------------SCEEEEEECTTSCEEEEEET-TSEEEEEETT
T ss_pred             CCceEEEEeCCCCeEEEEEC---CCCeEEEEEeCC--------------CCccceEECCCCCEEEEEcC-CCeEEEEECC
Confidence            46689999999999999995   345444333221              1588999999986 899875 5689999985


Q ss_pred             CCCceEEEEecc
Q 029556          134 DHGNQLIRQINL  145 (191)
Q Consensus       134 ~~~~~~i~~i~~  145 (191)
                      ....+.++.+..
T Consensus       227 ~~t~~~v~~i~~  238 (567)
T 1qks_A          227 MKEPTTVAEIKI  238 (567)
T ss_dssp             SSSCCEEEEEEC
T ss_pred             CCCCcEeEEEec
Confidence            112244445543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.07  E-value=0.9  Score=40.12  Aligned_cols=81  Identities=17%  Similarity=0.077  Sum_probs=50.1

Q ss_pred             CCeeeEEEec------CCCeEEEEeCCCCeEEEEecCCCC-CceEEEE-ecCCCccCCCCCCcccccCCCceEEEcCCCC
Q 029556           45 INPHSVIDRP------GSSDLIVLDSSRSAFYTLSFPLSE-ESVVKRL-AGDGVQGYSDGEPGSARFDKPKSFAVDMKGN  116 (191)
Q Consensus        45 ~~P~gIav~d------~~g~lyVaD~~n~~I~~~d~~~~~-~g~v~~~-aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~  116 (191)
                      ..|.|+++-.      -.+.++++|.. ++|+++.++... ......+ .|...  ..+    .....+|.+++++++|.
T Consensus       276 ~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~~~~~~~~~~~~~~~~g~~~--~~~----~~~~~r~~~v~~~pdG~  348 (463)
T 2wg3_C          276 GPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQSPVTKQWQEKPLCLGTSG--SCR----GYFSGHILGFGEDELGE  348 (463)
T ss_dssp             -CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEEC-----CCEEEEECEEETT--SSC----SCCCSEEEEEEECTTCC
T ss_pred             ccccceEEEeCCCChhhcceEEEecCC-CcEEEEEeCCCCceeeEEEeecCCcc--ccc----ccccCcceEEEECCCCC
Confidence            3678888841      24568999987 789888753110 1122233 23110  000    11234799999999999


Q ss_pred             EEEEeC-------CCCEEEEEeC
Q 029556          117 IYVADK-------SNHVIRKITN  132 (191)
Q Consensus       117 iyVaD~-------~n~rIr~i~~  132 (191)
                      |||+|.       .+++|.|+..
T Consensus       349 Lyv~~~~~~~~~~~~G~I~Ri~~  371 (463)
T 2wg3_C          349 VYILSSSKSMTQTHNGKLYKIVD  371 (463)
T ss_dssp             EEEEEESSCGGGCSSEEEEEEEC
T ss_pred             EEEEeccCCcccCCCCcEEEecC
Confidence            999996       5789999983

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=90.74  E-value=5.1  Score=31.56  Aligned_cols=66  Identities=14%  Similarity=0.117  Sum_probs=41.9

Q ss_pred             eeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCCE
Q 029556           47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (191)
Q Consensus        47 P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~r  126 (191)
                      ...+++ +.++.+|++.   +.+++++    ++|+.......+             -+....+++|++|++|++.. ++.
T Consensus       179 ~~~~~~-d~~g~l~v~t---~~l~~~d----~~g~~~~~~~~~-------------~~~~~~~~~~~~g~l~v~t~-~~g  236 (330)
T 3hxj_A          179 TSAASI-GKDGTIYFGS---DKVYAIN----PDGTEKWNFYAG-------------YWTVTRPAISEDGTIYVTSL-DGH  236 (330)
T ss_dssp             CSCCEE-CTTCCEEEES---SSEEEEC----TTSCEEEEECCS-------------SCCCSCCEECTTSCEEEEET-TTE
T ss_pred             eeeeEE-cCCCEEEEEe---CEEEEEC----CCCcEEEEEccC-------------CcceeceEECCCCeEEEEcC-CCe
Confidence            345566 3677777776   6677776    244433322110             13467889999999999975 467


Q ss_pred             EEEEeCCC
Q 029556          127 IRKITNLD  134 (191)
Q Consensus       127 Ir~i~~~~  134 (191)
                      |.++++.+
T Consensus       237 l~~~~~~g  244 (330)
T 3hxj_A          237 LYAINPDG  244 (330)
T ss_dssp             EEEECTTS
T ss_pred             EEEECCCC
Confidence            88887644

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=90.20  E-value=5.7  Score=31.26  Aligned_cols=69  Identities=12%  Similarity=0.088  Sum_probs=45.9

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCC
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~  125 (191)
                      ....+++ +.++.+|++.. ++.+++++    ++|.........      +       ..+..+++|++|+||++.. ++
T Consensus       216 ~~~~~~~-~~~g~l~v~t~-~~gl~~~~----~~g~~~~~~~~~------~-------~~~~~~~~~~~g~l~v~t~-~g  275 (330)
T 3hxj_A          216 TVTRPAI-SEDGTIYVTSL-DGHLYAIN----PDGTEKWRFKTG------K-------RIESSPVIGNTDTIYFGSY-DG  275 (330)
T ss_dssp             CCSCCEE-CTTSCEEEEET-TTEEEEEC----TTSCEEEEEECS------S-------CCCSCCEECTTSCEEEECT-TC
T ss_pred             ceeceEE-CCCCeEEEEcC-CCeEEEEC----CCCCEeEEeeCC------C-------CccccceEcCCCeEEEecC-CC
Confidence            4677888 47889999875 45788886    355433332211      0       1234578898999999975 45


Q ss_pred             EEEEEeCCC
Q 029556          126 VIRKITNLD  134 (191)
Q Consensus       126 rIr~i~~~~  134 (191)
                      .|.++++.+
T Consensus       276 gl~~~d~~g  284 (330)
T 3hxj_A          276 HLYAINPDG  284 (330)
T ss_dssp             EEEEECTTS
T ss_pred             CEEEECCCC
Confidence            899999743

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=89.43  E-value=1.8  Score=39.72  Aligned_cols=91  Identities=8%  Similarity=0.064  Sum_probs=58.4

Q ss_pred             CeeeEEEec-----CCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEc--CC-CCE
Q 029556           46 NPHSVIDRP-----GSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVD--MK-GNI  117 (191)
Q Consensus        46 ~P~gIav~d-----~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD--~~-G~i  117 (191)
                      .|+ ++.+.     ++..+||+|..|+||.++|+   ...++.-+...+.     |       ..|+|+++.  ++ +.+
T Consensus        87 ~hh-~~~s~t~g~~DG~~lfVnd~~~~rVavIdl---~t~~~~~ii~ip~-----g-------~~phg~~~~~~p~~~~v  150 (595)
T 1fwx_A           87 LHH-VHMSFTEGKYDGRFLFMNDKANTRVARVRC---DVMKCDAILEIPN-----A-------KGIHGLRPQKWPRSNYV  150 (595)
T ss_dssp             BCC-EEEEEETTEEEEEEEEEEETTTTEEEEEET---TTTEEEEEEECSS-----C-------CSEEEEEECCSSBCSEE
T ss_pred             CCc-cccCCCCCCcCCCEEEEEcCCCCEEEEEEC---CCceEeeEEeCCC-----C-------CCCcceeeeecCCCcEE
Confidence            344 56653     46689999999999999997   3444444332211     1       158999984  45 568


Q ss_pred             EEEe-----------------CCCCEEEEEeCCCCCceEEEEeccC--CCceEecc
Q 029556          118 YVAD-----------------KSNHVIRKITNLDHGNQLIRQINLK--PEDCSKSS  154 (191)
Q Consensus       118 yVaD-----------------~~n~rIr~i~~~~~~~~~i~~i~~~--~~~~~~~~  154 (191)
                      |++.                 ...+.+-.||.+..  +.+.++.++  ++.++.++
T Consensus       151 ~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~--~v~~qI~Vgg~pd~~~~sp  204 (595)
T 1fwx_A          151 FCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKW--EVAWQVLVSGNLDNCDADY  204 (595)
T ss_dssp             EEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTT--EEEEEEEESSCCCCEEECS
T ss_pred             EEecccccccCCCCcccccccccCceEEEEECCCC--eEEEEEEeCCCccceEECC
Confidence            8884                 44457888888754  555666553  45555544

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=89.21  E-value=0.77  Score=38.06  Aligned_cols=64  Identities=8%  Similarity=0.145  Sum_probs=38.1

Q ss_pred             EEecCCCeEEEEe---CCCCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCCE
Q 029556           51 IDRPGSSDLIVLD---SSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHV  126 (191)
Q Consensus        51 av~d~~g~lyVaD---~~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~r  126 (191)
                      ++++.++.||.+|   .++..|+++++    +|. .+.+.....              .|  +..+ .+.||++|.+..+
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~----dGs~~~~lt~~~~--------------~~--~~~~-g~~iy~t~~g~~~  168 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRI----DGEEKKKIKNHYL--------------FT--CNTS-DRYFYYNNPKNGQ  168 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEET----TSCCCEEEESSCC--------------CC--SEEE-TTEEEEECTTTCC
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEEC----CCCCeEEEeCCCc--------------eE--eeEE-CCEEEEEeCCCce
Confidence            4555688999999   78899999986    332 333332110              11  1223 2457777666667


Q ss_pred             EEEEeCCCC
Q 029556          127 IRKITNLDH  135 (191)
Q Consensus       127 Ir~i~~~~~  135 (191)
                      |.+++.+++
T Consensus       169 Iy~~~l~g~  177 (302)
T 3s25_A          169 LYRYDTASQ  177 (302)
T ss_dssp             EEEEETTTT
T ss_pred             EEEEECCCC
Confidence            777766543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=84.43  E-value=17  Score=30.32  Aligned_cols=75  Identities=9%  Similarity=0.004  Sum_probs=48.1

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCC
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~  125 (191)
                      .-..++++|.+++++++-...+.|+..|+   ..+....+......           -.....++++++|.+.++-..++
T Consensus       166 ~V~~l~f~p~~~~~l~s~s~D~~v~iwd~---~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~g~~dg  231 (435)
T 4e54_B          166 SITGLKFNPLNTNQFYASSMEGTTRLQDF---KGNILRVFASSDTI-----------NIWFCSLDVSASSRMVVTGDNVG  231 (435)
T ss_dssp             CCCEEEECSSCTTEEEEECSSSCEEEEET---TSCEEEEEECCSSC-----------SCCCCCEEEETTTTEEEEECSSS
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEeec---cCCceeEEeccCCC-----------CccEEEEEECCCCCEEEEEeCCC
Confidence            34789997667888888788889999986   23445554432110           01234577777777766666667


Q ss_pred             EEEEEeCCC
Q 029556          126 VIRKITNLD  134 (191)
Q Consensus       126 rIr~i~~~~  134 (191)
                      .|+..+..+
T Consensus       232 ~i~~wd~~~  240 (435)
T 4e54_B          232 NVILLNMDG  240 (435)
T ss_dssp             BEEEEESSS
T ss_pred             cEeeeccCc
Confidence            777777643

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=83.79  E-value=14  Score=33.68  Aligned_cols=74  Identities=8%  Similarity=0.063  Sum_probs=47.3

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCC
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~  125 (191)
                      ....++. |.+++||++..  +-+++++.   .++++..+.....     .   ...-+.+..|+.|++|+||++-.++ 
T Consensus       451 ~v~~i~~-d~~g~lwigt~--~Gl~~~~~---~~~~~~~~~~~~~-----~---~~~~~~i~~i~~d~~g~lWigt~~~-  515 (781)
T 3v9f_A          451 DVRVFYE-DKNKKIWIGTH--AGVFVIDL---ASKKVIHHYDTSN-----S---QLLENFVRSIAQDSEGRFWIGTFGG-  515 (781)
T ss_dssp             CEEEEEE-CTTSEEEEEET--TEEEEEES---SSSSCCEEECTTT-----S---SCSCSCEEEEEECTTCCEEEEESSS-
T ss_pred             eEEEEEE-CCCCCEEEEEC--CceEEEeC---CCCeEEecccCcc-----c---ccccceeEEEEEcCCCCEEEEEcCC-
Confidence            4567777 47888998865  56888874   2344444332110     0   0112467889999999999997643 


