Citrus Sinensis ID: 029597

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MRPNGEPKRRKSTATRASSPSPSRRRGETTVRSATLLDNELATEEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRSDLIQKSSYCRVSGRDMDLLELSAYGNVRRGQDSGGCRIQ
Secondary Structure (PSIPRED)
cccccccccccEEEEccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHcccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccccccccccEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHcccccHHHHHHcccccccEEEcccEEEccccccccHHHHHEEEEHHcccccccccccHHHHHHcccccEcccccccEEEEEEEcccccccccccEEcc
Coil and Loop (DISEMBL)
mrpngepkrrkstatrasspspsrrrgettVRSATLLDNELATEEEISTLFTDlrissadstanprsfpysvKQQCWEKAekvrgrdpdrwrkdalgNVVFRklvgcpgclchdydhilpyskggkstlENCQVLQATVNrskgnrtelsrsdliqkssycrvsgrdmdllelsaygnvrrgqdsggcriq
Flexible Loop (DISEMBL)
mrpngepkrrkstatrasspspsrrrgettvrsatlldnelateEEISTLFTdlrissadstanprsfpysvkqqcwekaekvrgrdpdrwrkdalgnvVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQAtvnrskgnrtelsrsdliqkssycrvsgrdmdllelsaygnvrrgqdsggcriq
Low Complexity Region (SEG)
MRPNGEPkrrkstatrasspspsrrrGETTVRSATLLDNELATEEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRSDLIQKSSYCRVSGRDMDLLELSAYGNVRRGQDSGGCRIQ
Disordered region (IsUnstruct)
************************************************TLFTDL*****************VKQQCWEKA********DRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQAT*********************YCRVSGRDMDLLELSAY***************
Disordered Region (DISOPRED)
***********STATRASSPSPSRRRGETTVRSATLLDNELATEEEISTLF*****************PYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTEL*R*DLIQKSSYCRVSGRDMDLLELSAYGNVRRGQDSG*C***
Disordered Region (DISEMBL)
*******************************RSATLLDNELATEEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRSDLIQKSSYCRVSGRDMDLLELSAYGNVR***********
Disordered Region (DISPRO)
**************************************N***T***ISTLFTDLRISS**STANPRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRSDLIQKSSYCRVSGRDMDLLELSAYGNVRRGQDSGGCRIQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRPNGEPKRRKSTATRASSPSPSRRRGETTVRSATLLDNELATEEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRSDLIQKSSYCRVSGRDMDLLELSAYGNVRRGQDSGGCRIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
255547375	203	endonuclease, putative [Ricinus communis	0.931	0.876	0.763	4e-76
225457397	199	PREDICTED: uncharacterized protein LOC10	0.895	0.859	0.784	9e-75
449477241	200	PREDICTED: uncharacterized protein LOC10	0.795	0.76	0.826	1e-70
449440796	200	PREDICTED: uncharacterized protein LOC10	0.795	0.76	0.826	2e-70
388520967	198	unknown [Lotus japonicus]	0.890	0.858	0.690	2e-66
351720795	206	uncharacterized protein LOC100500174 [Gl	0.806	0.747	0.765	2e-66
115451005	187	Os03g0169800 [Oryza sativa Japonica Grou	0.764	0.780	0.824	4e-66
222624269	187	hypothetical protein OsJ_09573 [Oryza sa	0.764	0.780	0.817	1e-65
15232817	234	HNH endonuclease [Arabidopsis thaliana]	0.947	0.773	0.639	5e-65
242036789	188	hypothetical protein SORBIDRAFT_01g04583	0.722	0.734	0.818	2e-64

>gi|255547375|ref|XP_002514745.1| endonuclease, putative [Ricinus communis] gi|223546349|gb|EEF47851.1| endonuclease, putative [Ricinus communis]

 Score =  289 bits (739), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 139/182 (76%), Positives = 157/182 (86%), Gaps = 4/182 (2%)

Query: 13  TATRASSPSPSRRRGETTVRSATLLDNELATEEEISTLFTDLRIS---SADSTANPRSFP 69
           TA+ +S+P  S RR  T   SATL D E+ TEE+  TLF DL+IS   +  S+  PRSFP
Sbjct: 23  TASFSSTPDSSHRRS-TLAHSATLQDREVLTEEDTLTLFEDLQISEKYTKFSSTEPRSFP 81

Query: 70  YSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTL 129
           YSVKQQCW+KAEKV+GRDPDRWR+D LGN+VFRKLVGCPGCLCHDYDHI+PYSKGGKSTL
Sbjct: 82  YSVKQQCWDKAEKVKGRDPDRWRRDPLGNIVFRKLVGCPGCLCHDYDHIVPYSKGGKSTL 141

Query: 130 ENCQVLQATVNRSKGNRTELSRSDLIQKSSYCRVSGRDMDLLELSAYGNVRRGQDSGGCR 189
           ENCQVLQATVNRSKGNRTELSR+DLIQ+SSYCRV+GRDMDL+ELSAYGNVR  Q+SGGCR
Sbjct: 142 ENCQVLQATVNRSKGNRTELSRADLIQRSSYCRVAGRDMDLIELSAYGNVRHAQESGGCR 201

Query: 190 IQ 191
           IQ
Sbjct: 202 IQ 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457397|ref|XP_002284877.1| PREDICTED: uncharacterized protein LOC100262165 isoform 1 [Vitis vinifera]

 Score =  285 bits (728), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 135/172 (78%), Positives = 150/172 (87%), Gaps = 1/172 (0%)

Query: 20  PSPSRRRGETTVRSATLLDNELATEEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEK 79
           PS SR     +  S +LLD    TE+E +TLF +L+IS  +   NPRSFPYSVKQQCWEK
Sbjct: 29  PSGSRSTTRLSPSSTSLLDTPFITEDEDATLFDNLKIS-PNPNFNPRSFPYSVKQQCWEK 87

Query: 80  AEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATV 139
           AEK++GRDPDRWR+D LGN+VFRKLVGCPGCLCHDYDHI+PYSKGGKSTLENCQVLQATV
Sbjct: 88  AEKIKGRDPDRWRRDPLGNIVFRKLVGCPGCLCHDYDHIVPYSKGGKSTLENCQVLQATV 147

Query: 140 NRSKGNRTELSRSDLIQKSSYCRVSGRDMDLLELSAYGNVRRGQDSGGCRIQ 191
           NRSKGNRTE+S++DLIQKSSYCRVSGRDMDLLELSAYGNVRRGQDSGGC IQ
Sbjct: 148 NRSKGNRTEISKADLIQKSSYCRVSGRDMDLLELSAYGNVRRGQDSGGCTIQ 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477241|ref|XP_004154969.1| PREDICTED: uncharacterized protein LOC101226861 [Cucumis sativus]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 129/156 (82%), Positives = 142/156 (91%), Gaps = 4/156 (2%)

