Citrus Sinensis ID: 029605

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTEA
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHccccccHHHHHccccEEEEEEEEEEEcccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcEEcccccccccccccccccHHHHHHHHHHHHccHHHHcccEEEEEEcccEEEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHEccccccccHHHHHHHHHHHHHHHccHHHHHHHHHcEEEcEEEEEEccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHcccccHEcccEEEEEEcccEEEEEEEcHHHcccHHHHHHHHHHHHHHHccccEEEEEccccc
Coil and Loop (DISEMBL)
mfsaqkkihkdkdaepteFEESVAQAVFDLENTNQELKSELKDLYINsamqidvpgnrkavVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRrilrppkkgsavqrprsrtLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFldpkernnteykLDTFAAVYRKLsgkdvvfdfpvtea
Flexible Loop (DISEMBL)
mfsaqkkihkdkdaeptefEESVAQAVFDLENTNQELKSELKDLYINSAmqidvpgnrkaVVIHIPYRLRKAYRKIHTKLVrelekkfsgkdviliatrrilrppkkgsavqrprsrtltsvheamledvvlpaeivgkriryrldgskimkvfldpkernnteyKLDTFAAVYRKLSGKDVVFDFPVTEA
Low Complexity Region (SEG)
MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTEA
Disordered region (IsUnstruct)
***************************************ELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL*******************VHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFP****
Disordered Region (DISOPRED)
******************FEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATR******************TLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVT**
Disordered Region (DISEMBL)
*******************EESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRP***************TSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTEA
Disordered Region (DISPRO)
*****KKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRP**********RSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVT**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFSAQKKIHKDKDAEPTEFEESVAQAxxxxxxxxxxxxxxxxxxxxxSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTEA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	191	2.2.26 [Sep-21-2011]
Q9ZNS1	190	40S ribosomal protein S7	N/A	no	0.994	1.0	0.826	5e-91
Q9C514	191	40S ribosomal protein S7-	yes	no	1.0	1.0	0.801	3e-89
Q8LJU5	192	40S ribosomal protein S7	yes	no	1.0	0.994	0.774	7e-88
Q8LD03	190	40S ribosomal protein S7-	no	no	0.984	0.989	0.808	1e-87
Q9XH45	191	40S ribosomal protein S7	N/A	no	0.994	0.994	0.789	3e-87
Q9M885	191	40S ribosomal protein S7-	no	no	1.0	1.0	0.790	3e-87
Q9XET4	192	40S ribosomal protein S7	N/A	no	1.0	0.994	0.764	4e-86
Q949H0	191	40S ribosomal protein S7	N/A	no	0.994	0.994	0.748	8e-84
Q90YR7	194	40S ribosomal protein S7	N/A	no	0.973	0.958	0.544	3e-53
P62084	194	40S ribosomal protein S7	yes	no	0.973	0.958	0.534	5e-53

>sp|Q9ZNS1|RS7_AVIMR 40S ribosomal protein S7 OS=Avicennia marina GN=RPS7 PE=2 SV=1

 Score =  333 bits (853), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 157/190 (82%), Positives = 181/190 (95%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           M++A +KIHKDKDAEPTEFEE+VAQA+FD ENTNQE+KS+LKDLYINSA+QIDV G +KA
Sbjct: 1   MYTALQKIHKDKDAEPTEFEENVAQALFDFENTNQEIKSDLKDLYINSALQIDVSGGKKA 60

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
           VVIH+PYRLRK++RKIH +LVRELEKKFSGK+V+LIATRRILRPPKKGSAVQRPRSRTLT
Sbjct: 61  VVIHVPYRLRKSFRKIHPRLVRELEKKFSGKEVVLIATRRILRPPKKGSAVQRPRSRTLT 120

Query: 121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
           +VH+AMLED+V PAEIVGKR+RYRLDGSKIMKVFLDPK +N+TE KL+TFA VYRKLSGK
Sbjct: 121 AVHDAMLEDIVYPAEIVGKRVRYRLDGSKIMKVFLDPKAKNDTENKLETFAGVYRKLSGK 180

Query: 181 DVVFDFPVTE 190
           DVVF+FP+TE
Sbjct: 181 DVVFEFPLTE 190

Avicennia marina (taxid: 82927)

>sp|Q9C514|RS71_ARATH 40S ribosomal protein S7-1 OS=Arabidopsis thaliana GN=RPS7A PE=2 SV=1

 Score =  327 bits (838), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 153/191 (80%), Positives = 178/191 (93%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           MFSAQ KIHK+K  E +E +E VAQA FDLENTNQELKSELKDLY+NSA+Q+D+ G RKA
Sbjct: 1   MFSAQHKIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKA 60

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
           +V+++PYRLRKAYRKIH +LVRELEKKFSGKDVILIATRRI+RPPKKGSA +RPR+RTLT
Sbjct: 61  IVVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAAKRPRNRTLT 120

Query: 121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
           SVHEA+L+DVVLPAEIVGKR RYRLDG+KIMKVFLDPKERNNTEYK++ F+AVY+KL+GK
Sbjct: 121 SVHEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGK 180

Query: 181 DVVFDFPVTEA 191
           DVVF+FP+TEA
Sbjct: 181 DVVFEFPITEA 191

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LJU5|RS7_ORYSJ 40S ribosomal protein S7 OS=Oryza sativa subsp. japonica GN=RPS7 PE=2 SV=2

 Score =  322 bits (826), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 148/191 (77%), Positives = 177/191 (92%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           M++A++KI KDK  EPTEFE++VAQA FDLEN NQELKS+LKDLYIN A+Q+D+PGNRKA
Sbjct: 1   MYTARRKIQKDKGLEPTEFEDTVAQAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKA 60

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
           V+I++PYRLRKAY+KIH +LVRELEKKFSGKDV+L+ATRRI+RPPKKGSAV RPR+RTLT
Sbjct: 61  VIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVVRPRTRTLT 120

Query: 121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
           +VH+ +LEDVV PAEIVGKR+RY LDG KIMK+FLDPKERNNTEYKLDTF++VYR+L GK
Sbjct: 121 AVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGK 180

Query: 181 DVVFDFPVTEA 191
           DVVFD+P+TE 
Sbjct: 181 DVVFDYPMTET 191

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8LD03|RS73_ARATH 40S ribosomal protein S7-3 OS=Arabidopsis thaliana GN=RPS7C PE=2 SV=2

 Score =  322 bits (824), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 152/188 (80%), Positives = 171/188 (90%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           MFSAQ KI KDK+AEPTE EE VAQA+FDLENTNQELKSELKDLYIN A+ +D+ GNRKA
Sbjct: 1   MFSAQNKIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKA 60

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
           VVI++P+RLRKA+RKIH +LVRELEKKFSGKDVI + TRRI+RPPKKG+AVQRPR+RTLT
Sbjct: 61  VVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAVQRPRNRTLT 120

Query: 121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
           SVHEAMLEDV  PAEIVGKR RYRLDGSKIMKVFLD KE+NNTEYKL+T   VYRKL+GK
Sbjct: 121 SVHEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGK 180

Query: 181 DVVFDFPV 188
           DVVF++PV
Sbjct: 181 DVVFEYPV 188

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XH45|RS7_BRAOL 40S ribosomal protein S7 OS=Brassica oleracea GN=RPS7 PE=2 SV=1

 Score =  320 bits (821), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 150/190 (78%), Positives = 172/190 (90%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           MFSAQ KIHKDK   PTEFEE VAQA FDLENTNQELKS+LKDLYIN A+ +D+ GNRKA
Sbjct: 1   MFSAQNKIHKDKGVAPTEFEERVAQAFFDLENTNQELKSDLKDLYINQAVSMDIAGNRKA 60

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
           VVI++P+RLRKA+RKIH++LVRELEKKFSG DVI +ATRRI+RPPKKGSAVQRPR+RTLT
Sbjct: 61  VVIYVPFRLRKAFRKIHSRLVRELEKKFSGNDVIFVATRRIMRPPKKGSAVQRPRNRTLT 120

Query: 121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
           SVHEAMLEDV  PAEIVGKR RYR+DG+KIMKV+L+PKERNNTEYKL+T   VYRKL+GK
Sbjct: 121 SVHEAMLEDVAYPAEIVGKRTRYRVDGTKIMKVYLEPKERNNTEYKLETMVGVYRKLTGK 180

Query: 181 DVVFDFPVTE 190
           DVVF++PV +
Sbjct: 181 DVVFEYPVAD 190

Brassica oleracea (taxid: 3712)

>sp|Q9M885|RS72_ARATH 40S ribosomal protein S7-2 OS=Arabidopsis thaliana GN=RPS7B PE=2 SV=1

 Score =  320 bits (821), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 151/191 (79%), Positives = 171/191 (89%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           M+S Q KIHKDK   PTEFEE V QA+FDLENTNQELKSELKDLYIN A+Q+D+ GNRKA
Sbjct: 1   MYSGQNKIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKA 60

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
           VVI++P+RLRKA+RKIH +LVRELEKKFSGKDVI +ATRRI+RPPKKGSAVQRPR+RTLT
Sbjct: 61  VVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAVQRPRNRTLT 120

Query: 121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
           SVHEAMLEDV  PAEIVGKR RYRLDG+KIMKVFLD K +N+TEYKL+T   VYRKL+GK
Sbjct: 121 SVHEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGK 180

Query: 181 DVVFDFPVTEA 191
           DVVF++PV EA
Sbjct: 181 DVVFEYPVIEA 191

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XET4|RS7_SECCE 40S ribosomal protein S7 OS=Secale cereale GN=RPS7 PE=2 SV=1

