Citrus Sinensis ID: 029613

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKISATTRNKY
Secondary Structure (PSIPRED)
cccccccccEEEccccccHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccccEEEEEEcccHHHHHHcccHHHHHHHHccccccccccccccccccccccccccccccHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEcHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccccEEEEEEEccHHHHHccccccHHHHHHcccccccEcccccccccccccEEEEEcccccccccc
Coil and Loop (DISEMBL)
matvgnstnifwqespigrlERQKLLNQKGCVVWitglsgsgkstLAFSVNkelysrgklsyildgdnlrhglnknlgfsaedrTENIRRVGEVAKLFADAGLICIASLispyrkdrdacramlpdsnfiEVFMNMplelceardpkgLYKLARAGKIKGLLSIFSFcyyekliprtCKKKISATTRNKY
Flexible Loop (DISEMBL)
matvgnstnifwqespigRLERQKLLNQKGCVVWItglsgsgkstLAFSVNKELYSRGKLSYILDGDNLRHGLNKNlgfsaedrteNIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFcyyekliprtckkkisattrnky
Low Complexity Region (SEG)
MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKISATTRNKY
Disordered region (IsUnstruct)
********NIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCK***********
Disordered Region (DISOPRED)
*****NS**IFWQESPIGRL*****LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKIS*******
Disordered Region (DISEMBL)
MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKK*********
Disordered Region (DISPRO)
*********IFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKIS*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKISATTRNKY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
Q43295	276	Adenylyl-sulfate kinase 1	no	no	0.863	0.594	0.731	5e-71
O49204	312	Adenylyl-sulfate kinase,	N/A	no	0.852	0.519	0.716	3e-67
O49196	293	Adenylyl-sulfate kinase 2	no	no	0.831	0.539	0.727	4e-67
Q97MT8	200	Adenylyl-sulfate kinase O	yes	no	0.836	0.795	0.6	2e-52
Q8EQN3	199	Adenylyl-sulfate kinase O	yes	no	0.889	0.849	0.570	4e-52
Q9KCT0	202	Probable adenylyl-sulfate	yes	no	0.889	0.836	0.570	1e-51
Q88X60	207	Adenylyl-sulfate kinase O	yes	no	0.947	0.869	0.540	5e-51
Q4L9E6	199	Adenylyl-sulfate kinase O	yes	no	0.847	0.809	0.565	5e-50
Q8CR04	199	Adenylyl-sulfate kinase O	yes	no	0.847	0.809	0.546	6e-50
Q5HL02	199	Adenylyl-sulfate kinase O	yes	no	0.847	0.809	0.546	6e-50

>sp|Q43295|KAP1_ARATH Adenylyl-sulfate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=AKN1 PE=1 SV=1

 Score =  266 bits (681), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 120/164 (73%), Positives = 146/164 (89%)

Query: 1   MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL 60
           ++TVGNSTNI W E  + +++RQ+LL+QKGCV+W+TGLSGSGKSTLA ++N+ LY +GKL
Sbjct: 72  LSTVGNSTNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKL 131

Query: 61  SYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC 120
            YILDGDN+RHGLN++L F AEDR ENIRRVGEVAKLFADAG+ICIASLISPYR DRDAC
Sbjct: 132 CYILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDAC 191

Query: 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
           R++LP+ +F+EVFM++PL +CEARDPKGLYKLARAGKIKG   I
Sbjct: 192 RSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGI 235

Catalyzes the synthesis of activated sulfate.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 2EC: 5

>sp|O49204|KAPS_CATRO Adenylyl-sulfate kinase, chloroplastic OS=Catharanthus roseus GN=AKN PE=2 SV=1

 Score =  254 bits (648), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 116/162 (71%), Positives = 142/162 (87%)

Query: 3   TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSY 62
           TVGNSTNI W +  + + ERQ+ L Q+GCV+WITGLSGSGKSTLA ++++ L+++GKL+Y
Sbjct: 108 TVGNSTNILWHKCAVEKSERQEPLQQRGCVIWITGLSGSGKSTLACALSRGLHAKGKLTY 167

Query: 63  ILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRA 122
           ILDGDN+RHGLN +L F AEDR ENIRR+GEVAKLFADAG+ICIASLISPYRK  DACR+
Sbjct: 168 ILDGDNVRHGLNSDLSFKAEDRAENIRRIGEVAKLFADAGVICIASLISPYRKPPDACRS 227

Query: 123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
           +LP+ +FIEVFM++PL++CEARDPKGLYKLARAGKIKG   I
Sbjct: 228 LLPEGDFIEVFMDVPLKVCEARDPKGLYKLARAGKIKGFTGI 269

Catalyzes the synthesis of activated sulfate.

Catharanthus roseus (taxid: 4058)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|O49196|KAP2_ARATH Adenylyl-sulfate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=AKN2 PE=2 SV=1

 Score =  253 bits (647), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 115/158 (72%), Positives = 138/158 (87%)

Query: 7   STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG 66
           + NI W ES I R +RQ+LL QKGCVVWITGLSGSGKST+A +++K L+ RGKL+Y LDG
Sbjct: 92  AENIVWHESSICRCDRQQLLQQKGCVVWITGLSGSGKSTVACALSKALFERGKLTYTLDG 151

Query: 67  DNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPD 126
           DN+RHGLN++L F AE RTENIRR+GEVAKLFAD G+ICIASLISPYR+DRDACR++LPD
Sbjct: 152 DNVRHGLNRDLTFKAEHRTENIRRIGEVAKLFADVGVICIASLISPYRRDRDACRSLLPD 211

Query: 127 SNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
            +F+EVFM++PL +CE+RDPKGLYKLARAGKIKG   I
Sbjct: 212 GDFVEVFMDVPLHVCESRDPKGLYKLARAGKIKGFTGI 249

Catalyzes the synthesis of activated sulfate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q97MT8|CYSC_CLOAB Adenylyl-sulfate kinase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=cysC PE=3 SV=1

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 96/160 (60%), Positives = 125/160 (78%), Gaps = 1/160 (0%)

Query: 7   STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG 66
           STN+ WQE+ I R  R+K+L QKG V+W TGLSGSGKST+A ++ K+LY  G L+Y+LDG
Sbjct: 6   STNVVWQETKIKRQNREKMLKQKGAVLWFTGLSGSGKSTVASALEKKLYEMGYLTYLLDG 65

Query: 67  DNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPD 126
           DNLR+GLN +LGF +EDRTENIRRV EVAKLFADAG+I I + ISP+ +DR+  R +L  
Sbjct: 66  DNLRYGLNSDLGFKSEDRTENIRRVSEVAKLFADAGIITITTFISPFIEDRNNARKLL-G 124

Query: 127 SNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFS 166
            +F+EV+++ P+E+CE RDPKG+YK AR G+IK    I S
Sbjct: 125 KDFVEVYIDCPIEVCEKRDPKGIYKKARNGEIKNFTGIDS 164

Catalyzes the synthesis of activated sulfate.

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q8EQN3|CYSC_OCEIH Adenylyl-sulfate kinase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=cysC PE=3 SV=1

 Score =  204 bits (518), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 97/170 (57%), Positives = 122/170 (71%), Gaps = 1/170 (0%)

Query: 7   STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG 66
           STNI WQ++ + + +RQ L N K  V+W TGLSGSGKSTL+ ++ KEL+S    +Y LDG
Sbjct: 4   STNIVWQKTSVKKADRQHLNNHKSAVLWFTGLSGSGKSTLSSALEKELFSLETHTYHLDG 63

Query: 67  DNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPD 126
           DN+RHGLNKNLGFS EDR ENIRR+GEV+KL  DAGLI + + ISPY++DRD  RA L  
Sbjct: 64  DNVRHGLNKNLGFSPEDREENIRRIGEVSKLMVDAGLITLTAFISPYQEDRDHVRATLAQ 123

Query: 127 SNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPR 176
             FIE+++   L++CEARDPKGLYK AR G+I     I +  Y E L P 
Sbjct: 124 DEFIEIYVKCSLDMCEARDPKGLYKKARLGEINNFTGIDA-PYEEPLHPE 172

Catalyzes the synthesis of activated sulfate.

Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) (taxid: 221109)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q9KCT0|CYSC1_BACHD Probable adenylyl-sulfate kinase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=BH1489 PE=3 SV=1

 Score =  202 bits (513), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/170 (57%), Positives = 120/170 (70%), Gaps = 1/170 (0%)

Query: 6   NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD 65
           N  +I W E+ + + ERQK    K CVVW TGLSGSGKSTLA +++++L+  G  SY+LD
Sbjct: 5   NQPHIVWHEASVSKEERQKRNRLKSCVVWFTGLSGSGKSTLANALDRKLFEEGIHSYVLD 64

Query: 66  GDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLP 125
           GDN+RHGLN  LGFS EDR ENIRR+GEVAKLF DAG++   + ISP+R+DRD  R +L 
Sbjct: 65  GDNIRHGLNAGLGFSEEDRKENIRRIGEVAKLFVDAGVVTSTAFISPFREDRDNVRGILD 124

Query: 126 DSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIP 175
           D  FIEV++  PLE CE RDPKGLYK AR+G I     I S  Y E + P
Sbjct: 125 DGEFIEVYVRCPLETCEKRDPKGLYKKARSGDIPEFTGI-SSPYEEPVNP 173

Catalyzes the synthesis of activated sulfate.

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q88X60|CYSC_LACPL Adenylyl-sulfate kinase OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=cysC PE=3 SV=1

 Score =  200 bits (508), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 100/185 (54%), Positives = 126/185 (68%), Gaps = 5/185 (2%)

Query: 7   STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG 66
           S NI W +S + + ERQ L + K  V+W TGLSGSGKST+A +V K L+ +   SY+LDG
Sbjct: 4   SDNITWHQSQVSKAERQALNHHKSVVLWFTGLSGSGKSTIANAVEKALFDQQVGSYVLDG 63

Query: 67  DNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPD 126
           DN+R GLNKNLGFSAEDR ENIRR+GEVAKLF DAG+I + + ISPYR DRD  RA L  
Sbjct: 64  DNMRFGLNKNLGFSAEDREENIRRIGEVAKLFVDAGVITLTAFISPYRADRDKVRANLEV 123

Query: 127 SNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPR----TCKKKI 182
             FIEVF++ PLE+CE RD K LY  AR G+I G   I +  Y   + P     T K+ +
Sbjct: 124 DEFIEVFVDTPLEVCEQRDVKQLYAKARRGEITGFTGIDA-PYEAPIDPEITIDTSKQPL 182

Query: 183 SATTR 187
           +A+ +
Sbjct: 183 TASVQ 187

Catalyzes the synthesis of activated sulfate.

Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) (taxid: 220668)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q4L9E6|CYSC_STAHJ Adenylyl-sulfate kinase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=cysC PE=3 SV=1

 Score =  196 bits (499), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 91/161 (56%), Positives = 112/161 (69%)

Query: 4   VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI 63
           +  S+NI W +S + + +RQ+    K  V+W TGLSGSGKST++  + K L+   K SY 
Sbjct: 1   MSQSSNITWHDSEVTKSDRQQQNGHKSVVIWFTGLSGSGKSTVSVELEKALFQLEKHSYR 60

Query: 64  LDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAM 123
           LDGDN+RHGLNKNLGFS EDR ENIRR+GEV+KL  DAG I I + ISPYR DRD  R +
Sbjct: 61  LDGDNVRHGLNKNLGFSPEDRKENIRRIGEVSKLLVDAGTIAITAFISPYRADRDEVREI 120

Query: 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
           L D  FIEV+    +E CE RDPKGLYK AR+G+IK    I
Sbjct: 121 LEDGEFIEVYTECSVEACEQRDPKGLYKKARSGEIKEFTGI 161

Catalyzes the synthesis of activated sulfate.

Staphylococcus haemolyticus (strain JCSC1435) (taxid: 279808)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q8CR04|CYSC_STAES Adenylyl-sulfate kinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=cysC PE=3 SV=1

 Score =  196 bits (499), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 88/161 (54%), Positives = 117/161 (72%)

Query: 4   VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI 63
           +  S +I W +S + + +RQ     K  V+W TGLSGSGKST++ ++ KEL++ GK +Y 
Sbjct: 1   MSESNHITWHDSEVTKKQRQHKNGHKSAVIWFTGLSGSGKSTVSVALEKELFNEGKQTYR 60

Query: 64  LDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAM 123
           LDGDN+RHGLNKNLGFS EDR+ENIRR+GEVAKL  DAG + + + ISPY++DR+  RA+
Sbjct: 61  LDGDNVRHGLNKNLGFSPEDRSENIRRIGEVAKLMVDAGALTVTAFISPYKEDREGVRAL 120

Query: 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
           L D+ FIEV+    +E CE RDPKGLYK AR+G+I     I
Sbjct: 121 LEDNEFIEVYTKCSVEECEKRDPKGLYKKARSGEIPEFTGI 161

Catalyzes the synthesis of activated sulfate.

Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q5HL02|CYSC_STAEQ Adenylyl-sulfate kinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=cysC PE=3 SV=1

 Score =  196 bits (499), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 88/161 (54%), Positives = 117/161 (72%)

Query: 4   VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI 63
           +  S +I W +S + + +RQ     K  V+W TGLSGSGKST++ ++ KEL++ GK +Y 
Sbjct: 1   MSESNHITWHDSEVTKKQRQHKNGHKSAVIWFTGLSGSGKSTVSVALEKELFNEGKQTYR 60

Query: 64  LDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAM 123
           LDGDN+RHGLNKNLGFS EDR+ENIRR+GEVAKL  DAG + + + ISPY++DR+  RA+
Sbjct: 61  LDGDNVRHGLNKNLGFSPEDRSENIRRIGEVAKLMVDAGALTVTAFISPYKEDREGVRAL 120

Query: 124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
           L D+ FIEV+    +E CE RDPKGLYK AR+G+I     I
Sbjct: 121 LEDNEFIEVYTKCSVEECEKRDPKGLYKKARSGEIPEFTGI 161

Catalyzes the synthesis of activated sulfate.

Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
224125866	208	predicted protein [Populus trichocarpa]	0.863	0.788	0.878	7e-82
225441611	207	PREDICTED: adenylyl-sulfate kinase 1, ch	0.863	0.792	0.871	1e-79
356571709	207	PREDICTED: adenylyl-sulfate kinase 1, ch	0.863	0.792	0.865	5e-79
356560936	207	PREDICTED: adenylyl-sulfate kinase 1, ch	0.863	0.792	0.853	9e-79
297833070	208	hypothetical protein ARALYDRAFT_896410 [	0.863	0.788	0.871	2e-78
15228666	208	adenylylsulfate kinase [Arabidopsis thal	0.863	0.788	0.865	8e-78
255645492	207	unknown [Glycine max]	0.863	0.792	0.853	2e-77
255568908	207	adenylsulfate kinase, putative [Ricinus	0.863	0.792	0.847	3e-77
388506202	207	unknown [Lotus japonicus] gi|388507030|g	0.863	0.792	0.841	3e-76
388507218	207	unknown [Medicago truncatula]	0.863	0.792	0.829	1e-75

>gi|224125866|ref|XP_002319694.1| predicted protein [Populus trichocarpa] gi|222858070|gb|EEE95617.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (789), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 144/164 (87%), Positives = 157/164 (95%)

Query: 1   MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL 60
           M+++GNS NIFWQE P+G+LERQKL+NQKGCVVWITGLSGSGKSTLAFS+N++LYSRGKL
Sbjct: 1   MSSLGNSNNIFWQECPVGKLERQKLINQKGCVVWITGLSGSGKSTLAFSLNRQLYSRGKL 60

Query: 61  SYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC 120
           SY+LDGDNLRHGLNK+LGFSAEDRTENIRRVGEVAKLFADAG+ICIASLISPYRKDRDAC
Sbjct: 61  SYVLDGDNLRHGLNKDLGFSAEDRTENIRRVGEVAKLFADAGMICIASLISPYRKDRDAC 120

Query: 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
           RAMLPDSNFIEVFMN PL LCE+RDPKGLYKLARAGKIKG   I
Sbjct: 121 RAMLPDSNFIEVFMNTPLSLCESRDPKGLYKLARAGKIKGFTGI 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441611|ref|XP_002276818.1| PREDICTED: adenylyl-sulfate kinase 1, chloroplastic [Vitis vinifera] gi|297739763|emb|CBI29945.3| unnamed protein product [Vitis vinifera]

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 143/164 (87%), Positives = 154/164 (93%)

Query: 1   MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL 60
           M+TVGNSTNIFWQE P+GR ERQKLLNQKGCV+WITGLSGSGKSTLA +V +EL+S+GKL
Sbjct: 1   MSTVGNSTNIFWQECPVGRAERQKLLNQKGCVLWITGLSGSGKSTLACTVGRELHSKGKL 60

Query: 61  SYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC 120
           SYILDGDNLRHGLN++LGF AEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC
Sbjct: 61  SYILDGDNLRHGLNRDLGFKAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC 120

Query: 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
           RAMLPD+NFIEVFMNMPL+LCE RD KGLYKLARAGKIKG   I
Sbjct: 121 RAMLPDANFIEVFMNMPLQLCEERDAKGLYKLARAGKIKGFTGI 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571709|ref|XP_003554016.1| PREDICTED: adenylyl-sulfate kinase 1, chloroplastic-like [Glycine max]

 Score =  299 bits (765), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 142/164 (86%), Positives = 153/164 (93%)

Query: 1   MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL 60
           MAT+ NSTNIFWQ+  IGR ERQKLLNQKGCVVWITGLSGSGKSTLA S+++EL+SRGKL
Sbjct: 1   MATLSNSTNIFWQDCQIGRPERQKLLNQKGCVVWITGLSGSGKSTLACSLSRELHSRGKL 60

Query: 61  SYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC 120
           SY+LDGDNLRHGLNK+LGF AEDRTENIRR GEVAKLFADAGLIC+ASLISPYR+DRD C
Sbjct: 61  SYVLDGDNLRHGLNKDLGFKAEDRTENIRRTGEVAKLFADAGLICVASLISPYRRDRDTC 120

Query: 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
           RAMLPD+NFIEVFMNMPLELCEARDPKGLYKLARAGKIKG   I
Sbjct: 121 RAMLPDANFIEVFMNMPLELCEARDPKGLYKLARAGKIKGFTGI 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560936|ref|XP_003548742.1| PREDICTED: adenylyl-sulfate kinase 1, chloroplastic-like [Glycine max]

 Score =  298 bits (762), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 140/164 (85%), Positives = 153/164 (93%)

Query: 1   MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL 60
           MAT+ NSTNIFWQ+  +GRLERQKLLNQKGCVVWITGLSGSGKSTLA S+++EL+S+GKL
Sbjct: 1   MATLSNSTNIFWQDCQVGRLERQKLLNQKGCVVWITGLSGSGKSTLACSLSRELHSKGKL 60

Query: 61  SYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC 120
           SY+LDGDNLRHGLNK+LGF AEDR ENIRR GEVAKLFADAGLIC+ASLISPYR+DRD C
Sbjct: 61  SYVLDGDNLRHGLNKDLGFKAEDRAENIRRTGEVAKLFADAGLICVASLISPYRRDRDTC 120

Query: 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
           RAMLPD+NFIEVFMNMPLELCEARDPKGLYKLARAGKIKG   I
Sbjct: 121 RAMLPDANFIEVFMNMPLELCEARDPKGLYKLARAGKIKGFTGI 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833070|ref|XP_002884417.1| hypothetical protein ARALYDRAFT_896410 [Arabidopsis lyrata subsp. lyrata] gi|297330257|gb|EFH60676.1| hypothetical protein ARALYDRAFT_896410 [Arabidopsis lyrata subsp. lyrata]

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 143/164 (87%), Positives = 153/164 (93%)

Query: 1   MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL 60
           M+TVGNSTNIFWQESPIG+ ERQKLLNQKGCVVWITGLSGSGKSTLA S+++EL +RGKL
Sbjct: 1   MSTVGNSTNIFWQESPIGKTERQKLLNQKGCVVWITGLSGSGKSTLACSLSRELNNRGKL 60

Query: 61  SYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC 120
           SYILDGDNLRHGLNK+LGF AEDR ENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC
Sbjct: 61  SYILDGDNLRHGLNKDLGFKAEDRVENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC 120

Query: 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
           R M+ DS+FIEVFMNM L+LCEARDPKGLYKLARAGKIKG   I
Sbjct: 121 REMMQDSSFIEVFMNMSLQLCEARDPKGLYKLARAGKIKGFTGI 164

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228666|ref|NP_187040.1| adenylylsulfate kinase [Arabidopsis thaliana] gi|6006852|gb|AAF00628.1|AC009540_5 putative adenylylsulfate kinase [Arabidopsis thaliana] gi|332640489|gb|AEE74010.1| adenylylsulfate kinase [Arabidopsis thaliana]

 Score =  295 bits (754), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 142/164 (86%), Positives = 153/164 (93%)

Query: 1   MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL 60
           M+TVGNSTNIFWQESPIG+ ERQKLLNQKGCVVWITGLSGSGKSTLA S+++EL +RGKL
Sbjct: 1   MSTVGNSTNIFWQESPIGKTERQKLLNQKGCVVWITGLSGSGKSTLACSLSRELNNRGKL 60

Query: 61  SYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC 120
           SYILDGDNLRHGLNK+LGF AEDR ENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC
Sbjct: 61  SYILDGDNLRHGLNKDLGFKAEDRVENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC 120

Query: 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
           R M+ +S+FIEVFMNM L+LCEARDPKGLYKLARAGKIKG   I
Sbjct: 121 REMIQNSSFIEVFMNMSLQLCEARDPKGLYKLARAGKIKGFTGI 164

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645492|gb|ACU23241.1| unknown [Glycine max]

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 140/164 (85%), Positives = 151/164 (92%)

Query: 1   MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL 60
           MAT+ NSTNIFWQ+  IGR ERQKLLNQKGCVVWITGLSGSGKSTLA S+++EL+SRGKL
Sbjct: 1   MATLSNSTNIFWQDCQIGRPERQKLLNQKGCVVWITGLSGSGKSTLACSLSRELHSRGKL 60

Query: 61  SYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC 120
           SY+LDGDNLR GLNK+LG  AEDRTENIRR GEVAKLFADAGLIC+ASLISPYR+DRD C
Sbjct: 61  SYVLDGDNLRRGLNKDLGLKAEDRTENIRRTGEVAKLFADAGLICVASLISPYRRDRDTC 120

Query: 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
           RAMLPD+NFIEVFMNMPLELCEARDPKGLYKLARAGKIKG   I
Sbjct: 121 RAMLPDANFIEVFMNMPLELCEARDPKGLYKLARAGKIKGFTGI 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568908|ref|XP_002525424.1| adenylsulfate kinase, putative [Ricinus communis] gi|223535237|gb|EEF36914.1| adenylsulfate kinase, putative [Ricinus communis]

 Score =  292 bits (748), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 139/164 (84%), Positives = 154/164 (93%)

Query: 1   MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL 60
           M+++ NS+NIFWQE P+G+ +RQKLLNQKGCVVWITGLSGSGKSTLA S+++EL+SRGKL
Sbjct: 1   MSSLANSSNIFWQECPVGKSDRQKLLNQKGCVVWITGLSGSGKSTLACSLSRELHSRGKL 60

Query: 61  SYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC 120
           SY+LDGDNLRHGLNK+LGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC
Sbjct: 61  SYVLDGDNLRHGLNKDLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC 120

Query: 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
           RAML D+NFIEVFMNMPL LCE+RD KGLYKLARAGKIKG   I
Sbjct: 121 RAMLTDANFIEVFMNMPLSLCESRDCKGLYKLARAGKIKGFTGI 164

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506202|gb|AFK41167.1| unknown [Lotus japonicus] gi|388507030|gb|AFK41581.1| unknown [Lotus japonicus]

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 138/164 (84%), Positives = 150/164 (91%)

Query: 1   MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL 60
           M+T+ N+TNIFWQE  IG  ERQKLLNQKGCVVWITGLSGSGKSTLA S+++EL+SRGKL
Sbjct: 1   MSTLSNATNIFWQECQIGNPERQKLLNQKGCVVWITGLSGSGKSTLACSLSRELHSRGKL 60

Query: 61  SYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC 120
           SY+LDGDNLRHGLNK+LGF  EDRTENIRR GEVAKLFADAGLIC+ASLISPYR+DRD C
Sbjct: 61  SYVLDGDNLRHGLNKDLGFKPEDRTENIRRTGEVAKLFADAGLICVASLISPYRRDRDVC 120

Query: 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
           RAML D+NFIEVFMNMPLELCEARDPKGLYKLARAGKIKG   I
Sbjct: 121 RAMLSDANFIEVFMNMPLELCEARDPKGLYKLARAGKIKGFTGI 164

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507218|gb|AFK41675.1| unknown [Medicago truncatula]

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 136/164 (82%), Positives = 149/164 (90%)

Query: 1   MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL 60
           M+T+ N+TNIFWQ+  +G+ ERQKLLNQKGCVVWITGLSGSGKSTLA S + EL+SRGKL
Sbjct: 1   MSTLSNATNIFWQDCQLGKPERQKLLNQKGCVVWITGLSGSGKSTLACSPSSELHSRGKL 60

Query: 61  SYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC 120
           SYILDGDNLRHGLNK+LGF  EDRTENIRR GEVAKLFADAGLIC+ASLISPYR+DRD C
Sbjct: 61  SYILDGDNLRHGLNKDLGFKPEDRTENIRRTGEVAKLFADAGLICVASLISPYRRDRDTC 120

Query: 121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
           RAMLPD+NFIEV+MNMPL LCEARDPKGLYKLARAGKIKG   I
Sbjct: 121 RAMLPDANFIEVYMNMPLSLCEARDPKGLYKLARAGKIKGFTGI 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:2079379	208	APK3 "adenosine-5'-phosphosulf	0.863	0.788	0.865	3.6e-73
TAIR|locus:2046901	276	APK "APS kinase" [Arabidopsis	0.863	0.594	0.731	5.2e-65
TAIR|locus:2140005	293	AKN2 "APS-kinase 2" [Arabidops	0.821	0.532	0.737	5.5e-61
TAIR|locus:2158626	310	APK4 "adenosine-5'-phosphosulf	0.842	0.516	0.687	5.7e-59
TIGR_CMR|CHY_2693	197	CHY_2693 "adenylylsulfate kina	0.842	0.812	0.612	2.5e-49
UNIPROTKB|Q9NDP8	618	Ci-ASAK "ATP sulfurylase/APS k	0.842	0.258	0.569	2.7e-45
UNIPROTKB|Q90XY2	613	Q90XY2 "3'-phosphoadenosine 5'	0.842	0.261	0.548	5e-44
UNIPROTKB|Q27128	610	Q27128 "Bifunctional 3'-phosph	0.831	0.259	0.530	8.1e-44
RGD|1307012	612	Papss2 "3'-phosphoadenosine 5'	0.878	0.272	0.536	1.3e-43
UNIPROTKB|F1NPR8	616	PAPSS2 "Uncharacterized protei	0.884	0.272	0.534	1.7e-43

TAIR|locus:2079379 APK3 "adenosine-5'-phosphosulfate (APS) kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
 Identities = 142/164 (86%), Positives = 153/164 (93%)

Query:     1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL 60
             M+TVGNSTNIFWQESPIG+ ERQKLLNQKGCVVWITGLSGSGKSTLA S+++EL +RGKL
Sbjct:     1 MSTVGNSTNIFWQESPIGKTERQKLLNQKGCVVWITGLSGSGKSTLACSLSRELNNRGKL 60

Query:    61 SYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC 120
             SYILDGDNLRHGLNK+LGF AEDR ENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC
Sbjct:    61 SYILDGDNLRHGLNKDLGFKAEDRVENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC 120

Query:   121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
             R M+ +S+FIEVFMNM L+LCEARDPKGLYKLARAGKIKG   I
Sbjct:   121 REMIQNSSFIEVFMNMSLQLCEARDPKGLYKLARAGKIKGFTGI 164

GO:0000103 "sulfate assimilation" evidence=IEA;ISS

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0048232 "male gamete generation" evidence=IGI

TAIR|locus:2046901 APK "APS kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 120/164 (73%), Positives = 146/164 (89%)

Query:     1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL 60
             ++TVGNSTNI W E  + +++RQ+LL+QKGCV+W+TGLSGSGKSTLA ++N+ LY +GKL
Sbjct:    72 LSTVGNSTNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKL 131

Query:    61 SYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDAC 120
              YILDGDN+RHGLN++L F AEDR ENIRRVGEVAKLFADAG+ICIASLISPYR DRDAC
Sbjct:   132 CYILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDAC 191

Query:   121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
             R++LP+ +F+EVFM++PL +CEARDPKGLYKLARAGKIKG   I
Sbjct:   192 RSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGI 235

GO:0000103 "sulfate assimilation" evidence=IEA;IGI;ISS

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009536 "plastid" evidence=TAS

GO:0016310 "phosphorylation" evidence=IDA

GO:0010439 "regulation of glucosinolate biosynthetic process" evidence=IGI

GO:0048232 "male gamete generation" evidence=IGI

TAIR|locus:2140005 AKN2 "APS-kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 115/156 (73%), Positives = 137/156 (87%)

Query:     9 NIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN 68
             NI W ES I R +RQ+LL QKGCVVWITGLSGSGKST+A +++K L+ RGKL+Y LDGDN
Sbjct:    94 NIVWHESSICRCDRQQLLQQKGCVVWITGLSGSGKSTVACALSKALFERGKLTYTLDGDN 153

Query:    69 LRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSN 128
             +RHGLN++L F AE RTENIRR+GEVAKLFAD G+ICIASLISPYR+DRDACR++LPD +
Sbjct:   154 VRHGLNRDLTFKAEHRTENIRRIGEVAKLFADVGVICIASLISPYRRDRDACRSLLPDGD 213

Query:   129 FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
             F+EVFM++PL +CE+RDPKGLYKLARAGKIKG   I
Sbjct:   214 FVEVFMDVPLHVCESRDPKGLYKLARAGKIKGFTGI 249

GO:0000103 "sulfate assimilation" evidence=IEA;IGI;ISS

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA;IGI

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009536 "plastid" evidence=TAS

GO:0016310 "phosphorylation" evidence=IGI

GO:0010439 "regulation of glucosinolate biosynthetic process" evidence=IGI

GO:0048232 "male gamete generation" evidence=IGI

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2158626 APK4 "adenosine-5'-phosphosulfate (APS) kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 110/160 (68%), Positives = 136/160 (85%)

Query:     5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL 64
             G   NI W + P+ + +RQ+L+ QKGCV+WITGLSGSGKS+LA ++++ L++RGKLSYIL
Sbjct:    84 GKQKNIVWHDCPVTKSDRQELIKQKGCVIWITGLSGSGKSSLACALSRALHNRGKLSYIL 143

Query:    65 DGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAML 124
             DGDN+RHGLN +L F A+DR ENIRRVGEVAKLFAD+G+ICIASLISPYR +R ACRA+L
Sbjct:   144 DGDNVRHGLNSDLSFEADDRAENIRRVGEVAKLFADSGIICIASLISPYRIERAACRALL 203

Query:   125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
             P  +FIEVFM++PL +CEARDPKGLYK ARAGKIKG   +
Sbjct:   204 PQGDFIEVFMDVPLHVCEARDPKGLYKRARAGKIKGFTGV 243

GO:0000103 "sulfate assimilation" evidence=IEA;ISS

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009536 "plastid" evidence=TAS

GO:0048232 "male gamete generation" evidence=IGI

TIGR_CMR|CHY_2693 CHY_2693 "adenylylsulfate kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 98/160 (61%), Positives = 122/160 (76%)

Query:     7 STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG 66
             + N+FW E  I   +R+KLL QKG V+W+TGLSGSGKST+A  +   LY +GKL+Y+LDG
Sbjct:     2 ANNLFWHEGKITAEDREKLLGQKGVVIWLTGLSGSGKSTIARELEAVLYRQGKLAYVLDG 61

Query:    67 DNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPD 126
             DN+R GLNK+LGFS +DR ENIRR+GEVAKLF DAG+I I + ISP+R DRD  R++LP 
Sbjct:    62 DNIRMGLNKDLGFSEKDRQENIRRIGEVAKLFVDAGIIVITAFISPFRADRDKVRSILPA 121

Query:   127 SNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFS 166
               FIEVF++ PLE+CEARD KGLY+ AR GKI     I S
Sbjct:   122 GKFIEVFVDCPLEVCEARDVKGLYQKAREGKIPEFTGITS 161

GO:0004020 "adenylylsulfate kinase activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

UNIPROTKB|Q9NDP8 Ci-ASAK "ATP sulfurylase/APS kinase" [Ciona intestinalis (taxid:7719)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 94/165 (56%), Positives = 123/165 (74%)

Query:     7 STNIFWQESPIGRLERQKLLNQ---KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI 63
             S+NI +Q+  + R ER +++ +   +GC VW TGLSG+GKSTL+  + + L S+G  +Y 
Sbjct:    19 SSNIVYQQHHVSRDERGQVMGKGAFRGCTVWFTGLSGAGKSTLSMKLEEYLCSKGIPAYS 78

Query:    64 LDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAM 123
             LDGDN+RHGLNK+LGF+  DR ENIRR+GEVAKLFADAG++C+ S ISPYRKDR + R +
Sbjct:    79 LDGDNIRHGLNKDLGFAPADREENIRRIGEVAKLFADAGVVCLVSFISPYRKDRQSARRV 138

Query:   124 LPDSN--FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFS 166
                SN  FIEVF++ PL++CE RD KGLYK AR G+IKG   I S
Sbjct:   139 HNKSNLPFIEVFVDTPLQVCEGRDVKGLYKKARQGQIKGFTGIDS 183

GO:0004781 "sulfate adenylyltransferase (ATP) activity" evidence=ISS

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

UNIPROTKB|Q90XY2 Q90XY2 "3'-phosphoadenosine 5'-phosphosulfate synthase 2" [Takifugu rubripes (taxid:31033)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 91/166 (54%), Positives = 120/166 (72%)

Query:     7 STNIFWQESPIGRLERQKLLNQKG----CVVWITGLSGSGKSTLAFSVNKELYSRGKLSY 62
             STN+ +Q   + R +R +++  +G    C +W+TGLSG+GK+T++F++ + L +     Y
Sbjct:    14 STNVVYQAHHVSRSKRGQIVGTRGGFRGCTIWLTGLSGAGKTTISFALEEYLVTHAIPCY 73

Query:    63 ILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRA 122
              LDGDN+RHGLNKNLGFSAEDR ENIRR+ EVAKLFADAGL+CI S ISP+ KDR+  R 
Sbjct:    74 SLDGDNVRHGLNKNLGFSAEDREENIRRIAEVAKLFADAGLVCITSFISPFSKDREEARK 133

Query:   123 MLPDSN--FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFS 166
             +   +   F EVF++ PLE+CE RD KGLYK ARAG+IKG   I S
Sbjct:   134 IHASAGLPFFEVFIHAPLEVCEKRDVKGLYKKARAGEIKGFTGIDS 179

GO:0004781 "sulfate adenylyltransferase (ATP) activity" evidence=ISS

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

UNIPROTKB|Q27128 Q27128 "Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase" [Urechis caupo (taxid:6431)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 87/164 (53%), Positives = 121/164 (73%)

Query:     7 STNIFWQESPIGRLERQKLLNQKG----CVVWITGLSGSGKSTLAFSVNKELYSRGKLSY 62
             +TN+ +Q   + R +R ++L Q+G    C VW TGLSG+GK+T++F++ + L S+G  +Y
Sbjct:    10 ATNVTFQTQHVSRAKRGQVLGQRGGFRGCTVWFTGLSGAGKTTISFALEEYLVSQGIPTY 69

Query:    63 ILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRA 122
              LDGDN+RHGLNKNLGF+ EDR ENIRR+ EVAKLFAD G++C+ S ISP+++DRD  R+
Sbjct:    70 SLDGDNVRHGLNKNLGFTQEDREENIRRISEVAKLFADGGIVCLTSFISPFKRDRDLARS 129

Query:   123 MLPDSN--FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
             +   +   F E F++ PL++CE RD KGLYK ARAG+IKG   I
Sbjct:   130 LHEQAGLPFFECFVDTPLDVCEQRDVKGLYKKARAGQIKGFTGI 173

GO:0000103 "sulfate assimilation" evidence=IGI

GO:0004020 "adenylylsulfate kinase activity" evidence=IGI

GO:0004781 "sulfate adenylyltransferase (ATP) activity" evidence=IGI;ISS

GO:0005524 "ATP binding" evidence=NAS

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

RGD|1307012 Papss2 "3'-phosphoadenosine 5'-phosphosulfate synthase 2" [Rattus norvegicus (taxid:10116)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 95/177 (53%), Positives = 124/177 (70%)

Query:     7 STNIFWQESPIGRLERQKLLNQKG----CVVWITGLSGSGKSTLAFSVNKELYSRGKLSY 62
             STN+ +Q   + R +R +++  +G    C VW+TGLSG+GK+T++F++ + L S     Y
Sbjct:     7 STNVVYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCY 66

Query:    63 ILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRA 122
              LDGDN+RHGLNKNLGFSA DR ENIRR+ EVAKLFADAGL+CI S ISP+ KDR+  R 
Sbjct:    67 SLDGDNVRHGLNKNLGFSAGDREENIRRIAEVAKLFADAGLVCITSFISPFAKDRENARK 126

Query:   123 MLPDSN--FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRT 177
             +   +   F E+F++ PL +CE+RD KGLYK ARAG+IKG   I S   YEK  P T
Sbjct:   127 IHESAGLPFFEIFVDAPLNICESRDVKGLYKRARAGEIKGFTGIDS--NYEK--PET 179

GO:0000103 "sulfate assimilation" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA;ISO

GO:0004781 "sulfate adenylyltransferase (ATP) activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0007596 "blood coagulation" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0016310 "phosphorylation" evidence=ISO

GO:0060348 "bone development" evidence=ISO

UNIPROTKB|F1NPR8 PAPSS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 94/176 (53%), Positives = 122/176 (69%)

Query:     3 TVGNSTNIFWQESPIGRLERQKLLNQKG----CVVWITGLSGSGKSTLAFSVNKELYSRG 58
             T   STN+ +Q   + R +R +++  +G    C VW+TGLSG+GK+T+ F++ + L S G
Sbjct:    12 TFKRSTNVVYQAHHVSRSKRGQVVGTRGGFRGCTVWLTGLSGAGKTTIGFALEEYLVSHG 71

Query:    59 KLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRD 118
                Y LDGDN+RHGLNKNLGFSA DR ENIRR+ EVA+LFADAGL+CI S ISP+ KDR 
Sbjct:    72 IPCYSLDGDNVRHGLNKNLGFSAGDREENIRRIAEVARLFADAGLVCITSFISPFSKDRQ 131

Query:   119 ACRAMLPDSN--FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEK 172
               R +   +   F E+F++ PL +CE+RD KGLYK ARAG+IKG   I S   YEK
Sbjct:   132 NARKIHEAAGLPFFEIFVDAPLNICESRDVKGLYKKARAGEIKGFTGIDSD--YEK 185

GO:0000103 "sulfate assimilation" evidence=IEA

GO:0004781 "sulfate adenylyltransferase (ATP) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0060348 "bone development" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9KCT0	CYSC1_BACHD	2, ., 7, ., 1, ., 2, 5	0.5705	0.8894	0.8366	yes	no
B2VG00	CYSC_ERWT9	2, ., 7, ., 1, ., 2, 5	0.5345	0.8368	0.7910	yes	no
A3D819	CYSC_SHEB5	2, ., 7, ., 1, ., 2, 5	0.5283	0.8368	0.7756	yes	no
Q4L9E6	CYSC_STAHJ	2, ., 7, ., 1, ., 2, 5	0.5652	0.8473	0.8090	yes	no
Q7MPF0	CYSC_VIBVY	2, ., 7, ., 1, ., 2, 5	0.5379	0.8315	0.7632	yes	no
B9DLK2	CYSC_STACT	2, ., 7, ., 1, ., 2, 5	0.5632	0.8315	0.7939	yes	no
B4TTW4	CYSC_SALSV	2, ., 7, ., 1, ., 2, 5	0.5094	0.8368	0.7910	yes	no
B5XV31	CYSC_KLEP3	2, ., 7, ., 1, ., 2, 5	0.5217	0.8473	0.8009	yes	no
A6WJU6	CYSC_SHEB8	2, ., 7, ., 1, ., 2, 5	0.5283	0.8368	0.7756	yes	no
Q88X60	CYSC_LACPL	2, ., 7, ., 1, ., 2, 5	0.5405	0.9473	0.8695	yes	no
Q97MT8	CYSC_CLOAB	2, ., 7, ., 1, ., 2, 5	0.6	0.8368	0.795	yes	no
C0PXB0	CYSC_SALPC	2, ., 7, ., 1, ., 2, 5	0.5094	0.8368	0.7910	yes	no
A6TD42	CYSC_KLEP7	2, ., 7, ., 1, ., 2, 5	0.5217	0.8473	0.8009	yes	no
Q8EQN3	CYSC_OCEIH	2, ., 7, ., 1, ., 2, 5	0.5705	0.8894	0.8492	yes	no
Q8CR04	CYSC_STAES	2, ., 7, ., 1, ., 2, 5	0.5465	0.8473	0.8090	yes	no
Q49UM5	CYSC_STAS1	2, ., 7, ., 1, ., 2, 5	0.5548	0.8473	0.7892	yes	no
P63889	CYSC_SALTY	2, ., 7, ., 1, ., 2, 5	0.5094	0.8368	0.7910	yes	no
A1RGG0	CYSC_SHESW	2, ., 7, ., 1, ., 2, 5	0.5220	0.8368	0.7756	yes	no
B5F414	CYSC_SALA4	2, ., 7, ., 1, ., 2, 5	0.5094	0.8368	0.7910	yes	no
B0TTD2	CYSC_SHEHH	2, ., 7, ., 1, ., 2, 5	0.4916	0.9263	0.8585	yes	no
A4Y9X0	CYSC_SHEPC	2, ., 7, ., 1, ., 2, 5	0.5220	0.8368	0.7756	yes	no
A4WDV5	CYSC_ENT38	2, ., 7, ., 1, ., 2, 5	0.5220	0.8368	0.7910	yes	no
Q5HL02	CYSC_STAEQ	2, ., 7, ., 1, ., 2, 5	0.5465	0.8473	0.8090	yes	no
A1U3X8	CYSC_MARAV	2, ., 7, ., 1, ., 2, 5	0.5786	0.8368	0.7989	yes	no
O06735	CYSC2_BACSU	2, ., 7, ., 1, ., 2, 5	0.5527	0.8473	0.8090	yes	no
A7MJ70	CYSC_CROS8	2, ., 7, ., 1, ., 2, 5	0.5220	0.8368	0.7910	yes	no
B9M543	CYSC_GEOSF	2, ., 7, ., 1, ., 2, 5	0.5170	0.9105	0.8522	yes	no
B5FTS8	CYSC_SALDC	2, ., 7, ., 1, ., 2, 5	0.5094	0.8368	0.7910	yes	no
A9L392	CYSC_SHEB9	2, ., 7, ., 1, ., 2, 5	0.5283	0.8368	0.7756	yes	no
A9N2D7	CYSC_SALPB	2, ., 7, ., 1, ., 2, 5	0.5094	0.8368	0.7910	yes	no
Q8DE75	CYSC_VIBVU	2, ., 7, ., 1, ., 2, 5	0.5379	0.8315	0.7632	yes	no
B5QW21	CYSC_SALEP	2, ., 7, ., 1, ., 2, 5	0.5094	0.8368	0.7910	yes	no
B4T460	CYSC_SALNS	2, ., 7, ., 1, ., 2, 5	0.5094	0.8368	0.7910	yes	no
Q8ZBP3	CYSC_YERPE	2, ., 7, ., 1, ., 2, 5	0.5426	0.8631	0.7699	yes	no
B8EE63	CYSC_SHEB2	2, ., 7, ., 1, ., 2, 5	0.5283	0.8368	0.7756	yes	no
Q57KJ1	CYSC_SALCH	2, ., 7, ., 1, ., 2, 5	0.5094	0.8368	0.7910	yes	no
A5N960	CYSC_CLOK5	2, ., 7, ., 1, ., 2, 5	0.5562	0.8368	0.7989	yes	no
A1S9N4	CYSC_SHEAM	2, ., 7, ., 1, ., 2, 5	0.5506	0.8315	0.7979	yes	no
B4TFX0	CYSC_SALHS	2, ., 7, ., 1, ., 2, 5	0.5094	0.8368	0.7910	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.25	0.914
3rd Layer	2.7.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
PRK03846	198	PRK03846, PRK03846, adenylylsulfate kinase; Provis	1e-89
COG0529	197	COG0529, CysC, Adenylylsulfate kinase and related	2e-88
cd02027	149	cd02027, APSK, Adenosine 5'-phosphosulfate kinase	9e-87
pfam01583	157	pfam01583, APS_kinase, Adenylylsulphate kinase	1e-84
PRK05506	632	PRK05506, PRK05506, bifunctional sulfate adenylylt	6e-82
TIGR00455	184	TIGR00455, apsK, adenylylsulfate kinase (apsK)	5e-73
PRK00889	175	PRK00889, PRK00889, adenylylsulfate kinase; Provis	6e-55
PRK05537	568	PRK05537, PRK05537, bifunctional sulfate adenylylt	7e-45
PRK05541	176	PRK05541, PRK05541, adenylylsulfate kinase; Provis	7e-27
pfam13671	143	pfam13671, AAA_33, AAA domain	2e-08
cd02021	150	cd02021, GntK, Gluconate kinase (GntK) catalyzes t	1e-04
PRK00349	943	PRK00349, uvrA, excinuclease ABC subunit A; Review	2e-04
cd03270	226	cd03270, ABC_UvrA_I, ATP-binding cassette domain I	9e-04
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	0.001
cd01120	165	cd01120, RecA-like_NTPases, RecA-like NTPases	0.002
COG0178	935	COG0178, UvrA, Excinuclease ATPase subunit [DNA re	0.002
smart00382	148	smart00382, AAA, ATPases associated with a variety	0.003
PRK00349	943	PRK00349, uvrA, excinuclease ABC subunit A; Review	0.004

>gnl|CDD|179661 PRK03846, PRK03846, adenylylsulfate kinase; Provisional

 Score =  260 bits (667), Expect = 1e-89
 Identities = 87/160 (54%), Positives = 114/160 (71%)

Query: 7   STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG 66
             NI W + P+ + +R++L   KG V+W TGLSGSGKST+A ++ + L+  G  +Y+LDG
Sbjct: 1   DENIVWHQHPVTKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDG 60

Query: 67  DNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPD 126
           DN+RHGL  +LGFS  DR ENIRRVGEVAKL  DAGL+ + + ISP+R +R   R  L +
Sbjct: 61  DNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGE 120

Query: 127 SNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFS 166
             FIEVF++ PL +CEARDPKGLYK ARAG+I+    I S
Sbjct: 121 GEFIEVFVDTPLAICEARDPKGLYKKARAGEIRNFTGIDS 160

Length = 198

>gnl|CDD|223603 COG0529, CysC, Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

 Score =  257 bits (658), Expect = 2e-88
 Identities = 94/162 (58%), Positives = 119/162 (73%), Gaps = 1/162 (0%)

Query: 8   TNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD 67
            NI W    + + ER+ L  QKG V+W TGLSGSGKST+A ++ ++L+++G   Y+LDGD
Sbjct: 1   ENIVWHPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGD 60

Query: 68  NLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDS 127
           N+RHGLN++LGFS EDR ENIRRV EVAKL ADAGLI I + ISPYR+DR   R +L + 
Sbjct: 61  NVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIVAFISPYREDRQMARELLGEG 120

Query: 128 NFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCY 169
            FIEV+++ PLE+CE RDPKGLYK ARAG+IK    I    Y
Sbjct: 121 EFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGI-DSPY 161

Length = 197

>gnl|CDD|238985 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

 Score =  251 bits (644), Expect = 9e-87
 Identities = 87/135 (64%), Positives = 111/135 (82%)

Query: 32  VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRV 91
           V+W+TGLSGSGKST+A ++ ++L+ RG+  Y+LDGDN+RHGLNK+LGFS EDR ENIRR+
Sbjct: 1   VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRI 60

Query: 92  GEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYK 151
            EVAKL ADAGLI IA+ ISPYR+DR+A R ++   +F+EVF++ PLE+CE RDPKGLYK
Sbjct: 61  AEVAKLLADAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPKGLYK 120