Query: 38  DNELATEEEISTLFTDLRISSADSTAN--PRSFPYSVKQQCWEKAEKVRGRDPDRWRKDA 95
           D +L T E  S+L  DL++S  DS +N  PRSFP+SVKQQCW+KAEK++GRDPDRWR+DA
Sbjct: 47  DRDLVTGE--SSLLGDLKLSPDDSVSNYNPRSFPHSVKQQCWDKAEKIKGRDPDRWRRDA 104

Query: 96  LGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRSDLI 155
           LGN VFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTE+SR++LI
Sbjct: 105 LGNTVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTEISRAELI 164

Query: 156 QKSSYCRVSGRDMDLLELSAYGNVRRGQDSGGCRIQ 191
           QKSSYCRVSGRDMDLLELSAYGNV RGQDSGGCRIQ
Sbjct: 165 QKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440796|ref|XP_004138170.1| PREDICTED: uncharacterized protein LOC101222461 [Cucumis sativus]

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/156 (82%), Positives = 141/156 (90%), Gaps = 4/156 (2%)

Query: 38  DNELATEEEISTLFTDLRISSADSTAN--PRSFPYSVKQQCWEKAEKVRGRDPDRWRKDA 95
           D +L T E  S+L  DL+ S  DS +N  PRSFP+SVKQQCW+KAEK++GRDPDRWR+DA
Sbjct: 47  DRDLVTGE--SSLLGDLKFSPDDSVSNYNPRSFPHSVKQQCWDKAEKIKGRDPDRWRRDA 104

Query: 96  LGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRSDLI 155
           LGN VFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTE+SR++LI
Sbjct: 105 LGNTVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTEISRAELI 164

Query: 156 QKSSYCRVSGRDMDLLELSAYGNVRRGQDSGGCRIQ 191
           QKSSYCRVSGRDMDLLELSAYGNV RGQDSGGCRIQ
Sbjct: 165 QKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520967|gb|AFK48545.1| unknown [Lotus japonicus]

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 127/184 (69%), Positives = 145/184 (78%), Gaps = 14/184 (7%)

Query: 8   KRRKSTATRASSPSPSRRRGETTVRSATLLDNELATEEEISTLFTDLRISSADSTANPRS 67
           K R +T +   S SP R    +T  SATLLD++         LF D          NPRS
Sbjct: 29  KDRSATTSSKLSSSPKR----STSPSATLLDDDPVA------LFDDY----THPNPNPRS 74

Query: 68  FPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKS 127
           FP+SVKQ+CWEKA+K++GRDPDRWR+D LGN +FRKLVGCPGCLCHDYDHI+PYSKGG+S
Sbjct: 75  FPHSVKQKCWEKADKIKGRDPDRWRRDPLGNTIFRKLVGCPGCLCHDYDHIVPYSKGGQS 134

Query: 128 TLENCQVLQATVNRSKGNRTELSRSDLIQKSSYCRVSGRDMDLLELSAYGNVRRGQDSGG 187
           TLENCQVLQATVNR+KGNRT +SR+DL+QKSSYCRVSGRDMDLLELSAYGNVR G DSGG
Sbjct: 135 TLENCQVLQATVNRAKGNRTGISRADLMQKSSYCRVSGRDMDLLELSAYGNVRHGPDSGG 194

Query: 188 CRIQ 191
           CRIQ
Sbjct: 195 CRIQ 198

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720795|ref|NP_001237956.1| uncharacterized protein LOC100500174 [Glycine max] gi|255629565|gb|ACU15130.1| unknown [Glycine max]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/158 (76%), Positives = 141/158 (89%), Gaps = 4/158 (2%)

Query: 34  ATLLDNELATEEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWRK 93
           ATLLD     ++++++LF D    + +   NPRSFP+SVKQ+CWEKA+KV+GRDPDRWR+
Sbjct: 53  ATLLD----VDDDVTSLFHDYPSPNPNPNPNPRSFPHSVKQKCWEKADKVKGRDPDRWRR 108

Query: 94  DALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRSD 153
           DALGN +FRKLVGCPGCLCHDYDHI+PYSKGG+STLENCQVLQATVNRSKGNRTE+S+++
Sbjct: 109 DALGNTLFRKLVGCPGCLCHDYDHIIPYSKGGESTLENCQVLQATVNRSKGNRTEISKAE 168

Query: 154 LIQKSSYCRVSGRDMDLLELSAYGNVRRGQDSGGCRIQ 191
           LIQKSSYCRVS RDMDLLELSAYGNVRRG DSGGCRIQ
Sbjct: 169 LIQKSSYCRVSDRDMDLLELSAYGNVRRGPDSGGCRIQ 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115451005|ref|NP_001049103.1| Os03g0169800 [Oryza sativa Japonica Group] gi|19071624|gb|AAL84291.1|AC073556_8 putative endonuclease [Oryza sativa Japonica Group] gi|108706401|gb|ABF94196.1| HNH endonuclease domain-containing protein, putative, expressed [Oryza sativa Japonica Group] gi|113547574|dbj|BAF11017.1| Os03g0169800 [Oryza sativa Japonica Group] gi|215686970|dbj|BAG90840.1| unnamed protein product [Oryza sativa Japonica Group] gi|218192172|gb|EEC74599.1| hypothetical protein OsI_10187 [Oryza sativa Indica Group]

 Score =  256 bits (653), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 122/148 (82%), Positives = 134/148 (90%), Gaps = 2/148 (1%)

Query: 44  EEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRK 103
           EE    L T  R S+  S++ PRSFPY VKQ+CWEKAE+V GRDP+RWR+DALGNVVFRK
Sbjct: 42  EELDGLLLTAPRPSA--SSSEPRSFPYVVKQRCWEKAERVAGRDPERWRRDALGNVVFRK 99

Query: 104 LVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRSDLIQKSSYCRV 163
           LVGCPGCLCHDYDHI+PYSKGGKSTLENCQVLQATVNRSKGN+TELS+S+LIQKS+YCRV
Sbjct: 100 LVGCPGCLCHDYDHIVPYSKGGKSTLENCQVLQATVNRSKGNKTELSKSELIQKSAYCRV 159

Query: 164 SGRDMDLLELSAYGNVRRGQDSGGCRIQ 191
           SGRDMDLLELSAYGNVRRG DSGGCRIQ
Sbjct: 160 SGRDMDLLELSAYGNVRRGPDSGGCRIQ 187

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222624269|gb|EEE58401.1| hypothetical protein OsJ_09573 [Oryza sativa Japonica Group]

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/148 (81%), Positives = 134/148 (90%), Gaps = 2/148 (1%)

Query: 44  EEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRK 103
           EE    L T  R S+  S++ PRSFPY VKQ+CWEKAE++ GRDP+RWR+DALGNVVFRK
Sbjct: 42  EELDGLLLTAPRPSA--SSSEPRSFPYVVKQRCWEKAERLPGRDPERWRRDALGNVVFRK 99

Query: 104 LVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRSDLIQKSSYCRV 163
           LVGCPGCLCHDYDHI+PYSKGGKSTLENCQVLQATVNRSKGN+TELS+S+LIQKS+YCRV
Sbjct: 100 LVGCPGCLCHDYDHIVPYSKGGKSTLENCQVLQATVNRSKGNKTELSKSELIQKSAYCRV 159