Q ss_pred             EEEEEeCCC
Q 029556          126 VIRKITNLD  134 (191)
Q Consensus       126 rIr~i~~~~  134 (191)
                      -|.++++.+
T Consensus       516 Gl~~~~~~~  524 (781)
T 3v9f_A          516 GVGIYTPDM  524 (781)
T ss_dssp             CEEEECTTC
T ss_pred             CEEEEeCCC
Confidence            377788755

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=83.71  E-value=12  Score=34.11  Aligned_cols=75  Identities=8%  Similarity=0.053  Sum_probs=49.1

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n  124 (191)
                      ..+..++. |.+|+||++-.++ -+++++.   .++++..+...      ++-    .-+....|+.|++|+||++-. +
T Consensus       495 ~~i~~i~~-d~~g~lWigt~~~-Gl~~~~~---~~~~~~~~~~~------~~l----~~~~i~~i~~d~~g~lWi~T~-~  558 (781)
T 3v9f_A          495 NFVRSIAQ-DSEGRFWIGTFGG-GVGIYTP---DMQLVRKFNQY------EGF----CSNTINQIYRSSKGQMWLATG-E  558 (781)
T ss_dssp             SCEEEEEE-CTTCCEEEEESSS-CEEEECT---TCCEEEEECTT------TTC----SCSCEEEEEECTTSCEEEEET-T
T ss_pred             ceeEEEEE-cCCCCEEEEEcCC-CEEEEeC---CCCeEEEccCC------CCC----CCCeeEEEEECCCCCEEEEEC-C
Confidence            45678888 5899999997644 4788874   23455554321      110    112456899999999999975 3


Q ss_pred             CEEEEEeCCCC
Q 029556          125 HVIRKITNLDH  135 (191)
Q Consensus       125 ~rIr~i~~~~~  135 (191)
                      +-|.++++.+.
T Consensus       559 Glv~~~d~~~~  569 (781)
T 3v9f_A          559 GLVCFPSARNF  569 (781)
T ss_dssp             EEEEESCTTTC
T ss_pred             CceEEECCCCC
Confidence            33388888654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=83.50  E-value=14  Score=28.63  Aligned_cols=73  Identities=4%  Similarity=-0.089  Sum_probs=44.3

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n  124 (191)
                      .....++++ ++++.+++-..++.|+.++.   .+++........              ..+..+++.++|..+++-..+
T Consensus       184 ~~i~~~~~~-~~~~~l~~~~~dg~i~~~d~---~~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~~~  245 (337)
T 1gxr_A          184 DGASCIDIS-NDGTKLWTGGLDNTVRSWDL---REGRQLQQHDFT--------------SQIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             SCEEEEEEC-TTSSEEEEEETTSEEEEEET---TTTEEEEEEECS--------------SCEEEEEECTTSSEEEEEETT
T ss_pred             CceEEEEEC-CCCCEEEEEecCCcEEEEEC---CCCceEeeecCC--------------CceEEEEECCCCCEEEEEcCC
Confidence            356888896 45555555556778888886   344433322110              134567777777766555556


Q ss_pred             CEEEEEeCCCC
Q 029556          125 HVIRKITNLDH  135 (191)
Q Consensus       125 ~rIr~i~~~~~  135 (191)
                      +.|+.++..+.
T Consensus       246 ~~i~~~~~~~~  256 (337)
T 1gxr_A          246 SNVEVLHVNKP  256 (337)
T ss_dssp             SCEEEEETTSS
T ss_pred             CcEEEEECCCC
Confidence            67777776543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=82.41  E-value=21  Score=29.89  Aligned_cols=38  Identities=24%  Similarity=0.234  Sum_probs=25.3

Q ss_pred             CeeeEEEecCCCeEEEEeCC--CCeEEEEecCCCCCceEEEEe
Q 029556           46 NPHSVIDRPGSSDLIVLDSS--RSAFYTLSFPLSEESVVKRLA   86 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~--n~~I~~~d~~~~~~g~v~~~a   86 (191)
                      ....++++|++..|+.+...  +..|+.+++   .+|+...+.
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~---~tg~~~~l~  219 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTL---ANGAVRQVA  219 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEET---TTCCEEEEE
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEEC---CCCcEEEee
Confidence            56889998666666655543  368999986   356655554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=81.67  E-value=11  Score=34.57  Aligned_cols=88  Identities=9%  Similarity=0.078  Sum_probs=51.6

Q ss_pred             CcEEEEEEcCccC-CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceE
Q 029556           31 GYTVTTVIDGHQL-EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSF  109 (191)
Q Consensus        31 Gy~~~~~~~G~~~-~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gI  109 (191)
                      .|..+.+-....+ -+.-..|+- |.+|.||++-.  .-+.|+|-     .+++.+--...    +.  ..-.-+.-..|
T Consensus        28 ~~~f~~~~~~~gLs~n~v~~I~q-D~~G~lWigT~--~GL~ryDG-----~~f~~~~~~~~----~~--~~l~~n~I~~i   93 (795)
T 4a2l_A           28 QITFSYISINEGLSQSTVFSIDQ-DKRGNMWFATY--DGVNKYDG-----YAFTVYQHNED----DP--NSIANDISRIV   93 (795)
T ss_dssp             CCCCEEESGGGTCSSSCEEEEEE-CTTSCEEEEET--TEEEEECS-----SCEEEECCCTT----CT--TSCSCSCEEEE
T ss_pred             ceeEEEccccCCCccceeEEEEE-cCCCCEEEeec--CcCcccCC-----CceEEEeCCCC----CC--CcccccceeEE
Confidence            3455554322222 245678888 58999999864  45888862     23455532110    00  00011345678


Q ss_pred             EEcCCCCEEEEeCCCCEEEEEeCCC
Q 029556          110 AVDMKGNIYVADKSNHVIRKITNLD  134 (191)
Q Consensus       110 avD~~G~iyVaD~~n~rIr~i~~~~  134 (191)
                      +.|++|.|||+-.  ..+.++++..
T Consensus        94 ~~d~~g~lWigT~--~Gl~~yd~~~  116 (795)
T 4a2l_A           94 KTDSQGRVWIGTR--DGLSRYDEEK  116 (795)
T ss_dssp             EECTTSCEEEEES--SCEEEEETTT
T ss_pred             EECCCCCEEEEeC--CchheeCCCC
Confidence            8999999999864  3478888754

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=81.26  E-value=14  Score=33.59  Aligned_cols=74  Identities=16%  Similarity=0.169  Sum_probs=48.8

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCC
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~  125 (191)
                      ....|+. |.+|+||++...++-+.+++.   .++++..+...       +.   ..-..+..+..|++|+||++-.  .
T Consensus       473 ~i~~i~~-d~~g~lWi~~~t~~Gl~~~d~---~~~~~~~~~~~-------~~---~~~~~~~~i~~d~~g~lWigt~--~  536 (758)
T 3ott_A          473 FINQIIP-DNEGNVWVLLYNNKGIDKINP---RTREVTKLFAD-------EL---TGEKSPNYLLCDEDGLLWVGFH--G  536 (758)
T ss_dssp             CEEEEEE-CTTSCEEEEETTCSSEEEEET---TTTEEEEECTT-------TS---CGGGCEEEEEECTTSCEEEEET--T
T ss_pred             eeeeEEE-cCCCCEEEEccCCCCcEEEeC---CCCceEEecCC-------Cc---CCCcccceEEECCCCCEEEEec--C
Confidence            3567888 588999994333456899985   35666655311       10   0123577899999999999963  4


Q ss_pred             EEEEEeCCCC
Q 029556          126 VIRKITNLDH  135 (191)
Q Consensus       126 rIr~i~~~~~  135 (191)
                      -|.++++.+.
T Consensus       537 Gl~~~~~~~~  546 (758)
T 3ott_A          537 GVMRINPKDE  546 (758)
T ss_dssp             EEEEECC--C
T ss_pred             ceEEEecCCC
Confidence            6999998654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=80.93  E-value=8.5  Score=31.14  Aligned_cols=65  Identities=17%  Similarity=0.207  Sum_probs=40.4

Q ss_pred             eeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEE-----EEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeC
Q 029556           48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVK-----RLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADK  122 (191)
Q Consensus        48 ~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~-----~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~  122 (191)
                      ..+.+ |++|.||.+  .+.+|+|++..-  ++.-.     ..+|+  .|+          ..=+-|++|++|+||-+. 
T Consensus        91 ~a~~f-D~~G~LYav--~dG~iyr~~pP~--~~~~~Wl~~a~~vg~--~gw----------~~~~~lff~p~G~Lyav~-  152 (236)
T 1tl2_A           91 QFLFF-DPNGYLYAV--SKDKLYKASPPQ--SDTDNWIARATEVGS--GGW----------SGFKFLFFHPNGYLYAVH-  152 (236)
T ss_dssp             SEEEE-CTTSCEEEE--ETTEEEEESCCC--STTCCHHHHSEEEEC--SSG----------GGEEEEEECTTSCEEEEE-
T ss_pred             eEEEE-CCCCCEEEe--CCCEEEEeCCCc--CCCCceeccccEecc--CCC----------CceEEEEECCCceEEEEe-
Confidence            56778 599999988  448999997521  11111     11121  111          122789999999999888 


Q ss_pred             CCCEEEEEe
Q 029556          123 SNHVIRKIT  131 (191)
Q Consensus       123 ~n~rIr~i~  131 (191)
                       +.++.|-.
T Consensus       153 -dg~lyr~~  160 (236)
T 1tl2_A          153 -GQQFYKAL  160 (236)
T ss_dssp             -TTEEEEEC
T ss_pred             -CCcEEecC
Confidence             44565443

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=80.74  E-value=6.6  Score=35.85  Aligned_cols=61  Identities=10%  Similarity=0.149  Sum_probs=42.8

Q ss_pred             CCCeeeEEEecCCCeEEEEeC------------CCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEE
Q 029556           44 EINPHSVIDRPGSSDLIVLDS------------SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAV  111 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~------------~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIav  111 (191)
                      +.+|-+|+++ +.|+|||+.=            .|+.++..+.   ..|++..++-...     |       ...+|+++
T Consensus       475 f~~PDNL~fd-~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~---~~g~~~rf~~~P~-----g-------aE~TG~~f  538 (592)
T 3zwu_A          475 FNSPDGLGFD-KAGRLWILTDGDSSNAGDFAGMGNNQMLCADP---ATGEIRRFMVGPI-----G-------CEVTGISF  538 (592)
T ss_dssp             CCCEEEEEEC-TTCCEEEEECCCCCCSGGGTTTCSCEEEEECT---TTCCEEEEEECCT-----T-------CEEEEEEE
T ss_pred             ccCCcceEEC-CCCCEEEEecCCCcccccccccccceEEEEeC---CCCeEEEEEeCCC-----C-------ccCcCeeE
Confidence            5799999995 7889998753            3467777763   3577777764321     1       14678999


Q ss_pred             cCCC-CEEEE
Q 029556          112 DMKG-NIYVA  120 (191)
Q Consensus       112 D~~G-~iyVa  120 (191)
                      +++| .|||+
T Consensus       539 spDg~tlfvn  548 (592)
T 3zwu_A          539 SPDQKTLFVG  548 (592)
T ss_dssp             CTTSSEEEEE
T ss_pred             CCCCCEEEEE
Confidence            9986 47776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	191
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	7e-07
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	1e-06

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.8 bits (107), Expect = 7e-07
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 96  GEPGSA--RFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
           GE G    +F +P   AV+ + +I VAD +NH I+   
Sbjct: 13  GEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFD 50

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.8 bits (104), Expect = 1e-06
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 99  GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDH 135
                + P + AVD    +YVAD+ N  + K+T+L+H
Sbjct: 219 PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 255

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	191
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.33
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.28
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.21
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.19
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.1
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.05
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.04
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.7
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.65
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.62
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.55
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.49
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.47
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.4
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.39
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.77
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.67
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.56
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.54
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.43
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.28
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.01
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	96.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	96.82
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	96.79
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	96.77
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	96.56
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	95.53
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	95.39
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.27
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	95.21
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.98
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.7
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	94.35
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.1
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	92.7
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	92.58
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	91.42
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.01
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	90.49
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	89.36
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	87.38
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	84.52
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	84.31

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.33  E-value=2.1e-12  Score=107.15  Aligned_cols=104  Identities=19%  Similarity=0.218  Sum_probs=72.6