Query: 152 LARAGKIKGLLSIFS 166
            ARAG+IKG   I  
Sbjct: 121 KARAGEIKGFTGIDD 135

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate. Length = 149

>gnl|CDD|216586 pfam01583, APS_kinase, Adenylylsulphate kinase

 Score =  246 bits (630), Expect = 1e-84
 Identities = 92/141 (65%), Positives = 111/141 (78%), Gaps = 1/141 (0%)

Query: 29  KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENI 88
           +GC +W TGLSGSGKST+A ++ ++L+++G   Y+LDGDN+RHGLNK+LGFS EDRTENI
Sbjct: 1   RGCTIWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVRHGLNKDLGFSEEDRTENI 60

Query: 89  RRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKG 148
           RR+ EVAKLFADAGLI I S ISPYR DRD  R +  D  FIEVF++ PLE+CE RDPKG
Sbjct: 61  RRIAEVAKLFADAGLIVITSFISPYRADRDMARELHEDGKFIEVFVDTPLEVCEQRDPKG 120

Query: 149 LYKLARAGKIKGLLSIFSFCY 169
           LYK ARAG+IKG   I    Y
Sbjct: 121 LYKKARAGEIKGFTGI-DSPY 140

Enzyme that catalyzes the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif. Length = 157

>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

 Score =  254 bits (651), Expect = 6e-82
 Identities = 93/168 (55%), Positives = 119/168 (70%), Gaps = 9/168 (5%)

Query: 2   ATVG---------NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNK 52
           ATVG          +TN+ WQ S + R  R     QK   VW TGLSGSGKST+A  V +
Sbjct: 423 ATVGAGMIDFALRRATNVHWQASDVSREARAARKGQKPATVWFTGLSGSGKSTIANLVER 482

Query: 53  ELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISP 112
            L++ G+ +Y+LDGDN+RHGLN++LGFS  DR ENIRRV EVA+L ADAGLI + S ISP
Sbjct: 483 RLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMADAGLIVLVSFISP 542

Query: 113 YRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160
           +R++R+  RA+  +  F+EVF++ PLE+CEARDPKGLY  ARAG+IK 
Sbjct: 543 FREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKN 590

Length = 632

>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK)

 Score =  218 bits (556), Expect = 5e-73
 Identities = 92/153 (60%), Positives = 113/153 (73%), Gaps = 1/153 (0%)

Query: 12  WQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH 71
           W  + I + ERQ L   +G V+W+TGLSGSGKST+A ++ K+L S+G   Y+LDGDN+RH
Sbjct: 1   WHPA-ITKDERQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRH 59

Query: 72  GLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIE 131
           GLNK+LGFS EDR ENIRR+GEVAKLF   G+I I S ISPYR DR   R ++    FIE
Sbjct: 60  GLNKDLGFSEEDRKENIRRIGEVAKLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIE 119

Query: 132 VFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
           VF++ PLE+CE RDPKGLYK AR G+IKG   I
Sbjct: 120 VFVDCPLEVCEQRDPKGLYKKARNGEIKGFTGI 152

This protein, adenylylsulfate kinase, is often found as a fusion protein with sulfate adenylyltransferase. Important residue (active site in E.coli) is residue 100 of the seed alignment [Central intermediary metabolism, Sulfur metabolism]. Length = 184

>gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional

 Score =  171 bits (436), Expect = 6e-55
 Identities = 71/138 (51%), Positives = 93/138 (67%), Gaps = 2/138 (1%)

Query: 27  NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTE 86
            Q+G  VW TGLSG+GK+T+A ++ ++L   G    +LDGD +R  L+K LGFS EDR  
Sbjct: 1   KQRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDT 60

Query: 87  NIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDP 146
           NIRR+G VA L    G+I + S ISPYR+ R+  RA +   NF+EVF++ PLE+CE RD 
Sbjct: 61  NIRRIGFVANLLTRHGVIVLVSAISPYRETREEVRANIG--NFLEVFVDAPLEVCEQRDV 118

Query: 147 KGLYKLARAGKIKGLLSI 164
           KGLY  ARAG+IK    I
Sbjct: 119 KGLYAKARAGEIKHFTGI 136

Length = 175

>gnl|CDD|180124 PRK05537, PRK05537, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

 Score =  155 bits (394), Expect = 7e-45
 Identities = 67/140 (47%), Positives = 86/140 (61%), Gaps = 2/140 (1%)

Query: 27  NQKGCVVWITGLSGSGKSTLAFSVN-KELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRT 85
           +++G  V+ TGLSG+GKST+A ++  K +  RG+   +LDGD +R  L+  LGFS EDR 
Sbjct: 389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRD 448

Query: 86  ENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSN-FIEVFMNMPLELCEAR 144
            NI R+G VA      G I I + I+PYR  R   R M+     FIEV +  PLE+CE R
Sbjct: 449 LNILRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQR 508

Query: 145 DPKGLYKLARAGKIKGLLSI 164
           D KGLY  AR GKIKG   I
Sbjct: 509 DRKGLYAKAREGKIKGFTGI 528

Length = 568

>gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional

 Score =  100 bits (250), Expect = 7e-27
 Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 3/137 (2%)

Query: 28  QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTEN 87
             G V+WITGL+GSGK+T+A ++ + L  +      LDGD LR  L    G+  + R E 
Sbjct: 5   PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHY-GYDKQSRIEM 63

Query: 88  IRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPK 147
             +  ++AK  AD G+I I + IS + +     R  LP  N+ EV++   +E    RD K
Sbjct: 64  ALKRAKLAKFLADQGMIVIVTTISMFDEIYAYNRKHLP--NYFEVYLKCDMEELIRRDQK 121

Query: 148 GLYKLARAGKIKGLLSI 164
           GLY  A  G+IK ++ +
Sbjct: 122 GLYTKALKGEIKNVVGV 138

Length = 176

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 11/119 (9%)

Query: 32  VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRV 91
           ++ + GL GSGKST A         R   + +L  D LR  L  +             RV
Sbjct: 1   LILMVGLPGSGKSTFA-----RRLLRELGAVVLSSDTLRKRLRGDGPPDISYYARASGRV 55

Query: 92  ----GEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSN--FIEVFMNMPLELCEAR 144
                E+A+    AG   I    +  R++R     +          V++  P E+   R
Sbjct: 56  YQRLLELAREALRAGRPVIVDATNLSREERARLIDLARRYGAPVRIVYLEAPEEVLRER 114

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 21/130 (16%)

Query: 35  ITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSA-----EDR---TE 86
           + G+SGSGKST+     K L  R    +I DGD+L    N     +      EDR    +
Sbjct: 4   VMGVSGSGKSTVG----KALAERLGAPFI-DGDDLHPPANIAKMAAGIPLNDEDRWPWLQ 58

Query: 87  NIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDP 146
            +          A  G++   S +   R  RD  R    +     V ++ P E+   R  
Sbjct: 59  ALTDALLAKLASAGEGVVVACSALK--RIYRDILRGGAANPRVRFVHLDGPREVLAERL- 115

Query: 147 KGLYKLARAG 156
                 AR G
Sbjct: 116 -----AARKG 120

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits. Length = 150

>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed

 Score = 41.2 bits (98), Expect = 2e-04
 Identities = 14/17 (82%), Positives = 15/17 (88%), Gaps = 1/17 (5%)

Query: 32 VVWITGLSGSGKSTLAF 48
          VV  TGLSGSGKS+LAF
Sbjct: 29 VV-FTGLSGSGKSSLAF 44

Length = 943

>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA

 Score = 38.4 bits (90), Expect = 9e-04
 Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 3/35 (8%)

Query: 29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI 63
          +  +V ITG+SGSGKS+LAF     +Y+ G+  Y+
Sbjct: 20 RNKLVVITGVSGSGKSSLAFDT---IYAEGQRRYV 51

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 3/31 (9%)

Query: 33 VWITGLSGSGKSTLAFSVNKELYSRGKLSYI 63
          V ITGLSGSGKS+LAF     +Y+ G+  Y+
Sbjct: 25 VVITGLSGSGKSSLAFDT---IYAEGQRRYV 52

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 32  VVWITGLSGSGKSTLAFSVNKELYSRG-KLSYILDGDNLRHGLNKNLGFSAEDRTENIRR 90
           ++ + G +GSGK+TLA  +   + ++G K+ Y+   + +     + +G S +   +N+  
Sbjct: 1   LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLII 60

Query: 91  VGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDS 127
           V   A   A A L+  A       ++R     ++ D 
Sbjct: 61  VFATADDPAAARLLSKAE----RLRERGGDDLIILDE 93

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Length = 165

>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 13/14 (92%), Positives = 14/14 (100%)

Query: 35 ITGLSGSGKSTLAF 48
          ITGLSGSGKS+LAF
Sbjct: 31 ITGLSGSGKSSLAF 44

Length = 935

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 35  ITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-LNKNLGFSAEDRTENIRRVGE 93
           I G  GSGK+TLA ++ +EL   G     +DG+++    L++ L      +  +      
Sbjct: 7   IVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELR 66

Query: 94  VAKLFADA 101
           +    A A
Sbjct: 67  LRLALALA 74

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed

 Score = 37.0 bits (87), Expect = 0.004
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 3/26 (11%)

Query: 30  GCVVWITGLSGSGKSTLAFSVNKELY 55
           G    +TG+SGSGKSTL   +N+ LY
Sbjct: 635 GKFTCVTGVSGSGKSTL---INETLY 657

Length = 943

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.98
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.98
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.98
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.98
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.98
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.97
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.97
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.97
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.97
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.97
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.97
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.97
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.97
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.97
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.97
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.97
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.97
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.97
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.97
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.97
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.97
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.97
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.97
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.97
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.97
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.97
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.97
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.97
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.97
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.97
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.97
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.97
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.97
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.97
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.97
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.97
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.97
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.97
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.97
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.97
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.97
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.97
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.97
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.97
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.97
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.97
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.96
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.96
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.96
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.96
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.96
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.96
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.96
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.96
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.96
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.96
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.96
PRK10908	222	cell division protein FtsE; Provisional	99.96
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.96
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.96
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.96
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.96
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.96
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.96
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.96
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.96
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.96
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.96
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.96
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.96
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.96
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.96
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.96
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.96
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.96
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.96
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.96
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.96
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.96
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.96
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.96
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.96
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.96
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.96
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.96
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.96
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.96
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.96
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.96
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.96
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.96
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.96
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.96
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.96
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.96
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.96
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.96
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.96
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.96
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.96
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.96
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.96
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.96
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.96
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.96
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.96
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.96
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03246	173	ABCC_Protease_Secretion This family represents the	99.96
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.96
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.96
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.96
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.96
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.96
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.96
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.96
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.96
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.96
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.96
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.96
PRK10938	490	putative molybdenum transport ATP-binding protein	99.96
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.96
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.96
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.96
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.96
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.96
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.96
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.96
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.96
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.96
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.96
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.96
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.96
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.96
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.96
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.96
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.96
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.96
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.95
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.95
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.95
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.95
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.95
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.95
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.95
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.95
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.95
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.95
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.95
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.95
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.95
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.95
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.95
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.95
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.95
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.95
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.95
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.95
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.95
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.95
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.95
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.95
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.95
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.95
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.95
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.95
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.95
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.95
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.95
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.95
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.95
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.95
COG1123	539	ATPase components of various ABC-type transport sy	99.95
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.95
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.95
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.95
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.95
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.95
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.95
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.95
COG1123	539	ATPase components of various ABC-type transport sy	99.95
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.95
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.95
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.95
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.95
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.95
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.95
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.95
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.95
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.95
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.95
COG4559	259	ABC-type hemin transport system, ATPase component	99.95
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.95
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.95
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.95
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.95
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.95
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.95
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.95
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.95
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.94
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.94
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.94
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.94
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.94
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.94
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.94
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.94
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.94
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.94
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.94
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.94
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.94
PRK10938	490	putative molybdenum transport ATP-binding protein	99.94
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.94
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.94
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.94
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.94
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.94
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.94
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.94
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.94
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.94
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.94
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.94
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.94
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.94
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.94
PRK11147	635	ABC transporter ATPase component; Reviewed	99.94
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.94
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.94
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.94
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.94
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.94
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.94
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.94
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.94
COG4987	573	CydC ABC-type transport system involved in cytochr	99.94
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.93
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.93
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.93
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.93
COG4988	559	CydD ABC-type transport system involved in cytochr	99.93
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.93
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.93
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.93
PLN03211	659	ABC transporter G-25; Provisional	99.93
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.93
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.93
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.93
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.93
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.93
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.93
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.93
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.93
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.93
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.93
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.93
PRK11147	635	ABC transporter ATPase component; Reviewed	99.93
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.93
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.93
COG4172	534	ABC-type uncharacterized transport system, duplica	99.93
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.93
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.93
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.92
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.92
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	99.92
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.92
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.92
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.92
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.92
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.92
PRK13409	590	putative ATPase RIL; Provisional	99.92
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.92
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.92
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.92
COG4181	228	Predicted ABC-type transport system involved in ly	99.92
PLN03130	1622	ABC transporter C family member; Provisional	99.92
PLN03232	1495	ABC transporter C family member; Provisional	99.92
COG0488	530	Uup ATPase components of ABC transporters with dup	99.92
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.92
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.92
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.91
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.91
COG4172	534	ABC-type uncharacterized transport system, duplica	99.91
PRK13409	590	putative ATPase RIL; Provisional	99.91
PTZ00243	1560	ABC transporter; Provisional	99.91
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.91
PLN03073	718	ABC transporter F family; Provisional	99.91
PLN03073	718	ABC transporter F family; Provisional	99.91
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.91
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.91
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.91
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.9
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.9
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.89
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.89
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.89
PLN03130	1622	ABC transporter C family member; Provisional	99.88
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.88
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.88
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.88
PLN03140	1470	ABC transporter G family member; Provisional	99.87
PLN03232	1495	ABC transporter C family member; Provisional	99.87
COG0488	530	Uup ATPase components of ABC transporters with dup	99.86
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.86
PRK03846	198	adenylylsulfate kinase; Provisional	99.86
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.85
PLN03140	1470	ABC transporter G family member; Provisional	99.85
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.85
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.85
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.85
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.85
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.84
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.84
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.84
PTZ00243	1560	ABC transporter; Provisional	99.83
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.82
COG4178	604	ABC-type uncharacterized transport system, permeas	99.82
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.81
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.81
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.79
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.78
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.77
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.77
PRK00889	175	adenylylsulfate kinase; Provisional	99.75
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.74
KOG0062	582	consensus ATPase component of ABC transporters wit	99.74
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.73
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.72
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.72
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.72
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.71
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.7
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.69
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.69
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.69
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.67
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.66
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.66
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.63
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.63
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.63
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.59
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.57
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.56
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.55
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.55
PRK05541	176	adenylylsulfate kinase; Provisional	99.55
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.51
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.51
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.5
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.49
KOG0062	582	consensus ATPase component of ABC transporters wit	99.48
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.46
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.46
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.43
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.43
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.42
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.4
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.39
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.38
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.33
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.33
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.28
PRK09825	176	idnK D-gluconate kinase; Provisional	99.25
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.25
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.24
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.24
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.21
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.2
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.19
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.15
PRK11545	163	gntK gluconate kinase 1; Provisional	99.14
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.13
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.1
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.09
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.08
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.06
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.05
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.02
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.99
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.99
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	98.94
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.93
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	98.92
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	98.84
PRK00064	361	recF recombination protein F; Reviewed	98.84
cd01128	249	rho_factor Transcription termination factor rho is	98.78
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.78
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.78
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.77
PRK13695	174	putative NTPase; Provisional	98.75
COG3910	233	Predicted ATPase [General function prediction only	98.74
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.71
PRK06762	166	hypothetical protein; Provisional	98.7
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.7
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.69
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.65
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.63
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.62
PRK10416	318	signal recognition particle-docking protein FtsY;	98.61
smart00382	148	AAA ATPases associated with a variety of cellular	98.61
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.58
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.57
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.54
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.54
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.52
PRK09862	506	putative ATP-dependent protease; Provisional	98.49
PRK06067	234	flagellar accessory protein FlaH; Validated	98.47
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.45
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	98.44
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	98.42
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.42
PLN02796	347	D-glycerate 3-kinase	98.42
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.42
PRK00300	205	gmk guanylate kinase; Provisional	98.39
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.38
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.37
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.36
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.35
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.34
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.33
TIGR00767	415	rho transcription termination factor Rho. Members	98.33
PRK08149	428	ATP synthase SpaL; Validated	98.33
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.32
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.31
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.29
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.29
PRK09099	441	type III secretion system ATPase; Provisional	98.27
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.26
PHA02530	300	pseT polynucleotide kinase; Provisional	98.26
PRK05480	209	uridine/cytidine kinase; Provisional	98.25
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.24
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.22
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.22
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.22
PRK06315	442	type III secretion system ATPase; Provisional	98.21
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.19
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.19
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.18
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.17
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	98.17
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.17

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.9e-37  Score=229.25  Aligned_cols=172  Identities=56%  Similarity=0.934  Sum_probs=162.8

Q ss_pred             cceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHH
Q 029613            9 NIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENI   88 (190)
Q Consensus         9 ~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~   88 (190)
                      |+.|+-.......+..+.-++|.++|++|.|||||||++.++...|...|...+++||+++++.+..++||+.+++.+++
T Consensus         2 ni~w~~~~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eni   81 (197)
T COG0529           2 NIVWHPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENI   81 (197)
T ss_pred             CccccccccCHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHH
Confidence            45565556666777788889999999999999999999999999998889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccc
Q 029613           89 RRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFC  168 (190)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (190)
                      ++++.++.++.+.|+..+++..|++...|+.||.++.+.+|+||++|.|...|..||+++||++++.|+|+++||++++ 
T Consensus        82 RRvaevAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGid~p-  160 (197)
T COG0529          82 RRVAEVAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSP-  160 (197)
T ss_pred             HHHHHHHHHHHHCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCCCCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCCCCCceEEec
Q 029613          169 YYEKLIPRTCKKK  181 (190)
Q Consensus       169 ~~~p~~p~~~~~~  181 (190)
                      ||+|.+||+++|-
T Consensus       161 YE~P~~Pel~l~t  173 (197)
T COG0529         161 YEAPENPELHLDT  173 (197)
T ss_pred             CCCCCCCeeEecc
Confidence            9999999999984

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-37  Score=240.86  Aligned_cols=158  Identities=22%  Similarity=0.247  Sum_probs=128.0

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----cccccc
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKNL   77 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~i   77 (190)
                      +||+++|++|+||...+|+++|+++++||+++|+||||||||||+|||+++. .+++|.|.++|.++..     .++..+
T Consensus         1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE-~~~~G~I~i~g~~~~~~~~~~~~R~~v   79 (240)
T COG1126           1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE-EPDSGSITVDGEDVGDKKDILKLRRKV   79 (240)
T ss_pred             CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc-CCCCceEEECCEeccchhhHHHHHHhc
Confidence            3789999999999999999999999999999999999999999999999955 8899999999976532     244555


Q ss_pred             CCChhhH--------HHHHH-------------HHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEE
Q 029613           78 GFSAEDR--------TENIR-------------RVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIE  131 (190)
Q Consensus        78 ~~~~~~~--------~~~~~-------------~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~  131 (190)
                      |++.|..        -+|+.             .-.....++...|+.    .++..|||||+|| +|||||+.+|+++ 
T Consensus        80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vm-  158 (240)
T COG1126          80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVM-  158 (240)
T ss_pred             CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEE-
Confidence            6655541        11110             111233456677775    3689999999999 6999999999999 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHcCCCCCccc
Q 029613          132 VFMNMPLELCEARDPKGLYKLARAGKIKGLLS  163 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~  163 (190)
                       ++|||||+|||..+..+.+.+++..-.|.|.
T Consensus       159 -LFDEPTSALDPElv~EVL~vm~~LA~eGmTM  189 (240)
T COG1126         159 -LFDEPTSALDPELVGEVLDVMKDLAEEGMTM  189 (240)
T ss_pred             -eecCCcccCCHHHHHHHHHHHHHHHHcCCeE
Confidence             9999999999999999988888766666554

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.9e-36  Score=219.07  Aligned_cols=177  Identities=71%  Similarity=1.144  Sum_probs=169.4

Q ss_pred             cCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHH
Q 029613            7 STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTE   86 (190)
Q Consensus         7 ~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~   86 (190)
                      ..|+.|.-.+++--++.-|--++|.++||+|.|||||||++=+|...|...|.-.+.+||++++++++.+++|..+++.+
T Consensus         8 atNI~wh~~~v~k~eRq~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~E   87 (207)
T KOG0635|consen    8 ATNITWHESSVTKEERQKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNE   87 (207)
T ss_pred             ccceeeecCCccHHHHHHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhh
Confidence            67899998888888999999999999999999999999999999999877888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccc
Q 029613           87 NIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFS  166 (190)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~  166 (190)
                      ++++++.++.+|.+.+++.+.+..|++++.|+-+|+++++.+|+||++|.|...++.|+++++|+.++.|+|+|+||+++
T Consensus        88 NIRRigeVaKLFADag~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKgFTGIdd  167 (207)
T KOG0635|consen   88 NIRRIGEVAKLFADAGVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKGFTGIDD  167 (207)
T ss_pred             hHHHHHHHHHHHhccceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCchhHHHHHhcccccccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCceEEecCCc
Q 029613          167 FCYYEKLIPRTCKKKISA  184 (190)
Q Consensus       167 ~~~~~p~~p~~~~~~~~~  184 (190)
                      + ||.|.+|++++.....
T Consensus       168 P-YEaP~~cEi~l~~~~~  184 (207)
T KOG0635|consen  168 P-YEAPLNCEIVLKSHES  184 (207)
T ss_pred             c-ccCCCCcEEEEccCCC
Confidence            9 9999999999987643

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.8e-36  Score=241.18  Aligned_cols=159  Identities=20%  Similarity=0.264  Sum_probs=129.4

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccc-ccccCC
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGL-NKNLGF   79 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~-~~~i~~   79 (190)
                      |.++++++|++++|++.++++|+||++.+|++++|+||||||||||+|+|.|++ +|.+|+|.+.|.+..... ...++|
T Consensus         1 ~~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll-~p~~G~i~~~g~~~~~~~~~~~IgY   79 (254)
T COG1121           1 MMPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL-KPSSGEIKIFGKPVRKRRKRLRIGY   79 (254)
T ss_pred             CCcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-cCCcceEEEccccccccccCCeEEE
Confidence            456899999999999668999999999999999999999999999999999988 889999999988654321 234667


Q ss_pred             ChhhH----------HH-----------HHHH-----HHHHHHHHHHcCccee----ecccCccHHHHH-HHHHhCCCCC
Q 029613           80 SAEDR----------TE-----------NIRR-----VGEVAKLFADAGLICI----ASLISPYRKDRD-ACRAMLPDSN  128 (190)
Q Consensus        80 ~~~~~----------~~-----------~~~~-----~~~~~~~~~~~~~~~~----~~~lS~g~kqr~-iarall~~~~  128 (190)
                      .||..          .+           ++++     ...+...++..++..+    ...|||||+||. +||||+++|+
T Consensus        80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~  159 (254)
T COG1121          80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPD  159 (254)
T ss_pred             cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCC
Confidence            77641          01           0111     1345556677777654    678999999996 9999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                      ++  +|||||+++|+.....+|+.+++.+-+|.+
T Consensus       160 ll--lLDEP~~gvD~~~~~~i~~lL~~l~~eg~t  191 (254)
T COG1121         160 LL--LLDEPFTGVDVAGQKEIYDLLKELRQEGKT  191 (254)
T ss_pred             EE--EecCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence            99  999999999999999999999987665644

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=1.5e-35  Score=237.93  Aligned_cols=151  Identities=20%  Similarity=0.212  Sum_probs=121.1

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      +++++|++++|+++.+++++||++++|++++|+||||||||||+|+|+|++ +|.+|+|.++|.++..    .+...++|
T Consensus         2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l-~p~~G~V~l~g~~i~~~~~kelAk~ia~   80 (258)
T COG1120           2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL-KPKSGEVLLDGKDIASLSPKELAKKLAY   80 (258)
T ss_pred             eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccC-CCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence            689999999999999999999999999999999999999999999999988 7899999999998754    23334455


Q ss_pred             ChhhH----------------HHHHHH--------HHHHHHHHHHcCcce----eecccCccHHHHH-HHHHhCCCCCeE
Q 029613           80 SAEDR----------------TENIRR--------VGEVAKLFADAGLIC----IASLISPYRKDRD-ACRAMLPDSNFI  130 (190)
Q Consensus        80 ~~~~~----------------~~~~~~--------~~~~~~~~~~~~~~~----~~~~lS~g~kqr~-iarall~~~~il  130 (190)
                      .+|..                ..+...        ...+.+.+...++..    .+..||||||||. +|||++++|+++
T Consensus        81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iL  160 (258)
T COG1120          81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPIL  160 (258)
T ss_pred             eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEE
Confidence            55431                000000        012333455555543    3788999999995 999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                        +|||||+.||.+.+..+++.+++..
T Consensus       161 --LLDEPTs~LDi~~Q~evl~ll~~l~  185 (258)
T COG1120         161 --LLDEPTSHLDIAHQIEVLELLRDLN  185 (258)
T ss_pred             --EeCCCccccCHHHHHHHHHHHHHHH
Confidence              9999999999999999998888643

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.7e-35  Score=230.67  Aligned_cols=148  Identities=21%  Similarity=0.230  Sum_probs=118.5

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED   83 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~   83 (190)
                      ++.+++++++|+...+++|+||++.+||+++|+||||||||||+|+|+|+. ++++|+|.++|+.+. ....+++|..|+
T Consensus         3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~-~p~~G~V~~~g~~v~-~p~~~~~~vFQ~   80 (248)
T COG1116           3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE-KPTSGEVLLDGRPVT-GPGPDIGYVFQE   80 (248)
T ss_pred             eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCcccC-CCCCCEEEEecc
Confidence            688999999999999999999999999999999999999999999999977 889999999998762 222223333332


Q ss_pred             --------HHHHH------------HHHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613           84 --------RTENI------------RRVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL  138 (190)
Q Consensus        84 --------~~~~~------------~~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~  138 (190)
                              ..+|.            .+-......+...|+.    .++.+|||||||| +||||++.+|+++  +|||||
T Consensus        81 ~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lL--LlDEPF  158 (248)
T COG1116          81 DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLL--LLDEPF  158 (248)
T ss_pred             CcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEE--EEcCCc
Confidence                    11111            1112344566666764    3589999999999 6999999999999  999999


Q ss_pred             hhhhhcChHHHHHHHHc
Q 029613          139 ELCEARDPKGLYKLARA  155 (190)
Q Consensus       139 ~~ld~~~~~~~~~~~~~  155 (190)
                      ++||.-.+..+.+.+.+
T Consensus       159 gALDalTR~~lq~~l~~  175 (248)
T COG1116         159 GALDALTREELQDELLR  175 (248)
T ss_pred             chhhHHHHHHHHHHHHH
Confidence            99999998887766654

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=3.5e-34  Score=226.82  Aligned_cols=149  Identities=21%  Similarity=0.290  Sum_probs=125.3

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      |++++|++|+|++..+++++||++++||+++++|||||||||++|+|++++ .|++|.|+++|+++..    .++..+||
T Consensus         1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi-ept~G~I~i~g~~i~~~d~~~LRr~IGY   79 (309)
T COG1125           1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI-EPTSGEILIDGEDISDLDPVELRRKIGY   79 (309)
T ss_pred             CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc-CCCCceEEECCeecccCCHHHHHHhhhh
Confidence            689999999999999999999999999999999999999999999999988 8899999999998764    45666777


Q ss_pred             Chhh--------HHHHHHHHH------------HHHHHHHHcCcc------eeecccCccHHHHH-HHHHhCCCCCeEEE
Q 029613           80 SAED--------RTENIRRVG------------EVAKLFADAGLI------CIASLISPYRKDRD-ACRAMLPDSNFIEV  132 (190)
Q Consensus        80 ~~~~--------~~~~~~~~~------------~~~~~~~~~~~~------~~~~~lS~g~kqr~-iarall~~~~il~v  132 (190)
                      .-+.        ..+++..+.            .+.+++...++.      .++.+|||||+||. +|||++.+|+++  
T Consensus        80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il--  157 (309)
T COG1125          80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL--  157 (309)
T ss_pred             hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE--
Confidence            7665        234433321            233445555553      36999999999995 999999999999  


Q ss_pred             EeeCCchhhhhcChHHHHHHHHc
Q 029613          133 FMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       133 llDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +|||||++||+-.++.+.+.+.+
T Consensus       158 LMDEPFgALDpI~R~~lQ~e~~~  180 (309)
T COG1125         158 LMDEPFGALDPITRKQLQEEIKE  180 (309)
T ss_pred             eecCCccccChhhHHHHHHHHHH
Confidence            99999999999999988877765

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.1e-35  Score=242.48  Aligned_cols=169  Identities=21%  Similarity=0.192  Sum_probs=131.7

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccC
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLG   78 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~   78 (190)
                      |. +|+++|++|.|++..+++++|+++++||+++|+||||||||||+|+|+|+. .+++|.|+++|+++..  +...+++
T Consensus         1 M~-~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe-~~~~G~I~i~g~~vt~l~P~~R~ia   78 (338)
T COG3839           1 MA-ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE-EPTSGEILIDGRDVTDLPPEKRGIA   78 (338)
T ss_pred             Cc-EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCChhHCCEE
Confidence            54 689999999999877999999999999999999999999999999999976 8899999999988754  1222333


Q ss_pred             CChhh-----------------------HHHHHHHHHHHHHHHHHcCcc-eeecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613           79 FSAED-----------------------RTENIRRVGEVAKLFADAGLI-CIASLISPYRKDR-DACRAMLPDSNFIEVF  133 (190)
Q Consensus        79 ~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~lS~g~kqr-~iarall~~~~il~vl  133 (190)
                      +..|.                       ..+..+++.+++..+....+. ..+..|||||+|| ++|||++.+|+++  +
T Consensus        79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~--L  156 (338)
T COG3839          79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVF--L  156 (338)
T ss_pred             EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEE--E
Confidence            33332                       123334455566555443333 3589999999999 6999999999999  9


Q ss_pred             eeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCc
Q 029613          134 MNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPR  176 (190)
Q Consensus       134 lDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~  176 (190)
                      ||||+|+||.+.+..+..-+++.|  ...+.+.. |.+++..|
T Consensus       157 ~DEPlSnLDa~lR~~mr~ei~~lh--~~l~~T~I-YVTHDq~E  196 (338)
T COG3839         157 LDEPLSNLDAKLRVLMRSEIKKLH--ERLGTTTI-YVTHDQVE  196 (338)
T ss_pred             ecCchhHhhHHHHHHHHHHHHHHH--HhcCCcEE-EEcCCHHH
Confidence            999999999999888777776532  33456666 88877665

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=6.3e-34  Score=237.56  Aligned_cols=168  Identities=20%  Similarity=0.225  Sum_probs=128.2

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCC
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFS   80 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~   80 (190)
                      +.++++|++|+|++..+++|+||++++||+++|+|||||||||++|+|+|+. .|++|.|.++|+++..  .-+..++++
T Consensus         4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe-~p~~G~I~l~G~~i~~lpp~kR~ig~V   82 (352)
T COG3842           4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE-QPSSGEILLDGEDITDVPPEKRPIGMV   82 (352)
T ss_pred             ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCChhhccccee
Confidence            4789999999999999999999999999999999999999999999999966 8999999999998764  122334444


Q ss_pred             hhh--------HHHHHHH------------H-HHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613           81 AED--------RTENIRR------------V-GEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFM  134 (190)
Q Consensus        81 ~~~--------~~~~~~~------------~-~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vll  134 (190)
                      .|+        ..+|+..            + ..+.+++...++.    ..+..|||||+|| ++||||+.+|+++  +|
T Consensus        83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vL--LL  160 (352)
T COG3842          83 FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVL--LL  160 (352)
T ss_pred             ecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchh--hh
Confidence            443        1222110            0 1333444444443    3489999999999 6999999999999  99


Q ss_pred             eCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCc
Q 029613          135 NMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPR  176 (190)
Q Consensus       135 DEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~  176 (190)
                      |||+|+||.+.++.+..-+++.+  .-.|.+.. |-+++.-|
T Consensus       161 DEPlSaLD~kLR~~mr~Elk~lq--~~~giT~i-~VTHDqeE  199 (352)
T COG3842         161 DEPLSALDAKLREQMRKELKELQ--RELGITFV-YVTHDQEE  199 (352)
T ss_pred             cCcccchhHHHHHHHHHHHHHHH--HhcCCeEE-EEECCHHH
Confidence            99999999999887776666532  22355555 66655433

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.1e-33  Score=214.05  Aligned_cols=166  Identities=16%  Similarity=0.213  Sum_probs=129.3

Q ss_pred             ccccCcceeccCccc-cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCC
Q 029613            4 VGNSTNIFWQESPIG-RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGF   79 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~-~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~   79 (190)
                      |+++++++|+|++.. +++|+||++++|++++|+|||||||||++|+|++++ .|++|.+.++|-+...   ..+..+|.
T Consensus         1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL-~P~~G~v~idg~d~~~~p~~vrr~IGV   79 (245)
T COG4555           1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL-IPDSGKVTIDGVDTVRDPSFVRRKIGV   79 (245)
T ss_pred             CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhc-cCCCceEEEeecccccChHHHhhhcce
Confidence            689999999999865 999999999999999999999999999999999999 8899999999977543   12333333


Q ss_pred             Chhh--------HHHHHHHHHH------------HHHHHHHcCccee----ecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613           80 SAED--------RTENIRRVGE------------VAKLFADAGLICI----ASLISPYRKDR-DACRAMLPDSNFIEVFM  134 (190)
Q Consensus        80 ~~~~--------~~~~~~~~~~------------~~~~~~~~~~~~~----~~~lS~g~kqr-~iarall~~~~il~vll  134 (190)
                      ...+        .++++..++.            ++.+...+++..+    +..+|-|+||| .+|||++++|.++  +|
T Consensus        80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~--vl  157 (245)
T COG4555          80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSIL--VL  157 (245)
T ss_pred             ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeE--EE
Confidence            2221        3344444322            2334444555443    67899999999 5999999999999  99


Q ss_pred             eCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCc
Q 029613          135 NMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPR  176 (190)
Q Consensus       135 DEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~  176 (190)
                      |||+++||.+..+.+++.+++.+..|..=+    |.++.-+|
T Consensus       158 DEP~sGLDi~~~r~~~dfi~q~k~egr~vi----FSSH~m~E  195 (245)
T COG4555         158 DEPTSGLDIRTRRKFHDFIKQLKNEGRAVI----FSSHIMQE  195 (245)
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhcCCcEEE----EecccHHH
Confidence            999999999999999999998777665433    44454444

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.98  E-value=6.5e-33  Score=224.83  Aligned_cols=149  Identities=23%  Similarity=0.264  Sum_probs=120.1

Q ss_pred             ccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------
Q 029613            4 VGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------   71 (190)
Q Consensus         4 ~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------   71 (190)
                      ||++++++|.|..     ..+++++||+|++|+++||+|+||||||||+|+|+++ ..|++|.|+++|+++..       
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L-e~PtsG~v~v~G~di~~l~~~~Lr   79 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL-ERPTSGSVFVDGQDLTALSEAELR   79 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc-CCCCCceEEEcCEecccCChHHHH
Confidence            5899999999975     5799999999999999999999999999999999995 48999999999987643       


Q ss_pred             ccccccCCChhh--------HHHHH------------HHHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCC
Q 029613           72 GLNKNLGFSAED--------RTENI------------RRVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        72 ~~~~~i~~~~~~--------~~~~~------------~~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~  126 (190)
                      .++..+++..|.        ..+++            ..-.++.++++..|+.    .+++.|||||||| .||||++.+
T Consensus        80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~  159 (339)
T COG1135          80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN  159 (339)
T ss_pred             HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence            233344443332        11111            1113455666666664    3689999999999 599999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      |+++  +.|||||+|||...+.+.+.+++
T Consensus       160 P~iL--L~DEaTSALDP~TT~sIL~LL~~  186 (339)
T COG1135         160 PKIL--LCDEATSALDPETTQSILELLKD  186 (339)
T ss_pred             CCEE--EecCccccCChHHHHHHHHHHHH
Confidence            9999  99999999999999999988876

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.98  E-value=1.1e-32  Score=227.41  Aligned_cols=157  Identities=18%  Similarity=0.243  Sum_probs=127.0

Q ss_pred             CCcccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccc
Q 029613            1 MATVGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKN   76 (190)
Q Consensus         1 m~~~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~   76 (190)
                      |..+++++|++|.|+ .+.+|+++||++++|++++|+||||||||||+|+|+|++ .+.+|.|.++|.+...   ..+..
T Consensus         1 ~~~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~-~p~~G~i~i~G~~~~~~~~~~~~~   79 (293)
T COG1131           1 MIEVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL-KPTSGEILVLGYDVVKEPAKVRRR   79 (293)
T ss_pred             CCceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEEcCEeCccCHHHHHhh
Confidence            445678899999999 699999999999999999999999999999999999988 7899999999977653   34445


Q ss_pred             cCCChhh--------HHHHHHHHH------------HHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEE
Q 029613           77 LGFSAED--------RTENIRRVG------------EVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIE  131 (190)
Q Consensus        77 i~~~~~~--------~~~~~~~~~------------~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~  131 (190)
                      ++|.+++        ..+++..+.            .+..++..+++..    .+..+|+||||| .+|+||+.+|+++ 
T Consensus        80 igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~ll-  158 (293)
T COG1131          80 IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELL-  158 (293)
T ss_pred             eEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEE-
Confidence            6666554        223332221            2344566666653    367799999999 5999999999999 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          132 VFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                       +|||||++||+..+..+++.+++....|
T Consensus       159 -iLDEPt~GLDp~~~~~~~~~l~~l~~~g  186 (293)
T COG1131         159 -ILDEPTSGLDPESRREIWELLRELAKEG  186 (293)
T ss_pred             -EECCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence             9999999999999999999998754444

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.98  E-value=1.4e-32  Score=215.58  Aligned_cols=150  Identities=21%  Similarity=0.288  Sum_probs=119.3

Q ss_pred             cccccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------ccc
Q 029613            3 TVGNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------GLN   74 (190)
Q Consensus         3 ~~l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~~~   74 (190)
                      +||+++|+++.| ++++++++|||+|++||+++|+|+||||||||+|+|+|++ +++.|+|.++|.++..       ..+
T Consensus         2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~-d~t~G~i~~~g~~i~~~~~k~lr~~r   80 (258)
T COG3638           2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV-DPTSGEILFNGVQITKLKGKELRKLR   80 (258)
T ss_pred             ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc-CCCcceEEecccchhccchHHHHHHH
Confidence            479999999999 7899999999999999999999999999999999999977 8899999999977542       123


Q ss_pred             cccCCChhh--------HHHH-----------HHHH---------HHHHHHHHHcCccee----ecccCccHHHH-HHHH
Q 029613           75 KNLGFSAED--------RTEN-----------IRRV---------GEVAKLFADAGLICI----ASLISPYRKDR-DACR  121 (190)
Q Consensus        75 ~~i~~~~~~--------~~~~-----------~~~~---------~~~~~~~~~~~~~~~----~~~lS~g~kqr-~iar  121 (190)
                      ..+|+..+.        ..++           ++.+         .+....++..++.+.    ...|||||+|| +|||
T Consensus        81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR  160 (258)
T COG3638          81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR  160 (258)
T ss_pred             HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence            334443332        1111           0000         123345566666543    67799999999 6999


Q ss_pred             HhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          122 AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       122 all~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +|+++|+++  +.|||+++||+...+.+.+.+++
T Consensus       161 aL~Q~pkiI--LADEPvasLDp~~a~~Vm~~l~~  192 (258)
T COG3638         161 ALVQQPKII--LADEPVASLDPESAKKVMDILKD  192 (258)
T ss_pred             HHhcCCCEE--ecCCcccccChhhHHHHHHHHHH
Confidence            999999999  99999999999999999888876

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.98  E-value=9e-32  Score=201.82  Aligned_cols=152  Identities=57%  Similarity=0.981  Sum_probs=131.9

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceeec
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIAS  108 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (190)
                      +|.++||+|.+|||||||++.|...|...+...+++||+.+...+..+++|+.+++.++++++..++.++...|...+++
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva   80 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA   80 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence            57899999999999999999999999888889999999999998888999999999999999999999999999999999


Q ss_pred             ccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEec
Q 029613          109 LISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKK  181 (190)
Q Consensus       109 ~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~  181 (190)
                      ..|+.+..|+.+|.++.+.+++||++|.|...|..|+++++|+.++.|++++++|++++ ||+|.+||+++|-
T Consensus        81 ~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~KglY~ka~~g~i~~~~Gvd~~-ye~P~~pdl~idt  152 (156)
T PF01583_consen   81 FISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDPKGLYAKARAGEIKNFTGVDDP-YEEPLNPDLVIDT  152 (156)
T ss_dssp             ----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTTTSHHHHHHTTSSSSHTTTSS------SS-SEEEET
T ss_pred             eccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCchhHHHHhhCCCcCCccccccC-CCCCCCCeEEEeC
Confidence            99999999999999999889999999999999999999999999999999999999999 9999999999984

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.98  E-value=2.3e-32  Score=215.69  Aligned_cols=150  Identities=24%  Similarity=0.257  Sum_probs=118.7

Q ss_pred             ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------
Q 029613            4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-------   72 (190)
Q Consensus         4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-------   72 (190)
                      |++++|++|.|+.    ..+|+++||++++||+++|+||||||||||+++|.|+. .|++|.|.++|.++...       
T Consensus         1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld-~pt~G~v~i~g~d~~~l~~~~~~~   79 (226)
T COG1136           1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD-KPTSGEVLINGKDLTKLSEKELAK   79 (226)
T ss_pred             CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCceEEECCEEcCcCCHHHHHH
Confidence            4678999999854    47999999999999999999999999999999999976 77999999999776421       


Q ss_pred             -cccccCCChhh--------HHHHHH------------HHHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCC
Q 029613           73 -LNKNLGFSAED--------RTENIR------------RVGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLP  125 (190)
Q Consensus        73 -~~~~i~~~~~~--------~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~  125 (190)
                       -+..+||..|.        ..+++.            .......++..+++.     ..+..|||||+|| +||||++.
T Consensus        80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~  159 (226)
T COG1136          80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN  159 (226)
T ss_pred             HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence             12234554443        223332            112233444555664     4588999999999 69999999


Q ss_pred             CCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          126 DSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +|+++  +.||||.+||.+..+.+.+.+++.
T Consensus       160 ~P~ii--lADEPTgnLD~~t~~~V~~ll~~~  188 (226)
T COG1136         160 NPKII--LADEPTGNLDSKTAKEVLELLREL  188 (226)
T ss_pred             CCCeE--EeeCccccCChHHHHHHHHHHHHH
Confidence            99999  999999999999999999998875

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.97  E-value=3.5e-32  Score=214.33  Aligned_cols=150  Identities=22%  Similarity=0.240  Sum_probs=118.0

Q ss_pred             cccccCcceeccCccc----cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----c
Q 029613            3 TVGNSTNIFWQESPIG----RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----L   73 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~----~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~   73 (190)
                      +|++++|+++.|+...    ++++|||++.+||+++|+|+||||||||+|+|+|+. ++..|.|.++|..+...     .
T Consensus         2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~-~p~~G~I~~~G~~~~~~~~~~~~   80 (252)
T COG1124           2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE-KPSSGSILLDGKPLAPKKRAKAF   80 (252)
T ss_pred             ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc-CCCCceEEECCcccCccccchhh
Confidence            4899999999998877    999999999999999999999999999999999966 88999999999765331     1


Q ss_pred             ccccCCChhh----------HHHHHH----------HHHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCC
Q 029613           74 NKNLGFSAED----------RTENIR----------RVGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        74 ~~~i~~~~~~----------~~~~~~----------~~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~  127 (190)
                      ...+-+..|+          ..+.+.          .-.++.+++...++.     .++.+|||||+|| +||||+..+|
T Consensus        81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P  160 (252)
T COG1124          81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP  160 (252)
T ss_pred             ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence            1122222222          000000          001255666666664     3588999999999 7999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +++  ++|||||+||......++..+.+
T Consensus       161 klL--IlDEptSaLD~siQa~IlnlL~~  186 (252)
T COG1124         161 KLL--ILDEPTSALDVSVQAQILNLLLE  186 (252)
T ss_pred             CEE--EecCchhhhcHHHHHHHHHHHHH
Confidence            999  99999999999999888877765

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=3.1e-32  Score=214.53  Aligned_cols=158  Identities=12%  Similarity=0.159  Sum_probs=135.4

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED   83 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~   83 (190)
                      ++++++++|+|+.+.+++|+||++++|+++|++|+|||||||++|+|.|++ .+++|.|.++|.++.....+.+||.|++
T Consensus         2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgll-e~~~G~I~~~g~~~~~~~~~rIGyLPEE   80 (300)
T COG4152           2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL-EPTEGEITWNGGPLSQEIKNRIGYLPEE   80 (300)
T ss_pred             ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccC-CccCceEEEcCcchhhhhhhhcccChhh
Confidence            589999999999999999999999999999999999999999999999988 8899999999999998888889999987


Q ss_pred             H--------HHHHHHHH------------HHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613           84 R--------TENIRRVG------------EVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL  138 (190)
Q Consensus        84 ~--------~~~~~~~~------------~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~  138 (190)
                      +        .+.+..++            ++..++.++.+..    .+..||.|++|+ .+..+++++|+++  +|||||
T Consensus        81 RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLl--ILDEPF  158 (300)
T COG4152          81 RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELL--ILDEPF  158 (300)
T ss_pred             hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEE--EecCCc
Confidence            4        23333332            2344566655543    377899999999 6999999999999  999999


Q ss_pred             hhhhhcChHHHHHHHHcCCCCCcccc
Q 029613          139 ELCEARDPKGLYKLARAGKIKGLLSI  164 (190)
Q Consensus       139 ~~ld~~~~~~~~~~~~~~~~~~~~~~  164 (190)
                      |+||+..++-+-+.+.+.+..|.+=+
T Consensus       159 SGLDPVN~elLk~~I~~lk~~GatIi  184 (300)
T COG4152         159 SGLDPVNVELLKDAIFELKEEGATII  184 (300)
T ss_pred             cCCChhhHHHHHHHHHHHHhcCCEEE
Confidence            99999999999999988777775433

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=1.7e-32  Score=215.66  Aligned_cols=151  Identities=23%  Similarity=0.223  Sum_probs=118.5

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------cccc
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------GLNK   75 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~~~~   75 (190)
                      +++++++++++|+++.++++++|++.+||+++|+|+||||||||+|+|.|++ +|.+|+|+++|.++..       .++.
T Consensus         7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll-~P~~GeI~i~G~~i~~ls~~~~~~ir~   85 (263)
T COG1127           7 PLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL-RPDKGEILIDGEDIPQLSEEELYEIRK   85 (263)
T ss_pred             ceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC-CCCCCeEEEcCcchhccCHHHHHHHHh
Confidence            4789999999999999999999999999999999999999999999999988 8999999999988643       1222


Q ss_pred             ccCCChhh--------HHHHHH------------HHHHH-HHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCC
Q 029613           76 NLGFSAED--------RTENIR------------RVGEV-AKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        76 ~i~~~~~~--------~~~~~~------------~~~~~-~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      .+|+..|.        ..+|..            .+.++ ...++..|+.     .++++|||||++| ++|||++.+|+
T Consensus        86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPe  165 (263)
T COG1127          86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPE  165 (263)
T ss_pred             heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCC
Confidence            22322221        112211            11121 2234445553     3589999999999 59999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++  ++||||++|||-.-..+-+++++.
T Consensus       166 ll--~~DEPtsGLDPI~a~~~~~LI~~L  191 (263)
T COG1127         166 LL--FLDEPTSGLDPISAGVIDELIREL  191 (263)
T ss_pred             EE--EecCCCCCCCcchHHHHHHHHHHH
Confidence            99  999999999999988888777764

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.97  E-value=8.5e-32  Score=205.02  Aligned_cols=156  Identities=21%  Similarity=0.226  Sum_probs=125.4

Q ss_pred             ccccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------ccc
Q 029613            4 VGNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-------LNK   75 (190)
Q Consensus         4 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-------~~~   75 (190)
                      ||+++|++|+|++ .++|+|+||++++||++.|+||||||||||+|+|++.. .|+.|.|+++|.++..-       ++.
T Consensus         1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e-~pt~G~i~~~~~dl~~l~~~~iP~LRR   79 (223)
T COG2884           1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-RPTRGKILVNGHDLSRLKGREIPFLRR   79 (223)
T ss_pred             CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh-cCCCceEEECCeecccccccccchhhh
Confidence            5899999999964 55999999999999999999999999999999999977 88999999999887542       344