Query: 164 SGRDMDLLELSAYGNVRRGQDSGGCRIQ 191
           SGRDMDLLELSAYGNVRRG DSGGCRIQ
Sbjct: 160 SGRDMDLLELSAYGNVRRGPDSGGCRIQ 187

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232817|ref|NP_190333.1| HNH endonuclease [Arabidopsis thaliana] gi|6522532|emb|CAB61975.1| hypothetical protein [Arabidopsis thaliana] gi|117168237|gb|ABK32201.1| At3g47490 [Arabidopsis thaliana] gi|332644767|gb|AEE78288.1| HNH endonuclease [Arabidopsis thaliana]

 Score =  252 bits (643), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 131/205 (63%), Positives = 153/205 (74%), Gaps = 24/205 (11%)

Query: 1   MRPNGEPKRRKSTATRASSPS----------PSRRRGET----TVRSATLLDNELATEEE 46
           M+P  +P RR++ A  +SSPS          P+R  GE        SATLLD      EE
Sbjct: 40  MKP--DPTRRRNRALSSSSPSKTRPELSSGSPNRNTGEARGGKVKTSATLLD-----REE 92

Query: 47  ISTLFTDLRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVG 106
           +  LF        D    PRSFPYSVKQQCWEKAEK++GRDP+RWR+D LGN+VFRKLVG
Sbjct: 93  MG-LFPG--SGYGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVG 149

Query: 107 CPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRSDLIQKSSYCRVSGR 166
           CPGCLCHDYDHI+PYSKGGKSTLENCQVLQA VNRSKGN+T++SRS+LIQ+SSYCRV+GR
Sbjct: 150 CPGCLCHDYDHIVPYSKGGKSTLENCQVLQAKVNRSKGNKTDISRSELIQRSSYCRVAGR 209

Query: 167 DMDLLELSAYGNVRRGQDSGGCRIQ 191
           DMDL+EL+AYGNV+R   S GCRIQ
Sbjct: 210 DMDLIELTAYGNVQRAPTSSGCRIQ 234

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242036789|ref|XP_002465789.1| hypothetical protein SORBIDRAFT_01g045830 [Sorghum bicolor] gi|241919643|gb|EER92787.1| hypothetical protein SORBIDRAFT_01g045830 [Sorghum bicolor]

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/138 (81%), Positives = 128/138 (92%)

Query: 54  LRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCH 113
           L  +   S + PRSF Y+VKQQCWEKAE+V GRDP+RWR+DALGN+VFRKLVGCPGCLCH
Sbjct: 51  LLTAPPPSASEPRSFSYAVKQQCWEKAERVPGRDPERWRRDALGNIVFRKLVGCPGCLCH 110

Query: 114 DYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRSDLIQKSSYCRVSGRDMDLLEL 173
           DYDHI+PYSKGGKSTLENCQVLQATVNRSKGN+TE+S+S+LIQKS+YCRVSGRDMDL+EL
Sbjct: 111 DYDHIVPYSKGGKSTLENCQVLQATVNRSKGNKTEISKSELIQKSAYCRVSGRDMDLVEL 170

Query: 174 SAYGNVRRGQDSGGCRIQ 191
           SAYGNVRRG DSGGC+IQ
Sbjct: 171 SAYGNVRRGPDSGGCKIQ 188

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
TAIR|locus:2079137	234	AT3G47490 [Arabidopsis thalian	0.790	0.645	0.735	1.5e-60
TAIR|locus:2035020	186	AT1G18680 [Arabidopsis thalian	0.638	0.655	0.444	3.5e-27

TAIR|locus:2079137 AT3G47490 [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 117/159 (73%), Positives = 133/159 (83%)

Query:    33 SATLLDNELATEEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWR 92
             SATLLD E     E+  LF        D    PRSFPYSVKQQCWEKAEK++GRDP+RWR
Sbjct:    84 SATLLDRE-----EMG-LFPGS--GYGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWR 135

Query:    93 KDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRS 152
             +D LGN+VFRKLVGCPGCLCHDYDHI+PYSKGGKSTLENCQVLQA VNRSKGN+T++SRS
Sbjct:   136 RDHLGNIVFRKLVGCPGCLCHDYDHIVPYSKGGKSTLENCQVLQAKVNRSKGNKTDISRS 195

Query:   153 DLIQKSSYCRVSGRDMDLLELSAYGNVRRGQDSGGCRIQ 191
             +LIQ+SSYCRV+GRDMDL+EL+AYGNV+R   S GCRIQ
Sbjct:   196 ELIQRSSYCRVAGRDMDLIELTAYGNVQRAPTSSGCRIQ 234

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2035020 AT1G18680 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 56/126 (44%), Positives = 81/126 (64%)

Query:    65 PRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKG 124
             PR F    K +CW  A+ V GR P+RWRKD  GN+V ++   C GCLC +YDHI+PYSKG
Sbjct:    40 PRFFDGKAKNKCWANADIVPGRHPERWRKDVAGNIVCKRFGNCNGCLCFEYDHIVPYSKG 99

Query:   125 GKSTLENCQVLQATVNRSKGNRTELSRSDLIQKSSYCRVSGRDMDLLELSAYGNVRR-GQ 183
             G+S  ENCQ+LQ  VNR K  +  +  + L   S   + + +++D++E++ YG+V R G+
Sbjct:   100 GESIAENCQILQTRVNRFKSAQENVDATTLKSYSCGLQFTDKELDVIEMAVYGDVLRPGK 159

Query:   184 DSGGCR 189
             +   CR
Sbjct:   160 E---CR 162


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      191       172   0.00093  108 3  11 22  0.44    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  160 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.81u 0.17s 15.98t   Elapsed:  00:00:01
  Total cpu time:  15.81u 0.17s 15.98t   Elapsed:  00:00:01
  Start:  Sat May 11 04:06:21 2013   End:  Sat May 11 04:06:22 2013

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	191
pfam01844	47	pfam01844, HNH, HNH endonuclease	1e-08
cd00085	57	cd00085, HNHc, HNH nucleases; HNH endonuclease sig	1e-05
pfam13395	54	pfam13395, HNH_4, HNH endonuclease	3e-05
smart00507	52	smart00507, HNHc, HNH nucleases	3e-04

>gnl|CDD|216737 pfam01844, HNH, HNH endonuclease

 Score = 48.8 bits (117), Expect = 1e-08
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 7/47 (14%)

Query: 107 CPGCLCHD-------YDHILPYSKGGKSTLENCQVLQATVNRSKGNR 146
           C  C            DHI+P SKGG   L N  +L  + +R K  R
Sbjct: 1   CQYCGRPFKDTDALEVDHIIPRSKGGADDLSNLVLLCRSCHRRKHAR 47

Length = 47

>gnl|CDD|238038 cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins

 Score = 40.9 bits (96), Expect = 1e-05
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 99  VVFRKLVGCPGCLCH------DYDHILPYSKGGKSTLENCQVLQATVNRSKG 144
           V+  +   CP C         + DHI+P S GG + L+N  +L    +R K 
Sbjct: 6   VLLARDGLCPYCGKPGGTEGLEVDHIIPLSDGGNNDLDNLVLLCRKCHRKKH 57