Q ss_pred             CCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceE
Q 029556           30 DGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSF  109 (191)
Q Consensus        30 dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gI  109 (191)
                      ||..++.+.++.   ..|+||+++++++.|||+|+.+++|++++++  .++......+.... .     ....+..|+||
T Consensus       165 dg~~~~~~~~~~---~~pnGia~s~dg~~lyvad~~~~~I~~~d~~--~~g~~~~~~~~~~~-~-----~~~~~~~PdGl  233 (319)
T d2dg1a1         165 DFRTVTPIIQNI---SVANGIALSTDEKVLWVTETTANRLHRIALE--DDGVTIQPFGATIP-Y-----YFTGHEGPDSC  233 (319)
T ss_dssp             TSCCEEEEEEEE---SSEEEEEECTTSSEEEEEEGGGTEEEEEEEC--TTSSSEEEEEEEEE-E-----ECCSSSEEEEE
T ss_pred             ccceeEEEeecc---ceeeeeeeccccceEEEecccCCceEEEEEc--CCCceeccccceee-e-----ccCCccceeee
Confidence            444445544443   4899999976666799999999999999874  33321111110000 0     01123359999


Q ss_pred             EEcCCCCEEEEeCCCCEEEEEeCCCCCceEEEEeccCC
Q 029556          110 AVDMKGNIYVADKSNHVIRKITNLDHGNQLIRQINLKP  147 (191)
Q Consensus       110 avD~~G~iyVaD~~n~rIr~i~~~~~~~~~i~~i~~~~  147 (191)
                      ++|++|+||||++++++|+++++++   +.++.|.+|.
T Consensus       234 ~vD~~G~l~Va~~~~g~V~~~~p~G---~~l~~i~~P~  268 (319)
T d2dg1a1         234 CIDSDDNLYVAMYGQGRVLVFNKRG---YPIGQILIPG  268 (319)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTS---CEEEEEECTT
T ss_pred             eEcCCCCEEEEEcCCCEEEEECCCC---cEEEEEeCCC
Confidence            9999999999999999999999976   5778888774

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.28  E-value=8.9e-12  Score=99.90  Aligned_cols=74  Identities=22%  Similarity=0.318  Sum_probs=61.0

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~  123 (191)
                      +..|.+|+++ ++|+|||+|..+++|++++.    ++.......            ...|+.|.+|++|++|+|||||+.
T Consensus       181 ~~~p~gi~~d-~~g~l~vsd~~~~~i~~~~~----~~~~~~~~~------------~~~~~~P~~i~~d~~g~l~vad~~  243 (260)
T d1rwia_         181 ITAPWGIAVD-EAGTVYVTEHNTNQVVKLLA----GSTTSTVLP------------FTGLNTPLAVAVDSDRTVYVADRG  243 (260)
T ss_dssp             CCSEEEEEEC-TTCCEEEEETTTTEEEEECT----TCSCCEECC------------CCSCCCEEEEEECTTCCEEEEEGG
T ss_pred             cCCCccceee-eeeeeeeeecCCCEEEEEeC----CCCeEEEEc------------cCCCCCeEEEEEeCCCCEEEEECC
Confidence            5789999995 78999999999999999974    443333321            224779999999999999999999


Q ss_pred             CCEEEEEeCCC
Q 029556          124 NHVIRKITNLD  134 (191)
Q Consensus       124 n~rIr~i~~~~  134 (191)
                      |+||+||+..+
T Consensus       244 ~~rI~~i~~~~  254 (260)
T d1rwia_         244 NDRVVKLTSLE  254 (260)
T ss_dssp             GTEEEEECCCG
T ss_pred             CCEEEEEeCCC
Confidence            99999999854

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.21  E-value=1.6e-10  Score=94.77  Aligned_cols=119  Identities=12%  Similarity=0.118  Sum_probs=84.1

Q ss_pred             ecCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCC---ceEEEEecCCCccCCCCCCcccccC
Q 029556           28 LEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE---SVVKRLAGDGVQGYSDGEPGSARFD  104 (191)
Q Consensus        28 ~~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~---g~v~~~aG~~~~G~~DG~~~~a~f~  104 (191)
                      .++| .++.+.++.   ..|+++++++++..+|++|+.+++|++++++.+..   +....++-..           ....
T Consensus       135 ~~~g-~~~~~~~~~---~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~-----------~~~g  199 (295)
T d2ghsa1         135 VAKG-KVTKLFADI---SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-----------GIKG  199 (295)
T ss_dssp             EETT-EEEEEEEEE---SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-----------TSSS
T ss_pred             ecCC-cEEEEeecc---CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccC-----------cccc
Confidence            4455 455555443   48999999877778999999999999998753211   2222222110           1123


Q ss_pred             CCceEEEcCCCCEEEEeCCCCEEEEEeCCCCCceEEEEeccC---CCceEeccCCCCccEEEEE
Q 029556          105 KPKSFAVDMKGNIYVADKSNHVIRKITNLDHGNQLIRQINLK---PEDCSKSSQSGSGMFWVTV  165 (191)
Q Consensus       105 ~P~gIavD~~G~iyVaD~~n~rIr~i~~~~~~~~~i~~i~~~---~~~~~~~~~~g~~~~~~~~  165 (191)
                      .|.|+++|++|+||+|.+++++|.+++|++   +.++.+.+|   ++.|++... .+..+++.+
T Consensus       200 ~pdG~~vD~~GnlWva~~~~g~V~~~dp~G---~~~~~i~lP~~~~T~~~FGG~-d~~~LyvTt  259 (295)
T d2ghsa1         200 GMDGSVCDAEGHIWNARWGEGAVDRYDTDG---NHIARYEVPGKQTTCPAFIGP-DASRLLVTS  259 (295)
T ss_dssp             EEEEEEECTTSCEEEEEETTTEEEEECTTC---CEEEEEECSCSBEEEEEEEST-TSCEEEEEE
T ss_pred             cccceEEcCCCCEEeeeeCCCceEEecCCC---cEeeEecCCCCceEEEEEeCC-CCCEEEEEE
Confidence            699999999999999999999999999977   577778777   467888753 333566653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.19  E-value=6.6e-10  Score=89.58  Aligned_cols=95  Identities=15%  Similarity=0.224  Sum_probs=70.4

Q ss_pred             cCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCce
Q 029556           29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKS  108 (191)
Q Consensus        29 ~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~g  108 (191)
                      ++|-.+.++. .......|.+++++ +++++|++|..+++|++++.    +|+.....|.           +++++.|.|
T Consensus       142 ~~g~~~~~~g-~~~~~~~~~~i~~d-~~g~i~v~d~~~~~V~~~d~----~G~~~~~~g~-----------~g~~~~P~g  204 (279)
T d1q7fa_         142 QNGNVLHKFG-CSKHLEFPNGVVVN-DKQEIFISDNRAHCVKVFNY----EGQYLRQIGG-----------EGITNYPIG  204 (279)
T ss_dssp             TTSCEEEEEE-CTTTCSSEEEEEEC-SSSEEEEEEGGGTEEEEEET----TCCEEEEESC-----------TTTSCSEEE
T ss_pred             cCCceeeccc-ccccccccceeeec-cceeEEeeeccccceeeeec----CCceeeeecc-----------cccccCCcc
Confidence            3443444432 22346789999994 88999999999999999984    6765444432           346889999


Q ss_pred             EEEcCCCCEEEEeCC-CCEEEEEeCCCCCceEE
Q 029556          109 FAVDMKGNIYVADKS-NHVIRKITNLDHGNQLI  140 (191)
Q Consensus       109 IavD~~G~iyVaD~~-n~rIr~i~~~~~~~~~i  140 (191)
                      |++|++|+|||||.. |++|+++++++....++
T Consensus       205 iavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~  237 (279)
T d1q7fa_         205 VGINSNGEILIADNHNNFNLTIFTQDGQLISAL  237 (279)
T ss_dssp             EEECTTCCEEEEECSSSCEEEEECTTSCEEEEE
T ss_pred             cccccCCeEEEEECCCCcEEEEECCCCCEEEEE
Confidence            999999999999975 56899999877533333

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.10  E-value=6.9e-10  Score=89.46  Aligned_cols=75  Identities=8%  Similarity=0.092  Sum_probs=58.5

Q ss_pred             ccCCCCeeeEEEecCCCeEEEEeCCC-CeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEE
Q 029556           41 HQLEINPHSVIDRPGSSDLIVLDSSR-SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYV  119 (191)
Q Consensus        41 ~~~~~~P~gIav~d~~g~lyVaD~~n-~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyV  119 (191)
                      ...+..|++||+ |++|+|||+|..+ ++|.+++    ++|++....+.+           ..+..|++||++++|++||
T Consensus       196 ~g~~~~P~giav-D~~G~i~Vad~~~~~~v~~f~----~~G~~~~~~~~~-----------~~~~~p~~vav~~dG~l~V  259 (279)
T d1q7fa_         196 EGITNYPIGVGI-NSNGEILIADNHNNFNLTIFT----QDGQLISALESK-----------VKHAQCFDVALMDDGSVVL  259 (279)
T ss_dssp             TTTSCSEEEEEE-CTTCCEEEEECSSSCEEEEEC----TTSCEEEEEEES-----------SCCSCEEEEEEETTTEEEE
T ss_pred             cccccCCccccc-ccCCeEEEEECCCCcEEEEEC----CCCCEEEEEeCC-----------CCCCCEeEEEEeCCCcEEE
Confidence            345678999999 4889999999864 5799987    578754433321           1234799999999999999


Q ss_pred             EeCCCCEEEEEeC
Q 029556          120 ADKSNHVIRKITN  132 (191)
Q Consensus       120 aD~~n~rIr~i~~  132 (191)
                      +| .|++|+++.-
T Consensus       260 ~~-~n~~v~~fr~  271 (279)
T d1q7fa_         260 AS-KDYRLYIYRY  271 (279)
T ss_dssp             EE-TTTEEEEEEC
T ss_pred             Ee-CCCeEEEEEe
Confidence            99 5899999986

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.05  E-value=2.2e-09  Score=88.51  Aligned_cols=105  Identities=14%  Similarity=0.164  Sum_probs=71.1

Q ss_pred             CCeeeEEEecCCC----eEEEEeCCCCeEEEEecCCCCCceEE---EEecCCCccCCCCCCcccccCCCceEEEcCCCCE
Q 029556           45 INPHSVIDRPGSS----DLIVLDSSRSAFYTLSFPLSEESVVK---RLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNI  117 (191)
Q Consensus        45 ~~P~gIav~d~~g----~lyVaD~~n~~I~~~d~~~~~~g~v~---~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~i  117 (191)
                      ..|+||+++++++    .|||+|+.+++|++++++  .+|.+.   .++...      +    .....|.||++|++|+|
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~--~~g~~~~~~~~~~~~------~----~~~~~pdGiavD~~Gnl  239 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK--GPAKIENKKVWGHIP------G----THEGGADGMDFDEDNNL  239 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE--ETTEEEEEEEEEECC------C----CSSCEEEEEEEBTTCCE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeecc--CccccceeeEEEEcc------c----cccccceeeEEecCCcE
Confidence            4899999975433    599999999999999863  345432   222211      1    11235999999999999


Q ss_pred             EEEeCCCCEEEEEeCCCCCceEEEEeccC---CCceEeccCCCCccEEEEE
Q 029556          118 YVADKSNHVIRKITNLDHGNQLIRQINLK---PEDCSKSSQSGSGMFWVTV  165 (191)
Q Consensus       118 yVaD~~n~rIr~i~~~~~~~~~i~~i~~~---~~~~~~~~~~g~~~~~~~~  165 (191)
                      |||++++++|++++|+++...  ..+..+   ++.|++.+ .+ ..+++..
T Consensus       240 yVa~~~~g~I~~~dp~~g~~~--~~i~~p~~~~t~~afg~-d~-~~lyVt~  286 (314)
T d1pjxa_         240 LVANWGSSHIEVFGPDGGQPK--MRIRCPFEKPSNLHFKP-QT-KTIFVTE  286 (314)
T ss_dssp             EEEEETTTEEEEECTTCBSCS--EEEECSSSCEEEEEECT-TS-SEEEEEE
T ss_pred             EEEEcCCCEEEEEeCCCCEEE--EEEECCCCCEEEEEEeC-CC-CEEEEEE
Confidence            999999999999999765332  223333   45677743 23 2455553

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.04  E-value=1.5e-09  Score=86.56  Aligned_cols=79  Identities=20%  Similarity=0.263  Sum_probs=63.5