Q ss_pred             ccCCChhhH--------HHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeE
Q 029613           76 NLGFSAEDR--------TENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        76 ~i~~~~~~~--------~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      .+|.+.|+.        .++...            -.++...++..|+.    .++..||||++|| +||||++++|.++
T Consensus        80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL  159 (223)
T COG2884          80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVL  159 (223)
T ss_pred             eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence            455555541        122110            12344556666664    3588999999999 5999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                        +.||||.+||+.....+...+.+-+-.|-|
T Consensus       160 --lADEPTGNLDp~~s~~im~lfeeinr~GtT  189 (223)
T COG2884         160 --LADEPTGNLDPDLSWEIMRLFEEINRLGTT  189 (223)
T ss_pred             --eecCCCCCCChHHHHHHHHHHHHHhhcCcE
Confidence              999999999999999999998886666633

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.97  E-value=2.7e-32  Score=226.58  Aligned_cols=157  Identities=18%  Similarity=0.128  Sum_probs=122.8

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---cccccc
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNL   77 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i   77 (190)
                      |..+++++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..   ..+..+
T Consensus         4 ~~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~-~p~~G~v~i~G~~~~~~~~~~~~~i   82 (306)
T PRK13537          4 SVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT-HPDAGSISLCGEPVPSRARHARQRV   82 (306)
T ss_pred             CCceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEecccchHHHHhcE
Confidence            345899999999999889999999999999999999999999999999999987 7889999999987642   122334


Q ss_pred             CCChhh--------HHHHHHHHH------------HHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613           78 GFSAED--------RTENIRRVG------------EVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEV  132 (190)
Q Consensus        78 ~~~~~~--------~~~~~~~~~------------~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~v  132 (190)
                      +|.+++        ..+++....            .+..++...++..    .+..+|+||+|| .+|+|++.+|+++  
T Consensus        83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~ll--  160 (306)
T PRK13537         83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVL--  160 (306)
T ss_pred             EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEE--
Confidence            444433        223322111            1223444445432    367899999999 6999999999999  


Q ss_pred             EeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          133 FMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       133 llDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      +|||||++||+..++.+++.+++....|
T Consensus       161 lLDEPt~gLD~~~~~~l~~~l~~l~~~g  188 (306)
T PRK13537        161 VLDEPTTGLDPQARHLMWERLRSLLARG  188 (306)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999998754334

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=5.5e-32  Score=219.15  Aligned_cols=149  Identities=23%  Similarity=0.271  Sum_probs=117.8

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc---cccc--ccccccC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD---NLRH--GLNKNLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~---~~~~--~~~~~i~   78 (190)
                      +|.++++++.|+...++++++++|+.||.++|+||||||||||+|+|+|+. .|+.|.|.++|+   +...  .-...+|
T Consensus         2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe-~p~~G~I~~~~~~l~D~~~~~~~~R~VG   80 (345)
T COG1118           2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE-TPDAGRIRLNGRVLFDVSNLAVRDRKVG   80 (345)
T ss_pred             ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC-CCCCceEEECCEeccchhccchhhccee
Confidence            689999999999999999999999999999999999999999999999977 899999999998   4322  1112344


Q ss_pred             CChhhH-------------------------HHHHHHHHHHHHHHHHcCcc-eeecccCccHHHH-HHHHHhCCCCCeEE
Q 029613           79 FSAEDR-------------------------TENIRRVGEVAKLFADAGLI-CIASLISPYRKDR-DACRAMLPDSNFIE  131 (190)
Q Consensus        79 ~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~lS~g~kqr-~iarall~~~~il~  131 (190)
                      |..|+.                         .+...++.++..+++..++. .++..|||||+|| ++|||++.+|+++ 
T Consensus        81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vL-  159 (345)
T COG1118          81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVL-  159 (345)
T ss_pred             EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeE-
Confidence            444431                         12223344444445444443 4699999999999 6999999999999 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHc
Q 029613          132 VFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                       +||||+.+||...++.+-+-+++
T Consensus       160 -LLDEPf~ALDa~vr~~lr~wLr~  182 (345)
T COG1118         160 -LLDEPFGALDAKVRKELRRWLRK  182 (345)
T ss_pred             -eecCCchhhhHHHHHHHHHHHHH
Confidence             99999999999988776655554

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=9e-33  Score=211.93  Aligned_cols=154  Identities=18%  Similarity=0.246  Sum_probs=124.9

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----ccccccC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKNLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~i~   78 (190)
                      +|.++|+.|+|+.+++++++||++++||+++|+|||||||||.+.++.|++ ++++|.|.+++.+++.     -++..++
T Consensus         4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv-~~d~G~i~ld~~diT~lPm~~RArlGig   82 (243)
T COG1137           4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV-RPDSGKILLDDEDITKLPMHKRARLGIG   82 (243)
T ss_pred             EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE-ecCCceEEECCcccccCChHHHhhcCcc
Confidence            578999999999999999999999999999999999999999999999988 8899999999998764     2445678


Q ss_pred             CChhhH--------HHHHHHHH--------------HHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEE
Q 029613           79 FSAEDR--------TENIRRVG--------------EVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIE  131 (190)
Q Consensus        79 ~~~~~~--------~~~~~~~~--------------~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~  131 (190)
                      |.+|+.        .+++..+-              .+-.+++++.+..    ....||||+|+| +|||||+.+|.|+ 
T Consensus        83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fi-  161 (243)
T COG1137          83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFI-  161 (243)
T ss_pred             cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEE-
Confidence            888862        23322211              1223444444433    256799999999 7999999999999 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          132 VFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                       +|||||++.||-....+.+.++..+-.|
T Consensus       162 -LLDEPFAGVDPiaV~dIq~iI~~L~~rg  189 (243)
T COG1137         162 -LLDEPFAGVDPIAVIDIQRIIKHLKDRG  189 (243)
T ss_pred             -EecCCccCCCchhHHHHHHHHHHHHhCC
Confidence             9999999999999888888877654444

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.97  E-value=1.5e-31  Score=224.87  Aligned_cols=154  Identities=18%  Similarity=0.136  Sum_probs=120.8

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFS   80 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~   80 (190)
                      +++++|++++|+++.+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++..   ..+..++|.
T Consensus        41 ~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~-~p~~G~i~i~G~~~~~~~~~~~~~ig~v  119 (340)
T PRK13536         41 AIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT-SPDAGKITVLGVPVPARARLARARIGVV  119 (340)
T ss_pred             eEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCceEEEECCEECCcchHHHhccEEEE
Confidence            689999999999989999999999999999999999999999999999987 7889999999987642   122334444


Q ss_pred             hhh--------HHHHHHHHH------------HHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613           81 AED--------RTENIRRVG------------EVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMN  135 (190)
Q Consensus        81 ~~~--------~~~~~~~~~------------~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllD  135 (190)
                      +++        ..+++....            .+..++...++..    .+..+|+||+|| .+|++++.+|+++  +||
T Consensus       120 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lL--iLD  197 (340)
T PRK13536        120 PQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLL--ILD  197 (340)
T ss_pred             eCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEE--EEE
Confidence            332        122222111            1223344455432    367799999999 6999999999999  999


Q ss_pred             CCchhhhhcChHHHHHHHHcCCCCC
Q 029613          136 MPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       136 EP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      |||++||+..++.+++.+++....|
T Consensus       198 EPt~gLD~~~r~~l~~~l~~l~~~g  222 (340)
T PRK13536        198 EPTTGLDPHARHLIWERLRSLLARG  222 (340)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999998754334

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.97  E-value=1.9e-31  Score=210.85  Aligned_cols=151  Identities=17%  Similarity=0.208  Sum_probs=116.6

Q ss_pred             ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------cc
Q 029613            4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-------LN   74 (190)
Q Consensus         4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-------~~   74 (190)
                      |++++|++++|++  ..+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++...       .+
T Consensus         1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (216)
T TIGR00960         1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE-KPTRGKIRFNGQDLTRLRGREIPFLR   79 (216)
T ss_pred             CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEehhhcChhHHHHHH
Confidence            4789999999964  46999999999999999999999999999999999977 78899999999765320       12


Q ss_pred             cccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCe
Q 029613           75 KNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        75 ~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      ..++|.+++        ..+++..            ...+...+...++..    .+..+|+||+|| .+||+++.+|++
T Consensus        80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l  159 (216)
T TIGR00960        80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL  159 (216)
T ss_pred             HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            233443332        1222211            112333445555532    367899999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      +  +|||||++||...++.+++.+++-+
T Consensus       160 l--llDEPt~~LD~~~~~~l~~~l~~~~  185 (216)
T TIGR00960       160 L--LADEPTGNLDPELSRDIMRLFEEFN  185 (216)
T ss_pred             E--EEeCCCCcCCHHHHHHHHHHHHHHH
Confidence            9  9999999999999999999988643

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=1.4e-31  Score=209.54  Aligned_cols=152  Identities=19%  Similarity=0.235  Sum_probs=123.0

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccccc
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNL   77 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i   77 (190)
                      +|++++|++..|+..++|+++||++++||+++|+|+||+|||||+|+|+|++ ++.+|+|.++|+++...     .+..+
T Consensus         2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~-~~~~G~I~~~G~dit~~p~~~r~r~Gi   80 (237)
T COG0410           2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV-RPRSGRIIFDGEDITGLPPHERARLGI   80 (237)
T ss_pred             CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeeEEECCeecCCCCHHHHHhCCe
Confidence            5899999999999999999999999999999999999999999999999987 77799999999998642     34456


Q ss_pred             CCChhhH--------HHHHHH--------------HHHHHHHHHHcCc--ceeecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613           78 GFSAEDR--------TENIRR--------------VGEVAKLFADAGL--ICIASLISPYRKDR-DACRAMLPDSNFIEV  132 (190)
Q Consensus        78 ~~~~~~~--------~~~~~~--------------~~~~~~~~~~~~~--~~~~~~lS~g~kqr-~iarall~~~~il~v  132 (190)
                      +|+|+.+        +||+..              +..+..+|..+.-  ......||||++|. +|||||+.+|+++  
T Consensus        81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL--  158 (237)
T COG0410          81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL--  158 (237)
T ss_pred             EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE--
Confidence            6777652        333321              1223333322111  12367799999999 7999999999999  


Q ss_pred             EeeCCchhhhhcChHHHHHHHHcCC
Q 029613          133 FMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       133 llDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      +||||+.+|-|.-.+.+++.+++.+
T Consensus       159 LLDEPs~GLaP~iv~~I~~~i~~l~  183 (237)
T COG0410         159 LLDEPSEGLAPKIVEEIFEAIKELR  183 (237)
T ss_pred             EecCCccCcCHHHHHHHHHHHHHHH
Confidence            9999999999999999999988754

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3.8e-31  Score=223.64  Aligned_cols=151  Identities=17%  Similarity=0.100  Sum_probs=119.4

Q ss_pred             CCcccccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--ccccc
Q 029613            1 MATVGNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNL   77 (190)
Q Consensus         1 m~~~l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i   77 (190)
                      |+ +++++|++++| ++..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|+|.++|.++...  ....+
T Consensus         1 m~-~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~-~p~~G~I~~~g~~i~~~~~~~r~i   78 (356)
T PRK11650          1 MA-GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE-RITSGEIWIGGRVVNELEPADRDI   78 (356)
T ss_pred             CC-EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCE
Confidence            54 68999999999 7788999999999999999999999999999999999977 78999999999876421  12233


Q ss_pred             CCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613           78 GFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEV  132 (190)
Q Consensus        78 ~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~v  132 (190)
                      +|.+++        ..+++..            -..+..++...++..    .+..||+||+|| ++|||++.+|+++  
T Consensus        79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~ll--  156 (356)
T PRK11650         79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVF--  156 (356)
T ss_pred             EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE--
Confidence            443332        2222221            012334455555533    477899999999 6999999999999  


Q ss_pred             EeeCCchhhhhcChHHHHHHHHc
Q 029613          133 FMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       133 llDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +|||||++||...++.+.+.+++
T Consensus       157 LLDEP~s~LD~~~r~~l~~~l~~  179 (356)
T PRK11650        157 LFDEPLSNLDAKLRVQMRLEIQR  179 (356)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999998888875

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.97  E-value=4e-31  Score=208.64  Aligned_cols=150  Identities=19%  Similarity=0.251  Sum_probs=116.5

Q ss_pred             ccccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------cccc
Q 029613            4 VGNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------GLNK   75 (190)
Q Consensus         4 ~l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~~~~   75 (190)
                      |++++|++++| ++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..       ....
T Consensus         1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (214)
T TIGR02673         1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL-TPSRGQVRIAGEDVNRLRGRQLPLLRR   79 (214)
T ss_pred             CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcccCCHHHHHHHHh
Confidence            47899999999 4678999999999999999999999999999999999977 7789999999976532       1122


Q ss_pred             ccCCChhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613           76 NLGFSAED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        76 ~i~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      .++|.+++        ..+++...            ..+..++...++..    .+..+|+||+|| .+||+++.+|+++
T Consensus        80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll  159 (214)
T TIGR02673        80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLL  159 (214)
T ss_pred             heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence            33443332        12222110            12233444455532    367899999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +|||||++||+..+..+++.+++-
T Consensus       160 --lLDEPt~~LD~~~~~~l~~~l~~~  183 (214)
T TIGR02673       160 --LADEPTGNLDPDLSERILDLLKRL  183 (214)
T ss_pred             --EEeCCcccCCHHHHHHHHHHHHHH
Confidence              999999999999999999999874

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.97  E-value=7.1e-31  Score=207.19  Aligned_cols=149  Identities=20%  Similarity=0.234  Sum_probs=115.6

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCChh
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSAE   82 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~~   82 (190)
                      ++++|++++|++.++++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++..  .....++|.++
T Consensus         1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~i~~v~q   79 (213)
T cd03259           1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE-RPDSGEILIDGRDVTGVPPERRNIGMVFQ   79 (213)
T ss_pred             CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence            46889999998888999999999999999999999999999999999987 7889999999976532  11122333333


Q ss_pred             h--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613           83 D--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMP  137 (190)
Q Consensus        83 ~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP  137 (190)
                      +        ..+++..            ...+..++...++..    .+..+|+||+|| .+||+++.+|+++  +||||
T Consensus        80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~l--llDEP  157 (213)
T cd03259          80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLL--LLDEP  157 (213)
T ss_pred             chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEE--EEcCC
Confidence            2        1122111            011233444555532    367799999999 6999999999999  99999


Q ss_pred             chhhhhcChHHHHHHHHcC
Q 029613          138 LELCEARDPKGLYKLARAG  156 (190)
Q Consensus       138 ~~~ld~~~~~~~~~~~~~~  156 (190)
                      |++||+..++.+++.+++-
T Consensus       158 t~~LD~~~~~~l~~~l~~~  176 (213)
T cd03259         158 LSALDAKLREELREELKEL  176 (213)
T ss_pred             cccCCHHHHHHHHHHHHHH
Confidence            9999999999999998864

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.97  E-value=6e-31  Score=206.52  Aligned_cols=152  Identities=20%  Similarity=0.272  Sum_probs=116.9

Q ss_pred             ccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-ccccccCCChhh
Q 029613            6 NSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-GLNKNLGFSAED   83 (190)
Q Consensus         6 ~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-~~~~~i~~~~~~   83 (190)
                      +++|++++|++ .++++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ..+..++|.+++
T Consensus         1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~i~~~~q~   79 (205)
T cd03226           1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI-KESSGSILLNGKPIKAKERRKSIGYVMQD   79 (205)
T ss_pred             CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEhhhHHhhcceEEEecC
Confidence            46899999987 78999999999999999999999999999999999977 7889999999987532 111223333332


Q ss_pred             ---------HHHHHHHH--------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhh
Q 029613           84 ---------RTENIRRV--------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELC  141 (190)
Q Consensus        84 ---------~~~~~~~~--------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~l  141 (190)
                               ..+++...        ..+..++...++..    .+..+|+||+|| .+||+++.+|+++  +|||||++|
T Consensus        80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll--llDEPt~~L  157 (205)
T cd03226          80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLL--IFDEPTSGL  157 (205)
T ss_pred             hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEE--EEeCCCccC
Confidence                     12222110        12334455555533    367799999999 6999999999999  999999999


Q ss_pred             hhcChHHHHHHHHcCCCCC
Q 029613          142 EARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       142 d~~~~~~~~~~~~~~~~~~  160 (190)
                      |+..++.+.+.+++-...|
T Consensus       158 D~~~~~~l~~~l~~~~~~~  176 (205)
T cd03226         158 DYKNMERVGELIRELAAQG  176 (205)
T ss_pred             CHHHHHHHHHHHHHHHHCC
Confidence            9999999999998653334

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.97  E-value=7.3e-31  Score=210.06  Aligned_cols=149  Identities=21%  Similarity=0.193  Sum_probs=116.0

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------cccccc
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------GLNKNL   77 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~~~~~i   77 (190)
                      ++++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..       ..+..+
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~i   79 (235)
T cd03261           1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL-RPDSGEVLIDGEDISGLSEAELYRLRRRM   79 (235)
T ss_pred             CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccChhhHHHHhcce
Confidence            46889999998888999999999999999999999999999999999977 7889999999976532       112234


Q ss_pred             CCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEE
Q 029613           78 GFSAED--------RTENIRR-------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIE  131 (190)
Q Consensus        78 ~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~  131 (190)
                      +|.+++        ..+++..             ...+..++...++..    .+..+|+||+|| .+||+++.+|+++ 
T Consensus        80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ll-  158 (235)
T cd03261          80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELL-  158 (235)
T ss_pred             EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE-
Confidence            443332        1222211             011233445555532    367799999999 6999999999999 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHcC
Q 029613          132 VFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                       +|||||++||+..++.+.+.+++-
T Consensus       159 -llDEPt~~LD~~~~~~l~~~l~~~  182 (235)
T cd03261         159 -LYDEPTAGLDPIASGVIDDLIRSL  182 (235)
T ss_pred             -EecCCcccCCHHHHHHHHHHHHHH
Confidence             999999999999999999988864

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=8.6e-31  Score=209.48  Aligned_cols=153  Identities=23%  Similarity=0.277  Sum_probs=118.6

Q ss_pred             CC-cccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---
Q 029613            1 MA-TVGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---   72 (190)
Q Consensus         1 m~-~~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---   72 (190)
                      |+ +|++++|++++|+.    .++++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++...   
T Consensus         1 ~~~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~i~~~~~~   79 (233)
T PRK11629          1 MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD-TPTSGDVIFNGQPMSKLSSA   79 (233)
T ss_pred             CCCceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcCcCCHH
Confidence            55 47899999999964    46999999999999999999999999999999999987 78899999999775321   


Q ss_pred             ----c-ccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHH
Q 029613           73 ----L-NKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRA  122 (190)
Q Consensus        73 ----~-~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iara  122 (190)
                          . ...++|.+++        ..+++..            -..+..++...++..    .+..+|+||+|| .+||+
T Consensus        80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~a  159 (233)
T PRK11629         80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARA  159 (233)
T ss_pred             HHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence                0 1223433332        2222211            012334455555532    367799999999 69999


Q ss_pred             hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++.+|+++  +|||||++||+..++.+++.+++.
T Consensus       160 l~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~  191 (233)
T PRK11629        160 LVNNPRLV--LADEPTGNLDARNADSIFQLLGEL  191 (233)
T ss_pred             HhcCCCEE--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999  999999999999999999988864

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.97  E-value=9.1e-31  Score=207.16  Aligned_cols=149  Identities=24%  Similarity=0.232  Sum_probs=115.3

Q ss_pred             cccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--------
Q 029613            5 GNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--------   72 (190)
Q Consensus         5 l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--------   72 (190)
                      ++++|++++|++    ..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++...        
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~   79 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD-RPTSGEVRVDGTDISKLSEKELAAF   79 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc-CCCceeEEECCEehhhcchhHHHHH
Confidence            468899999976    68999999999999999999999999999999999987 78899999999765321        


Q ss_pred             cccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613           73 LNKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        73 ~~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~  127 (190)
                      ....++|.+++        ..+++..            -..+..++...++..    .+..+|+||+|| .+||+++.+|
T Consensus        80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  159 (218)
T cd03255          80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP  159 (218)
T ss_pred             HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence            11223333322        1222211            012334455555532    367799999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++  +|||||++||+..++.+++.+++-
T Consensus       160 ~ll--lLDEP~~~LD~~~~~~l~~~l~~~  186 (218)
T cd03255         160 KII--LADEPTGNLDSETGKEVMELLREL  186 (218)
T ss_pred             CEE--EEcCCcccCCHHHHHHHHHHHHHH
Confidence            999  999999999999999999988864

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.97  E-value=1e-30  Score=207.31  Aligned_cols=148  Identities=20%  Similarity=0.197  Sum_probs=114.5

Q ss_pred             cccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCC
Q 029613            5 GNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFS   80 (190)
Q Consensus         5 l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~   80 (190)
                      ++++|++++|++    ..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ....++|.
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~-~~~~i~~v   78 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE-RPTSGEVLVDGEPVTG-PGPDRGYV   78 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECcc-ccCcEEEE
Confidence            468899999987    68999999999999999999999999999999999977 7789999999976532 11122222


Q ss_pred             hhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613           81 AED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMN  135 (190)
Q Consensus        81 ~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllD  135 (190)
                      +++        ..+++..            ...+..++...++..    .+..+|+||+|| .+||+++.+|+++  +||
T Consensus        79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ll--lLD  156 (220)
T cd03293          79 FQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVL--LLD  156 (220)
T ss_pred             ecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE--EEC
Confidence            221        1222211            112334455555532    367899999999 6999999999999  999


Q ss_pred             CCchhhhhcChHHHHHHHHcC
Q 029613          136 MPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       136 EP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |||++||+..++.+++.+++-
T Consensus       157 EPt~~LD~~~~~~~~~~l~~~  177 (220)
T cd03293         157 EPFSALDALTREQLQEELLDI  177 (220)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999988764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.97  E-value=7.7e-31  Score=206.55  Aligned_cols=149  Identities=14%  Similarity=0.185  Sum_probs=115.1

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh-
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED-   83 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~-   83 (190)
                      ++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++.......++|.+++ 
T Consensus         1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~i~~~~q~~   79 (210)
T cd03269           1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII-LPDSGEVLFDGKPLDIAARNRIGYLPEER   79 (210)
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCCchhHHHHccEEEeccCC
Confidence            46889999998888999999999999999999999999999999999977 7889999999977632112222222221 


Q ss_pred             -------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613           84 -------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE  139 (190)
Q Consensus        84 -------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~  139 (190)
                             ..+++...            ..+..++...++..    .+..+|+||+|| .+||+++.+|+++  +|||||+
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~l--llDEP~~  157 (210)
T cd03269          80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELL--ILDEPFS  157 (210)
T ss_pred             cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCCc
Confidence                   12222110            12233444455432    367799999999 6999999999999  9999999


Q ss_pred             hhhhcChHHHHHHHHcC
Q 029613          140 LCEARDPKGLYKLARAG  156 (190)
Q Consensus       140 ~ld~~~~~~~~~~~~~~  156 (190)
                      +||+..++.+++.+++-
T Consensus       158 ~LD~~~~~~~~~~l~~~  174 (210)
T cd03269         158 GLDPVNVELLKDVIREL  174 (210)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998864

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=5.8e-31  Score=222.03  Aligned_cols=150  Identities=19%  Similarity=0.200  Sum_probs=118.2

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccCCCh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLGFSA   81 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~~~~   81 (190)
                      +|+++|++++|++..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++...  .+..++|..
T Consensus         6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~vf   84 (351)
T PRK11432          6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE-KPTEGQIFIDGEDVTHRSIQQRDICMVF   84 (351)
T ss_pred             EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEe
Confidence            789999999999888999999999999999999999999999999999977 78999999999876421  112233333


Q ss_pred             hh--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613           82 ED--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNM  136 (190)
Q Consensus        82 ~~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDE  136 (190)
                      ++        ..+++..            -..+..++...++.    ..+..||+||+|| ++||+++.+|+++  +|||
T Consensus        85 Q~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lL--LLDE  162 (351)
T PRK11432         85 QSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVL--LFDE  162 (351)
T ss_pred             CCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE--EEcC
Confidence            32        2222221            11223344444443    3478899999999 6999999999999  9999


Q ss_pred             CchhhhhcChHHHHHHHHcC
Q 029613          137 PLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       137 P~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+++||...++.+.+.+++.
T Consensus       163 P~s~LD~~~r~~l~~~l~~l  182 (351)
T PRK11432        163 PLSNLDANLRRSMREKIREL  182 (351)
T ss_pred             CcccCCHHHHHHHHHHHHHH
Confidence            99999999999998888753

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.97  E-value=7.7e-31  Score=217.55  Aligned_cols=151  Identities=17%  Similarity=0.153  Sum_probs=117.8

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccCC
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLGF   79 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~~   79 (190)
                      .+++++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++...   .+..++|
T Consensus         3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~   81 (303)
T TIGR01288         3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI-SPDRGKITVLGEPVPSRARLARVAIGV   81 (303)
T ss_pred             cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECcccHHHHhhcEEE
Confidence            4789999999999888999999999999999999999999999999999977 78899999999765321   1223344


Q ss_pred             Chhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613           80 SAED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFM  134 (190)
Q Consensus        80 ~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vll  134 (190)
                      .+++        ..+++...            ..+..++...++..    .+..||+||+|| .+||+++.+|+++  +|
T Consensus        82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll--lL  159 (303)
T TIGR01288        82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLL--IL  159 (303)
T ss_pred             EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE--EE
Confidence            3332        12222110            11223344445432    367899999999 6999999999999  99


Q ss_pred             eCCchhhhhcChHHHHHHHHcC
Q 029613          135 NMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       135 DEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ||||++||+..++.+++.+++.
T Consensus       160 DEPt~gLD~~~~~~l~~~l~~~  181 (303)
T TIGR01288       160 DEPTTGLDPHARHLIWERLRSL  181 (303)
T ss_pred             eCCCcCCCHHHHHHHHHHHHHH
Confidence            9999999999999999998874

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=8.8e-31  Score=209.91  Aligned_cols=139  Identities=19%  Similarity=0.241  Sum_probs=114.7

Q ss_pred             CCcccccCcceeccCc---------cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613            1 MATVGNSTNIFWQESP---------IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH   71 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~---------~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~   71 (190)
                      |.++++++|+++.|..         +.++++|||++.+||+++|+|+|||||||+.|+|.|++ .|++|+|+|+|+++..
T Consensus         1 ~~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~-~pt~G~i~f~g~~i~~   79 (268)
T COG4608           1 MEPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE-EPTSGEILFEGKDITK   79 (268)
T ss_pred             CCceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc-CCCCceEEEcCcchhh
Confidence            3457899999999842         47899999999999999999999999999999999977 8899999999998753


Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHcCc-----ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613           72 GLNKNLGFSAEDRTENIRRVGEVAKLFADAGL-----ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARD  145 (190)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~  145 (190)
                             +...+.   .   ..+.+++...++     ..++.++||||+|| .||||++.+|+++  ++|||+|+||...
T Consensus        80 -------~~~~~~---~---~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~li--V~DEpvSaLDvSi  144 (268)
T COG4608          80 -------LSKEER---R---ERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLI--VADEPVSALDVSV  144 (268)
T ss_pred             -------cchhHH---H---HHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEE--EecCchhhcchhH
Confidence                   222111   1   233344444444     34689999999999 6999999999999  9999999999999


Q ss_pred             hHHHHHHHHc
Q 029613          146 PKGLYKLARA  155 (190)
Q Consensus       146 ~~~~~~~~~~  155 (190)
                      +.++..++++
T Consensus       145 qaqIlnLL~d  154 (268)
T COG4608         145 QAQILNLLKD  154 (268)
T ss_pred             HHHHHHHHHH
Confidence            8888877776

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.97  E-value=1.3e-30  Score=209.35  Aligned_cols=150  Identities=21%  Similarity=0.263  Sum_probs=116.0

Q ss_pred             ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------cccc
Q 029613            4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------GLNK   75 (190)
Q Consensus         4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~~~~   75 (190)
                      |++++|++++|+ +.++++++||++.+|++++|+||||||||||+++|+|++ ++.+|+|.++|.++..       ..+.
T Consensus         1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (243)
T TIGR02315         1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV-EPSSGSILLEGTDITKLRGKKLRKLRR   79 (243)
T ss_pred             CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCccEEEECCEEhhhCCHHHHHHHHh
Confidence            478999999998 778999999999999999999999999999999999977 7889999999976532       0122


Q ss_pred             ccCCChhh--------HHHHHHH--------------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHH
Q 029613           76 NLGFSAED--------RTENIRR--------------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRA  122 (190)
Q Consensus        76 ~i~~~~~~--------~~~~~~~--------------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iara  122 (190)
                      .++|.+++        ..+++..                    ...+..++...++..    .+..+|+||+|| .+||+
T Consensus        80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a  159 (243)
T TIGR02315        80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARA  159 (243)
T ss_pred             heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence            23333322        1122210                    012233444445432    367799999999 69999


Q ss_pred             hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++.+|+++  +|||||++||+..++.+++.+++.
T Consensus       160 l~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~  191 (243)
T TIGR02315       160 LAQQPDLI--LADEPIASLDPKTSKQVMDYLKRI  191 (243)
T ss_pred             HhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            99999999  999999999999999999988764

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.2e-30  Score=200.65  Aligned_cols=152  Identities=22%  Similarity=0.185  Sum_probs=114.7

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hC---CCcEEEEcCcccccc------c
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SR---GKLSYILDGDNLRHG------L   73 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~---~~g~i~~~g~~~~~~------~   73 (190)
                      .++++|+++.|+.+.+|++||+.|.++++++|+|||||||||++|+++.+.. -+   -.|.|.++|+++...      +
T Consensus         7 ~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~l   86 (253)
T COG1117           7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVEL   86 (253)
T ss_pred             eeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHH
Confidence            5789999999999999999999999999999999999999999999999653 11   248899999987642      3


Q ss_pred             ccccCCChhh-------HHHHHHH-----------HHH-HHHHHHHcCcc--------eeecccCccHHHH-HHHHHhCC
Q 029613           74 NKNLGFSAED-------RTENIRR-----------VGE-VAKLFADAGLI--------CIASLISPYRKDR-DACRAMLP  125 (190)
Q Consensus        74 ~~~i~~~~~~-------~~~~~~~-----------~~~-~~~~~~~~~~~--------~~~~~lS~g~kqr-~iarall~  125 (190)
                      +..+|++.|.       ..++...           +.+ +...+....++        ..+..|||||+|| .|||+++.
T Consensus        87 Rr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv  166 (253)
T COG1117          87 RRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAV  166 (253)
T ss_pred             HHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhc
Confidence            4445554443       2222211           111 11122222332        2355699999999 69999999


Q ss_pred             CCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          126 DSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      +|+++  +||||||+||+-...++=+.+.+.+
T Consensus       167 ~PeVl--LmDEPtSALDPIsT~kIEeLi~eLk  196 (253)
T COG1117         167 KPEVL--LMDEPTSALDPISTLKIEELITELK  196 (253)
T ss_pred             CCcEE--EecCcccccCchhHHHHHHHHHHHH
Confidence            99999  9999999999999888777777633

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.97  E-value=5.6e-31  Score=221.37  Aligned_cols=150  Identities=23%  Similarity=0.222  Sum_probs=118.7

Q ss_pred             ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------
Q 029613            4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-------   72 (190)
Q Consensus         4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-------   72 (190)
                      ||+++|++++|++    ..+++++||++++|++++|+|+||||||||+|+|+|++ ++.+|.|.++|.++...       
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~-~p~~G~I~i~G~~i~~~~~~~l~~   79 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTSGSVIVDGQDLTTLSNSELTK   79 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHH
Confidence            5789999999952    47999999999999999999999999999999999977 78999999999876431       


Q ss_pred             cccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613           73 LNKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        73 ~~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~  127 (190)
                      .+..++|.+++        ..+++..            ...+.+++...++..    .+..||+||+|| .||||++.+|
T Consensus        80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P  159 (343)
T TIGR02314        80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP  159 (343)
T ss_pred             HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence            12334444433        1222211            112344555566643    478899999999 5999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++  ++||||++||+..++.+++.+++-
T Consensus       160 ~iL--LlDEPts~LD~~t~~~i~~lL~~l  186 (343)
T TIGR02314       160 KVL--LCDEATSALDPATTQSILELLKEI  186 (343)
T ss_pred             CEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            999  999999999999999999888874

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.97  E-value=1.1e-30  Score=222.07  Aligned_cols=152  Identities=16%  Similarity=0.150  Sum_probs=119.6

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccC
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLG   78 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~   78 (190)
                      |.++|+++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++...  .+..++
T Consensus        11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig   89 (375)
T PRK09452         11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE-TPDSGRIMLDGQDITHVPAENRHVN   89 (375)
T ss_pred             CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHCCEE
Confidence            345789999999999888999999999999999999999999999999999977 78899999999876421  112233


Q ss_pred             CChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613           79 FSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVF  133 (190)
Q Consensus        79 ~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vl  133 (190)
                      |..++        ..+++..            -..+..++...++..    .+..||+||+|| ++||+++.+|+++  +
T Consensus        90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ll--L  167 (375)
T PRK09452         90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVL--L  167 (375)
T ss_pred             EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE--E
Confidence            33332        2233221            012333444445533    478899999999 6999999999999  9


Q ss_pred             eeCCchhhhhcChHHHHHHHHc
Q 029613          134 MNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       134 lDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      ||||+++||...++.+.+.+++
T Consensus       168 LDEP~s~LD~~~r~~l~~~L~~  189 (375)
T PRK09452        168 LDESLSALDYKLRKQMQNELKA  189 (375)
T ss_pred             EeCCCCcCCHHHHHHHHHHHHH
Confidence            9999999999999999888876

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.97  E-value=3e-30  Score=198.96  Aligned_cols=138  Identities=22%  Similarity=0.232  Sum_probs=111.5

Q ss_pred             ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHH
Q 029613            6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRT   85 (190)
Q Consensus         6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~   85 (190)
                      +++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++..       +......
T Consensus         1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~-~~~~G~v~~~g~~~~~-------~~~~~~~   72 (180)
T cd03214           1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL-KPSSGEILLDGKDLAS-------LSPKELA   72 (180)
T ss_pred             CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCc-------CCHHHHH
Confidence            4689999998888999999999999999999999999999999999977 7889999999987642       2222222


Q ss_pred             HHHHHHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           86 ENIRRVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ..+..+.+   ++...++.    ..+..+|+||+|| .+||+++.+|+++  +|||||++||...++.+++.+++-
T Consensus        73 ~~i~~~~q---~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ll--llDEP~~~LD~~~~~~~~~~l~~~  143 (180)
T cd03214          73 RKIAYVPQ---ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPIL--LLDEPTSHLDIAHQIELLELLRRL  143 (180)
T ss_pred             HHHhHHHH---HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE--EEeCCccCCCHHHHHHHHHHHHHH
Confidence            22222222   44444443    2367799999999 6999999999999  999999999999999999888764

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.97  E-value=1.5e-30  Score=208.82  Aligned_cols=150  Identities=20%  Similarity=0.212  Sum_probs=115.7

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccCCCh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLGFSA   81 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~~~~   81 (190)
                      +++++|++++|++..+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++...  ....++|.+
T Consensus         2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~v~   80 (239)
T cd03296           2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE-RPDSGTILFGGEDATDVPVQERNVGFVF   80 (239)
T ss_pred             EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCCccccceEEEe
Confidence            588999999998888999999999999999999999999999999999977 78899999999765321  111222222


Q ss_pred             hh--------HHHHHHH----------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613           82 ED--------RTENIRR----------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEV  132 (190)
Q Consensus        82 ~~--------~~~~~~~----------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~v  132 (190)
                      ++        ..+++..                ...+..++...++..    .+..+|+||+|| .+||+++.+|+++  
T Consensus        81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll--  158 (239)
T cd03296          81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVL--  158 (239)
T ss_pred             cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEE--
Confidence            21        1122110                011233444455532    367799999999 6999999999999  


Q ss_pred             EeeCCchhhhhcChHHHHHHHHcC
Q 029613          133 FMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       133 llDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +|||||++||+..++.+++.+++-
T Consensus       159 llDEP~~~LD~~~~~~l~~~l~~~  182 (239)
T cd03296         159 LLDEPFGALDAKVRKELRRWLRRL  182 (239)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999988764

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.97  E-value=1.2e-30  Score=206.37  Aligned_cols=151  Identities=16%  Similarity=0.201  Sum_probs=117.1

Q ss_pred             ccccCcceeccCcc----ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccc
Q 029613            4 VGNSTNIFWQESPI----GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKN   76 (190)
Q Consensus         4 ~l~~~~l~~~~~~~----~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~   76 (190)
                      |++++|++++|++.    ++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..   ..+..
T Consensus         1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~   79 (218)
T cd03266           1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL-EPDAGFATVDGFDVVKEPAEARRR   79 (218)
T ss_pred             CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCCceEEECCEEcccCHHHHHhh
Confidence            47899999999876    7999999999999999999999999999999999977 7889999999976532   11222


Q ss_pred             cCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEE
Q 029613           77 LGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIE  131 (190)
Q Consensus        77 i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~  131 (190)
                      ++|.+++        ..+++..            ...+..++...++..    .+..+|+||+|| .+||+++.+|+++ 
T Consensus        80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~il-  158 (218)
T cd03266          80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVL-  158 (218)
T ss_pred             EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEE-
Confidence            3333322        1222211            112233455555532    367799999999 6999999999999 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          132 VFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                       +|||||++||+..++.+++.+++-.
T Consensus       159 -llDEPt~~LD~~~~~~l~~~l~~~~  183 (218)
T cd03266         159 -LLDEPTTGLDVMATRALREFIRQLR  183 (218)
T ss_pred             -EEcCCCcCCCHHHHHHHHHHHHHHH
Confidence             9999999999999999999998643

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.97  E-value=2.4e-30  Score=206.72  Aligned_cols=150  Identities=22%  Similarity=0.210  Sum_probs=117.2

Q ss_pred             ccccCcceeccCcc----ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------
Q 029613            4 VGNSTNIFWQESPI----GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-------   72 (190)
Q Consensus         4 ~l~~~~l~~~~~~~----~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-------   72 (190)
                      |++++|++++|++.    ++++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++...       
T Consensus         1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~   79 (233)
T cd03258           1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE-RPTSGSVLVDGTDLTLLSGKELRK   79 (233)
T ss_pred             CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcccCCHHHHHH
Confidence            47899999999876    8999999999999999999999999999999999987 78899999999875321       


Q ss_pred             cccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613           73 LNKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        73 ~~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~  127 (190)
                      ....++|.+++        ..+++..            ...+..++...++..    .+..+|+||+|| .+||+++.+|
T Consensus        80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  159 (233)
T cd03258          80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP  159 (233)
T ss_pred             HHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence            12233433332        1222211            112233445555532    367799999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++  +|||||++||+..++.+++.+++.
T Consensus       160 ~ll--lLDEP~~~LD~~~~~~l~~~l~~~  186 (233)
T cd03258         160 KVL--LCDEATSALDPETTQSILALLRDI  186 (233)
T ss_pred             CEE--EecCCCCcCCHHHHHHHHHHHHHH
Confidence            999  999999999999999999988864

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.97  E-value=2.3e-30  Score=206.18  Aligned_cols=152  Identities=20%  Similarity=0.212  Sum_probs=116.6

Q ss_pred             CcccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----
Q 029613            2 ATVGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----   72 (190)
Q Consensus         2 ~~~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----   72 (190)
                      .+|++++|++++|++    ..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++...     
T Consensus         4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~~~~~~~~~~   82 (228)
T PRK10584          4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD-DGSSGEVSLVGQPLHQMDEEAR   82 (228)
T ss_pred             CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCeeEEECCEEcccCCHHHH
Confidence            458999999999975    35999999999999999999999999999999999977 78899999999765321     


Q ss_pred             --c-ccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhC
Q 029613           73 --L-NKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAML  124 (190)
Q Consensus        73 --~-~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall  124 (190)
                        . ...++|.+++        ..+++..            -.++..++...++..    .+..+|+||+|| .+||+++
T Consensus        83 ~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~  162 (228)
T PRK10584         83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFN  162 (228)
T ss_pred             HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHh
Confidence              0 1123332222        1122211            012333444555532    367899999999 6999999


Q ss_pred             CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+|+++  +|||||++||+..++.+.+.+++-
T Consensus       163 ~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~  192 (228)
T PRK10584        163 GRPDVL--FADEPTGNLDRQTGDKIADLLFSL  192 (228)
T ss_pred             cCCCEE--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence            999999  999999999999999999998764

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.97  E-value=9.8e-31  Score=220.88  Aligned_cols=149  Identities=22%  Similarity=0.242  Sum_probs=119.1

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCCh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSA   81 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~   81 (190)
                      +|+++|++++|++..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|+++..  .....++|.+
T Consensus         4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~-~p~~G~I~i~g~~~~~~~~~~r~ig~v~   82 (353)
T TIGR03265         4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE-RQTAGTIYQGGRDITRLPPQKRDYGIVF   82 (353)
T ss_pred             EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEe
Confidence            689999999999888999999999999999999999999999999999977 7899999999987642  1122334433


Q ss_pred             hh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613           82 ED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNM  136 (190)
Q Consensus        82 ~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDE  136 (190)
                      ++        ..+++..            -..+..++...++..    .+..||+||+|| ++||+++.+|+++  +|||
T Consensus        83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ll--LLDE  160 (353)
T TIGR03265        83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLL--LLDE  160 (353)
T ss_pred             CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEcC
Confidence            32        2222221            112334455555543    478899999999 6999999999999  9999


Q ss_pred             CchhhhhcChHHHHHHHHc
Q 029613          137 PLELCEARDPKGLYKLARA  155 (190)
Q Consensus       137 P~~~ld~~~~~~~~~~~~~  155 (190)
                      |+++||...++.+.+.+++
T Consensus       161 P~s~LD~~~r~~l~~~L~~  179 (353)
T TIGR03265       161 PLSALDARVREHLRTEIRQ  179 (353)
T ss_pred             CcccCCHHHHHHHHHHHHH
Confidence            9999999999999888876

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.4e-30  Score=213.26  Aligned_cols=153  Identities=16%  Similarity=0.192  Sum_probs=120.2

Q ss_pred             CCcccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccc
Q 029613            1 MATVGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNK   75 (190)
Q Consensus         1 m~~~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~   75 (190)
                      |+++++++|++++|+ ...+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..    ....
T Consensus         1 ~~~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~   79 (274)
T PRK13647          1 MDNIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY-LPQRGRVKVMGREVNAENEKWVRS   79 (274)
T ss_pred             CCceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCceEEEECCEECCCCCHHHHHh
Confidence            777899999999996 567999999999999999999999999999999999977 7889999999977632    1122


Q ss_pred             ccCCChhhH---------HHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCe
Q 029613           76 NLGFSAEDR---------TENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        76 ~i~~~~~~~---------~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      .++|.+++.         .+++..            ...+..++...++..    .+..+|+||+|| .+||+++.+|++
T Consensus        80 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~l  159 (274)
T PRK13647         80 KVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDV  159 (274)
T ss_pred             hEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            344444321         122211            012233444555532    377899999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +  +|||||++||+..+..+.+.+++-
T Consensus       160 l--llDEPt~~LD~~~~~~l~~~l~~~  184 (274)
T PRK13647        160 I--VLDEPMAYLDPRGQETLMEILDRL  184 (274)
T ss_pred             E--EEECCCcCCCHHHHHHHHHHHHHH
Confidence            9  999999999999999999998764

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.97  E-value=2.6e-30  Score=203.59  Aligned_cols=148  Identities=22%  Similarity=0.269  Sum_probs=114.1

Q ss_pred             ccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            6 NSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         6 ~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      +++|++++|++  ..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..    ..+..++|
T Consensus         1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (211)
T cd03225           1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL-GPTSGEVLVDGKDLTKLSLKELRRKVGL   79 (211)
T ss_pred             CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEcccCCHHHHHhhceE
Confidence            46899999987  78999999999999999999999999999999999987 7889999999976532    11222333


Q ss_pred             Chhh---------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613           80 SAED---------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVF  133 (190)
Q Consensus        80 ~~~~---------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vl  133 (190)
                      .+++         ..+++..            ...+..++...++.    ..+..+|+||+|| .+||+++.+|+++  +
T Consensus        80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll--l  157 (211)
T cd03225          80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDIL--L  157 (211)
T ss_pred             EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE--E
Confidence            3332         1122211            01122344445543    2367899999999 6999999999999  9


Q ss_pred             eeCCchhhhhcChHHHHHHHHcC
Q 029613          134 MNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       134 lDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |||||++||+..++.+++.+++-
T Consensus       158 lDEPt~~LD~~~~~~~~~~l~~~  180 (211)
T cd03225         158 LDEPTAGLDPAGRRELLELLKKL  180 (211)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999998764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.97  E-value=2.5e-30  Score=207.41  Aligned_cols=149  Identities=21%  Similarity=0.262  Sum_probs=115.1

Q ss_pred             cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------ccccc
Q 029613            5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------GLNKN   76 (190)
Q Consensus         5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~~~~~   76 (190)
                      ++++|++++|++ ..+++++||++.+|++++|+||||||||||+++|+|++ ++.+|+|.++|.++..       .....
T Consensus         1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~   79 (241)
T cd03256           1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV-EPTSGSVLIDGTDINKLKGKALRQLRRQ   79 (241)
T ss_pred             CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEEECCEeccccCHhHHHHHHhc
Confidence            468899999987 78999999999999999999999999999999999977 7789999999976532       11223


Q ss_pred             cCCChhh--------HHHHHHH--------------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHh
Q 029613           77 LGFSAED--------RTENIRR--------------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAM  123 (190)
Q Consensus        77 i~~~~~~--------~~~~~~~--------------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iaral  123 (190)
                      ++|.+++        ..+++..                    ...+..++...++..    .+..||+||+|| .+||++
T Consensus        80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al  159 (241)
T cd03256          80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL  159 (241)
T ss_pred             cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence            3333332        1222210                    012223444455532    367799999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||+..++.+++.+++.
T Consensus       160 ~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~  190 (241)
T cd03256         160 MQQPKLI--LADEPVASLDPASSRQVMDLLKRI  190 (241)
T ss_pred             hcCCCEE--EEeCccccCCHHHHHHHHHHHHHH
Confidence            9999999  999999999999999999988864

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.97  E-value=2.4e-30  Score=204.19  Aligned_cols=147  Identities=20%  Similarity=0.248  Sum_probs=112.4

Q ss_pred             ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh--
Q 029613            6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED--   83 (190)
Q Consensus         6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~--   83 (190)
                      +++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. .+..++|.+++  
T Consensus         1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~-~~~~i~~v~q~~~   78 (213)
T cd03235           1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL-KPTSGSIRVFGKPLEK-ERKRIGYVPQRRS   78 (213)
T ss_pred             CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCccHHH-HHhheEEeccccc
Confidence            4689999998888999999999999999999999999999999999977 7889999999976421 11112221111  


Q ss_pred             --------HHHHHHH----------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613           84 --------RTENIRR----------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFM  134 (190)
Q Consensus        84 --------~~~~~~~----------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vll  134 (190)
                              ..+++..                -..+..++...++.    ..+..+|+||+|| .+||+++.+|+++  +|
T Consensus        79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll--ll  156 (213)
T cd03235          79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLL--LL  156 (213)
T ss_pred             cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE--EE
Confidence                    1111110                01223344444443    2367899999999 6999999999999  99


Q ss_pred             eCCchhhhhcChHHHHHHHHcC
Q 029613          135 NMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       135 DEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ||||++||+..++.+.+.+++-
T Consensus       157 DEPt~~LD~~~~~~l~~~l~~~  178 (213)
T cd03235         157 DEPFAGVDPKTQEDIYELLREL  178 (213)
T ss_pred             eCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999998864

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.97  E-value=1.7e-30  Score=222.35  Aligned_cols=152  Identities=16%  Similarity=0.228  Sum_probs=118.8

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      +||+++|++++|+++.+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++..    ..+..++
T Consensus         2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll-~p~sG~I~l~G~~i~~~~~~~~~~~ig   80 (402)
T PRK09536          2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTL-TPTAGTVLVAGDDVEALSARAASRRVA   80 (402)
T ss_pred             ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC-CCCCcEEEECCEEcCcCCHHHHhcceE
Confidence            3789999999999999999999999999999999999999999999999987 7889999999977542    1122233


