Citrus Sinensis ID: 029607

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEVTSWFYELCYVIVSNLSQLLLHL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHcHHEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHEEEEHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccEEEEc
Coil and Loop (DISEMBL)
MNYLNWDINAKLGLSAAASVRVSNelgaahprvAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIidlpiayvrgFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEVTSWFYELCYVIVSNLSQLLLHL
Flexible Loop (DISEMBL)
MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEVTSWFYELCYVIVSNLSQLLLHL
Low Complexity Region (SEG)
MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKfsvfvvnansvfisvvfsaivLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEVTSWFYELCYVIVSNLSQLLLHL
Disordered region (IsUnstruct)
**YLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEVTSWFYELCYVIVSNLSQLLL**
Disordered Region (DISOPRED)
MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEVTSWFYE***************L
Disordered Region (DISEMBL)
MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEVTSWFYELCYVIVSNLSQLLLHL
Disordered Region (DISPRO)
MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEVTSWFYELCYVIVSNLSQLLL**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEVTSWFYELCYVIVSNLSQLLLHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
Q9LYT3	507	Protein TRANSPARENT TESTA	yes	no	0.884	0.331	0.702	3e-61
Q8RWF5	483	MATE efflux family protei	no	no	0.805	0.316	0.378	2e-24
Q9SIA3	476	MATE efflux family protei	no	no	0.815	0.325	0.387	5e-23
Q9SIA5	476	MATE efflux family protei	no	no	0.815	0.325	0.380	9e-23
Q8GXM8	476	MATE efflux family protei	no	no	0.815	0.325	0.367	2e-22
Q9SIA4	476	MATE efflux family protei	no	no	0.815	0.325	0.380	3e-22
Q9SIA1	477	MATE efflux family protei	no	no	0.805	0.320	0.347	2e-21
Q9LUH2	477	MATE efflux family protei	no	no	0.805	0.320	0.385	9e-21
Q9LUH3	469	MATE efflux family protei	no	no	0.805	0.326	0.359	1e-19
Q5RFD2	570	Multidrug and toxin extru	yes	no	0.805	0.268	0.333	5e-17

>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

 Score =  234 bits (597), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 118/168 (70%), Positives = 136/168 (80%)

Query: 1   MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFR 60
           M YLNWD+   LGLSAA SVRVSNELGA +PRVA  SV VVN  +V IS V   IVL+FR
Sbjct: 318 MYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVNITTVLISSVLCVIVLVFR 377

Query: 61  ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
             LSK FTS++EV+ AVSDL PLLA+S FLNGIQPILSGVAIGSGWQA+VAYVNL  YY+
Sbjct: 378 VGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLVTYYV 437

Query: 121 IDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEV 168
           I LPI  V GFKT++GV GIWWGMI GV+LQT+TL +LT++TNW +EV
Sbjct: 438 IGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKTNWTSEV 485

May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 95/161 (59%), Gaps = 8/161 (4%)

Query: 11  KLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFI----SVVFSAIVLIFRADLSKL 66
            +G+ AA S+RVSNELGA +P VA+ +VF      +F+    + + S ++ I R      
Sbjct: 307 PMGIGAAGSIRVSNELGAGNPEVARLAVFA----GIFLWFLEATICSTLLFICRDIFGYA 362

Query: 67  FTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIA 126
           F+++ EVV  V++L+PLL IS  ++G   +L GVA GSGWQ I A+ N+  YY++  P+ 
Sbjct: 363 FSNSKEVVDYVTELSPLLCISFLVDGFSAVLGGVARGSGWQHIGAWANVVAYYLLGAPVG 422

Query: 127 YVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAE 167
              GF  ++   G+W G++ G   Q I L I+T   +WN +
Sbjct: 423 LFLGFWCHMNGKGLWIGVVVGSTAQGIILAIVTACMSWNEQ 463

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score =  107 bits (267), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 89/155 (57%)

Query: 13  GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSE 72
           G++AA S RVSN+LGA  P+VA+ SV       +  S  FS ++  FR  +   F+++ E
Sbjct: 306 GVAAAVSTRVSNKLGAGIPQVARVSVLAGLCLWLVESSFFSILLFAFRNIIGYAFSNSKE 365

Query: 73  VVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK 132
           VV  V+DL+PLL +S  L+G   +L+GVA G GWQ I A  N+  YY++  P+     F 
Sbjct: 366 VVDYVADLSPLLCLSFVLDGFTAVLNGVARGCGWQHIGALNNVVAYYLVGAPVGIYLAFS 425

Query: 133 TNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAE 167
             +   G+W G++ G  +Q I L I+T   NW  +
Sbjct: 426 CELNGKGLWCGVVVGSAVQAIILAIVTASMNWKEQ 460

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score =  106 bits (265), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 88/155 (56%)

Query: 13  GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSE 72
           G++AA S RVSN LGA +P+VA+ SV       +  S  FS ++   R  +   F+++ E
Sbjct: 306 GVAAAVSTRVSNNLGAGNPQVARVSVLAGLCLWIVESAFFSILLFTCRNIIGYAFSNSKE 365

Query: 73  VVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK 132
           V+  V+DLTPLL +S  L+G   +L+GVA GSGWQ I A+ N   YY++  P+     F 
Sbjct: 366 VLDYVADLTPLLCLSFILDGFTAVLNGVARGSGWQHIGAWNNTVSYYLVGAPVGIYLAFS 425

Query: 133 TNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAE 167
             +   G+W G++ G  +Q   L I+T   NW  +
Sbjct: 426 RELNGKGLWCGVVVGSTVQATILAIVTASINWKEQ 460

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score =  105 bits (262), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 89/155 (57%)

Query: 13  GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSE 72
           G++AA S RVSN+LGA +P+VA+ SV       +  S  FS ++   R  +   F+++ E
Sbjct: 306 GVAAAVSTRVSNKLGAGNPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYTFSNSKE 365

Query: 73  VVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK 132
           VV  V+D++PLL +S  L+G+  +L+GVA G GWQ I A +N+  YY++  P+     F 
Sbjct: 366 VVDYVADISPLLCLSFILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFS 425

Query: 133 TNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAE 167
                 G+W G++ G  +Q   L I+T   NW  +
Sbjct: 426 REWNGKGLWCGVMVGSAVQATLLAIVTASMNWKEQ 460

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score =  104 bits (260), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 88/155 (56%)

Query: 13  GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSE 72
           G++AA S RVSN+LGA  P+VA+ SV       +  S  FS ++   R  +   F+++ E
Sbjct: 306 GVAAAVSTRVSNKLGAGIPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYAFSNSKE 365

Query: 73  VVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK 132
           VV  V++LTPLL +S  L+G   +L+GVA GSGWQ I A  N+  YY++  P+     F 
Sbjct: 366 VVDYVANLTPLLCLSFILDGFTAVLNGVARGSGWQHIGALNNVVAYYLVGAPVGVYLAFN 425

Query: 133 TNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAE 167
             +   G+W G++ G  +Q I L  +T   NW  +
Sbjct: 426 RELNGKGLWCGVVVGSAVQAIILAFVTASINWKEQ 460

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 92/161 (57%), Gaps = 8/161 (4%)

Query: 11  KLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFI----SVVFSAIVLIFRADLSKL 66
            +G+ AA S R+SNELGA +P VA+ +VF      +F+    + + S ++   +      
Sbjct: 307 PMGIGAAGSTRISNELGAGNPEVARLAVFA----GIFLWFLEATICSTLLFTCKNIFGYA 362

Query: 67  FTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIA 126
           F+++ EVV  V++L+ LL +S  ++G   +L GVA GSGWQ I A+ N+  YY++  P+ 
Sbjct: 363 FSNSKEVVDYVTELSSLLCLSFMVDGFSSVLDGVARGSGWQNIGAWANVVAYYLLGAPVG 422

Query: 127 YVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAE 167
           +  GF  ++   G+W G+I G   Q I L I+T   +W  +
Sbjct: 423 FFLGFWGHMNGKGLWIGVIVGSTAQGIILAIVTACLSWEEQ 463

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 89/153 (58%)

Query: 13  GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSE 72
           GLSAAAS RVSNELGA + + AK +  V    S+ +++    ++L+       LF+ +  
Sbjct: 318 GLSAAASTRVSNELGAGNVKGAKKATSVSVKLSLVLALGVVIVLLVGHDGWVGLFSDSYV 377

Query: 73  VVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK 132
           + +  + L   LA S  L+ IQ +LSGVA G GWQ +V  +NLA +Y+I +PIA   GFK
Sbjct: 378 IKEEFASLRFFLAASITLDSIQGVLSGVARGCGWQRLVTVINLATFYLIGMPIAAFCGFK 437

Query: 133 TNIGVVGIWWGMITGVLLQTITLNILTVRTNWN 165
                 G+W G+I G+  Q+ +L ++T+   W 
Sbjct: 438 LKFYAKGLWIGLICGIFCQSSSLLLMTIFRKWT 470

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 88/153 (57%)

Query: 13  GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSE 72
           GLSAA S RVSNELGA + + AK +  V    S+ +++     +L+       LF+++  
Sbjct: 310 GLSAATSTRVSNELGAGNVKGAKKATSVSVKLSLVLALGVVIAILVGHDAWVGLFSNSHV 369

Query: 73  VVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK 132
           + +  + L   LA S  L+ IQ +LSGVA G GWQ +   +NL  +Y+I +PI+ + GFK
Sbjct: 370 IKEGFASLRFFLAASITLDSIQGVLSGVARGCGWQRLATVINLGTFYLIGMPISVLCGFK 429

Query: 133 TNIGVVGIWWGMITGVLLQTITLNILTVRTNWN 165
             +   G+W G+I G+  Q+ +L ++T+   W 
Sbjct: 430 LKLHAKGLWIGLICGMFCQSASLLLMTIFRKWT 462

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RFD2|S47A1_PONAB Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 80/153 (52%)

Query: 13  GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSE 72
           G S AASVRV N LGA     A+ S  V    +V  +V FS ++L  +  +  +FT++ +
Sbjct: 311 GFSVAASVRVGNALGAGDMEQARKSSTVSLLITVLFAVAFSVLLLSCKDHVGYIFTTDRD 370

Query: 73  VVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK 132
           ++  V+ + P+ A+S     +     GV  GSG Q + A VN   YY++ LPI     F 
Sbjct: 371 IINLVAQVVPIYAVSHLFEALACTSGGVLRGSGNQKVGAIVNTIGYYVVGLPIGIALMFA 430

Query: 133 TNIGVVGIWWGMITGVLLQTITLNILTVRTNWN 165
           T +GV+G+W G+I   + Q +      ++ NW 
Sbjct: 431 TKLGVMGLWSGIIICTVFQAVCFLGFIIQLNWK 463

Solute transporter for tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, N-methylnicotinamide (NMN), metformin, creatinine, guanidine, procainamide, topotecan, estrone sulfate, acyclovir, ganciclovir and also the zwitterionic cephalosporin, cephalexin and cephradin. Seems to also play a role in the uptake of oxaliplatin (a new platinum anticancer agent). Able to transport paraquat (PQ or N,N-dimethyl-4-4'-bipiridinium); a widely used herbicid. Responsible for the secretion of cationic drugs across the brush border membranes.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
442558067	506	TT12a [Gossypium arboreum]	0.884	0.332	0.809	5e-70
308220266	505	TT12-1 MATE transporter [Malus x domesti	0.884	0.332	0.779	3e-69
260401276	504	MATE transporter [Medicago truncatula]	0.894	0.337	0.747	1e-67
308220270	514	TT12-2 MATE transporter [Malus x domesti	0.884	0.326	0.761	2e-67
356553625	505	PREDICTED: protein TRANSPARENT TESTA 12-	0.884	0.332	0.755	2e-66
224085425	505	predicted protein [Populus trichocarpa]	0.884	0.332	0.755	6e-66
224085427	505	predicted protein [Populus trichocarpa]	0.884	0.332	0.75	9e-66
357494057	589	Protein TRANSPARENT TESTA [Medicago trun	0.894	0.288	0.725	1e-65
302143500	431	unnamed protein product [Vitis vinifera]	0.884	0.389	0.797	1e-64
225446757	506	PREDICTED: protein TRANSPARENT TESTA 12-	0.884	0.332	0.797	2e-64

>gi|442558067|gb|AGC55236.1| TT12a [Gossypium arboreum]

 Score =  269 bits (687), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 136/168 (80%), Positives = 145/168 (86%)

Query: 1   MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFR 60
           MNYLNWD+   LGLSAAASVRVSNELGA HPRVAKFSVFVVN  S+ IS+VFSAIVLIFR
Sbjct: 317 MNYLNWDMQFMLGLSAAASVRVSNELGAGHPRVAKFSVFVVNGTSILISIVFSAIVLIFR 376