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~  123 (191)
                      +..|++|+++ +++++|++|..+++|++++.    ++.......            ...+..|.||++|++|+|||+|+.
T Consensus       139 ~~~p~~i~~~-~~g~~~v~~~~~~~i~~~d~----~~~~~~~~~------------~~~~~~p~gi~~d~~g~l~vsd~~  201 (260)
T d1rwia_         139 LNDPDGVAVD-NSGNVYVTDTDNNRVVKLEA----ESNNQVVLP------------FTDITAPWGIAVDEAGTVYVTEHN  201 (260)
T ss_dssp             CCSCCEEEEC-TTCCEEEEEGGGTEEEEECT----TTCCEEECC------------CSSCCSEEEEEECTTCCEEEEETT
T ss_pred             cCCcceeeec-CCCCEeeecccccccccccc----ccceeeeee------------ccccCCCccceeeeeeeeeeeecC
Confidence            4789999995 78899999999999999984    443333321            234678999999999999999999


Q ss_pred             CCEEEEEeCCCCCceE
Q 029556          124 NHVIRKITNLDHGNQL  139 (191)
Q Consensus       124 n~rIr~i~~~~~~~~~  139 (191)
                      +++|.++++.+...+.
T Consensus       202 ~~~i~~~~~~~~~~~~  217 (260)
T d1rwia_         202 TNQVVKLLAGSTTSTV  217 (260)
T ss_dssp             TTEEEEECTTCSCCEE
T ss_pred             CCEEEEEeCCCCeEEE
Confidence            9999999987654333

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.4e-07  Score=72.93  Aligned_cols=91  Identities=19%  Similarity=0.208  Sum_probs=67.5

Q ss_pred             cCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCc
Q 029556           29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPK  107 (191)
Q Consensus        29 ~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~  107 (191)
                      .||...+.+...  ....|+++++++.++.||++|..+++|.++++    +|. ...+...           ...+..|.
T Consensus       150 ~dGs~~~~l~~~--~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~----dG~~~~~~~~~-----------~~~~~~p~  212 (266)
T d1ijqa1         150 LNGVDIYSLVTE--NIQWPNGITLDLLSGRLYWVDSKLHSISSIDV----NGGNRKTILED-----------EKRLAHPF  212 (266)
T ss_dssp             TTSCCEEEEECS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEET----TSCSCEEEEEC-----------TTTTSSEE
T ss_pred             cCCCceeccccc--ccceeeEEEeeccccEEEEecCCcCEEEEEEC----CCCCEEEEEeC-----------CCcccccE
Confidence            366555555431  23589999998778899999999999999986    442 2333211           12356899


Q ss_pred             eEEEcCCCCEEEEeCCCCEEEEEeCCCCCc
Q 029556          108 SFAVDMKGNIYVADKSNHVIRKITNLDHGN  137 (191)
Q Consensus       108 gIavD~~G~iyVaD~~n~rIr~i~~~~~~~  137 (191)
                      +|+++ ++.||++|+.+++|.++++.++.+
T Consensus       213 ~lav~-~~~ly~td~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         213 SLAVF-EDKVFWTDIINEAIFSANRLTGSD  241 (266)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             EEEEE-CCEEEEEECCCCeEEEEECCCCcc
Confidence            99999 579999999999999999876543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.65  E-value=3.3e-07  Score=73.70  Aligned_cols=87  Identities=14%  Similarity=0.055  Sum_probs=65.7

Q ss_pred             cCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCc
Q 029556           29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPK  107 (191)
Q Consensus        29 ~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~  107 (191)
                      .||...+.+...  ....|.++++|+.++.||++|.+.++|.++++    +|. .+.++.              .+.+|.
T Consensus       153 ~dG~~~~~i~~~--~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~----~g~~~~~v~~--------------~~~~P~  212 (263)
T d1npea_         153 MDGTNRRILAQD--NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP----AQPGRRKVLE--------------GLQYPF  212 (263)
T ss_dssp             TTSCCCEEEECT--TCSCEEEEEEETTTTEEEEEETTTTEEEEEET----TEEEEEEEEE--------------CCCSEE
T ss_pred             CCCCCceeeeee--cccccceEEEeecCcEEEEEeCCCCEEEEEEC----CCCCeEEEEC--------------CCCCcE
Confidence            355444444321  23589999998778899999999999999986    554 444431              134799


Q ss_pred             eEEEcCCCCEEEEeCCCCEEEEEeCCCCC
Q 029556          108 SFAVDMKGNIYVADKSNHVIRKITNLDHG  136 (191)
Q Consensus       108 gIavD~~G~iyVaD~~n~rIr~i~~~~~~  136 (191)
                      +|+++ ++.||++|+.+++|.++++.++.
T Consensus       213 ~lav~-~~~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         213 AVTSY-GKNLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEE-CCEEEEEECCCCEEEEEECCCCc
Confidence            99999 58999999999999999997653

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=8.3e-07  Score=71.29  Aligned_cols=92  Identities=18%  Similarity=0.167  Sum_probs=66.8

Q ss_pred             cCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCC-ceEEEEecCCCccCCCCCCcccccCCCc
Q 029556           29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE-SVVKRLAGDGVQGYSDGEPGSARFDKPK  107 (191)
Q Consensus        29 ~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~-g~v~~~aG~~~~G~~DG~~~~a~f~~P~  107 (191)
                      .|+..+..+..+..   +|.+|+++..++.||++|..+++|++.+++.... +....+.             ...+..|.
T Consensus        17 l~~~~~~~~~~~~~---~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~-------------~~~~~~p~   80 (266)
T d1ijqa1          17 LDRSEYTSLIPNLR---NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------------SRDIQAPD   80 (266)
T ss_dssp             TTSCCCEEEECSCS---SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-------------CSSCSCCC
T ss_pred             CCCCcceeeeCCCC---ceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEE-------------eCCCCCcc
Confidence            36667777766544   8999999767889999999999999998632111 1122222             12356899


Q ss_pred             eEEEcC-CCCEEEEeCCCCEEEEEeCCCCC
Q 029556          108 SFAVDM-KGNIYVADKSNHVIRKITNLDHG  136 (191)
Q Consensus       108 gIavD~-~G~iyVaD~~n~rIr~i~~~~~~  136 (191)
                      |||+|. .++||++|..+++|.+++..+..
T Consensus        81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~  110 (266)
T d1ijqa1          81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVK  110 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred             eEEEeeccceEEEEecCCCEEEeEecCCce
Confidence            999996 58899999999999999986654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.55  E-value=2.2e-07  Score=75.02  Aligned_cols=68  Identities=9%  Similarity=0.094  Sum_probs=55.2

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCC
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH  125 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~  125 (191)
                      .|+++|++ ++|+||++|..+++|++++    ++|....++...              ..|.+++++++|++|++++.++
T Consensus        29 ~~e~iAv~-pdG~l~vt~~~~~~I~~i~----p~g~~~~~~~~~--------------~~~~gla~~~dG~l~v~~~~~~   89 (302)
T d2p4oa1          29 FLENLASA-PDGTIFVTNHEVGEIVSIT----PDGNQQIHATVE--------------GKVSGLAFTSNGDLVATGWNAD   89 (302)
T ss_dssp             CEEEEEEC-TTSCEEEEETTTTEEEEEC----TTCCEEEEEECS--------------SEEEEEEECTTSCEEEEEECTT
T ss_pred             CcCCEEEC-CCCCEEEEeCCCCEEEEEe----CCCCEEEEEcCC--------------CCcceEEEcCCCCeEEEecCCc
Confidence            69999995 7899999999999999997    477766665321              2588899999999999888888


Q ss_pred             EEEEEeC
Q 029556          126 VIRKITN  132 (191)
Q Consensus       126 rIr~i~~  132 (191)
                      .+.+++.
T Consensus        90 ~~~~~~~   96 (302)
T d2p4oa1          90 SIPVVSL   96 (302)
T ss_dssp             SCEEEEE
T ss_pred             eEEEEEe
Confidence            7777665

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.49  E-value=9.1e-07  Score=72.29  Aligned_cols=72  Identities=10%  Similarity=0.142  Sum_probs=55.6

Q ss_pred             CCCCeeeEEEecCCCeEEEEeCCCC------eEEEEecCCCCCc-eEEEEecCCCccCCCCCCcccccCCCceEEEcCCC
Q 029556           43 LEINPHSVIDRPGSSDLIVLDSSRS------AFYTLSFPLSEES-VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG  115 (191)
Q Consensus        43 ~~~~P~gIav~d~~g~lyVaD~~n~------~I~~~d~~~~~~g-~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G  115 (191)
                      ....|+++++ +++|++|++|..++      .+++++.    ++ .+..+..              .+..|+||+++++|
T Consensus       128 ~~~~~nd~~~-d~~G~l~vtd~~~~~~~~~g~v~~~~~----dg~~~~~~~~--------------~~~~pnGia~s~dg  188 (319)
T d2dg1a1         128 TAYCIDDMVF-DSKGGFYFTDFRGYSTNPLGGVYYVSP----DFRTVTPIIQ--------------NISVANGIALSTDE  188 (319)
T ss_dssp             SCCCEEEEEE-CTTSCEEEEECCCBTTBCCEEEEEECT----TSCCEEEEEE--------------EESSEEEEEECTTS
T ss_pred             cccCCcceeE-EeccceeecccccccccCcceeEEEec----ccceeEEEee--------------ccceeeeeeecccc
Confidence            3578999999 48999999998754      4777763    43 3444332              35689999999998


Q ss_pred             C-EEEEeCCCCEEEEEeCC
Q 029556          116 N-IYVADKSNHVIRKITNL  133 (191)
Q Consensus       116 ~-iyVaD~~n~rIr~i~~~  133 (191)
                      + +|++|+.+++|++++..
T Consensus       189 ~~lyvad~~~~~I~~~d~~  207 (319)
T d2dg1a1         189 KVLWVTETTANRLHRIALE  207 (319)
T ss_dssp             SEEEEEEGGGTEEEEEEEC
T ss_pred             ceEEEecccCCceEEEEEc
Confidence            6 99999999999999864

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.47  E-value=3.5e-06  Score=68.80  Aligned_cols=82  Identities=16%  Similarity=0.197  Sum_probs=59.2

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n  124 (191)
                      ..|.|++++++++.+||+|.. ++|.+++.    +|....++....    +    ..+|+.|+++++|++|++||+|...
T Consensus        71 g~P~Gl~~~~dg~~l~vad~~-~~i~~~~~----~g~~~~~~~~~~----~----g~~~~~pndl~~d~~G~lyvtd~~~  137 (314)
T d1pjxa_          71 GIPAGCQCDRDANQLFVADMR-LGLLVVQT----DGTFEEIAKKDS----E----GRRMQGCNDCAFDYEGNLWITAPAG  137 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETT-TEEEEEET----TSCEEECCSBCT----T----SCBCBCCCEEEECTTSCEEEEECBC
T ss_pred             CcceeEEEeCCCCEEEEEECC-CeEEEEeC----CCcEEEEEeccc----c----ccccCCCcEEEECCCCCEEEecCcc
Confidence            469999996444568999865 67999984    666555543321    1    2468899999999999999999653


Q ss_pred             ---------------CEEEEEeCCCCCceE
Q 029556          125 ---------------HVIRKITNLDHGNQL  139 (191)
Q Consensus       125 ---------------~rIr~i~~~~~~~~~  139 (191)
                                     ++|.++++++.....
T Consensus       138 ~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~  167 (314)
T d1pjxa_         138 EVAPADYTRSMQEKFGSIYCFTTDGQMIQV  167 (314)
T ss_dssp             BCTTSCCCBTTSSSCEEEEEECTTSCEEEE
T ss_pred             CcccccccceeccCCceEEEEeecCceeEe
Confidence                           478899886643333

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=1.5e-06  Score=69.79  Aligned_cols=79  Identities=11%  Similarity=0.037  Sum_probs=60.2

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcC-CCCEEEEeCCC
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM-KGNIYVADKSN  124 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~-~G~iyVaD~~n  124 (191)
                      .+.+|+++..++.||++|..+++|++.+++   .+..+++...             .+..|.+||+|. .++||++|..+
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~---g~~~~~v~~~-------------~~~~p~~iAvD~~~~~lY~~d~~~  100 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLH---GGEPTTIIRQ-------------DLGSPEGIALDHLGRTIFWTDSQL  100 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESS---SCCCEEEECT-------------TCCCEEEEEEETTTTEEEEEETTT
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcc---cCCcEEEEEe-------------ccccccEEEEeccCCeEEEeccCC
Confidence            466899976788999999999999999862   2233344321             234799999996 57899999999