 Score =  317 bits (811), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 146/191 (76%), Positives = 174/191 (91%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           M++A+KKI KDK  EP+EFE++VAQA FDLEN NQELKS++KDLYIN+A Q+DV GNRKA
Sbjct: 1   MYTARKKIQKDKGLEPSEFEDTVAQAFFDLENGNQELKSDVKDLYINAAFQMDVAGNRKA 60

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
           VVIH+PYRLRK +RKIH +LVRELEKKFSGKDV+++ATRRI+RPPKKGSAV RPR+RTLT
Sbjct: 61  VVIHVPYRLRKNFRKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAVVRPRTRTLT 120

Query: 121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
           +VH+ +LEDVV PAEIVGKR+RYRLDGSKI+K+FLDP ERNNTEYKLDTF AVYR+L GK
Sbjct: 121 AVHDGLLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPMERNNTEYKLDTFTAVYRRLCGK 180

Query: 181 DVVFDFPVTEA 191
           DVV+++PV E 
Sbjct: 181 DVVYEYPVAET 191

Secale cereale (taxid: 4550)

>sp|Q949H0|RS7_HORVU 40S ribosomal protein S7 OS=Hordeum vulgare GN=RPS7 PE=2 SV=1

 Score =  309 bits (791), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 143/191 (74%), Positives = 175/191 (91%), Gaps = 1/191 (0%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           M++A+KKI KDK  EP+EFE++VAQA FDLEN NQELKS+LKDLYIN+A+Q+DV GNRKA
Sbjct: 1   MYTARKKIQKDKGVEPSEFEDTVAQAFFDLENGNQELKSDLKDLYINTAIQMDVVGNRKA 60

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
           VVIH+PYRLRK +RKIH +LVRELE+  SGKDV+ +ATRRI+RPPKKGSAVQRPR+RTLT
Sbjct: 61  VVIHVPYRLRKPFRKIHVRLVRELER-VSGKDVVFVATRRIVRPPKKGSAVQRPRTRTLT 119

Query: 121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
           +VH+ +LEDVV PAEIVGKR+RYRLDG+K++K++LDPKERNNTEYKL+TF+AVYR+L GK
Sbjct: 120 AVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRLCGK 179

Query: 181 DVVFDFPVTEA 191
           DVVF++PV E 
Sbjct: 180 DVVFEYPVAET 190

Hordeum vulgare (taxid: 4513)

>sp|Q90YR7|RS7_ICTPU 40S ribosomal protein S7 OS=Ictalurus punctatus GN=rps7 PE=2 SV=1

 Score =  207 bits (528), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 104/191 (54%), Positives = 145/191 (75%), Gaps = 5/191 (2%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           MFS+  KI K    +P EFE  ++QA+ +LE  N +LK++L++L I +A +I+V G+RKA
Sbjct: 1   MFSSSAKIVKANGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGSRKA 59

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQ----RPRS 116
           ++I +P    KA++KI  +LVRELEKKFSGK V+ IA RRIL  P + S  +    RPRS
Sbjct: 60  IIIFVPVPQLKAFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRS 119

Query: 117 RTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRK 176
           RTLT+VH+A+LED+V P+EIVGKRIR +LD S+++KV LD  ++NN E+K++TFA VY+K
Sbjct: 120 RTLTAVHDAILEDLVYPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKK 179

Query: 177 LSGKDVVFDFP 187
           L+GKDVVF+FP
Sbjct: 180 LTGKDVVFEFP 190

Ictalurus punctatus (taxid: 7998)

>sp|P62084|RS7_DANRE 40S ribosomal protein S7 OS=Danio rerio GN=rps7 PE=2 SV=1

 Score =  207 bits (526), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 145/191 (75%), Gaps = 5/191 (2%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           MFS   KI K    +P EFE  ++QA+ +LE  N +LK++L++L+I +A +I+V G+RKA
Sbjct: 1   MFSTSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELHITAAKEIEVGGSRKA 59

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQ----RPRS 116
           ++I +P    K+++KI  +LVRELEKKFSGK V+ IA RRIL  P + S  +    RPRS
Sbjct: 60  IIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRS 119

Query: 117 RTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRK 176
           RTLT+VH+A+LED+V P+EIVGKRIR +LD S+++KV LD  ++NN E+K++TFA VY+K
Sbjct: 120 RTLTNVHDAILEDLVFPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKK 179

Query: 177 LSGKDVVFDFP 187
           L+GKDV+F+FP
Sbjct: 180 LTGKDVIFEFP 190

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
255586077	191	40S ribosomal protein S7, putative [Rici	1.0	1.0	0.874	1e-95
351727497	191	uncharacterized protein LOC100527680 [Gl	1.0	1.0	0.863	6e-95
356531198	191	PREDICTED: 40S ribosomal protein S7 [Gly	1.0	1.0	0.863	8e-95
255626331	190	unknown [Glycine max]	0.994	1.0	0.863	3e-94
351726972	191	uncharacterized protein LOC100527642 [Gl	1.0	1.0	0.858	4e-94
217075354	191	unknown [Medicago truncatula]	1.0	1.0	0.869	8e-94
217071198	191	unknown [Medicago truncatula] gi|3884939	1.0	1.0	0.869	9e-94
357496953	191	40S ribosomal protein S7-like protein [M	1.0	1.0	0.869	1e-93
225455966	191	PREDICTED: 40S ribosomal protein S7 isof	1.0	1.0	0.863	3e-93
388504256	191	unknown [Medicago truncatula]	1.0	1.0	0.869	3e-93

>gi|255586077|ref|XP_002533703.1| 40S ribosomal protein S7, putative [Ricinus communis] gi|223526398|gb|EEF28686.1| 40S ribosomal protein S7, putative [Ricinus communis]

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 167/191 (87%), Positives = 186/191 (97%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           M++ ++KIHKDKDAEP+EFEESVAQA+FDLENTN ELKS++KDLYINSA+QIDV GNRKA
Sbjct: 1   MYTTKQKIHKDKDAEPSEFEESVAQALFDLENTNSELKSDMKDLYINSAVQIDVAGNRKA 60

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
           VVIH+PYRLRKAYRKIH +LVRELEKKFSGKDVILIATRRI+RPPKKGSAVQRPR+RTLT
Sbjct: 61  VVIHVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAVQRPRTRTLT 120

Query: 121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
           +VHEAMLED+VLPAEIVGKR RYR+DGSKIMKVFLDPKERNNTEYKL+TF+AVYRKLSGK
Sbjct: 121 AVHEAMLEDIVLPAEIVGKRTRYRIDGSKIMKVFLDPKERNNTEYKLETFSAVYRKLSGK 180

Query: 181 DVVFDFPVTEA 191
           DVVF+FPVTEA
Sbjct: 181 DVVFEFPVTEA 191

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727497|ref|NP_001235883.1| uncharacterized protein LOC100527680 [Glycine max] gi|255632936|gb|ACU16822.1| unknown [Glycine max]

 Score =  352 bits (902), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 165/191 (86%), Positives = 186/191 (97%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           M++++KKIHKDKDAEPTEFEESV QA+FDLENTNQELKS+LKDLYINSA+Q+DV GNRKA
Sbjct: 1   MYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNQELKSDLKDLYINSAVQVDVSGNRKA 60

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
           VVIH+PYRLRK +RKIH +LVRELEKKFSGKDVIL+ATRRILRPPKKGSA QRPRSRTLT
Sbjct: 61  VVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILVATRRILRPPKKGSAAQRPRSRTLT 120

Query: 121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
           +VHEAMLEDVVLPAEIVGKR+R+R+DGSKIMKV+LDPKERNNTEYKL+TFAAVYRKLSGK
Sbjct: 121 AVHEAMLEDVVLPAEIVGKRVRFRIDGSKIMKVYLDPKERNNTEYKLETFAAVYRKLSGK 180

Query: 181 DVVFDFPVTEA 191
           DVVF++PV+EA
Sbjct: 181 DVVFEYPVSEA 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531198|ref|XP_003534165.1| PREDICTED: 40S ribosomal protein S7 [Glycine max]

 Score =  351 bits (901), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 165/191 (86%), Positives = 185/191 (96%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           M++++KKIHKDKDAEPTEFEESV QA+FDLENTN ELKS+LKDLYINSA+QIDV GNRKA
Sbjct: 1   MYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNNELKSDLKDLYINSAVQIDVSGNRKA 60

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
           VVIH+PYRLRK +RKIH +LVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPR+RTLT
Sbjct: 61  VVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRTRTLT 120

Query: 121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
           +VHEAMLED+VLPAEIVGKR+RY++DGSKIMKVFLDPKERNNTEYKL+TFAAVYRKLSGK
Sbjct: 121 AVHEAMLEDIVLPAEIVGKRVRYKIDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGK 180

Query: 181 DVVFDFPVTEA 191
           D+VF++P TEA
Sbjct: 181 DIVFEYPTTEA 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255626331|gb|ACU13510.1| unknown [Glycine max]

 Score =  349 bits (896), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 164/190 (86%), Positives = 184/190 (96%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           M++++KKIHKDKDAEPTEFEESV QA+FDLENTN ELKS+LKDLYINSA+QIDV GNRKA
Sbjct: 1   MYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNNELKSDLKDLYINSAVQIDVSGNRKA 60

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
           VVIH+PYRLRK +RKIH +LVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPR+RTLT
Sbjct: 61  VVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRTRTLT 120

Query: 121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
           +VHEAMLED+VLPAEIVGKR+RY++DGSKIMKVFLDPKERNNTEYKL+TFAAVYRKLSGK
Sbjct: 121 AVHEAMLEDIVLPAEIVGKRVRYKIDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGK 180