Query: 61  ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
             LSK FTS+SEV++AVSDLTPLLAIS FLNGIQPILSGVAIGSGWQAIVAYVNLA YYI
Sbjct: 377 VGLSKAFTSDSEVIEAVSDLTPLLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLATYYI 436

Query: 121 IDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEV 168
           I LPI  V GFKT++GV GIWWGMI GVLLQT TL +LT  TNWN EV
Sbjct: 437 IGLPIGCVLGFKTSLGVAGIWWGMIIGVLLQTATLVVLTATTNWNKEV 484

Source: Gossypium arboreum

Species: Gossypium arboreum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308220266|gb|ADO22709.1| TT12-1 MATE transporter [Malus x domestica] gi|308220268|gb|ADO22710.1| TT12-1 MATE transporter [Malus x domestica]

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 131/168 (77%), Positives = 146/168 (86%)

Query: 1   MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFR 60
           MNYLNWD+   LGLSAAASVRVSNELGA HP+VAKFSVFVVN  S+ IS+VFSAI+LIFR
Sbjct: 316 MNYLNWDMQFMLGLSAAASVRVSNELGAGHPKVAKFSVFVVNGTSILISIVFSAIILIFR 375

Query: 61  ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
             LSKLFTS++EV+ AVSDLT LLAIS FLNGIQPILSGVAIGSGWQA+VAYVNL CYYI
Sbjct: 376 VGLSKLFTSDAEVIAAVSDLTSLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLTCYYI 435

Query: 121 IDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEV 168
           I LPI  V GFKT++GV GIWWGMI GV LQT+TL +LT RTNW++EV
Sbjct: 436 IGLPIGCVLGFKTSMGVAGIWWGMIIGVFLQTVTLIVLTARTNWDSEV 483

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|260401276|gb|ACX37118.1| MATE transporter [Medicago truncatula]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/170 (74%), Positives = 143/170 (84%)

Query: 1   MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFR 60
           MNYLNWD+   LGL AAASVR+SNELGAAHPRVAKF++FVVN NS+ ISVV SAI+LIFR
Sbjct: 314 MNYLNWDMQVMLGLGAAASVRISNELGAAHPRVAKFAIFVVNGNSILISVVLSAIILIFR 373

Query: 61  ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
             L  LFTS+SEV++AVSDLTPLLAIS  LNGIQPILSGVAIGSGWQA+VAYVNLACYY+
Sbjct: 374 DGLRNLFTSDSEVIEAVSDLTPLLAISVLLNGIQPILSGVAIGSGWQALVAYVNLACYYV 433

Query: 121 IDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEVTS 170
           I L +  V GFKT++GV GIWWGMI GV +QT+TL ILT RTNW  EV  
Sbjct: 434 IGLTVGCVLGFKTSLGVAGIWWGMILGVFIQTVTLIILTARTNWGVEVEK 483

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308220270|gb|ADO22711.1| TT12-2 MATE transporter [Malus x domestica] gi|308220272|gb|ADO22712.1| TT12-2 MATE transporter [Malus x domestica]

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 128/168 (76%), Positives = 144/168 (85%)

Query: 1   MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFR 60
           MNYLNWD+   LGL+AAASVRVSNELGA H +VAKFSVFVVN  S+ IS++F+AI+LIFR
Sbjct: 316 MNYLNWDMQFMLGLAAAASVRVSNELGAGHAKVAKFSVFVVNGTSILISIIFTAIILIFR 375

Query: 61  ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
             LSKLFTS+ EVV AVS+LTPLLAIS FLNGIQPILSGVAIGSGWQA+VAYVNL CYYI
Sbjct: 376 VALSKLFTSDDEVVTAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAVVAYVNLTCYYI 435

Query: 121 IDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEV 168
           I LPI  V GFKT++GV GIWWG+I GV LQT+TL +LT RTNW AEV
Sbjct: 436 IGLPIGCVLGFKTSMGVAGIWWGLIIGVFLQTVTLIVLTARTNWTAEV 483

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553625|ref|XP_003545155.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max]

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 143/168 (85%)

Query: 1   MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFR 60
           MNYLNWD+   LGLS AASVRVSNELGA+HPRVAKFSVFVVN  S+ ISVVF  I+LIFR
Sbjct: 315 MNYLNWDMQFMLGLSTAASVRVSNELGASHPRVAKFSVFVVNGTSILISVVFCTIILIFR 374

Query: 61  ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
             LSKLFTS+S+V+ AVS+LTPLLAIS F NGIQPILSGVAIGSGWQA+VAYVNLA YY+
Sbjct: 375 VSLSKLFTSDSDVIDAVSNLTPLLAISVFFNGIQPILSGVAIGSGWQALVAYVNLASYYV 434

Query: 121 IDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEV 168
           + L +  V GFKT++GV GIWWGMI GVL+QT+TL ILT RTNW AEV
Sbjct: 435 VGLTVGCVLGFKTSLGVAGIWWGMILGVLIQTVTLIILTARTNWQAEV 482

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085425|ref|XP_002307571.1| predicted protein [Populus trichocarpa] gi|222857020|gb|EEE94567.1| predicted protein [Populus trichocarpa]

 Score =  255 bits (651), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 140/168 (83%)

Query: 1   MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFR 60
           MNYLNWD+   LGLSA+ SVRV NELGA HP+VAK SV VVN  S+ IS++FSAIVLIFR
Sbjct: 316 MNYLNWDMQFMLGLSASTSVRVGNELGAGHPKVAKLSVMVVNGTSIVISIIFSAIVLIFR 375

Query: 61  ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
             LSKLFT++ EV+ AVSDLTPLLAIS FLNGIQPILSGVAIGSGWQA VAYVNLA YY+
Sbjct: 376 VGLSKLFTTDYEVIDAVSDLTPLLAISVFLNGIQPILSGVAIGSGWQATVAYVNLATYYV 435

Query: 121 IDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEV 168
           I LPI  V  FKT++GV GIWWGMI GVLLQTITL ILT RTNW+ EV
Sbjct: 436 IGLPIGCVLAFKTSLGVAGIWWGMIAGVLLQTITLIILTARTNWDTEV 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085427|ref|XP_002307572.1| predicted protein [Populus trichocarpa] gi|222857021|gb|EEE94568.1| predicted protein [Populus trichocarpa]

 Score =  254 bits (650), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 140/168 (83%)

Query: 1   MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFR 60
           MNYLNWD+   LGLSA+ SVRV NELGA HP+VAK SV VVN  S+ IS++FSAIVLIFR
Sbjct: 316 MNYLNWDMQFMLGLSASTSVRVGNELGAGHPKVAKLSVMVVNGTSIVISIIFSAIVLIFR 375

Query: 61  ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
             LSKLFT++ EV+ AVSDLTPLLAIS FLNGIQPILSGVAIGSGWQA VAYVNLA YY+
Sbjct: 376 VGLSKLFTTDYEVIDAVSDLTPLLAISVFLNGIQPILSGVAIGSGWQATVAYVNLATYYV 435

Query: 121 IDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEV 168
           I LPI  V  FKT++GV GIWWGM+ GVLLQTITL ILT RTNW+ EV
Sbjct: 436 IGLPIGCVLAFKTSLGVAGIWWGMVAGVLLQTITLIILTARTNWDTEV 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494057|ref|XP_003617317.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355518652|gb|AET00276.1| Protein TRANSPARENT TESTA [Medicago truncatula]

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 127/175 (72%), Positives = 143/175 (81%), Gaps = 5/175 (2%)

Query: 1   MNYLNWDINAKLGLSAAA-----SVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAI 55
           MNYLNWD+   LGL AAA     SVR+SNELGAAHPRVAKF++FVVN NS+ ISVV SAI
Sbjct: 332 MNYLNWDMQVMLGLGAAARSCNFSVRISNELGAAHPRVAKFAIFVVNGNSILISVVLSAI 391

Query: 56  VLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNL 115
           +LIFR  L  LFTS+SEV++AVSDLTPLLAIS  LNGIQPILSGVAIGSGWQA+VAYVNL
Sbjct: 392 ILIFRDGLRNLFTSDSEVIEAVSDLTPLLAISVLLNGIQPILSGVAIGSGWQALVAYVNL 451

Query: 116 ACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEVTS 170
           ACYY+I L +  V GFKT++GV GIWWGMI GV +QT+TL ILT RTNW  EV  
Sbjct: 452 ACYYVIGLTVGCVLGFKTSLGVAGIWWGMILGVFIQTVTLIILTARTNWGVEVEK 506

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143500|emb|CBI22061.3| unnamed protein product [Vitis vinifera]

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 134/168 (79%), Positives = 148/168 (88%)

Query: 1   MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFR 60
           MNYLNWDI   LGLSA ASVR+SNELGAAHP VAKFSV VVNANS+ IS+ FSAIVLIF+
Sbjct: 241 MNYLNWDITFMLGLSAGASVRISNELGAAHPLVAKFSVLVVNANSIIISIFFSAIVLIFK 300

Query: 61  ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
             LSKLFTS++EV+ AVS+LTPLLAIS FLNGIQPILSGVAIGSGWQAIVAYVNLA YY+
Sbjct: 301 IGLSKLFTSDTEVINAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLATYYL 360

Query: 121 IDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEV 168
           I LPI  V GFKT++GVVGIWWGMI GVLLQT+TL +LT RTNW+AEV
Sbjct: 361 IGLPIGCVLGFKTSLGVVGIWWGMIIGVLLQTVTLIVLTARTNWDAEV 408

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446757|ref|XP_002282907.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera]

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 134/168 (79%), Positives = 148/168 (88%)

Query: 1   MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFR 60
           MNYLNWDI   LGLSA ASVR+SNELGAAHP VAKFSV VVNANS+ IS+ FSAIVLIF+
Sbjct: 316 MNYLNWDITFMLGLSAGASVRISNELGAAHPLVAKFSVLVVNANSIIISIFFSAIVLIFK 375

Query: 61  ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
             LSKLFTS++EV+ AVS+LTPLLAIS FLNGIQPILSGVAIGSGWQAIVAYVNLA YY+
Sbjct: 376 IGLSKLFTSDTEVINAVSNLTPLLAISVFLNGIQPILSGVAIGSGWQAIVAYVNLATYYL 435

Query: 121 IDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEV 168
           I LPI  V GFKT++GVVGIWWGMI GVLLQT+TL +LT RTNW+AEV
Sbjct: 436 IGLPIGCVLGFKTSLGVVGIWWGMIIGVLLQTVTLIVLTARTNWDAEV 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:2077725	507	TT12 "AT3G59030" [Arabidopsis	0.884	0.331	0.636	1.7e-52
TAIR|locus:2144421	498	AT5G38030 "AT5G38030" [Arabido	0.878	0.335	0.485	8.4e-42
TAIR|locus:2088822	500	AT3G26590 "AT3G26590" [Arabido	0.889	0.338	0.461	3.3e-40
TAIR|locus:2010401	522	RSH2 "AT1G12950" [Arabidopsis	0.889	0.323	0.461	1.1e-39
TAIR|locus:2036848	501	AT1G61890 "AT1G61890" [Arabido	0.826	0.313	0.503	7e-38
TAIR|locus:2027322	503	AT1G11670 "AT1G11670" [Arabido	0.826	0.312	0.509	8.9e-38
TAIR|locus:2028115	515	AT1G23300 "AT1G23300" [Arabido	0.889	0.328	0.455	4.9e-37
TAIR|locus:2126036	542	AT4G00350 "AT4G00350" [Arabido	0.884	0.309	0.470	6.3e-37
TAIR|locus:2206960	494	AT1G33110 "AT1G33110" [Arabido	0.894	0.344	0.411	5.1e-35
TAIR|locus:2037980	494	AT1G33090 "AT1G33090" [Arabido	0.836	0.321	0.440	1.3e-34

TAIR|locus:2077725 TT12 "AT3G59030" [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 107/168 (63%), Positives = 124/168 (73%)

Query:     1 MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKXXXXXXXXXXXXXXXXXXXXXLIFR 60
             M YLNWD+   LGLSAA SVRVSNELGA +PRVA                      L+FR
Sbjct:   318 MYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVNITTVLISSVLCVIVLVFR 377

Query:    61 ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
               LSK FTS++EV+ AVSDL PLLA+S FLNGIQPILSGVAIGSGWQA+VAYVNL  YY+
Sbjct:   378 VGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLVTYYV 437

Query:   121 IDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEV 168
             I LPI  V GFKT++GV GIWWGMI GV+LQT+TL +LT++TNW +EV
Sbjct:   438 IGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKTNWTSEV 485

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010231 "maintenance of seed dormancy" evidence=IMP

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010023 "proanthocyanidin biosynthetic process" evidence=IMP

GO:0015299 "solute:hydrogen antiporter activity" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 81/167 (48%), Positives = 105/167 (62%)