Q ss_pred             CChhh--------HHHHHH----------------HHHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCe
Q 029613           79 FSAED--------RTENIR----------------RVGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        79 ~~~~~--------~~~~~~----------------~~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      +.+++        ..+++.                .-..+...+...++..    .+..||+||+|| .+||+++++|++
T Consensus        81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~i  160 (402)
T PRK09536         81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV  160 (402)
T ss_pred             EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            33332        111110                0112334445555532    367899999999 599999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      +  +|||||++||+..+..+.+.+++..
T Consensus       161 L--LLDEPtsgLD~~~~~~l~~lL~~l~  186 (402)
T PRK09536        161 L--LLDEPTASLDINHQVRTLELVRRLV  186 (402)
T ss_pred             E--EEECCcccCCHHHHHHHHHHHHHHH
Confidence            9  9999999999999999998888643

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.97  E-value=1.4e-30  Score=206.52  Aligned_cols=149  Identities=14%  Similarity=0.204  Sum_probs=115.1

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCCh
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFSA   81 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~~   81 (190)
                      ++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..   .....++|.+
T Consensus         1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (220)
T cd03265           1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL-KPTSGRATVAGHDVVREPREVRRRIGIVF   79 (220)
T ss_pred             CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEecCcChHHHhhcEEEec
Confidence            46889999998888999999999999999999999999999999999977 7889999999876531   1112233333


Q ss_pred             hh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613           82 ED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNM  136 (190)
Q Consensus        82 ~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDE  136 (190)
                      ++        ..+++..            ...+..++..+++..    .+..||+||+|| .+||+++.+|+++  +|||
T Consensus        80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ll--llDE  157 (220)
T cd03265          80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVL--FLDE  157 (220)
T ss_pred             CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEcC
Confidence            22        1122111            012233445555532    367799999999 6999999999999  9999


Q ss_pred             CchhhhhcChHHHHHHHHcC
Q 029613          137 PLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       137 P~~~ld~~~~~~~~~~~~~~  156 (190)
                      ||++||+..++.+++.+++.
T Consensus       158 Pt~~LD~~~~~~l~~~l~~~  177 (220)
T cd03265         158 PTIGLDPQTRAHVWEYIEKL  177 (220)
T ss_pred             CccCCCHHHHHHHHHHHHHH
Confidence            99999999999999988764

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.97  E-value=2.5e-30  Score=203.36  Aligned_cols=149  Identities=18%  Similarity=0.180  Sum_probs=115.6

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCChh
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSAE   82 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~~   82 (190)
                      ++++|++++|++.++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..  .....++|.++
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q   79 (208)
T cd03268           1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI-KPDSGEITFDGKSYQKNIEALRRIGALIE   79 (208)
T ss_pred             CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCCcccchHHHHhhEEEecC
Confidence            46889999998888999999999999999999999999999999999987 7889999999987532  11122333332


Q ss_pred             h--------HHHHHHHH--------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhh
Q 029613           83 D--------RTENIRRV--------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELC  141 (190)
Q Consensus        83 ~--------~~~~~~~~--------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~l  141 (190)
                      +        ..+++...        ..+..++...++..    .+..+|+||+|| .+||+++.+|+++  +|||||++|
T Consensus        80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll--llDEPt~~L  157 (208)
T cd03268          80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLL--ILDEPTNGL  157 (208)
T ss_pred             CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEE--EECCCcccC
Confidence            2        22222111        12333444455532    367799999999 6999999999999  999999999


Q ss_pred             hhcChHHHHHHHHcC
Q 029613          142 EARDPKGLYKLARAG  156 (190)
Q Consensus       142 d~~~~~~~~~~~~~~  156 (190)
                      |+..++.+++.+++-
T Consensus       158 D~~~~~~l~~~l~~~  172 (208)
T cd03268         158 DPDGIKELRELILSL  172 (208)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999888864

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.97  E-value=2.5e-30  Score=208.70  Aligned_cols=152  Identities=22%  Similarity=0.209  Sum_probs=117.7

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---------
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---------   71 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---------   71 (190)
                      |. |++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..         
T Consensus         1 m~-~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~   78 (250)
T PRK11264          1 MS-AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE-QPEAGTIRVGDITIDTARSLSQQKG   78 (250)
T ss_pred             CC-cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccccccchhh
Confidence            53 789999999998888999999999999999999999999999999999977 7889999999876531         


Q ss_pred             ---ccccccCCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHH
Q 029613           72 ---GLNKNLGFSAED--------RTENIRR-------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRA  122 (190)
Q Consensus        72 ---~~~~~i~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iara  122 (190)
                         ..+..++|.+++        ..+++..             -..+..++...++..    .+..+|+||+|| .+||+
T Consensus        79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~a  158 (250)
T PRK11264         79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARA  158 (250)
T ss_pred             HHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHH
Confidence               111223333322        1222211             011233445555532    367799999999 69999


Q ss_pred             hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++.+|+++  +|||||++||...++.+++.+++.
T Consensus       159 l~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~  190 (250)
T PRK11264        159 LAMRPEVI--LFDEPTSALDPELVGEVLNTIRQL  190 (250)
T ss_pred             HhcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence            99999999  999999999999999999888764

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.7e-30  Score=218.77  Aligned_cols=150  Identities=20%  Similarity=0.229  Sum_probs=117.3

Q ss_pred             ccccCcceeccC----ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------c
Q 029613            4 VGNSTNIFWQES----PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------G   72 (190)
Q Consensus         4 ~l~~~~l~~~~~----~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~   72 (190)
                      ||+++|++++|+    .+.+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++..       .
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~   79 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE-RPTSGRVLVDGQDLTALSEKELRK   79 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCcCCHHHHHH
Confidence            578999999997    367999999999999999999999999999999999987 7889999999987642       1


Q ss_pred             cccccCCChhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613           73 LNKNLGFSAED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        73 ~~~~i~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~  127 (190)
                      .+..++|.+++        ..+++...            ..+..++...++..    .+..||+||+|| .+||+++.+|
T Consensus        80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p  159 (343)
T PRK11153         80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP  159 (343)
T ss_pred             HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence            12234443332        22222111            12233455555532    367899999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++  +|||||++||+..++.+++.+++-
T Consensus       160 ~iL--lLDEPts~LD~~~~~~l~~~L~~l  186 (343)
T PRK11153        160 KVL--LCDEATSALDPATTRSILELLKDI  186 (343)
T ss_pred             CEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            999  999999999999999999988764

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.1e-30  Score=210.08  Aligned_cols=149  Identities=17%  Similarity=0.207  Sum_probs=115.2

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED   83 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~   83 (190)
                      |++++|++++|++..+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++... ...++|.+++
T Consensus         1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~-~~~~~~v~q~   78 (255)
T PRK11248          1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV-PYQHGSITLDGKPVEGP-GAERGVVFQN   78 (255)
T ss_pred             CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCC-CCcEEEEeCC
Confidence            478999999998888999999999999999999999999999999999977 78899999998765321 1111221111


Q ss_pred             --------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613           84 --------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL  138 (190)
Q Consensus        84 --------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~  138 (190)
                              ..+++..            ...+..++...++..    .+..||+||+|| .+||+++.+|+++  +|||||
T Consensus        79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~ll--lLDEPt  156 (255)
T PRK11248         79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL--LLDEPF  156 (255)
T ss_pred             CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCC
Confidence                    1222211            012334455555532    367799999999 6999999999999  999999


Q ss_pred             hhhhhcChHHHHHHHHcC
Q 029613          139 ELCEARDPKGLYKLARAG  156 (190)
Q Consensus       139 ~~ld~~~~~~~~~~~~~~  156 (190)
                      ++||+..++.+.+.+++-
T Consensus       157 ~~LD~~~~~~l~~~L~~~  174 (255)
T PRK11248        157 GALDAFTREQMQTLLLKL  174 (255)
T ss_pred             ccCCHHHHHHHHHHHHHH
Confidence            999999999999888763

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=3.6e-30  Score=195.08  Aligned_cols=149  Identities=19%  Similarity=0.217  Sum_probs=112.0

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCC---C
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGF---S   80 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~---~   80 (190)
                      .|+++|+.|+||...+|+++|++.++|+++.|+|.|||||||++|||+= +..|..|.|.++|+.+.......-..   +
T Consensus         6 ~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~-LE~P~~G~I~v~geei~~k~~~~G~l~~ad   84 (256)
T COG4598           6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINF-LEKPSAGSIRVNGEEIRLKRDKDGQLKPAD   84 (256)
T ss_pred             ceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHh-hcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence            5889999999999999999999999999999999999999999999986 55899999999998875422111111   1


Q ss_pred             hhhHHHHHH-----------------------------------HHHHHHHHHHHcCcc----eeecccCccHHHH-HHH
Q 029613           81 AEDRTENIR-----------------------------------RVGEVAKLFADAGLI----CIASLISPYRKDR-DAC  120 (190)
Q Consensus        81 ~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~ia  120 (190)
                      .++......                                   .+.+....+...|+.    .++..+||||+|| +||
T Consensus        85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA  164 (256)
T COG4598          85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA  164 (256)
T ss_pred             HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence            111111000                                   011112233334442    3688999999999 599


Q ss_pred             HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      |||+.+|+++  ++|||||+||+..+-.++..+++
T Consensus       165 RaLameP~vm--LFDEPTSALDPElVgEVLkv~~~  197 (256)
T COG4598         165 RALAMEPEVM--LFDEPTSALDPELVGEVLKVMQD  197 (256)
T ss_pred             HHHhcCCceE--eecCCcccCCHHHHHHHHHHHHH
Confidence            9999999999  99999999999987666655554

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.96  E-value=1.9e-30  Score=219.20  Aligned_cols=150  Identities=21%  Similarity=0.214  Sum_probs=118.2

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCCh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSA   81 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~   81 (190)
                      +|+++|++++|++..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|+++..  .....++|.+
T Consensus         2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~i~g~~i~~~~~~~r~i~~v~   80 (353)
T PRK10851          2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE-HQTSGHIRFHGTDVSRLHARDRKVGFVF   80 (353)
T ss_pred             EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence            588999999999888999999999999999999999999999999999977 7889999999987642  1112233333


Q ss_pred             hh--------HHHHHHH----------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613           82 ED--------RTENIRR----------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEV  132 (190)
Q Consensus        82 ~~--------~~~~~~~----------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~v  132 (190)
                      ++        ..+++..                ...+..++...++..    .+..||+||+|| ++||+++.+|+++  
T Consensus        81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~ll--  158 (353)
T PRK10851         81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQIL--  158 (353)
T ss_pred             cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE--
Confidence            32        1222211                112334455555532    477899999999 6999999999999  


Q ss_pred             EeeCCchhhhhcChHHHHHHHHcC
Q 029613          133 FMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       133 llDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +|||||++||...++.+.+.+++.
T Consensus       159 LLDEP~s~LD~~~r~~l~~~L~~l  182 (353)
T PRK10851        159 LLDEPFGALDAQVRKELRRWLRQL  182 (353)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999888763

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.96  E-value=2.3e-30  Score=210.10  Aligned_cols=150  Identities=18%  Similarity=0.142  Sum_probs=116.0

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChh
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE   82 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~   82 (190)
                      ++|+++|++++|++..+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.. ....++|.++
T Consensus        11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~-~~~~i~~v~q   88 (257)
T PRK11247         11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE-TPSAGELLAGTAPLAE-AREDTRLMFQ   88 (257)
T ss_pred             CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEHHH-hhCceEEEec
Confidence            3689999999999888999999999999999999999999999999999977 7889999998865421 1111222211


Q ss_pred             --------hHHHHHHH------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhh
Q 029613           83 --------DRTENIRR------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEA  143 (190)
Q Consensus        83 --------~~~~~~~~------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~  143 (190)
                              ...+++..      -..+..++...++..    .+..||+||+|| .+||+++.+|+++  +|||||++||+
T Consensus        89 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ll--lLDEPt~~LD~  166 (257)
T PRK11247         89 DARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLL--LLDEPLGALDA  166 (257)
T ss_pred             CccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCCCCCCH
Confidence                    12222221      112334455555532    367899999999 6999999999999  99999999999


Q ss_pred             cChHHHHHHHHcC
Q 029613          144 RDPKGLYKLARAG  156 (190)
Q Consensus       144 ~~~~~~~~~~~~~  156 (190)
                      ..++.+++.+++.
T Consensus       167 ~~~~~l~~~L~~~  179 (257)
T PRK11247        167 LTRIEMQDLIESL  179 (257)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998888753

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.1e-30  Score=220.15  Aligned_cols=152  Identities=16%  Similarity=0.114  Sum_probs=118.5

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccC
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLG   78 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~   78 (190)
                      |+ +++++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++...  ....++
T Consensus         1 m~-~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~-~p~~G~I~~~g~~i~~~~~~~~~i~   78 (369)
T PRK11000          1 MA-SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-DITSGDLFIGEKRMNDVPPAERGVG   78 (369)
T ss_pred             CC-EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCCCCHhHCCEE
Confidence            53 689999999999888999999999999999999999999999999999977 78899999999776321  112233


Q ss_pred             CChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613           79 FSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVF  133 (190)
Q Consensus        79 ~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vl  133 (190)
                      |.+++        ..+++..            ...+..++...++..    .+..||+||+|| ++||+++.+|+++  +
T Consensus        79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lL--L  156 (369)
T PRK11000         79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF--L  156 (369)
T ss_pred             EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE--E
Confidence            33332        2222221            012334455555532    367899999999 6999999999999  9


Q ss_pred             eeCCchhhhhcChHHHHHHHHcC
Q 029613          134 MNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       134 lDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |||||++||...++.+.+.+++.
T Consensus       157 LDEPts~LD~~~~~~l~~~L~~l  179 (369)
T PRK11000        157 LDEPLSNLDAALRVQMRIEISRL  179 (369)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999888887753

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=2.9e-30  Score=202.64  Aligned_cols=150  Identities=17%  Similarity=0.193  Sum_probs=116.1

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFS   80 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~   80 (190)
                      |++++|++++|++.++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..   .....++|.
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~v~~~g~~~~~~~~~~~~~~~~~   79 (204)
T PRK13538          1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA-RPDAGEVLWQGEPIRRQRDEYHQDLLYL   79 (204)
T ss_pred             CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEcccchHHhhhheEEe
Confidence            478999999999888999999999999999999999999999999999977 7889999999976532   111112222


Q ss_pred             hh--------hHHHHHHHH---------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613           81 AE--------DRTENIRRV---------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL  138 (190)
Q Consensus        81 ~~--------~~~~~~~~~---------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~  138 (190)
                      ++        ...+++...         ..+..++...++..    .+..+|+||+|| .+||+++.+|+++  +|||||
T Consensus        80 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll--llDEPt  157 (204)
T PRK13538         80 GHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLW--ILDEPF  157 (204)
T ss_pred             CCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEE--EEeCCC
Confidence            11        122222111         12233445555532    367799999999 6999999999999  999999


Q ss_pred             hhhhhcChHHHHHHHHcC
Q 029613          139 ELCEARDPKGLYKLARAG  156 (190)
Q Consensus       139 ~~ld~~~~~~~~~~~~~~  156 (190)
                      ++||...++.+++.+++-
T Consensus       158 ~~LD~~~~~~l~~~l~~~  175 (204)
T PRK13538        158 TAIDKQGVARLEALLAQH  175 (204)
T ss_pred             ccCCHHHHHHHHHHHHHH
Confidence            999999999999988864

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.96  E-value=3.5e-30  Score=203.09  Aligned_cols=149  Identities=15%  Similarity=0.123  Sum_probs=114.9

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccCCChh
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLGFSAE   82 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~~~~~   82 (190)
                      ++++|+++.|++.++++++||++++|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++...  ....++|.++
T Consensus         1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~v~~~g~~~~~~~~~~~~i~~~~q   79 (213)
T cd03301           1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE-EPTSGRIYIGGRDVTDLPPKDRDIAMVFQ   79 (213)
T ss_pred             CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCCcccceEEEEec
Confidence            46889999998888999999999999999999999999999999999977 78899999999765321  1112333322


Q ss_pred             h--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613           83 D--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMP  137 (190)
Q Consensus        83 ~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP  137 (190)
                      +        ..+++..            ...+..++...++..    .+..+|+||+|| .+||+++.+|+++  +||||
T Consensus        80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll--llDEP  157 (213)
T cd03301          80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVF--LMDEP  157 (213)
T ss_pred             ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEcCC
Confidence            2        1122211            012233445555532    367799999999 6999999999999  99999


Q ss_pred             chhhhhcChHHHHHHHHcC
Q 029613          138 LELCEARDPKGLYKLARAG  156 (190)
Q Consensus       138 ~~~ld~~~~~~~~~~~~~~  156 (190)
                      |++||+..++.+++.+++.
T Consensus       158 t~~LD~~~~~~l~~~l~~~  176 (213)
T cd03301         158 LSNLDAKLRVQMRAELKRL  176 (213)
T ss_pred             cccCCHHHHHHHHHHHHHH
Confidence            9999999999999988764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.96  E-value=3.8e-30  Score=203.84  Aligned_cols=149  Identities=19%  Similarity=0.207  Sum_probs=114.9

Q ss_pred             cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCC
Q 029613            5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~   79 (190)
                      |+++|+++.|++  +++++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..   .....++|
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~i~~   79 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL-RPTSGTAYINGYSIRTDRKAARQSLGY   79 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccchHHHhhhEEE
Confidence            468899999986  78999999999999999999999999999999999977 7889999999977532   11122333


Q ss_pred             Chhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613           80 SAED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFM  134 (190)
Q Consensus        80 ~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vll  134 (190)
                      .+++        ..+++...            ..+..++...++..    .+..+|+||+|| .+||+++.+|+++  +|
T Consensus        80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll--ll  157 (220)
T cd03263          80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVL--LL  157 (220)
T ss_pred             ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEE--EE
Confidence            3322        12222110            12233444455532    367799999999 6999999999999  99


Q ss_pred             eCCchhhhhcChHHHHHHHHcC
Q 029613          135 NMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       135 DEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ||||++||+..++.+++.+++-
T Consensus       158 DEP~~~LD~~~~~~l~~~l~~~  179 (220)
T cd03263         158 DEPTSGLDPASRRAIWDLILEV  179 (220)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999998864

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=3.6e-30  Score=202.59  Aligned_cols=150  Identities=18%  Similarity=0.185  Sum_probs=115.9

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-cccccCCChh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-LNKNLGFSAE   82 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-~~~~i~~~~~   82 (190)
                      |++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++... .+..++|.++
T Consensus         2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (207)
T PRK13539          2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL-PPAAGTIKLDGGDIDDPDVAEACHYLGH   80 (207)
T ss_pred             EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEeCcchhhHhhcEEecC
Confidence            689999999998888999999999999999999999999999999999977 78899999999764211 1112222221


Q ss_pred             --------hHHHHHHHH--------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhh
Q 029613           83 --------DRTENIRRV--------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELC  141 (190)
Q Consensus        83 --------~~~~~~~~~--------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~l  141 (190)
                              ...+++...        ..+..++...++..    .+..+|+||+|| .+||+++.+|+++  +|||||++|
T Consensus        81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll--llDEPt~~L  158 (207)
T PRK13539         81 RNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIW--ILDEPTAAL  158 (207)
T ss_pred             CCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEE--EEeCCcccC
Confidence                    112222110        12334445555532    356799999999 6999999999999  999999999


Q ss_pred             hhcChHHHHHHHHcC
Q 029613          142 EARDPKGLYKLARAG  156 (190)
Q Consensus       142 d~~~~~~~~~~~~~~  156 (190)
                      |...++.+.+.+++-
T Consensus       159 D~~~~~~l~~~l~~~  173 (207)
T PRK13539        159 DAAAVALFAELIRAH  173 (207)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998863

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.96  E-value=3.6e-30  Score=204.09  Aligned_cols=150  Identities=23%  Similarity=0.243  Sum_probs=115.0

Q ss_pred             ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------
Q 029613            4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-------   72 (190)
Q Consensus         4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-------   72 (190)
                      +++++|++++|++    .++++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++...       
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~   79 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD-NPTSGEVLFNGQSLSKLSSNERAK   79 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEhhhcCHhHHHH
Confidence            3678999999964    46999999999999999999999999999999999977 78899999999765320       


Q ss_pred             cc-cccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCC
Q 029613           73 LN-KNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        73 ~~-~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~  126 (190)
                      .+ ..++|.+++        ..+++..            ...+..++...++..    .+..||+||+|| .+||+++.+
T Consensus        80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  159 (221)
T TIGR02211        80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQ  159 (221)
T ss_pred             HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence            01 223333322        1222211            012233445555532    367899999999 699999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+++  +|||||++||...++.+.+.+++.
T Consensus       160 p~il--llDEPt~~LD~~~~~~l~~~l~~~  187 (221)
T TIGR02211       160 PSLV--LADEPTGNLDNNNAKIIFDLMLEL  187 (221)
T ss_pred             CCEE--EEeCCCCcCCHHHHHHHHHHHHHH
Confidence            9999  999999999999999999988754

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.96  E-value=2.8e-30  Score=203.67  Aligned_cols=153  Identities=20%  Similarity=0.224  Sum_probs=116.2

Q ss_pred             cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------ccccc
Q 029613            5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------GLNKN   76 (190)
Q Consensus         5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~~~~~   76 (190)
                      ++++|++++|++ +.+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..       ..+..
T Consensus         1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~   79 (214)
T cd03292           1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE-LPTSGTIRVNGQDVSDLRGRAIPYLRRK   79 (214)
T ss_pred             CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcccCCHHHHHHHHHh
Confidence            467899999964 67999999999999999999999999999999999977 7889999999976532       11222


Q ss_pred             cCCChhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEE
Q 029613           77 LGFSAED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIE  131 (190)
Q Consensus        77 i~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~  131 (190)
                      ++|.+++        ..+++...            ..+..++...++..    .+..+|+||+|| .+||+++.+|+++ 
T Consensus        80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll-  158 (214)
T cd03292          80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTIL-  158 (214)
T ss_pred             eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEE-
Confidence            3333332        12222110            12233444555432    367799999999 6999999999999 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          132 VFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                       +|||||++||+..++.+++.+++...+|
T Consensus       159 -llDEPt~~LD~~~~~~~~~~l~~~~~~~  186 (214)
T cd03292         159 -IADEPTGNLDPDTTWEIMNLLKKINKAG  186 (214)
T ss_pred             -EEeCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence             9999999999999999999998743334

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=4.8e-30  Score=200.86  Aligned_cols=150  Identities=15%  Similarity=0.164  Sum_probs=116.1

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccCCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLGFS   80 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~~~   80 (190)
                      |++++|++++|++.++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|+++|.++...   ....++|.
T Consensus         1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~i~~~   79 (200)
T PRK13540          1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL-NPEKGEILFERQSIKKDLCTYQKQLCFV   79 (200)
T ss_pred             CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeeEEECCCccccCHHHHHhheEEe
Confidence            478999999998888999999999999999999999999999999999977 78899999999876421   12223333


Q ss_pred             hhh--------HHHHHHHH-------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchh
Q 029613           81 AED--------RTENIRRV-------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLEL  140 (190)
Q Consensus        81 ~~~--------~~~~~~~~-------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~  140 (190)
                      +++        ..+++...       ..+..++...++..    .+..+|+|++|| .+||+++.+|+++  +|||||++
T Consensus        80 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~l--ilDEP~~~  157 (200)
T PRK13540         80 GHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLW--LLDEPLVA  157 (200)
T ss_pred             ccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEE--EEeCCCcc
Confidence            221        12222210       12333444444322    256799999999 6999999999999  99999999


Q ss_pred             hhhcChHHHHHHHHcC
Q 029613          141 CEARDPKGLYKLARAG  156 (190)
Q Consensus       141 ld~~~~~~~~~~~~~~  156 (190)
                      ||...++.+.+.+++-
T Consensus       158 LD~~~~~~l~~~l~~~  173 (200)
T PRK13540        158 LDELSLLTIITKIQEH  173 (200)
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            9999999999999864

>PRK10908 cell division protein FtsE; Provisional

Probab=99.96  E-value=3.7e-30  Score=204.34  Aligned_cols=150  Identities=17%  Similarity=0.201  Sum_probs=116.0

Q ss_pred             ccccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------ccc
Q 029613            4 VGNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-------LNK   75 (190)
Q Consensus         4 ~l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-------~~~   75 (190)
                      |++++|+++.| ++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++...       .+.
T Consensus         1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~   79 (222)
T PRK10908          1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE-RPSAGKIWFSGHDITRLKNREVPFLRR   79 (222)
T ss_pred             CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccCChhHHHHHHh
Confidence            47899999999 6678999999999999999999999999999999999977 78899999999765320       122


Q ss_pred             ccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613           76 NLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        76 ~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      .++|.+++        ..+++..            ...+..++...++..    .+..+|+||+|| .+||+++.+|+++
T Consensus        80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  159 (222)
T PRK10908         80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVL  159 (222)
T ss_pred             heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence            23333322        1122211            011233444555432    367899999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +|||||++||+..++.+.+.+++-
T Consensus       160 --llDEPt~~LD~~~~~~l~~~l~~~  183 (222)
T PRK10908        160 --LADEPTGNLDDALSEGILRLFEEF  183 (222)
T ss_pred             --EEeCCCCcCCHHHHHHHHHHHHHH
Confidence              999999999999999999888864

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.96  E-value=4.5e-30  Score=202.40  Aligned_cols=150  Identities=23%  Similarity=0.252  Sum_probs=115.7

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc------ccccccC
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------~~~~~i~   78 (190)
                      ++++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..      ..+..++
T Consensus         1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   79 (213)
T cd03262           1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE-EPDSGTIIIDGLKLTDDKKNINELRQKVG   79 (213)
T ss_pred             CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCccchhHHHHHhcce
Confidence            46889999998888999999999999999999999999999999999977 7889999999976521      1122333


Q ss_pred             CChhh--------HHHHHHH-------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613           79 FSAED--------RTENIRR-------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEV  132 (190)
Q Consensus        79 ~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~v  132 (190)
                      |.+++        ..+++..             ...+..++...++.    ..+..+|+||+|| .+||+++.+|+++  
T Consensus        80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll--  157 (213)
T cd03262          80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVM--  157 (213)
T ss_pred             EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEE--
Confidence            33332        1222211             01223344444543    2367899999999 6999999999999  


Q ss_pred             EeeCCchhhhhcChHHHHHHHHcCC
Q 029613          133 FMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       133 llDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      +|||||++||+..++.+++.+++-.
T Consensus       158 llDEP~~~LD~~~~~~l~~~l~~~~  182 (213)
T cd03262         158 LFDEPTSALDPELVGEVLDVMKDLA  182 (213)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999998643

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3.1e-30  Score=207.32  Aligned_cols=150  Identities=17%  Similarity=0.181  Sum_probs=116.8

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc----------ccc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR----------HGL   73 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~----------~~~   73 (190)
                      +++++|+++.|+++.+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++.          ...
T Consensus         2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (242)
T PRK11124          2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE-MPRSGTLNIAGNHFDFSKTPSDKAIREL   80 (242)
T ss_pred             EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEecccccccchhhHHHH
Confidence            688999999998889999999999999999999999999999999999977 788999999998652          011


Q ss_pred             ccccCCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613           74 NKNLGFSAED--------RTENIRR-------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        74 ~~~i~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~  127 (190)
                      +..++|.+++        ..+++..             ...+..++...++..    .+..+|+||+|| .+||+++.+|
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p  160 (242)
T PRK11124         81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP  160 (242)
T ss_pred             HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            2233433332        1222211             011233444455532    367799999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++  +|||||++||+..++.+++.+++-
T Consensus       161 ~ll--ilDEPt~~LD~~~~~~l~~~l~~~  187 (242)
T PRK11124        161 QVL--LFDEPTAALDPEITAQIVSIIREL  187 (242)
T ss_pred             CEE--EEcCCCCcCCHHHHHHHHHHHHHH
Confidence            999  999999999999999999988864

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.96  E-value=3.5e-30  Score=213.43  Aligned_cols=150  Identities=17%  Similarity=0.215  Sum_probs=119.1

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFS   80 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~   80 (190)
                      +++++|++++|+++.+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..   ..+..++|.
T Consensus         2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~-~~~~G~i~i~g~~~~~~~~~~~~~ig~~   80 (301)
T TIGR03522         2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL-PPDSGSVQVCGEDVLQNPKEVQRNIGYL   80 (301)
T ss_pred             EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccChHHHHhceEEe
Confidence            478999999999889999999999999999999999999999999999977 7889999999977632   122234444


Q ss_pred             hhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613           81 AED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMN  135 (190)
Q Consensus        81 ~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllD  135 (190)
                      +++        ..+++...            ..+..++..+++..    .+..+|+||+|| .+|++++.+|+++  +||
T Consensus        81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll--iLD  158 (301)
T TIGR03522        81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVL--ILD  158 (301)
T ss_pred             cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEE--EEc
Confidence            432        22222211            12333444555532    367799999999 6999999999999  999


Q ss_pred             CCchhhhhcChHHHHHHHHcC
Q 029613          136 MPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       136 EP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |||++||+..++.+++.+++-
T Consensus       159 EPt~gLD~~~~~~l~~~l~~~  179 (301)
T TIGR03522       159 EPTTGLDPNQLVEIRNVIKNI  179 (301)
T ss_pred             CCcccCCHHHHHHHHHHHHHh
Confidence            999999999999999999874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.96  E-value=3.7e-30  Score=205.91  Aligned_cols=149  Identities=19%  Similarity=0.203  Sum_probs=115.1

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCC
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~   79 (190)
                      ++++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++...     .+..++|
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (236)
T cd03219           1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL-RPTSGSVLFDGEDITGLPPHEIARLGIGR   79 (236)
T ss_pred             CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence            46889999998888999999999999999999999999999999999987 78899999999765321     1112333


Q ss_pred             Chhh--------HHHHHHH----------------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhC
Q 029613           80 SAED--------RTENIRR----------------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAML  124 (190)
Q Consensus        80 ~~~~--------~~~~~~~----------------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall  124 (190)
                      .+++        ..+++..                      -..+..++...++..    .+..+|+||+|| .+||+++
T Consensus        80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~  159 (236)
T cd03219          80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA  159 (236)
T ss_pred             EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh
Confidence            3322        1122111                      012233444455532    367799999999 6999999


Q ss_pred             CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+|+++  +|||||++||...++.+++.+++-
T Consensus       160 ~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~  189 (236)
T cd03219         160 TDPKLL--LLDEPAAGLNPEETEELAELIREL  189 (236)
T ss_pred             cCCCEE--EEcCCcccCCHHHHHHHHHHHHHH
Confidence            999999  999999999999999999999864

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.6e-30  Score=210.72  Aligned_cols=153  Identities=19%  Similarity=0.235  Sum_probs=120.0

Q ss_pred             CCcccccCcceeccCc------cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---
Q 029613            1 MATVGNSTNIFWQESP------IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---   71 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~------~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---   71 (190)
                      |++|++++|++++|++      +.+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..   
T Consensus         1 ~~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~i~g~~i~~~~~   79 (280)
T PRK13633          1 MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL-IPSEGKVYVDGLDTSDEEN   79 (280)
T ss_pred             CCceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEecccccc
Confidence            8889999999999963      46999999999999999999999999999999999987 7889999999977642   


Q ss_pred             --ccccccCCChhhH---------HHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHh
Q 029613           72 --GLNKNLGFSAEDR---------TENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAM  123 (190)
Q Consensus        72 --~~~~~i~~~~~~~---------~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iaral  123 (190)
                        ..+..++|.+++.         .+++..            -..+..++...++..    .+..||+||+|| .+||++
T Consensus        80 ~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral  159 (280)
T PRK13633         80 LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL  159 (280)
T ss_pred             HHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence              1122344444321         111110            011233444455533    377899999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||+..++.+.+.+++-
T Consensus       160 ~~~p~ll--llDEPt~gLD~~~~~~l~~~l~~l  190 (280)
T PRK13633        160 AMRPECI--IFDEPTAMLDPSGRREVVNTIKEL  190 (280)
T ss_pred             HcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999  999999999999999999998864

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.96  E-value=4.6e-30  Score=205.65  Aligned_cols=150  Identities=19%  Similarity=0.228  Sum_probs=115.9

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccCCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLGFS   80 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~~~   80 (190)
                      |++++|++++|++..+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++...   ....++|.
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~i~~~~~~~~~~i~~~   79 (236)
T TIGR03864         1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY-VAQEGQISVAGHDLRRAPRAALARLGVV   79 (236)
T ss_pred             CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEcccCChhhhhhEEEe
Confidence            478999999998888999999999999999999999999999999999977 78899999999765321   11122332


Q ss_pred             hhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613           81 AED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMN  135 (190)
Q Consensus        81 ~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllD  135 (190)
                      +++        ..+++..            ...+..++...++..    .+..+|+||+|| .+||+++.+|+++  +||
T Consensus        80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ll--llD  157 (236)
T TIGR03864        80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALL--LLD  157 (236)
T ss_pred             CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE--EEc
Confidence            222        1222211            012233444455532    367799999999 6999999999999  999


Q ss_pred             CCchhhhhcChHHHHHHHHcC
Q 029613          136 MPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       136 EP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |||++||+..++.+++.+++.
T Consensus       158 EP~~~LD~~~~~~l~~~l~~~  178 (236)
T TIGR03864       158 EPTVGLDPASRAAIVAHVRAL  178 (236)
T ss_pred             CCccCCCHHHHHHHHHHHHHH
Confidence            999999999999999988764

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2e-30  Score=211.86  Aligned_cols=151  Identities=16%  Similarity=0.174  Sum_probs=117.1

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc------cccccc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------GLNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------~~~~~i   77 (190)
                      |++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..      ..+..+
T Consensus         1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~i   79 (271)
T PRK13638          1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL-RPQKGAVLWQGKPLDYSKRGLLALRQQV   79 (271)
T ss_pred             CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCccEEEECCEEcccccCCHHHHHhhe
Confidence            578999999998888999999999999999999999999999999999987 7889999999987631      112234


Q ss_pred             CCChhhH---------HHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEE
Q 029613           78 GFSAEDR---------TENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIE  131 (190)
Q Consensus        78 ~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~  131 (190)
                      +|.+++.         .+++...            ..+...+...++..    .+..+|+||+|| .+||+++.+|+++ 
T Consensus        80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~ll-  158 (271)
T PRK13638         80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYL-  158 (271)
T ss_pred             EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEE-
Confidence            4443321         1111110            11223344444422    367899999999 6999999999999 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          132 VFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                       +|||||++||+..++.+++.+++..
T Consensus       159 -lLDEPt~~LD~~~~~~l~~~l~~~~  183 (271)
T PRK13638        159 -LLDEPTAGLDPAGRTQMIAIIRRIV  183 (271)
T ss_pred             -EEeCCcccCCHHHHHHHHHHHHHHH
Confidence             9999999999999999999988643

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.9e-30  Score=210.46  Aligned_cols=153  Identities=18%  Similarity=0.213  Sum_probs=119.0

Q ss_pred             CCcccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cc
Q 029613            1 MATVGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GL   73 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~   73 (190)
                      |.+|++++|++++|+.   ..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|+++|.++..    ..
T Consensus         1 ~~~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~   79 (279)
T PRK13650          1 MSNIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL-EAESGQIIIDGDLLTEENVWDI   79 (279)
T ss_pred             CCceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECCcCcHHHH
Confidence            6678999999999963   45999999999999999999999999999999999987 7889999999987632    12


Q ss_pred             ccccCCChhhH---------HHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613           74 NKNLGFSAEDR---------TENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        74 ~~~i~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~  127 (190)
                      +..++|.+++.         .+++...            ..+..++...++..    .+..+|+||+|| .+||+++.+|
T Consensus        80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p  159 (279)
T PRK13650         80 RHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRP  159 (279)
T ss_pred             HhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            22344433321         1222110            11233444555532    367899999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++  +|||||++||+..++.+.+.+++-
T Consensus       160 ~lL--lLDEPt~~LD~~~~~~l~~~l~~l  186 (279)
T PRK13650        160 KII--ILDEATSMLDPEGRLELIKTIKGI  186 (279)
T ss_pred             CEE--EEECCcccCCHHHHHHHHHHHHHH
Confidence            999  999999999999999999888764

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.6e-30  Score=219.92  Aligned_cols=150  Identities=16%  Similarity=0.161  Sum_probs=118.0

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCC
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFS   80 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~   80 (190)
                      ++|+++|++++|++..+++++||++++|++++|+||||||||||+|+|+|+. ++.+|+|.++|+++..  ..+..++|.
T Consensus        18 ~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~v   96 (377)
T PRK11607         18 PLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE-QPTAGQIMLDGVDLSHVPPYQRPINMM   96 (377)
T ss_pred             ceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHCCEEEE
Confidence            4789999999999888999999999999999999999999999999999977 7889999999987632  112233443


Q ss_pred             hhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613           81 AED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMN  135 (190)
Q Consensus        81 ~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllD  135 (190)
                      .++        ..+++..            -..+..++...++..    .+..||+||+|| ++||+++.+|+++  +||
T Consensus        97 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lL--LLD  174 (377)
T PRK11607         97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLL--LLD  174 (377)
T ss_pred             eCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE--EEe
Confidence            332        2233221            012334455555532    477899999999 6999999999999  999


Q ss_pred             CCchhhhhcChHHHHHHHHc
Q 029613          136 MPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       136 EP~~~ld~~~~~~~~~~~~~  155 (190)
                      ||+++||...++.+.+.+++
T Consensus       175 EP~s~LD~~~r~~l~~~l~~  194 (377)
T PRK11607        175 EPMGALDKKLRDRMQLEVVD  194 (377)
T ss_pred             CCcccCCHHHHHHHHHHHHH
Confidence            99999999999888866654

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.96  E-value=6.3e-30  Score=200.62  Aligned_cols=147  Identities=22%  Similarity=0.177  Sum_probs=113.9

Q ss_pred             cCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--------ccccccC
Q 029613            7 STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--------GLNKNLG   78 (190)
Q Consensus         7 ~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--------~~~~~i~   78 (190)
                      ++|+++.|++.++++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++..        .....++
T Consensus         1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~   79 (206)
T TIGR03608         1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE-KFDSGQVYLNGKETPPLNSKKASKFRREKLG   79 (206)
T ss_pred             CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence            478999998888999999999999999999999999999999999977 7889999999987421        0112233


Q ss_pred             CChhh--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613           79 FSAED--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVF  133 (190)
Q Consensus        79 ~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vl  133 (190)
                      |.+++        ..+++..            ...+..++...++.    ..+..+|+||+|| .+||+++.+|+++  +
T Consensus        80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~ll--l  157 (206)
T TIGR03608        80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLI--L  157 (206)
T ss_pred             EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEE--E
Confidence            33322        1122211            11233445555553    2367799999999 6999999999999  9


Q ss_pred             eeCCchhhhhcChHHHHHHHHcC
Q 029613          134 MNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       134 lDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |||||++||+..++.+++.+++-
T Consensus       158 lDEPt~~LD~~~~~~l~~~l~~~  180 (206)
T TIGR03608       158 ADEPTGSLDPKNRDEVLDLLLEL  180 (206)
T ss_pred             EeCCcCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999864

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.96  E-value=7.7e-30  Score=203.07  Aligned_cols=150  Identities=19%  Similarity=0.177  Sum_probs=115.4

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh----hCCCcEEEEcCccccc------ccc
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY----SRGKLSYILDGDNLRH------GLN   74 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~----~~~~g~i~~~g~~~~~------~~~   74 (190)
                      |+++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++.    ++.+|+|.++|.++..      ..+
T Consensus         1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (227)
T cd03260           1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR   80 (227)
T ss_pred             CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence            468999999988889999999999999999999999999999999999762    5678999999977532      112


Q ss_pred             cccCCChhh-------HHHHHHH-------------HHHHHHHHHHcCcce----e--ecccCccHHHH-HHHHHhCCCC
Q 029613           75 KNLGFSAED-------RTENIRR-------------VGEVAKLFADAGLIC----I--ASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        75 ~~i~~~~~~-------~~~~~~~-------------~~~~~~~~~~~~~~~----~--~~~lS~g~kqr-~iarall~~~  127 (190)
                      ..++|.+++       ..+++..             -..+..++...++..    .  +..+|+||+|| .+||+++.+|
T Consensus        81 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p  160 (227)
T cd03260          81 RRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEP  160 (227)
T ss_pred             hhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCC
Confidence            233333332       1222211             012233444455532    2  47899999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++  +|||||++||+..++.+++.+++-
T Consensus       161 ~ll--llDEPt~~LD~~~~~~l~~~l~~~  187 (227)
T cd03260         161 EVL--LLDEPTSALDPISTAKIEELIAEL  187 (227)
T ss_pred             CEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence            999  999999999999999999999864

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=6.8e-30  Score=206.55  Aligned_cols=154  Identities=20%  Similarity=0.141  Sum_probs=118.1

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc-----
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH-----   71 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~-----   71 (190)
                      |.++++++|++++|++.++++++||++.+|++++|+|+||||||||+++|+|++.+    +.+|.|.++|.++..     
T Consensus         1 ~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   80 (253)
T PRK14267          1 MKFAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP   80 (253)
T ss_pred             CcceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence            66789999999999888899999999999999999999999999999999998732    248999999987631     


Q ss_pred             -ccccccCCChhh--------HHHHHHHH--------------HHHHHHHHHcCcc--------eeecccCccHHHH-HH
Q 029613           72 -GLNKNLGFSAED--------RTENIRRV--------------GEVAKLFADAGLI--------CIASLISPYRKDR-DA  119 (190)
Q Consensus        72 -~~~~~i~~~~~~--------~~~~~~~~--------------~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~i  119 (190)
                       ..+..++|.+++        ..+++...              ..+..++...++.        ..+..+|+||+|| .+
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l  160 (253)
T PRK14267         81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVI  160 (253)
T ss_pred             HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHH
Confidence             112233443332        12222110              1122334444431        2367799999999 69


Q ss_pred             HHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          120 CRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       120 arall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ||+++.+|+++  +|||||++||+..++.+++.+++.
T Consensus       161 aral~~~p~ll--llDEP~~~LD~~~~~~l~~~l~~~  195 (253)
T PRK14267        161 ARALAMKPKIL--LMDEPTANIDPVGTAKIEELLFEL  195 (253)
T ss_pred             HHHHhcCCCEE--EEcCCCccCCHHHHHHHHHHHHHH
Confidence            99999999999  999999999999999999999874

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.96  E-value=3.9e-30  Score=206.48  Aligned_cols=150  Identities=24%  Similarity=0.248  Sum_probs=116.7

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc------cccccc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------GLNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------~~~~~i   77 (190)
                      |++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++..      ..+..+
T Consensus         1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i   79 (240)
T PRK09493          1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE-EITSGDLIVDGLKVNDPKVDERLIRQEA   79 (240)
T ss_pred             CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCChhHHHHhhce
Confidence            478999999998888999999999999999999999999999999999977 7889999999977542      112223


Q ss_pred             CCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEE
Q 029613           78 GFSAED--------RTENIRR-------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIE  131 (190)
Q Consensus        78 ~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~  131 (190)
                      +|.+++        ..+++..             ...+..++...++..    .+..+|+||+|| .+||+++.+|+++ 
T Consensus        80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll-  158 (240)
T PRK09493         80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLM-  158 (240)
T ss_pred             EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEE-
Confidence            333322        1122211             012233445555532    367799999999 6999999999999 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHcC
Q 029613          132 VFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                       +|||||++||...++.+++.+++.
T Consensus       159 -llDEP~~~LD~~~~~~l~~~l~~~  182 (240)
T PRK09493        159 -LFDEPTSALDPELRHEVLKVMQDL  182 (240)
T ss_pred             -EEcCCcccCCHHHHHHHHHHHHHH
Confidence             999999999999999999988764

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=3.1e-30  Score=203.38  Aligned_cols=152  Identities=16%  Similarity=0.162  Sum_probs=118.5

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccc-----cccc
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGL-----NKNL   77 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~-----~~~i   77 (190)
                      +++++++++++||+..+++++||++++|++++|+|||||||||++++|+|.+ +|++|.|.++|+++....     +..+
T Consensus         3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~-~P~~G~v~~~G~~it~l~p~~iar~Gi   81 (250)
T COG0411           3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-KPSSGTVIFRGRDITGLPPHRIARLGI   81 (250)
T ss_pred             ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc-cCCCceEEECCcccCCCCHHHHHhccc
Confidence            5789999999999999999999999999999999999999999999999988 899999999999875310     1111


Q ss_pred             CCChhh--------HHHH------------------------HHHHHHHHHHHHHcCccee----ecccCccHHHH-HHH
Q 029613           78 GFSAED--------RTEN------------------------IRRVGEVAKLFADAGLICI----ASLISPYRKDR-DAC  120 (190)
Q Consensus        78 ~~~~~~--------~~~~------------------------~~~~~~~~~~~~~~~~~~~----~~~lS~g~kqr-~ia  120 (190)
                      ..+.|.        ..++                        .....+...+++..++...    ...||.|++++ +||
T Consensus        82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA  161 (250)
T COG0411          82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA  161 (250)
T ss_pred             eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence            111110        0011                        1111233445566666543    56699999888 799


Q ss_pred             HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      ||++.+|+++  +||||.+++.++....+.+.+++-.
T Consensus       162 rALa~~P~lL--LLDEPaAGln~~e~~~l~~~i~~i~  196 (250)
T COG0411         162 RALATQPKLL--LLDEPAAGLNPEETEELAELIRELR  196 (250)
T ss_pred             HHHhcCCCEE--EecCccCCCCHHHHHHHHHHHHHHH
Confidence            9999999999  9999999999999999998888744

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=5.4e-30  Score=210.60  Aligned_cols=153  Identities=19%  Similarity=0.210  Sum_probs=119.2

Q ss_pred             CC-cccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc------c
Q 029613            1 MA-TVGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------G   72 (190)
Q Consensus         1 m~-~~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------~   72 (190)
                      |. +|++++|++++|+ ++.+++++||++++||+++|+|+||||||||+++|+|++ ++.+|+|.++|.++..      .
T Consensus         1 ~~~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~-~p~~G~i~i~g~~~~~~~~~~~~   79 (283)
T PRK13636          1 MEDYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL-KPSSGRILFDGKPIDYSRKGLMK   79 (283)
T ss_pred             CCCceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCccEEEECCEECCCCcchHHH
Confidence            54 4899999999996 578999999999999999999999999999999999987 7889999999987631      1


Q ss_pred             cccccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCC
Q 029613           73 LNKNLGFSAED---------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        73 ~~~~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~  126 (190)
                      .+..++|.+++         ..+++..            ...+...+...++..    .+..+|+||+|| .+||+++.+
T Consensus        80 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~  159 (283)
T PRK13636         80 LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVME  159 (283)
T ss_pred             HHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            22334444432         1122211            012233445555533    377899999999 699999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+++  +|||||++||+..+..+++.+++-
T Consensus       160 p~lL--ilDEPt~gLD~~~~~~l~~~l~~l  187 (283)
T PRK13636        160 PKVL--VLDEPTAGLDPMGVSEIMKLLVEM  187 (283)
T ss_pred             CCEE--EEeCCccCCCHHHHHHHHHHHHHH
Confidence            9999  999999999999999998888754

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.96  E-value=1.7e-30  Score=197.44  Aligned_cols=128  Identities=19%  Similarity=0.223  Sum_probs=106.2

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhH
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDR   84 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~   84 (190)
                      ++++|++++|++.++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..       ....+.
T Consensus         1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~-------~~~~~~   72 (163)
T cd03216           1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY-KPDSGEILVDGKEVSF-------ASPRDA   72 (163)
T ss_pred             CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCc-------CCHHHH
Confidence            46889999998888999999999999999999999999999999999977 7889999999976642       111100


Q ss_pred             HHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613           85 TENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                         .           . ....++..+|+||+|| .+||+++.+|+++  +|||||++||...++.+++.+++..
T Consensus        73 ---~-----------~-~~i~~~~qLS~G~~qrl~laral~~~p~il--llDEP~~~LD~~~~~~l~~~l~~~~  129 (163)
T cd03216          73 ---R-----------R-AGIAMVYQLSVGERQMVEIARALARNARLL--ILDEPTAALTPAEVERLFKVIRRLR  129 (163)
T ss_pred             ---H-----------h-cCeEEEEecCHHHHHHHHHHHHHhcCCCEE--EEECCCcCCCHHHHHHHHHHHHHHH
Confidence               0           0 0111223399999999 6999999999999  9999999999999999999998653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.96  E-value=5.3e-30  Score=200.80  Aligned_cols=149  Identities=17%  Similarity=0.173  Sum_probs=115.3