Query: 181 DVVFDFPVTE 190
           D+VF++P TE
Sbjct: 181 DIVFEYPTTE 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726972|ref|NP_001235353.1| uncharacterized protein LOC100527642 [Glycine max] gi|255632842|gb|ACU16774.1| unknown [Glycine max]

 Score =  348 bits (894), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 164/191 (85%), Positives = 184/191 (96%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           M +++KKIHKDKDAEPTEFEESV QA+FDLENTN ELKS+LKDLYINSA+QIDV GNRKA
Sbjct: 1   MCTSRKKIHKDKDAEPTEFEESVGQALFDLENTNNELKSDLKDLYINSAVQIDVSGNRKA 60

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
           V+IH+PYRLRK +RKIH +LVRELEKKFSGKDVILIATRRI+RPPKKGSAVQRPR+RTLT
Sbjct: 61  VIIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAVQRPRTRTLT 120

Query: 121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
           +VHEAMLED+VLPAEIVGKR+RY++DGSKIMKVFLDPKERNNTEYKL+TFAAVYRKLSGK
Sbjct: 121 AVHEAMLEDIVLPAEIVGKRVRYKIDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGK 180

Query: 181 DVVFDFPVTEA 191
           DVVF++P TEA
Sbjct: 181 DVVFEYPTTEA 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075354|gb|ACJ86037.1| unknown [Medicago truncatula]

 Score =  348 bits (892), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 166/191 (86%), Positives = 182/191 (95%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           MF+++KKI KDK AEPTEFEESV QA+FDLENTN ELKSELKDLYINSA+Q+DV GNRKA
Sbjct: 1   MFTSRKKISKDKGAEPTEFEESVGQALFDLENTNHELKSELKDLYINSAVQVDVSGNRKA 60

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
           VVIH+PYRLRK +RKIH +LVRELEKKFSGKDVILIATRRI+RPPKKGSA QRPRSRTLT
Sbjct: 61  VVIHVPYRLRKGFRKIHARLVRELEKKFSGKDVILIATRRIVRPPKKGSAAQRPRSRTLT 120

Query: 121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
           +VHEAMLEDVVLPAEIVGKR RYR+DGSKIMKVFLDPKERNNTEYKL+TF+AVYRKLSGK
Sbjct: 121 AVHEAMLEDVVLPAEIVGKRTRYRIDGSKIMKVFLDPKERNNTEYKLETFSAVYRKLSGK 180

Query: 181 DVVFDFPVTEA 191
           DVVF++PVTEA
Sbjct: 181 DVVFEYPVTEA 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071198|gb|ACJ83959.1| unknown [Medicago truncatula] gi|388493938|gb|AFK35035.1| unknown [Medicago truncatula]

 Score =  348 bits (892), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 166/191 (86%), Positives = 182/191 (95%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           MF+++KKI KDK AEPTEFEESV QA+FDLENTN ELKSELKDLYINSA+Q+DV GNRKA
Sbjct: 1   MFTSRKKISKDKGAEPTEFEESVGQALFDLENTNHELKSELKDLYINSAVQVDVSGNRKA 60

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
           VVIH+PYRLRK +RKIH +LVRELEKKFSGKDVILIATRRI+RPPKKGSA QRPRSRTLT
Sbjct: 61  VVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAAQRPRSRTLT 120

Query: 121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
           +VHEAMLEDVVLPAEIVGKR RYR+DGSKIMKVFLDPKERNNTEYKL+TF+AVYRKLSGK
Sbjct: 121 AVHEAMLEDVVLPAEIVGKRTRYRIDGSKIMKVFLDPKERNNTEYKLETFSAVYRKLSGK 180

Query: 181 DVVFDFPVTEA 191
           DVVF++PVTEA
Sbjct: 181 DVVFEYPVTEA 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357496953|ref|XP_003618765.1| 40S ribosomal protein S7-like protein [Medicago truncatula] gi|355493780|gb|AES74983.1| 40S ribosomal protein S7-like protein [Medicago truncatula] gi|388492530|gb|AFK34331.1| unknown [Medicago truncatula]

 Score =  347 bits (890), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 166/191 (86%), Positives = 182/191 (95%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           MF+++KKI KDK AEPTEFEESV QA+FDLENTN ELKSELKDLYINSA+Q+DV GNRKA
Sbjct: 1   MFTSRKKISKDKGAEPTEFEESVGQALFDLENTNHELKSELKDLYINSAVQVDVSGNRKA 60

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
           VVIH+PYRLRK +RKIH +LVRELEKKFSGKDVILIATRRI+RPPKKGSA QRPRSRTLT
Sbjct: 61  VVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAAQRPRSRTLT 120

Query: 121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
           +VHEAMLEDVVLPAEIVGKR RYR+DGSKIMKVFLDPKERNNTEYKL+TF+AVYRKLSGK
Sbjct: 121 AVHEAMLEDVVLPAEIVGKRTRYRVDGSKIMKVFLDPKERNNTEYKLETFSAVYRKLSGK 180

Query: 181 DVVFDFPVTEA 191
           DVVF++PVTEA
Sbjct: 181 DVVFEYPVTEA 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455966|ref|XP_002278371.1| PREDICTED: 40S ribosomal protein S7 isoform 1 [Vitis vinifera] gi|147789484|emb|CAN71757.1| hypothetical protein VITISV_000603 [Vitis vinifera] gi|297734220|emb|CBI15467.3| unnamed protein product [Vitis vinifera]

 Score =  346 bits (887), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 165/191 (86%), Positives = 183/191 (95%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           M++A +KI KDKD+EPTEFEESVAQA FDLENTN E+KS+LKDLYINSA+Q+DV G RKA
Sbjct: 1   MYTAARKIQKDKDSEPTEFEESVAQAFFDLENTNPEIKSDLKDLYINSALQVDVSGTRKA 60

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
           VVIHIPYRLRKA+RKIH +LVRELEKKFSGKDVI IATRRI+RPPKKGSAVQRPRSRTLT
Sbjct: 61  VVIHIPYRLRKAFRKIHVRLVRELEKKFSGKDVIFIATRRIVRPPKKGSAVQRPRSRTLT 120

Query: 121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
           SVHEAMLED+VLPAEIVGKRIRYRLDGSKI+K+FLDPKERNNTEYKL+TFAAVYRKLSGK
Sbjct: 121 SVHEAMLEDIVLPAEIVGKRIRYRLDGSKIIKIFLDPKERNNTEYKLETFAAVYRKLSGK 180

Query: 181 DVVFDFPVTEA 191
           DVVF++P+TEA
Sbjct: 181 DVVFEYPLTEA 191

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504256|gb|AFK40194.1| unknown [Medicago truncatula]

 Score =  346 bits (887), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 166/191 (86%), Positives = 181/191 (94%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           MF+++KKI KDK AEPTEFEESV QA+FDLENTN ELKSELKDLYINSA+Q+DV GNRKA
Sbjct: 1   MFTSRKKISKDKGAEPTEFEESVGQALFDLENTNHELKSELKDLYINSAVQVDVSGNRKA 60

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
           VVIH+PYRLRK +RKIH +LVRELEKKFSGKDVILIATRRI+RPPKKGSA QRPRSRTLT
Sbjct: 61  VVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAAQRPRSRTLT 120

Query: 121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
           +VHEAMLEDVVLPAEIVGKR RYR+DGSKIMKVFLDPKERNNTEYKL+TF AVYRKLSGK
Sbjct: 121 AVHEAMLEDVVLPAEIVGKRTRYRIDGSKIMKVFLDPKERNNTEYKLETFFAVYRKLSGK 180

Query: 181 DVVFDFPVTEA 191
           DVVF++PVTEA
Sbjct: 181 DVVFEYPVTEA 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
TAIR|locus:2200839	191	AT1G48830 [Arabidopsis thalian	1.0	1.0	0.801	5.2e-81
UNIPROTKB|Q8LJU5	192	RPS7 "40S ribosomal protein S7	0.994	0.989	0.778	6e-80
UNIPROTKB|Q10MS5	192	Os03g0297100 "Os03g0297100 pro	0.994	0.989	0.773	9.7e-80
TAIR|locus:2181402	190	AT5G16130 [Arabidopsis thalian	0.984	0.989	0.808	5.4e-79
TAIR|locus:2076839	191	AT3G02560 [Arabidopsis thalian	1.0	1.0	0.790	1.1e-78
UNIPROTKB|A8JGI9	194	RPS7 "Ribosomal protein S7" [C	1.0	0.984	0.658	1.2e-65
UNIPROTKB|F1NN16	201	RPS7 "Uncharacterized protein"	0.973	0.925	0.539	3.6e-50
ZFIN|ZDB-GENE-040426-1718	194	rps7 "ribosomal protein S7" [D	0.973	0.958	0.534	3.6e-50
UNIPROTKB|P50894	194	rps7 "40S ribosomal protein S7	0.973	0.958	0.534	1.2e-49
UNIPROTKB|A6H769	194	RPS7 "40S ribosomal protein S7	0.973	0.958	0.534	2e-49

TAIR|locus:2200839 AT1G48830 [Arabidopsis thaliana (taxid:3702)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 153/191 (80%), Positives = 178/191 (93%)

Query:     1 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
             MFSAQ KIHK+K  E +E +E VAQA FDLENTNQELKSELKDLY+NSA+Q+D+ G RKA
Sbjct:     1 MFSAQHKIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKA 60

Query:    61 VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
             +V+++PYRLRKAYRKIH +LVRELEKKFSGKDVILIATRRI+RPPKKGSA +RPR+RTLT
Sbjct:    61 IVVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAAKRPRNRTLT 120

Query:   121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
             SVHEA+L+DVVLPAEIVGKR RYRLDG+KIMKVFLDPKERNNTEYK++ F+AVY+KL+GK
Sbjct:   121 SVHEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGK 180