Query:     1 MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKXXXXXXXXXXXXXXXXXXXXXLIFR 60
             MN L W     +G++AA SVRVSNELGA HPR AK                     LIFR
Sbjct:   311 MNILGWTAMIAIGMNAAVSVRVSNELGAKHPRTAKFSLLVAVITSTVIGLAISIALLIFR 370

Query:    61 ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
                  LF  + EV+  V DLTP+LA+S  +N +QP+LSGVA+G+GWQA+VAYVN+ CYY+
Sbjct:   371 DKYPSLFVGDEEVIIVVKDLTPILAVSIVINNVQPVLSGVAVGAGWQAVVAYVNIVCYYV 430

Query:   121 IDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAE 167
               +P   + G+K N GV+GIW GM+TG ++QTI L  +  RTNW+ E
Sbjct:   431 FGIPFGLLLGYKLNFGVMGIWCGMLTGTVVQTIVLTWMICRTNWDTE 477

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP;RCA

TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 78/169 (46%), Positives = 106/169 (62%)

Query:     1 MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKXXXXXXXXXXXXXXXXXXXXXLIFR 60
             MN L W     +G++ A SVRVSNELGA HPR AK                     LIFR
Sbjct:   311 MNILGWTAMIAIGMNTAVSVRVSNELGANHPRTAKFSLLVAVITSTLIGFIVSMILLIFR 370

Query:    61 ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
                  LF  + +V+  V +LTP+LA+S  +N +QP+LSGVA+G+GWQA+VAYVN+ACYY+
Sbjct:   371 DQYPSLFVKDEKVIILVKELTPILALSIVINNVQPVLSGVAVGAGWQAVVAYVNIACYYV 430

Query:   121 IDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEVT 169
               +P   + G+K N GV+GIW GM+TG ++QTI L  +  +TNW+ E +
Sbjct:   431 FGIPFGLLLGYKLNYGVMGIWCGMLTGTVVQTIVLTWMICKTNWDTEAS 479

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 78/169 (46%), Positives = 101/169 (59%)

Query:     1 MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKXXXXXXXXXXXXXXXXXXXXXLIFR 60
             MN L W      G +AA SVRVSNELGA+HPR AK                     L FR
Sbjct:   333 MNILGWAAMVAFGTNAAVSVRVSNELGASHPRTAKFSLVVAVILSTAIGMFIAAGLLFFR 392

Query:    61 ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
              +   LF  + EV   V +LTP+LA    +N +QP+LSGVA+G+GWQA+VAYVN+ACYY+
Sbjct:   393 NEYPVLFVEDEEVRNVVRELTPMLAFCIVINNVQPVLSGVAVGAGWQAVVAYVNIACYYL 452

Query:   121 IDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEVT 169
               +P   + GFK   GV+GIWWGM+TG  +Q+I L  +  +TNW  E +
Sbjct:   453 FGVPFGLLLGFKLEYGVMGIWWGMVTGTFVQSIVLTWMICKTNWEKEAS 501

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 79/157 (50%), Positives = 104/157 (66%)

Query:    12 LGLSAAASVRVSNELGAAHPRVAKXXXXXXXXXXXXXXXXXXXXXLIFRADLSKLFTSNS 71
             +G +AAASVRVSNELGA +PR A                      L +R  +S  FT + 
Sbjct:   325 VGFNAAASVRVSNELGAGNPRAAAFSTVVTTGVSFLLSVFEAIVVLSWRHVISYAFTDSP 384

Query:    72 EVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGF 131
              V +AV+DL+P LAI+  LNGIQP+LSGVA+G GWQA VAYVN+ CYY++ +P+ +V GF
Sbjct:   385 AVAEAVADLSPFLAITIVLNGIQPVLSGVAVGCGWQAFVAYVNIGCYYVVGIPVGFVLGF 444

Query:   132 KTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEV 168
               ++G  GIW GMI G L+QTI L I+T+RT+W+ EV
Sbjct:   445 TYDMGAKGIWTGMIGGTLMQTIILVIVTLRTDWDKEV 481

GO:0005215 "transporter activity" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009651 "response to salt stress" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2027322 AT1G11670 "AT1G11670" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 80/157 (50%), Positives = 104/157 (66%)

Query:    12 LGLSAAASVRVSNELGAAHPRVAKXXXXXXXXXXXXXXXXXXXXXLIFRADLSKLFTSNS 71
             +G +AAASVRVSNELGA +PR A                      L +R  +S +FT + 
Sbjct:   328 VGFNAAASVRVSNELGAGNPRSAAFSTAVTTGVSFLLSLFEAIVILSWRHVISYIFTDSP 387

Query:    72 EVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGF 131
              V +AV++L+P LAI+  LNG+QP+LSGVA+G GWQA VAYVN+ CYYI+ +PI YV GF
Sbjct:   388 AVAEAVAELSPFLAITIVLNGVQPVLSGVAVGCGWQAYVAYVNIGCYYIVGIPIGYVLGF 447

Query:   132 KTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEV 168
               ++G  GIW GMI G L+QTI L I+T RT+W+ EV
Sbjct:   448 TYDMGARGIWTGMIGGTLMQTIILVIVTFRTDWDKEV 484

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2028115 AT1G23300 "AT1G23300" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 77/169 (45%), Positives = 99/169 (58%)

Query:     1 MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKXXXXXXXXXXXXXXXXXXXXXLIFR 60
             MN L W I    G +AA SVR SNELGA HPR AK                     ++ R
Sbjct:   310 MNILGWPIMVAFGFNAAVSVRESNELGAEHPRRAKFLLIVAMITSVSIGIVISVTLIVLR 369

Query:    61 ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
                  +F+ + EV   V  LTPLLA++  +N IQP+LSGVA+G+GWQ IVAYVN+ CYY+
Sbjct:   370 DKYPAMFSDDEEVRVLVKQLTPLLALTIVINNIQPVLSGVAVGAGWQGIVAYVNIGCYYL 429

Query:   121 IDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEVT 169
               +PI  V G+K  +GV GIW GM+TG ++QT  L  +  RTNW  E +
Sbjct:   430 CGIPIGLVLGYKMELGVKGIWTGMLTGTVVQTSVLLFIIYRTNWKKEAS 478

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2126036 AT4G00350 "AT4G00350" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 79/168 (47%), Positives = 104/168 (61%)

Query:     1 MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKXXXXXXXXXXXXXXXXXXXXXLIFR 60
             MN   W+    +G++AA SVRVSNELG+ HPR AK                     LI R
Sbjct:   353 MNINGWEGMLFIGINAAISVRVSNELGSGHPRAAKYSVIVTVIESLVIGVVCAIVILITR 412

Query:    61 ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
              D + +FT + E+ +AV+DL  LL I+  LN +QP++SGVA+G GWQA VAY+NL CYY 
Sbjct:   413 DDFAVIFTESEEMRKAVADLAYLLGITMILNSLQPVISGVAVGGGWQAPVAYINLFCYYA 472

Query:   121 IDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEV 168
               LP+ ++ G+KT++GV GIW GMI G  LQT+ L  +   TNWN EV
Sbjct:   473 FGLPLGFLLGYKTSLGVQGIWIGMICGTSLQTLILLYMIYITNWNKEV 520

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 70/170 (41%), Positives = 105/170 (61%)

Query:     1 MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKXXXXXXXXXXXXXXXXXXXXXLIFR 60
             +N    ++   LG  AAASVRVSNELG+ +P+ AK                     L  R
Sbjct:   302 LNINGLEMMIALGFLAAASVRVSNELGSGNPKGAKFATLTAVFTSLSLGIVLFFVFLFLR 361

Query:    61 ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
               +S +FT++  V   V+DL+PLLA S  +N +QP+LSGVA+G+GWQ  V YVNLACYY+
Sbjct:   362 GRVSYIFTTSEAVAAEVADLSPLLAFSILMNSVQPVLSGVAVGAGWQGYVTYVNLACYYL 421

Query:   121 IDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEVTS 170
             + +PI  + G+   + V G+W GM+ G+ +QT  L ++T+RT+W+ +V++
Sbjct:   422 VGIPIGIILGYVVGLQVKGVWIGMLFGIFVQTCVLTVMTLRTDWDQQVST 471

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2037980 AT1G33090 "AT1G33090" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 70/159 (44%), Positives = 99/159 (62%)

Query:    12 LGLSAAASVRVSNELGAAHPRVAKXXXXXXXXXXXXXXXXXXXXXLIFRADLSKLFTSNS 71
             LG  AA SVRVSNELG  +P  AK                     L  R  +S +FT++ 
Sbjct:   313 LGFLAAVSVRVSNELGRGNPEGAKFATIVAVFTSLSIGLVLFFVFLFLRGRISYIFTTSE 372

Query:    72 EVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGF 131
              V   V+DL+PLLA S  LN +QP+LSGVA+G+GWQ  VAY+NLACYY++ +P+  V G+
Sbjct:   373 AVAAEVADLSPLLAFSILLNSVQPVLSGVAVGAGWQGYVAYINLACYYLLGIPVGLVLGY 432

Query:   132 KTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEVTS 170
                + V G+W GM+ G+ +QT  L I+T+RT+W+ +V++
Sbjct:   433 VVGLQVKGVWIGMLFGIFVQTCVLTIMTLRTDWDQQVST 471

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYT3	TT12_ARATH	No assigned EC number	0.7023	0.8842	0.3313	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	2e-54
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	1e-18
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	1e-17
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	7e-17
pfam01554	161	pfam01554, MatE, MatE	1e-15
PRK01766	456	PRK01766, PRK01766, multidrug efflux protein; Revi	5e-15
cd13142	444	cd13142, MATE_like_12, Uncharacterized subfamily o	6e-15
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	1e-12
cd13139	448	cd13139, MATE_like_14, Uncharacterized subfamily o	6e-11
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	2e-09
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	5e-09
PRK00187	464	PRK00187, PRK00187, multidrug efflux protein NorA;	1e-08
cd13136	424	cd13136, MATE_DinF_like, DinF and similar proteins	5e-08
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	6e-08
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	1e-06
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	3e-05
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	3e-04

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score =  177 bits (452), Expect = 2e-54
 Identities = 69/168 (41%), Positives = 105/168 (62%)

Query: 1   MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFR 60
           +   +      LG+S AASVRV NELGA +P+ AK +  V    S+ I VV + ++L+ R
Sbjct: 267 LTTTSLLYMIPLGISIAASVRVGNELGAGNPKRAKLAAIVALILSLVIGVVVAILLLVLR 326

Query: 61  ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
              + LFTS+ EV+  V+DL P+LA+    +G+Q +LSGV  G G Q + AYVNL  YY+
Sbjct: 327 DVWAYLFTSDEEVIALVADLLPILALFQIFDGLQAVLSGVLRGCGRQKLGAYVNLVAYYL 386

Query: 121 IDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRTNWNAEV 168
           I LP+  +  F   +G+ G+W G+I G++LQ + L ++ +RT+W+ E 
Sbjct: 387 IGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAVILLLIILRTDWDKEA 434

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 82.2 bits (204), Expect = 1e-18
 Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 6/149 (4%)

Query: 12  LGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNS 71
           LG+S AA+VRV   LGA  P  A+ +  V     V  + + + ++L+F   ++ L+T++ 
Sbjct: 282 LGISMAATVRVGFALGAGDPADARRAGLVGLGLGVGFAALTALLLLLFPEQIAGLYTNDP 341

Query: 72  EVVQAVSDLTPLLAISAF---LNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYV 128
            V+        LL  +A     +GIQ + +G   G     +   + L  Y+ I LP+ Y+
Sbjct: 342 AVIAL---AASLLVFAALFQLFDGIQVVAAGALRGYKDTRVPFLLALISYWGIGLPLGYL 398

Query: 129 RGFKTNIGVVGIWWGMITGVLLQTITLNI 157
             F T +G  G+W G+I G+ L  I L  
Sbjct: 399 LAFTTGLGAFGVWIGLIIGLALAAILLLW 427

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 79.2 bits (196), Expect = 1e-17
 Identities = 46/153 (30%), Positives = 84/153 (54%), Gaps = 1/153 (0%)

Query: 12  LGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNS 71
            G++ A ++ V   LGA + + A+ +  +    S+ I+++ + ++L+FR  +  LFT++ 
Sbjct: 294 FGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDP 353

Query: 72  EVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGF 131
           EV+     L  + A+    +GIQ +LSGV  G+G   I   ++L  Y+   LP+AY+ GF
Sbjct: 354 EVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGF 413

Query: 132 KTNIGVVGIWWGMITGVLLQTITLNILTVRTNW 164
              +G+ G+W G    ++L+ I L +   R  W
Sbjct: 414 -FFLGLAGVWIGFPLSLILRAILLLLRLRRGRW 445

Length = 455

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 77.2 bits (191), Expect = 7e-17
 Identities = 44/152 (28%), Positives = 69/152 (45%)