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCCh
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFSA   81 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~~   81 (190)
                      ++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..   ..+..++|.+
T Consensus         1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (201)
T cd03231           1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS-PPLAGRVLLNGGPLDFQRDSIARGLLYLG   79 (201)
T ss_pred             CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccccHHhhhheEEec
Confidence            46899999999888999999999999999999999999999999999977 7889999999877532   1122233322


Q ss_pred             hh--------HHHHHHHH------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhh
Q 029613           82 ED--------RTENIRRV------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCE  142 (190)
Q Consensus        82 ~~--------~~~~~~~~------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld  142 (190)
                      ++        ..+++...      ..+..++...++..    .+..+|+||+|| .+||+++.+|+++  +|||||++||
T Consensus        80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll--llDEPt~~LD  157 (201)
T cd03231          80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLW--ILDEPTTALD  157 (201)
T ss_pred             cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCCCCCC
Confidence            21        12222111      12333444445432    367799999999 6999999999999  9999999999


Q ss_pred             hcChHHHHHHHHcC
Q 029613          143 ARDPKGLYKLARAG  156 (190)
Q Consensus       143 ~~~~~~~~~~~~~~  156 (190)
                      +..++.+++.+++-
T Consensus       158 ~~~~~~l~~~l~~~  171 (201)
T cd03231         158 KAGVARFAEAMAGH  171 (201)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998753

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.96  E-value=8.7e-30  Score=204.59  Aligned_cols=150  Identities=16%  Similarity=0.206  Sum_probs=117.0

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~   78 (190)
                      |++++|++++|++.++++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++...     .+..++
T Consensus         2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (242)
T TIGR03411         2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT-RPDEGSVLFGGTDLTGLPEHQIARAGIG   80 (242)
T ss_pred             eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCeecCCCCHHHHHhcCee
Confidence            688999999998888999999999999999999999999999999999987 78899999999765320     111233


Q ss_pred             CChhh--------HHHHHHH--------------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCC
Q 029613           79 FSAED--------RTENIRR--------------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLP  125 (190)
Q Consensus        79 ~~~~~--------~~~~~~~--------------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~  125 (190)
                      |.+++        ..+++..                    -..+..++...++..    .+..+|+||+|| .+||+++.
T Consensus        81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~  160 (242)
T TIGR03411        81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ  160 (242)
T ss_pred             EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence            33322        1222211                    012233444445532    367799999999 69999999


Q ss_pred             CCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          126 DSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +|+++  +|||||++||+..++.+++.+++.
T Consensus       161 ~p~~l--llDEPt~~LD~~~~~~l~~~l~~~  189 (242)
T TIGR03411       161 DPKLL--LLDEPVAGMTDEETEKTAELLKSL  189 (242)
T ss_pred             CCCEE--EecCCccCCCHHHHHHHHHHHHHH
Confidence            99999  999999999999999999999864

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.2e-29  Score=205.12  Aligned_cols=152  Identities=20%  Similarity=0.211  Sum_probs=116.6

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--h--CCCcEEEEcCccccc------c
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--S--RGKLSYILDGDNLRH------G   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~--~~~g~i~~~g~~~~~------~   72 (190)
                      |+++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++.  +  +.+|.|.++|.++..      .
T Consensus         5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   84 (253)
T PRK14242          5 PKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE   84 (253)
T ss_pred             cEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence            58999999999988889999999999999999999999999999999999763  2  478999999976632      1


Q ss_pred             cccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHh
Q 029613           73 LNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGLI--------CIASLISPYRKDR-DACRAM  123 (190)
Q Consensus        73 ~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iaral  123 (190)
                      .+..++|.+++       ..+++...             ..+...+...++.        ..+..+|+||+|| .+||++
T Consensus        85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral  164 (253)
T PRK14242         85 LRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL  164 (253)
T ss_pred             HhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence            12233443332       22222110             1122233444441        2367799999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||...++.+.+.+++.
T Consensus       165 ~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~  195 (253)
T PRK14242        165 AVEPEVL--LMDEPASALDPIATQKIEELIHEL  195 (253)
T ss_pred             hcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999  999999999999999999999875

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=6.1e-30  Score=209.91  Aligned_cols=152  Identities=19%  Similarity=0.216  Sum_probs=118.8

Q ss_pred             cccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613            3 TVGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN   76 (190)
Q Consensus         3 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~   76 (190)
                      +|++++|++++|+.  +.+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..    .....
T Consensus         4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~-~p~~G~i~~~g~~i~~~~~~~~~~~   82 (279)
T PRK13635          4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL-LPEAGTITVGGMVLSEETVWDVRRQ   82 (279)
T ss_pred             ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECCcCcHHHHhhh
Confidence            57999999999974  56999999999999999999999999999999999987 7889999999987642    11223


Q ss_pred             cCCChhh---------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613           77 LGFSAED---------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        77 i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      ++|.+++         ..+++..            ...+..++...++..    .+..+|+||+|| .+||+++.+|+++
T Consensus        83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  162 (279)
T PRK13635         83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII  162 (279)
T ss_pred             eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            3443332         1222211            012333444445533    367899999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                        +|||||++||+..+..+++.+++..
T Consensus       163 --lLDEPt~gLD~~~~~~l~~~l~~l~  187 (279)
T PRK13635        163 --ILDEATSMLDPRGRREVLETVRQLK  187 (279)
T ss_pred             --EEeCCcccCCHHHHHHHHHHHHHHH
Confidence              9999999999999999999998643

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.96  E-value=8e-30  Score=207.27  Aligned_cols=153  Identities=20%  Similarity=0.213  Sum_probs=117.9

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC---CcEEEEcCccccc------
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG---KLSYILDGDNLRH------   71 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~---~g~i~~~g~~~~~------   71 (190)
                      |.+|++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++ ++.   +|+|.++|.++..      
T Consensus         1 ~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~p~~~~~G~i~~~g~~~~~~~~~~~   79 (262)
T PRK09984          1 MQTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI-TGDKSAGSHIELLGRTVQREGRLAR   79 (262)
T ss_pred             CCcEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC-CCCCCCceEEEECCEecccccccch
Confidence            778999999999999889999999999999999999999999999999999987 443   5899999976531      


Q ss_pred             ---ccccccCCChhh--------HHHHHHH--------------------HHHHHHHHHHcCcc----eeecccCccHHH
Q 029613           72 ---GLNKNLGFSAED--------RTENIRR--------------------VGEVAKLFADAGLI----CIASLISPYRKD  116 (190)
Q Consensus        72 ---~~~~~i~~~~~~--------~~~~~~~--------------------~~~~~~~~~~~~~~----~~~~~lS~g~kq  116 (190)
                         .....++|.+++        ..+++..                    -..+..++...++.    ..+..||+||+|
T Consensus        80 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  159 (262)
T PRK09984         80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQ  159 (262)
T ss_pred             hHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHH
Confidence               011123333322        1122210                    01233344445553    236779999999


Q ss_pred             H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      | .+||+++.+|+++  +|||||++||....+.+.+.+++-
T Consensus       160 rv~laral~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~  198 (262)
T PRK09984        160 RVAIARALMQQAKVI--LADEPIASLDPESARIVMDTLRDI  198 (262)
T ss_pred             HHHHHHHHhcCCCEE--EecCccccCCHHHHHHHHHHHHHH
Confidence            9 6999999999999  999999999999999999998864

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=7.4e-30  Score=218.24  Aligned_cols=153  Identities=18%  Similarity=0.193  Sum_probs=119.6

Q ss_pred             CCcccccCcceeccCccc------------------------cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh
Q 029613            1 MATVGNSTNIFWQESPIG------------------------RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS   56 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~------------------------~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~   56 (190)
                      |+.+|+++|++|.|+..+                        +++++||++++|++++|+||||||||||+|+|+|++ +
T Consensus         1 ~~~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~-~   79 (400)
T PRK10070          1 MAIKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI-E   79 (400)
T ss_pred             CCcEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC-C
Confidence            677889999999887754                        799999999999999999999999999999999987 7


Q ss_pred             CCCcEEEEcCcccccc----c----ccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce---
Q 029613           57 RGKLSYILDGDNLRHG----L----NKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC---  105 (190)
Q Consensus        57 ~~~g~i~~~g~~~~~~----~----~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~---  105 (190)
                      +.+|+|.++|.++...    .    +..++|.+++        ..+++..            ...+..++...++..   
T Consensus        80 p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~  159 (400)
T PRK10070         80 PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH  159 (400)
T ss_pred             CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh
Confidence            8899999999876421    0    1234443332        2222221            112334455555533   


Q ss_pred             -eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          106 -IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       106 -~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                       .+..||+||+|| .+||+++.+|+++  +|||||++||+..++.+++.+++.
T Consensus       160 ~~~~~LSgGq~QRv~LArAL~~~P~iL--LLDEPts~LD~~~r~~l~~~L~~l  210 (400)
T PRK10070        160 SYPDELSGGMRQRVGLARALAINPDIL--LMDEAFSALDPLIRTEMQDELVKL  210 (400)
T ss_pred             cCcccCCHHHHHHHHHHHHHhcCCCEE--EEECCCccCCHHHHHHHHHHHHHH
Confidence             377899999999 6999999999999  999999999999999999888764

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.96  E-value=5.3e-30  Score=204.52  Aligned_cols=149  Identities=18%  Similarity=0.271  Sum_probs=115.0

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCC
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~   79 (190)
                      ++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++...     .+..++|
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (232)
T cd03218           1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV-KPDSGKILLDGQDITKLPMHKRARLGIGY   79 (232)
T ss_pred             CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccCCHhHHHhccEEE
Confidence            46889999999888999999999999999999999999999999999987 78899999999765321     1122333


Q ss_pred             Chhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613           80 SAED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFM  134 (190)
Q Consensus        80 ~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vll  134 (190)
                      .+++        ..+++...            ..+..++...++..    .+..+|+||+|| .+||+++.+|+++  +|
T Consensus        80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll--ll  157 (232)
T cd03218          80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFL--LL  157 (232)
T ss_pred             ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE--Ee
Confidence            3322        12222110            11223444445532    367799999999 6999999999999  99


Q ss_pred             eCCchhhhhcChHHHHHHHHcC
Q 029613          135 NMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       135 DEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ||||++||...++.+++.+++-
T Consensus       158 DEPt~~LD~~~~~~~~~~l~~~  179 (232)
T cd03218         158 DEPFAGVDPIAVQDIQKIIKIL  179 (232)
T ss_pred             cCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999988764

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.96  E-value=7.5e-30  Score=201.06  Aligned_cols=149  Identities=15%  Similarity=0.166  Sum_probs=114.8

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccCCCh
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLGFSA   81 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~~~~   81 (190)
                      ++++|++++|++..+++++||++++| +++|+||||||||||+++|+|++ ++.+|+|.++|.++...   ....++|.+
T Consensus         1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   78 (211)
T cd03264           1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT-PPSSGTIRIDGQDVLKQPQKLRRRIGYLP   78 (211)
T ss_pred             CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCCccccchHHHHhheEEec
Confidence            46889999998888999999999999 99999999999999999999977 78899999999765321   112233333


Q ss_pred             hh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613           82 ED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNM  136 (190)
Q Consensus        82 ~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDE  136 (190)
                      ++        ..+++..            ...+..++...++..    .+..+|+||+|| .+||+++.+|+++  +|||
T Consensus        79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll--llDE  156 (211)
T cd03264          79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSIL--IVDE  156 (211)
T ss_pred             CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEE--EEcC
Confidence            22        1222211            012233444455432    367799999999 6999999999999  9999


Q ss_pred             CchhhhhcChHHHHHHHHcCC
Q 029613          137 PLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       137 P~~~ld~~~~~~~~~~~~~~~  157 (190)
                      ||++||+..++.+++.+++-.
T Consensus       157 Pt~~LD~~~~~~l~~~l~~~~  177 (211)
T cd03264         157 PTAGLDPEERIRFRNLLSELG  177 (211)
T ss_pred             CcccCCHHHHHHHHHHHHHHh
Confidence            999999999999999998643

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.96  E-value=7.1e-30  Score=208.44  Aligned_cols=151  Identities=19%  Similarity=0.218  Sum_probs=117.1

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------cccc
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------GLNK   75 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~~~~   75 (190)
                      +||+++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..       ....
T Consensus         6 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~   84 (269)
T PRK11831          6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI-APDHGEILFDGENIPAMSRSRLYTVRK   84 (269)
T ss_pred             ceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEccccChhhHHHHhh
Confidence            4789999999999888999999999999999999999999999999999987 7889999999976531       0112


Q ss_pred             ccCCChhh--------HHHHHHHH-------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCe
Q 029613           76 NLGFSAED--------RTENIRRV-------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        76 ~i~~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      .++|.+++        ..+++...             ..+..++...++..    .+..||+||+|| .+||+++.+|++
T Consensus        85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l  164 (269)
T PRK11831         85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL  164 (269)
T ss_pred             cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            23333222        12222110             11223344455532    367899999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +  +|||||++||+..++.+++.+++.
T Consensus       165 l--lLDEPt~~LD~~~~~~l~~~l~~~  189 (269)
T PRK11831        165 I--MFDEPFVGQDPITMGVLVKLISEL  189 (269)
T ss_pred             E--EEcCCCccCCHHHHHHHHHHHHHH
Confidence            9  999999999999999999888864

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.96  E-value=8e-30  Score=202.17  Aligned_cols=149  Identities=18%  Similarity=0.193  Sum_probs=113.6

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCC
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~   79 (190)
                      |+++|++++|++.++++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++...     .+..++|
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (222)
T cd03224           1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL-PPRSGSIRFDGRDITGLPPHERARAGIGY   79 (222)
T ss_pred             CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence            46889999998888999999999999999999999999999999999987 78899999999765321     1223444


Q ss_pred             Chhh--------HHHHHHHH----------HHHHHHHHHc-Cc----ceeecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613           80 SAED--------RTENIRRV----------GEVAKLFADA-GL----ICIASLISPYRKDR-DACRAMLPDSNFIEVFMN  135 (190)
Q Consensus        80 ~~~~--------~~~~~~~~----------~~~~~~~~~~-~~----~~~~~~lS~g~kqr-~iarall~~~~il~vllD  135 (190)
                      .+++        ..+++...          ..+..++... ++    ...+..+|+||+|| .+||+++.+|+++  +||
T Consensus        80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll--llD  157 (222)
T cd03224          80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLL--LLD  157 (222)
T ss_pred             eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEE--EEC
Confidence            4332        11222110          0111222222 11    23367799999999 6999999999999  999


Q ss_pred             CCchhhhhcChHHHHHHHHcC
Q 029613          136 MPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       136 EP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |||++||+..++.+++.+++.
T Consensus       158 EPt~~LD~~~~~~l~~~l~~~  178 (222)
T cd03224         158 EPSEGLAPKIVEEIFEAIREL  178 (222)
T ss_pred             CCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999864

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.96  E-value=1.3e-29  Score=201.91  Aligned_cols=151  Identities=15%  Similarity=0.133  Sum_probs=117.2

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      +|++++|+++.|++.++++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..    .....++
T Consensus         6 ~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~   84 (225)
T PRK10247          6 PLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDISTLKPEIYRQQVS   84 (225)
T ss_pred             ceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCeEEECCEEcCcCCHHHHHhccE
Confidence            4799999999999888999999999999999999999999999999999977 7889999999976531    1112233


Q ss_pred             CChhh-------HHHHHHH----------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613           79 FSAED-------RTENIRR----------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMN  135 (190)
Q Consensus        79 ~~~~~-------~~~~~~~----------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllD  135 (190)
                      |.+++       ..+++..          ...+..++...++.     ..+..+|+|++|| .+||+++.+|+++  +||
T Consensus        85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll--llD  162 (225)
T PRK10247         85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVL--LLD  162 (225)
T ss_pred             EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE--EEe
Confidence            32222       2222211          01223445555552     2367799999999 6999999999999  999


Q ss_pred             CCchhhhhcChHHHHHHHHcC
Q 029613          136 MPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       136 EP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |||++||+..++.+.+.+++-
T Consensus       163 EPt~~LD~~~~~~l~~~l~~~  183 (225)
T PRK10247        163 EITSALDESNKHNVNEIIHRY  183 (225)
T ss_pred             CCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999888763

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.2e-29  Score=204.67  Aligned_cols=151  Identities=19%  Similarity=0.141  Sum_probs=116.5

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc----cccc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH----GLNK   75 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~----~~~~   75 (190)
                      +++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++.+    +.+|.|.++|.++..    ..+.
T Consensus         3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   82 (250)
T PRK14247          3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR   82 (250)
T ss_pred             eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence            68999999999888899999999999999999999999999999999998732    368999999976532    1122


Q ss_pred             ccCCChhh--------HHHHHHH--------------HHHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHhC
Q 029613           76 NLGFSAED--------RTENIRR--------------VGEVAKLFADAGLI--------CIASLISPYRKDR-DACRAML  124 (190)
Q Consensus        76 ~i~~~~~~--------~~~~~~~--------------~~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iarall  124 (190)
                      .++|.+++        ..+++..              ...+...+...++.        ..+..+|+||+|| .+||+++
T Consensus        83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~  162 (250)
T PRK14247         83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA  162 (250)
T ss_pred             cEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence            23333322        1222211              01223344444442        2367899999999 6999999


Q ss_pred             CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+|+++  +|||||++||+..++.+++.+++-
T Consensus       163 ~~p~ll--lLDEP~~~LD~~~~~~l~~~l~~~  192 (250)
T PRK14247        163 FQPEVL--LADEPTANLDPENTAKIESLFLEL  192 (250)
T ss_pred             cCCCEE--EEcCCCccCCHHHHHHHHHHHHHH
Confidence            999999  999999999999999999999874

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=6.6e-30  Score=207.00  Aligned_cols=150  Identities=16%  Similarity=0.155  Sum_probs=115.8

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      |++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..    .....++|
T Consensus         2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (255)
T PRK11231          2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL-TPQSGTVFLGDKPISMLSSRQLARRLAL   80 (255)
T ss_pred             EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence            689999999999888999999999999999999999999999999999977 7889999999976532    11112333


Q ss_pred             Chhh--------HHHHHHH----------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeE
Q 029613           80 SAED--------RTENIRR----------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        80 ~~~~--------~~~~~~~----------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      .+++        ..+++..                -..+..++...++.    ..+..+|+||+|| .+||+++.+|+++
T Consensus        81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  160 (255)
T PRK11231         81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVV  160 (255)
T ss_pred             ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            3222        1122110                01122334444443    2367899999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +|||||++||+..++.+.+.+++.
T Consensus       161 --llDEP~~~LD~~~~~~l~~~l~~l  184 (255)
T PRK11231        161 --LLDEPTTYLDINHQVELMRLMREL  184 (255)
T ss_pred             --EEcCCcccCCHHHHHHHHHHHHHH
Confidence              999999999999999999988764

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=6.1e-30  Score=210.69  Aligned_cols=150  Identities=18%  Similarity=0.179  Sum_probs=117.7

Q ss_pred             ccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc------c
Q 029613            4 VGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------G   72 (190)
Q Consensus         4 ~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------~   72 (190)
                      +++++|++++|+.     +.+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++..      .
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~   80 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL-KPTSGKIIIDGVDITDKKVKLSD   80 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCccEEEECCEECCCcCccHHH
Confidence            4889999999974     46999999999999999999999999999999999987 7889999999987642      1


Q ss_pred             cccccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcc------eeecccCccHHHH-HHHHHhC
Q 029613           73 LNKNLGFSAED---------RTENIRR------------VGEVAKLFADAGLI------CIASLISPYRKDR-DACRAML  124 (190)
Q Consensus        73 ~~~~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~------~~~~~lS~g~kqr-~iarall  124 (190)
                      .+..++|.+++         ..+++..            ...+..++...++.      ..+..||+||+|| .+||+++
T Consensus        81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~  160 (287)
T PRK13637         81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA  160 (287)
T ss_pred             HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence            22334544443         1122211            01233445555553      2367899999999 6999999


Q ss_pred             CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+|+++  +|||||++||+..+..+++.+++.
T Consensus       161 ~~P~ll--llDEPt~gLD~~~~~~l~~~l~~l  190 (287)
T PRK13637        161 MEPKIL--ILDEPTAGLDPKGRDEILNKIKEL  190 (287)
T ss_pred             cCCCEE--EEECCccCCCHHHHHHHHHHHHHH
Confidence            999999  999999999999999999998764

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=5.1e-30  Score=205.43  Aligned_cols=155  Identities=15%  Similarity=0.182  Sum_probs=115.6

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----cccccc
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKNL   77 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~i   77 (190)
                      +|++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..     ..+..+
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i   82 (237)
T PRK11614          4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP-RATSGRIVFDGKDITDWQTAKIMREAV   82 (237)
T ss_pred             cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCceEEECCEecCCCCHHHHHHhCE
Confidence            3789999999998888999999999999999999999999999999999977 7889999999976532     011223


Q ss_pred             CCChhh--------HHHHHHH---------H-HHHHHHHHHc-Cc----ceeecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613           78 GFSAED--------RTENIRR---------V-GEVAKLFADA-GL----ICIASLISPYRKDR-DACRAMLPDSNFIEVF  133 (190)
Q Consensus        78 ~~~~~~--------~~~~~~~---------~-~~~~~~~~~~-~~----~~~~~~lS~g~kqr-~iarall~~~~il~vl  133 (190)
                      +|.+++        ..+++..         . ..+..++... ++    ...+..+|+||+|| .+||+++.+|+++  +
T Consensus        83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~il--l  160 (237)
T PRK11614         83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLL--L  160 (237)
T ss_pred             EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEE--E
Confidence            333322        1111110         0 0111112211 11    22467799999999 6999999999999  9


Q ss_pred             eeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          134 MNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       134 lDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      |||||++||+..++.+++.+++...+|
T Consensus       161 lDEPt~~LD~~~~~~l~~~l~~~~~~~  187 (237)
T PRK11614        161 LDEPSLGLAPIIIQQIFDTIEQLREQG  187 (237)
T ss_pred             EcCccccCCHHHHHHHHHHHHHHHHCC
Confidence            999999999999999999988643334

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=9.5e-30  Score=204.53  Aligned_cols=150  Identities=18%  Similarity=0.221  Sum_probs=117.0

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      +++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..    ..+..++|
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~i~~   81 (241)
T PRK14250          3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI-DPTEGSILIDGVDIKTIDVIDLRRKIGM   81 (241)
T ss_pred             eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence            689999999998888999999999999999999999999999999999977 7889999999976532    11222333


Q ss_pred             Chhh-------HHHHHHH--------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613           80 SAED-------RTENIRR--------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL  138 (190)
Q Consensus        80 ~~~~-------~~~~~~~--------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~  138 (190)
                      .+++       ..+++..        ..++..++...++.     ..+..+|+||+|| .+||+++.+|+++  +|||||
T Consensus        82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll--llDEPt  159 (241)
T PRK14250         82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVL--LLDEPT  159 (241)
T ss_pred             EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE--EEeCCc
Confidence            3332       1222210        01223344455552     2367799999999 6999999999999  999999


Q ss_pred             hhhhhcChHHHHHHHHcC
Q 029613          139 ELCEARDPKGLYKLARAG  156 (190)
Q Consensus       139 ~~ld~~~~~~~~~~~~~~  156 (190)
                      ++||...++.+++.+++.
T Consensus       160 ~~LD~~~~~~l~~~l~~~  177 (241)
T PRK14250        160 SALDPTSTEIIEELIVKL  177 (241)
T ss_pred             ccCCHHHHHHHHHHHHHH
Confidence            999999999999888764

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=7.9e-30  Score=204.78  Aligned_cols=152  Identities=17%  Similarity=0.263  Sum_probs=116.3

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----cccc
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNK   75 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~   75 (190)
                      |. |++++|++++|+++.+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..     ..+.
T Consensus         1 ~~-~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~   78 (241)
T PRK10895          1 MA-TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV-PRDAGNIIIDDEDISLLPLHARARR   78 (241)
T ss_pred             Cc-eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHHh
Confidence            53 789999999998888999999999999999999999999999999999977 7889999999976532     0112


Q ss_pred             ccCCChhh--------HHHHHHH-------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613           76 NLGFSAED--------RTENIRR-------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        76 ~i~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      .++|.+++        ..+++..             ...+..++...++.    ..+..+|+||+|| .+||+++.+|++
T Consensus        79 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l  158 (241)
T PRK10895         79 GIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKF  158 (241)
T ss_pred             CeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            23333322        1122111             01122334444443    2367799999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +  +|||||++||+..++.+++.+++.
T Consensus       159 l--llDEPt~~LD~~~~~~l~~~l~~~  183 (241)
T PRK10895        159 I--LLDEPFAGVDPISVIDIKRIIEHL  183 (241)
T ss_pred             E--EEcCCcccCCHHHHHHHHHHHHHH
Confidence            9  999999999999999888888754

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.3e-29  Score=205.13  Aligned_cols=151  Identities=15%  Similarity=0.179  Sum_probs=116.4

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccccc
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNL   77 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i   77 (190)
                      +|++++|+++.|++.++++++||++.+|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++...     .+..+
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~i   82 (255)
T PRK11300          4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY-KPTGGTILLRGQHIEGLPGHQIARMGV   82 (255)
T ss_pred             ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc-CCCcceEEECCEECCCCCHHHHHhcCe
Confidence            3789999999998889999999999999999999999999999999999977 78899999999765321     11112


Q ss_pred             CCChhh--------HHHHHHH---------------------------HHHHHHHHHHcCcce----eecccCccHHHH-
Q 029613           78 GFSAED--------RTENIRR---------------------------VGEVAKLFADAGLIC----IASLISPYRKDR-  117 (190)
Q Consensus        78 ~~~~~~--------~~~~~~~---------------------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-  117 (190)
                      +|.+++        ..+++..                           ...+..++...++..    .+..+|+||+|| 
T Consensus        83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv  162 (255)
T PRK11300         83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL  162 (255)
T ss_pred             EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH
Confidence            222221        1222111                           011223344445432    367799999999 


Q ss_pred             HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          118 DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       118 ~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+||+++.+|+++  +|||||++||+..++.+.+.+.+.
T Consensus       163 ~la~al~~~p~ll--llDEPt~~LD~~~~~~l~~~L~~~  199 (255)
T PRK11300        163 EIARCMVTQPEIL--MLDEPAAGLNPKETKELDELIAEL  199 (255)
T ss_pred             HHHHHHhcCCCEE--EEcCCccCCCHHHHHHHHHHHHHH
Confidence            6999999999999  999999999999999999988764

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.96  E-value=1.3e-29  Score=204.31  Aligned_cols=150  Identities=21%  Similarity=0.174  Sum_probs=115.9

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC-----CcEEEEcCccccc------c
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG-----KLSYILDGDNLRH------G   72 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~-----~g~i~~~g~~~~~------~   72 (190)
                      |++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.     +|.|.++|.++..      .
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~~~~~~G~i~~~g~~~~~~~~~~~~   79 (247)
T TIGR00972         1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN-DLVPGVRIEGKVLFDGQDIYDKKIDVVE   79 (247)
T ss_pred             CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-CCCcCCCCceEEEECCEEccccccchHH
Confidence            478999999999888999999999999999999999999999999999987 555     8999999987632      1


Q ss_pred             cccccCCChhh-------HHHHHHH-------------HHHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHh
Q 029613           73 LNKNLGFSAED-------RTENIRR-------------VGEVAKLFADAGLI--------CIASLISPYRKDR-DACRAM  123 (190)
Q Consensus        73 ~~~~i~~~~~~-------~~~~~~~-------------~~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iaral  123 (190)
                      .+..++|.+++       ..+++..             ...+..++...++.        ..+..+|+||+|| .+||++
T Consensus        80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral  159 (247)
T TIGR00972        80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL  159 (247)
T ss_pred             HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            12233433332       1222211             01122344444543        2367799999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||+..+..+++.+++-
T Consensus       160 ~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~  190 (247)
T TIGR00972       160 AVEPEVL--LLDEPTSALDPIATGKIEELIQEL  190 (247)
T ss_pred             hcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999  999999999999999999988864

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.96  E-value=1.7e-29  Score=204.44  Aligned_cols=153  Identities=16%  Similarity=0.109  Sum_probs=114.3

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCC
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFS   80 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~   80 (190)
                      |.+|++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.+++.....-+.+...+.
T Consensus         1 ~~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~~~~~i~~v~q~~~~~   79 (251)
T PRK09544          1 MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV-APDEGVIKRNGKLRIGYVPQKLYLD   79 (251)
T ss_pred             CCcEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCccCEEEeccccccc
Confidence            667899999999999888999999999999999999999999999999999987 7889999988742110000110000


Q ss_pred             h---hhHHHHHHH-----HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChH
Q 029613           81 A---EDRTENIRR-----VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPK  147 (190)
Q Consensus        81 ~---~~~~~~~~~-----~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~  147 (190)
                      .   ....+++..     ...+...+...++..    .+..+|+||+|| .+||+++.+|+++  +|||||++||+..++
T Consensus        80 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ll--lLDEPt~~LD~~~~~  157 (251)
T PRK09544         80 TTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLL--VLDEPTQGVDVNGQV  157 (251)
T ss_pred             cccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCCcCCCHHHHH
Confidence            0   011111100     012333444445432    367799999999 6999999999999  999999999999999


Q ss_pred             HHHHHHHcC
Q 029613          148 GLYKLARAG  156 (190)
Q Consensus       148 ~~~~~~~~~  156 (190)
                      .+++.+++-
T Consensus       158 ~l~~~L~~~  166 (251)
T PRK09544        158 ALYDLIDQL  166 (251)
T ss_pred             HHHHHHHHH
Confidence            999888753

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.96  E-value=1.6e-29  Score=203.25  Aligned_cols=149  Identities=21%  Similarity=0.264  Sum_probs=115.5

Q ss_pred             cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      ++++|++++|++ ..+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++..    .....++|
T Consensus         1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (242)
T cd03295           1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI-EPTSGEIFIDGEDIREQDPVELRRKIGY   79 (242)
T ss_pred             CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCeEcCcCChHHhhcceEE
Confidence            467899999987 78999999999999999999999999999999999977 7889999999976532    11222333


Q ss_pred             Chhh--------HHHHHHH------------HHHHHHHHHHcCcce------eecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613           80 SAED--------RTENIRR------------VGEVAKLFADAGLIC------IASLISPYRKDR-DACRAMLPDSNFIEV  132 (190)
Q Consensus        80 ~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~------~~~~lS~g~kqr-~iarall~~~~il~v  132 (190)
                      .+++        ..+++..            ...+..++..+++..      .+..+|+||+|| .+||+++.+|+++  
T Consensus        80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll--  157 (242)
T cd03295          80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLL--  157 (242)
T ss_pred             EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEE--
Confidence            3332        1222211            112334455555542      267799999999 6999999999999  


Q ss_pred             EeeCCchhhhhcChHHHHHHHHcC
Q 029613          133 FMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       133 llDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +|||||++||+..++.+.+.+++.
T Consensus       158 llDEPt~~LD~~~~~~l~~~L~~~  181 (242)
T cd03295         158 LMDEPFGALDPITRDQLQEEFKRL  181 (242)
T ss_pred             EecCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999888864

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.96  E-value=1.1e-29  Score=198.48  Aligned_cols=149  Identities=19%  Similarity=0.165  Sum_probs=114.8

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccCCCh
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLGFSA   81 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~~~~   81 (190)
                      ++++|+++.|++..+++++||++.+|++++|+||||||||||+++|+|.+ ++.+|.|.++|.++...   ....++|.+
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (198)
T TIGR01189         1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL-RPDSGEVRWNGTALAEQRDEPHRNILYLG   79 (198)
T ss_pred             CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEEcccchHHhhhheEEec
Confidence            46789999999889999999999999999999999999999999999977 78899999999765321   111222322


Q ss_pred             hh--------HHHHHHHH--------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchh
Q 029613           82 ED--------RTENIRRV--------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLEL  140 (190)
Q Consensus        82 ~~--------~~~~~~~~--------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~  140 (190)
                      ++        ..+++...        ..+...+...++..    .+..+|+||+|| .+||+++.+|+++  +|||||++
T Consensus        80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll--llDEPt~~  157 (198)
T TIGR01189        80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLW--ILDEPTTA  157 (198)
T ss_pred             cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEE--EEeCCCcC
Confidence            21        22222211        11333444445432    367799999999 6999999999999  99999999


Q ss_pred             hhhcChHHHHHHHHcC
Q 029613          141 CEARDPKGLYKLARAG  156 (190)
Q Consensus       141 ld~~~~~~~~~~~~~~  156 (190)
                      ||...++.+.+.+++-
T Consensus       158 LD~~~~~~l~~~l~~~  173 (198)
T TIGR01189       158 LDKAGVALLAGLLRAH  173 (198)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999998864

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.7e-30  Score=205.65  Aligned_cols=151  Identities=21%  Similarity=0.220  Sum_probs=120.6

Q ss_pred             cccccCcceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----ccccc
Q 029613            3 TVGNSTNIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKN   76 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~   76 (190)
                      +|+++++++++|++. .+++++||++.+|+.++|+|+||||||||+++++|++ .|.+|.|.++|.++..     .++..
T Consensus         2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl-~p~~G~v~~~g~~~~~~~~~~~~~~~   80 (235)
T COG1122           2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL-KPTSGEVLVDGLDTSSEKSLLELRQK   80 (235)
T ss_pred             ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcC-cCCCCEEEECCeeccchhhHHHhhcc
Confidence            478899999999765 8999999999999999999999999999999999988 7888999999976531     22333


Q ss_pred             cCCChhhH------------------------HHHHHHHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCC
Q 029613           77 LGFSAEDR------------------------TENIRRVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        77 i~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~  127 (190)
                      +++..|..                        .+..   ..+...+...++.    ..+..|||||+|| +||.+++.+|
T Consensus        81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~---~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P  157 (235)
T COG1122          81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIE---ERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGP  157 (235)
T ss_pred             eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHH---HHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCC
Confidence            44433321                        1111   2233444555553    3488899999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcCCCC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAGKIK  159 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~  159 (190)
                      +++  +|||||++||++.++.+.+.+++.+..
T Consensus       158 ~il--iLDEPta~LD~~~~~~l~~~l~~L~~~  187 (235)
T COG1122         158 EIL--LLDEPTAGLDPKGRRELLELLKKLKEE  187 (235)
T ss_pred             CEE--EEcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            999  999999999999999999999886555

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.9e-29  Score=204.62  Aligned_cols=154  Identities=20%  Similarity=0.207  Sum_probs=117.1

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc-----
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH-----   71 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~-----   71 (190)
                      |.++++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++.+    +.+|.|.++|.++..     
T Consensus         1 ~~~~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~   80 (258)
T PRK14241          1 MAKRIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP   80 (258)
T ss_pred             CCccEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence            66789999999999888899999999999999999999999999999999998732    268999999976521     


Q ss_pred             -ccccccCCChhh--------HHHHHHH------------H-HHHHHHHHHcCc--------ceeecccCccHHHH-HHH
Q 029613           72 -GLNKNLGFSAED--------RTENIRR------------V-GEVAKLFADAGL--------ICIASLISPYRKDR-DAC  120 (190)
Q Consensus        72 -~~~~~i~~~~~~--------~~~~~~~------------~-~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~ia  120 (190)
                       ..+..++|.+++        ..+++..            . ..+..++...++        ...+..||+||+|| .+|
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  160 (258)
T PRK14241         81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA  160 (258)
T ss_pred             HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence             112223333322        1222211            0 112223334443        12367799999999 699


Q ss_pred             HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+++.+|+++  +|||||++||+..+..+++.+++-
T Consensus       161 ral~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~  194 (258)
T PRK14241        161 RAIAVEPDVL--LMDEPCSALDPISTLAIEDLINEL  194 (258)
T ss_pred             HHHhcCCCEE--EEcCCCccCCHHHHHHHHHHHHHH
Confidence            9999999999  999999999999999999988764

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.96  E-value=7.7e-30  Score=224.45  Aligned_cols=153  Identities=20%  Similarity=0.233  Sum_probs=119.7

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccc
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNK   75 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~   75 (190)
                      |.+|++++|++++|++.++++++||++.+|++++|+||||||||||+|+|+|++ ++.+|+|.++|.++...     .+.
T Consensus         1 ~~~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~   79 (501)
T PRK10762          1 MQALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY-TRDAGSILYLGKEVTFNGPKSSQEA   79 (501)
T ss_pred             CCceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHhC
Confidence            678999999999999888999999999999999999999999999999999987 78899999999765310     112


Q ss_pred             ccCCChhh--------HHHHHHH----------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCC
Q 029613           76 NLGFSAED--------RTENIRR----------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        76 ~i~~~~~~--------~~~~~~~----------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~  126 (190)
                      .++|.+++        ..+++..                -..+..++...++..    .+..||+||+|| .+||+++.+
T Consensus        80 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~  159 (501)
T PRK10762         80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFE  159 (501)
T ss_pred             CEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcC
Confidence            23333332        1111110                012334455555532    367899999999 699999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+++  +|||||++||+..+..+++.+++.
T Consensus       160 p~ll--lLDEPt~~LD~~~~~~l~~~l~~l  187 (501)
T PRK10762        160 SKVI--IMDEPTDALTDTETESLFRVIREL  187 (501)
T ss_pred             CCEE--EEeCCcCCCCHHHHHHHHHHHHHH
Confidence            9999  999999999999999999888764

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.96  E-value=9.4e-30  Score=206.42  Aligned_cols=152  Identities=18%  Similarity=0.163  Sum_probs=116.9

Q ss_pred             CcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-----cccc----
Q 029613            2 ATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-----LRHG----   72 (190)
Q Consensus         2 ~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-----~~~~----   72 (190)
                      .+|++++|++++|+++.+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.+     +...    
T Consensus         4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~i~~~~~~~   82 (258)
T PRK11701          4 QPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL-APDAGEVHYRMRDGQLRDLYALSEAE   82 (258)
T ss_pred             CceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCccccccccccCCHHH
Confidence            45899999999998888999999999999999999999999999999999977 7889999999986     4210    


Q ss_pred             ----cccccCCChhhH----------HHHHH------------H-HHHHHHHHHHcCcc-----eeecccCccHHHH-HH
Q 029613           73 ----LNKNLGFSAEDR----------TENIR------------R-VGEVAKLFADAGLI-----CIASLISPYRKDR-DA  119 (190)
Q Consensus        73 ----~~~~i~~~~~~~----------~~~~~------------~-~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~i  119 (190)
                          .+..++|.+++.          .+++.            . ...+..++...++.     ..+..+|+||+|| .+
T Consensus        83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l  162 (258)
T PRK11701         83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI  162 (258)
T ss_pred             HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence                111233333321          01110            0 01122334444442     2367899999999 69


Q ss_pred             HHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          120 CRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       120 arall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ||+++.+|+++  +|||||++||....+.+++.+++.
T Consensus       163 aral~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~  197 (258)
T PRK11701        163 ARNLVTHPRLV--FMDEPTGGLDVSVQARLLDLLRGL  197 (258)
T ss_pred             HHHHhcCCCEE--EEcCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999  999999999999999999888753

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2e-29  Score=203.55  Aligned_cols=154  Identities=16%  Similarity=0.157  Sum_probs=117.5

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc-----
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH-----   71 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~-----   71 (190)
                      |.++++++|++++|+.+++++++||++++|++++|+|+||||||||+++|+|++.+    +.+|.|.++|.++..     
T Consensus         1 ~~~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~   80 (251)
T PRK14251          1 MENIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL   80 (251)
T ss_pred             CCceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence            66789999999999988999999999999999999999999999999999998731    368999999976531     


Q ss_pred             -ccccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHH
Q 029613           72 -GLNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACR  121 (190)
Q Consensus        72 -~~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iar  121 (190)
                       ..+..++|.+++       ..+++...             ..+...+...++        ...+..+|+||+|| .+||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lar  160 (251)
T PRK14251         81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIAR  160 (251)
T ss_pred             HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHH
Confidence             112223333222       12222110             112233344444        12366799999999 6999


Q ss_pred             HhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          122 AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       122 all~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++.+|+++  +|||||++||+..++.+++.+++.
T Consensus       161 al~~~p~ll--llDEP~~~LD~~~~~~l~~~l~~~  193 (251)
T PRK14251        161 ALAVRPKVV--LLDEPTSALDPISSSEIEETLMEL  193 (251)
T ss_pred             HHhcCCCEE--EecCCCccCCHHHHHHHHHHHHHH
Confidence            999999999  999999999999999999999864

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.96  E-value=9.2e-30  Score=206.37  Aligned_cols=157  Identities=19%  Similarity=0.195  Sum_probs=120.5

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----------
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----------   71 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----------   71 (190)
                      ++++++|+++.|+++.+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..           
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~   82 (257)
T PRK10619          4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE-KPSEGSIVVNGQTINLVRDKDGQLKVA   82 (257)
T ss_pred             ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcccccccccccccc
Confidence            4789999999999888999999999999999999999999999999999977 7789999999976531           


Q ss_pred             ------ccccccCCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce-----eecccCccHHHH-H
Q 029613           72 ------GLNKNLGFSAED--------RTENIRR-------------VGEVAKLFADAGLIC-----IASLISPYRKDR-D  118 (190)
Q Consensus        72 ------~~~~~i~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~-----~~~~lS~g~kqr-~  118 (190)
                            .....++|.+++        ..+++..             -..+..++...++..     .+..+|+||+|| .
T Consensus        83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~  162 (257)
T PRK10619         83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS  162 (257)
T ss_pred             cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence                  112233432222        2222211             012334455555532     356799999999 6


Q ss_pred             HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          119 ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       119 iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                      +||+++.+|+++  +|||||++||...++.+.+.+++....|.+
T Consensus       163 laral~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~l~~~g~t  204 (257)
T PRK10619        163 IARALAMEPEVL--LFDEPTSALDPELVGEVLRIMQQLAEEGKT  204 (257)
T ss_pred             HHHHHhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence            999999999999  999999999999999999988865433433

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1e-29  Score=208.07  Aligned_cols=155  Identities=20%  Similarity=0.222  Sum_probs=117.7

Q ss_pred             ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----cccccc
Q 029613            4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~i   77 (190)
                      |++++|++++|+ ...+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..     .....+
T Consensus         1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (274)
T PRK13644          1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL-RPQKGKVLVSGIDTGDFSKLQGIRKLV   79 (274)
T ss_pred             CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEECCccccHHHHHhhe
Confidence            478999999995 567999999999999999999999999999999999977 7889999999977632     112223


Q ss_pred             CCChhh---------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEE
Q 029613           78 GFSAED---------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIE  131 (190)
Q Consensus        78 ~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~  131 (190)
                      +|.+++         ..+++..            ...+..++...++.    ..+..+|+||+|| .+||+++.+|+++ 
T Consensus        80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ll-  158 (274)
T PRK13644         80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECL-  158 (274)
T ss_pred             EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEE-
Confidence            333322         1122211            01123334445553    2367899999999 5999999999999 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHcCCCCCc
Q 029613          132 VFMNMPLELCEARDPKGLYKLARAGKIKGL  161 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~~~~~~~  161 (190)
                       +|||||++||+..+..+++.+++.+..|.
T Consensus       159 -lLDEPt~gLD~~~~~~l~~~l~~l~~~g~  187 (274)
T PRK13644        159 -IFDEVTSMLDPDSGIAVLERIKKLHEKGK  187 (274)
T ss_pred             -EEeCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence             99999999999999999998876433343

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.6e-29  Score=207.16  Aligned_cols=152  Identities=16%  Similarity=0.209  Sum_probs=116.2

Q ss_pred             CcccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613            2 ATVGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN   76 (190)
Q Consensus         2 ~~~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~   76 (190)
                      -+|++++|++++|+ ...+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..    .....
T Consensus         1 ~~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~   79 (277)
T PRK13652          1 MHLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL-KPTSGSVLIRGEPITKENIREVRKF   79 (277)
T ss_pred             CceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHhh
Confidence            04789999999995 457999999999999999999999999999999999977 7889999999976532    11122


Q ss_pred             cCCChhh---------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613           77 LGFSAED---------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        77 i~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      ++|.+++         ..+++...            ..+..++...++..    .+..+|+||+|| .+||+++.+|+++
T Consensus        80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~ll  159 (277)
T PRK13652         80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVL  159 (277)
T ss_pred             eEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            3333222         11222110            11233444445432    377899999999 5999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +|||||++||+..++.+++.+++-
T Consensus       160 --ilDEPt~gLD~~~~~~l~~~l~~l  183 (277)
T PRK13652        160 --VLDEPTAGLDPQGVKELIDFLNDL  183 (277)
T ss_pred             --EEeCCcccCCHHHHHHHHHHHHHH
Confidence              999999999999999999988764

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.96  E-value=8.1e-30  Score=215.82  Aligned_cols=149  Identities=17%  Similarity=0.177  Sum_probs=117.6

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCC--cEEEEcCcccccc--cccccCCC
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGK--LSYILDGDNLRHG--LNKNLGFS   80 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~--g~i~~~g~~~~~~--~~~~i~~~   80 (190)
                      ++++|++++|++..+++++||++.+|++++|+||||||||||+++|+|++ ++.+  |+|.++|.++...  ....++|.
T Consensus         6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~~~G~i~~~g~~~~~~~~~~r~ig~v   84 (362)
T TIGR03258         6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV-KAAGLTGRIAIADRDLTHAPPHKRGLALL   84 (362)
T ss_pred             EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence            68899999999888999999999999999999999999999999999977 7888  9999999876321  11223333


Q ss_pred             hhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613           81 AED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMN  135 (190)
Q Consensus        81 ~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllD  135 (190)
                      .++        ..+++..            -..+..++...++..    .+..||+||+|| ++||+++.+|+++  +||
T Consensus        85 fQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ll--LLD  162 (362)
T TIGR03258        85 FQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVL--LLD  162 (362)
T ss_pred             ECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEc
Confidence            332        2233221            012334455555533    478899999999 6999999999999  999


Q ss_pred             CCchhhhhcChHHHHHHHHcC
Q 029613          136 MPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       136 EP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |||++||...++.+.+.+++.
T Consensus       163 EP~s~LD~~~r~~l~~~l~~l  183 (362)
T TIGR03258       163 EPLSALDANIRANMREEIAAL  183 (362)
T ss_pred             CccccCCHHHHHHHHHHHHHH
Confidence            999999999999999888764

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.96  E-value=1.4e-29  Score=209.84  Aligned_cols=143  Identities=16%  Similarity=0.200  Sum_probs=111.2

Q ss_pred             eccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccCCChhh-----
Q 029613           12 WQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLGFSAED-----   83 (190)
Q Consensus        12 ~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~~~~~~-----   83 (190)
                      |+|+++.+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++...   .+..++|.+++     
T Consensus         1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~   79 (302)
T TIGR01188         1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL-RPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDE   79 (302)
T ss_pred             CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence            4677788999999999999999999999999999999999987 78899999999776321   12234444433     


Q ss_pred             ---HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhh
Q 029613           84 ---RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEA  143 (190)
Q Consensus        84 ---~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~  143 (190)
                         ..+++...            ..+..++..+++..    .+..||+||+|| .+|++++.+|+++  +|||||++||+
T Consensus        80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll--lLDEPt~gLD~  157 (302)
T TIGR01188        80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVL--FLDEPTTGLDP  157 (302)
T ss_pred             CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCCcCCCH
Confidence               22222211            12334455555532    367899999999 6999999999999  99999999999


Q ss_pred             cChHHHHHHHHcCC
Q 029613          144 RDPKGLYKLARAGK  157 (190)
Q Consensus       144 ~~~~~~~~~~~~~~  157 (190)
                      ..++.+++.+++-.
T Consensus       158 ~~~~~l~~~l~~~~  171 (302)
T TIGR01188       158 RTRRAIWDYIRALK  171 (302)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887643

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.3e-29  Score=208.65  Aligned_cols=150  Identities=19%  Similarity=0.183  Sum_probs=116.9

Q ss_pred             ccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------
Q 029613            4 VGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------   71 (190)
Q Consensus         4 ~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------   71 (190)
                      +++++|++++|++     +.+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..       
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~   80 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL-KPSSGTITIAGYHITPETGNKNL   80 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECccccccchH
Confidence            5789999999974     46999999999999999999999999999999999977 7899999999987632       