Query:   181 DVVFDFPVTEA 191
             DVVF+FP+TEA
Sbjct:   181 DVVFEFPITEA 191

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IBA

GO:0006412 "translation" evidence=IEA;ISS

GO:0030686 "90S preribosome" evidence=IBA

GO:0032040 "small-subunit processome" evidence=IBA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q8LJU5 RPS7 "40S ribosomal protein S7" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 148/190 (77%), Positives = 177/190 (93%)

Query:     1 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
             M++A++KI KDK  EPTEFE++VAQA FDLEN NQELKS+LKDLYIN A+Q+D+PGNRKA
Sbjct:     1 MYTARRKIQKDKGLEPTEFEDTVAQAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKA 60

Query:    61 VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
             V+I++PYRLRKAY+KIH +LVRELEKKFSGKDV+L+ATRRI+RPPKKGSAV RPR+RTLT
Sbjct:    61 VIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVVRPRTRTLT 120

Query:   121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
             +VH+ +LEDVV PAEIVGKR+RY LDG KIMK+FLDPKERNNTEYKLDTF++VYR+L GK
Sbjct:   121 AVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGK 180

Query:   181 DVVFDFPVTE 190
             DVVFD+P+TE
Sbjct:   181 DVVFDYPMTE 190

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0030686 "90S preribosome" evidence=ISS

GO:0032040 "small-subunit processome" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

UNIPROTKB|Q10MS5 Os03g0297100 "Os03g0297100 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 147/190 (77%), Positives = 179/190 (94%)

Query:     1 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
             M++A+KKI K+K  EP+EFE+SVAQA FDLEN NQELKSELKDLYIN+A+Q+D+ GNRKA
Sbjct:     1 MYTARKKIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKA 60

Query:    61 VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
             VVIH+PYRLRKA++KIH +LVRELEKKFSGKDV+++ATRRI+RPPKKGSAVQRPR+RTLT
Sbjct:    61 VVIHVPYRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAVQRPRTRTLT 120

Query:   121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
             +VH+ +LEDVV PAEIVGKRIRYRLDG+K++K+FLDPKERNNTEYKL+TF+AVYR+L GK
Sbjct:   121 AVHDGILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGK 180

Query:   181 DVVFDFPVTE 190
             DV F++P+TE
Sbjct:   181 DVAFEYPMTE 190

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0030686 "90S preribosome" evidence=ISS

GO:0032040 "small-subunit processome" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

TAIR|locus:2181402 AT5G16130 [Arabidopsis thaliana (taxid:3702)]

 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 152/188 (80%), Positives = 171/188 (90%)

Query:     1 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
             MFSAQ KI KDK+AEPTE EE VAQA+FDLENTNQELKSELKDLYIN A+ +D+ GNRKA
Sbjct:     1 MFSAQNKIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKA 60

Query:    61 VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
             VVI++P+RLRKA+RKIH +LVRELEKKFSGKDVI + TRRI+RPPKKG+AVQRPR+RTLT
Sbjct:    61 VVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAVQRPRNRTLT 120

Query:   121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
             SVHEAMLEDV  PAEIVGKR RYRLDGSKIMKVFLD KE+NNTEYKL+T   VYRKL+GK
Sbjct:   121 SVHEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGK 180

Query:   181 DVVFDFPV 188
             DVVF++PV
Sbjct:   181 DVVFEYPV 188

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IBA

GO:0006412 "translation" evidence=IEA;ISS

GO:0030686 "90S preribosome" evidence=IBA

GO:0032040 "small-subunit processome" evidence=IBA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2076839 AT3G02560 [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 151/191 (79%), Positives = 171/191 (89%)

Query:     1 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
             M+S Q KIHKDK   PTEFEE V QA+FDLENTNQELKSELKDLYIN A+Q+D+ GNRKA
Sbjct:     1 MYSGQNKIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKA 60

Query:    61 VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLT 120
             VVI++P+RLRKA+RKIH +LVRELEKKFSGKDVI +ATRRI+RPPKKGSAVQRPR+RTLT
Sbjct:    61 VVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAVQRPRNRTLT 120

Query:   121 SVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 180
             SVHEAMLEDV  PAEIVGKR RYRLDG+KIMKVFLD K +N+TEYKL+T   VYRKL+GK
Sbjct:   121 SVHEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGK 180

Query:   181 DVVFDFPVTEA 191
             DVVF++PV EA
Sbjct:   181 DVVFEYPVIEA 191

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IBA

GO:0006412 "translation" evidence=IEA;ISS

GO:0030686 "90S preribosome" evidence=IBA

GO:0032040 "small-subunit processome" evidence=IBA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

UNIPROTKB|A8JGI9 RPS7 "Ribosomal protein S7" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 127/193 (65%), Positives = 161/193 (83%)

Query:     1 MFSAQ-KKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVP-GNR 58
             M SA+ KKI K++  EP EFEE VAQA+FDLE TN ELK++L+DLYI SA ++DV  G R
Sbjct:     1 MVSARSKKIVKERGQEPDEFEEQVAQALFDLEATNAELKADLRDLYITSAKEVDVANGAR 60

Query:    59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRT 118
             KA++IH+PYRL KA+ KI  +LVRELEKKFSG+DV+++  RRIL PP+ G    RPRSRT
Sbjct:    61 KAIIIHVPYRLLKAFHKIQQRLVRELEKKFSGRDVVIVGNRRILPPPRNGKTASRPRSRT 120

Query:   119 LTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLS 178
             LT+VH+A+L+D+V P EIVGKRIRYRLDGSKI+KV LDPK+RN+TEYKL+TF +VY++L+
Sbjct:   121 LTAVHDAILDDLVYPTEIVGKRIRYRLDGSKILKVHLDPKDRNSTEYKLETFGSVYKRLT 180

Query:   179 GKDVVFDFPVTEA 191
             GKDV F+FPV E+
Sbjct:   181 GKDVSFEFPVAES 193

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0030686 "90S preribosome" evidence=ISS

GO:0032040 "small-subunit processome" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

UNIPROTKB|F1NN16 RPS7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 103/191 (53%), Positives = 145/191 (75%)

Query:     1 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
             MFS+  KI K    +P EFE  ++QA+ +LE  N +LK++L++L I +A +I+V G RKA
Sbjct:     8 MFSSSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKA 66

Query:    61 VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQ----RPRS 116
             ++I +P    K+++KI  +LVRELEKKFSGK V+ IA RRIL  P + S  +    RPRS
Sbjct:    67 IIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRS 126

Query:   117 RTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRK 176
             RTLT+VH+A+LED+V P+EIVGKRIR +LDGS+++KV LD  ++NN E+K++TF+ VY+K
Sbjct:   127 RTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKK 186

Query:   177 LSGKDVVFDFP 187
             L+GKDVVF+FP
Sbjct:   187 LTGKDVVFEFP 197

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IEA

ZFIN|ZDB-GENE-040426-1718 rps7 "ribosomal protein S7" [Danio rerio (taxid:7955)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 102/191 (53%), Positives = 145/191 (75%)

Query:     1 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
             MFS   KI K    +P EFE  ++QA+ +LE  N +LK++L++L+I +A +I+V G+RKA
Sbjct:     1 MFSTSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELHITAAKEIEVGGSRKA 59

Query:    61 VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQ----RPRS 116
             ++I +P    K+++KI  +LVRELEKKFSGK V+ IA RRIL  P + S  +    RPRS
Sbjct:    60 IIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRS 119

Query:   117 RTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRK 176
             RTLT+VH+A+LED+V P+EIVGKRIR +LD S+++KV LD  ++NN E+K++TFA VY+K
Sbjct:   120 RTLTNVHDAILEDLVFPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKK 179

Query:   177 LSGKDVVFDFP 187
             L+GKDV+F+FP
Sbjct:   180 LTGKDVIFEFP 190

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0030686 "90S preribosome" evidence=IBA

GO:0006364 "rRNA processing" evidence=IBA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0032040 "small-subunit processome" evidence=IBA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0030097 "hemopoiesis" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

UNIPROTKB|P50894 rps7 "40S ribosomal protein S7" [Takifugu rubripes (taxid:31033)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 102/191 (53%), Positives = 146/191 (76%)

Query:     1 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
             MFS   KI K    +P EFE  ++QA+ +LE  N +LK++L++L I +A +I+V G+RKA
Sbjct:     1 MFSTSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGSRKA 59

Query:    61 VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL-RPPKKGSAV---QRPRS 116
             ++I +P    K+++KI  +LVRELEKKFSGK V+ IA RRIL +P +K  +    +RPRS
Sbjct:    60 IIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRSKNKQKRPRS 119

Query:   117 RTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRK 176
             RTLTSVH+A+LED+V P+EIVGKRIR ++D S+++KV LD  ++NN E+K++TF+ VY+K
Sbjct:   120 RTLTSVHDAILEDLVFPSEIVGKRIRVKMDSSRLIKVHLDKAQQNNVEHKVETFSGVYKK 179

Query:   177 LSGKDVVFDFP 187
             L+GKDVVF+FP
Sbjct:   180 LTGKDVVFEFP 190

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0030686 "90S preribosome" evidence=ISS

GO:0032040 "small-subunit processome" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

UNIPROTKB|A6H769 RPS7 "40S ribosomal protein S7" [Bos taurus (taxid:9913)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 102/191 (53%), Positives = 144/191 (75%)

Query:     1 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
             MFS+  KI K    +P EFE  ++QA+ +LE  N +LK++L++L I +A +I+V G RKA
Sbjct:     1 MFSSSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKA 59