Q ss_pred             CEEEEEeCCCCCceEE
Q 029556          125 HVIRKITNLDHGNQLI  140 (191)
Q Consensus       125 ~rIr~i~~~~~~~~~i  140 (191)
                      ++|.++++.+....++
T Consensus       101 ~~I~~~~~dg~~~~~l  116 (263)
T d1npea_         101 DRIEVAKMDGTQRRVL  116 (263)
T ss_dssp             TEEEEEETTSCSCEEE
T ss_pred             CEEEEEecCCceEEEE
Confidence            9999999976544333

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.39  E-value=1.1e-05  Score=64.56  Aligned_cols=77  Identities=12%  Similarity=-0.011  Sum_probs=61.6

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN  124 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n  124 (191)
                      ..|.+++++ ++|++||++..++.+.+++.+- .++....++...            ....|+++++|++|++|++|..+
T Consensus        68 ~~~~gla~~-~dG~l~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~------------~~~~~n~i~~~~~g~~~v~~~~~  133 (302)
T d2p4oa1          68 GKVSGLAFT-SNGDLVATGWNADSIPVVSLVK-SDGTVETLLTLP------------DAIFLNGITPLSDTQYLTADSYR  133 (302)
T ss_dssp             SEEEEEEEC-TTSCEEEEEECTTSCEEEEEEC-TTSCEEEEEECT------------TCSCEEEEEESSSSEEEEEETTT
T ss_pred             CCcceEEEc-CCCCeEEEecCCceEEEEEecc-cccceeeccccC------------CccccceeEEccCCCEEeecccc
Confidence            589999995 7899999999999988887532 345566555431            12368999999999999999999


Q ss_pred             CEEEEEeCCCC
Q 029556          125 HVIRKITNLDH  135 (191)
Q Consensus       125 ~rIr~i~~~~~  135 (191)
                      .+|.++++.++
T Consensus       134 ~~i~~~~~~~~  144 (302)
T d2p4oa1         134 GAIWLIDVVQP  144 (302)
T ss_dssp             TEEEEEETTTT
T ss_pred             ccceeeeccCC
Confidence            99999999765

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.90  E-value=8.2e-05  Score=61.61  Aligned_cols=85  Identities=13%  Similarity=0.073  Sum_probs=61.4

Q ss_pred             eccCccEEecCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCc
Q 029556           20 SLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPG   99 (191)
Q Consensus        20 ~~~~g~l~~~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~   99 (191)
                      ..+.+.+...++-..+.++++..   .|+||++++++..+||+++..++|++++++.+...+.......  +        
T Consensus       184 ~~~~g~v~~~~~~~~~~~~~~l~---~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l--~--------  250 (340)
T d1v04a_         184 GLAWSFVTYYSPNDVRVVAEGFD---FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF--D--------  250 (340)
T ss_dssp             TCCCEEEEEECSSCEEEEEEEES---SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC--S--------
T ss_pred             cCCceeEEEEcCCceEEEcCCCC---ccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecC--C--------
Confidence            56777776666667777777765   8999999877789999999999999998743222222222211  1        


Q ss_pred             ccccCCCceEEEcC-CCCEEEEe
Q 029556          100 SARFDKPKSFAVDM-KGNIYVAD  121 (191)
Q Consensus       100 ~a~f~~P~gIavD~-~G~iyVaD  121 (191)
                          ..|++|.+|+ +|.+|++-
T Consensus       251 ----~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         251 ----TLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             ----SEEEEEEECTTTCCEEEEE
T ss_pred             ----CCCCccEEecCCCEEEEEE
Confidence                2599999996 68999984

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.77  E-value=0.0011  Score=50.31  Aligned_cols=83  Identities=14%  Similarity=0.213  Sum_probs=61.2

Q ss_pred             CCeeeEEEecCCCeEEEEe--CCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEe
Q 029556           45 INPHSVIDRPGSSDLIVLD--SSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVAD  121 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD--~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD  121 (191)
                      ..|.++++++++..+|++.  ...++|+++|.   .++++......+              ..|.+++++++|. +||+.
T Consensus       200 ~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~---~t~~~~~~~~~~--------------~~~~~va~spdg~~l~va~  262 (301)
T d1l0qa2         200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT---GTNKITARIPVG--------------PDPAGIAVTPDGKKVYVAL  262 (301)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCCEEEEEET---TTTEEEEEEECC--------------SSEEEEEECTTSSEEEEEE
T ss_pred             CCcceeeccccccccccccccceeeeeeeeec---CCCeEEEEEcCC--------------CCEEEEEEeCCCCEEEEEE
Confidence            4799999987777888865  45578999985   455543322111              2589999999987 89999


Q ss_pred             CCCCEEEEEeCCCCCceEEEEeccC
Q 029556          122 KSNHVIRKITNLDHGNQLIRQINLK  146 (191)
Q Consensus       122 ~~n~rIr~i~~~~~~~~~i~~i~~~  146 (191)
                      ..+++|+.+|.+++  +.++.+.+.
T Consensus       263 ~~~~~i~v~D~~t~--~~~~~~~vg  285 (301)
T d1l0qa2         263 SFCNTVSVIDTATN--TITATMAVG  285 (301)
T ss_dssp             TTTTEEEEEETTTT--EEEEEEECS
T ss_pred             CCCCeEEEEECCCC--eEEEEEeCC
Confidence            99999999998765  556666544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.67  E-value=0.0015  Score=49.45  Aligned_cols=96  Identities=15%  Similarity=0.285  Sum_probs=66.3

Q ss_pred             eeeccCccEE---ecCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCCccC
Q 029556           18 LFSLVSSGLL---LEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGY   93 (191)
Q Consensus        18 ~~~~~~g~l~---~~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~   93 (191)
                      +++..++.+.   +..+-.+.++--|    .+|++++++|++..||+++..+++|+.+|.   .+++ +..+...     
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g----~~p~~va~spdG~~l~v~~~~~~~i~v~d~---~t~~~~~~~~~~-----   73 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG----SNPMGAVISPDGTKVYVANAHSNDVSIIDT---ATNNVIATVPAG-----   73 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEEGGGTEEEEEET---TTTEEEEEEECS-----
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC----CCceEEEEeCCCCEEEEEECCCCEEEEEEC---CCCceeeeeecc-----
Confidence            4455666663   3345333343222    479999998666679999999999999996   3454 3333211     


Q ss_pred             CCCCCcccccCCCceEEEcCCCC-EEEEeCCCCEEEEEeCCCC
Q 029556           94 SDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNLDH  135 (191)
Q Consensus        94 ~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~n~rIr~i~~~~~  135 (191)
                                ..|.+++++++|. ++++...+..++..+..+.
T Consensus        74 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (301)
T d1l0qa2          74 ----------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN  106 (301)
T ss_dssp             ----------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             ----------ccccccccccccccccccccccceeeecccccc
Confidence                      2588999999876 7788888888888887554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=0.0011  Score=51.05  Aligned_cols=78  Identities=12%  Similarity=0.087  Sum_probs=56.5

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~  123 (191)
                      ..|++|+++|++..||++....++|+.++++  .++......+..           ..-..|.+++++++|+ +|+++..
T Consensus        37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~--~~~~~~~~~~~~-----------~~~~~p~~l~~spDg~~l~v~~~~  103 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA--PDDGALTFAAES-----------ALPGSLTHISTDHQGQFVFVGSYN  103 (333)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEEC--TTTCCEEEEEEE-----------ECSSCCSEEEECTTSSEEEEEETT
T ss_pred             CCEeEEEEeCCCCEEEEEECCCCeEEEEEEe--CCCCcEEEeeec-----------ccCCCceEEEEcCCCCEEeecccC
Confidence            4799999987777899999999999988763  222222222110           0113699999999987 9999999


Q ss_pred             CCEEEEEeCCCC
Q 029556          124 NHVIRKITNLDH  135 (191)
Q Consensus       124 n~rIr~i~~~~~  135 (191)
                      +..|+.++.++.
T Consensus       104 ~~~v~~~~~~~~  115 (333)
T d1ri6a_         104 AGNVSVTRLEDG  115 (333)
T ss_dssp             TTEEEEEEEETT
T ss_pred             CCceeeeccccc
Confidence            999988877554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.54  E-value=0.00052  Score=56.31  Aligned_cols=80  Identities=18%  Similarity=0.206  Sum_probs=59.5

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~  123 (191)
                      .+|++++++|++..+|++|.+.++|+.++.+  .+|............  .|       ..|.+++++++|. +|++...
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~--~~g~~~~~~~~~~~~--~g-------~gPr~i~f~pdg~~~yv~~e~  213 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKL--ASGEVELVGSVDAPD--PG-------DHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEEC--TTSCEEEEEEEECSS--TT-------CCEEEEEECTTSSEEEEEETT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEcc--CCCceeeccceeecC--CC-------CceEEEEECCCCceEEEeccC
Confidence            5789999987777899999999999998753  455544332211100  11       3699999999986 8999999


Q ss_pred             CCEEEEEeCCCC
Q 029556          124 NHVIRKITNLDH  135 (191)
Q Consensus       124 n~rIr~i~~~~~  135 (191)
                      .+.|..++.+++
T Consensus       214 ~~~V~v~~~~~~  225 (365)
T d1jofa_         214 GNRICEYVIDPA  225 (365)
T ss_dssp             TTEEEEEEECTT
T ss_pred             CCEEEEEEecCC
Confidence            999999887554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.43  E-value=0.00095  Score=54.93  Aligned_cols=102  Identities=18%  Similarity=0.262  Sum_probs=64.7

Q ss_pred             CCCCeeeEEEecCCCeEEEEeCCC-----------------CeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCC
Q 029556           43 LEINPHSVIDRPGSSDLIVLDSSR-----------------SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDK  105 (191)
Q Consensus        43 ~~~~P~gIav~d~~g~lyVaD~~n-----------------~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~  105 (191)
                      ....|++|++. .++.+|+++...                 ..+++++     .+..+..+              ..+..
T Consensus       148 ~~~~pNDv~~~-~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~-----~~~~~~~~--------------~~l~~  207 (340)
T d1v04a_         148 LLPSVNDIVAV-GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS-----PNDVRVVA--------------EGFDF  207 (340)
T ss_dssp             TCSSEEEEEEE-ETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC-----SSCEEEEE--------------EEESS
T ss_pred             cccCccceEEe-cCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc-----CCceEEEc--------------CCCCc
Confidence            35789999996 788999996432                 2233332     12222222              23668


Q ss_pred             CceEEEcCCC-CEEEEeCCCCEEEEEeCCCCC-ceEEEEeccC--CCceEeccCCCCccEEEEEe
Q 029556          106 PKSFAVDMKG-NIYVADKSNHVIRKITNLDHG-NQLIRQINLK--PEDCSKSSQSGSGMFWVTVF  166 (191)
Q Consensus       106 P~gIavD~~G-~iyVaD~~n~rIr~i~~~~~~-~~~i~~i~~~--~~~~~~~~~~g~~~~~~~~~  166 (191)
                      |+||++++++ .+|||++..++|++++..+.. .+....+.++  ++......  .-|.+|+++.
T Consensus       208 pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~--~~g~lwva~~  270 (340)
T d1v04a_         208 ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDP--VTGDLWVGCH  270 (340)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECT--TTCCEEEEEE
T ss_pred             cceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEec--CCCEEEEEEC
Confidence            9999999986 599999999999999875433 2344445555  33343322  2345777754

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.28  E-value=0.0021  Score=51.16  Aligned_cols=73  Identities=10%  Similarity=-0.097  Sum_probs=56.6

Q ss_pred             eeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCCEE
Q 029556           48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVI  127 (191)
Q Consensus        48 ~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~rI  127 (191)
                      +|..+++.++.||++|..+++|+++++   .++..+.+.-.               ..|.+++.+++|+++++..  +.|
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~---~~g~~~~~~~~---------------~~~~~i~~~~dg~l~va~~--~gl   80 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHL---ASGRKTVHALP---------------FMGSALAKISDSKQLIASD--DGL   80 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEET---TTTEEEEEECS---------------SCEEEEEEEETTEEEEEET--TEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEEC---CCCeEEEEECC---------------CCcEEEEEecCCCEEEEEe--Ccc
Confidence            888897779999999999999999985   45666655311               1477899999999999964  579