The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins. Length = 57

>gnl|CDD|222099 pfam13395, HNH_4, HNH endonuclease

 Score = 39.4 bits (93), Expect = 3e-05
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 114 DYDHILPYSKGGKSTLENCQVL-QATVNRSKGNRT 147
           D DHI+P S+    +L N +VL     NR K NRT
Sbjct: 19  DIDHIIPQSRSFDDSLWN-KVLVLREANREKSNRT 52

This HNH nuclease domain is found in CRISPR-related proteins. Length = 54

>gnl|CDD|214702 smart00507, HNHc, HNH nucleases

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 98  NVVFRKLVGCPGCLCH-----DYDHILPYSKGGKSTLENCQVLQATVNR 141
            ++  +   C  C        + DHI+P S GG   L+N  +L    + 
Sbjct: 4   RLLLHRDGVCAYCGKPASEGLEVDHIIPLSDGGNDDLDNLVLLCPKCHI 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
PF13395	54	HNH_4: HNH endonuclease	99.23
cd00085	57	HNHc HNH nucleases; HNH endonuclease signature whi	99.11
PF01844	47	HNH: HNH endonuclease; InterPro: IPR002711 HNH end	99.11
TIGR01865	805	cas_Csn1 CRISPR-associated protein, Csn1 family. C	98.93
smart00507	52	HNHc HNH nucleases.	98.82
PRK11295	113	hypothetical protein; Provisional	98.77
COG1403	146	McrA Restriction endonuclease [Defense mechanisms]	98.74
PF14239	176	RRXRR: RRXRR protein	98.6
TIGR02646	144	conserved hypothetical protein TIGR02646. Members	98.46
COG3513	1088	Predicted CRISPR-associated nuclease, contains Mcr	95.83
PF14279	71	HNH_5: HNH endonuclease	95.44
TIGR02986	424	restrict_Alw26I type II restriction endonuclease,	94.85
PHA02565	157	49 recombination endonuclease VII; Provisional	93.45
COG3183	272	Predicted restriction endonuclease [Defense mechan	93.38
PF06147	200	DUF968: Protein of unknown function (DUF968); Inte	93.21
PF13391	66	HNH_2: HNH endonuclease	92.93
PF09665	511	RE_Alw26IDE: Type II restriction endonuclease (RE_	91.06
TIGR03031	802	cas_csx12 CRISPR-associated protein, Csx12 family.	89.67
PF05766	189	NinG: Bacteriophage Lambda NinG protein; InterPro:	89.35
COG3440	301	Predicted restriction endonuclease [Defense mechan	89.04
smart00782	47	PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein fami	86.8

>PF13395 HNH_4: HNH endonuclease

Probab=99.23  E-value=4e-12  Score=86.17  Aligned_cols=43  Identities=42%  Similarity=0.698  Sum_probs=39.7

Q ss_pred             CCCCCC-----------CCcceEEecCCCCCChHhhHHHHhHHHHhhhcCCCcc
Q 029597          107 CPGCLC-----------HDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTEL  149 (191)
Q Consensus       107 C~~Cg~-----------~eVDHIiP~S~GG~d~~~NL~~LC~~CN~~K~n~~~~  149 (191)
                      |.|||.           .+||||+|+|.++.+++.||++.|..||..|++++|+
T Consensus         1 C~Y~g~~i~~~~l~~~~~~iDHiiP~s~~~~~s~~Nlvl~~~~~N~~K~~k~P~   54 (54)
T PF13395_consen    1 CPYCGKPISIENLFKNKYEIDHIIPRSRGGDDSFWNLVLCCKECNRSKGNKTPF   54 (54)
T ss_pred             CCCCCCCCChhhcccCCceeEEEecccccCCCCcchhheECHHHhhcccccCCC
Confidence            788885           3899999999999999999999999999999999874

>cd00085 HNHc HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins

Probab=99.11  E-value=4.6e-11  Score=78.11  Aligned_cols=40  Identities=38%  Similarity=0.603  Sum_probs=37.0

Q ss_pred             CCCCCCCC------CCcceEEecCCCCCChHhhHHHHhHHHHhhhc
Q 029597          105 VGCPGCLC------HDYDHILPYSKGGKSTLENCQVLQATVNRSKG  144 (191)
Q Consensus       105 ~~C~~Cg~------~eVDHIiP~S~GG~d~~~NL~~LC~~CN~~K~  144 (191)
                      +.|++|+.      +++|||+|++.||.++++||+++|..||..|+
T Consensus        12 ~~C~~c~~~~~~~~~~v~Hi~p~~~~~~~~~~Nl~~~c~~ch~~~~   57 (57)
T cd00085          12 GLCPYCGKPGGTEGLEVDHIIPLSDGGNNDLDNLVLLCRKCHRKKH   57 (57)
T ss_pred             CcCccCCCcCCCCCceEEeecchhhCCCCchHHhHHHHHHHhhccC
Confidence            78999984      59999999999999999999999999999874

The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.

>PF01844 HNH: HNH endonuclease; InterPro: IPR002711 HNH endonuclease is found in bacteria and viruses [, , ]

Probab=99.11  E-value=4.6e-12  Score=81.87  Aligned_cols=40  Identities=40%  Similarity=0.639  Sum_probs=29.3

Q ss_pred             CCCCCC-------CCcceEEecCCCCCChHhhHHHHhHHHHhhhcCC
Q 029597          107 CPGCLC-------HDYDHILPYSKGGKSTLENCQVLQATVNRSKGNR  146 (191)
Q Consensus       107 C~~Cg~-------~eVDHIiP~S~GG~d~~~NL~~LC~~CN~~K~n~  146 (191)
                      |++|+.       +++|||+|++.||.++++||+++|..||..|+++
T Consensus         1 C~~C~~~~~~~~~~~v~Hi~~~~~gg~~~~~Nl~~lC~~Ch~~k~~k   47 (47)
T PF01844_consen    1 CQYCGKPGSDNESLHVHHIIPRSKGGKNDLENLILLCPSCHRKKHDK   47 (47)
T ss_dssp             -TTT--B--GG-GEEEEESS-TTTT---STTTEEEEEHHHHHHHH--
T ss_pred             CCCCCCcCccCcceEeECcCchhcCCCCCHHHHHHHhHHHHHHhcCC
Confidence            778874       4899999999999999999999999999999874

This family includes pyocins, colicins and anaredoxins.; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity; PDB: 2QGP_C.