Query:    61 VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQ----RPRS 116
             ++I +P    K+++KI  +LVRELEKKFSGK V+ IA RRIL  P + S  +    RPRS
Sbjct:    60 IIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRS 119

Query:   117 RTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRK 176
             RTLT+VH+A+LED+V P+EIVGKRIR +LDGS+++KV LD  ++NN E+K++TF+ VY+K
Sbjct:   120 RTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKK 179

Query:   177 LSGKDVVFDFP 187
             L+GKDV F+FP
Sbjct:   180 LTGKDVNFEFP 190

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

GO:0032040 "small-subunit processome" evidence=ISS

GO:0030686 "90S preribosome" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XET4	RS7_SECCE	No assigned EC number	0.7643	1.0	0.9947	N/A	no
Q9M885	RS72_ARATH	No assigned EC number	0.7905	1.0	1.0	no	no
Q9ZNS1	RS7_AVIMR	No assigned EC number	0.8263	0.9947	1.0	N/A	no
Q10101	RS7_SCHPO	No assigned EC number	0.5026	0.9790	0.9589	yes	no
P50894	RS7_TAKRU	No assigned EC number	0.5340	0.9738	0.9587	N/A	no
P62082	RS7_MOUSE	No assigned EC number	0.5340	0.9738	0.9587	yes	no
Q8LD03	RS73_ARATH	No assigned EC number	0.8085	0.9842	0.9894	no	no
Q9VA91	RS7_DROME	No assigned EC number	0.5189	0.9371	0.9226	yes	no
Q8LJU5	RS7_ORYSJ	No assigned EC number	0.7748	1.0	0.9947	yes	no
P62084	RS7_DANRE	No assigned EC number	0.5340	0.9738	0.9587	yes	no
P62085	RS7_DROYA	No assigned EC number	0.5135	0.9371	0.9226	N/A	no
Q5RT64	RS7_FELCA	No assigned EC number	0.5340	0.9738	0.9587	N/A	no
P62083	RS7_RAT	No assigned EC number	0.5340	0.9738	0.9587	yes	no
P62081	RS7_HUMAN	No assigned EC number	0.5340	0.9738	0.9587	yes	no
Q90YR7	RS7_ICTPU	No assigned EC number	0.5445	0.9738	0.9587	N/A	no
Q9C514	RS71_ARATH	No assigned EC number	0.8010	1.0	1.0	yes	no
Q54I41	RS7_DICDI	No assigned EC number	0.5271	0.9424	0.9326	yes	no
A6H769	RS7_BOVIN	No assigned EC number	0.5340	0.9738	0.9587	yes	no
Q23312	RS7_CAEEL	No assigned EC number	0.5113	0.8848	0.8711	yes	no
P48164	RS7B_YEAST	No assigned EC number	0.5079	0.9633	0.9684	yes	no
Q962S0	RS7_SPOFR	No assigned EC number	0.5243	0.9371	0.9421	N/A	no
P33514	RS7_ANOGA	No assigned EC number	0.5189	0.9371	0.9322	yes	no
Q9NB21	RS7_CULQU	No assigned EC number	0.5189	0.9371	0.9322	N/A	no
Q9XH45	RS7_BRAOL	No assigned EC number	0.7894	0.9947	0.9947	N/A	no
P48155	RS7_MANSE	No assigned EC number	0.5135	0.9371	0.9421	N/A	no
Q949H0	RS7_HORVU	No assigned EC number	0.7486	0.9947	0.9947	N/A	no
P02362	RS7_XENLA	No assigned EC number	0.5287	0.9738	0.9587	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	191
pfam01251	189	pfam01251, Ribosomal_S7e, Ribosomal protein S7e	1e-105
PTZ00389	184	PTZ00389, PTZ00389, 40S ribosomal protein S7; Prov	3e-72

>gnl|CDD|216389 pfam01251, Ribosomal_S7e, Ribosomal protein S7e

 Score =  299 bits (767), Expect = e-105
 Identities = 121/189 (64%), Positives = 152/189 (80%), Gaps = 3/189 (1%)

Query: 6   KKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHI 65
            KI K K ++P+E E SVAQA+FDLE+ + +LK+EL+DL I SA +I+V G +KAVVI +
Sbjct: 1   NKIIKPKGSKPSELELSVAQALFDLESNSPDLKAELRDLQITSAKEIEVGGGKKAVVIFV 60

Query: 66  PYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQ---RPRSRTLTSV 122
           P    KAYRKI  +LVRELEKKFSGK V+ +A RRIL  PK+ S  Q   RPRSRTLT+V
Sbjct: 61  PVPQLKAYRKIQQRLVRELEKKFSGKHVVFVAQRRILPKPKRKSRYQKQKRPRSRTLTAV 120

Query: 123 HEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDV 182
           H+A+LED+V PAEIVGKRIRYRLDGSK++KVFLD K++ N E+KLD+F+AVY+KL+GKDV
Sbjct: 121 HDAILEDLVYPAEIVGKRIRYRLDGSKLIKVFLDSKDQTNVEHKLDSFSAVYKKLTGKDV 180

Query: 183 VFDFPVTEA 191
           VF+FP T A
Sbjct: 181 VFEFPETNA 189

Length = 189

>gnl|CDD|185592 PTZ00389, PTZ00389, 40S ribosomal protein S7; Provisional

 Score =  215 bits (551), Expect = 3e-72
 Identities = 103/184 (55%), Positives = 143/184 (77%), Gaps = 3/184 (1%)

Query: 8   IHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGN-RKAVVIHIP 66
           I K K AEP+E E+ VA+A+F+LE ++++LK++LK+L I+S  ++ V  + +KAVV+ +P
Sbjct: 1   IKKLKKAEPSELEKQVAKALFELEASSKDLKADLKNLKISSVKEVTVGKDKKKAVVVFVP 60

Query: 67  YRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQ-RPRSRTLTSVHEA 125
           YR+   YRKI  KL+ ELEKK   K V+++A R IL+ P K   ++ RPRSRTLT+VHEA
Sbjct: 61  YRMLMIYRKIQRKLIPELEKKL-KKHVVIVAQRTILKKPVKNYKLKTRPRSRTLTAVHEA 119

Query: 126 MLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFD 185
           +LED+V P+EIVGKR R R+DGSK++KVFLDPK+R N E KLD F+AVY+KL+G+DVVF+
Sbjct: 120 ILEDLVYPSEIVGKRTRVRVDGSKLLKVFLDPKDRKNVEEKLDAFSAVYKKLTGRDVVFE 179

Query: 186 FPVT 189
           FP  
Sbjct: 180 FPWD 183

Length = 184

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	191
PF01251	189	Ribosomal_S7e: Ribosomal protein S7e; InterPro: IP	100.0
KOG3320	192	consensus 40S ribosomal protein S7 [Translation, r	100.0
PTZ00389	184	40S ribosomal protein S7; Provisional	100.0
PRK06418	166	transcription elongation factor NusA-like protein;	99.79
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	82.81

>PF01251 Ribosomal_S7e: Ribosomal protein S7e; InterPro: IPR000554 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.5e-98  Score=629.28  Aligned_cols=185  Identities=62%  Similarity=0.955  Sum_probs=154.4

Q ss_pred             cccccCCCCCCCHHHHHHHHHhHhhhcCCHHHHhcccceeeeeeEEEEeCCCeeEEEEEecchhHHHHHHHHHHHHHHHH
Q 029605            6 KKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELE   85 (191)
Q Consensus         6 ~Ki~K~~g~~p~e~E~~vaqal~dLE~~n~dLK~~Lr~L~i~~akeiev~~~kKAivIfVP~~~lk~f~Kiq~rLv~ELE   85 (191)
                      .||+||+|++|||||.+|||||+|||++++|||++|++|+|++|||||||+|+||||||||||||++|||||.|||+|||
T Consensus         1 ~Ki~K~~~~~p~e~E~~Vaqal~dle~~~~dLK~~Lr~L~i~~aKEi~v~~~kKAivIfVP~~~lk~f~KIq~rLv~ELE   80 (189)
T PF01251_consen    1 KKIVKPKGKKPDEFEESVAQALLDLEMNSSDLKAQLRELYITSAKEIEVGGGKKAIVIFVPVPQLKAFQKIQVRLVRELE   80 (189)
T ss_dssp             ---SS---SS--CHHHHHHHHHHHHCHCHCHHCCCCCC--ECEEEEEEECTCEEEEEEEE-CCCCHHHHHHCHHHHHHHH
T ss_pred             CCccccCCCCCCHHHHHHHHHHHHHHcCcHHHHhhccccEEEEEEEEEECCCcEEEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999766699999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCeEEEEeeeeecCCCCCC----CccccCCCcchhhHhHhhhhcccccceeeceeEEEeecCceEEEEEeCccccc
Q 029605           86 KKFSGKDVILIATRRILRPPKKG----SAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERN  161 (191)
Q Consensus        86 KKfsgk~Vv~iaqRrIlpkp~rk----~~qkRPRSRTLTaVhdaILeDLV~PsEIVGKRir~~lDGskliKV~LD~k~~~  161 (191)
                      |||||+||+|||||||||||+++    .+|+|||||||||||||||||||||+|||||||||++|||+++|||||++|||
T Consensus        81 KKfsgk~Vv~iAqRrIl~kp~r~~~~~~~qkrPRSRTLTaVhdaILeDLV~PseIVGKRir~rlDGskl~KV~LD~k~~~  160 (189)
T PF01251_consen   81 KKFSGKHVVFIAQRRILPKPTRKSRQKQKQKRPRSRTLTAVHDAILEDLVYPSEIVGKRIRVRLDGSKLIKVHLDKKDQN  160 (189)
T ss_dssp             HCTTTCEEEEEE------SS-SSS---TTS---CCCSHHHHHHHHHHHHTTTS-ECEEEEEE-TTS-EEEEEEEECCCCH
T ss_pred             hhcCCCeEEEeccceEcCCCCcCccccccccCcCCcchHHHHHHHHHhhccHHHhheeeEEEecCCCEEEEEEEChHHcc
Confidence            99999999999999999999887    47999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhHHHHHhhhhCCceEEECCCCC
Q 029605          162 NTEYKLDTFAAVYRKLSGKDVVFDFPVTE  190 (191)
Q Consensus       162 ~ve~Kl~tfs~VYkkLTgKdv~FeFp~~~  190 (191)
                      ++|||+|||++|||+||||||+||||+++
T Consensus       161 ~ve~Kl~tfs~VYkkLTgK~v~FeFp~~~  189 (189)
T PF01251_consen  161 NVEHKLDTFSAVYKKLTGKDVVFEFPEQE  189 (189)
T ss_dssp             HHHCCHHHHHHHHHHHCS-EEEEEEE---
T ss_pred             cHHHHHHHHHHHHHHHcCCceEEEcCCCC
Confidence            99999999999999999999999999864

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities []. One of these families consists of Xenopus S8, and mammalian, insect and yeast S7. These proteins have about 200 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_3 2XZM_3 3U5G_H 3U5C_H.