Query: 13  GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSE 72
           G S AAS  V   LGA  P  A+          V    +   ++ IF   L+ LFT + E
Sbjct: 280 GFSMAASTLVGQNLGAGDPDEARRYGKRALRLGVLFMGLLGLLLFIFAPPLASLFTPDPE 339

Query: 73  VVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK 132
           V++       ++A+S     I  +LSG   G+G       +NL   +++ LP+AY+ GF 
Sbjct: 340 VIELGVLYLRIVALSQPFLAISFVLSGALRGAGDTRPPLIINLISMWLVRLPLAYLLGFV 399

Query: 133 TNIGVVGIWWGMITGVLLQTITLNILTVRTNW 164
             +G+ GIW  M    +++ I L     +  W
Sbjct: 400 LGLGLTGIWLAMFVDTIVRAILLLYRFRKGKW 431

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 70.3 bits (173), Expect = 1e-15
 Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%)

Query: 12  LGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNS 71
           LGLS A +  V   LGA + + A  ++      S+ IS+  + ++++FR  +  LFT + 
Sbjct: 46  LGLSTALTTLVGQALGAGNFKRAGVALRQGLILSLLISLPIALLIILFREPILSLFTQDE 105

Query: 72  EVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYV 128
           EV++  S    +LA+      +Q +LSG   G+G      Y+NL    ++++P+ Y+
Sbjct: 106 EVLELASKYLRILALGIPFLSLQFVLSGFLRGAGDTKPPLYINLIS-LLLNIPLNYL 161

The MatE domain. Length = 161

>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed

 Score = 71.8 bits (177), Expect = 5e-15
 Identities = 38/136 (27%), Positives = 70/136 (51%)

Query: 12  LGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNS 71
           L L+ A ++RV  ELGA     A+   ++  A  + ++++ +  +++FR  ++ L+T + 
Sbjct: 292 LSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDP 351

Query: 72  EVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGF 131
           EVV   S L    A+  F + IQ I SG   G     ++ ++    Y+++ LP+ Y+   
Sbjct: 352 EVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILAL 411

Query: 132 KTNIGVVGIWWGMITG 147
              +G  G W G+I G
Sbjct: 412 TDPMGPFGFWIGLIIG 427

Length = 456

>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 71.5 bits (176), Expect = 6e-15
 Identities = 36/153 (23%), Positives = 68/153 (44%)

Query: 12  LGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNS 71
            GL+ A S  V   LGA     A+  V         I V+   +  +F   + ++F ++ 
Sbjct: 290 FGLARATSTMVGQNLGAGQIDRAEEIVKKAALLIFLILVIGGVLAFLFAEPIVRVFINDP 349

Query: 72  EVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGF 131
           EV++  +D   ++A S    G+  +++G   GSG       +++   ++I +P+AY+  +
Sbjct: 350 EVIKEGADFLRIVAPSFPFFGLFQVINGAFRGSGHTLTAMIISILRLWVIRIPLAYLLAY 409

Query: 132 KTNIGVVGIWWGMITGVLLQTITLNILTVRTNW 164
              +GV GIW  M    ++  +       R  W
Sbjct: 410 VLGLGVTGIWIAMAISNIVAALIALAWFKRGTW 442

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 444

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 38/153 (24%), Positives = 69/153 (45%)

Query: 13  GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSE 72
            +  A S  V+  +GA     AK  +      S+ I ++   +V  F   L  LFTS+ E
Sbjct: 279 AIGQAVSTFVAQNIGAGKIERAKKGLRTGIIISLIIGLIIILLVFFFAPQLLGLFTSDPE 338

Query: 73  VVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK 132
           V++  ++   + +I   L GI  + +G+  G G       +++   +++ +P+AY+    
Sbjct: 339 VIEIGAEYLRIYSIDYILFGILFVFNGLFRGLGKTKFPMIISILRLWLVRIPLAYLLSRL 398

Query: 133 TNIGVVGIWWGMITGVLLQTITLNILTVRTNWN 165
           T +G+ GIW  M    +L  I   I   +  W 
Sbjct: 399 TGLGLFGIWLAMPISNILSAIICIIYYRKGRWK 431

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 59.9 bits (146), Expect = 6e-11
 Identities = 38/152 (25%), Positives = 68/152 (44%)

Query: 13  GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSE 72
           GLS AA+  V   LGA  P  A+ SV+     ++    + S +  +F   L   FT++ E
Sbjct: 293 GLSNAAATLVGQNLGAGQPDRAEKSVWRAGKYNMVFLGIVSLVFFLFAEPLVSFFTTDPE 352

Query: 73  VVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK 132
           V+    +   ++++     G   +LS    G+G       +NL  +++  +P+AY+    
Sbjct: 353 VIAIAVEALRIISLGYIFYGYGMVLSQAFNGAGDTKTPTLINLVGFWLFQIPLAYLLARH 412

Query: 133 TNIGVVGIWWGMITGVLLQTITLNILTVRTNW 164
            N+G  G++  +     +  I   IL  R  W
Sbjct: 413 LNLGPKGVFIAIPIAETVLAIAAIILFRRGKW 444

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 448

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 1/144 (0%)

Query: 12  LGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNS 71
           LGL+ AA   V   LGA +   A+   +V     + I  V   ++L+F   +  LFT++ 
Sbjct: 273 LGLAQAALPVVGQNLGAGNFDRARRITWVALLIGLLIGAVLGLLILLFPEPILSLFTNDP 332

Query: 72  EVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGF 131
           E ++       +LAI     GI  +L      +G       V+L  Y+++ LP+AYV   
Sbjct: 333 EFLELAVSYLRILAIYYLFVGIGYVLQAGFQAAGRTLKSLIVSLLSYWVVRLPLAYV-LA 391

Query: 132 KTNIGVVGIWWGMITGVLLQTITL 155
              +G+ GIW  ++  ++L  + L
Sbjct: 392 YLGLGLYGIWLALVISLILAALVL 415

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 54.4 bits (132), Expect = 5e-09
 Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 6/138 (4%)

Query: 12  LGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNS 71
           L +  A  + V + +GA     A   V       + +S+  + ++ +FR  +  LFT + 
Sbjct: 281 LAIGQATQIIVGHLVGAGDFDEAYKRVLKSLKIGLLVSLAVALLLALFREPILGLFTDDP 340

Query: 72  EVVQAVSDLTPLLAISAFL---NGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYV 128
           E++        LL IS  L        +L G    +G       + +   + I +P+AY+
Sbjct: 341 EIIAL---GKTLLLISILLEPGRAFNIVLIGSLRAAGDARFPVLIGIISMWGISVPLAYL 397

Query: 129 RGFKTNIGVVGIWWGMIT 146
            G    +G++G+W     
Sbjct: 398 LGIVLGLGLLGVWIAFAA 415

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 13/152 (8%)

Query: 13  GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFT---- 68
           GLS A ++RV    GA     A+ +  V       + ++F+ +  +    +  LF     
Sbjct: 290 GLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRND 349

Query: 69  -SNSEVVQ-AVSDLTPLLAISA---FLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDL 123
            + +E+VQ AVS    LLA++A     +G Q I  G   G         + LACY+++  
Sbjct: 350 PAFAEIVQLAVS----LLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGA 405

Query: 124 PIAYVRGFKTNIGVVGIWWGMITGVLLQTITL 155
           P+A++  F    G VG+WWG+  G+    + L
Sbjct: 406 PLAWLLAFTLGWGAVGVWWGLALGLACAAVAL 437

Length = 464

>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 51.4 bits (124), Expect = 5e-08
 Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 3/143 (2%)

Query: 13  GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSE 72
           G + AA   V   LGA   + A+     +    + + V+ + +  +    + +LFT +  
Sbjct: 279 GFAYAAEALVGRALGAGDRKAARRVARRLLQWGLGLGVLLALLFFLGGEPIIRLFTDDPA 338

Query: 73  VVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK 132
           V+   +   P LA+   +  +  +L G+ IG+     +    L     + LP+ ++    
Sbjct: 339 VLALAATYLPWLALLPPIGALAFVLDGIFIGATDTRYLRNSMLVS-LAVFLPLLFL--LV 395

Query: 133 TNIGVVGIWWGMITGVLLQTITL 155
              G  G+W  +I  +LL+ +TL
Sbjct: 396 PLWGNHGLWLALILFMLLRGLTL 418

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 22/73 (30%), Positives = 40/73 (54%)

Query: 13  GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSE 72
           G   A S+ V   LGA  P+ AK    V    S+ + +V + I+++FR  +++LFT++ E
Sbjct: 270 GFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPE 329

Query: 73  VVQAVSDLTPLLA 85
           V++  +     +A
Sbjct: 330 VLELAAIYLIFVA 342

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 9/151 (5%)

Query: 12  LGLSAAASVRVSNELGA-AHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSN 70
           +GLS      +    GA  + RV +     +   ++   +V   I+L+F   +  LFT +
Sbjct: 280 IGLSQGLQPIIGYNYGAGNYDRVKQALKLALIV-ALIYGLVLFLILLLFPEQIVSLFTDD 338

Query: 71  SEVVQAVSDLTPLLAISAFLNGIQPILSG--VAIGSGWQAIVAYVNLACYYIIDLPIAYV 128
            E++   + +  +  ++  L GI  +LSG   AIG   +A +  ++L    +  +P+  +
Sbjct: 339 PELIALAARILRIFLLAFPLAGINIVLSGYFQAIGKAKRAAL--LSLLRQGLFLIPLLLI 396

Query: 129 RGFKTNIGVVGIWWGM-ITGVLLQTITLNIL 158
                  G+ GIW    +  +L   + L +L
Sbjct: 397 --LPRLFGLDGIWLAFPLAEILTLLLALILL 425

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 4/144 (2%)

Query: 13  GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSE 72
           GL  A S  V   LGA  P +A          ++   ++   + L+F   L  +FT  ++
Sbjct: 285 GLGIAVSSLVGQALGAGRPDLAMRVTRRGLKLALAYMLLLGILFLLFPELLLSIFTPGAD 344

Query: 73  VVQAVSDLTPLLAISAF---LNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVR 129
                    PLL   A     + +  + +G   G+G    V    L   ++  LP AY+ 
Sbjct: 345 FALIAELAVPLLRFVAAYILFDALALVFAGALRGAGDTRFVMLAELIVAWLYLLPPAYLL 404

Query: 130 GFKTNIGVVGIWWGMITGVLLQTI 153
                 G+ G W      V++  +
Sbjct: 405 VVL-GAGLAGAWTVETVYVIVLAL 427

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 26/154 (16%), Positives = 62/154 (40%), Gaps = 2/154 (1%)

Query: 4   LNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADL 63
           +   I   +GLS   S  +S  +GA     A+  +      ++ + ++ +A++L F   +
Sbjct: 40  IALLIALGVGLSVGTSALISQAIGAGDEEKARRVLVQSIVLAILLGLLLAALLLFFSPLI 99

Query: 64  SKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYY--II 121
             L  +  EV++  +    +L +   +  +  +LSG+  G G       +++      I+
Sbjct: 100 LSLLGAEEEVIELAATYLTILILGLPITFLGAVLSGILQGEGDTRTAMIISVLSNLLNIL 159

Query: 122 DLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITL 155
             P+         +G+ G     +   ++  + L
Sbjct: 160 LDPLLIFGLGPPELGIAGAALATVISYVIGALLL 193

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.96
PRK10189	478	MATE family multidrug exporter; Provisional	99.96
PRK01766	456	multidrug efflux protein; Reviewed	99.95
PRK00187	464	multidrug efflux protein NorA; Provisional	99.95
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.93
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.93
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.93
PRK00187	464	multidrug efflux protein NorA; Provisional	99.92
PRK10189	478	MATE family multidrug exporter; Provisional	99.92
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.92
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.89
PRK01766	456	multidrug efflux protein; Reviewed	99.89
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.85
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.83
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.76
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.76
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.73
PRK15099	416	O-antigen translocase; Provisional	99.54
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.51
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.5
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.38
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.37
PRK15099	416	O-antigen translocase; Provisional	99.3
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.27
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.19
PRK10459	492	colanic acid exporter; Provisional	99.09
COG2244	480	RfbX Membrane protein involved in the export of O-	99.06
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.02
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	98.45
COG0728	518	MviN Uncharacterized membrane protein, putative vi	98.29
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	98.12
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	98.02
PRK10459	492	colanic acid exporter; Provisional	97.82
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	97.59
COG2244	480	RfbX Membrane protein involved in the export of O-	97.17
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	96.87
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	96.42
COG4267	467	Predicted membrane protein [Function unknown]	92.15

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.96  E-value=4.7e-28  Score=202.41  Aligned_cols=169  Identities=27%  Similarity=0.474  Sum_probs=163.3