>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family

Probab=98.93  E-value=9.7e-10  Score=108.63  Aligned_cols=52  Identities=25%  Similarity=0.361  Sum_probs=47.8

Q ss_pred             hhhccCCCCCCCCCC------------CcceEEecCCCCCChHhhHHHHhHHHHhhhcCCCccc
Q 029597           99 VVFRKLVGCPGCLCH------------DYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELS  150 (191)
Q Consensus        99 vl~r~~~~C~~Cg~~------------eVDHIiP~S~GG~d~~~NL~~LC~~CN~~K~n~~~~~  150 (191)
                      ++..|++.|+|||..            +||||+|+|.||+|+++|++++|..||..|++++|+.
T Consensus       576 L~~~q~~~C~Y~g~~i~~~~l~~~~~~~iDHIiP~s~~~dds~~N~vl~~~~~N~~K~~~tp~e  639 (805)
T TIGR01865       576 LYYQQNGKCMYTGKEIDIDDLFDLSYYEIDHILPQSRSFDDSISNKVLVLASENQEKGDQTPYE  639 (805)
T ss_pred             HHHHcCCcCCCCCCcCccccccCCCCCceeeecccccCCCCcHHHHHHHhHHHHhhccCCCHHH
Confidence            667899999999952            7999999999999999999999999999999999964

CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.

>smart00507 HNHc HNH nucleases

Probab=98.82  E-value=8.9e-10  Score=70.66  Aligned_cols=42  Identities=31%  Similarity=0.527  Sum_probs=37.6

Q ss_pred             hhhccCCCCCCCCC-----CCcceEEecCCCCCChHhhHHHHhHHHHh
Q 029597           99 VVFRKLVGCPGCLC-----HDYDHILPYSKGGKSTLENCQVLQATVNR  141 (191)
Q Consensus        99 vl~r~~~~C~~Cg~-----~eVDHIiP~S~GG~d~~~NL~~LC~~CN~  141 (191)
                      ++.++ +.|++|+.     +++|||+|++.||.++++||+++|..||.
T Consensus         6 ~~~r~-~~C~~C~~~~~~~~~v~Hi~p~~~~~~~~~~Nl~~~c~~ch~   52 (52)
T smart00507        6 LLHRD-GVCAYCGKPASEGLEVDHIIPLSDGGNDDLDNLVLLCPKCHI   52 (52)
T ss_pred             HHHHC-CCCcCCcCCCCCCeEEEecCChhcCCCCChHhCeecChhhCc
Confidence            55667 89999984     59999999999999999999999999984

>PRK11295 hypothetical protein; Provisional

Probab=98.77  E-value=3e-09  Score=82.65  Aligned_cols=49  Identities=12%  Similarity=0.053  Sum_probs=42.1

Q ss_pred             hhhccCCCCCCCCCC---------CcceEEecCCCCCChHhhHHHHhHHHHhhhcCCC
Q 029597           99 VVFRKLVGCPGCLCH---------DYDHILPYSKGGKSTLENCQVLQATVNRSKGNRT  147 (191)
Q Consensus        99 vl~r~~~~C~~Cg~~---------eVDHIiP~S~GG~d~~~NL~~LC~~CN~~K~n~~  147 (191)
                      +|.++.+.|+.|+..         +||||+|...|+.++.+|||+||..||..++.+.
T Consensus        19 ~L~r~p~lC~~Cgr~~~~a~~~a~vVDHIip~~~gd~~D~sNLQ~LC~~CHn~kh~R~   76 (113)
T PRK11295         19 ALKLYPWVCGRCSREFVYSNLRELTVHHIDHDHDNNPEDGSNWELLCLYCHDHEHSKY   76 (113)
T ss_pred             HHHHCcchhhhhcChhccCCCCCceeeccCCCCCCCCCchhHHHHHhHHHHhHHHhhH
Confidence            455666789999873         8999999988999889999999999999997654

>COG1403 McrA Restriction endonuclease [Defense mechanisms]

Probab=98.74  E-value=7.4e-09  Score=79.13  Aligned_cols=52  Identities=35%  Similarity=0.512  Sum_probs=46.3

Q ss_pred             hhhccCCCCCCCCC----CCcceEEecCCCCCChHhhHHHHhHHHHhhhcCCCccc
Q 029597           99 VVFRKLVGCPGCLC----HDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELS  150 (191)
Q Consensus        99 vl~r~~~~C~~Cg~----~eVDHIiP~S~GG~d~~~NL~~LC~~CN~~K~n~~~~~  150 (191)
                      ++.++.+.|.+|+.    .++|||+|.+.||.+.++||+++|..||..|++.....
T Consensus        64 ~~~~d~~~c~~c~~~~~~~~~dHiip~~~g~~~~~~Nl~~lc~~c~~~k~~~~~~~  119 (146)
T COG1403          64 VLLRDNGLCQYCGSVGTDLEVDHIVPLSRGGASAWENLETLCERCHNKKGSRLPGK  119 (146)
T ss_pred             HHccccccccccCCcCCCCceeeEeecccCCcchHHHHHHHHHhhcccccccchhh
Confidence            56677789999974    58999999999999999999999999999999988753

>PF14239 RRXRR: RRXRR protein

Probab=98.60  E-value=1.3e-08  Score=84.51  Aligned_cols=49  Identities=12%  Similarity=0.042  Sum_probs=44.5

Q ss_pred             ccccc-CcccccCCCCCCCCCCCC--CccchhhcccccccH-Hhhhccccccc
Q 029597            7 PKRRK-STATRASSPSPSRRRGET--TVRSATLLDNELATE-EEISTLFTDLR   55 (191)
Q Consensus         7 ~~~~~-~~~~~~~~~r~~~r~~~~--~~~~~~l~~~~~~~~-~~~~~l~p~~~   55 (191)
                      ||+|| |++||||+|||+||+++.  ||||.....+.++++ +++..|+||..
T Consensus        98 RR~RR~~rk~RyR~~RF~NR~r~~gwL~PSl~~rv~~~l~~v~~L~~~~PIt~  150 (176)
T PF14239_consen   98 RRGRRYNRKTRYRKARFDNRKRPKGWLPPSLRHRVDTHLRWVKRLCKLLPITA  150 (176)
T ss_pred             hhhcccccccccccccccccCCCCCCcCcCHHHHHHHHHHHHHHHHHhCCccc
Confidence            67888 899999999999999983  999998888889997 99999999986

>TIGR02646 conserved hypothetical protein TIGR02646

Probab=98.46  E-value=1.3e-07  Score=75.42  Aligned_cols=49  Identities=16%  Similarity=0.024  Sum_probs=40.1

Q ss_pred             hhccCCCCCCCCC------CCcceEEecCCCCCC--hHhhHHHHhHH---------HHhhhcCCCc
Q 029597          100 VFRKLVGCPGCLC------HDYDHILPYSKGGKS--TLENCQVLQAT---------VNRSKGNRTE  148 (191)
Q Consensus       100 l~r~~~~C~~Cg~------~eVDHIiP~S~GG~d--~~~NL~~LC~~---------CN~~K~n~~~  148 (191)
                      +..+++.|+||+.      ++||||+|.+..+..  +|+||.++|..         ||..|++...
T Consensus        20 ~~~~~~~C~YC~~~~~~~~~~ieH~~Pk~~~~~~~~~~~NL~~sC~~~n~~~~~~~Cn~~K~~~~~   85 (144)
T TIGR02646        20 LQLQGGLCAYCEREIELLGSHIEHFRPKGAYPPLTLDWSNLFGSCHRESKQGNPLHCGRFKDNSCG   85 (144)
T ss_pred             HHHhCCCcCccCCCcCCCCcceeeecccCCChhhhcChhhchhhccccCCCCCccccccccccccc
Confidence            3456689999986      499999999988776  56999999999         8888865543

Members of this uncharacterized protein family are found exclusively in bacteria. Neighboring genes in various genomes are also uncharacterized or may annotated as similar to restriction system proteins.