>KOG3320 consensus 40S ribosomal protein S7 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.8e-95  Score=605.19  Aligned_cols=190  Identities=61%  Similarity=0.925  Sum_probs=187.5

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHhHhhhcCCHHHHhcccceeeeeeEEEEeCCCeeEEEEEecchhHHHHHHHHHHH
Q 029605            1 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKL   80 (191)
Q Consensus         1 m~~~~~Ki~K~~g~~p~e~E~~vaqal~dLE~~n~dLK~~Lr~L~i~~akeiev~~~kKAivIfVP~~~lk~f~Kiq~rL   80 (191)
                      ||++.+||+|++|+.|||||.+|||||+|||++|+|||++|++|||++|+|||||||+||||||||+|+|++|||||.||
T Consensus         1 m~s~~~Ki~k~~~~~ptE~E~~iaqal~~le~~n~~lk~~lr~L~I~~a~eiev~Gg~Kaivi~VP~p~lk~fqki~~~L   80 (192)
T KOG3320|consen    1 MFSSQAKIHKPSGSKPTEFEMQIAQALLDLEMDNSDLKAQLRELNITSAKEIEVGGGRKAIVIFVPVPQLKAFQKIQVRL   80 (192)
T ss_pred             CccccccccCCCCCCchHHHHHHHHHHHHHHhcchhhHHHhhhheeeeeEEEEecCCcEEEEEEechHHHHHHHHHHHHH
Confidence            89999999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCeEEEEeeeeecCCCCCCCc-cccCCCcchhhHhHhhhhcccccceeeceeEEEeecCceEEEEEeCccc
Q 029605           81 VRELEKKFSGKDVILIATRRILRPPKKGSA-VQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKE  159 (191)
Q Consensus        81 v~ELEKKfsgk~Vv~iaqRrIlpkp~rk~~-qkRPRSRTLTaVhdaILeDLV~PsEIVGKRir~~lDGskliKV~LD~k~  159 (191)
                      ||||||||||+||+|||+|||||+|++++. |||||||||||||||||||+|||+|||||||||++||++++|||||++|
T Consensus        81 vreleKKF~gk~Vifia~Rrilpkp~rks~~qKRprsrtltaVhdaiLed~vfP~eIvGkR~rv~ldg~ki~kV~LD~~~  160 (192)
T KOG3320|consen   81 VRELEKKFSGKHVIFIAQRRILPKPTRKSRTQKRPRSRTLTAVHDAILEDLVFPAEIVGKRTRVKLDGSKLVKVHLDKKQ  160 (192)
T ss_pred             HHHHHHhcCCceEEEEEeeeeccCCCCCcccccCCccchHHHHHHHHHHhccchhhhcceeEEEEecCcEEEEEEechhh
Confidence            999999999999999999999999999997 8999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhhhHHHHHhhhhCCceEEECCCCC
Q 029605          160 RNNTEYKLDTFAAVYRKLSGKDVVFDFPVTE  190 (191)
Q Consensus       160 ~~~ve~Kl~tfs~VYkkLTgKdv~FeFp~~~  190 (191)
                      +||+|||+|+|++||++||||||+||||+.+
T Consensus       161 ~n~~e~K~e~f~~vy~kLtGKdv~fEfp~~~  191 (192)
T KOG3320|consen  161 QNNVEHKVETFSAVYKKLTGKDVVFEFPEFT  191 (192)
T ss_pred             ccchHHhHHHHHHHHHHhcCCceEEecCccc
Confidence            9999999999999999999999999999864

>PTZ00389 40S ribosomal protein S7; Provisional

Probab=100.00  E-value=4.2e-91  Score=582.55  Aligned_cols=182  Identities=57%  Similarity=0.915  Sum_probs=177.9

Q ss_pred             cccCCCCCCCHHHHHHHHHhHhhhcCCHHHHhcccceeeeeeEEEEeCCC-eeEEEEEecchhHHHHHHHHHHHHHHHHh
Q 029605            8 IHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGN-RKAVVIHIPYRLRKAYRKIHTKLVRELEK   86 (191)
Q Consensus         8 i~K~~g~~p~e~E~~vaqal~dLE~~n~dLK~~Lr~L~i~~akeiev~~~-kKAivIfVP~~~lk~f~Kiq~rLv~ELEK   86 (191)
                      +.|++|++|||||.+|||||+|||++|+|||++|++|+|++||||||++| |||||||||||||++|||||.|||+||||
T Consensus         1 ~~k~~~~~p~e~E~~vaqal~~le~~~~dlK~~L~~L~i~~akei~v~~~~kkaivIfVP~~~lk~~~kiq~rLv~ELEK   80 (184)
T PTZ00389          1 IKKLKKAEPSELEKQVAKALFELEASSKDLKADLKNLKISSVKEVTVGKDKKKAVVVFVPYRMLMIYRKIQRKLIPELEK   80 (184)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCcHHHHhhhhccEEeeEEEEEecCCCcEEEEEEecHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999877 99999999999999999999999999999


Q ss_pred             hcCCCeEEEEeeeeecCCCCCCCc-cccCCCcchhhHhHhhhhcccccceeeceeEEEeecCceEEEEEeCcccccchhh
Q 029605           87 KFSGKDVILIATRRILRPPKKGSA-VQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEY  165 (191)
Q Consensus        87 Kfsgk~Vv~iaqRrIlpkp~rk~~-qkRPRSRTLTaVhdaILeDLV~PsEIVGKRir~~lDGskliKV~LD~k~~~~ve~  165 (191)
                      || |+||+|||||||||+|+++++ |+|||||||||||||||||||||+|||||||||++|||+++|||||++|++++||
T Consensus        81 K~-g~~Vv~ia~RrIl~kp~r~~~~q~rPrSRTLTaVhdaiLeDLvyPaeIvGkRir~~~DGsk~~KV~Ld~~d~~~ve~  159 (184)
T PTZ00389         81 KL-KKHVVIVAQRTILKKPVKNYKLKTRPRSRTLTAVHEAILEDLVYPSEIVGKRTRVRVDGSKLLKVFLDPKDRKNVEE  159 (184)
T ss_pred             Hh-CCeEEEEEEEEEcCCCCcCccccCCCCccchHHHHHHHHHHhccchheeeeEEEEecCCcEEEEEEeCHHHhcccch
Confidence            99 999999999999999999986 9999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHhhhhCCceEEECCCCC
Q 029605          166 KLDTFAAVYRKLSGKDVVFDFPVTE  190 (191)
Q Consensus       166 Kl~tfs~VYkkLTgKdv~FeFp~~~  190 (191)
                      |+|+|++||++|||+||+||||+++
T Consensus       160 Kletf~~VykkLTgkdV~fefp~~~  184 (184)
T PTZ00389        160 KLDAFSAVYKKLTGRDVVFEFPWDP  184 (184)
T ss_pred             hHHHHHHHHHHHhCCCeEEEecCCC
Confidence            9999999999999999999999864

>PRK06418 transcription elongation factor NusA-like protein; Validated

Probab=99.79  E-value=3.8e-19  Score=147.28  Aligned_cols=138  Identities=22%  Similarity=0.389  Sum_probs=107.1

Q ss_pred             CCCHHHHHHHHHhHhhhcCCHHHHhcccceeeeeeEEEEeCCCeeEEEEEe-cchhHHHHHHHHHHHHHHHHhhcCCCeE
Q 029605           15 EPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHI-PYRLRKAYRKIHTKLVRELEKKFSGKDV   93 (191)
Q Consensus        15 ~p~e~E~~vaqal~dLE~~n~dLK~~Lr~L~i~~akeiev~~~kKAivIfV-P~~~lk~f~Kiq~rLv~ELEKKfsgk~V   93 (191)
                      .-+++|-.|+.+|++||.+     ..|++..+-.|  +++++ +  ||+.| +=. =.+..| -...++.|++++ ||+|
T Consensus        27 ~v~~~dv~i~~~l~~l~~~-----~~l~~~~~~k~--~~~dd-r--vIfvV~~gd-g~aIGk-~G~~ik~l~~~l-gk~V   93 (166)
T PRK06418         27 EVTELDVEVSKVLLKLEED-----KELKDVEYKKA--YEVDD-L--VILLVTSGP-RIPIGK-GGKIAKALSRKL-GKKV   93 (166)
T ss_pred             ceEEeehHHHHHHHHhhcc-----ccccCceEEEE--EEeCC-E--EEEEEeCCC-cccccc-cchHHHHHHHHh-CCcE
Confidence            4688999999999999833     34555555444  45543 2  33333 222 222222 357888899999 9998