Q ss_pred             -ccccccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcc-e----eecccCccHHHH-HHHHHh
Q 029613           72 -GLNKNLGFSAED---------RTENIRR------------VGEVAKLFADAGLI-C----IASLISPYRKDR-DACRAM  123 (190)
Q Consensus        72 -~~~~~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-~----~~~~lS~g~kqr-~iaral  123 (190)
                       ..+..++|.+++         ..+++..            ...+..++...++. .    .+..||+||+|| .+||++
T Consensus        81 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral  160 (287)
T PRK13641         81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM  160 (287)
T ss_pred             HHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence             112234444332         1222211            01223445555553 2    267899999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||+..++.+.+.+++-
T Consensus       161 ~~~p~lL--lLDEPt~gLD~~~~~~l~~~l~~l  191 (287)
T PRK13641        161 AYEPEIL--CLDEPAAGLDPEGRKEMMQLFKDY  191 (287)
T ss_pred             HcCCCEE--EEECCCCCCCHHHHHHHHHHHHHH
Confidence            9999999  999999999999999999998864

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.9e-29  Score=205.50  Aligned_cols=151  Identities=18%  Similarity=0.184  Sum_probs=116.3

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      ++++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..    .....++
T Consensus        10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~   88 (265)
T PRK10575         10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ-PPSEGEILLDAQPLESWSSKAFARKVA   88 (265)
T ss_pred             ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCEehhhCCHHHHhhheE
Confidence            3789999999998888999999999999999999999999999999999977 7889999999976531    1111222


Q ss_pred             CChhh--------HHHHHHH----------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCe
Q 029613           79 FSAED--------RTENIRR----------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        79 ~~~~~--------~~~~~~~----------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      |.+++        ..+++..                -..+..++...++..    .+..+|+||+|| .+||+++.+|++
T Consensus        89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l  168 (265)
T PRK10575         89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC  168 (265)
T ss_pred             EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            32221        1222210                012233444445432    367799999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +  +|||||++||...++.+++.+++.
T Consensus       169 l--lLDEPt~~LD~~~~~~~~~~l~~l  193 (265)
T PRK10575        169 L--LLDEPTSALDIAHQVDVLALVHRL  193 (265)
T ss_pred             E--EEcCCcccCCHHHHHHHHHHHHHH
Confidence            9  999999999999999999888764

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.96  E-value=1.9e-29  Score=200.38  Aligned_cols=153  Identities=20%  Similarity=0.181  Sum_probs=116.7

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChh--
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE--   82 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~--   82 (190)
                      ++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.......++|.++  
T Consensus         1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~~~~~~~~~~~~~~~~~q~~   79 (223)
T TIGR03740         1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL-RPTSGEIIFDGHPWTRKDLHKIGSLIESP   79 (223)
T ss_pred             CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEeccccccccEEEEcCCC
Confidence            46889999998888999999999999999999999999999999999987 788999999987653211111222222  


Q ss_pred             ------hHHHHHHHH--------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhh
Q 029613           83 ------DRTENIRRV--------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEA  143 (190)
Q Consensus        83 ------~~~~~~~~~--------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~  143 (190)
                            ...+++...        ..+..++...++..    .+..+|+|++|| .+||+++.+|+++  +|||||++||.
T Consensus        80 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~ll--llDEP~~~LD~  157 (223)
T TIGR03740        80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLL--ILDEPTNGLDP  157 (223)
T ss_pred             CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEE--EECCCccCCCH
Confidence                  122332211        12334455555543    266799999999 6999999999999  99999999999


Q ss_pred             cChHHHHHHHHcCCCCC
Q 029613          144 RDPKGLYKLARAGKIKG  160 (190)
Q Consensus       144 ~~~~~~~~~~~~~~~~~  160 (190)
                      ..++.+++.+++....|
T Consensus       158 ~~~~~l~~~L~~~~~~~  174 (223)
T TIGR03740       158 IGIQELRELIRSFPEQG  174 (223)
T ss_pred             HHHHHHHHHHHHHHHCC
Confidence            99999999998643334

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.9e-29  Score=211.10  Aligned_cols=151  Identities=17%  Similarity=0.145  Sum_probs=117.0

Q ss_pred             ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh---CCCcEEEEcCcccccc----
Q 029613            4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS---RGKLSYILDGDNLRHG----   72 (190)
Q Consensus         4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~---~~~g~i~~~g~~~~~~----   72 (190)
                      +|+++|+++.|+.    ..+++|+||++++||+++|+|+||||||||+++|+|++.+   +.+|.|.++|.++...    
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~   82 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE   82 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence            6899999999976    4699999999999999999999999999999999998742   3689999999876321    


Q ss_pred             c----ccccCCChhhH--------------HHHHHH---------HHHHHHHHHHcCcc-------eeecccCccHHHH-
Q 029613           73 L----NKNLGFSAEDR--------------TENIRR---------VGEVAKLFADAGLI-------CIASLISPYRKDR-  117 (190)
Q Consensus        73 ~----~~~i~~~~~~~--------------~~~~~~---------~~~~~~~~~~~~~~-------~~~~~lS~g~kqr-  117 (190)
                      .    ...++|.+++.              .+.+..         -..+..++...++.       .++..||+||+|| 
T Consensus        83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv  162 (326)
T PRK11022         83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV  162 (326)
T ss_pred             HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence            0    11234443331              111110         11234455666663       2478899999999 


Q ss_pred             HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          118 DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       118 ~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .||||++.+|+++  ++||||++||...+..+++.+++.
T Consensus       163 ~iArAL~~~P~ll--ilDEPts~LD~~~~~~il~lL~~l  199 (326)
T PRK11022        163 MIAMAIACRPKLL--IADEPTTALDVTIQAQIIELLLEL  199 (326)
T ss_pred             HHHHHHHhCCCEE--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence            5999999999999  999999999999999999888764

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.4e-29  Score=205.50  Aligned_cols=151  Identities=17%  Similarity=0.193  Sum_probs=117.9

Q ss_pred             cccccCcceeccC--ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613            3 TVGNSTNIFWQES--PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN   76 (190)
Q Consensus         3 ~~l~~~~l~~~~~--~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~   76 (190)
                      +|++++|++++|+  ...+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++..    ..+..
T Consensus         6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~   84 (271)
T PRK13632          6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL-KPQSGEIKIDGITISKENLKEIRKK   84 (271)
T ss_pred             eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEecCcCCHHHHhcc
Confidence            4789999999995  467999999999999999999999999999999999987 7889999999987642    12233


Q ss_pred             cCCChhhH---------HHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613           77 LGFSAEDR---------TENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        77 i~~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      ++|.+++.         .+++...            ..+..++...++..    .+..+|+||+|| .+||+++.+|+++
T Consensus        85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll  164 (271)
T PRK13632         85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEII  164 (271)
T ss_pred             eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            44444321         1222110            01223444455532    367899999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +|||||++||+..++.+++.+++.
T Consensus       165 --lLDEP~~gLD~~~~~~l~~~l~~~  188 (271)
T PRK13632        165 --IFDESTSMLDPKGKREIKKIMVDL  188 (271)
T ss_pred             --EEeCCcccCCHHHHHHHHHHHHHH
Confidence              999999999999999999999864

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.96  E-value=1.4e-29  Score=201.45  Aligned_cols=150  Identities=23%  Similarity=0.219  Sum_probs=114.5

Q ss_pred             ccccCcceeccCcc----ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------c
Q 029613            4 VGNSTNIFWQESPI----GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------G   72 (190)
Q Consensus         4 ~l~~~~l~~~~~~~----~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~   72 (190)
                      |++++|++++|++.    ++++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..       .
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~   79 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL-KPTSGSIIFDGKDLLKLSRRLRKI   79 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEccccchhhHHH
Confidence            47889999999765    7999999999999999999999999999999999977 7889999999976532       1


Q ss_pred             cccccCCChhhH----------HHHHHH-------------HHHH-HHHHHHcCcc-----eeecccCccHHHH-HHHHH
Q 029613           73 LNKNLGFSAEDR----------TENIRR-------------VGEV-AKLFADAGLI-----CIASLISPYRKDR-DACRA  122 (190)
Q Consensus        73 ~~~~i~~~~~~~----------~~~~~~-------------~~~~-~~~~~~~~~~-----~~~~~lS~g~kqr-~iara  122 (190)
                      .+..++|.+++.          .+++..             .... ..++...++.     ..+..+|+||+|| .+||+
T Consensus        80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara  159 (228)
T cd03257          80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA  159 (228)
T ss_pred             hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence            112233332221          121110             0111 1344444542     2367799999999 69999


Q ss_pred             hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++.+|+++  +|||||++||+..++.+++.+++-
T Consensus       160 l~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~  191 (228)
T cd03257         160 LALNPKLL--IADEPTSALDVSVQAQILDLLKKL  191 (228)
T ss_pred             HhcCCCEE--EecCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999  999999999999999999998764

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.96  E-value=2.2e-30  Score=199.38  Aligned_cols=139  Identities=22%  Similarity=0.270  Sum_probs=108.0

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc------cccccC
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG------LNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~------~~~~i~   78 (190)
                      ++++|++++|+..++++++||++.+|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++...      ....++
T Consensus         1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   79 (178)
T cd03229           1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILIDGEDLTDLEDELPPLRRRIG   79 (178)
T ss_pred             CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccchhHHHHhhcEE
Confidence            46789999998888999999999999999999999999999999999977 77899999999766421      111223


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHcCcceeecc-cCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           79 FSAEDRTENIRRVGEVAKLFADAGLICIASL-ISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |.+++..           .+....+...... +|+||+|| .+||+++.+|+++  +|||||++||...+..+.+.+++-
T Consensus        80 ~~~q~~~-----------~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~ll--ilDEP~~~LD~~~~~~l~~~l~~~  146 (178)
T cd03229          80 MVFQDFA-----------LFPHLTVLENIALGLSGGQQQRVALARALAMDPDVL--LLDEPTSALDPITRREVRALLKSL  146 (178)
T ss_pred             EEecCCc-----------cCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            3332210           0101111111111 99999999 6999999999999  999999999999999999988864


Q ss_pred             C
Q 029613          157 K  157 (190)
Q Consensus       157 ~  157 (190)
                      +
T Consensus       147 ~  147 (178)
T cd03229         147 Q  147 (178)
T ss_pred             H
Confidence            3

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.3e-29  Score=205.02  Aligned_cols=150  Identities=17%  Similarity=0.232  Sum_probs=116.3

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      +|+++|++++|++..+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..    .....++|
T Consensus         7 ~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~   85 (265)
T PRK10253          7 RLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM-TPAHGHVWLDGEHIQHYASKEVARRIGL   85 (265)
T ss_pred             EEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence            789999999999888999999999999999999999999999999999977 7889999999976532    11112333


Q ss_pred             Chhh--------HHHHHHH----------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeE
Q 029613           80 SAED--------RTENIRR----------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        80 ~~~~--------~~~~~~~----------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      .+++        ..+++..                -..+..++...++.    ..+..+|+||+|| .+||+++.+|+++
T Consensus        86 v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll  165 (265)
T PRK10253         86 LAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIM  165 (265)
T ss_pred             eeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEE
Confidence            3322        1122110                01222334444543    2377899999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +|||||++||...++.+++.+++.
T Consensus       166 --llDEPt~gLD~~~~~~l~~~L~~l  189 (265)
T PRK10253        166 --LLDEPTTWLDISHQIDLLELLSEL  189 (265)
T ss_pred             --EEeCccccCCHHHHHHHHHHHHHH
Confidence              999999999999999999988764

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.96  E-value=1.3e-29  Score=194.31  Aligned_cols=141  Identities=18%  Similarity=0.251  Sum_probs=109.3

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCCh
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFSA   81 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~~   81 (190)
                      ++++|++++|++.++++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..   ..+..++|.+
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (173)
T cd03230           1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL-KPDSGEIKVLGKDIKKEPEEVKRRIGYLP   79 (173)
T ss_pred             CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcccchHhhhccEEEEe
Confidence            46789999998778999999999999999999999999999999999977 7789999999976642   1122334444


Q ss_pred             hhHHHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613           82 EDRTENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      ++..-           +....+.... .+|+||+|| .+||+++.+|+++  +|||||++||...++.+++.+++-..+|
T Consensus        80 q~~~~-----------~~~~tv~~~~-~LS~G~~qrv~laral~~~p~il--llDEPt~~LD~~~~~~l~~~l~~~~~~g  145 (173)
T cd03230          80 EEPSL-----------YENLTVRENL-KLSGGMKQRLALAQALLHDPELL--ILDEPTSGLDPESRREFWELLRELKKEG  145 (173)
T ss_pred             cCCcc-----------ccCCcHHHHh-hcCHHHHHHHHHHHHHHcCCCEE--EEeCCccCCCHHHHHHHHHHHHHHHHCC
Confidence            33110           0000000000 189999999 6999999999999  9999999999999999999998753334

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4e-29  Score=203.84  Aligned_cols=152  Identities=20%  Similarity=0.151  Sum_probs=116.7

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------c
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------G   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~   72 (190)
                      ++|+++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++.+    +.+|+|.++|.++..      .
T Consensus        18 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~   97 (267)
T PRK14235         18 IKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVE   97 (267)
T ss_pred             ceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHH
Confidence            368999999999988899999999999999999999999999999999998742    478999999976531      1


Q ss_pred             cccccCCChhh-------HHHHHHH--------------HHHHHHHHHHcCcc--------eeecccCccHHHH-HHHHH
Q 029613           73 LNKNLGFSAED-------RTENIRR--------------VGEVAKLFADAGLI--------CIASLISPYRKDR-DACRA  122 (190)
Q Consensus        73 ~~~~i~~~~~~-------~~~~~~~--------------~~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iara  122 (190)
                      .+..++|.+++       ..+++..              ...+..++...++.        ..+..+|+||+|| .+||+
T Consensus        98 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara  177 (267)
T PRK14235         98 LRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARA  177 (267)
T ss_pred             HhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence            12223333222       2222211              01123344444542        2367799999999 69999


Q ss_pred             hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++.+|+++  +|||||++||+..++.+++.+++.
T Consensus       178 l~~~p~ll--lLDEPt~~LD~~~~~~l~~~L~~l  209 (267)
T PRK14235        178 IAVSPEVI--LMDEPCSALDPIATAKVEELIDEL  209 (267)
T ss_pred             HHcCCCEE--EEeCCCcCCCHHHHHHHHHHHHHH
Confidence            99999999  999999999999999999999864

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.4e-29  Score=202.29  Aligned_cols=153  Identities=20%  Similarity=0.180  Sum_probs=116.3

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC-----CcEEEEcCccccc----
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG-----KLSYILDGDNLRH----   71 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~-----~g~i~~~g~~~~~----   71 (190)
                      |.++++++|++++|+++.+++++||++.+|++++|+|+||||||||+++|+|++ ++.     +|.|.++|.++..    
T Consensus         1 ~~~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~~~~~~G~v~~~g~~~~~~~~~   79 (251)
T PRK14249          1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN-DIVSGARLEGAVLLDNENIYSPNLD   79 (251)
T ss_pred             CCceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CccccCCcccEEEECCEEccccccC
Confidence            788999999999999888999999999999999999999999999999999987 443     6999999876531    


Q ss_pred             --ccccccCCChhh-------HHHHHHH------------H-HHHHHHHHHcCc--------ceeecccCccHHHH-HHH
Q 029613           72 --GLNKNLGFSAED-------RTENIRR------------V-GEVAKLFADAGL--------ICIASLISPYRKDR-DAC  120 (190)
Q Consensus        72 --~~~~~i~~~~~~-------~~~~~~~------------~-~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~ia  120 (190)
                        ..+..++|.+++       ..+++..            . ..+...+...++        ...+..+|+||+|| .+|
T Consensus        80 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la  159 (251)
T PRK14249         80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIA  159 (251)
T ss_pred             hHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence              112223333332       1222211            0 011112222332        13367799999999 699


Q ss_pred             HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+++.+|+++  +|||||++||+..++.+++.+++.
T Consensus       160 ral~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~  193 (251)
T PRK14249        160 RVLAIEPEVI--LMDEPCSALDPVSTMRIEELMQEL  193 (251)
T ss_pred             HHHhcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence            9999999999  999999999999999999988865

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.6e-29  Score=206.85  Aligned_cols=150  Identities=17%  Similarity=0.168  Sum_probs=117.9

Q ss_pred             ccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------
Q 029613            4 VGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------   71 (190)
Q Consensus         4 ~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------   71 (190)
                      +++++|++++|++     .++++++||++++|++++|+|+||||||||+++|+|++ ++..|.|.++|.++..       
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~-~p~~G~i~~~g~~i~~~~~~~~~   80 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL-KPTTGTVTVDDITITHKTKDKYI   80 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECccccccchH
Confidence            4789999999963     36999999999999999999999999999999999977 7889999999977632       


Q ss_pred             -ccccccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcc-e----eecccCccHHHH-HHHHHh
Q 029613           72 -GLNKNLGFSAED---------RTENIRR------------VGEVAKLFADAGLI-C----IASLISPYRKDR-DACRAM  123 (190)
Q Consensus        72 -~~~~~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-~----~~~~lS~g~kqr-~iaral  123 (190)
                       ..+..++|.+++         ..+++..            ...+..++...++. .    .+..||+||+|| .+||++
T Consensus        81 ~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL  160 (286)
T PRK13646         81 RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL  160 (286)
T ss_pred             HHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence             123344554443         1122211            01223445556653 2    377899999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||+..+..+.+.+++.
T Consensus       161 ~~~p~il--llDEPt~~LD~~~~~~l~~~l~~l  191 (286)
T PRK13646        161 AMNPDII--VLDEPTAGLDPQSKRQVMRLLKSL  191 (286)
T ss_pred             HhCCCEE--EEECCcccCCHHHHHHHHHHHHHH
Confidence            9999999  999999999999999999988864

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.96  E-value=1.4e-29  Score=223.35  Aligned_cols=153  Identities=18%  Similarity=0.172  Sum_probs=119.5

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccc
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNK   75 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~   75 (190)
                      |.+|++++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++...     .+.
T Consensus         8 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~   86 (510)
T PRK15439          8 APPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV-PPDSGTLEIGGNPCARLTPAKAHQL   86 (510)
T ss_pred             CCceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHHHhC
Confidence            345799999999999888999999999999999999999999999999999987 78899999999765321     011


Q ss_pred             ccCCChhh--------HHHHHHH--------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613           76 NLGFSAED--------RTENIRR--------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFM  134 (190)
Q Consensus        76 ~i~~~~~~--------~~~~~~~--------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vll  134 (190)
                      .++|.+++        ..+++..        -..+..++...++..    .+..||+||+|| .+||+++.+|+++  +|
T Consensus        87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~ll--lL  164 (510)
T PRK15439         87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRIL--IL  164 (510)
T ss_pred             CEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEE--EE
Confidence            23343332        1222210        112334455555532    367899999999 6999999999999  99


Q ss_pred             eCCchhhhhcChHHHHHHHHcC
Q 029613          135 NMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       135 DEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ||||++||+..++.+++.+++.
T Consensus       165 DEPt~~LD~~~~~~l~~~l~~~  186 (510)
T PRK15439        165 DEPTASLTPAETERLFSRIREL  186 (510)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999988764

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=4.3e-29  Score=194.74  Aligned_cols=148  Identities=11%  Similarity=0.043  Sum_probs=111.4

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChh-
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE-   82 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~-   82 (190)
                      |++++|++++|+...+++ +||++++|++++|+|+||||||||+++|+|++ ++.+|.+.++|.++.......++|.++ 
T Consensus         1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~   78 (195)
T PRK13541          1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIM-QPSSGNIYYKNCNINNIAKPYCTYIGHN   78 (195)
T ss_pred             CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCcccChhhhhhEEeccCC
Confidence            478999999998765665 99999999999999999999999999999977 788999999997753211111122221 


Q ss_pred             -------hHHHHHHHH-------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhh
Q 029613           83 -------DRTENIRRV-------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEA  143 (190)
Q Consensus        83 -------~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~  143 (190)
                             ...+++...       ..+..++...++..    .+..+|+||+|| .+||+++.+|+++  +|||||++||+
T Consensus        79 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~l--llDEP~~~LD~  156 (195)
T PRK13541         79 LGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLW--LLDEVETNLSK  156 (195)
T ss_pred             cCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCcccCCH
Confidence                   112222211       12233334444432    367799999999 6999999999999  99999999999


Q ss_pred             cChHHHHHHHHc
Q 029613          144 RDPKGLYKLARA  155 (190)
Q Consensus       144 ~~~~~~~~~~~~  155 (190)
                      ..++.+.+.+++
T Consensus       157 ~~~~~l~~~l~~  168 (195)
T PRK13541        157 ENRDLLNNLIVM  168 (195)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998874

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.96  E-value=1.4e-29  Score=193.73  Aligned_cols=136  Identities=23%  Similarity=0.238  Sum_probs=107.4

Q ss_pred             cccCcceeccCcc--ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----cccccC
Q 029613            5 GNSTNIFWQESPI--GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----LNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~~--~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----~~~~i~   78 (190)
                      ++++|++++|++.  .+++++||++++|++++|+||||||||||+++|+|++ ++.+|++.++|.++...    .+..++
T Consensus         1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (171)
T cd03228           1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY-DPTSGEILIDGVDLRDLDLESLRKNIA   79 (171)
T ss_pred             CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence            4678999999875  7999999999999999999999999999999999987 77899999999876421    112233


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613           79 FSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      |.+++.. ..    . ....+..        +|+||+|| .+||+++.+|+++  +|||||++||...+..+.+.+++-.
T Consensus        80 ~~~~~~~-~~----~-~t~~e~l--------LS~G~~~rl~la~al~~~p~ll--llDEP~~gLD~~~~~~l~~~l~~~~  143 (171)
T cd03228          80 YVPQDPF-LF----S-GTIRENI--------LSGGQRQRIAIARALLRDPPIL--ILDEATSALDPETEALILEALRALA  143 (171)
T ss_pred             EEcCCch-hc----c-chHHHHh--------hCHHHHHHHHHHHHHhcCCCEE--EEECCCcCCCHHHHHHHHHHHHHhc
Confidence            3333221 00    0 0011111        99999999 6999999999999  9999999999999999999998653

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.7e-29  Score=222.67  Aligned_cols=153  Identities=18%  Similarity=0.165  Sum_probs=119.0

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccc
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNK   75 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~   75 (190)
                      |.+|++++|++++|+++.+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++...     .+.
T Consensus         2 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~   80 (510)
T PRK09700          2 ATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH-EPTKGTITINNINYNKLDHKLAAQL   80 (510)
T ss_pred             CCceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc-CCCccEEEECCEECCCCCHHHHHHC
Confidence            346899999999999888999999999999999999999999999999999987 77899999999765321     112


Q ss_pred             ccCCChhh--------HHHHHH-------------------HHHHHHHHHHHcCcce----eecccCccHHHH-HHHHHh
Q 029613           76 NLGFSAED--------RTENIR-------------------RVGEVAKLFADAGLIC----IASLISPYRKDR-DACRAM  123 (190)
Q Consensus        76 ~i~~~~~~--------~~~~~~-------------------~~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iaral  123 (190)
                      .++|.+++        ..+++.                   ....+..++...++..    .+..||+||+|| .+||++
T Consensus        81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al  160 (510)
T PRK09700         81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTL  160 (510)
T ss_pred             CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH
Confidence            23333322        111111                   0112334455555532    367899999999 599999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||+..+..+++.+++.
T Consensus       161 ~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~l  191 (510)
T PRK09700        161 MLDAKVI--IMDEPTSSLTNKEVDYLFLIMNQL  191 (510)
T ss_pred             hcCCCEE--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence            9999999  999999999999999999888764

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.8e-29  Score=202.03  Aligned_cols=154  Identities=21%  Similarity=0.156  Sum_probs=117.7

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc-----
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH-----   71 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~-----   71 (190)
                      |.+|++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++.+    +.+|.|.++|.++..     
T Consensus         1 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   80 (251)
T PRK14270          1 MKIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV   80 (251)
T ss_pred             CccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence            77899999999999888899999999999999999999999999999999997732    268999999987632     


Q ss_pred             -ccccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHH
Q 029613           72 -GLNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACR  121 (190)
Q Consensus        72 -~~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iar  121 (190)
                       ..+..++|.+++       ..+++...             ..+..++...++        ...+..+|+||+|| .+||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar  160 (251)
T PRK14270         81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIAR  160 (251)
T ss_pred             HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence             112223333322       12222110             112233344443        12367799999999 6999


Q ss_pred             HhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          122 AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       122 all~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++.+|+++  +|||||++||+..+..+++.+++.
T Consensus       161 al~~~p~ll--llDEP~~~LD~~~~~~l~~~L~~~  193 (251)
T PRK14270        161 TIAVKPDVI--LMDEPTSALDPISTLKIEDLMVEL  193 (251)
T ss_pred             HHhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            999999999  999999999999999999988864

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.96  E-value=9.5e-30  Score=195.01  Aligned_cols=139  Identities=22%  Similarity=0.260  Sum_probs=107.6

Q ss_pred             cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      ++++|++++|++  ..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..    .....++
T Consensus         1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL-RPTSGRVRLDGADISQWDPNELGDHVG   79 (173)
T ss_pred             CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeEEECCEEcccCCHHHHHhheE
Confidence            467899999975  56999999999999999999999999999999999987 7889999999987642    1112233


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613           79 FSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      |.+++..- ..     ....+.      .  +|+||+|| .+||+++.+|+++  +|||||++||+..++.+.+.+++-.
T Consensus        80 ~~~q~~~~-~~-----~tv~~~------l--LS~G~~qrv~la~al~~~p~~l--llDEPt~~LD~~~~~~l~~~l~~~~  143 (173)
T cd03246          80 YLPQDDEL-FS-----GSIAEN------I--LSGGQRQRLGLARALYGNPRIL--VLDEPNSHLDVEGERALNQAIAALK  143 (173)
T ss_pred             EECCCCcc-cc-----CcHHHH------C--cCHHHHHHHHHHHHHhcCCCEE--EEECCccccCHHHHHHHHHHHHHHH
Confidence            33332110 00     001111      1  89999999 6999999999999  9999999999999999999987643


Q ss_pred             CCC
Q 029613          158 IKG  160 (190)
Q Consensus       158 ~~~  160 (190)
                      ..|
T Consensus       144 ~~~  146 (173)
T cd03246         144 AAG  146 (173)
T ss_pred             hCC
Confidence            334

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.96  E-value=9.7e-30  Score=195.72  Aligned_cols=139  Identities=19%  Similarity=0.175  Sum_probs=109.3

Q ss_pred             cccCcceeccCcc--ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCC
Q 029613            5 GNSTNIFWQESPI--GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~~~--~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~   79 (190)
                      ++++|++++|++.  ++++++||++++|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++..   ..+..++|
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~   79 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL-KPQQGEITLDGVPVSDLEKALSSLISV   79 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence            4678999999765  7999999999999999999999999999999999977 7889999999986532   11222333


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613           80 SAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      .+++..- ..  ..+   .+     .++..+|+||+|| .+||+++.+|+++  +|||||++||...++.+++.+++..
T Consensus        80 ~~q~~~~-~~--~tv---~~-----~i~~~LS~G~~qrv~laral~~~p~~l--llDEP~~~LD~~~~~~l~~~l~~~~  145 (178)
T cd03247          80 LNQRPYL-FD--TTL---RN-----NLGRRFSGGERQRLALARILLQDAPIV--LLDEPTVGLDPITERQLLSLIFEVL  145 (178)
T ss_pred             EccCCee-ec--ccH---HH-----hhcccCCHHHHHHHHHHHHHhcCCCEE--EEECCcccCCHHHHHHHHHHHHHHc
Confidence            3332110 00  000   00     0166799999999 6999999999999  9999999999999999999998753

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=5e-29  Score=201.45  Aligned_cols=154  Identities=17%  Similarity=0.142  Sum_probs=117.2

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hC---CCcEEEEcCccccc-----
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SR---GKLSYILDGDNLRH-----   71 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~---~~g~i~~~g~~~~~-----   71 (190)
                      |+..++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++. .+   .+|+|.++|.++..     
T Consensus         1 ~~~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~   80 (252)
T PRK14256          1 MNNKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP   80 (252)
T ss_pred             CCcEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence            6678899999999988889999999999999999999999999999999999873 13   58999999977531     


Q ss_pred             -ccccccCCChhh--------HHHHHHH------------H-HHHHHHHHHcCcc--------eeecccCccHHHH-HHH
Q 029613           72 -GLNKNLGFSAED--------RTENIRR------------V-GEVAKLFADAGLI--------CIASLISPYRKDR-DAC  120 (190)
Q Consensus        72 -~~~~~i~~~~~~--------~~~~~~~------------~-~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~ia  120 (190)
                       ..+..++|.+++        ..+++..            . ..+...+...++.        ..+..+|+||+|| .+|
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la  160 (252)
T PRK14256         81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA  160 (252)
T ss_pred             HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHH
Confidence             112223333322        1222211            0 1122333344432        2366799999999 699


Q ss_pred             HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+++.+|+++  +|||||++||...++.+++.+++-
T Consensus       161 ral~~~p~ll--llDEP~~gLD~~~~~~l~~~l~~~  194 (252)
T PRK14256        161 RTIAVKPEVI--LMDEPASALDPISTLKIEELIEEL  194 (252)
T ss_pred             HHHhcCCCEE--EEcCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999  999999999999999999998864

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.96  E-value=3.7e-29  Score=197.80  Aligned_cols=151  Identities=15%  Similarity=0.177  Sum_probs=116.1

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-cccccCCCh
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-LNKNLGFSA   81 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-~~~~i~~~~   81 (190)
                      +|++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++... ....++|.+
T Consensus        10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~i~~~~~~~~i~~~~   88 (214)
T PRK13543         10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL-HVESGQIQIDGKTATRGDRSRFMAYLG   88 (214)
T ss_pred             ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCCeeEEECCEEccchhhhhceEEee
Confidence            3789999999998888999999999999999999999999999999999977 78899999999765321 111122222


Q ss_pred             hh--------HHHHHHHH---------HHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613           82 ED--------RTENIRRV---------GEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE  139 (190)
Q Consensus        82 ~~--------~~~~~~~~---------~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~  139 (190)
                      +.        ..+++...         ......+...++.    ..+..+|+||+|| .+||+++.+|+++  +|||||+
T Consensus        89 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll--llDEPt~  166 (214)
T PRK13543         89 HLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLW--LLDEPYA  166 (214)
T ss_pred             cCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCcc
Confidence            21        22222110         1122334444442    2367799999999 6999999999999  9999999


Q ss_pred             hhhhcChHHHHHHHHcC
Q 029613          140 LCEARDPKGLYKLARAG  156 (190)
Q Consensus       140 ~ld~~~~~~~~~~~~~~  156 (190)
                      +||...++.+.+.+++.
T Consensus       167 ~LD~~~~~~l~~~l~~~  183 (214)
T PRK13543        167 NLDLEGITLVNRMISAH  183 (214)
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            99999999999988764

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.96  E-value=3.4e-29  Score=202.46  Aligned_cols=149  Identities=16%  Similarity=0.172  Sum_probs=115.0

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------------
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------------   71 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------------   71 (190)
                      ++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..             
T Consensus         1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~~   79 (252)
T TIGR03005         1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE-PIDEGQIQVEGEQLYHMPGRNGPLVPADE   79 (252)
T ss_pred             CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccccccccch
Confidence            46889999998888999999999999999999999999999999999977 7889999999976521             


Q ss_pred             ----ccccccCCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHH
Q 029613           72 ----GLNKNLGFSAED--------RTENIRR-------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACR  121 (190)
Q Consensus        72 ----~~~~~i~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iar  121 (190)
                          ..+..++|.+++        ..+++..             ...+...+...++..    .+..+|+||+|| .+||
T Consensus        80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar  159 (252)
T TIGR03005        80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR  159 (252)
T ss_pred             hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence                112223333222        1222211             012233444555532    367799999999 6999


Q ss_pred             HhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          122 AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       122 all~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++.+|+++  +|||||++||+..+..+++.+++-
T Consensus       160 al~~~p~ll--llDEP~~~LD~~~~~~l~~~l~~~  192 (252)
T TIGR03005       160 ALAMRPKVM--LFDEVTSALDPELVGEVLNVIRRL  192 (252)
T ss_pred             HHHcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            999999999  999999999999999999888764

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=5.1e-29  Score=201.61  Aligned_cols=153  Identities=20%  Similarity=0.197  Sum_probs=115.9

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------c
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------G   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~   72 (190)
                      +|++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++.+    +.+|.|.++|.++..      .
T Consensus         6 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   85 (254)
T PRK14273          6 AIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE   85 (254)
T ss_pred             ceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence            378999999999888899999999999999999999999999999999998742    258999999976531      1


Q ss_pred             cccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHh
Q 029613           73 LNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAM  123 (190)
Q Consensus        73 ~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iaral  123 (190)
                      .+..++|.+++       ..+++...             ..+...+...++        ...+..+|+||+|| .+||++
T Consensus        86 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral  165 (254)
T PRK14273         86 LRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL  165 (254)
T ss_pred             HhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence            12233443332       12222110             112222333332        22367799999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      +.+|+++  +|||||++||...+..+++.+++..
T Consensus       166 ~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~~  197 (254)
T PRK14273        166 AIEPNVI--LMDEPTSALDPISTGKIEELIINLK  197 (254)
T ss_pred             HcCCCEE--EEeCCCcccCHHHHHHHHHHHHHHh
Confidence            9999999  9999999999999999999998753

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4e-29  Score=203.99  Aligned_cols=151  Identities=17%  Similarity=0.168  Sum_probs=116.4

Q ss_pred             cccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613            3 TVGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN   76 (190)
Q Consensus         3 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~   76 (190)
                      +|++++|++++|++  ..+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++..    ..+..
T Consensus         6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~   84 (269)
T PRK13648          6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE-KVKSGEIFYNNQAITDDNFEKLRKH   84 (269)
T ss_pred             ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHhh
Confidence            47899999999975  45999999999999999999999999999999999987 7889999999977532    11223


Q ss_pred             cCCChhhH---------HHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613           77 LGFSAEDR---------TENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        77 i~~~~~~~---------~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      ++|.+++.         .+++..            ...+..++...++..    .+..+|+||+|| .+||+++.+|+++
T Consensus        85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll  164 (269)
T PRK13648         85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVI  164 (269)
T ss_pred             eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            34433321         111110            012233444455432    367799999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +|||||++||+..++.+.+.+++-
T Consensus       165 --lLDEPt~~LD~~~~~~l~~~L~~~  188 (269)
T PRK13648        165 --ILDEATSMLDPDARQNLLDLVRKV  188 (269)
T ss_pred             --EEeCCcccCCHHHHHHHHHHHHHH
Confidence              999999999999999999988764

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3.8e-29  Score=204.95  Aligned_cols=153  Identities=16%  Similarity=0.223  Sum_probs=118.2

Q ss_pred             CCcccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cc
Q 029613            1 MATVGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GL   73 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~   73 (190)
                      |++|++++|++++|++   ..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..    ..
T Consensus         1 m~~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~i~~~~~~~~   79 (277)
T PRK13642          1 MNKILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF-EEFEGKVKIDGELLTAENVWNL   79 (277)
T ss_pred             CCceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCCEEEECCEECCcCCHHHH
Confidence            7778999999999974   35899999999999999999999999999999999987 7889999999977532    11


Q ss_pred             ccccCCChhh---------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613           74 NKNLGFSAED---------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        74 ~~~i~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~  127 (190)
                      ...++|.+++         ..+++...            ..+..++...++..    .+..+|+||+|| .+||+++.+|
T Consensus        80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p  159 (277)
T PRK13642         80 RRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP  159 (277)
T ss_pred             hcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            2233443332         11222110            11223344444432    367799999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++  +|||||++||+..++.+++.+++-
T Consensus       160 ~ll--llDEPt~~LD~~~~~~l~~~l~~l  186 (277)
T PRK13642        160 EII--ILDESTSMLDPTGRQEIMRVIHEI  186 (277)
T ss_pred             CEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            999  999999999999999999998754

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.96  E-value=2.4e-29  Score=200.66  Aligned_cols=149  Identities=18%  Similarity=0.151  Sum_probs=113.3

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCC
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~   79 (190)
                      |+++|+++.|++.++++++||++++|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++...     ....++|
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (230)
T TIGR03410         1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL-PVKSGSIRLDGEDITKLPPHERARAGIAY   79 (230)
T ss_pred             CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence            46889999999888999999999999999999999999999999999987 78899999998765321     1223344


Q ss_pred             Chhh--------HHHHHHHH--------H-HHHHHHHHcC-----cceeecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613           80 SAED--------RTENIRRV--------G-EVAKLFADAG-----LICIASLISPYRKDR-DACRAMLPDSNFIEVFMNM  136 (190)
Q Consensus        80 ~~~~--------~~~~~~~~--------~-~~~~~~~~~~-----~~~~~~~lS~g~kqr-~iarall~~~~il~vllDE  136 (190)
                      .+++        ..+++...        . ....++...+     ....+..+|+||+|| .+||+++.+|+++  +|||
T Consensus        80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~il--llDE  157 (230)
T TIGR03410        80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLL--LLDE  157 (230)
T ss_pred             eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EecC
Confidence            4332        11222110        0 0111222222     123467799999999 6999999999999  9999


Q ss_pred             CchhhhhcChHHHHHHHHcC
Q 029613          137 PLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       137 P~~~ld~~~~~~~~~~~~~~  156 (190)
                      ||++||+..++.+++.+++-
T Consensus       158 Pt~~LD~~~~~~l~~~l~~~  177 (230)
T TIGR03410       158 PTEGIQPSIIKDIGRVIRRL  177 (230)
T ss_pred             CcccCCHHHHHHHHHHHHHH
Confidence            99999999999999988864

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=8.4e-29  Score=189.69  Aligned_cols=151  Identities=20%  Similarity=0.219  Sum_probs=114.0

Q ss_pred             CcccccCcceeccCccc--cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-cccccC
Q 029613            2 ATVGNSTNIFWQESPIG--RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-LNKNLG   78 (190)
Q Consensus         2 ~~~l~~~~l~~~~~~~~--~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-~~~~i~   78 (190)
                      -.++.+++++.+|.+++  +++|+|+++.+|+.++++||||||||||+++++|+. +|..|.|.++++.+..+ ....+-
T Consensus         1 M~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~-~P~~G~i~l~~r~i~gPgaergvV   79 (259)
T COG4525           1 MCMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV-TPSRGSIQLNGRRIEGPGAERGVV   79 (259)
T ss_pred             CceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc-CcccceEEECCEeccCCCccceeE
Confidence            03788999999998877  999999999999999999999999999999999987 88999999999876431 111111


Q ss_pred             CChhh------HHHHH------------HHHHHHHHHHHHcCcc----eeecccCccHHHHH-HHHHhCCCCCeEEEEee
Q 029613           79 FSAED------RTENI------------RRVGEVAKLFADAGLI----CIASLISPYRKDRD-ACRAMLPDSNFIEVFMN  135 (190)
Q Consensus        79 ~~~~~------~~~~~------------~~~~~~~~~~~~~~~~----~~~~~lS~g~kqr~-iarall~~~~il~vllD  135 (190)
                      |..+.      ..+|.            .+.....+.+...++.    .++..||||||||. +|||+..+|+++  +||
T Consensus        80 FQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~L--lLD  157 (259)
T COG4525          80 FQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLL--LLD  157 (259)
T ss_pred             eccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceE--eec
Confidence            11111      11111            1111223344555554    35888999999996 999999999999  999


Q ss_pred             CCchhhhhcChHHHHHHHHc
Q 029613          136 MPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       136 EP~~~ld~~~~~~~~~~~~~  155 (190)
                      ||+.+||.-.++.+.+.+-+
T Consensus       158 EPfgAlDa~tRe~mQelLld  177 (259)
T COG4525         158 EPFGALDALTREQMQELLLD  177 (259)
T ss_pred             CchhhHHHHHHHHHHHHHHH
Confidence            99999999888877666543

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.96  E-value=3.8e-29  Score=204.16  Aligned_cols=148  Identities=20%  Similarity=0.227  Sum_probs=113.8

Q ss_pred             ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----c----cccc
Q 029613            6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----L----NKNL   77 (190)
Q Consensus         6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----~----~~~i   77 (190)
                      ..+|+++.|+...+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++...    .    ...+
T Consensus        26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~-~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i  104 (269)
T cd03294          26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI-EPTSGKVLIDGQDIAAMSRKELRELRRKKI  104 (269)
T ss_pred             hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence            4568888888888999999999999999999999999999999999977 78899999999765320    0    1223


Q ss_pred             CCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613           78 GFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEV  132 (190)
Q Consensus        78 ~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~v  132 (190)
                      +|.+++        ..+++..            ...+..++...++..    .+..+|+||+|| .+||+++.+|+++  
T Consensus       105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~il--  182 (269)
T cd03294         105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDIL--  182 (269)
T ss_pred             EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE--
Confidence            333332        1222211            012233445555532    367899999999 6999999999999  


Q ss_pred             EeeCCchhhhhcChHHHHHHHHcC
Q 029613          133 FMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       133 llDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +|||||++||...++.+++.+++-
T Consensus       183 lLDEPt~~LD~~~~~~l~~~l~~~  206 (269)
T cd03294         183 LMDEAFSALDPLIRREMQDELLRL  206 (269)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999988764

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.6e-29  Score=192.62  Aligned_cols=149  Identities=20%  Similarity=0.249  Sum_probs=113.3

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccc----ccccCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGL----NKNLGF   79 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~----~~~i~~   79 (190)
                      |++++|++|+|+.+.+++++|+++++|.+++|+||||||||||+.++++++ +.++|.|.++|.++....    ...++.
T Consensus         1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~-~~d~G~i~i~g~~~~~~~s~~LAk~lSI   79 (252)
T COG4604           1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL-KKDSGEITIDGLELTSTPSKELAKKLSI   79 (252)
T ss_pred             CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc-cccCceEEEeeeecccCChHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999988 788999999998875311    000111


Q ss_pred             Chhh-------------------------HHHHHHHHHHHHHHHHHcCcc-eeecccCccHHHHH-HHHHhCCCCCeEEE
Q 029613           80 SAED-------------------------RTENIRRVGEVAKLFADAGLI-CIASLISPYRKDRD-ACRAMLPDSNFIEV  132 (190)
Q Consensus        80 ~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~lS~g~kqr~-iarall~~~~il~v  132 (190)
                      ..++                         ..+....+.+..+.+...++. .+...||||||||+ +|..++++.+++  
T Consensus        80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyv--  157 (252)
T COG4604          80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYV--  157 (252)
T ss_pred             HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEE--
Confidence            1110                         112222333333333333332 24678999999997 999999999999  


Q ss_pred             EeeCCchhhhhcChHHHHHHHHc
Q 029613          133 FMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       133 llDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +||||+++||-+-.-++.+.+++
T Consensus       158 lLDEPLNNLDmkHsv~iMk~Lrr  180 (252)
T COG4604         158 LLDEPLNNLDMKHSVQIMKILRR  180 (252)
T ss_pred             EecCcccccchHHHHHHHHHHHH
Confidence            99999999998877666666554

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.7e-29  Score=203.65  Aligned_cols=151  Identities=19%  Similarity=0.149  Sum_probs=115.2

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------cc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------GL   73 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~~   73 (190)
                      +++++|++++|+...+++++||++++|++++|+|+||||||||+++|+|++.+    +.+|.|.++|.++..      ..
T Consensus        13 ~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~   92 (269)
T PRK14259         13 IISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEV   92 (269)
T ss_pred             eEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHH
Confidence            78999999999988899999999999999999999999999999999998732    578999999976531      11


Q ss_pred             ccccCCChhh-------HHHHHHHH-----------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHhCCC
Q 029613           74 NKNLGFSAED-------RTENIRRV-----------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        74 ~~~i~~~~~~-------~~~~~~~~-----------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iarall~~  126 (190)
                      +..++|.+++       ..+++...           ..+..++...++        ...+..+|+||+|| .+||+++.+
T Consensus        93 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  172 (269)
T PRK14259         93 RRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIE  172 (269)
T ss_pred             hhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcC
Confidence            2233443332       22222110           111222333332        22367799999999 699999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+++  +|||||++||+..++.+++.+++-
T Consensus       173 p~ll--lLDEPt~gLD~~~~~~l~~~l~~~  200 (269)
T PRK14259        173 PEVI--LMDEPCSALDPISTLKIEETMHEL  200 (269)
T ss_pred             CCEE--EEcCCCccCCHHHHHHHHHHHHHH
Confidence            9999  999999999999999999999864

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.96  E-value=4.8e-29  Score=200.20  Aligned_cols=151  Identities=17%  Similarity=0.078  Sum_probs=114.0

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCcEEEEcCcccccc-----cccccC
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILDGDNLRHG-----LNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g~i~~~g~~~~~~-----~~~~i~   78 (190)
                      |+++|++++|++..+++++||++++|++++|+||||||||||+++|+|++. ++.+|.|.++|.++...     .+..++
T Consensus         1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (243)
T TIGR01978         1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF   80 (243)
T ss_pred             CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence            468999999988889999999999999999999999999999999999742 57899999999765320     111233


Q ss_pred             CChhh--------HHHHHHH-------------------HHHHHHHHHHcCcc-----eeec-ccCccHHHH-HHHHHhC
Q 029613           79 FSAED--------RTENIRR-------------------VGEVAKLFADAGLI-----CIAS-LISPYRKDR-DACRAML  124 (190)
Q Consensus        79 ~~~~~--------~~~~~~~-------------------~~~~~~~~~~~~~~-----~~~~-~lS~g~kqr-~iarall  124 (190)
                      |.+++        ..+++..                   ...+...+...++.     ..+. .+|+||+|| .+||+++
T Consensus        81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~  160 (243)
T TIGR01978        81 LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL  160 (243)
T ss_pred             eeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh
Confidence            33332        1111110                   01223344444443     1244 499999999 6999999


Q ss_pred             CCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      .+|+++  +|||||++||...++.+++.+++-.
T Consensus       161 ~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~~  191 (243)
T TIGR01978       161 LEPKLA--ILDEIDSGLDIDALKIVAEGINRLR  191 (243)
T ss_pred             cCCCEE--EecCCcccCCHHHHHHHHHHHHHHH
Confidence            999999  9999999999999999999998643

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.96  E-value=3e-29  Score=204.57  Aligned_cols=152  Identities=18%  Similarity=0.220  Sum_probs=116.6

Q ss_pred             CcccccCcceeccCc---------cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc
Q 029613            2 ATVGNSTNIFWQESP---------IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG   72 (190)
Q Consensus         2 ~~~l~~~~l~~~~~~---------~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~   72 (190)
                      .+||+++|++++|+.         .++++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++...
T Consensus         2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~   80 (267)
T PRK15112          2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGELLIDDHPLHFG   80 (267)
T ss_pred             cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECCCC
Confidence            358999999999962         46999999999999999999999999999999999987 78899999999765321


Q ss_pred             ----cccccCCChhhH----------HHHHHH-------------HHHHHHHHHHcCcc-e----eecccCccHHHH-HH
Q 029613           73 ----LNKNLGFSAEDR----------TENIRR-------------VGEVAKLFADAGLI-C----IASLISPYRKDR-DA  119 (190)
Q Consensus        73 ----~~~~i~~~~~~~----------~~~~~~-------------~~~~~~~~~~~~~~-~----~~~~lS~g~kqr-~i  119 (190)
                          ....++|.+++.          .+++..             ...+..++...++. .    .+..+|+||+|| .+
T Consensus        81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l  160 (267)
T PRK15112         81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGL  160 (267)
T ss_pred             chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHH
Confidence                112233333221          111110             01233445555552 1    357799999999 69


Q ss_pred             HHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          120 CRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       120 arall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ||+++.+|+++  +|||||++||+..++.+++.+++.
T Consensus       161 aral~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~  195 (267)
T PRK15112        161 ARALILRPKVI--IADEALASLDMSMRSQLINLMLEL  195 (267)
T ss_pred             HHHHHhCCCEE--EEcCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999  999999999999999999988864

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2e-29  Score=222.06  Aligned_cols=153  Identities=18%  Similarity=0.173  Sum_probs=117.7

Q ss_pred             CcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEcCcccccc-----ccc
Q 029613            2 ATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILDGDNLRHG-----LNK   75 (190)
Q Consensus         2 ~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~g~~~~~~-----~~~   75 (190)
                      .+|++++|++++|++..+++++||++.+|++++|+||||||||||+|+|+|++++ +.+|.|.++|.++...     .+.
T Consensus         3 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   82 (506)
T PRK13549          3 EYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA   82 (506)
T ss_pred             CceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence            3589999999999988899999999999999999999999999999999998733 3799999999765321     112