Q ss_pred             EEEeCCCCCceEE
Q 029556          128 RKITNLDHGNQLI  140 (191)
Q Consensus       128 r~i~~~~~~~~~i  140 (191)
                      .+++++++..+.+
T Consensus        81 ~~~d~~tg~~~~l   93 (295)
T d2ghsa1          81 FLRDTATGVLTLH   93 (295)
T ss_dssp             EEEETTTCCEEEE
T ss_pred             EEeecccceeeEE
Confidence            9999876544444

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.01  E-value=0.014  Score=44.45  Aligned_cols=80  Identities=15%  Similarity=0.200  Sum_probs=54.6

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeC-
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK-  122 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~-  122 (191)
                      ..|.+++++|++..+||+...+++|+.+|.   .+++.........       ........|.+++++++|. +|++.. 
T Consensus        40 ~~p~~l~~spDG~~l~v~~~~~~~v~~~d~---~t~~~~~~~~~~~-------~~~~~~~~~~~v~~s~DG~~l~v~~~~  109 (346)
T d1jmxb_          40 FGPGTAMMAPDNRTAYVLNNHYGDIYGIDL---DTCKNTFHANLSS-------VPGEVGRSMYSFAISPDGKEVYATVNP  109 (346)
T ss_dssp             CSSCEEEECTTSSEEEEEETTTTEEEEEET---TTTEEEEEEESCC-------STTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred             CCcceEEECCCCCEEEEEECCCCcEEEEeC---ccCeeeeeecccc-------cccccCCceEEEEEecCCCEEEEEecC
Confidence            379999998767789999999999999996   3555433221111       1123445799999999985 888753 


Q ss_pred             ----------CCCEEEEEeCCC
Q 029556          123 ----------SNHVIRKITNLD  134 (191)
Q Consensus       123 ----------~n~rIr~i~~~~  134 (191)
                                ....++.++.+.
T Consensus       110 ~~~~~~~~~~~~~~i~~~~~~~  131 (346)
T d1jmxb_         110 TQRLNDHYVVKPPRLEVFSTAD  131 (346)
T ss_dssp             EEECSSCEEECCCEEEEEEGGG
T ss_pred             CcceeeeeccCcceEEEEeccc
Confidence                      345566666543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.012  Score=44.96  Aligned_cols=88  Identities=18%  Similarity=0.170  Sum_probs=58.4

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~  123 (191)
                      ..|.++++++++..+|++....+.+..++.+  .++......+...           .-..|.+++++++|. +|++...
T Consensus       230 ~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----------~~~~p~~~a~spDGk~l~va~~~  296 (333)
T d1ri6a_         230 RWAADIHITPDGRHLYACDRTASLITVFSVS--EDGSVLSKEGFQP-----------TETQPRGFNVDHSGKYLIAAGQK  296 (333)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEEC--TTSCCEEEEEEEE-----------CSSSCCCEEECTTSSEEEEECTT
T ss_pred             ccceeEEEecccCceeeecccCCeEEEEEEc--CCCCEEEEEEEeC-----------CCCCeeEEEEeCCCCEEEEEECC
Confidence            5678899986777899999888888877653  3333333322110           112699999999997 8999887


Q ss_pred             CCEEEEE--eCCCCCceEEEEecc
Q 029556          124 NHVIRKI--TNLDHGNQLIRQINL  145 (191)
Q Consensus       124 n~rIr~i--~~~~~~~~~i~~i~~  145 (191)
                      .+.|+.+  |.+.+..+.+..+..
T Consensus       297 ~~~v~v~~id~~tG~l~~~~~~~~  320 (333)
T d1ri6a_         297 SHHISVYEIVGEQGLLHEKGRYAV  320 (333)
T ss_dssp             TCEEEEEEEETTTTEEEEEEEEEC
T ss_pred             CCeEEEEEEECCCCcEEEEEeccC
Confidence            7877764  666543444444443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.82  E-value=0.059  Score=40.53  Aligned_cols=81  Identities=7%  Similarity=0.012  Sum_probs=54.3

Q ss_pred             CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeC
Q 029556           44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK  122 (191)
Q Consensus        44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~  122 (191)
                      ...|.+++++|++..+||+...++.|..+|.   .+++.........        .......|.++++.++|. +|++..
T Consensus        33 ~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~---~t~~~~~~~~~~~--------~~~~~~~~~~v~~s~dg~~l~~~~~  101 (337)
T d1pbyb_          33 GPTPMVPMVAPGGRIAYATVNKSESLVKIDL---VTGETLGRIDLST--------PEERVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             TTCCCCEEECTTSSEEEEEETTTTEEEEEET---TTCCEEEEEECCB--------TTEEEECTTCEEECTTSSEEEEEEE
T ss_pred             CCCccEEEECCCCCEEEEEECCCCeEEEEEC---CCCcEEEEEecCC--------CcccccceeeEEEcCCCcEEEEeec
Confidence            4579999998666678999999999999996   4565444332211        122345788999999875 666643


Q ss_pred             -----------CCCEEEEEeCCCC
Q 029556          123 -----------SNHVIRKITNLDH  135 (191)
Q Consensus       123 -----------~n~rIr~i~~~~~  135 (191)
                                 ...++..++....
T Consensus       102 ~~~~~~~~~~~~~~~~~~~d~~~~  125 (337)
T d1pbyb_         102 PVRLELTHFEVQPTRVALYDAETL  125 (337)
T ss_dssp             EEEECSSCEEECCCEEEEEETTTT
T ss_pred             CCcceeeeccccccceeeccccCC
Confidence                       2345666666543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.79  E-value=0.0068  Score=51.32  Aligned_cols=80  Identities=14%  Similarity=0.239  Sum_probs=58.5

Q ss_pred             cCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCc-cCCCCCCcccccCCCc
Q 029556           29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQ-GYSDGEPGSARFDKPK  107 (191)
Q Consensus        29 ~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~-G~~DG~~~~a~f~~P~  107 (191)
                      .++|.++++++|..   +|.+|++. ++++|||++...++|++++.   .++..+.+.+.... ...+|      -..-.
T Consensus        14 ~~~f~~~~ia~~L~---~P~~la~~-pdg~llVter~~G~i~~v~~---~~g~~~~i~~~~~~~~~~~g------e~GLL   80 (450)
T d1crua_          14 SENFDKKVILSNLN---KPHALLWG-PDNQIWLTERATGKILRVNP---ESGSVKTVFQVPEIVNDADG------QNGLL   80 (450)
T ss_dssp             CTTSCEEEEECCCS---SEEEEEEC-TTSCEEEEETTTCEEEEECT---TTCCEEEEEECTTCCCCTTS------SCSEE
T ss_pred             cCCcEEEEEECCCC---CceEEEEe-CCCeEEEEEecCCEEEEEEC---CCCcEeecccCCccccccCC------CCcee
Confidence            46889999999866   99999995 78999999998899999974   46777777765321 11111      11345


Q ss_pred             eEEEcCC----CCEEEEe
Q 029556          108 SFAVDMK----GNIYVAD  121 (191)
Q Consensus       108 gIavD~~----G~iyVaD  121 (191)
                      |||+|++    +.+|++-
T Consensus        81 gia~~Pdf~~n~~iYvsy   98 (450)
T d1crua_          81 GFAFHPDFKNNPYIYISG   98 (450)
T ss_dssp             EEEECTTTTTSCEEEEEE
T ss_pred             eEEeCCCCccCCEEEEEE
Confidence            7999874    7799863

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=96.77  E-value=0.0048  Score=50.23  Aligned_cols=92  Identities=2%  Similarity=-0.030  Sum_probs=62.1

Q ss_pred             CeeeEEEecCCCeEEEEeCCCCe-----EEEEecCCCCCceEEEE---ecCCCccCCCCCCcccccCCCceEEEcC-CCC
Q 029556           46 NPHSVIDRPGSSDLIVLDSSRSA-----FYTLSFPLSEESVVKRL---AGDGVQGYSDGEPGSARFDKPKSFAVDM-KGN  116 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~n~~-----I~~~d~~~~~~g~v~~~---aG~~~~G~~DG~~~~a~f~~P~gIavD~-~G~  116 (191)
                      .|..++++|++..+|++..+.+.     |..++.+  .+|.+...   .....           .-.+|.++++++ +|.
T Consensus       256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~--~~g~~~~~~~~~~~~~-----------~G~~p~~i~~~p~~G~  322 (365)
T d1jofa_         256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLR--DCGSIEKQLFLSPTPT-----------SGGHSNAVSPCPWSDE  322 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC--TTSCEEEEEEEEECSS-----------CCTTCCCEEECTTCTT
T ss_pred             CccceEECCCCCEEEEEcccCCCccceEEEEEEec--CCCceeeEeEeeEEEc-----------CCCCccEEEecCCCCC
Confidence            46789998778889999765433     5555542  34443322   21111           123799999996 676


Q ss_pred             -EEEEeCCCCEEEEEeCCCCCceEEEEeccCCCce
Q 029556          117 -IYVADKSNHVIRKITNLDHGNQLIRQINLKPEDC  150 (191)
Q Consensus       117 -iyVaD~~n~rIr~i~~~~~~~~~i~~i~~~~~~~  150 (191)
                       ||+++...+.|..++..+.....+..+.++...|
T Consensus       323 ~l~va~~~s~~v~v~~~~~~~l~~~~~~~vp~p~~  357 (365)
T d1jofa_         323 WMAITDDQEGWLEIYRWKDEFLHRVARVRIPEPGF  357 (365)
T ss_dssp             EEEEECSSSCEEEEEEEETTEEEEEEEEECCSTTE
T ss_pred             EEEEEeCCCCeEEEEEEeCCcCcEEEEEECCCCCC
Confidence             9999999999998877666556677777775555

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=96.56  E-value=0.014  Score=44.38  Aligned_cols=71  Identities=10%  Similarity=0.047  Sum_probs=48.6

Q ss_pred             eEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCCCCEE
Q 029556           49 SVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVI  127 (191)
Q Consensus        49 gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~n~rI  127 (191)
                      |+|++ ++++.+++-...+.|..+|+   .++++......+     ++       ..|.+++++++|. +|++...+++|
T Consensus         1 g~a~~-~~~~~l~~~~~~~~v~v~D~---~t~~~~~t~~~~-----~~-------~~p~~l~~spDG~~l~v~~~~~~~v   64 (346)
T d1jmxb_           1 GPALK-AGHEYMIVTNYPNNLHVVDV---ASDTVYKSCVMP-----DK-------FGPGTAMMAPDNRTAYVLNNHYGDI   64 (346)
T ss_dssp             CCCCC-TTCEEEEEEETTTEEEEEET---TTTEEEEEEECS-----SC-------CSSCEEEECTTSSEEEEEETTTTEE
T ss_pred             CccCC-CCCcEEEEEcCCCEEEEEEC---CCCCEEEEEEcC-----CC-------CCcceEEECCCCCEEEEEECCCCcE
Confidence            45665 56666666566678999886   345543222110     01       1589999999986 79999999999


Q ss_pred             EEEeCCCC
Q 029556          128 RKITNLDH  135 (191)
Q Consensus       128 r~i~~~~~  135 (191)
                      +.++....
T Consensus        65 ~~~d~~t~   72 (346)
T d1jmxb_          65 YGIDLDTC   72 (346)
T ss_dssp             EEEETTTT
T ss_pred             EEEeCccC
Confidence            99998664

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.53  E-value=0.041  Score=43.41  Aligned_cols=87  Identities=11%  Similarity=0.130  Sum_probs=58.2

Q ss_pred             eeeEEEecCCCeEEEEeCCC--------CeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC--
Q 029556           47 PHSVIDRPGSSDLIVLDSSR--------SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN--  116 (191)
Q Consensus        47 P~gIav~d~~g~lyVaD~~n--------~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~--  116 (191)
                      ++.++++++.+.+|++....        .+|+.+|.   .+++.......              -..|.++++.++|+  
T Consensus       266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~---~t~~~~~~~~~--------------~~~~~~~a~spDG~~~  328 (368)
T d1mdah_         266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA---SVGQTSGPISN--------------GHDSDAIIAAQDGASD  328 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES---SSCCEEECCEE--------------EEEECEEEECCSSSCE
T ss_pred             ceeEEEcCCCCEEEEEecCCCceeecCCceEEEEEC---CCCcEeEEecC--------------CCceeEEEECCCCCEE
Confidence            46788887788888875333        35666764   23332211110              02588999999986  