Q ss_pred             EEEeeeeecCCCCCCCccccCCCcchhhHhHhhhhcccccceeeceeEEEeecCceEEEEEeCcccccchhhhhhhHHHH
Q 029605           94 ILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAV  173 (191)
Q Consensus        94 v~iaqRrIlpkp~rk~~qkRPRSRTLTaVhdaILeDLV~PsEIVGKRir~~lDGskliKV~LD~k~~~~ve~Kl~tfs~V  173 (191)
                      =+|-                 .|-+    -+.+|+||+||++|+|+|++++.||+..+||++|++|++++++|+++|++|
T Consensus        94 evVE-----------------~s~d----~~~fl~Nl~~PA~V~gV~i~~~~dG~~~~kV~Vd~~Dk~~l~~k~e~~~~v  152 (166)
T PRK06418         94 RVVE-----------------KTND----IKKLAVQLLSPARVLGVNTVWLPDGTVQYVIRVSRRDRRRLPAKPELLESI  152 (166)
T ss_pred             EEEE-----------------cCCC----HHHHHHhcCCCcEEEEEEEEEeCCCcEEEEEEECHHHhhcccccHHHHHHH
Confidence            8874                 1222    467899999999999999999999999999999999999999999999999


Q ss_pred             HhhhhCCceEEEC
Q 029605          174 YRKLSGKDVVFDF  186 (191)
Q Consensus       174 YkkLTgKdv~FeF  186 (191)
                      |++|||++|.|+|
T Consensus       153 ~~kltgk~v~~~f  165 (166)
T PRK06418        153 LSKITGTEVKIRV  165 (166)
T ss_pred             HHHHHCCcEEEEe
Confidence            9999999999998

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=82.81  E-value=7.5  Score=33.57  Aligned_cols=93  Identities=22%  Similarity=0.290  Sum_probs=60.7

Q ss_pred             hhHHHHHHHHHHHH---HHHHhhcCCCeEEEEeeeeecCCCCCCCccccCCCcchhhHhHhhhhcccccceeeceeEEEe
Q 029605           68 RLRKAYRKIHTKLV---RELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYR  144 (191)
Q Consensus        68 ~~lk~f~Kiq~rLv---~ELEKKfsgk~Vv~iaqRrIlpkp~rk~~qkRPRSRTLTaVhdaILeDLV~PsEIVGKRir~~  144 (191)
                      +.+..|.+.+.+++   ..|- - .|++|+|+|.+..-..+ -  .--.+.+|=....++.+.+-+.--+++|| |+.+.
T Consensus       110 ~~~~~yg~~~~~fl~~l~~L~-~-~g~nII~tAhe~~~~~~-d--e~G~~~~r~~P~i~~K~~n~l~G~~DvV~-rl~i~  183 (220)
T TIGR01618       110 PELQHYQKLDLWFLDLLTVLK-E-SNKNIYATAWELTNQSS-G--ESGQIYNRYQPDIREKVLNAFLGLTDVVG-RIVLN  183 (220)
T ss_pred             cccccHHHHHHHHHHHHHHHH-h-CCCcEEEEEeecccccc-C--CCCCCcceechhhhhhHHHhhcccccEEE-EEEEc
Confidence            35678888876655   4552 2 59999999998642111 0  11224455566677888888999999999 66655


Q ss_pred             e-cCceEEEEEeCcccccchhhhhh
Q 029605          145 L-DGSKIMKVFLDPKERNNTEYKLD  168 (191)
Q Consensus       145 l-DGskliKV~LD~k~~~~ve~Kl~  168 (191)
                      - +|.|.+  .+++.+.....++||
T Consensus       184 ~~~g~R~~--~~~~~~~~~AKNrld  206 (220)
T TIGR01618       184 GETGERGF--ILDPSKGNYAKNRLD  206 (220)
T ss_pred             cCCCceEE--EECCCCCcccccccc
Confidence            4 577665  567766666666655

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	191
3u5c_H	190	The Structure Of The Eukaryotic Ribosome At 3.0 A R		1e-45
3zey_4	202	High-resolution Cryo-electron Microscopy Structure		2e-33
2xzm_3	197	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-21

>pdb|3U5C|H Chain H, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 190

Iteration: 1
 Score =  179 bits (453), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/174 (52%), Positives = 120/174 (68%), Gaps = 2/174 (1%)
Query: 16  PTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRK 75
           PTE E  VAQA  +LEN++ ELK+EL+ L   S  +IDV G +KA+ I +P      + K
Sbjct: 13  PTELELQVAQAFVELENSSPELKAELRPLQFKSIREIDVAGGKKALAIFVPVPSLAGFHK 72
Query: 76  IHTKLVRELEKKFSGKDVILIATRRILRPPKKGS--AVQRPRSRTLTSVHEAMLEDVVLP 133
           + TKL RELEKKF  + VI +A RRIL  P + S    +RPRSRTLT+VH+ +LED+V P
Sbjct: 73  VQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFP 132
Query: 134 AEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFP 187
            EIVGKR+RY + G+KI KV LD K+    +YKL++F AVY KL+GK +VF+ P
Sbjct: 133 TEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIP 186

>pdb|3ZEY|4 Chain 4, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 202

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/190 (41%), Positives = 118/190 (62%), Gaps = 5/190 (2%)
Query: 2   FSAQ---KKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNR 58
            SAQ   +K+ K K A P++ EESVA+ +F+LE +++ L+++L   +IN+      P ++
Sbjct: 1   MSAQPHLRKLRKLKRANPSQEEESVARVLFELEGSHKTLRAQLPRFHINTVRTSSSPRHK 60
Query: 59  K-AVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQR-PRS 116
           K A++I  P R     RKI   L  ELEK+F G  V+L+A R+I + P     +Q+  RS
Sbjct: 61  KTAMIILYPLRFIMLVRKIQRTLTAELEKRFPGNIVVLVAQRKITKRPNDVYKLQQVQRS 120
Query: 117 RTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRK 176
           RT  +V E +L D++ P ++VG+R RYR DGSK+MKVFLD ++R   E +L   A VY+ 
Sbjct: 121 RTSVAVFENILNDLIYPCDVVGRRWRYRTDGSKLMKVFLDARDRKRVESRLPLLAHVYKL 180
Query: 177 LSGKDVVFDF 186
           L+ + V F F
Sbjct: 181 LTHRTVTFGF 190

>pdb|2XZM|3 Chain 3, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 197

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 111/188 (59%), Gaps = 8/188 (4%)
Query: 4   AQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRK---- 59
           A  K HK +    T+ EE V  A+ +L+NT+ +LK+ L+ + +    +  +    K    
Sbjct: 2   ALAKFHKKQSL--TKIEEQVGSALVELQNTHPDLKTSLESIILTQVKEFQINKTNKKAKS 59
Query: 60  AVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRI-LRPPKKGSAVQRPRSRT 118
           AV+I++ ++  +       KL+ ELEKK   + V   A R+I  +  K+  + QRPRSR 
Sbjct: 60  AVLIYVHFQSYRVLLSAARKLIIELEKKLK-QIVFFTAQRKIESKWVKEHKSQQRPRSRC 118
Query: 119 LTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLS 178
           LT V++A+L+D++LP+ ++GKRIR RLDG+   ++ LD  +R+  E KLD    +Y+ ++
Sbjct: 119 LTYVYDALLDDLLLPSTLIGKRIRARLDGTSFYRIQLDQNDRDFLEEKLDAITHIYKTVT 178
Query: 179 GKDVVFDF 186
            ++V F+F
Sbjct: 179 TREVTFEF 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	191
3u5c_H	190	RP30, RP40, 40S ribosomal protein S7-A; translatio	7e-84
2xzm_3	197	RPS7E, 40S ribosomal protein RPS7E; ribosome, tran	1e-77
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H Length = 190

 Score =  245 bits (626), Expect = 7e-84
 Identities = 95/191 (49%), Positives = 125/191 (65%), Gaps = 5/191 (2%)

Query: 1   MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKA 60
           M + Q KI       PTE E  VAQA  +LEN++ ELK+EL+ L   S  +IDV G +KA
Sbjct: 1   MSAPQAKILSQA---PTELELQVAQAFVELENSSPELKAELRPLQFKSIREIDVAGGKKA 57

Query: 61  VVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS--AVQRPRSRT 118
           + I +P      + K+ TKL RELEKKF  + VI +A RRIL  P + S    +RPRSRT
Sbjct: 58  LAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRT 117

Query: 119 LTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLS 178
           LT+VH+ +LED+V P EIVGKR+RY + G+KI KV LD K+    +YKL++F AVY KL+
Sbjct: 118 LTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLT 177

Query: 179 GKDVVFDFPVT 189
           GK +VF+ P  
Sbjct: 178 GKQIVFEIPSE 188

>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_3 Length = 197

 Score =  229 bits (586), Expect = 1e-77
 Identities = 65/192 (33%), Positives = 112/192 (58%), Gaps = 8/192 (4%)

Query: 4   AQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRK---- 59
           A  K HK +    T+ EE V  A+ +L+NT+ +LK+ L+ + +    +  +    K    
Sbjct: 2   ALAKFHKKQ--SLTKIEEQVGSALVELQNTHPDLKTSLESIILTQVKEFQINKTNKKAKS 59