>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]

Probab=95.83  E-value=0.0017  Score=64.95  Aligned_cols=51  Identities=24%  Similarity=0.334  Sum_probs=46.6

Q ss_pred             hhhccCCCCCCCCC------------CCcceEEecCCCCCChHhhHHHHhHHHHhhhcCCCcc
Q 029597           99 VVFRKLVGCPGCLC------------HDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTEL  149 (191)
Q Consensus        99 vl~r~~~~C~~Cg~------------~eVDHIiP~S~GG~d~~~NL~~LC~~CN~~K~n~~~~  149 (191)
                      +++.|++.|.|.|.            .+||||+|.|.--+|+++|.++.-..=|+.|+|.+|.
T Consensus       566 LY~~Q~gkcmYsgqei~I~rL~dk~~~eIDHi~P~Sr~~DDS~~NkVLv~s~~Nq~KgnqtP~  628 (1088)
T COG3513         566 LYYLQNGKCMYSGQEIDIHRLSDKGYYEIDHIVPQSRTWDDSIDNKVLVLSSENQEKGNQTPY  628 (1088)
T ss_pred             HHHHhcCcccccCcccchhhcccccceeeceeccccccccccccceeEEeccccccccCCCCH
Confidence            35679999999996            2899999999999999999999999999999999985

>PF14279 HNH_5: HNH endonuclease

Probab=95.44  E-value=0.0052  Score=44.06  Aligned_cols=39  Identities=31%  Similarity=0.549  Sum_probs=32.5

Q ss_pred             CCCCCCC------CcceEEecCCCCCChHhhHHHHhHHHHhhhcCCCc
Q 029597          107 CPGCLCH------DYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTE  148 (191)
Q Consensus       107 C~~Cg~~------eVDHIiP~S~GG~d~~~NL~~LC~~CN~~K~n~~~  148 (191)
                      |.||...      ...||||-|-||...+.|   +|..||..-+...+
T Consensus         1 Ci~C~~~~~~~~~s~EHIIP~sLGG~~~~~~---vC~~CN~~~g~~vD   45 (71)
T PF14279_consen    1 CIYCNKEKSESNFSEEHIIPESLGGKLKINN---VCDKCNNKFGSKVD   45 (71)
T ss_pred             CccCCCCCCccCCCccccCchhcCCcccccc---hhHHHhHHHhHHHH
Confidence            7888752      479999999999877766   99999999887765

>TIGR02986 restrict_Alw26I type II restriction endonuclease, Alw26I/Eco31I/Esp3I family

Probab=94.85  E-value=0.012  Score=54.67  Aligned_cols=50  Identities=30%  Similarity=0.299  Sum_probs=38.3

Q ss_pred             CCCCCCCC----CCcceEEecCCCCCChHhhHHHHhHHHHhhhcCCCccchhHHhhh
Q 029597          105 VGCPGCLC----HDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRSDLIQK  157 (191)
Q Consensus       105 ~~C~~Cg~----~eVDHIiP~S~GG~d~~~NL~~LC~~CN~~K~n~~~~~~~el~~~  157 (191)
                      ..|+.|+.    -..|||=|+|.|-...+ +.|++|..||.+|.++..  ..+++.+
T Consensus       245 ~~~~~~~~~p~~~saDHIGPISlGF~h~P-~Fqplc~~cNSaKnnR~~--lsDV~~L  298 (424)
T TIGR02986       245 CSIPECCKHPEKISADHIGPISLGFVHDP-RFQPLCSSCNSAKNDRLT--LSDVKTL  298 (424)
T ss_pred             ccCcccccCCCCCCccccCCcccccccCc-ccccccccccccccccee--HHHHHHH
Confidence            34455554    38999999999988766 669999999999999985  3444444

Members of this family are type II restriction endonucleases of the Alw26I/Eco31I/Esp3I family. Characterized specificities of three members are GGTCTC, CGTCTC, and the shared subsequence GTCTC.

>PHA02565 49 recombination endonuclease VII; Provisional

Probab=93.45  E-value=0.031  Score=45.91  Aligned_cols=46  Identities=17%  Similarity=0.143  Sum_probs=33.7

Q ss_pred             hhhccCCCCCCCCC--------CCcceEEecCCCCCChHhhHHHHhHHHHhhhcCC
Q 029597           99 VVFRKLVGCPGCLC--------HDYDHILPYSKGGKSTLENCQVLQATVNRSKGNR  146 (191)
Q Consensus        99 vl~r~~~~C~~Cg~--------~eVDHIiP~S~GG~d~~~NL~~LC~~CN~~K~n~  146 (191)
                      ++..|++.|+.|+.        ++|||..|.+.+.+.  .=..+||..||...|.-
T Consensus        15 l~e~Q~G~CaiC~~~l~~~~~~~~vDHDH~l~g~~TG--~VRGLLC~~CN~~lG~~   68 (157)
T PHA02565         15 LFEAQNGICPLCKRELDGDVSKNHLDHDHELNGPNAG--RVRGLLCNLCNALEGQM   68 (157)
T ss_pred             HHHHhCCcCCCCCCccCCCccccccCCCCCCCCcccc--cccccCchhhhhhhhhh
Confidence            45567799999985        379999988632211  12679999999988865

>COG3183 Predicted restriction endonuclease [Defense mechanisms]

Probab=93.38  E-value=0.039  Score=48.84  Aligned_cols=59  Identities=17%  Similarity=0.184  Sum_probs=43.0

Q ss_pred             hhhccCCCCCCCCC------------C-CcceEEecCCCC--C--ChHhhHHHHhHHHHhhhcCCCc--cchhHHhhh
Q 029597           99 VVFRKLVGCPGCLC------------H-DYDHILPYSKGG--K--STLENCQVLQATVNRSKGNRTE--LSRSDLIQK  157 (191)
Q Consensus        99 vl~r~~~~C~~Cg~------------~-eVDHIiP~S~GG--~--d~~~NL~~LC~~CN~~K~n~~~--~~~~el~~~  157 (191)
                      ++.-....|..|+-            + +|||++|.+.-+  .  +...-|.++|+.||..-+..-+  .+..|++.+
T Consensus       190 ~Ia~~G~vC~vC~fdF~k~YGe~gKgyIeVHH~~piae~e~~~~vnp~tDL~plCpNCH~mvHrr~~~~lS~~elk~l  267 (272)
T COG3183         190 AIAIHGTVCDVCEFDFQKKYGEIGKGYIEVHHKIPIAEFEGEYHVNPLTDLAPLCPNCHKMVHRRRDRNLSVEELKIL  267 (272)
T ss_pred             HHHHhCceeeecCccHHHHhhhhccCeEEEeeccchhhhcCccccCchhhhhhcCccHHHHHhccCCcCCCHHHHHHH
Confidence            45555577999973            1 999999998532  2  3456899999999999876554  466676655