Q ss_pred             EEEEeCCCCEEEEEeCCCCCceEEEEeccC--CCceEe
Q 029556          117 IYVADKSNHVIRKITNLDHGNQLIRQINLK--PEDCSK  152 (191)
Q Consensus       117 iyVaD~~n~rIr~i~~~~~~~~~i~~i~~~--~~~~~~  152 (191)
                      +|++....+.|+.+|.+++  +.++.+.++  |+..+.
T Consensus       329 ly~s~~~~~~v~v~D~~tg--k~~~~i~~g~~P~~l~~  364 (368)
T d1mdah_         329 NYANSAGTEVLDIYDAASD--QDQSSVELDKGPESLSV  364 (368)
T ss_dssp             EEEEETTTTEEEEEESSSC--EEEEECCCCSCCCEEEC
T ss_pred             EEEEeCCCCeEEEEECCCC--CEEEEEECCCCCCEEEE
Confidence            8999999999999998765  567777765  444443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.39  E-value=0.17  Score=37.84  Aligned_cols=39  Identities=21%  Similarity=0.280  Sum_probs=30.8

Q ss_pred             CCceEEEcCCCC-EEEEeCCCCEEEEEeCCCCCceEEEEecc
Q 029556          105 KPKSFAVDMKGN-IYVADKSNHVIRKITNLDHGNQLIRQINL  145 (191)
Q Consensus       105 ~P~gIavD~~G~-iyVaD~~n~rIr~i~~~~~~~~~i~~i~~  145 (191)
                      .|.+++++++|. +|++...++.|+.+|...+  +.++.+..
T Consensus        35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~--~~~~~~~~   74 (337)
T d1pbyb_          35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--ETLGRIDL   74 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTC--CEEEEEEC
T ss_pred             CccEEEECCCCCEEEEEECCCCeEEEEECCCC--cEEEEEec
Confidence            689999999986 7899988999999998764  34444443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.27  E-value=0.2  Score=41.02  Aligned_cols=81  Identities=10%  Similarity=0.087  Sum_probs=56.1

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEc----CCCCEEEE
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVD----MKGNIYVA  120 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD----~~G~iyVa  120 (191)
                      ..++|+++||.++.|||++.. -.|++++.+.+.......+....      |   ..-...|.||++=    .+|.|.++
T Consensus       180 ~q~EGCVvDde~~~LyisEE~-~Giw~~~a~~~~~~~~~~i~~~~------g---~~l~~D~EGlaiy~~~~~~GylivS  249 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAEED-EAIWKFSAEPDGGSNGTVIDRAD------G---RHLTPDIEGLTIYYAADGKGYLLAS  249 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEETT-TEEEEEESSTTSCSCCEEEEECS------S---SSCCSCEEEEEEEECGGGCEEEEEE
T ss_pred             CccceEEEeCCCCcEEEecCc-cceEEEEeccCCCccceeeeccc------C---ccccCCccccEEEEcCCCCeEEEEE
Confidence            579999999889999999975 58999987533222222222111      1   0112368899864    35789999


Q ss_pred             eCCCCEEEEEeCCCC
Q 029556          121 DKSNHVIRKITNLDH  135 (191)
Q Consensus       121 D~~n~rIr~i~~~~~  135 (191)
                      +.++++...++....
T Consensus       250 sQG~n~f~vydr~~~  264 (353)
T d1h6la_         250 SQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EGGGTEEEEEESSTT
T ss_pred             cCCCCeEEEEecCCC
Confidence            999999999998653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=95.21  E-value=0.1  Score=44.00  Aligned_cols=68  Identities=13%  Similarity=0.163  Sum_probs=47.6

Q ss_pred             CCeeeEEE--ecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEe
Q 029556           45 INPHSVID--RPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVAD  121 (191)
Q Consensus        45 ~~P~gIav--~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD  121 (191)
                      .+|+....  ++++..+||+|..++||-++|+   .+++...+...+.            ...|+|+++.++|+ .||+.
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl---~t~k~~~ii~iP~------------g~gphgi~~spdg~t~YV~~  134 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRL---DIMKTDKITHIPN------------VQAIHGLRLQKVPKTNYVFC  134 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEET---TTTEEEEEEECTT------------CCCEEEEEECCSSBCCEEEE
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEEC---CCCcEeeEEecCC------------CCCccceEEeccCCEEEEEe
Confidence            46766665  3557789999999999999996   3555544443211            12699999999876 78886


Q ss_pred             CCCCEE
Q 029556          122 KSNHVI  127 (191)
Q Consensus       122 ~~n~rI  127 (191)
                      ...+.+
T Consensus       135 ~~~~~v  140 (441)
T d1qnia2         135 NAEFVI  140 (441)
T ss_dssp             EECSCE
T ss_pred             ccCCcc
Confidence            555544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.98  E-value=0.36  Score=38.67  Aligned_cols=99  Identities=8%  Similarity=-0.028  Sum_probs=59.7

Q ss_pred             eeeeccCccEEe---cCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccC
Q 029556           17 LLFSLVSSGLLL---EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGY   93 (191)
Q Consensus        17 ~~~~~~~g~l~~---~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~   93 (191)
                      +++...++.+++   ..+-.+.++-.|    ..|++++++|++..+|++... +.|+.+|.+   .++....+-.     
T Consensus        35 ~V~~~~dg~v~vwD~~t~~~~~~l~~g----~~~~~vafSPDGk~l~~~~~d-~~v~vwd~~---t~~~~~~~~i-----  101 (426)
T d1hzua2          35 SVTLRDAGQIALVDGDSKKIVKVIDTG----YAVHISRMSASGRYLLVIGRD-ARIDMIDLW---AKEPTKVAEI-----  101 (426)
T ss_dssp             EEEETTTTEEEEEETTTCSEEEEEECC----SSEEEEEECTTSCEEEEEETT-SEEEEEETT---SSSCEEEEEE-----
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeCC----CCeeEEEECCCCCEEEEEeCC-CCEEEEEcc---CCceeEEEEE-----
Confidence            355566777743   344445555433    379999999777788888754 688888862   3332221100     


Q ss_pred             CCCCCcccccCCCceEEEc----CCCC-EEEEeCCCCEEEEEeCCCC
Q 029556           94 SDGEPGSARFDKPKSFAVD----MKGN-IYVADKSNHVIRKITNLDH  135 (191)
Q Consensus        94 ~DG~~~~a~f~~P~gIavD----~~G~-iyVaD~~n~rIr~i~~~~~  135 (191)
                             .....|.+++++    ++|. ++++...++.++.++.+..
T Consensus       102 -------~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~  141 (426)
T d1hzua2         102 -------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  141 (426)
T ss_dssp             -------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             -------eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc
Confidence                   001134555554    3565 6788877888888887554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.70  E-value=0.7  Score=37.45  Aligned_cols=98  Identities=7%  Similarity=-0.116  Sum_probs=61.3

Q ss_pred             eeeeccCccEEec---CCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce--EEEEecCCCc
Q 029556           17 LLFSLVSSGLLLE---DGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV--VKRLAGDGVQ   91 (191)
Q Consensus        17 ~~~~~~~g~l~~~---dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~--v~~~aG~~~~   91 (191)
                      +++.-.++.+.+=   -+-...++-.|    ..|++++++|++..+|++.. .+.|+.+|+.   +++  ...-...   
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g----~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~---t~~~~~~~~i~~---  103 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGR-DGKVNMIDLW---MKEPTTVAEIKI---  103 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEET-TSEEEEEETT---SSSCCEEEEEEC---
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeCC----CCeeEEEECCCCCEEEEEcC-CCCEEEEEee---CCCceEEEEEec---
Confidence            4556667777433   23244444333    36999999987888998865 4688888862   222  1111111   


Q ss_pred             cCCCCCCcccccCCCceEEEc----CCCC-EEEEeCCCCEEEEEeCCCCC
Q 029556           92 GYSDGEPGSARFDKPKSFAVD----MKGN-IYVADKSNHVIRKITNLDHG  136 (191)
Q Consensus        92 G~~DG~~~~a~f~~P~gIavD----~~G~-iyVaD~~n~rIr~i~~~~~~  136 (191)
                                 ...|.++++.    ++|. +|++....+.|+.++.+++.
T Consensus       104 -----------~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~  142 (432)
T d1qksa2         104 -----------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE  142 (432)
T ss_dssp             -----------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             -----------CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc
Confidence                       1245666654    4676 78998889999999987653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.35  E-value=0.47  Score=36.91  Aligned_cols=78  Identities=5%  Similarity=-0.130  Sum_probs=52.3

Q ss_pred             eEEEecCCCeEEEEeCC---------CCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EE
Q 029556           49 SVIDRPGSSDLIVLDSS---------RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IY  118 (191)
Q Consensus        49 gIav~d~~g~lyVaD~~---------n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iy  118 (191)
                      .++++|++..||++...         .+.|+.+|.   .+++....+....     + ........|.++++.++|. +|
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~---~t~~~~~~i~~p~-----~-~~~~~g~~p~~~a~SpDGk~l~  139 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP---VTFLPIADIELPD-----A-PRFSVGPRVHIIGNCASSACLL  139 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT---TTCCEEEEEEETT-----S-CSCCBSCCTTSEEECTTSSCEE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEEC---CCCcEeeeecCCc-----c-ceecccCCccceEECCCCCEEE
Confidence            68998778889998742         345888875   3444333322110     0 0011234799999999985 99


Q ss_pred             EEeCCCCEEEEEeCCCC
Q 029556          119 VADKSNHVIRKITNLDH  135 (191)
Q Consensus       119 VaD~~n~rIr~i~~~~~  135 (191)
                      +++...+.|+.++.++.
T Consensus       140 va~~~~~~v~~~d~~~~  156 (368)
T d1mdah_         140 FFLFGSSAAAGLSVPGA  156 (368)
T ss_dssp             EEECSSSCEEEEEETTT
T ss_pred             EEeCCCCeEEEEECCCC
Confidence            99988889999998765

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.10  E-value=0.033  Score=46.85  Aligned_cols=41  Identities=12%  Similarity=0.296  Sum_probs=35.9

Q ss_pred             cCCCceEEEcCCCCEEEEeCCCCEEEEEeCCCCCceEEEEe
Q 029556          103 FDKPKSFAVDMKGNIYVADKSNHVIRKITNLDHGNQLIRQI  143 (191)
Q Consensus       103 f~~P~gIavD~~G~iyVaD~~n~rIr~i~~~~~~~~~i~~i  143 (191)
                      |..|.+|++.++|.|||++...++|+++++.++..+.+.++
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~   66 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQV   66 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccC
Confidence            77999999999999999998889999999887766666664

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=92.70  E-value=1.1  Score=34.08  Aligned_cols=38  Identities=11%  Similarity=0.133  Sum_probs=30.0

Q ss_pred             CCceEEEcCCCC--EEEEeCCCCEEEEEeCCCCCceEEEEec
Q 029556          105 KPKSFAVDMKGN--IYVADKSNHVIRKITNLDHGNQLIRQIN  144 (191)
Q Consensus       105 ~P~gIavD~~G~--iyVaD~~n~rIr~i~~~~~~~~~i~~i~  144 (191)
                      .|.++++.++|+  +|++....+.|+.+|.+.+  +.++.+.
T Consensus       319 ~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg--~~~~~~~  358 (373)
T d2madh_         319 DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG--DQDQSTV  358 (373)
T ss_pred             CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC--CEEEEEC
Confidence            588999999987  7889999999999998765  3444443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.58  E-value=0.46  Score=38.00  Aligned_cols=80  Identities=13%  Similarity=0.101  Sum_probs=54.5

Q ss_pred             CeeeEEEec-CCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeC
Q 029556           46 NPHSVIDRP-GSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADK  122 (191)
Q Consensus        46 ~P~gIav~d-~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~  122 (191)
                      .|..+.++. ..+.++|+...+++|+.+|.   .+++ +..+.+ +              ..|+++++.++|. +|++..
T Consensus        20 ~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~---~t~~~~~~l~~-g--------------~~~~~vafSPDGk~l~~~~~   81 (426)
T d1hzua2          20 RPKKQLNDLDLPNLFSVTLRDAGQIALVDG---DSKKIVKVIDT-G--------------YAVHISRMSASGRYLLVIGR   81 (426)
T ss_dssp             SCSSCCSCCCGGGEEEEEETTTTEEEEEET---TTCSEEEEEEC-C--------------SSEEEEEECTTSCEEEEEET
T ss_pred             CCCcccccCCCCeEEEEEEcCCCEEEEEEC---CCCcEEEEEeC-C--------------CCeeEEEECCCCCEEEEEeC
Confidence            455555532 24456799999999999986   3454 444432 1              1589999999987 778875