Q ss_pred             cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607            2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT   81 (190)
Q Consensus         2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l   81 (190)
                      ++.++.++++.|+++|+++++||++|+||+||+++..+.+..++..++...+.+++.+++++.++|++|||+.+.+..++
T Consensus       284 ~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l  363 (455)
T COG0534         284 RIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILL  363 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607           82 PLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR  161 (190)
Q Consensus        82 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~  161 (190)
                      ++.+...++++.+.+..+++||.||++.|++.++.++|++++|+.|++.... +|..|+|+++..++.+..+...+++++
T Consensus       364 ~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~  442 (455)
T COG0534         364 LIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRR  442 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999986 799999999999999999999999999


Q ss_pred             cchHHHHHHH
Q 029607          162 TNWNAEVTSW  171 (190)
Q Consensus       162 ~~~~~~~~~~  171 (190)
                      .+|++...+.
T Consensus       443 ~~~~~~~~~~  452 (455)
T COG0534         443 GRWRRKAVAA  452 (455)
T ss_pred             hhhhhhhhhc
Confidence            9998776554

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.96  E-value=1.6e-27  Score=200.47  Aligned_cols=166  Identities=17%  Similarity=0.169  Sum_probs=161.0

Q ss_pred             cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607            2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT   81 (190)
Q Consensus         2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l   81 (190)
                      |++++.+++..|+++|+++++||++|+||+||+|+..+.+...+.++++.++++.+.+++++.++|++|||+.+.+..++
T Consensus       302 ~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l  381 (478)
T PRK10189        302 SIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILI  381 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607           82 PLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR  161 (190)
Q Consensus        82 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~  161 (190)
                      ++.+...++++.+.+..+.+||.||++.++++++.+.|++++|+.|++....++|+.|+|++..+++.+.+++.++++++
T Consensus       382 ~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~  461 (478)
T PRK10189        382 WLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVS  461 (478)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999998888999999999999999999999999999


Q ss_pred             cchHHH
Q 029607          162 TNWNAE  167 (190)
Q Consensus       162 ~~~~~~  167 (190)
                      .+|++.
T Consensus       462 ~~W~~~  467 (478)
T PRK10189        462 GRWLWK  467 (478)
T ss_pred             CccccC
Confidence            999873

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.95  E-value=1.2e-25  Score=188.19  Aligned_cols=166  Identities=25%  Similarity=0.425  Sum_probs=158.2

Q ss_pred             cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607            2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT   81 (190)
Q Consensus         2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l   81 (190)
                      ++.++.++++.|++.|+++++||++|+||+||+++..+.++.++..++++.+.+.+.+++++.++|++|||+.+.+..++
T Consensus       282 ~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l  361 (456)
T PRK01766        282 NFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLL  361 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607           82 PLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR  161 (190)
Q Consensus        82 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~  161 (190)
                      ++..+..++++++.+..+++||.||++.+++.++++.|++++|..|++.+..++|+.|+|+++.+++.+.+++.++++++
T Consensus       362 ~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~  441 (456)
T PRK01766        362 LFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK  441 (456)
T ss_pred             HHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988999999999998888999999999999999999998888877


Q ss_pred             cchHHH
Q 029607          162 TNWNAE  167 (190)
Q Consensus       162 ~~~~~~  167 (190)
                      .+|+..
T Consensus       442 ~~~~~~  447 (456)
T PRK01766        442 LQRQPS  447 (456)
T ss_pred             HHHHHh
Confidence            766653

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.95  E-value=9.7e-26  Score=189.16  Aligned_cols=164  Identities=23%  Similarity=0.414  Sum_probs=153.0

Q ss_pred             cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCC--cH---HHHHH
Q 029607            2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTS--NS---EVVQA   76 (190)
Q Consensus         2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--~~---~v~~~   76 (190)
                      ++..+.+.+..|++.|+++++||++|+||+||+++..+.++..+.+++++++++.+.+++++.++|++  ||   |+.+.
T Consensus       279 ~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~  358 (464)
T PRK00187        279 QIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQL  358 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999964  44   79999


Q ss_pred             HHhHHHHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q 029607           77 VSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLN  156 (190)
Q Consensus        77 ~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~  156 (190)
                      +..|+++.+++.++++.+.++.+++||.||++.+++.++.+.|++++|++|++.+.+++|+.|+|+++.+++.+..+...
T Consensus       359 ~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~  438 (464)
T PRK00187        359 AVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALT  438 (464)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998899999999999999999988877


Q ss_pred             HHHhhcchH
Q 029607          157 ILTVRTNWN  165 (190)
Q Consensus       157 ~~~~~~~~~  165 (190)
                      ..+++++|+
T Consensus       439 ~~~~~~~~~  447 (464)
T PRK00187        439 LAFEWKTAR  447 (464)
T ss_pred             HHHHHHHHH
Confidence            666554443

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.93  E-value=1.7e-24  Score=181.08  Aligned_cols=185  Identities=17%  Similarity=0.242  Sum_probs=164.4

Q ss_pred             cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607            2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT   81 (190)
Q Consensus         2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l   81 (190)
                      ++..+.+.+..|++.|+++++||++|+||+|++++..+++++.+++++++..++.+.+++++..+++.|+|+.+.+.+|+
T Consensus        60 ~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl  139 (455)
T COG0534          60 PIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYL  139 (455)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHH
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHh-cC-CCchhHHHHHHHHHHHHHHHHHHHH
Q 029607           82 PLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK-TN-IGVVGIWWGMITGVLLQTITLNILT  159 (190)
Q Consensus        82 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~  159 (190)
                      ++..++.|+..+..++.+.+|+.||+|.||++++++ .+.|++++|++.++ ++ +|+.|+.+|+.+++++..+...+++
T Consensus       140 ~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~-~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~  218 (455)
T COG0534         140 RIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLG-NLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYL  218 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHH-HHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999 59999999999999 57 9999999999999999999988888


Q ss_pred             hhcchH-HHHHHHHHHhhhHhhcchhHhh
Q 029607          160 VRTNWN-AEVTSWFYELCYVIVSNLSQLL  187 (190)
Q Consensus       160 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  187 (190)
                      .+++.. ........+.++...+++.++.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~i~~lG  247 (455)
T COG0534         219 LRKKRLLSLFKKKLLKPDRKLLKEILRLG  247 (455)
T ss_pred             HhcchhhhhhhhhccCCCHHHHHHHHHhc
Confidence            776642 2222222355556666655543

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.93  E-value=5.1e-24  Score=177.71  Aligned_cols=158  Identities=9%  Similarity=0.042  Sum_probs=148.7

Q ss_pred             chhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHH
Q 029607            3 YLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTP   82 (190)
Q Consensus         3 i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~   82 (190)
                      +..+.+.+..+++.++++++||++|+||+||+++..++++..+.++++++..+...+.+++.++++.|||+.+.+.+|++
T Consensus        54 i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~  133 (441)
T PRK10367         54 ATSFLFMLLLFLRMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLE  133 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            45677888899999999999999999999999999999999999999999989899999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607           83 LLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR  161 (190)
Q Consensus        83 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~  161 (190)
                      +..++.|+.....++.+++||.||++.|++.++++ .+++++++|++.+.+++|+.|+++|+.+++.+..++..+++.+
T Consensus       134 i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~  211 (441)
T PRK10367        134 IRWLSAPASLANLVLLGWLLGVQYARAPVILLVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK  211 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 5889999999999999999999999999999988877666654

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.93  E-value=5.7e-24  Score=178.01  Aligned_cols=157  Identities=17%  Similarity=0.251  Sum_probs=146.4

Q ss_pred             cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCC-cHHHHHHHHhH
Q 029607            2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTS-NSEVVQAVSDL   80 (190)
Q Consensus         2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~-~~~v~~~~~~~   80 (190)
                      ++..+.+++..|++.|+++++||++|+||+||+++..+.++.+++..+++++++.+.+++++.++|++ |||+.+.+.+|
T Consensus       278 ~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~  357 (453)
T PRK09575        278 YLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVG  357 (453)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHH
Confidence            56788899999999999999999999999999999999999999999999999999999999999995 89999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 029607           81 TPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTV  160 (190)
Q Consensus        81 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~  160 (190)
                      +++..++.++++.+.+..+++||.||++.++..++.+ +++++|..|++...  +|+.|+|+++.+++.+..++...+++
T Consensus       358 l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~  434 (453)
T PRK09575        358 IRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLW  434 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999887 57899999998754  59999999999999998887766654


Q ss_pred             h
Q 029607          161 R  161 (190)
Q Consensus       161 ~  161 (190)
                      +
T Consensus       435 ~  435 (453)
T PRK09575        435 R  435 (453)
T ss_pred             H
Confidence            3

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.92  E-value=1.6e-23  Score=175.84  Aligned_cols=158  Identities=18%  Similarity=0.062  Sum_probs=143.3

Q ss_pred             chhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHH
Q 029607            3 YLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTP   82 (190)
Q Consensus         3 i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~   82 (190)
                      +..+.+++..|++.|+++++||++|+||+||+++..++++.++.+++++..++.+ +.+++.++|+.|||+.+.+.+|++
T Consensus        54 i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~  132 (464)
T PRK00187         54 SYSFVSIFCVGVIAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLH  132 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHH
Confidence            4567778899999999999999999999999999999999999999998777655 679999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHHHHHH
Q 029607           83 LLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKT----NIGVVGIWWGMITGVLLQTITLNIL  158 (190)
Q Consensus        83 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~----~~g~~g~~~a~~i~~~~~~~~~~~~  158 (190)
                      +..++.|+..+...+++++||.||++.+++.++++ .+++++++|++.+++    ++|+.|+++|+++++....+...++
T Consensus       133 i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~-~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~  211 (464)
T PRK00187        133 LLPFALPGYLSFMALRGFTSALGRAGPVMVISLAG-AVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALY  211 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH-HHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 578999999999763    5899999999999988877766655


Q ss_pred             Hhhc
Q 029607          159 TVRT  162 (190)
Q Consensus       159 ~~~~  162 (190)
                      ++++
T Consensus       212 ~~~~  215 (464)
T PRK00187        212 IRRH  215 (464)
T ss_pred             HHhc
Confidence            5543

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.92  E-value=9.7e-24  Score=177.62  Aligned_cols=158  Identities=17%  Similarity=0.189  Sum_probs=147.1

Q ss_pred             cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccC--CcHHHHHHHHh
Q 029607            2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFT--SNSEVVQAVSD   79 (190)
Q Consensus         2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~~~~v~~~~~~   79 (190)
                      ++..+.+.+..|++.|+++++||++|+||+||+++..++++.++..++++.+.+.+.+++++.++|+  .|||+.+.+.+
T Consensus        72 ~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~  151 (478)
T PRK10189         72 SFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALT  151 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHH
Confidence            4567788899999999999999999999999999999999999999999999999999999999995  69999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHh----cCCCchhHHHHHHHHHHHHHHHH
Q 029607           80 LTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK----TNIGVVGIWWGMITGVLLQTITL  155 (190)
Q Consensus        80 ~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~  155 (190)
                      |+++..++.|+.+++.++.+++||.||++.+++.++.+ +++++++++++.+.    +++|+.|+|+|+.+++.+..++.
T Consensus       152 Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~  230 (478)
T PRK10189        152 YLELTVWSYPAAAITLIGSGALRGAGNTKIPLLINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAI  230 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999997 68999999999986    37899999999999999988876


Q ss_pred             HHHHh
Q 029607          156 NILTV  160 (190)
Q Consensus       156 ~~~~~  160 (190)
                      .+++.
T Consensus       231 ~~~~~  235 (478)
T PRK10189        231 IWVLM  235 (478)
T ss_pred             HHHHH
Confidence            65554

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.92  E-value=6.7e-24  Score=177.58  Aligned_cols=159  Identities=11%  Similarity=0.033  Sum_probs=148.8

Q ss_pred             chhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHH
Q 029607            3 YLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTP   82 (190)
Q Consensus         3 i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~   82 (190)
                      +..+...+..+++.|+++++||++|+||+||+++..++++.++.+++++++++...+++++.++|+.|+|+.+.+.+|++
T Consensus        57 ~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~  136 (453)
T PRK09575         57 VIGIILGIGLMVGMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQ  136 (453)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHH
Confidence            44566677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 029607           83 LLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRT  162 (190)
Q Consensus        83 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~  162 (190)
                      +..++.++........+++|+.||++.+++.++.+ .++++++++++.+.+++|+.|+++|+.+++.+..+...+++.++
T Consensus       137 i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~  215 (453)
T PRK09575        137 VLIWGCLFTLGAIALPFLLRNDESPNLATGLMVIG-ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS  215 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999 58999999999998899999999999999999988877666543

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.89  E-value=1.3e-21  Score=163.23  Aligned_cols=157  Identities=18%  Similarity=0.206  Sum_probs=132.7