Query: 60  AVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL-RPPKKGSAVQRPRSRT 118
           AV+I++ ++  +       KL+ ELEKK   + V   A R+I  +  K+  + QRPRSR 
Sbjct: 60  AVLIYVHFQSYRVLLSAARKLIIELEKKLK-QIVFFTAQRKIESKWVKEHKSQQRPRSRC 118

Query: 119 LTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLS 178
           LT V++A+L+D++LP+ ++GKRIR RLDG+   ++ LD  +R+  E KLD    +Y+ ++
Sbjct: 119 LTYVYDALLDDLLLPSTLIGKRIRARLDGTSFYRIQLDQNDRDFLEEKLDAITHIYKTVT 178

Query: 179 GKDVVFDFPVTE 190
            ++V F+F   +
Sbjct: 179 TREVTFEFKEDK 190

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 40/212 (18%), Positives = 67/212 (31%), Gaps = 66/212 (31%)

Query: 32  NTNQELKSELKDLYI----NSAMQIDVPGNRKAVVIHIPYRLRKAYR-KIHTK--LV--- 81
           N+ + +   L+ L      N   + D   N K  +  I   LR+  + K +    LV   
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 82  ---RELEKKFSGKDVILIATR-----RILRPPKKGSAVQRPRSRTLTSVH-EAMLEDVV- 131
               +    F+    IL+ TR       L             S TLT    +++L   + 
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 132 -----LPAE----------IVGKRIR---YRLDG---------SKIMKVF---LDPKERN 161
                LP E          I+ + IR      D          + I++     L+P    
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP---- 368

Query: 162 NTEYKLDTFAAVYRKLSGKDVVF--DFPVTEA 191
             EY+      ++ +LS    VF     +   
Sbjct: 369 -AEYR-----KMFDRLS----VFPPSAHIPTI 390

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	191
3u5c_H	190	RP30, RP40, 40S ribosomal protein S7-A; translatio	100.0
2xzm_3	197	RPS7E, 40S ribosomal protein RPS7E; ribosome, tran	100.0

>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H

Probab=100.00  E-value=3.4e-100  Score=637.95  Aligned_cols=187  Identities=51%  Similarity=0.813  Sum_probs=178.9

Q ss_pred             CCccccccccCCCCCCCHHHHHHHHHhHhhhcCCHHHHhcccceeeeeeEEEEeCCCeeEEEEEecchhHHHHHHHHHHH
Q 029605            1 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKL   80 (191)
Q Consensus         1 m~~~~~Ki~K~~g~~p~e~E~~vaqal~dLE~~n~dLK~~Lr~L~i~~akeiev~~~kKAivIfVP~~~lk~f~Kiq~rL   80 (191)
                      |++.++||+||+   |||||++|||||+|||++|+|||++|++|||++|||||||||+||||||||||||++|||||+||
T Consensus         1 m~~~~~KI~k~~---p~e~E~~vaqal~dLE~~~~dLK~~Lr~L~i~~akEiev~~~kKAivIfVP~p~lk~f~KIq~rL   77 (190)
T 3u5c_H            1 MSAPQAKILSQA---PTELELQVAQAFVELENSSPELKAELRPLQFKSIREIDVAGGKKALAIFVPVPSLAGFHKVQTKL   77 (190)
T ss_dssp             ---CCSSTTCSS---CCSHHHHHHHHHHHHHCSHHHHTTSSSSCCCSCEEEEECTTSCEEEEEEECSSSHHHHHHHTHHH
T ss_pred             CCccccccCCCC---CCHHHHHHHHHHHHHhhCcHHHHHhhhcceeeeEEEEEecCCcEEEEEEecHHHHHHHHHHHHHH
Confidence            565578999997   99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCeEEEEeeeeecCCCCCCC--ccccCCCcchhhHhHhhhhcccccceeeceeEEEeecCceEEEEEeCcc
Q 029605           81 VRELEKKFSGKDVILIATRRILRPPKKGS--AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPK  158 (191)
Q Consensus        81 v~ELEKKfsgk~Vv~iaqRrIlpkp~rk~--~qkRPRSRTLTaVhdaILeDLV~PsEIVGKRir~~lDGskliKV~LD~k  158 (191)
                      |+||||||||+||+|||||||||||++++  +|+|||||||||||||||||||||+|||||||||++|||+++|||||++
T Consensus        78 vrELEKKfsgkhVvfiAqRrIlpkp~r~~~~kqkRPRSRTLTaVhdaiLeDLv~P~eIVGKRir~rlDGskl~KV~LD~~  157 (190)
T 3u5c_H           78 TRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSK  157 (190)
T ss_dssp             HHHHHHTTCSEEEEEEECCCCCCCCCSSSCCCSCCCGGGSHHHHHHHHHHHHSCSSCEEEEEEEECSSSCEEEEEEECSS
T ss_pred             HHHHHhccCCCEEEEEecceEcCCCccCCcccccCCCCCchhHHHHHHHhhcccchheeeeEEEEecCCCEEEEEEECHH
Confidence            99999999999999999999999998886  4999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhhhhhHHHHHhhhhCCceEEECCCCC
Q 029605          159 ERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTE  190 (191)
Q Consensus       159 ~~~~ve~Kl~tfs~VYkkLTgKdv~FeFp~~~  190 (191)
                      ||||+|||+|||++|||+||||||+||||+++
T Consensus       158 ~~~~ve~Kl~tfs~VYkkLTgkdv~FeFp~~~  189 (190)
T 3u5c_H          158 DVQQIDYKLESFQAVYNKLTGKQIVFEIPSET  189 (190)
T ss_dssp             STHHHHTTHHHHHHHHHHHHSCEEEEECCC--
T ss_pred             HhcccchhhHHHHHHHHHhhCCcEEEEecCcc
Confidence            99999999999999999999999999999864

>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_3

Probab=100.00  E-value=7.6e-86  Score=554.55  Aligned_cols=185  Identities=35%  Similarity=0.572  Sum_probs=177.2

Q ss_pred             ccccccccCCCCCCCHHHHHHHHHhHhhhcCCHHHHhcccceeeeeeEEEEeC-CC---eeEEEEEecchhHHHHHHHHH
Q 029605            3 SAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVP-GN---RKAVVIHIPYRLRKAYRKIHT   78 (191)
Q Consensus         3 ~~~~Ki~K~~g~~p~e~E~~vaqal~dLE~~n~dLK~~Lr~L~i~~akeiev~-~~---kKAivIfVP~~~lk~f~Kiq~   78 (191)
                      ||++||+||  .+|||||.+|||||+|||++++|||++|++|+|++||||||| ||   +||||||||+|++++|||||.
T Consensus         1 ~a~~ki~k~--~~p~e~E~~VaqaL~dLE~~~~dLK~~l~~l~i~~aKeiev~~~~~k~kkaivIfVP~~~lk~f~kiq~   78 (197)
T 2xzm_3            1 MALAKFHKK--QSLTKIEEQVGSALVELQNTHPDLKTSLESIILTQVKEFQINKTNKKAKSAVLIYVHFQSYRVLLSAAR   78 (197)
T ss_dssp             -CCTTCSSC--SCCCHHHHHHHHHHHHHHHHCSHHHHHHHHCCEEEEEEEEEECTTCCEEEEEEEEECGGGHHHHHHHHH
T ss_pred             CCcccccCC--CCCCHHHHHHHHHHHHHHhcCHHHHHhhhhcceEEEEEEEecCCCCccceEEEEEEccchhhHHHHHHH
Confidence            367899999  799999999999999999877799999999999999999997 66   779999999999999999999


Q ss_pred             HHHHHHHhhcCCCeEEEEeeeeecCCCCCC-CccccCCCcchhhHhHhhhhcccccceeeceeEEEeecCceEEEEEeCc
Q 029605           79 KLVRELEKKFSGKDVILIATRRILRPPKKG-SAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDP  157 (191)
Q Consensus        79 rLv~ELEKKfsgk~Vv~iaqRrIlpkp~rk-~~qkRPRSRTLTaVhdaILeDLV~PsEIVGKRir~~lDGskliKV~LD~  157 (191)
                      ||++|||||| |+||+|||||||||+|+++ .+|+|||||||||||||||||||||+|||||||||++|||+++|||||+
T Consensus        79 rLvrELEKKf-g~~Vv~ia~RrIl~kp~~~~~~q~rprsrTltaV~~aiLeDLv~PaeIvGkRir~~~DGs~~~KV~Ld~  157 (197)
T 2xzm_3           79 KLIIELEKKL-KQIVFFTAQRKIESKWVKEHKSQQRPRSRCLTYVYDALLDDLLLPSTLIGKRIRARLDGTSFYRIQLDQ  157 (197)
T ss_dssp             HHHHHHHHTT-SSEEEEEECCCCCCSSCCCCTTCCCCGGGSHHHHHHHHHHHHSTTSCCSEEEEEECSSSCEECCEEEES
T ss_pred             HHHHHHHHHh-CCcEEEEecccccCCCcccCccccCCCccchhhhHHHHHHHhccchheeeeEEEEecCCCEEEEEEeCH
Confidence            9999999999 8999999999999999875 4799999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhhHHHHHhhhhCCceEEECCCCC
Q 029605          158 KERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTE  190 (191)
Q Consensus       158 k~~~~ve~Kl~tfs~VYkkLTgKdv~FeFp~~~  190 (191)
                      +||+++|||+|||++||++|||+||+||||+..
T Consensus       158 ~d~~~ve~Kletf~~VykkLTGkdV~feFp~~~  190 (197)
T 2xzm_3          158 NDRDFLEEKLDAITHIYKTVTTREVTFEFKEDK  190 (197)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHSCCBCCEEEECCC
T ss_pred             HHhcccccchHHHHHHHHHHhCCCEEEEEcCcc
Confidence            999999999999999999999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00