Q ss_pred             CCCEEEEEeCCCCCceEEEEec
Q 029556          123 SNHVIRKITNLDHGNQLIRQIN  144 (191)
Q Consensus       123 ~n~rIr~i~~~~~~~~~i~~i~  144 (191)
                       .+.|+.++........+.++.
T Consensus        82 -d~~v~vwd~~t~~~~~~~~i~  102 (426)
T d1hzua2          82 -DARIDMIDLWAKEPTKVAEIK  102 (426)
T ss_dssp             -TSEEEEEETTSSSCEEEEEEE
T ss_pred             -CCCEEEEEccCCceeEEEEEe
Confidence             468999998766555555544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=91.42  E-value=0.76  Score=34.63  Aligned_cols=77  Identities=12%  Similarity=0.119  Sum_probs=49.8

Q ss_pred             eeEEEecCCCeEEEEeCCC---------CeEEEEecCCCCCceE-EEEecCCCccCCCCCCcccccCCCceEEEcCCCC-
Q 029556           48 HSVIDRPGSSDLIVLDSSR---------SAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-  116 (191)
Q Consensus        48 ~gIav~d~~g~lyVaD~~n---------~~I~~~d~~~~~~g~v-~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-  116 (191)
                      +.+++++++..+|++-...         +.|..+|.   .+++. ..+..               -..|.+++++++|+ 
T Consensus       252 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~---~t~~~~~~~~~---------------~~~~~~~a~spDG~~  313 (355)
T d2bbkh_         252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA---KTGERLAKFEM---------------GHEIDSINVSQDEKP  313 (355)
T ss_dssp             SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET---TTCCEEEEEEE---------------EEEECEEEECCSSSC
T ss_pred             EEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeC---CCCcEEEEecC---------------CCCEEEEEEcCCCCe
Confidence            4578876666777654322         45666664   23332 22211               02588999999986 


Q ss_pred             -EEEEeCCCCEEEEEeCCCCCceEEEEec
Q 029556          117 -IYVADKSNHVIRKITNLDHGNQLIRQIN  144 (191)
Q Consensus       117 -iyVaD~~n~rIr~i~~~~~~~~~i~~i~  144 (191)
                       +|++...++.|+.+|.+++  +.++.+.
T Consensus       314 ~l~v~~~~d~~i~v~D~~tg--~~~~~i~  340 (355)
T d2bbkh_         314 LLYALSTGDKTLYIHDAESG--EELRSVN  340 (355)
T ss_dssp             EEEEEETTTTEEEEEETTTC--CEEEEEC
T ss_pred             EEEEEECCCCEEEEEECCCC--CEEEEEe
Confidence             7888888899999998765  4555554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.01  E-value=0.35  Score=39.43  Aligned_cols=77  Identities=10%  Similarity=0.186  Sum_probs=45.7

Q ss_pred             CCeeeEEE--ecCCCeEEEE-eCCCCeEEEEecCCCCCceEEEE-ecCCCccCCCCCCcccccCCCceEEEcCC-CCEEE
Q 029556           45 INPHSVID--RPGSSDLIVL-DSSRSAFYTLSFPLSEESVVKRL-AGDGVQGYSDGEPGSARFDKPKSFAVDMK-GNIYV  119 (191)
Q Consensus        45 ~~P~gIav--~d~~g~lyVa-D~~n~~I~~~d~~~~~~g~v~~~-aG~~~~G~~DG~~~~a~f~~P~gIavD~~-G~iyV  119 (191)
                      ..|+|+|.  ++.++.+|+. -...+++..+.+....++.+... +..    +..       -..+.|+++|++ +.|||
T Consensus       128 ~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~----f~~-------~~q~EGCVvDde~~~Lyi  196 (353)
T d1h6la_         128 DEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRA----FKM-------NSQTEGMAADDEYGSLYI  196 (353)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEE----EEC-------SSCEEEEEEETTTTEEEE
T ss_pred             CcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeec----cCC-------CCccceEEEeCCCCcEEE
Confidence            46899998  5556766532 22345665554422334432211 110    001       125789999987 78999


Q ss_pred             EeCCCCEEEEEeCC
Q 029556          120 ADKSNHVIRKITNL  133 (191)
Q Consensus       120 aD~~n~rIr~i~~~  133 (191)
                      ++. +..|++++.+
T Consensus       197 sEE-~~Giw~~~a~  209 (353)
T d1h6la_         197 AEE-DEAIWKFSAE  209 (353)
T ss_dssp             EET-TTEEEEEESS
T ss_pred             ecC-ccceEEEEec
Confidence            997 5789999864

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=90.49  E-value=2  Score=34.61  Aligned_cols=73  Identities=7%  Similarity=0.053  Sum_probs=53.2

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce---EEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEE
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV---VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVA  120 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~---v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVa  120 (191)
                      ..+.++++++++..++++-...++|..++.   .+++   +..+. .       |       ..|++++++++|. +|++
T Consensus       163 ~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~---~~~~~~~~~~i~-~-------g-------~~~~~~~~spdg~~~~va  224 (432)
T d1qksa2         163 PRVAAILASHYRPEFIVNVKETGKILLVDY---TDLNNLKTTEIS-A-------E-------RFLHDGGLDGSHRYFITA  224 (432)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEET---TCSSEEEEEEEE-C-------C-------SSEEEEEECTTSCEEEEE
T ss_pred             CceeEEEECCCCCEEEEEEccCCeEEEEEc---cCCCcceEEEEc-c-------c-------CccccceECCCCCEEEEe
Confidence            345667887767788899999999999985   2322   22221 1       1       1589999999987 8888


Q ss_pred             eCCCCEEEEEeCCCC
Q 029556          121 DKSNHVIRKITNLDH  135 (191)
Q Consensus       121 D~~n~rIr~i~~~~~  135 (191)
                      -...+.+..++....
T Consensus       225 ~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         225 ANARNKLVVIDTKEG  239 (432)
T ss_dssp             EGGGTEEEEEETTTT
T ss_pred             ccccceEEEeecccc
Confidence            888889999998654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=89.36  E-value=3.2  Score=30.90  Aligned_cols=79  Identities=6%  Similarity=-0.080  Sum_probs=49.3

Q ss_pred             CeeeEEEecCCCeEEEEeCC---------CCeEEEEecCCCCCceEE-EEecCCCccCCCCCCcccccCCCceEEEcCCC
Q 029556           46 NPHSVIDRPGSSDLIVLDSS---------RSAFYTLSFPLSEESVVK-RLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG  115 (191)
Q Consensus        46 ~P~gIav~d~~g~lyVaD~~---------n~~I~~~d~~~~~~g~v~-~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G  115 (191)
                      .| +++++|++..||+++..         .+.|+.+|.   .+++.. .+......       .......|.+++++++|
T Consensus        49 ~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~---~t~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~dg  117 (355)
T d2bbkh_          49 LP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP---VTLLPTADIELPDAP-------RFLVGTYPWMTSLTPDG  117 (355)
T ss_dssp             SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT---TTCCEEEEEEETTCC-------CCCBSCCGGGEEECTTS
T ss_pred             CC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC---CCCCEEEEEecCCcc-------eeecCCCCceEEEecCC
Confidence            35 69999778889998743         357888875   345433 22211100       11223578999999997


Q ss_pred             C-EEEEeCC-CCEEEEEeCCCC
Q 029556          116 N-IYVADKS-NHVIRKITNLDH  135 (191)
Q Consensus       116 ~-iyVaD~~-n~rIr~i~~~~~  135 (191)
                      . +++++.. ...++.++.+++
T Consensus       118 ~~~~v~~~~~~~~~~~~~~~~~  139 (355)
T d2bbkh_         118 KTLLFYQFSPAPAVGVVDLEGK  139 (355)
T ss_dssp             SEEEEEECSSSCEEEEEETTTT
T ss_pred             CeeEEecCCCCceeeeeecCCC
Confidence            5 7888754 456666776554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=87.38  E-value=0.64  Score=38.89  Aligned_cols=77  Identities=17%  Similarity=0.189  Sum_probs=54.5

Q ss_pred             CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCC---Cce---EEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEE
Q 029556           45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSE---ESV---VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIY  118 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~---~g~---v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iy  118 (191)
                      ..|+|++++|++..+|++....+.|..+|.+.-.   ++.   ...+.+....    |       ..|..-++|.+|+.|
T Consensus       258 ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~----g-------lgplh~~fd~~g~~y  326 (441)
T d1qnia2         258 KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPEL----G-------LGPLHTTFDGRGNAY  326 (441)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBC----C-------SCEEEEEECSSSEEE
T ss_pred             CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccc----c-------cCcccceecCCceEE
Confidence            5799999997777899999999999999863100   000   1111121111    1       256677999999999


Q ss_pred             EEeCCCCEEEEEeC
Q 029556          119 VADKSNHVIRKITN  132 (191)
Q Consensus       119 VaD~~n~rIr~i~~  132 (191)
                      .+-.....|.+.+.
T Consensus       327 ts~~~ds~v~kw~~  340 (441)
T d1qnia2         327 TTLFIDSQVCKWNI  340 (441)
T ss_dssp             EEETTTTEEEEEEH
T ss_pred             EcccccceEEEecc
Confidence            99999999999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=84.52  E-value=5.9  Score=29.02  Aligned_cols=76  Identities=8%  Similarity=0.078  Sum_probs=47.9

Q ss_pred             CCeeeEEEecCCCeEEEE-eCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556           45 INPHSVIDRPGSSDLIVL-DSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS  123 (191)
Q Consensus        45 ~~P~gIav~d~~g~lyVa-D~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~  123 (191)
                      ...+.++++|++..|+++ +...+.|+..+.   .++....+.+.              -.....++++++|...++-..
T Consensus        43 ~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~---~~~~~~~~~~~--------------~~~v~~~~~spdg~~l~~~~~  105 (360)
T d1k32a3          43 LRIRYVRRGGDTKVAFIHGTREGDFLGIYDY---RTGKAEKFEEN--------------LGNVFAMGVDRNGKFAVVAND  105 (360)
T ss_dssp             SCEEEEEECSSSEEEEEEEETTEEEEEEEET---TTCCEEECCCC--------------CCSEEEEEECTTSSEEEEEET
T ss_pred             CCEEEEEECCCCCEEEEEEcCCCCEEEEEEC---CCCcEEEeeCC--------------CceEEeeeecccccccceecc
Confidence            467889998555556544 444456777764   34554443321              113567889999887776667


Q ss_pred             CCEEEEEeCCCCCc
Q 029556          124 NHVIRKITNLDHGN  137 (191)
Q Consensus       124 n~rIr~i~~~~~~~  137 (191)
                      .+.++.++.++...
T Consensus       106 ~~~~~~~~~~~~~~  119 (360)
T d1k32a3         106 RFEIMTVDLETGKP  119 (360)
T ss_dssp             TSEEEEEETTTCCE
T ss_pred             ccccccccccccce
Confidence            77888888866533

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=84.31  E-value=5.2  Score=33.36  Aligned_cols=62  Identities=6%  Similarity=-0.134  Sum_probs=39.5

Q ss_pred             CCCeeeEEEec---CCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCC-CEEE
Q 029556           44 EINPHSVIDRP---GSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG-NIYV  119 (191)
Q Consensus        44 ~~~P~gIav~d---~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G-~iyV  119 (191)
                      .++| .+...+   ++..+||.|..|.||-|+|++   .-+..-++..++            ...|+|+.....+ .-||
T Consensus        85 ~HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~---~fkt~kIi~iPn------------~~~~HG~r~~~~p~T~YV  148 (459)
T d1fwxa2          85 LHHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCD---VMKCDAILEIPN------------AKGIHGLRPQKWPRSNYV  148 (459)
T ss_dssp             BCCE-EEEEETTEEEEEEEEEEETTTTEEEEEETT---TTEEEEEEECSS------------CCSEEEEEECCSSBCSEE
T ss_pred             cCCC-cccccCCccceeEEEEEcCCCceEEEEECc---ceeeeEEEecCC------------CCCCceeecccCCCeEEE
Confidence            4788 455543   456899999999999999973   444444443321            1246777776654 3566


Q ss_pred             Ee
Q 029556          120 AD  121 (191)
Q Consensus       120 aD  121 (191)
                      +.
T Consensus       149 ~~  150 (459)
T d1fwxa2         149 FC  150 (459)
T ss_dssp             EE
T ss_pred             Ec
Confidence            54