Q ss_pred             cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607            2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT   81 (190)
Q Consensus         2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l   81 (190)
                      |+.++.++++.|+++|+++++||++|+||+||+|+..+.+...+.+++.+++++.+.+++++.++|++|||+.+.+..++
T Consensus       275 ~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l  354 (441)
T PRK10367        275 TLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYL  354 (441)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHhccC---cchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 029607           82 PLLAISAFLNGIQPILSGVAIGSG---WQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNIL  158 (190)
Q Consensus        82 ~i~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~  158 (190)
                      ++..+..+.........++++|.+   |++.++++++++.|+..++.       +++|+.|+|+++.+++.+.+++...+
T Consensus       355 ~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~-------~~~g~~Gvw~a~~~~~~~~~i~~~~~  427 (441)
T PRK10367        355 IWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL-------PWLGNHGLWLALTVFLALRGLSLAAI  427 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH-------HHcCchHHHHHHHHHHHHHHHHHHHH
Confidence            999876443334444444455555   59999999999977522222       24699999999999999999987766


Q ss_pred             HhhcchHH
Q 029607          159 TVRTNWNA  166 (190)
Q Consensus       159 ~~~~~~~~  166 (190)
                      +++ +|++
T Consensus       428 ~~~-~~~~  434 (441)
T PRK10367        428 WRR-HWRN  434 (441)
T ss_pred             HHH-HHhc
Confidence            554 4744

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.89  E-value=2.5e-21  Score=162.11  Aligned_cols=160  Identities=16%  Similarity=0.096  Sum_probs=147.1

Q ss_pred             chhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHH
Q 029607            3 YLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTP   82 (190)
Q Consensus         3 i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~   82 (190)
                      +..+.+.+..|++.+.++.+||++|+||+|++++..++++..++.++++++.+.+.+++++.++|+.|||+.+.+.+|++
T Consensus        56 ~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~  135 (456)
T PRK01766         56 IWLPVILFGHGLLLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLH  135 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHH
Confidence            34556678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHh----cCCCchhHHHHHHHHHHHHHHHHHHH
Q 029607           83 LLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK----TNIGVVGIWWGMITGVLLQTITLNIL  158 (190)
Q Consensus        83 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~~~~  158 (190)
                      +..++.++.....++++++||.||++.+++.++++ .++++++++++.+.    +++|+.|+++++.+++.+..+...++
T Consensus       136 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~-~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~  214 (456)
T PRK01766        136 ALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIGFLG-LLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIY  214 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH-HHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 48899999999864    36799999999999999998887777


Q ss_pred             Hhhcc
Q 029607          159 TVRTN  163 (190)
Q Consensus       159 ~~~~~  163 (190)
                      .++++
T Consensus       215 ~~~~~  219 (456)
T PRK01766        215 IKRAR  219 (456)
T ss_pred             HHhCh
Confidence            66543

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.85  E-value=1.6e-19  Score=145.42  Aligned_cols=159  Identities=18%  Similarity=0.234  Sum_probs=146.6

Q ss_pred             cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607            2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT   81 (190)
Q Consensus         2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l   81 (190)
                      ++.++...+..|++++..+.++++.|++|+|++++..+.+...+.+++++.+++.+.+++++.++|+.|||..+.+.+++
T Consensus        36 ~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l  115 (342)
T TIGR00797        36 SVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYL  115 (342)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHH
Confidence            34567778899999999999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHH-hcC-CCchhHHHHHHHHHHHHHHHHHHHH
Q 029607           82 PLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGF-KTN-IGVVGIWWGMITGVLLQTITLNILT  159 (190)
Q Consensus        82 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~-~~~-~g~~g~~~a~~i~~~~~~~~~~~~~  159 (190)
                      ++..++.++.+.+....+++|+.||++.+++.++.+ .+++++.++++.. .++ +|+.|+++++.+++.+..+...++.
T Consensus       116 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~  194 (342)
T TIGR00797       116 RILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYI  194 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998 4789999998887 567 7899999999999999888776666


Q ss_pred             hh
Q 029607          160 VR  161 (190)
Q Consensus       160 ~~  161 (190)
                      ++
T Consensus       195 ~~  196 (342)
T TIGR00797       195 KK  196 (342)
T ss_pred             Hh
Confidence            54

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.83  E-value=6.8e-21  Score=138.02  Aligned_cols=127  Identities=24%  Similarity=0.414  Sum_probs=122.7

Q ss_pred             cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607            2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT   81 (190)
Q Consensus         2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l   81 (190)
                      ++..+...+..|++.|.++++||++|++|+||+++..+.++.++.+++++++++...+++++..+|++|+|+.+.+.+|+
T Consensus        36 ~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~  115 (162)
T PF01554_consen   36 SIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYL  115 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHH
T ss_pred             HHHHHHhhhcccccccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccc
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHH
Q 029607           82 PLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYV  128 (190)
Q Consensus        82 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~  128 (190)
                      ++..++.++.+......+++||.||++.+++.++.+.|++++|++|+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl  162 (162)
T PF01554_consen  116 RIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLAYL  162 (162)
T ss_dssp             CCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence            99999999999999999999999999999999999988999999985

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.76  E-value=1.1e-16  Score=135.26  Aligned_cols=150  Identities=12%  Similarity=0.115  Sum_probs=137.8

Q ss_pred             hhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCC----cHHHHHHHHhHHHHHH
Q 029607           10 AKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTS----NSEVVQAVSDLTPLLA   85 (190)
Q Consensus        10 ~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~v~~~~~~~l~i~~   85 (190)
                      +..+++.+..|.+|+++|+||+||+++..+++......++++.+..+..+++++.++|.+    |+|..+.+..++++++
T Consensus       275 ~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~  354 (502)
T TIGR01695       275 FGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYG  354 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999999875    6788888999999999


Q ss_pred             HHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 029607           86 ISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRT  162 (190)
Q Consensus        86 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~  162 (190)
                      +..++.+.+.++.+.+++.||++.+++.++.+ .++++|+++++...  +|..|+|+++.+++.+..++..++.+|+
T Consensus       355 ~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~  428 (502)
T TIGR01695       355 LGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR  428 (502)
T ss_pred             HHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999998 57899999988754  5899999999999999988877766654

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.76  E-value=4.3e-19  Score=148.48  Aligned_cols=177  Identities=42%  Similarity=0.681  Sum_probs=166.4

Q ss_pred             cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607            2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT   81 (190)
Q Consensus         2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l   81 (190)
                      ++....++++.|++.|+++++++.+|+||++++|.....+...++.++...+...+..++++..+|++|+|+.+...+..
T Consensus       292 ~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~  371 (473)
T KOG1347|consen  292 EIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLT  371 (473)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607           82 PLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR  161 (190)
Q Consensus        82 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~  161 (190)
                      ++++.+.++++.+.+..|..+|.|.++...++++..++++++|+..++.+..++|..|+|.++..+..+..........+
T Consensus       372 pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~  451 (473)
T KOG1347|consen  372 PLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTAR  451 (473)
T ss_pred             HHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheee
Confidence            99999999999999999999999999999999999999999999999999899999999999999977777777777888


Q ss_pred             cchHHHHHHHHHHhhhH
Q 029607          162 TNWNAEVTSWFYELCYV  178 (190)
Q Consensus       162 ~~~~~~~~~~~~~~~~~  178 (190)
                      .+|++..++.+++....
T Consensus       452 tdW~~~~~~a~~~~~~~  468 (473)
T KOG1347|consen  452 TDWKNQAEKAFARIIAS  468 (473)
T ss_pred             ccHHHHHHHHHHHHHhh
Confidence            99999998887765443

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.73  E-value=4.8e-16  Score=130.90  Aligned_cols=151  Identities=17%  Similarity=0.166  Sum_probs=136.6

Q ss_pred             HHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHH
Q 029607            6 WDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLA   85 (190)
Q Consensus         6 ~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~   85 (190)
                      +...+..+++.+..|.++++.|+||+|++++..++++..+..++++.+..+..+++++..+|.++++    +..++++.+
T Consensus       283 ~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~  358 (488)
T TIGR02900       283 FPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLA  358 (488)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHH
Confidence            3344567889999999999999999999999999999999999999999999999999999987666    678899999


Q ss_pred             HHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607           86 ISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR  161 (190)
Q Consensus        86 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~  161 (190)
                      +..++...+....+++++.||+|.+++.++.+ .++++++++.+...+.+|+.|+|+++.+++.+..++..+..+|
T Consensus       359 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~  433 (488)
T TIGR02900       359 PSFPFLYFSAPLQSILQGLGKQKVALRNSLIG-AIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK  433 (488)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH-HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999 5889999998876567899999999999999998888777765

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PRK15099 O-antigen translocase; Provisional

Probab=99.54  E-value=3.5e-13  Score=111.76  Aligned_cols=142  Identities=15%  Similarity=0.141  Sum_probs=117.1

Q ss_pred             hhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHHH
Q 029607           11 KLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFL   90 (190)
Q Consensus        11 ~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~   90 (190)
                      ..|++.+.+..++|+  ++|+|++++..+.++..+...+++++.+.+.+.+++..++.+|||    ...++.+..+..++
T Consensus        55 ~~G~~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~  128 (416)
T PRK15099         55 GAGIFNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD----YQGVVRAVALIQMG  128 (416)
T ss_pred             cCCccceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh----HHHHHHHHHHHHHH
Confidence            566667778889988  788999999999999999999999999999999999998888776    34566677777777


Q ss_pred             HhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607           91 NGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR  161 (190)
Q Consensus        91 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~  161 (190)
                      ........+.+||.||++.++..++.+. ++++.+ +++.+.. .|+.|+.+++.+++.+..+...+++.+
T Consensus       129 ~~~~~~~~~~lr~~~~~~~~~~~~~~~~-~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~  196 (416)
T PRK15099        129 IAWANLLLAILKGFRDAAGNALSLIVGS-LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIR  196 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888899999999999999999999984 677666 4444333 399999999999999887766655544

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.51  E-value=1.7e-12  Score=109.31  Aligned_cols=146  Identities=16%  Similarity=0.166  Sum_probs=120.5

Q ss_pred             hHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHHHH
Q 029607           12 LGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLN   91 (190)
Q Consensus        12 ~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~   91 (190)
                      .|++.+....+|++.|++|+|++++..+++...++..+++.+.+.+.+.+++.+.+.+|++.    ..++++..+..++.
T Consensus        54 ~Gl~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~  129 (488)
T TIGR02900        54 GGLPVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFI  129 (488)
T ss_pred             CCcHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999998887777763    35678888999999


Q ss_pred             hHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHh-----cCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 029607           92 GIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK-----TNIGVVGIWWGMITGVLLQTITLNILTVRT  162 (190)
Q Consensus        92 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~-----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~  162 (190)
                      .+....++++||.+|.+..+..+.++. +++++....+...     .+.++.|..+++.++..+..+....+++++
T Consensus       130 ~~~~~~~~~l~~~~~~~~~~~~~~i~~-i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~  204 (488)
T TIGR02900       130 ALSSVLKGYFQGISNMKPPAYIQVIEQ-IVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRK  204 (488)
T ss_pred             HHHHHHHHHHhhhccchHhHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999884 5666554444332     234566777888888888777765555443

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.50  E-value=7.1e-12  Score=105.14  Aligned_cols=150  Identities=13%  Similarity=0.125  Sum_probs=136.1

Q ss_pred             hhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCC----cHHHHHHHHhHHHHHH
Q 029607           10 AKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTS----NSEVVQAVSDLTPLLA   85 (190)
Q Consensus        10 ~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~v~~~~~~~l~i~~   85 (190)
                      +..++++..-|..++...+||.++.++..++++.....+.++.++.+..+++++.++..+    |+|-.+.....+++++
T Consensus       250 ~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~  329 (451)
T PF03023_consen  250 FAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYA  329 (451)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence            455777888899999999999999999999999999999999999999999999887752    7777888999999999


Q ss_pred             HHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 029607           86 ISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRT  162 (190)
Q Consensus        86 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~  162 (190)
                      ++.++.+.+.++...+.+.||+|.|++.+..+ .++++.+++++...  +|..|+.+++.++.++..++.+.+++|+
T Consensus       330 ~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~  403 (451)
T PF03023_consen  330 LGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRR  403 (451)
T ss_pred             HHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999 68999999777765  5999999999999999998887777665

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>TIGR01695 mviN integral membrane protein MviN

Probab=99.38  E-value=6.2e-11  Score=100.33  Aligned_cols=138  Identities=14%  Similarity=0.101  Sum_probs=107.8