Q ss_pred             ccCCChhh--------HHHHHH--------------H-HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613           76 NLGFSAED--------RTENIR--------------R-VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        76 ~i~~~~~~--------~~~~~~--------------~-~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~  127 (190)
                      .++|.+++        ..+++.              . ...+..++...++..    .+..||+||+|| .+||+++.+|
T Consensus        83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p  162 (506)
T PRK13549         83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA  162 (506)
T ss_pred             CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence            23333322        111111              0 112334455555532    367899999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++  +|||||++||+..+..+.+.+++.
T Consensus       163 ~ll--lLDEPt~~LD~~~~~~l~~~l~~l  189 (506)
T PRK13549        163 RLL--ILDEPTASLTESETAVLLDIIRDL  189 (506)
T ss_pred             CEE--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence            999  999999999999999999888764

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.96  E-value=4.1e-29  Score=219.27  Aligned_cols=152  Identities=18%  Similarity=0.166  Sum_probs=117.3

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN   76 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~   76 (190)
                      |. ||+++|++++|++..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++..    .....
T Consensus         1 m~-~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~-~p~~G~i~~~~~~~~~~~~~~~~~~   78 (490)
T PRK10938          1 MS-SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL-PLLSGERQSQFSHITRLSFEQLQKL   78 (490)
T ss_pred             Cc-eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCceEEECCcccccCCHHHHHHH
Confidence            54 799999999998888999999999999999999999999999999999987 7889999998865421    11122


Q ss_pred             cCCChhh----------------HHHHHH----HHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEE
Q 029613           77 LGFSAED----------------RTENIR----RVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIE  131 (190)
Q Consensus        77 i~~~~~~----------------~~~~~~----~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~  131 (190)
                      +++.+++                ..+++.    .-..+..++...++.    ..+..||+||+|| .+|++++.+|+++ 
T Consensus        79 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll-  157 (490)
T PRK10938         79 VSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLL-  157 (490)
T ss_pred             hceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE-
Confidence            3333221                111110    011233445555553    2377899999999 6999999999999 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHcC
Q 029613          132 VFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                       +|||||++||+..++.+.+.+++-
T Consensus       158 -lLDEPt~~LD~~~~~~l~~~l~~~  181 (490)
T PRK10938        158 -ILDEPFDGLDVASRQQLAELLASL  181 (490)
T ss_pred             -EEcCCcccCCHHHHHHHHHHHHHH
Confidence             999999999999999999888764

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.96  E-value=1.5e-29  Score=195.40  Aligned_cols=138  Identities=20%  Similarity=0.257  Sum_probs=108.1

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccccc
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNL   77 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i   77 (190)
                      +|++++|++++|    +++++||++++|++++|+|+||||||||+++|+|++ ++.+|++.++|.++...     .+..+
T Consensus         3 ~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~i   77 (182)
T cd03215           3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR-PPASGEITLDGKPVTRRSPRDAIRAGI   77 (182)
T ss_pred             cEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCccCHHHHHhCCe
Confidence            478999999998    899999999999999999999999999999999987 78899999999776431     12234


Q ss_pred             CCChhhHH--HHH--HHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHH
Q 029613           78 GFSAEDRT--ENI--RRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKL  152 (190)
Q Consensus        78 ~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~  152 (190)
                      +|.+++..  ...  ..+.+.....         ..+|+||+|| .+||+++.+|+++  +|||||++||+..++.+.+.
T Consensus        78 ~~~~q~~~~~~~~~~~t~~e~l~~~---------~~LS~G~~qrl~la~al~~~p~ll--llDEP~~~LD~~~~~~l~~~  146 (182)
T cd03215          78 AYVPEDRKREGLVLDLSVAENIALS---------SLLSGGNQQKVVLARWLARDPRVL--ILDEPTRGVDVGAKAEIYRL  146 (182)
T ss_pred             EEecCCcccCcccCCCcHHHHHHHH---------hhcCHHHHHHHHHHHHHccCCCEE--EECCCCcCCCHHHHHHHHHH
Confidence            55544311  000  0011100000         0199999999 6999999999999  99999999999999999999


Q ss_pred             HHcC
Q 029613          153 ARAG  156 (190)
Q Consensus       153 ~~~~  156 (190)
                      +++-
T Consensus       147 l~~~  150 (182)
T cd03215         147 IREL  150 (182)
T ss_pred             HHHH
Confidence            8864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=5.7e-29  Score=202.11  Aligned_cols=152  Identities=21%  Similarity=0.189  Sum_probs=116.1

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--h--CCCcEEEEcCccccc------cc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--S--RGKLSYILDGDNLRH------GL   73 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~--~~~g~i~~~g~~~~~------~~   73 (190)
                      +++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++.  +  +.+|.|.++|.++..      ..
T Consensus        13 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~   92 (260)
T PRK10744         13 KIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALL   92 (260)
T ss_pred             eEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHH
Confidence            6899999999988889999999999999999999999999999999999873  1  478999999977531      11


Q ss_pred             ccccCCChhh-------HHHHHHH-------------HHHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHhC
Q 029613           74 NKNLGFSAED-------RTENIRR-------------VGEVAKLFADAGL--------ICIASLISPYRKDR-DACRAML  124 (190)
Q Consensus        74 ~~~i~~~~~~-------~~~~~~~-------------~~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iarall  124 (190)
                      +..++|.+++       ..+++..             ...+..++...++        ...+..+|+||+|| .+||+++
T Consensus        93 ~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~  172 (260)
T PRK10744         93 RAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA  172 (260)
T ss_pred             hcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            2233333332       1222211             0122333444443        12367799999999 6999999


Q ss_pred             CCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      .+|+++  +|||||++||+..++.+++.+++..
T Consensus       173 ~~p~ll--lLDEPt~~LD~~~~~~l~~~L~~~~  203 (260)
T PRK10744        173 IRPEVL--LLDEPCSALDPISTGRIEELITELK  203 (260)
T ss_pred             CCCCEE--EEcCCCccCCHHHHHHHHHHHHHHh
Confidence            999999  9999999999999999999998753

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.96  E-value=5.2e-29  Score=202.23  Aligned_cols=150  Identities=22%  Similarity=0.215  Sum_probs=115.1

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      |++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++..    .....++|
T Consensus         2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (258)
T PRK13548          2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL-SPDSGEVRLNGRPLADWSPAELARRRAV   80 (258)
T ss_pred             eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEEcccCCHHHhhhheEE
Confidence            678999999999888999999999999999999999999999999999977 7889999999976532    01112233


Q ss_pred             Chhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhC------CCCC
Q 029613           80 SAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAML------PDSN  128 (190)
Q Consensus        80 ~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall------~~~~  128 (190)
                      .+++        ..+++..            -..+..++...++..    .+..||+||+|| .+||+++      .+|+
T Consensus        81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~  160 (258)
T PRK13548         81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPR  160 (258)
T ss_pred             EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence            2221        1222211            011233444445532    367899999999 6999999      5899


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++  +|||||++||+..++.+.+.+++.
T Consensus       161 ll--lLDEPt~~LD~~~~~~l~~~l~~~  186 (258)
T PRK13548        161 WL--LLDEPTSALDLAHQHHVLRLARQL  186 (258)
T ss_pred             EE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            99  999999999999999999888764

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=5.9e-29  Score=201.81  Aligned_cols=152  Identities=20%  Similarity=0.183  Sum_probs=116.3

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------c
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------G   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~   72 (190)
                      ++++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++.+    +.+|+|.++|.++..      .
T Consensus        11 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   90 (258)
T PRK14268         11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE   90 (258)
T ss_pred             eeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence            378999999999888899999999999999999999999999999999997732    378999999977531      1


Q ss_pred             cccccCCChhh-------HHHHHHHH------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHhC
Q 029613           73 LNKNLGFSAED-------RTENIRRV------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAML  124 (190)
Q Consensus        73 ~~~~i~~~~~~-------~~~~~~~~------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iarall  124 (190)
                      .+..++|.+++       ..+++...            ..+..++...++        ...+..+|+||+|| .+||+++
T Consensus        91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~  170 (258)
T PRK14268         91 LRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA  170 (258)
T ss_pred             HhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH
Confidence            12233443332       12222210            012233444443        12366799999999 6999999


Q ss_pred             CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+|+++  +|||||++||...+..+++.+++.
T Consensus       171 ~~p~ll--llDEPt~~LD~~~~~~l~~~l~~l  200 (258)
T PRK14268        171 VKPKII--LFDEPTSALDPISTARIEDLIMNL  200 (258)
T ss_pred             cCCCEE--EEeCCCcccCHHHHHHHHHHHHHH
Confidence            999999  999999999999999999999864

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.96  E-value=2.8e-29  Score=195.41  Aligned_cols=142  Identities=15%  Similarity=0.208  Sum_probs=111.8

Q ss_pred             ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCcEEEEcCcccccccccccC
Q 029613            4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILDGDNLRHGLNKNLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g~i~~~g~~~~~~~~~~i~   78 (190)
                      +++++|+++.|++    +++++++||++++|++++|+|+||||||||+++|+|+.. ++.+|++.++|.++.......++
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~   82 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG   82 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence            5789999999974    679999999999999999999999999999999999753 47899999999876422223344


Q ss_pred             CChhhH--------HHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHH
Q 029613           79 FSAEDR--------TENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGL  149 (190)
Q Consensus        79 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~  149 (190)
                      |.+++.        .+++..    ...+         ..+|+||+|| .+||+++.+|+++  +|||||++||...++.+
T Consensus        83 ~~~q~~~~~~~~tv~~~l~~----~~~~---------~~LSgGe~qrv~la~al~~~p~vl--llDEP~~~LD~~~~~~l  147 (192)
T cd03232          83 YVEQQDVHSPNLTVREALRF----SALL---------RGLSVEQRKRLTIGVELAAKPSIL--FLDEPTSGLDSQAAYNI  147 (192)
T ss_pred             EecccCccccCCcHHHHHHH----HHHH---------hcCCHHHhHHHHHHHHHhcCCcEE--EEeCCCcCCCHHHHHHH
Confidence            444431        122111    0000         1799999999 6999999999999  99999999999999999


Q ss_pred             HHHHHcCCCCC
Q 029613          150 YKLARAGKIKG  160 (190)
Q Consensus       150 ~~~~~~~~~~~  160 (190)
                      .+.+++-...|
T Consensus       148 ~~~l~~~~~~~  158 (192)
T cd03232         148 VRFLKKLADSG  158 (192)
T ss_pred             HHHHHHHHHcC
Confidence            99988643334

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.96  E-value=5.6e-29  Score=198.14  Aligned_cols=152  Identities=16%  Similarity=0.064  Sum_probs=114.2

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChh-h
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE-D   83 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~-~   83 (190)
                      +.++++++.|+.+++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++... .....+.+. .
T Consensus        23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~-~~~~~~~~~~t  100 (224)
T cd03220          23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY-PPDSGTVTVRGRVSSLL-GLGGGFNPELT  100 (224)
T ss_pred             hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEchhh-cccccCCCCCc
Confidence            67889999999999999999999999999999999999999999999977 78899999999765311 111111111 1


Q ss_pred             HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcCh
Q 029613           84 RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDP  146 (190)
Q Consensus        84 ~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~  146 (190)
                      ..+++..            ...+..++...++.    ..+..+|+||+|| .+||+++.+|+++  +|||||++||...+
T Consensus       101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll--llDEP~~gLD~~~~  178 (224)
T cd03220         101 GRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDIL--LIDEVLAVGDAAFQ  178 (224)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCcccCCHHHH
Confidence            1111110            01122333344443    2367899999999 6999999999999  99999999999999


Q ss_pred             HHHHHHHHcCCCCC
Q 029613          147 KGLYKLARAGKIKG  160 (190)
Q Consensus       147 ~~~~~~~~~~~~~~  160 (190)
                      +.+++.+++-...|
T Consensus       179 ~~~~~~l~~~~~~~  192 (224)
T cd03220         179 EKCQRRLRELLKQG  192 (224)
T ss_pred             HHHHHHHHHHHhCC
Confidence            99999888643333

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=8.5e-29  Score=201.91  Aligned_cols=152  Identities=18%  Similarity=0.185  Sum_probs=115.4

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--h--CCCcEEEEcCccccc------c
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--S--RGKLSYILDGDNLRH------G   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~--~~~g~i~~~g~~~~~------~   72 (190)
                      +|++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++.  +  +.+|.|.++|.++..      .
T Consensus        20 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   99 (268)
T PRK14248         20 HILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN   99 (268)
T ss_pred             ceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHH
Confidence            37899999999998889999999999999999999999999999999999752  1  578999999977632      1


Q ss_pred             cccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHh
Q 029613           73 LNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAM  123 (190)
Q Consensus        73 ~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iaral  123 (190)
                      ....++|.+++       ..+++...             ..+...+...++        ...+..+|+||+|| .+||++
T Consensus       100 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral  179 (268)
T PRK14248        100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTL  179 (268)
T ss_pred             HhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHH
Confidence            12233343322       22222110             011222333333        12367799999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||...++.+++.+++-
T Consensus       180 ~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~  210 (268)
T PRK14248        180 AMKPAVL--LLDEPASALDPISNAKIEELITEL  210 (268)
T ss_pred             hCCCCEE--EEcCCCcccCHHHHHHHHHHHHHH
Confidence            9999999  999999999999999999998864

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.6e-29  Score=207.21  Aligned_cols=150  Identities=16%  Similarity=0.094  Sum_probs=116.7

Q ss_pred             ccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------
Q 029613            4 VGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------   71 (190)
Q Consensus         4 ~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------   71 (190)
                      .++++|++++|++     .++|+++||++++|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++..       
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~   80 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL-QPTSGTVTIGERVITAGKKNKKL   80 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECccccccchH
Confidence            3789999999964     56999999999999999999999999999999999977 7889999999987631       


Q ss_pred             -ccccccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcc-e----eecccCccHHHH-HHHHHh
Q 029613           72 -GLNKNLGFSAED---------RTENIRR------------VGEVAKLFADAGLI-C----IASLISPYRKDR-DACRAM  123 (190)
Q Consensus        72 -~~~~~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-~----~~~~lS~g~kqr-~iaral  123 (190)
                       ..+..++|.+++         ..+++..            ...+..++...++. .    .+..||+||+|| .+||++
T Consensus        81 ~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL  160 (290)
T PRK13634         81 KPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL  160 (290)
T ss_pred             HHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence             112234444432         1122211            01223345555653 2    367899999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||+..+..+++.+++-
T Consensus       161 ~~~P~ll--llDEPt~~LD~~~~~~l~~~L~~l  191 (290)
T PRK13634        161 AMEPEVL--VLDEPTAGLDPKGRKEMMEMFYKL  191 (290)
T ss_pred             HcCCCEE--EEECCcccCCHHHHHHHHHHHHHH
Confidence            9999999  999999999999999999888764

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=8e-29  Score=202.04  Aligned_cols=152  Identities=19%  Similarity=0.161  Sum_probs=116.9

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------c
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------G   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~   72 (190)
                      ++++++|++++|+++++++++||++.+|++++|+|+||||||||+++|+|++.+    +.+|+|.++|.++..      .
T Consensus        19 ~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   98 (267)
T PRK14237         19 IALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYE   98 (267)
T ss_pred             eEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHH
Confidence            378999999999888999999999999999999999999999999999998742    478999999977631      1


Q ss_pred             cccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHh
Q 029613           73 LNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAM  123 (190)
Q Consensus        73 ~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iaral  123 (190)
                      .+..++|.+++       ..+++...             ..+...+...++        ...+..+|+|++|| .+||++
T Consensus        99 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral  178 (267)
T PRK14237         99 MRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAI  178 (267)
T ss_pred             HhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence            12234443332       22222210             111222334333        12367899999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||+..++.+++.+++.
T Consensus       179 ~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~  209 (267)
T PRK14237        179 AVKPDIL--LMDEPASALDPISTMQLEETMFEL  209 (267)
T ss_pred             hcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999  999999999999999999999875

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.96  E-value=6.2e-29  Score=200.94  Aligned_cols=151  Identities=18%  Similarity=0.133  Sum_probs=115.6

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-----cccc-----
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-----LRHG-----   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-----~~~~-----   72 (190)
                      +|++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.+     +...     
T Consensus         2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (253)
T TIGR02323         2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL-APDHGTATYIMRSGAELELYQLSEAER   80 (253)
T ss_pred             ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEEecccccccccccCCHHHH
Confidence            4789999999998888999999999999999999999999999999999977 7889999999865     3210     


Q ss_pred             ---cccccCCChhhH----------HHHHH-------------HHHHHHHHHHHcCcc-----eeecccCccHHHH-HHH
Q 029613           73 ---LNKNLGFSAEDR----------TENIR-------------RVGEVAKLFADAGLI-----CIASLISPYRKDR-DAC  120 (190)
Q Consensus        73 ---~~~~i~~~~~~~----------~~~~~-------------~~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~ia  120 (190)
                         ....++|.+++.          .+++.             ....+..++...++.     ..+..+|+||+|| .+|
T Consensus        81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la  160 (253)
T TIGR02323        81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA  160 (253)
T ss_pred             HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence               011233322221          01110             011233344555542     2367799999999 699


Q ss_pred             HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+++.+|+++  +|||||++||+..++.+++.+++.
T Consensus       161 ral~~~p~vl--llDEP~~~LD~~~~~~l~~~l~~~  194 (253)
T TIGR02323       161 RNLVTRPRLV--FMDEPTGGLDVSVQARLLDLLRGL  194 (253)
T ss_pred             HHHhcCCCEE--EEcCCCccCCHHHHHHHHHHHHHH
Confidence            9999999999  999999999999999999888763

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=6.3e-29  Score=208.35  Aligned_cols=152  Identities=14%  Similarity=0.138  Sum_probs=116.8

Q ss_pred             cccccCcceecc----CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh---CCCcEEEEcCcccccc---
Q 029613            3 TVGNSTNIFWQE----SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS---RGKLSYILDGDNLRHG---   72 (190)
Q Consensus         3 ~~l~~~~l~~~~----~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~---~~~g~i~~~g~~~~~~---   72 (190)
                      ++|+++|++++|    +...+++++||++.+||+++|+|+||||||||+++|+|++.+   +.+|.|.++|.++...   
T Consensus         2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~   81 (330)
T PRK15093          2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR   81 (330)
T ss_pred             CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence            378999999999    346799999999999999999999999999999999998742   4789999999875320   


Q ss_pred             -c----ccccCCChhhH----------HHHHH------------------HHHHHHHHHHHcCcc-------eeecccCc
Q 029613           73 -L----NKNLGFSAEDR----------TENIR------------------RVGEVAKLFADAGLI-------CIASLISP  112 (190)
Q Consensus        73 -~----~~~i~~~~~~~----------~~~~~------------------~~~~~~~~~~~~~~~-------~~~~~lS~  112 (190)
                       .    ...++|.+++.          .+++.                  .-..+..++...++.       ..+..||+
T Consensus        82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg  161 (330)
T PRK15093         82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE  161 (330)
T ss_pred             HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence             0    11344433321          11111                  011234455666663       34778999


Q ss_pred             cHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          113 YRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       113 g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ||+|| .||||++.+|+++  ++||||++||...+..+.+.+++.
T Consensus       162 G~~QRv~iArAL~~~P~ll--ilDEPts~LD~~~~~~i~~lL~~l  204 (330)
T PRK15093        162 GECQKVMIAIALANQPRLL--IADEPTNAMEPTTQAQIFRLLTRL  204 (330)
T ss_pred             HHHHHHHHHHHHHCCCCEE--EEeCCCCcCCHHHHHHHHHHHHHH
Confidence            99999 5999999999999  999999999999999999888863

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.6e-29  Score=207.04  Aligned_cols=155  Identities=16%  Similarity=0.119  Sum_probs=117.5

Q ss_pred             ccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------
Q 029613            4 VGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------   71 (190)
Q Consensus         4 ~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------   71 (190)
                      |++++|++++|+.     ..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++..       
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~   79 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL-QPTEGKVTVGDIVVSSTSKQKEI   79 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC-CCCCcEEEECCEECccccccccH
Confidence            5789999999963     25999999999999999999999999999999999987 7889999999987531       


Q ss_pred             -ccccccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHh
Q 029613           72 -GLNKNLGFSAED---------RTENIRR------------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAM  123 (190)
Q Consensus        72 -~~~~~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iaral  123 (190)
                       ..+..++|..++         ..+++..            -..+..++...++.     ..+..||+||+|| ++||++
T Consensus        80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL  159 (288)
T PRK13643         80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL  159 (288)
T ss_pred             HHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence             112234443332         1122211            01233444445552     2367799999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCc
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGL  161 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~  161 (190)
                      +.+|+++  +|||||++||+..++.+++.+++-+..|.
T Consensus       160 ~~~p~il--lLDEPt~gLD~~~~~~l~~~l~~l~~~g~  195 (288)
T PRK13643        160 AMEPEVL--VLDEPTAGLDPKARIEMMQLFESIHQSGQ  195 (288)
T ss_pred             HhCCCEE--EEECCccCCCHHHHHHHHHHHHHHHHCCC
Confidence            9999999  99999999999999999988876433343

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=8.2e-29  Score=199.61  Aligned_cols=152  Identities=19%  Similarity=0.214  Sum_probs=117.2

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--hCCCcEEEEcCccccc----cccccc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--SRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      +++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++.  ++.+|.|.++|.++..    ..+..+
T Consensus         2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i   81 (246)
T PRK14269          2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV   81 (246)
T ss_pred             ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence            5889999999998889999999999999999999999999999999999763  3678999999987632    112223


Q ss_pred             CCChhh-------HHHHHHHH--------------HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHhCCCC
Q 029613           78 GFSAED-------RTENIRRV--------------GEVAKLFADAGLI--------CIASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        78 ~~~~~~-------~~~~~~~~--------------~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iarall~~~  127 (190)
                      +|.+++       ..+++...              ..+..++...++.        ..+..+|+||+|| .+||+++.+|
T Consensus        82 ~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p  161 (246)
T PRK14269         82 GMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKP  161 (246)
T ss_pred             EEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            333332       22222110              1123344555552        2356799999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      +++  +|||||++||...+..+.+.+++..
T Consensus       162 ~ll--lLDEP~~~LD~~~~~~l~~~l~~~~  189 (246)
T PRK14269        162 KLL--LLDEPTSALDPISSGVIEELLKELS  189 (246)
T ss_pred             CEE--EEcCCcccCCHHHHHHHHHHHHHHh
Confidence            999  9999999999999999999998753

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3.2e-29  Score=209.82  Aligned_cols=151  Identities=17%  Similarity=0.203  Sum_probs=117.5

Q ss_pred             cccccCcceeccC----------ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-
Q 029613            3 TVGNSTNIFWQES----------PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-   71 (190)
Q Consensus         3 ~~l~~~~l~~~~~----------~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-   71 (190)
                      ++|+++|++++|+          .+.+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. 
T Consensus         4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~-~p~~G~i~~~g~~l~~~   82 (327)
T PRK11308          4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE-TPTGGELYYQGQDLLKA   82 (327)
T ss_pred             ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCC-CCCCcEEEECCEEcCcC
Confidence            4789999999995          257999999999999999999999999999999999987 6789999999987632 


Q ss_pred             ------ccccccCCChhhH----------HHHHH-------------HHHHHHHHHHHcCcc-----eeecccCccHHHH
Q 029613           72 ------GLNKNLGFSAEDR----------TENIR-------------RVGEVAKLFADAGLI-----CIASLISPYRKDR  117 (190)
Q Consensus        72 ------~~~~~i~~~~~~~----------~~~~~-------------~~~~~~~~~~~~~~~-----~~~~~lS~g~kqr  117 (190)
                            ..+..++|.+++.          .+++.             ....+..++...++.     .++..||+||+||
T Consensus        83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR  162 (327)
T PRK11308         83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR  162 (327)
T ss_pred             CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence                  1122344444331          11111             012234455555552     3478899999999


Q ss_pred             -HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          118 -DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       118 -~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                       .||||++.+|+++  ++||||++||...+..+++.+++.
T Consensus       163 v~iArAL~~~P~lL--ilDEPts~LD~~~~~~i~~lL~~l  200 (327)
T PRK11308        163 IAIARALMLDPDVV--VADEPVSALDVSVQAQVLNLMMDL  200 (327)
T ss_pred             HHHHHHHHcCCCEE--EEECCCccCCHHHHHHHHHHHHHH
Confidence             6999999999999  999999999999999999888763

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.96  E-value=3.4e-29  Score=221.57  Aligned_cols=148  Identities=25%  Similarity=0.227  Sum_probs=114.8

Q ss_pred             cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCC
Q 029613            5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFS   80 (190)
Q Consensus         5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~   80 (190)
                      ++++|++++|++ .++|+|+||++++|+.++|+||||||||||+++|+|++ ++.+|.|.++|.++..   .++..++|.
T Consensus       335 I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-~p~~G~I~i~g~~i~~~~~~lr~~i~~V  413 (529)
T TIGR02868       335 LELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL-DPLQGEVTLDGVSVSSLQDELRRRISVF  413 (529)
T ss_pred             EEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence            678999999975 56999999999999999999999999999999999977 8899999999977642   233345565


Q ss_pred             hhh-------HHHHHHHH------HHHHHHHHHcCc-----------c----eeecccCccHHHH-HHHHHhCCCCCeEE
Q 029613           81 AED-------RTENIRRV------GEVAKLFADAGL-----------I----CIASLISPYRKDR-DACRAMLPDSNFIE  131 (190)
Q Consensus        81 ~~~-------~~~~~~~~------~~~~~~~~~~~~-----------~----~~~~~lS~g~kqr-~iarall~~~~il~  131 (190)
                      +|+       .++|+...      .++.+.+...++           .    +....+||||||| ++|||++++|+++ 
T Consensus       414 ~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~il-  492 (529)
T TIGR02868       414 AQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPIL-  492 (529)
T ss_pred             ccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEE-
Confidence            554       23333211      111112222111           1    1245699999999 7999999999999 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHc
Q 029613          132 VFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                       +||||||+||.+..+.+++.+++
T Consensus       493 -iLDE~TSaLD~~te~~I~~~l~~  515 (529)
T TIGR02868       493 -LLDEPTEHLDAGTESELLEDLLA  515 (529)
T ss_pred             -EEeCCcccCCHHHHHHHHHHHHH
Confidence             99999999999999999998885

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3.1e-29  Score=209.31  Aligned_cols=151  Identities=15%  Similarity=0.119  Sum_probs=115.8

Q ss_pred             cccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc------
Q 029613            3 TVGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------   71 (190)
Q Consensus         3 ~~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------   71 (190)
                      ++|+++|++++|+.     .++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..      
T Consensus        20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~-~p~~G~I~i~g~~~~~~~~~~~   98 (320)
T PRK13631         20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI-KSKYGTIQVGDIYIGDKKNNHE   98 (320)
T ss_pred             ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCEEccccccccc
Confidence            47899999999964     35999999999999999999999999999999999987 7889999999865422      


Q ss_pred             --------------ccccccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcc-----eeecccC
Q 029613           72 --------------GLNKNLGFSAED---------RTENIRR------------VGEVAKLFADAGLI-----CIASLIS  111 (190)
Q Consensus        72 --------------~~~~~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-----~~~~~lS  111 (190)
                                    ..+..++|..++         ..+++..            ...+..++...++.     ..+..||
T Consensus        99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS  178 (320)
T PRK13631         99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS  178 (320)
T ss_pred             ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence                          112233443332         1122210            01223344445553     2367899


Q ss_pred             ccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          112 PYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       112 ~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +||+|| .+||+++.+|+++  +|||||++||+..+..+++.+++-
T Consensus       179 gGqkqRvaiAraL~~~p~iL--LLDEPtsgLD~~~~~~l~~~L~~l  222 (320)
T PRK13631        179 GGQKRRVAIAGILAIQPEIL--IFDEPTAGLDPKGEHEMMQLILDA  222 (320)
T ss_pred             HHHHHHHHHHHHHHcCCCEE--EEECCccCCCHHHHHHHHHHHHHH
Confidence            999999 6999999999999  999999999999999999988764

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.8e-29  Score=203.84  Aligned_cols=150  Identities=17%  Similarity=0.175  Sum_probs=114.2

Q ss_pred             ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccc-cccCCCh
Q 029613            4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLN-KNLGFSA   81 (190)
Q Consensus         4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~-~~i~~~~   81 (190)
                      +++++|++++|+ ++.+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++..... ..++|.+
T Consensus         6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~i~~v~   84 (272)
T PRK15056          6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV-RLASGKISILGQPTRQALQKNLVAYVP   84 (272)
T ss_pred             eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEhHHhhccceEEEec
Confidence            588999999995 578999999999999999999999999999999999977 7889999999976532111 1122222


Q ss_pred             hh----------HHHHH---------------HH-HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeE
Q 029613           82 ED----------RTENI---------------RR-VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        82 ~~----------~~~~~---------------~~-~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      ++          ..+++               .. -..+...+...++.    ..+..+|+||+|| .+||+++.+|+++
T Consensus        85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll  164 (272)
T PRK15056         85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVI  164 (272)
T ss_pred             cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            21          01110               00 01122334444443    2367899999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +|||||++||+..++.+++.+++-
T Consensus       165 --llDEPt~~LD~~~~~~l~~~L~~~  188 (272)
T PRK15056        165 --LLDEPFTGVDVKTEARIISLLREL  188 (272)
T ss_pred             --EEeCCCccCCHHHHHHHHHHHHHH
Confidence              999999999999999999998764

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3.4e-29  Score=205.46  Aligned_cols=150  Identities=17%  Similarity=0.104  Sum_probs=115.1

Q ss_pred             ccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------
Q 029613            4 VGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------   71 (190)
Q Consensus         4 ~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------   71 (190)
                      +++++|++++|++     .++++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..       
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~   80 (280)
T PRK13649          2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH-VPTQGSVRVDDTLITSTSKNKDI   80 (280)
T ss_pred             eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccCH
Confidence            4789999999974     36999999999999999999999999999999999977 7889999999976532       


Q ss_pred             -ccccccCCChhh---------HHHHHHHH------------HHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHh
Q 029613           72 -GLNKNLGFSAED---------RTENIRRV------------GEVAKLFADAGLI-----CIASLISPYRKDR-DACRAM  123 (190)
Q Consensus        72 -~~~~~i~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iaral  123 (190)
                       ..+..++|.+++         ..+++...            ..+..++...++.     ..+..+|+||+|| .+||++
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al  160 (280)
T PRK13649         81 KQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL  160 (280)
T ss_pred             HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence             112233443332         11222110            0122334444553     1367799999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||+..++.+++.+++.
T Consensus       161 ~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~  191 (280)
T PRK13649        161 AMEPKIL--VLDEPTAGLDPKGRKELMTLFKKL  191 (280)
T ss_pred             HcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999  999999999999999999998864

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.1e-28  Score=199.21  Aligned_cols=152  Identities=21%  Similarity=0.197  Sum_probs=116.3

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH--hhC--CCcEEEEcCccccc------c
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL--YSR--GKLSYILDGDNLRH------G   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l--~~~--~~g~i~~~g~~~~~------~   72 (190)
                      +|++++|+++.|+.+.+++++||++++|++++|+|+||||||||+++|+|+.  .++  .+|+|.++|.++..      .
T Consensus         2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   81 (250)
T PRK14245          2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE   81 (250)
T ss_pred             cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence            5789999999999888999999999999999999999999999999999963  133  48999999977632      1


Q ss_pred             cccccCCChhh-------HHHHHHH------------H-HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHh
Q 029613           73 LNKNLGFSAED-------RTENIRR------------V-GEVAKLFADAGLI--------CIASLISPYRKDR-DACRAM  123 (190)
Q Consensus        73 ~~~~i~~~~~~-------~~~~~~~------------~-~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iaral  123 (190)
                      .+..++|.+++       ..+++..            . ..+...+...++.        ..+..+|+||+|| .+||++
T Consensus        82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  161 (250)
T PRK14245         82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM  161 (250)
T ss_pred             HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHH
Confidence            12233443332       1222211            0 1122334444432        2366799999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||+..++.+++.+++.
T Consensus       162 ~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~  192 (250)
T PRK14245        162 AVSPSVL--LMDEPASALDPISTAKVEELIHEL  192 (250)
T ss_pred             hcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence            9999999  999999999999999999999875

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.9e-29  Score=204.12  Aligned_cols=150  Identities=17%  Similarity=0.227  Sum_probs=116.6

Q ss_pred             ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc------ccccc
Q 029613            4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------GLNKN   76 (190)
Q Consensus         4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------~~~~~   76 (190)
                      |++++|++++|+ ...+++++||++++||+++|+|+||||||||+++|+|++ ++.+|+|.++|.++..      .....
T Consensus         1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (275)
T PRK13639          1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL-KPTSGEVLIKGEPIKYDKKSLLEVRKT   79 (275)
T ss_pred             CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEECccccchHHHHHhh
Confidence            478999999996 467999999999999999999999999999999999977 7889999999987631      11223


Q ss_pred             cCCChhhH---------HHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613           77 LGFSAEDR---------TENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        77 i~~~~~~~---------~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      ++|.+++.         .+++..            ...+..++...++..    .+..||+||+|| .+||+++.+|+++
T Consensus        80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll  159 (275)
T PRK13639         80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEII  159 (275)
T ss_pred             eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            44444331         122211            012333445555532    367899999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +|||||++||+..+..+.+.+++-
T Consensus       160 --llDEPt~gLD~~~~~~l~~~l~~l  183 (275)
T PRK13639        160 --VLDEPTSGLDPMGASQIMKLLYDL  183 (275)
T ss_pred             --EEeCCCcCCCHHHHHHHHHHHHHH
Confidence              999999999999999999988864

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.96  E-value=4.2e-29  Score=215.72  Aligned_cols=157  Identities=20%  Similarity=0.273  Sum_probs=122.7

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----------
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----------   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----------   72 (190)
                      ++++++|++|+|+++++|+++||++.+||+++|+|.||||||||+|+|+|.+ +|++|+|+++|+.+...          
T Consensus         7 ~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~-~p~~G~I~~~G~~~~~~sp~~A~~~GI   85 (500)
T COG1129           7 PLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY-PPDSGEILIDGKPVAFSSPRDALAAGI   85 (500)
T ss_pred             ceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc-cCCCceEEECCEEccCCCHHHHHhCCc
Confidence            3789999999999999999999999999999999999999999999999977 89999999999865310          


Q ss_pred             --cccccCCChh-hHHHHH---------------HH-HHHHHHHHHHcCc----ceeecccCccHHHH-HHHHHhCCCCC
Q 029613           73 --LNKNLGFSAE-DRTENI---------------RR-VGEVAKLFADAGL----ICIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        73 --~~~~i~~~~~-~~~~~~---------------~~-~~~~~~~~~~~~~----~~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                        ..+++.+.+. ...+|+               +. ......++...+.    ...+..||.+++|. +||||+..+++
T Consensus        86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~ar  165 (500)
T COG1129          86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDAR  165 (500)
T ss_pred             EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCC
Confidence              0111111111 011111               11 1233344555554    23477899999999 79999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                      ++  +|||||++|..+..+.+++.+++.+.+|..
T Consensus       166 ll--IlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~  197 (500)
T COG1129         166 VL--ILDEPTAALTVKETERLFDLIRRLKAQGVA  197 (500)
T ss_pred             EE--EEcCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence            99  999999999999999999999998877754

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.96  E-value=2.3e-29  Score=197.39  Aligned_cols=144  Identities=15%  Similarity=0.100  Sum_probs=112.8

Q ss_pred             ccccCcceeccC----ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh--CCCcEEEEcCccccc---ccc
Q 029613            4 VGNSTNIFWQES----PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS--RGKLSYILDGDNLRH---GLN   74 (190)
Q Consensus         4 ~l~~~~l~~~~~----~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~--~~~g~i~~~g~~~~~---~~~   74 (190)
                      .+.++|++|.|.    +..+++++||++++|++++|+|+||||||||+++|+|++.+  +.+|.|.++|.++..   ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~   82 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP   82 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence            467899999995    45799999999999999999999999999999999998732  789999999987642   122


Q ss_pred             cccCCChhh--------HHHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613           75 KNLGFSAED--------RTENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARD  145 (190)
Q Consensus        75 ~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~  145 (190)
                      ..++|.+++        ..+++...       ........+..+|+||+|| .+||+++.+|+++  +|||||++||+..
T Consensus        83 ~~i~~~~q~~~~~~~~tv~~~l~~~-------~~~~~~~~~~~LS~Ge~qrl~laral~~~p~ll--llDEPt~~LD~~~  153 (202)
T cd03233          83 GEIIYVSEEDVHFPTLTVRETLDFA-------LRCKGNEFVRGISGGERKRVSIAEALVSRASVL--CWDNSTRGLDSST  153 (202)
T ss_pred             ceEEEEecccccCCCCcHHHHHhhh-------hhhccccchhhCCHHHHHHHHHHHHHhhCCCEE--EEcCCCccCCHHH
Confidence            234454443        12222110       0111334467899999999 6999999999999  9999999999999


Q ss_pred             hHHHHHHHHcC
Q 029613          146 PKGLYKLARAG  156 (190)
Q Consensus       146 ~~~~~~~~~~~  156 (190)
                      ++.+++.+++-
T Consensus       154 ~~~~~~~l~~~  164 (202)
T cd03233         154 ALEILKCIRTM  164 (202)
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.2e-28  Score=199.99  Aligned_cols=152  Identities=21%  Similarity=0.180  Sum_probs=115.9

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-C---CCcEEEEcCccccc------c
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-R---GKLSYILDGDNLRH------G   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~---~~g~i~~~g~~~~~------~   72 (190)
                      +|++++|+++.|+...+++++||++.+|++++|+|+||||||||+++|+|++.+ +   .+|.|.++|.++..      .
T Consensus        11 ~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~   90 (259)
T PRK14274         11 EVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE   90 (259)
T ss_pred             ceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence            478999999999888899999999999999999999999999999999998732 3   48999999987631      1


Q ss_pred             cccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHh
Q 029613           73 LNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGLI--------CIASLISPYRKDR-DACRAM  123 (190)
Q Consensus        73 ~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iaral  123 (190)
                      .+..++|.+++       ..+++...             ..+..++...++.        ..+..+|+||+|| .+||++
T Consensus        91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral  170 (259)
T PRK14274         91 LRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARAL  170 (259)
T ss_pred             HhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence            12233443332       22222110             1122233344431        2366799999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||...+..+.+.+++-
T Consensus       171 ~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~  201 (259)
T PRK14274        171 ATNPDVL--LMDEPTSALDPVSTRKIEELILKL  201 (259)
T ss_pred             hcCCCEE--EEcCCcccCCHHHHHHHHHHHHHH
Confidence            9999999  999999999999999999999874

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.96  E-value=3.7e-29  Score=225.96  Aligned_cols=148  Identities=23%  Similarity=0.257  Sum_probs=117.9

Q ss_pred             cccCcceeccCcc--ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESPI--GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~~--~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      ++++|++++|+..  .+++|+|+++++||.++|+|+||||||||+|+|.|++ .|..|.|.+||.++..    .++..++
T Consensus       472 I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly-~p~~G~I~~dg~dl~~i~~~~lR~~ig  550 (709)
T COG2274         472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY-KPQQGRILLDGVDLNDIDLASLRRQVG  550 (709)
T ss_pred             EEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEeHHhcCHHHHHhhee
Confidence            7899999999765  6999999999999999999999999999999999977 8899999999998754    4566677


Q ss_pred             CChhh-------HHHHHH------------HHHHHH---HHHHH--cCc----ceeecccCccHHHH-HHHHHhCCCCCe
Q 029613           79 FSAED-------RTENIR------------RVGEVA---KLFAD--AGL----ICIASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        79 ~~~~~-------~~~~~~------------~~~~~~---~~~~~--~~~----~~~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      +.+++       ..+++.            ...+.+   +....  .|.    .+....|||||||| ++||+++.+|++
T Consensus       551 ~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~I  630 (709)
T COG2274         551 YVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI  630 (709)
T ss_pred             EEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCE
Confidence            77765       223221            111111   11111  111    12356799999999 799999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +  +||||||+||....+.+++.+.+
T Consensus       631 L--lLDEaTSaLD~~sE~~I~~~L~~  654 (709)
T COG2274         631 L--LLDEATSALDPETEAIILQNLLQ  654 (709)
T ss_pred             E--EEeCcccccCHhHHHHHHHHHHH
Confidence            9  99999999999999999988876

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.96  E-value=6.5e-29  Score=201.26  Aligned_cols=150  Identities=18%  Similarity=0.218  Sum_probs=115.4

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCCC
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGFS   80 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~~   80 (190)
                      ++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..    .....++|.
T Consensus         2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (256)
T TIGR03873         2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL-RPDAGTVDLAGVDLHGLSRRARARRVALV   80 (256)
T ss_pred             ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence            57899999999889999999999999999999999999999999999977 7889999999976532    111123333


Q ss_pred             hhh--------HHHHHHH----------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEE
Q 029613           81 AED--------RTENIRR----------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIE  131 (190)
Q Consensus        81 ~~~--------~~~~~~~----------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~  131 (190)
                      +++        ..+++..                ...+...+...++..    .+..+|+||+|| .+||+++.+|+++ 
T Consensus        81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll-  159 (256)
T TIGR03873        81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLL-  159 (256)
T ss_pred             cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE-
Confidence            222        1122211                012233344444432    367799999999 6999999999999 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          132 VFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                       +|||||++||...++.+.+.+++..
T Consensus       160 -llDEPt~~LD~~~~~~l~~~l~~~~  184 (256)
T TIGR03873       160 -LLDEPTNHLDVRAQLETLALVRELA  184 (256)
T ss_pred             -EEcCccccCCHHHHHHHHHHHHHHH
Confidence             9999999999999999999988653

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.96  E-value=8.3e-29  Score=201.71  Aligned_cols=150  Identities=19%  Similarity=0.176  Sum_probs=115.3

Q ss_pred             ccccCcceeccC---------ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--
Q 029613            4 VGNSTNIFWQES---------PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--   72 (190)
Q Consensus         4 ~l~~~~l~~~~~---------~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--   72 (190)
                      |++++|+++.|+         .+.+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++...  
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~   80 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE-KPAQGTVSFRGQDLYQLDR   80 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEccccCH
Confidence            688999999995         367999999999999999999999999999999999977 78899999999765321  


Q ss_pred             -----cccccCCChhhH----------HHHHHH-------------HHHHHHHHHHcCcc-----eeecccCccHHHH-H
Q 029613           73 -----LNKNLGFSAEDR----------TENIRR-------------VGEVAKLFADAGLI-----CIASLISPYRKDR-D  118 (190)
Q Consensus        73 -----~~~~i~~~~~~~----------~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~  118 (190)
                           .+..++|.+++.          .+++..             -..+..++...++.     ..+..+|+||+|| .
T Consensus        81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~  160 (265)
T TIGR02769        81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN  160 (265)
T ss_pred             HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence                 122233333321          111100             01223345555552     2367799999999 6


Q ss_pred             HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          119 ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       119 iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +||+++.+|+++  +|||||++||+..++.+++.+++.
T Consensus       161 laral~~~p~il--lLDEPt~~LD~~~~~~l~~~l~~~  196 (265)
T TIGR02769       161 IARALAVKPKLI--VLDEAVSNLDMVLQAVILELLRKL  196 (265)
T ss_pred             HHHHHhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999  999999999999999999888764

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.95  E-value=2.3e-28  Score=185.32  Aligned_cols=144  Identities=17%  Similarity=0.226  Sum_probs=109.3

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccCCCh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLGFSA   81 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~~~~   81 (190)
                      |+.++++.|+|+..+.  .+++.+..||+++|+||||||||||+++|+|.. .|.+|.|+++|.+....  ...-+++..
T Consensus         1 ~l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~-~P~~G~i~i~g~d~t~~~P~~RPVSmlF   77 (231)
T COG3840           1 MLALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE-TPASGEILINGVDHTASPPAERPVSMLF   77 (231)
T ss_pred             CccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhcc-CCCCceEEEcCeecCcCCcccCChhhhh
Confidence            4788999999985543  678899999999999999999999999999977 88999999999876431  111112222


Q ss_pred             hh-----------------------HHHHHHHHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613           82 ED-----------------------RTENIRRVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVF  133 (190)
Q Consensus        82 ~~-----------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vl  133 (190)
                      ++                       ..+...++..   .....|+.    ..+..|||||||| ++||+++++.+++  +
T Consensus        78 QEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~---aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pil--L  152 (231)
T COG3840          78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEA---AAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPIL--L  152 (231)
T ss_pred             hccccchhhhhhhhhcccCCcccccCHHHHHHHHH---HHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeE--E
Confidence            21                       1222233333   33344443    4588999999999 6999999999999  9


Q ss_pred             eeCCchhhhhcChHHHHHHHHc
Q 029613          134 MNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       134 lDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      |||||++||+..+....+.+.+
T Consensus       153 LDEPFsALdP~LR~eMl~Lv~~  174 (231)
T COG3840         153 LDEPFSALDPALRAEMLALVSQ  174 (231)
T ss_pred             ecCchhhcCHHHHHHHHHHHHH
Confidence            9999999999999877766654

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=9.7e-29  Score=203.38  Aligned_cols=152  Identities=20%  Similarity=0.193  Sum_probs=116.5

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------c
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------G   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~   72 (190)
                      ++++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++.+    +.+|.|.++|.++..      .
T Consensus        38 ~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~  117 (285)
T PRK14254         38 TVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVA  117 (285)
T ss_pred             ceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHh
Confidence            368999999999888899999999999999999999999999999999998742    578999999976531      1


Q ss_pred             cccccCCChhh-------HHHHHHHH-----------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHhCC
Q 029613           73 LNKNLGFSAED-------RTENIRRV-----------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAMLP  125 (190)
Q Consensus        73 ~~~~i~~~~~~-------~~~~~~~~-----------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iarall~  125 (190)
                      .+..++|.+++       ..+++...           ..+..++...++        ...+..||+||+|| .+||+++.
T Consensus       118 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~  197 (285)
T PRK14254        118 LRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAP  197 (285)
T ss_pred             hhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence            11223332222       22222210           122333444443        12367899999999 69999999


Q ss_pred             CCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          126 DSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +|+++  +|||||++||...++.+++.+++.
T Consensus       198 ~p~lL--LLDEPts~LD~~~~~~l~~~L~~~  226 (285)
T PRK14254        198 DPEVI--LMDEPASALDPVATSKIEDLIEEL  226 (285)
T ss_pred             CCCEE--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence            99999  999999999999999999999875

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2.9e-29  Score=208.25  Aligned_cols=151  Identities=17%  Similarity=0.116  Sum_probs=116.3

Q ss_pred             ccccCcceeccCcc-----ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc--------
Q 029613            4 VGNSTNIFWQESPI-----GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR--------   70 (190)
Q Consensus         4 ~l~~~~l~~~~~~~-----~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~--------   70 (190)
                      +|+++|++++|++.     .+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.+..        
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~-~p~~G~i~~~g~~~~~~~~~~~~   80 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL-LPDTGTIEWIFKDEKNKKKTKEK   80 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEEeceecccccccccc
Confidence            48899999999743     5999999999999999999999999999999999987 778999999875431        


Q ss_pred             --------------------cccccccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcc-e---
Q 029613           71 --------------------HGLNKNLGFSAED---------RTENIRR------------VGEVAKLFADAGLI-C---  105 (190)
Q Consensus        71 --------------------~~~~~~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~-~---  105 (190)
                                          ...+..++|.+++         ..+++..            ...+...+...++. .   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~  160 (305)
T PRK13651         81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ  160 (305)
T ss_pred             cccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence                                0112234444432         1222211            11234455555653 2   


Q ss_pred             -eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          106 -IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       106 -~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                       .+..||+||+|| .+|++++.+|+++  +|||||++||+..++.+++.+++-+
T Consensus       161 ~~~~~LSgGqkqrvalA~aL~~~P~lL--lLDEPt~~LD~~~~~~l~~~l~~l~  212 (305)
T PRK13651        161 RSPFELSGGQKRRVALAGILAMEPDFL--VFDEPTAGLDPQGVKEILEIFDNLN  212 (305)
T ss_pred             CChhhCCHHHHHHHHHHHHHHhCCCEE--EEeCCCCCCCHHHHHHHHHHHHHHH
Confidence             377899999999 6999999999999  9999999999999999999887643

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.95  E-value=4e-29  Score=186.38  Aligned_cols=115  Identities=18%  Similarity=0.172  Sum_probs=102.6

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhH
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDR   84 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~   84 (190)
                      ++++|++++|++.++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|..       .++|.++  
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~~~~-------~i~~~~~--   70 (144)
T cd03221           1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL-EPDEGIVTWGSTV-------KIGYFEQ--   70 (144)
T ss_pred             CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECCeE-------EEEEEcc--
Confidence            46789999998778999999999999999999999999999999999977 7889999998841       1233332  