>PF06147 DUF968: Protein of unknown function (DUF968); InterPro: IPR010373 This is a family of uncharacterised prophage proteins that are also found in bacteria and humans

Probab=93.21  E-value=0.071  Score=45.07  Aligned_cols=42  Identities=19%  Similarity=0.111  Sum_probs=32.5

Q ss_pred             CCCCCCCCCC--CcceEEecCCCCCC---hHhhHHHHhHHHHhhhcC
Q 029597          104 LVGCPGCLCH--DYDHILPYSKGGKS---TLENCQVLQATVNRSKGN  145 (191)
Q Consensus       104 ~~~C~~Cg~~--eVDHIiP~S~GG~d---~~~NL~~LC~~CN~~K~n  145 (191)
                      ...|..||..  +++|++....||..   .-..+.+||..||...++
T Consensus       127 ~~~C~iCGk~~~d~hH~iG~g~~~~~~~~~d~~~ipLCr~hH~e~H~  173 (200)
T PF06147_consen  127 SRPCVICGKPPADIHHIIGMGRGRMGIKHHDLFVIPLCREHHRELHR  173 (200)
T ss_pred             cCccccCCCCccccceeeccccCccccccCCCeehhccHHHHHHHhC
Confidence            3589999974  99999776544433   334899999999999888

>PF13391 HNH_2: HNH endonuclease

Probab=92.93  E-value=0.025  Score=38.28  Aligned_cols=31  Identities=23%  Similarity=0.372  Sum_probs=25.4

Q ss_pred             CcceEEecCCC--CCC-----------hHhhHHHHhHHHHhhhc
Q 029597          114 DYDHILPYSKG--GKS-----------TLENCQVLQATVNRSKG  144 (191)
Q Consensus       114 eVDHIiP~S~G--G~d-----------~~~NL~~LC~~CN~~K~  144 (191)
                      ++-||+|++.+  +.+           +.+|+.+||..+|..=.
T Consensus        16 eaaHI~P~s~~~~~~~~~~~~~~~~~~~~~Ngl~L~~~lH~~fd   59 (66)
T PF13391_consen   16 EAAHIVPFSLGSWWMNNWFGEYANDWISPSNGLLLRPDLHKLFD   59 (66)
T ss_pred             EEEEcccCccCCCchhhhhhhhhccCCCccEEEEcCHhHHHHHC
Confidence            78899999986  555           67899999999998643

>PF09665 RE_Alw26IDE: Type II restriction endonuclease (RE_Alw26IDE); InterPro: IPR014328 There are four classes of restriction endonucleases: types I, II,III and IV

Probab=91.06  E-value=0.06  Score=51.12  Aligned_cols=42  Identities=33%  Similarity=0.248  Sum_probs=34.4

Q ss_pred             CCcceEEecCCCCCChHhhHHHHhHHHHhhhcCCCccchhHHhhh
Q 029597          113 HDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRSDLIQK  157 (191)
Q Consensus       113 ~eVDHIiP~S~GG~d~~~NL~~LC~~CN~~K~n~~~~~~~el~~~  157 (191)
                      ...|||=|+|.|-...+ +.+++|..||.+|.++..  ..+++.+
T Consensus       257 ~SaDHIGPISlGF~h~P-~Fqplc~~cNSaKnnR~~--lsDV~~L  298 (511)
T PF09665_consen  257 LSADHIGPISLGFVHRP-RFQPLCKSCNSAKNNRMY--LSDVKKL  298 (511)
T ss_pred             cCccccCCcccccccCc-ccccccccccccccccee--HHHHHHH
Confidence            38999999999988766 669999999999999985  3444444

All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction endonucleases of the Alw26I/Eco31I/Esp3I family [], whose recognition sequences are 5'-GTCTC-3' (Alw26I), 5'-GGTCTC-3' (Eco31I) and 5'-CGTCTC-3' (Esp3I).

>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family

Probab=89.67  E-value=0.17  Score=49.73  Aligned_cols=29  Identities=28%  Similarity=0.300  Sum_probs=23.2

Q ss_pred             hhhccCCCCCCCCCC-----CcceEEecCCCCCC
Q 029597           99 VVFRKLVGCPGCLCH-----DYDHILPYSKGGKS  127 (191)
Q Consensus        99 vl~r~~~~C~~Cg~~-----eVDHIiP~S~GG~d  127 (191)
                      +.....+.|+|||+.     ++|||+|+|+.+..
T Consensus       755 Ik~fs~gIcpY~Ga~iG~~gEiDHI~PRSht~k~  788 (802)
T TIGR03031       755 IKNFSMGICPYKGASIGGQGEIDHIYPRSHSKKH  788 (802)
T ss_pred             HHHHhccCCCCCCCCCCCcccccccccccccccc
Confidence            444567899999974     99999999986653

Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to PFAM model pfam01844, HNH endonuclease.

>PF05766 NinG: Bacteriophage Lambda NinG protein; InterPro: IPR008713 The ninR region of phage lambda contains two recombination genes, ninB (also known as orf) and ninG (also known as rap)

Probab=89.35  E-value=0.089  Score=44.47  Aligned_cols=54  Identities=20%  Similarity=0.148  Sum_probs=42.0

Q ss_pred             CCCCCCCCC-----CCcceEEecCCCCCC--hHhhHHHHhHHHHhhhcCCCccchhHHhhh
Q 029597          104 LVGCPGCLC-----HDYDHILPYSKGGKS--TLENCQVLQATVNRSKGNRTELSRSDLIQK  157 (191)
Q Consensus       104 ~~~C~~Cg~-----~eVDHIiP~S~GG~d--~~~NL~~LC~~CN~~K~n~~~~~~~el~~~  157 (191)
                      +..|.+||.     |+.-|......-...  +..|+-..|..||..++.....+...|+..
T Consensus        87 ~~~CiSCG~~~~~~~dagHy~s~g~~~~lRF~~~N~~~qC~~CN~~~sgn~~~Yr~~Li~k  147 (189)
T PF05766_consen   87 GKPCISCGRKHGGQWDAGHYRSRGAAPELRFNEDNIHAQCKHCNRHLSGNIVEYRIGLIEK  147 (189)
T ss_pred             CCCcccCCCcCCCCcccccccccccCcccccChhhHhHcCCccccccccCHHHHHHHHHHH
Confidence            468999996     588898776332333  567999999999999998877777777765

These genes are involved in the RecF and RecBCD recombination pathways of Escherichia coli that operate on phage lambda [, ]. NinB and NinG participate in Red recombination, the primary pathway operating when wild-type lambda grows lytically in rec+ cells [].