Q ss_pred             HHHHHhcCCCh-HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHhhccC--CcHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 029607           21 RVSNELGAAHP-RVAKFSVFVVNANSVFIS-VVFSAIVLIFRADLSKLFT--SNSEVVQAVSDLTPLLAISAFLNGIQPI   96 (190)
Q Consensus        21 ~is~~~G~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~lf~--~~~~v~~~~~~~l~i~~~~~~~~~~~~~   96 (190)
                      .+++..|+++. |++++....+.......+ ++...+.+.+++++.+++.  .|+|..+.+.+|+++..++.++..+..+
T Consensus        63 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~  142 (502)
T TIGR01695        63 FVPVFTKAKKKEKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAV  142 (502)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444 688887777766665444 4457788889999999883  4788889999999999999999999999


Q ss_pred             HHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHH--HHHHHHHHHHHHHHHHHHhh
Q 029607           97 LSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIW--WGMITGVLLQTITLNILTVR  161 (190)
Q Consensus        97 ~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~--~a~~i~~~~~~~~~~~~~~~  161 (190)
                      .++++|+.||.+.+++.+++.+ +..+..  ......++|..|+.  +++.++..+..+..+.++++
T Consensus       143 ~~~~l~~~~~~~~~~~~~i~~~-i~~i~~--~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~  206 (502)
T TIGR01695       143 FGGILNARKRFFIPSFSPILFN-IGVILS--LLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRK  206 (502)
T ss_pred             HHHHHhccCeeHHHHHHHHHHH-HHHHHH--HHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999986 444443  23334578999988  99999999888777665554

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.37  E-value=1.5e-10  Score=97.58  Aligned_cols=150  Identities=11%  Similarity=0.058  Sum_probs=132.0

Q ss_pred             hhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCC----cHHHHHHHHhHHHHHH
Q 029607           10 AKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTS----NSEVVQAVSDLTPLLA   85 (190)
Q Consensus        10 ~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~v~~~~~~~l~i~~   85 (190)
                      +..++++..-|..|++..++|.++.++..++++..+.+++++.+..+.++++|+.++..+    +++-.+.+.+.+..++
T Consensus       284 fgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~  363 (518)
T COG0728         284 FGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYS  363 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence            456777788899999999999999999999999999999999999999999999877743    5666778899999999


Q ss_pred             HHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 029607           86 ISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRT  162 (190)
Q Consensus        86 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~  162 (190)
                      .+.++.+..-++...+++.+|+|.|+++++++ .++++.+++.+..  .+|..|+..++.++.++...+.++..+|+
T Consensus       364 ~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~  437 (518)
T COG0728         364 LGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKR  437 (518)
T ss_pred             HhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999 6899999955554  45788899999998888887776666553

>PRK15099 O-antigen translocase; Provisional

Probab=99.30  E-value=3.9e-10  Score=93.60  Aligned_cols=145  Identities=11%  Similarity=-0.047  Sum_probs=120.8

Q ss_pred             HHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcH--HHHHHHHhHHHH
Q 029607            6 WDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNS--EVVQAVSDLTPL   83 (190)
Q Consensus         6 ~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~--~v~~~~~~~l~i   83 (190)
                      +...+..+++++..|.++++   +|+||.++..++.......++++.++..+.+++++.++|.+|+  +    +.+++++
T Consensus       264 ~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~----~~~~~~~  336 (416)
T PRK15099        264 YLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTA----MRDLFAW  336 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH----HHHHHHH
Confidence            44788899999999999995   6789999999999999999999999999999999999998755  3    5667788


Q ss_pred             HHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 029607           84 LAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTV  160 (190)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~  160 (190)
                      ..+..++...+......+-+.++++......+.. .++++|+++++...  +|..|+++++++++.+...+......
T Consensus       337 l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~  410 (416)
T PRK15099        337 QLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFL  410 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777666666666777777777777766 68899999988765  49999999999999999987765554

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.27  E-value=2.6e-10  Score=95.93  Aligned_cols=154  Identities=12%  Similarity=0.163  Sum_probs=142.4

Q ss_pred             HHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHH
Q 029607            7 DINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAI   86 (190)
Q Consensus         7 ~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~   86 (190)
                      .+.+..|++.+..++.+|++|+++++.......++...-...+++.. .++.+.+++...+++|||+.+.+..|.+...+
T Consensus        77 ~~s~~~gl~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~-~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip  155 (473)
T KOG1347|consen   77 GVSILLGLQLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPIS-LLILNSEPILLLLGQDPDISRDAGSYAFMLIP  155 (473)
T ss_pred             chHHhhccchhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHH-HHHHccHHHHHHhCCChhHHHHHhhhHhhhcc
Confidence            46678899999999999999999999999999999999888888755 66777799999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 029607           87 SAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRT  162 (190)
Q Consensus        87 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~  162 (190)
                      ..+.+.....+..++|+.++.....+..... .+++++++|++.+..++|..|...+..++++........+....
T Consensus       156 ~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~  230 (473)
T KOG1347|consen  156 GLFSYAVSFPLAKFLQAQSITLPLLVIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS  230 (473)
T ss_pred             hhhhhHHHHHHHHHHHhccCchHHHHHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence            9999999999999999999999999999999 69999999999999999999999999999999998877776543

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.19  E-value=6e-09  Score=87.57  Aligned_cols=147  Identities=18%  Similarity=0.231  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCC--cHHHHHHHHhHHHHHHHHHHH
Q 029607           13 GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTS--NSEVVQAVSDLTPLLAISAFL   90 (190)
Q Consensus        13 gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--~~~v~~~~~~~l~i~~~~~~~   90 (190)
                      ++..+..|.-.+.. ++++|+.++..+..+....++++.++++.+++++++.+++.+  |+|..+.+.+.+++..+..++
T Consensus        32 al~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~  110 (451)
T PF03023_consen   32 ALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILF  110 (451)
T ss_pred             HHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            57788889999998 899999999999999999999999999999999999999954  899999999999999999999


Q ss_pred             HhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCC---chhHHHHHHHHHHHHHHHHHHHHhhcc
Q 029607           91 NGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIG---VVGIWWGMITGVLLQTITLNILTVRTN  163 (190)
Q Consensus        91 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g---~~g~~~a~~i~~~~~~~~~~~~~~~~~  163 (190)
                      .+...++.+++|+.+|...|....+..+ +..+....+..  ...|   +.++.+|..++..+..+..+...+|..
T Consensus       111 ~~l~~i~~a~L~~~~~F~~~~~~~l~~N-~~~I~~~~~~~--~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~  183 (451)
T PF03023_consen  111 IGLSSIFSAILNAHRRFLIPALSPLLFN-LSIILSLLLLS--NSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFG  183 (451)
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHH-HHHHHHHHHHH--HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999999999999999999999988875 33333333332  2345   888999999999999888887777643

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PRK10459 colanic acid exporter; Provisional

Probab=99.09  E-value=3.4e-08  Score=83.61  Aligned_cols=141  Identities=12%  Similarity=0.177  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHHHHhH
Q 029607           14 LSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGI   93 (190)
Q Consensus        14 l~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~   93 (190)
                      ++...-|..++.  ++|.++.++..++.......++++++..+..+++++..++.+|+  .+.+...++++++...+...
T Consensus       264 i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~  339 (492)
T PRK10459        264 ITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSV  339 (492)
T ss_pred             HHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHH
Confidence            445556777775  67889999999999999999999999999999999987775543  24477899999999999999


Q ss_pred             HHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607           94 QPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR  161 (190)
Q Consensus        94 ~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~  161 (190)
                      .......+++.||+|.+++.+++. .++.+|..+.+..  .+|+.|+.+++.+++.+......++..|
T Consensus       340 ~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~  404 (492)
T PRK10459        340 GNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK  404 (492)
T ss_pred             HHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888 4777887766654  4599999999999999887777766633

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.06  E-value=4.1e-08  Score=82.82  Aligned_cols=137  Identities=12%  Similarity=0.122  Sum_probs=120.4

Q ss_pred             chhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHH
Q 029607            3 YLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTP   82 (190)
Q Consensus         3 i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~   82 (190)
                      +......+..+++...-|.+++...++|.++.++..+++......++++..+....+++++..++..++...  +...+.
T Consensus       258 i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~--~~~~l~  335 (480)
T COG2244         258 LVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYAS--AAPILQ  335 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccc--hhHHHH
Confidence            345566778899999999999999999999999999999999999999999999999999988776644322  788899


Q ss_pred             HHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHH
Q 029607           83 LLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGM  144 (190)
Q Consensus        83 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~  144 (190)
                      ++++..++..........+++.|+++..++.+.++ .+.++.+++++....  |..|...++
T Consensus       336 il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~li~~~--g~~g~~~a~  394 (480)
T COG2244         336 LLALAGLFLSLVSLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLLIPRF--GLIGAAIAT  394 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHHHHhh--hhhhHHHHH
Confidence            99999999999999999999999999999999999 588888888887644  778888887

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.02  E-value=2.8e-09  Score=85.86  Aligned_cols=83  Identities=27%  Similarity=0.393  Sum_probs=77.8

Q ss_pred             cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607            2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT   81 (190)
Q Consensus         2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l   81 (190)
                      ++.++...++.+++.+..|.+++++|+||.|++++..++++.....++++.+..+.++++++.++|++|||+.+.+..++
T Consensus       259 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~  338 (342)
T TIGR00797       259 NVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYL  338 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            34567788899999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHH
Q 029607           82 PLL   84 (190)
Q Consensus        82 ~i~   84 (190)
                      ++.
T Consensus       339 ~~~  341 (342)
T TIGR00797       339 IFV  341 (342)
T ss_pred             HHh
Confidence            764

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=98.45  E-value=4.9e-06  Score=58.92  Aligned_cols=79  Identities=14%  Similarity=0.167  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 029607           81 TPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTV  160 (190)
Q Consensus        81 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~  160 (190)
                      ++++++..++.+.+......+++.||++..++.+..+ .+++++.++.+..  ++|..|+.+++.+++........+..+
T Consensus         2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~   78 (146)
T PF14667_consen    2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVR   78 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999999999 6999999999954  569999999999999999888877776


Q ss_pred             hc
Q 029607          161 RT  162 (190)
Q Consensus       161 ~~  162 (190)
                      |.
T Consensus        79 k~   80 (146)
T PF14667_consen   79 KK   80 (146)
T ss_pred             HH
Confidence            64

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=98.29  E-value=7.3e-05  Score=63.56  Aligned_cols=149  Identities=14%  Similarity=0.149  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh-hccCC--cHHHHHHHHhHHHHHHHHHH
Q 029607           13 GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLS-KLFTS--NSEVVQAVSDLTPLLAISAF   89 (190)
Q Consensus        13 gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~lf~~--~~~v~~~~~~~l~i~~~~~~   89 (190)
                      +++++..|.-.++..++..|++++..+........+.+.+.++..++++++. .++..  |++....+....++..++.+
T Consensus        65 afs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~  144 (518)
T COG0728          65 AFSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLL  144 (518)
T ss_pred             hHhhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Confidence            4678888999999988878888888888886777788888888899999988 55544  34544478889999999999


Q ss_pred             HHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 029607           90 LNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRT  162 (190)
Q Consensus        90 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~  162 (190)
                      +.++.....+++++.++...|...-+.-+ +.-+.....+....+....+..++..++-.+..+..+..++|.
T Consensus       145 ~isL~al~~aiLNs~~~F~~~a~aPvl~N-v~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~  216 (518)
T COG0728         145 FISLSALFGAILNSRNRFFIPAFAPVLLN-VSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKA  216 (518)
T ss_pred             HHHHHHHHHHHHhccCeechhhhhHHHHH-HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999888875 3333233333333332355778888899988888888887764

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=98.12  E-value=0.0016  Score=49.70  Aligned_cols=131  Identities=14%  Similarity=0.199  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHHHHhHHH
Q 029607           16 AAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQP   95 (190)
Q Consensus        16 ~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~   95 (190)
                      .|....+.+. .++++++.++..+.......+.+++...+......    ++ ++++    ...++....+..++.....
T Consensus        39 ~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~  108 (251)
T PF13440_consen   39 LGLRQSLVRS-AARDKQDIRSLLRFSLLVSLLLAVILAILAILIAY----FF-GDPE----LFWLLLLLALAIFFSALSQ  108 (251)
T ss_pred             HHHHHHHHHh-hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh-CChh----HHHHHHHHHHHHHHHHHHH
Confidence            3344444443 34667777777777776666666554443333222    33 5555    4456677778888899999


Q ss_pred             HHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 029607           96 ILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNIL  158 (190)
Q Consensus        96 ~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~  158 (190)
                      ...+.+++.+|.+.....+.... +........+. ..+.+..+..++..++..+..+.....
T Consensus       109 ~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (251)
T PF13440_consen  109 LFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLL-YLGLNLWSILLAFIISALLALLISFYL  169 (251)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998885 44433333333 333488889999888888776655543

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=98.02  E-value=0.0012  Score=50.96  Aligned_cols=138  Identities=20%  Similarity=0.220  Sum_probs=82.2

Q ss_pred             hhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHHH
Q 029607           11 KLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFL   90 (190)
Q Consensus        11 ~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~   90 (190)
                      ..|++.+....++++..+  .++.++..........+.+++.........     .+.+ ++..   ..+........++
T Consensus        53 ~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~-~~~~---~~~~~~~~~~~~~  121 (273)
T PF01943_consen   53 DLGLSQAIVRFIAEYKDK--KELRSAYFSSVLFLLLIFSLIFLLILLIAS-----FFGN-PSLS---LILIILALLILIL  121 (273)
T ss_pred             hhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCC-chHH---HHHHHHHHHHHHH
Confidence            456666666666655432  344444444444444444433333333222     3333 3321   2222222222357


Q ss_pred             HhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607           91 NGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR  161 (190)
Q Consensus        91 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~  161 (190)
                      ........+++++.++.+.....++... +........+... +.+..+...+..++..+..+......++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (273)
T PF01943_consen  122 SSLSSVFSGLLQGLQRFKYIAISNIISS-LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR  190 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999998885 5555555444443 3358889999999998887777766654

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PRK10459 colanic acid exporter; Provisional

Probab=97.82  E-value=0.00089  Score=56.80  Aligned_cols=114  Identities=13%  Similarity=0.195  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHH
Q 029607           36 FSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNL  115 (190)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  115 (190)
                      +............++++..+.+.+.+++..+|. ||+    ....+++.++..++.++.....+.+++..|.+.....+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~  149 (492)
T PRK10459         75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI  149 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence            445566677777787777788888888887664 455    345677788888888888889999999999999888888


Q ss_pred             HHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q 029607          116 ACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLN  156 (190)
Q Consensus       116 ~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~  156 (190)
                      ... +........+.. .+.|..+..++..++..+..+...
T Consensus       150 ~~~-i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~  188 (492)
T PRK10459        150 SAV-VAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFG  188 (492)
T ss_pred             HHH-HHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHH
Confidence            874 455555544443 467899999999988887766543

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=97.59  E-value=0.0023  Score=55.29  Aligned_cols=125  Identities=14%  Similarity=0.102  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCC----cHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhccCcc
Q 029607           32 RVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTS----NSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQ  107 (190)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~  107 (190)
                      +++.+.+...+.....++++...+.....+.+.++...    |++    +.+.++.++...|+.++|-++.+++++..++
T Consensus       339 ~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~----~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~  414 (549)
T PF04506_consen  339 KQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTS----APSLLRAYCYYIPFLAINGITEAFVFSVASE  414 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCC----chHHHHHHHHHHHHHHHccHHHHHHHHhCCH
Confidence            55777788888888888887777777777777777753    455    6888999999999999999999999999998


Q ss_pred             hHHHHHHHHH--HHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607          108 AIVAYVNLAC--YYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR  161 (190)
Q Consensus       108 ~~~~~~~~~~--~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~  161 (190)
                      +-....+-..  ..++.+..+|++... ++|..|.-+|..+.+.++.+....++++
T Consensus       415 ~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~  469 (549)
T PF04506_consen  415 SQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR  469 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766555332  235566678888876 7899999999999999998887777654

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=97.17  E-value=0.025  Score=47.75  Aligned_cols=95  Identities=15%  Similarity=0.210  Sum_probs=70.3

Q ss_pred             hhHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHH
Q 029607           11 KLGLSAAASVRVSNELGAAHPRVAKFS-VFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAF   89 (190)
Q Consensus        11 ~~gl~~a~~~~is~~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~   89 (190)
                      ..|+..+....++++..+++++..+.. ...+.......+.+...........       |++    ....+.......+
T Consensus        60 ~~G~~~ai~r~ia~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~  128 (480)
T COG2244          60 DFGLPAAITREIAEYREKGEYLLLILLSVLLLLLLALILLLLLLLIAYLLAPI-------DPV----LALLLRILSLALL  128 (480)
T ss_pred             HcCCcHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------Chh----hHHHHHHHHHHHH
Confidence            378888888889988877777777776 6666666665555544444333333       444    5667788889999


Q ss_pred             HHhHHHHHHHHHhccCcchHHHHHHHH
Q 029607           90 LNGIQPILSGVAIGSGWQAIVAYVNLA  116 (190)
Q Consensus        90 ~~~~~~~~~~~l~~~g~~~~~~~~~~~  116 (190)
                      .........+.+|+.++.+........
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (480)
T COG2244         129 LLPLSSVLRGLFQGFGRFGPLALSIVS  155 (480)
T ss_pred             HHHHHHHHHHHHHHHhhcccchhHHHH
Confidence            999999999999999999999998433

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.87  E-value=0.019  Score=47.98  Aligned_cols=146  Identities=14%  Similarity=0.093  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHH
Q 029607           13 GLSAAASVRVSNELGAAHPRVAKFSVFV---VNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAF   89 (190)
Q Consensus        13 gl~~a~~~~is~~~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~   89 (190)
                      -+-...-..-+|-+-.++.|+.|+....   .+.....+|+....+...-++.+..+++.+.=...-....+++++.+.+
T Consensus       297 PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~  376 (530)
T KOG2864|consen  297 PIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIP  376 (530)
T ss_pred             hhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHH
Confidence            3444455556676666666666655544   4455555555555555555566777776432222226788999999999


Q ss_pred             HHhHHHHHHHHHhccCcchHHHHHHHH--HHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 029607           90 LNGIQPILSGVAIGSGWQAIVAYVNLA--CYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTV  160 (190)
Q Consensus        90 ~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~  160 (190)
                      +.+.|-+..++..+.++..-.-..+-+  ...+..+..+|++..+.  |..|.-.|..+.+.+.-.....+++
T Consensus       377 ~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~--~~~GlIlANiiNm~lRIlys~~fI~  447 (530)
T KOG2864|consen  377 FLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWF--GLVGLILANIINMSLRILYSLRFIR  447 (530)
T ss_pred             HHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999887665544421  12466788999999876  6799999999998887666554544

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=96.42  E-value=0.21  Score=40.07  Aligned_cols=107  Identities=14%  Similarity=0.120  Sum_probs=66.2

Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHH-hhccCCcHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 029607           22 VSNELGAAHPRVAKFSVFVVNANSVFISVV-FSAIVLIFRADL-SKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSG   99 (190)
Q Consensus        22 is~~~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i-~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~   99 (190)
                      ++-.++.++.+|-+-....+ ..+.+..++ ..+..--+++.+ -++|.-||++.+.+...+.++.+..++++.....+|
T Consensus        72 igl~~V~s~rsrr~~vl~~~-vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qG  150 (345)
T PF07260_consen   72 IGLVFVNSKRSRRKAVLCMA-VAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQG  150 (345)
T ss_pred             HHHHHhcchhhhHHHHHHHH-HHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45566666665544444433 222222222 222222333433 578888999999999999999999999999999999


Q ss_pred             HHhccCcchHHHHHHHHHHHHhHhHHHHHHH
Q 029607          100 VAIGSGWQAIVAYVNLACYYIIDLPIAYVRG  130 (190)
Q Consensus       100 ~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~  130 (190)
                      ++-=..++......++.. .+..+.....+.
T Consensus       151 ILik~r~s~iV~~aSI~~-v~~qvV~v~~ll  180 (345)
T PF07260_consen  151 ILIKHRHSWIVGSASIAD-VIAQVVLVAILL  180 (345)
T ss_pred             HhhhccceeEeehHHHHH-HHHHHHHHHHHH
Confidence            988555555555555554 333333333333

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>COG4267 Predicted membrane protein [Function unknown]

Probab=92.15  E-value=6  Score=32.84  Aligned_cols=136  Identities=15%  Similarity=0.068  Sum_probs=92.4

Q ss_pred             hhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHH
Q 029607            9 NAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISA   88 (190)
Q Consensus         9 ~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~   88 (190)
                      .+.-|++...+-.+|..+=++|++++.....-+.......+...+.++++        .++|+..     .|--......
T Consensus        75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~--------~~~~~si-----~yk~l~~~~F  141 (467)
T COG4267          75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFF--------VNNQYSI-----VYKILACALF  141 (467)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhh--------hcCchhH-----HHHHHHHHHH
Confidence            35567777777888888888888888877766666655555554432111        1223322     2222333455


Q ss_pred             HHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607           89 FLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR  161 (190)
Q Consensus        89 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~  161 (190)
                      +..+...+...++.|+.|-+......+.+ .++.+.+++++-.   .++.|..++.-++..........+..|
T Consensus       142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr  210 (467)
T COG4267         142 VGMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR  210 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            56666777888999999999999998888 4666776665554   488999999999998887776666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
3mkt_A	460	Structure Of A Cation-Bound Multidrug And Toxin Com		4e-05

>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 5/153 (3%)
Query: 1   MNYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKXXXXXXXXXXXXXXXXXXXXXLIFR 60
           +N+ +      + + AA S+RV ++LG    + A                      ++FR
Sbjct: 280 LNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFR 339
Query: 61  ADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYI 120
             ++ L+T N  VV     L    AI   ++ +Q + +G   G      + +     Y++
Sbjct: 340 EQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWV 399
Query: 121 IDLPIAYVRGF-----KTNIGVVGIWWGMITGV 148
           + LP  Y+ G      +  +G  G W G I G+
Sbjct: 400 LGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGL 432

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	3e-27

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score =  105 bits (265), Expect = 3e-27
 Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 8/158 (5%)

Query: 12  LGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNS 71
           + + AA S+RV ++LG    + A  +  V     +  + + + + ++FR  ++ L+T N 
Sbjct: 291 MSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQ 350

Query: 72  EVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGF 131
            VV     L    AI   ++ +Q + +G   G      + +     Y+++ LP  Y+ G 
Sbjct: 351 VVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGM 410

Query: 132 -----KTNIGVVGIWWGMITGVLLQTITLNILTVRTNW 164
                +  +G  G W G I G+    +   +L  R  W
Sbjct: 411 TNWLTEQPLGAKGFWLGFIIGLSAAAL---MLGQRLYW 445

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.88
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.74

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.88  E-value=1.6e-22  Score=167.09  Aligned_cols=161  Identities=22%  Similarity=0.380  Sum_probs=151.3

Q ss_pred             cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607            2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT   81 (190)
Q Consensus         2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l   81 (190)
                      ++..+..++..+++.+..|.+++++|+||+||+++..+.+...+..++++.++.+..+++++.++|++|+|+.+.+..++
T Consensus       281 ~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l  360 (460)
T 3mkt_A          281 NFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLL  360 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            46678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHh----cC-CCchhHHHHHHHHHHHHHHHHH
Q 029607           82 PLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK----TN-IGVVGIWWGMITGVLLQTITLN  156 (190)
Q Consensus        82 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~----~~-~g~~g~~~a~~i~~~~~~~~~~  156 (190)
                      ++++++.++++.+.+..++++|.||++.+++.++++.|++++|+++++...    ++ +|+.|+|+++.+++.+..++..
T Consensus       361 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~  440 (460)
T 3mkt_A          361 LFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLG  440 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999889999999999987    66 8999999999999999888776


Q ss_pred             HHHhhc
Q 029607          157 ILTVRT  162 (190)
Q Consensus       157 ~~~~~~  162 (190)
                      ++++|.
T Consensus       441 ~~~~~~  446 (460)
T 3mkt_A          441 QRLYWL  446 (460)
T ss_dssp             SSSSSS
T ss_pred             HHHHHH
Confidence            655543

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.74  E-value=2e-18  Score=142.45  Aligned_cols=157  Identities=13%  Similarity=0.112  Sum_probs=143.0

Q ss_pred             hhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHH
Q 029607            4 LNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPL   83 (190)
Q Consensus         4 ~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i   83 (190)
                      ..+...+..|++.+..+.+++++|++|+|++++..+.++....+++++.+++ +.+.+++..+++.|+|+.+.+..|+++
T Consensus        57 ~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i  135 (460)
T 3mkt_A           57 WLPSILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHA  135 (460)
T ss_dssp             HHHHHHHHHHHHHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            4455667889999999999999999999999999999999999999997765 788999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHh----cCCCchhHHHHHHHHHHHHHHHHHHHH
Q 029607           84 LAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK----TNIGVVGIWWGMITGVLLQTITLNILT  159 (190)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~  159 (190)
                      ..++.++........+++||.||++.++..++++ .++++++++++.+.    +++|+.|+.+++.+++.+..++..+++
T Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~  214 (460)
T 3mkt_A          136 VIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIG-LLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYI  214 (460)
T ss_dssp             GGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHH-HHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH-HHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999 58899999999976    378999999999999999988877766


Q ss_pred             hhc
Q 029607          160 VRT  162 (190)
Q Consensus       160 ~~~  162 (190)
                      +++
T Consensus       215 ~~~  217 (460)
T 3mkt_A          215 VTS  217 (460)
T ss_dssp             HTC
T ss_pred             HhC
Confidence            553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00