>COG3440 Predicted restriction endonuclease [Defense mechanisms]

Probab=89.04  E-value=0.11  Score=46.76  Aligned_cols=44  Identities=18%  Similarity=0.136  Sum_probs=37.3

Q ss_pred             hhhccCCCCCCCCC----------CCcceEEecCCCCCChHhhHHHHhHHHHhh
Q 029597           99 VVFRKLVGCPGCLC----------HDYDHILPYSKGGKSTLENCQVLQATVNRS  142 (191)
Q Consensus        99 vl~r~~~~C~~Cg~----------~eVDHIiP~S~GG~d~~~NL~~LC~~CN~~  142 (191)
                      |+..-+++|+.||-          -+.-||.|.+++|++.+.|...||..+|..
T Consensus       187 V~~~Y~~RCalCG~e~~~~~~q~ii~~ahikp~~q~y~~~i~N~LaLC~nHh~~  240 (301)
T COG3440         187 VLRQYDYRCALCGLEVLDFLEQNIIKAAHIKPFQQFYPDRIINGLALCKNHHWA  240 (301)
T ss_pred             HHHHhcchhhhhcchhhhhhHHHHhhhhhcCcccccCcccccccchhchhhHHH
Confidence            45556789999993          167899999999999999999999888865

>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon

Probab=86.80  E-value=0.59  Score=31.06  Aligned_cols=42  Identities=21%  Similarity=0.178  Sum_probs=27.8

Q ss_pred             hhhccCCCCCCCCCC--CcceEEecCCCCCChHhhHHHHhHHHHhh
Q 029597           99 VVFRKLVGCPGCLCH--DYDHILPYSKGGKSTLENCQVLQATVNRS  142 (191)
Q Consensus        99 vl~r~~~~C~~Cg~~--eVDHIiP~S~GG~d~~~NL~~LC~~CN~~  142 (191)
                      ++.|.+..|..|+..  ..-|-+|-+.+  ...+|.+++|..|+..
T Consensus         2 L~~Rs~~kCELC~a~~~L~vy~Vpp~~~--~~~d~~iliC~tC~~Q   45 (47)
T smart00782        2 LLARCESKCELCGSDSPLVVYAVPPSSD--VTADNSVMLCDTCHSQ   45 (47)
T ss_pred             hhHHcCCcccCcCCCCCceEEecCCCCC--CCccceeeechHHHHh
Confidence            345667899999974  23333444333  3467889999999853

This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	191
2qgp_A	112	HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, stru	4e-04

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
2qgp_A	112	HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, stru	99.36
3m7k_A	142	Restriction endonuclease PACI; HNH restriction end	93.26
1e7l_A	157	GP49, recombination endonuclease VII; resolvase, h	87.83
7cei_B	206	Protein (colicin E7 immunity protein); DNAse, E-gr	84.98

>3m7k_A Restriction endonuclease PACI; HNH restriction endonuclease, beta-BETA-alpha-metal active S base-PAIR RARE cutter; HET: DNA; 1.92A {Pseudomonas alcaligenes} PDB: 3ldy_A*

Probab=93.26  E-value=0.0092  Score=46.79  Aligned_cols=22  Identities=23%  Similarity=0.161  Sum_probs=19.9

Q ss_pred             hHhhHHHHhHHHHhhhcCCCcc
Q 029597          128 TLENCQVLQATVNRSKGNRTEL  149 (191)
Q Consensus       128 ~~~NL~~LC~~CN~~K~n~~~~  149 (191)
                      +.+||.++|..||+.|++.+..
T Consensus       101 s~dNLaLAC~~CNnaKsdk~ta  122 (142)
T 3m7k_A          101 SPQNARLACFICNRIKSNIFSA  122 (142)
T ss_dssp             CTTTEEEECHHHHHHHTTTSCH
T ss_pred             CHHHHHHHHHHHhccccccccc
Confidence            5789999999999999999864

>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*

Probab=87.83  E-value=0.13  Score=41.12  Aligned_cols=44  Identities=18%  Similarity=0.232  Sum_probs=31.5

Q ss_pred             hhhccCCCCCCCCCC--------CcceEEecCCCCCChHhhHH-HHhHHHHhhhcC
Q 029597           99 VVFRKLVGCPGCLCH--------DYDHILPYSKGGKSTLENCQ-VLQATVNRSKGN  145 (191)
Q Consensus        99 vl~r~~~~C~~Cg~~--------eVDHIiP~S~GG~d~~~NL~-~LC~~CN~~K~n  145 (191)
                      ++..|++.|+.|+..        +|||..+.. |..+  .+.+ +||..||...|.
T Consensus        15 l~~~Q~g~C~IC~~~l~~~~~~~~vDHdH~~~-g~~t--G~VRGlLC~~CN~~lG~   67 (157)
T 1e7l_A           15 FYDAQNGKCLICQRELNPDVQANHLDHDHELN-GPKA--GKVRGLLCNLCDAAEGQ   67 (157)
T ss_dssp             HHHHTTTBCTTTCCBCCSSGGGSEEEECCCCS-STTT--TBEEEEECHHHHHHHHH
T ss_pred             HHHHhCCcCcccCCccccccccccccCCCCCC-CCCC--CcchhhccHhHhchhcc
Confidence            345677899999862        789998775 2221  2555 899999998654

>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1

Probab=84.98  E-value=0.35  Score=40.07  Aligned_cols=77  Identities=18%  Similarity=0.289  Sum_probs=46.4

Q ss_pred             CCCCCCC--HHHHHHHHHhcccccCCCCcchhhhcccchhhccCCCCCCC------C---CCCcceEEecCCCCCC-hHh
Q 029597           63 ANPRSFP--YSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGC------L---CHDYDHILPYSKGGKS-TLE  130 (191)
Q Consensus        63 ~~~r~f~--~~~k~~~W~~~~~~~g~dp~r~R~d~~gnvl~r~~~~C~~C------g---~~eVDHIiP~S~GG~d-~~~  130 (191)
                      ...|.|.  ..+|.++|..-.    -||+....=.-.|.-.-..+.-++-      |   .+++||+.|++.||.- +++
T Consensus       114 LRGR~F~sFD~FR~AFWkeVa----~DPeLskQF~~~N~~~Mk~G~AP~ap~~e~vG~R~kfELHH~~~I~~GG~VYDiD  189 (206)
T 7cei_B          114 LRDKEFKSFDDFRKKFWEEVS----KDPELSKQFSRNNNDRMKVGKAPKTRTQDVSGKRTSFELHHEKPISQNGGVYDMD  189 (206)
T ss_dssp             HTTCBCSSHHHHHHHHHHHHT----TCTTTGGGSCHHHHHHHHTTCCCBCCGGGCBTTBCBCEEEESSCSSSSCCSSBTT
T ss_pred             hcCCcCCCHHHHHHHHHHHHc----cCHHHHHHHhHHHHHHHHCCCCCCCChhhhcCCeeeEEeecCcccccCCeeeccc
Confidence            4566676  789999997532    2232222111112211112232322      2   2699999999999985 899


Q ss_pred             hHHHHhHHHHhhh
Q 029597          131 NCQVLQATVNRSK  143 (191)
Q Consensus       131 NL~~LC~~CN~~K  143 (191)
                      ||+++-+.-|..-
T Consensus       190 NLrI~TPK~Hiei  202 (206)
T 7cei_B          190 NISVVTPKRHIDI  202 (206)
T ss_dssp             SEEEECHHHHHHT
T ss_pred             ceeecChHHHHhh
Confidence            9999888777653

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00