Q ss_pred             HHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           85 TENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                                               +|+|++|| .+||+++.+|+++  +||||+++||...+..+.+.+++.
T Consensus        71 -------------------------lS~G~~~rv~laral~~~p~il--llDEP~~~LD~~~~~~l~~~l~~~  116 (144)
T cd03221          71 -------------------------LSGGEKMRLALAKLLLENPNLL--LLDEPTNHLDLESIEALEEALKEY  116 (144)
T ss_pred             -------------------------CCHHHHHHHHHHHHHhcCCCEE--EEeCCccCCCHHHHHHHHHHHHHc
Confidence                                     89999999 6999999999999  999999999999999999999864

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.95  E-value=5.2e-29  Score=208.81  Aligned_cols=151  Identities=17%  Similarity=0.170  Sum_probs=116.2

Q ss_pred             cccccCcceeccCc-------------cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613            3 TVGNSTNIFWQESP-------------IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus         3 ~~l~~~~l~~~~~~-------------~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      ++|+++|++++|+.             ..+++++||++++||+++|+|+||||||||+++|+|++ ++.+|.|.++|.++
T Consensus         7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~-~p~~G~I~~~G~~i   85 (331)
T PRK15079          7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV-KATDGEVAWLGKDL   85 (331)
T ss_pred             ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCcEEEECCEEC
Confidence            47899999999952             46899999999999999999999999999999999987 77899999999876


Q ss_pred             cc-------ccccccCCChhh----------HHHHHHH--------------HHHHHHHHHHcCcc-----eeecccCcc
Q 029613           70 RH-------GLNKNLGFSAED----------RTENIRR--------------VGEVAKLFADAGLI-----CIASLISPY  113 (190)
Q Consensus        70 ~~-------~~~~~i~~~~~~----------~~~~~~~--------------~~~~~~~~~~~~~~-----~~~~~lS~g  113 (190)
                      ..       ..+..++|.+++          ..+++..              ...+..++...++.     ..+..||+|
T Consensus        86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG  165 (331)
T PRK15079         86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG  165 (331)
T ss_pred             CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence            32       112233433332          1111110              01123344555552     347889999


Q ss_pred             HHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          114 RKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       114 ~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+|| .|||+++.+|+++  ++||||++||...+..+.+.+++.
T Consensus       166 ~~QRv~iArAL~~~P~ll--ilDEPts~LD~~~~~~i~~lL~~l  207 (331)
T PRK15079        166 QCQRIGIARALILEPKLI--ICDEPVSALDVSIQAQVVNLLQQL  207 (331)
T ss_pred             HHHHHHHHHHHhcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence            9999 5999999999999  999999999999999998888763

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.95  E-value=6.9e-29  Score=200.97  Aligned_cols=152  Identities=20%  Similarity=0.151  Sum_probs=115.8

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC----CCcEEEEcCcccccc--cc
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR----GKLSYILDGDNLRHG--LN   74 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~----~~g~i~~~g~~~~~~--~~   74 (190)
                      |..+++++|++++| +..+++++||++.+|++++|+|+||||||||+++|+|++ ++    .+|.|.++|.++...  ..
T Consensus         1 ~~~~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~~~~~G~i~~~g~~i~~~~~~~   78 (254)
T PRK10418          1 MPQQIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL-PAGVRQTAGRVLLDGKPVAPCALRG   78 (254)
T ss_pred             CCcEEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCCcCCEEEECCeecccccccc
Confidence            55578999999999 578999999999999999999999999999999999987 56    789999999765311  01


Q ss_pred             cccCCChhhH----------HHHHHH----------HHHHHHHHHHcCcce-------eecccCccHHHH-HHHHHhCCC
Q 029613           75 KNLGFSAEDR----------TENIRR----------VGEVAKLFADAGLIC-------IASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        75 ~~i~~~~~~~----------~~~~~~----------~~~~~~~~~~~~~~~-------~~~~lS~g~kqr-~iarall~~  126 (190)
                      ..++|.+++.          .++...          ...+...+...++..       .+..+|+||+|| .+||+++.+
T Consensus        79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~  158 (254)
T PRK10418         79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCE  158 (254)
T ss_pred             ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcC
Confidence            1223322221          011100          012334455555432       367799999999 699999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+++  +|||||++||...++.+++.+++.
T Consensus       159 p~lL--lLDEPt~~LD~~~~~~l~~~L~~~  186 (254)
T PRK10418        159 APFI--IADEPTTDLDVVAQARILDLLESI  186 (254)
T ss_pred             CCEE--EEeCCCcccCHHHHHHHHHHHHHH
Confidence            9999  999999999999999999888764

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.95  E-value=1.2e-28  Score=187.84  Aligned_cols=135  Identities=18%  Similarity=0.177  Sum_probs=105.1

Q ss_pred             cccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh
Q 029613            5 GNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED   83 (190)
Q Consensus         5 l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~   83 (190)
                      ++++|++++|+ ..++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.+++..       .++|.+++
T Consensus         1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~~~~-------~i~~~~q~   72 (166)
T cd03223           1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW-PWGSGRIGMPEGE-------DLLFLPQR   72 (166)
T ss_pred             CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCCc-------eEEEECCC
Confidence            46789999995 467999999999999999999999999999999999977 7789999998742       12233322


Q ss_pred             HHHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           84 RTENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ..-.-.   .+.+.+.. .   .+..+|+||+|| .+||+++.+|+++  +|||||++||...++.+.+.+++.
T Consensus        73 ~~~~~~---tv~~nl~~-~---~~~~LS~G~~~rv~laral~~~p~~l--llDEPt~~LD~~~~~~l~~~l~~~  137 (166)
T cd03223          73 PYLPLG---TLREQLIY-P---WDDVLSGGEQQRLAFARLLLHKPKFV--FLDEATSALDEESEDRLYQLLKEL  137 (166)
T ss_pred             Cccccc---cHHHHhhc-c---CCCCCCHHHHHHHHHHHHHHcCCCEE--EEECCccccCHHHHHHHHHHHHHh
Confidence            110000   00000000 0   356799999999 6999999999999  999999999999999999999864

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.95  E-value=1.1e-28  Score=194.45  Aligned_cols=147  Identities=16%  Similarity=0.185  Sum_probs=111.2

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccCCChh
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLGFSAE   82 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~~~~~   82 (190)
                      ++++|++++|++..  .++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++...  .+..++|.++
T Consensus         1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q   77 (211)
T cd03298           1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE-TPQSGRVLINGVDVTAAPPADRPVSMLFQ   77 (211)
T ss_pred             CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcCcCCHhHccEEEEec
Confidence            46889999998654  3999999999999999999999999999999987 78899999999765321  1112222222


Q ss_pred             h--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613           83 D--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMP  137 (190)
Q Consensus        83 ~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP  137 (190)
                      +        ..+++..            -..+..++...++.    ..+..+|+||+|| .+||+++.+|+++  +||||
T Consensus        78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~ll--llDEP  155 (211)
T cd03298          78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVL--LLDEP  155 (211)
T ss_pred             ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE--EEcCC
Confidence            1        1222210            11233445555553    2367899999999 6999999999999  99999


Q ss_pred             chhhhhcChHHHHHHHHcC
Q 029613          138 LELCEARDPKGLYKLARAG  156 (190)
Q Consensus       138 ~~~ld~~~~~~~~~~~~~~  156 (190)
                      |++||...++.+++.+++-
T Consensus       156 ~~~LD~~~~~~l~~~l~~~  174 (211)
T cd03298         156 FAALDPALRAEMLDLVLDL  174 (211)
T ss_pred             cccCCHHHHHHHHHHHHHH
Confidence            9999999999999988864

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.4e-28  Score=198.76  Aligned_cols=155  Identities=18%  Similarity=0.203  Sum_probs=115.3

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-C---CCcEEEEcCccccc-----
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-R---GKLSYILDGDNLRH-----   71 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~---~~g~i~~~g~~~~~-----   71 (190)
                      |.-|++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++.+ +   .+|.|.++|.++..     
T Consensus         1 ~~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~   80 (252)
T PRK14272          1 MTLLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP   80 (252)
T ss_pred             CeEEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence            55578999999999888899999999999999999999999999999999998732 2   37999999976532     


Q ss_pred             -ccccccCCChhh--------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHH
Q 029613           72 -GLNKNLGFSAED--------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DAC  120 (190)
Q Consensus        72 -~~~~~i~~~~~~--------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~ia  120 (190)
                       ..+..++|.+++        ..+++...             ......+...++        ...+..+|+||+|| .+|
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  160 (252)
T PRK14272         81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA  160 (252)
T ss_pred             HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence             112223333322        12222110             001111222221        12367799999999 699


Q ss_pred             HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      |+++.+|+++  +|||||++||...++.+.+.+++..
T Consensus       161 ral~~~p~ll--llDEP~~~LD~~~~~~l~~~l~~~~  195 (252)
T PRK14272        161 RALAVEPEIL--LMDEPTSALDPASTARIEDLMTDLK  195 (252)
T ss_pred             HHHhcCCCEE--EEeCCCccCCHHHHHHHHHHHHHHh
Confidence            9999999999  9999999999999999999988753

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.95  E-value=7.2e-29  Score=193.48  Aligned_cols=151  Identities=18%  Similarity=0.166  Sum_probs=112.8

Q ss_pred             ccccCcceeccCc------cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCcEEEEcCccccc-cccc
Q 029613            4 VGNSTNIFWQESP------IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILDGDNLRH-GLNK   75 (190)
Q Consensus         4 ~l~~~~l~~~~~~------~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g~i~~~g~~~~~-~~~~   75 (190)
                      .++++|++++|++      ..+++++||++++|++++|+||||||||||+++|+|++. ++.+|+|.++|.++.. ....
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~   82 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK   82 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence            3678999999975      679999999999999999999999999999999999662 5788999999987643 1223


Q ss_pred             ccCCChhhHHHHH-HHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHH
Q 029613           76 NLGFSAEDRTENI-RRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLA  153 (190)
Q Consensus        76 ~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~  153 (190)
                      .++|.+++..-.. ..+.+........      ..+|+||+|| .+||+++.+|+++  +|||||++||...++.+++.+
T Consensus        83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~------~~LS~G~~qrv~laral~~~p~il--llDEP~~~LD~~~~~~l~~~l  154 (194)
T cd03213          83 IIGYVPQDDILHPTLTVRETLMFAAKL------RGLSGGERKRVSIALELVSNPSLL--FLDEPTSGLDSSSALQVMSLL  154 (194)
T ss_pred             eEEEccCcccCCCCCcHHHHHHHHHHh------ccCCHHHHHHHHHHHHHHcCCCEE--EEeCCCcCCCHHHHHHHHHHH
Confidence            3444444311000 0011100000000      1799999999 6999999999999  999999999999999999999


Q ss_pred             HcCCCCCcc
Q 029613          154 RAGKIKGLL  162 (190)
Q Consensus       154 ~~~~~~~~~  162 (190)
                      ++...+|.+
T Consensus       155 ~~~~~~~~t  163 (194)
T cd03213         155 RRLADTGRT  163 (194)
T ss_pred             HHHHhCCCE
Confidence            875433433

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.7e-28  Score=198.07  Aligned_cols=153  Identities=20%  Similarity=0.177  Sum_probs=114.8

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-C---CCcEEEEcCccccc-----
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-R---GKLSYILDGDNLRH-----   71 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~---~~g~i~~~g~~~~~-----   71 (190)
                      |. +++++|+++.|++.++++++||++++|++++|+|+||||||||+++|+|++.. +   .+|+|.++|.++..     
T Consensus         1 ~~-~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~   79 (250)
T PRK14240          1 MG-KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV   79 (250)
T ss_pred             CC-eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence            44 57899999999888899999999999999999999999999999999997631 2   58999999977532     


Q ss_pred             -ccccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHH
Q 029613           72 -GLNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACR  121 (190)
Q Consensus        72 -~~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iar  121 (190)
                       ..+..++|.+++       ..+++...             ..+...+...++        ...+..+|+||+|| ++||
T Consensus        80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar  159 (250)
T PRK14240         80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIAR  159 (250)
T ss_pred             HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence             112223333322       12222110             011222233332        12367799999999 6999


Q ss_pred             HhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          122 AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       122 all~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++.+|+++  +|||||++||...++.+.+.+++.
T Consensus       160 al~~~p~ll--llDEP~~~LD~~~~~~l~~~l~~~  192 (250)
T PRK14240        160 ALAVEPEVL--LMDEPTSALDPISTLKIEELIQEL  192 (250)
T ss_pred             HHhcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence            999999999  999999999999999999988865

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.95  E-value=8.4e-29  Score=196.15  Aligned_cols=149  Identities=24%  Similarity=0.278  Sum_probs=111.4

Q ss_pred             cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      ++++|+++.|+.  +.+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|.++..    ..+..++
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~   81 (220)
T cd03245           3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY-KPTSGSVLLDGTDIRQLDPADLRRNIG   81 (220)
T ss_pred             EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence            578999999975  57999999999999999999999999999999999977 7789999999976531    1112233


Q ss_pred             CChhh-------HHHHHHHH------HHHHHHHHHcCcce---------------eecccCccHHHH-HHHHHhCCCCCe
Q 029613           79 FSAED-------RTENIRRV------GEVAKLFADAGLIC---------------IASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        79 ~~~~~-------~~~~~~~~------~~~~~~~~~~~~~~---------------~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      |.+++       ..+++...      ..+...+...++..               .+..+|+||+|| .+||+++.+|++
T Consensus        82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l  161 (220)
T cd03245          82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI  161 (220)
T ss_pred             EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence            33322       12222100      01112222222211               135799999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +  +|||||++||...++.+++.+++-
T Consensus       162 l--llDEPt~~LD~~~~~~l~~~l~~~  186 (220)
T cd03245         162 L--LLDEPTSAMDMNSEERLKERLRQL  186 (220)
T ss_pred             E--EEeCccccCCHHHHHHHHHHHHHh
Confidence            9  999999999999999999999874

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.95  E-value=1.1e-28  Score=210.21  Aligned_cols=159  Identities=18%  Similarity=0.228  Sum_probs=125.0

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----cccc
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNK   75 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~   75 (190)
                      |.+.+++++++|.|++..+.+++||++.+|||++|+|+||||||||+++|.|.+ +|++|+|+++|+.+.-     ..+.
T Consensus         1 ~~~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~-~P~~GeI~v~G~~v~~~sP~dA~~~   79 (501)
T COG3845           1 MEPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY-QPDSGEIRVDGKEVRIKSPRDAIRL   79 (501)
T ss_pred             CCceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc-cCCcceEEECCEEeccCCHHHHHHc
Confidence            456789999999999999999999999999999999999999999999999987 8999999999987632     1122


Q ss_pred             ccCCChhh--------HHHH--------------HHH-HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCC
Q 029613           76 NLGFSAED--------RTEN--------------IRR-VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        76 ~i~~~~~~--------~~~~--------------~~~-~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~  127 (190)
                      .+++..|.        ..||              .+. -..+..+.+..++.    ..+..+|-|++|| +|.++|+.++
T Consensus        80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a  159 (501)
T COG3845          80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGA  159 (501)
T ss_pred             CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCC
Confidence            22222221        0111              111 12344444555553    4588999999999 7999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                      +++  +|||||+.|.+...+.+++.++....+|.+
T Consensus       160 ~iL--ILDEPTaVLTP~E~~~lf~~l~~l~~~G~t  192 (501)
T COG3845         160 RLL--ILDEPTAVLTPQEADELFEILRRLAAEGKT  192 (501)
T ss_pred             CEE--EEcCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence            999  999999999999999999999886666644

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.95  E-value=2.2e-28  Score=193.03  Aligned_cols=154  Identities=17%  Similarity=0.141  Sum_probs=119.7

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc-----ccccccc
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR-----HGLNKNL   77 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~-----~~~~~~i   77 (190)
                      ++|+++|++..|+++++|+++|.++++||-.+|+||||||||||+++++|.. ++++|.+.+.|+.+.     ..+++.+
T Consensus        30 ~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~-~pssg~~~~~G~~~G~~~~~~elrk~I  108 (257)
T COG1119          30 PLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH-PPSSGDVTLLGRRFGKGETIFELRKRI  108 (257)
T ss_pred             ceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc-CCCCCceeeeeeeccCCcchHHHHHHh
Confidence            4689999999999999999999999999999999999999999999999977 666888777665442     2344555


Q ss_pred             CCChhhHHHHH---------------------------HHHHHHHHHHHHcCcce----eecccCccHHHHH-HHHHhCC
Q 029613           78 GFSAEDRTENI---------------------------RRVGEVAKLFADAGLIC----IASLISPYRKDRD-ACRAMLP  125 (190)
Q Consensus        78 ~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~----~~~~lS~g~kqr~-iarall~  125 (190)
                      |++..+.....                           ........++...++..    ....||-||+||. ||||++.
T Consensus       109 G~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~  188 (257)
T COG1119         109 GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVK  188 (257)
T ss_pred             CccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhc
Confidence            55544321110                           11122334444455443    3667999999995 9999999


Q ss_pred             CCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCC
Q 029613          126 DSNFIEVFMNMPLELCEARDPKGLYKLARAGKIK  159 (190)
Q Consensus       126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~  159 (190)
                      +|+++  |||||+++||...++.+++.+.+....
T Consensus       189 ~P~LL--iLDEP~~GLDl~~re~ll~~l~~~~~~  220 (257)
T COG1119         189 DPELL--ILDEPAQGLDLIAREQLLNRLEELAAS  220 (257)
T ss_pred             CCCEE--EecCccccCChHHHHHHHHHHHHHhcC
Confidence            99999  999999999999999999999875443

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.95  E-value=7.8e-29  Score=207.72  Aligned_cols=151  Identities=17%  Similarity=0.167  Sum_probs=115.9

Q ss_pred             cccccCcceeccC----ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC---CcEEEEcCcccccc---
Q 029613            3 TVGNSTNIFWQES----PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG---KLSYILDGDNLRHG---   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~----~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~---~g~i~~~g~~~~~~---   72 (190)
                      ++|+++|+++.|.    ...+++++||++.+||+++|+|+||||||||+++|+|++ ++.   +|.|.++|.++...   
T Consensus        11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~-~p~~~~sG~I~~~G~~i~~~~~~   89 (330)
T PRK09473         11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL-AANGRIGGSATFNGREILNLPEK   89 (330)
T ss_pred             ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCC-CCCCCCCeEEEECCEECCcCCHH
Confidence            4789999999994    357999999999999999999999999999999999987 454   89999999876321   


Q ss_pred             ----cc-cccCCChhhH----------HHHH----HH---------HHHHHHHHHHcCcc-------eeecccCccHHHH
Q 029613           73 ----LN-KNLGFSAEDR----------TENI----RR---------VGEVAKLFADAGLI-------CIASLISPYRKDR  117 (190)
Q Consensus        73 ----~~-~~i~~~~~~~----------~~~~----~~---------~~~~~~~~~~~~~~-------~~~~~lS~g~kqr  117 (190)
                          .+ ..++|.+++.          .+++    ..         ...+..++...++.       .++..||+||+||
T Consensus        90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR  169 (330)
T PRK09473         90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR  169 (330)
T ss_pred             HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence                11 2344444431          1111    00         11233445555542       2578899999999


Q ss_pred             -HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          118 -DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       118 -~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                       .|||+++.+|+++  ++||||++||...+..+.+.+++.
T Consensus       170 v~IArAL~~~P~ll--ilDEPts~LD~~~~~~i~~lL~~l  207 (330)
T PRK09473        170 VMIAMALLCRPKLL--IADEPTTALDVTVQAQIMTLLNEL  207 (330)
T ss_pred             HHHHHHHHcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence             5999999999999  999999999999999999888764

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.3e-28  Score=199.02  Aligned_cols=152  Identities=20%  Similarity=0.149  Sum_probs=114.2

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------c
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------G   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~   72 (190)
                      +|++++|++++|++.++++++||++++|++++|+|+||||||||+++|+|++..    +.+|.|.++|.++..      .
T Consensus         9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   88 (264)
T PRK14243          9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE   88 (264)
T ss_pred             eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence            478999999999888899999999999999999999999999999999997632    368999999976521      1


Q ss_pred             cccccCCChhh-------HHHHHHHH-----------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHhCC
Q 029613           73 LNKNLGFSAED-------RTENIRRV-----------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAMLP  125 (190)
Q Consensus        73 ~~~~i~~~~~~-------~~~~~~~~-----------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iarall~  125 (190)
                      .+..++|.+++       ..+++...           ......+...++        ...+..+|+||+|| .+||+++.
T Consensus        89 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~  168 (264)
T PRK14243         89 VRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV  168 (264)
T ss_pred             HhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence            12223333322       22222110           011122233232        12366799999999 69999999


Q ss_pred             CCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          126 DSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +|+++  +|||||++||...++.+++.+++-
T Consensus       169 ~p~ll--lLDEPt~~LD~~~~~~l~~~L~~~  197 (264)
T PRK14243        169 QPEVI--LMDEPCSALDPISTLRIEELMHEL  197 (264)
T ss_pred             CCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence            99999  999999999999999999998864

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=6.8e-29  Score=204.57  Aligned_cols=150  Identities=19%  Similarity=0.131  Sum_probs=114.2

Q ss_pred             ccccCcceeccCcc-----ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------
Q 029613            4 VGNSTNIFWQESPI-----GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------   71 (190)
Q Consensus         4 ~l~~~~l~~~~~~~-----~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------   71 (190)
                      .++++|++++|++.     .+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..       
T Consensus         6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~   84 (289)
T PRK13645          6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI-ISETGQTIVGDYAIPANLKKIKE   84 (289)
T ss_pred             eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEcccccccccc
Confidence            57899999999764     4999999999999999999999999999999999987 7889999999876521       


Q ss_pred             --ccccccCCChhh---------HHHHHHHH------------HHHHHHHHHcCcc-----eeecccCccHHHH-HHHHH
Q 029613           72 --GLNKNLGFSAED---------RTENIRRV------------GEVAKLFADAGLI-----CIASLISPYRKDR-DACRA  122 (190)
Q Consensus        72 --~~~~~i~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iara  122 (190)
                        ..+..++|.+++         ..+++...            ..+..++...++.     ..+..||+||+|| .+||+
T Consensus        85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara  164 (289)
T PRK13645         85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI  164 (289)
T ss_pred             HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence              112233443332         11222110            1122334444442     2367799999999 69999


Q ss_pred             hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++.+|+++  +|||||++||+..++.+++.+++-
T Consensus       165 l~~~p~lL--lLDEPt~~LD~~~~~~l~~~l~~~  196 (289)
T PRK13645        165 IAMDGNTL--VLDEPTGGLDPKGEEDFINLFERL  196 (289)
T ss_pred             HHhCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            99999999  999999999999999999888753

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.1e-28  Score=197.69  Aligned_cols=152  Identities=20%  Similarity=0.150  Sum_probs=115.1

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hC---CCcEEEEcCccccc------c
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SR---GKLSYILDGDNLRH------G   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~---~~g~i~~~g~~~~~------~   72 (190)
                      +|++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|+.. .+   .+|.|.++|.++..      .
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~   83 (252)
T PRK14239          4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD   83 (252)
T ss_pred             ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence            47899999999988889999999999999999999999999999999999752 34   48999999976521      1


Q ss_pred             cccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHh
Q 029613           73 LNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAM  123 (190)
Q Consensus        73 ~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iaral  123 (190)
                      .+..++|.+++       ..+++...             ..+...+...++        ...+..+|+||+|| .+||++
T Consensus        84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  163 (252)
T PRK14239         84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL  163 (252)
T ss_pred             hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence            12233333332       22222210             011122333332        12367799999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||...++.+++.+++-
T Consensus       164 ~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~  194 (252)
T PRK14239        164 ATSPKII--LLDEPTSALDPISAGKIEETLLGL  194 (252)
T ss_pred             hcCCCEE--EEcCCccccCHHHHHHHHHHHHHH
Confidence            9999999  999999999999999999999864

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.95  E-value=1.4e-28  Score=195.11  Aligned_cols=150  Identities=21%  Similarity=0.215  Sum_probs=115.6

Q ss_pred             cccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------cc
Q 029613            5 GNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------GL   73 (190)
Q Consensus         5 l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~~   73 (190)
                      ++++|+++.|+.    +.+++++||++++|++++|+|+||||||||+++|+|.+ ++.+|+|.++|.++..       ..
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~   80 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR-SVQEGSLKVLGQELYGASEKELVQL   80 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEhHhcCHhHHHHH
Confidence            578999999974    67999999999999999999999999999999999977 7889999999987632       11


Q ss_pred             ccccCCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613           74 NKNLGFSAED--------RTENIRR-------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        74 ~~~i~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~  127 (190)
                      +..++|.+++        ..+++..             ...+..++...++..    .+..+|+||+|| .+||+++.+|
T Consensus        81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p  160 (220)
T TIGR02982        81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP  160 (220)
T ss_pred             HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence            2233333332        1111110             012334445555532    367799999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      +++  +||||+++||...++.+++.+++-.
T Consensus       161 ~il--llDEP~~~LD~~~~~~l~~~l~~~~  188 (220)
T TIGR02982       161 KLV--LADEPTAALDSKSGRDVVELMQKLA  188 (220)
T ss_pred             CEE--EEeCCCCcCCHHHHHHHHHHHHHHH
Confidence            999  9999999999999999999987643

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.4e-28  Score=198.46  Aligned_cols=151  Identities=19%  Similarity=0.161  Sum_probs=114.8

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------cc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------GL   73 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~~   73 (190)
                      |++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|++.+    +.+|.|.++|.++..      ..
T Consensus         3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~   82 (250)
T PRK14262          3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY   82 (250)
T ss_pred             eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence            78999999999888899999999999999999999999999999999998732    378999999976531      11


Q ss_pred             ccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHhC
Q 029613           74 NKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGLI--------CIASLISPYRKDR-DACRAML  124 (190)
Q Consensus        74 ~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iarall  124 (190)
                      +..++|.+++       ..+++...             ..+...+...++.        ..+..+|+||+|| .+||+++
T Consensus        83 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~  162 (250)
T PRK14262         83 RKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA  162 (250)
T ss_pred             hhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh
Confidence            2233333322       12222110             0112223333331        2367799999999 6999999


Q ss_pred             CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+|+++  +|||||++||...+..+.+.+++-
T Consensus       163 ~~p~ll--llDEP~~~LD~~~~~~l~~~l~~~  192 (250)
T PRK14262        163 VEPEVI--LLDEPTSALDPIATQRIEKLLEEL  192 (250)
T ss_pred             CCCCEE--EEeCCccccCHHHHHHHHHHHHHH
Confidence            999999  999999999999999999988864

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.7e-28  Score=197.89  Aligned_cols=153  Identities=21%  Similarity=0.157  Sum_probs=114.7

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc-----
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH-----   71 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~-----   71 (190)
                      |+ +++++|+++.|+.+.+++++||++++|++++|+|+||||||||+++|+|++.+    +.+|.+.++|.++..     
T Consensus         1 ~~-~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~   79 (249)
T PRK14253          1 MN-KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA   79 (249)
T ss_pred             CC-eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence            53 78999999999988899999999999999999999999999999999998732    258999999876521     


Q ss_pred             ccccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHH
Q 029613           72 GLNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRA  122 (190)
Q Consensus        72 ~~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iara  122 (190)
                      ..+..++|.+++       ..+++...             ..+...+...++        ...+..+|+||+|| .+||+
T Consensus        80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara  159 (249)
T PRK14253         80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIART  159 (249)
T ss_pred             HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHH
Confidence            112223333322       12222110             011122223332        12356799999999 69999


Q ss_pred             hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++.+|+++  +|||||++||...++.+++.+++.
T Consensus       160 l~~~p~ll--llDEP~~~LD~~~~~~l~~~l~~~  191 (249)
T PRK14253        160 IAMEPDVI--LMDEPTSALDPIATHKIEELMEEL  191 (249)
T ss_pred             HHcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence            99999999  999999999999999999988874

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.95  E-value=8.9e-29  Score=192.05  Aligned_cols=140  Identities=18%  Similarity=0.235  Sum_probs=105.8

Q ss_pred             cCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc------ccccccCCChhh----
Q 029613           14 ESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------GLNKNLGFSAED----   83 (190)
Q Consensus        14 ~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------~~~~~i~~~~~~----   83 (190)
                      |+.+.+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..      ..+..++|.+++    
T Consensus         2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   80 (190)
T TIGR01166         2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL-RPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ   80 (190)
T ss_pred             CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence            35667999999999999999999999999999999999977 7889999999976531      111223333332    


Q ss_pred             -----HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhh
Q 029613           84 -----RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELC  141 (190)
Q Consensus        84 -----~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~l  141 (190)
                           ..+++..            ...+..++...++..    .+..+|+||+|| .+||+++.+|+++  +|||||++|
T Consensus        81 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll--llDEPt~~L  158 (190)
T TIGR01166        81 LFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVL--LLDEPTAGL  158 (190)
T ss_pred             cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEcCCcccC
Confidence                 1122211            011233444445432    367899999999 6999999999999  999999999


Q ss_pred             hhcChHHHHHHHHcC
Q 029613          142 EARDPKGLYKLARAG  156 (190)
Q Consensus       142 d~~~~~~~~~~~~~~  156 (190)
                      |...++.+++.+++-
T Consensus       159 D~~~~~~~~~~l~~~  173 (190)
T TIGR01166       159 DPAGREQMLAILRRL  173 (190)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.95  E-value=2.3e-28  Score=193.01  Aligned_cols=148  Identities=15%  Similarity=0.157  Sum_probs=112.5

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCChh
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSAE   82 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~~   82 (190)
                      ++++|+++.|+.  .+.++||++.+|++++|+||||||||||+++|+|++ ++.+|+|.++|.++..  ..+..++|.++
T Consensus         1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~i~~v~q   77 (213)
T TIGR01277         1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI-EPASGSIKVNDQSHTGLAPYQRPVSMLFQ   77 (213)
T ss_pred             CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEcccCChhccceEEEec
Confidence            468999999974  568999999999999999999999999999999977 7889999999976532  11122333222


Q ss_pred             h--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613           83 D--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMP  137 (190)
Q Consensus        83 ~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP  137 (190)
                      +        ..+++..            -..+..++...++.    ..+..+|+||+|| .+||+++.+|+++  +||||
T Consensus        78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll--llDEP  155 (213)
T TIGR01277        78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPIL--LLDEP  155 (213)
T ss_pred             cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE--EEcCC
Confidence            2        1222211            01223344555553    2367899999999 6999999999999  99999


Q ss_pred             chhhhhcChHHHHHHHHcCC
Q 029613          138 LELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       138 ~~~ld~~~~~~~~~~~~~~~  157 (190)
                      |++||...++.+++.+++..
T Consensus       156 t~~LD~~~~~~~~~~l~~~~  175 (213)
T TIGR01277       156 FSALDPLLREEMLALVKQLC  175 (213)
T ss_pred             CccCCHHHHHHHHHHHHHHH
Confidence            99999999999999888643

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.9e-28  Score=216.58  Aligned_cols=148  Identities=22%  Similarity=0.253  Sum_probs=113.7

Q ss_pred             ccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613            4 VGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN   76 (190)
Q Consensus         4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~   76 (190)
                      .++++||+|+|..   .++++|+||+++|||+++|+||||+||||++.+|..++ +|.+|.|.+||.++..    .++..
T Consensus       465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY-~PtsG~IllDG~~i~~~~~~~lr~~  543 (716)
T KOG0058|consen  465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY-DPTSGRILLDGVPISDINHKYLRRK  543 (716)
T ss_pred             eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc-CCCCCeEEECCeehhhcCHHHHHHH
Confidence            3789999999965   46999999999999999999999999999999999966 8999999999998753    34555


Q ss_pred             cCCChhh-------HHHHHH------------HHHHHHH---HHHHc--Cc----ceeecccCccHHHH-HHHHHhCCCC
Q 029613           77 LGFSAED-------RTENIR------------RVGEVAK---LFADA--GL----ICIASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        77 i~~~~~~-------~~~~~~------------~~~~~~~---~~~~~--~~----~~~~~~lS~g~kqr-~iarall~~~  127 (190)
                      ++++.|+       ..+|+.            ..++.+.   ....+  +.    -+-...+||||||| +|||||+++|
T Consensus       544 Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P  623 (716)
T KOG0058|consen  544 IGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNP  623 (716)
T ss_pred             eeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCC
Confidence            5665554       223322            1122211   11111  11    12366799999999 7999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHH
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLAR  154 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~  154 (190)
                      .++  ||||.||+||......+.+.+.
T Consensus       624 ~VL--ILDEATSALDaeSE~lVq~aL~  648 (716)
T KOG0058|consen  624 RVL--ILDEATSALDAESEYLVQEALD  648 (716)
T ss_pred             CEE--EEechhhhcchhhHHHHHHHHH
Confidence            999  9999999999998766666654

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.95  E-value=2.6e-28  Score=195.12  Aligned_cols=149  Identities=19%  Similarity=0.138  Sum_probs=115.0

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccCCChh
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLGFSAE   82 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~~~~~   82 (190)
                      +.++|++++|+++.+++++||++.+|++++|+|+||||||||+++|+|.+ ++..|.|.++|.++...  .+..++|.++
T Consensus         1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q   79 (232)
T cd03300           1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE-TPTSGEILLDGKDITNLPPHKRPVNTVFQ   79 (232)
T ss_pred             CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcCcCChhhcceEEEec
Confidence            46889999998888999999999999999999999999999999999987 78899999999765321  1122333332


Q ss_pred             h--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613           83 D--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMP  137 (190)
Q Consensus        83 ~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP  137 (190)
                      +        ..+++...            ..+..++...++..    .+..+|+||+|| .+||+++.+|+++  +||||
T Consensus        80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ll--llDEP  157 (232)
T cd03300          80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVL--LLDEP  157 (232)
T ss_pred             ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE--EEcCC
Confidence            2        12222110            12223344445532    367799999999 6999999999999  99999


Q ss_pred             chhhhhcChHHHHHHHHcC
Q 029613          138 LELCEARDPKGLYKLARAG  156 (190)
Q Consensus       138 ~~~ld~~~~~~~~~~~~~~  156 (190)
                      |++||...++.+++.+++-
T Consensus       158 ~~gLD~~~~~~l~~~l~~~  176 (232)
T cd03300         158 LGALDLKLRKDMQLELKRL  176 (232)
T ss_pred             cccCCHHHHHHHHHHHHHH
Confidence            9999999999999988764

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.95  E-value=1.7e-28  Score=207.63  Aligned_cols=142  Identities=20%  Similarity=0.238  Sum_probs=112.2

Q ss_pred             eccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----c----ccccCCChhh
Q 029613           12 WQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----L----NKNLGFSAED   83 (190)
Q Consensus        12 ~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----~----~~~i~~~~~~   83 (190)
                      |+|+++.+++++||++++||+++|+||||||||||+++|+|++ ++.+|.|+++|.++...    +    +..++|.+++
T Consensus         1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~-~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~   79 (363)
T TIGR01186         1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI-EPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ   79 (363)
T ss_pred             CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC-CCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence            5688889999999999999999999999999999999999977 78999999999876431    1    2334444432


Q ss_pred             --------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613           84 --------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL  138 (190)
Q Consensus        84 --------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~  138 (190)
                              ..+++..            ...+..++...++..    .+..||+||+|| .+|||++.+|+++  +|||||
T Consensus        80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iL--LlDEP~  157 (363)
T TIGR01186        80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDIL--LMDEAF  157 (363)
T ss_pred             CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCc
Confidence                    2233221            122344555555543    477899999999 5999999999999  999999


Q ss_pred             hhhhhcChHHHHHHHHcC
Q 029613          139 ELCEARDPKGLYKLARAG  156 (190)
Q Consensus       139 ~~ld~~~~~~~~~~~~~~  156 (190)
                      ++||+..++.+++.+.+.
T Consensus       158 saLD~~~r~~l~~~l~~l  175 (363)
T TIGR01186       158 SALDPLIRDSMQDELKKL  175 (363)
T ss_pred             ccCCHHHHHHHHHHHHHH
Confidence            999999999999888764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.95  E-value=2.1e-28  Score=199.73  Aligned_cols=152  Identities=20%  Similarity=0.208  Sum_probs=115.9

Q ss_pred             CCcccccCcceeccC---------ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613            1 MATVGNSTNIFWQES---------PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH   71 (190)
Q Consensus         1 m~~~l~~~~l~~~~~---------~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~   71 (190)
                      |. ||+++|+++.|+         ++.+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..
T Consensus         1 ~~-~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~sG~i~~~g~~~~~   78 (268)
T PRK10419          1 MT-LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE-SPSQGNVSWRGEPLAK   78 (268)
T ss_pred             Cc-eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEeccc
Confidence            53 789999999997         468999999999999999999999999999999999977 7889999999976532


Q ss_pred             -------ccccccCCChhhH----------HHHHH-------------HHHHHHHHHHHcCcc-----eeecccCccHHH
Q 029613           72 -------GLNKNLGFSAEDR----------TENIR-------------RVGEVAKLFADAGLI-----CIASLISPYRKD  116 (190)
Q Consensus        72 -------~~~~~i~~~~~~~----------~~~~~-------------~~~~~~~~~~~~~~~-----~~~~~lS~g~kq  116 (190)
                             ..+..++|.+++.          .+++.             ....+..++...++.     ..+..+|+||+|
T Consensus        79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~q  158 (268)
T PRK10419         79 LNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQ  158 (268)
T ss_pred             cChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHH
Confidence                   1112233332221          11110             001233444455542     236679999999


Q ss_pred             H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      | .+||+++.+|+++  +|||||++||...++.+++.+++.
T Consensus       159 rl~laral~~~p~ll--lLDEPt~~LD~~~~~~~~~~l~~~  197 (268)
T PRK10419        159 RVCLARALAVEPKLL--ILDEAVSNLDLVLQAGVIRLLKKL  197 (268)
T ss_pred             HHHHHHHHhcCCCEE--EEeCCCcccCHHHHHHHHHHHHHH
Confidence            9 6999999999999  999999999999999998888764

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.95  E-value=1.4e-28  Score=195.91  Aligned_cols=150  Identities=21%  Similarity=0.208  Sum_probs=111.7

Q ss_pred             cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      ++++|++++|++ ..+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..    ..+..++|
T Consensus         3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~   81 (229)
T cd03254           3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY-DPQKGQILIDGIDIRDISRKSLRSMIGV   81 (229)
T ss_pred             EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence            578999999975 57999999999999999999999999999999999987 7889999999976532    11222344


Q ss_pred             Chhh-------HHHHHHHH------HHHH---------HHHHHc--Cc----ceeecccCccHHHH-HHHHHhCCCCCeE
Q 029613           80 SAED-------RTENIRRV------GEVA---------KLFADA--GL----ICIASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        80 ~~~~-------~~~~~~~~------~~~~---------~~~~~~--~~----~~~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      .+++       ..+++...      ..+.         ..+...  ++    ...+..+|+||+|| .+||+++.+|+++
T Consensus        82 ~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ll  161 (229)
T cd03254          82 VLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKIL  161 (229)
T ss_pred             ecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            3332       11111100      0111         111111  11    11256799999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                        +|||||++||...++.+++.+++-.
T Consensus       162 --llDEP~~~LD~~~~~~l~~~l~~~~  186 (229)
T cd03254         162 --ILDEATSNIDTETEKLIQEALEKLM  186 (229)
T ss_pred             --EEeCccccCCHHHHHHHHHHHHHhc
Confidence              9999999999999999999998753

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.8e-28  Score=207.22  Aligned_cols=147  Identities=22%  Similarity=0.228  Sum_probs=113.3

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--------cccc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--------GLNK   75 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--------~~~~   75 (190)
                      ||++ |++++|+++.+  ++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..        ....
T Consensus         1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~~   76 (352)
T PRK11144          1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLT-RPQKGRIVLNGRVLFDAEKGICLPPEKR   76 (352)
T ss_pred             CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccccchhhC
Confidence            4677 99999987543  899999999999999999999999999999977 7889999999976532        1122


Q ss_pred             ccCCChhh--------HHHHHHH------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613           76 NLGFSAED--------RTENIRR------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNM  136 (190)
Q Consensus        76 ~i~~~~~~--------~~~~~~~------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDE  136 (190)
                      .++|.+++        ..+++..      -..+..++...++..    .+..||+||+|| .+||+++.+|+++  +|||
T Consensus        77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ll--LLDE  154 (352)
T PRK11144         77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELL--LMDE  154 (352)
T ss_pred             CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE--EEcC
Confidence            34444333        2233221      112344555555543    377899999999 6999999999999  9999


Q ss_pred             CchhhhhcChHHHHHHHHcC
Q 029613          137 PLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       137 P~~~ld~~~~~~~~~~~~~~  156 (190)
                      ||++||...++.+.+.+++-
T Consensus       155 Pts~LD~~~~~~l~~~L~~l  174 (352)
T PRK11144        155 PLASLDLPRKRELLPYLERL  174 (352)
T ss_pred             CcccCCHHHHHHHHHHHHHH
Confidence            99999999999988888753

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.9e-28  Score=200.29  Aligned_cols=150  Identities=19%  Similarity=0.187  Sum_probs=115.0

Q ss_pred             ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC----CCcEEEEcCcccccc---
Q 029613            4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR----GKLSYILDGDNLRHG---   72 (190)
Q Consensus         4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~----~~g~i~~~g~~~~~~---   72 (190)
                      +|+++|++.+|..    ..+++|+||++++||+++|+|+|||||||++++|.|+++.+    .+|+|.|+|+++..-   
T Consensus         1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~   80 (316)
T COG0444           1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK   80 (316)
T ss_pred             CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence            4789999998843    57999999999999999999999999999999999998522    357899999875321   


Q ss_pred             -----cccccCCChhh--------------HHHHHHH----------HHHHHHHHHHcCcc-------eeecccCccHHH
Q 029613           73 -----LNKNLGFSAED--------------RTENIRR----------VGEVAKLFADAGLI-------CIASLISPYRKD  116 (190)
Q Consensus        73 -----~~~~i~~~~~~--------------~~~~~~~----------~~~~~~~~~~~~~~-------~~~~~lS~g~kq  116 (190)
                           ....+++.+|+              ..+.+..          ......+++..++.       .++.++||||+|
T Consensus        81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ  160 (316)
T COG0444          81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ  160 (316)
T ss_pred             HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence                 01123344433              1111111          12344556665554       358999999999


Q ss_pred             H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      | .||.|++.+|+++  |.||||++||...+.++.+.+++
T Consensus       161 RV~IAmala~~P~Ll--IADEPTTALDvt~QaqIl~Ll~~  198 (316)
T COG0444         161 RVMIAMALALNPKLL--IADEPTTALDVTVQAQILDLLKE  198 (316)
T ss_pred             HHHHHHHHhCCCCEE--EeCCCcchhhHHHHHHHHHHHHH
Confidence            9 5999999999999  99999999999999998888876

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.95  E-value=1.9e-28  Score=200.45  Aligned_cols=150  Identities=18%  Similarity=0.170  Sum_probs=113.6

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC--------CcEEEEcCccccc----
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG--------KLSYILDGDNLRH----   71 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~--------~g~i~~~g~~~~~----   71 (190)
                      ||+++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.        +|.|.++|.++..    
T Consensus         1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~-~p~~~~~~~~~~G~i~~~g~~~~~~~~~   79 (272)
T PRK13547          1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL-TGGGAPRGARVTGDVTLNGEPLAAIDAP   79 (272)
T ss_pred             CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCcccccccCCceEEEECCEEcccCCHH
Confidence            478999999999889999999999999999999999999999999999987 555        8999999976532    


Q ss_pred             ccccccCCChhh--------HHHHHHH----------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHH
Q 029613           72 GLNKNLGFSAED--------RTENIRR----------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRA  122 (190)
Q Consensus        72 ~~~~~i~~~~~~--------~~~~~~~----------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iara  122 (190)
                      .....++|.+++        ..+++..                -..+...+...++.    ..+..||+||+|| .+||+
T Consensus        80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara  159 (272)
T PRK13547         80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARV  159 (272)
T ss_pred             HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence            011112222211        1222211                01122334444443    2367899999999 69999


Q ss_pred             hC---------CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          123 ML---------PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       123 ll---------~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++         .+|+++  +|||||++||+..++.+++.+++-
T Consensus       160 l~~~~~~~~~~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~  200 (272)
T PRK13547        160 LAQLWPPHDAAQPPRYL--LLDEPTAALDLAHQHRLLDTVRRL  200 (272)
T ss_pred             HhccccccccCCCCCEE--EEcCccccCCHHHHHHHHHHHHHH
Confidence            99         499999  999999999999999999988864

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.95  E-value=1.8e-28  Score=197.53  Aligned_cols=151  Identities=14%  Similarity=0.018  Sum_probs=111.6

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCcEEEEcCcccccc-----ccccc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILDGDNLRHG-----LNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g~i~~~g~~~~~~-----~~~~i   77 (190)
                      |++++|+++.|++.++++++||++++|++++|+|+||||||||+++|+|++. ++.+|.|.++|.++...     .+..+
T Consensus         1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   80 (248)
T PRK09580          1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI   80 (248)
T ss_pred             CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence            4789999999988889999999999999999999999999999999999752 57899999999765321     11123


Q ss_pred             CCChhhH--------HHHHHH------------------H-HHHHHHHHHcCcc-----eeec-ccCccHHHH-HHHHHh
Q 029613           78 GFSAEDR--------TENIRR------------------V-GEVAKLFADAGLI-----CIAS-LISPYRKDR-DACRAM  123 (190)
Q Consensus        78 ~~~~~~~--------~~~~~~------------------~-~~~~~~~~~~~~~-----~~~~-~lS~g~kqr-~iaral  123 (190)
                      +|.+++.        ..+...                  . ..+...+...++.     ..+. .+|+||+|| .+||++
T Consensus        81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral  160 (248)
T PRK09580         81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA  160 (248)
T ss_pred             EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence            3322221        000000                  0 0111222222331     1132 699999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||...++.+.+.+++.
T Consensus       161 ~~~p~il--lLDEPt~~LD~~~~~~l~~~l~~l  191 (248)
T PRK09580        161 VLEPELC--ILDESDSGLDIDALKIVADGVNSL  191 (248)
T ss_pred             HcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence            9999999  999999999999999999887754

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.4e-28  Score=202.20  Aligned_cols=151  Identities=17%  Similarity=0.229  Sum_probs=115.9

Q ss_pred             cccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCC---cEEEEcCccccc----cc
Q 029613            3 TVGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGK---LSYILDGDNLRH----GL   73 (190)
Q Consensus         3 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~---g~i~~~g~~~~~----~~   73 (190)
                      .|++++|++++|++  .++++++||++.+|++++|+|+||||||||+++|+|++ ++.+   |.|.++|.++..    ..
T Consensus         4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~-~p~~g~~G~i~i~g~~~~~~~~~~~   82 (282)
T PRK13640          4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL-LPDDNPNSKITVDGITLTAKTVWDI   82 (282)
T ss_pred             ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc-CCCCCCCcEEEECCEECCcCCHHHH
Confidence            47899999999964  46999999999999999999999999999999999987 5554   899999987642    11


Q ss_pred             ccccCCChhh---------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613           74 NKNLGFSAED---------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        74 ~~~i~~~~~~---------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~  127 (190)
                      ...++|.+++         ..+++...            ..+..++..+++..    .+..+|+||+|| .+||+++.+|
T Consensus        83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P  162 (282)
T PRK13640         83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP  162 (282)
T ss_pred             HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence            2234443332         11222110            11233444555532    367899999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++  +|||||++||+..++.+.+.+++-
T Consensus       163 ~ll--llDEPt~gLD~~~~~~l~~~l~~l  189 (282)
T PRK13640        163 KII--ILDESTSMLDPAGKEQILKLIRKL  189 (282)
T ss_pred             CEE--EEECCcccCCHHHHHHHHHHHHHH
Confidence            999  999999999999999999988763

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.95  E-value=2.4e-28  Score=195.98  Aligned_cols=150  Identities=22%  Similarity=0.238  Sum_probs=115.8

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCChh
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSAE   82 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~~   82 (190)
                      ++++|++++|++.++++++||++.+|++++|+|+||||||||+++|+|.+ ++..|++.++|.++..  .....++|.++
T Consensus         1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~i~g~~~~~~~~~~~~i~~~~q   79 (237)
T TIGR00968         1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE-QPDSGRIRLNGQDATRVHARDRKIGFVFQ   79 (237)
T ss_pred             CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcCcCChhhcCEEEEec
Confidence            46889999999889999999999999999999999999999999999977 7889999999877532  11122333332


Q ss_pred             h--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613           83 D--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMP  137 (190)
Q Consensus        83 ~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP  137 (190)
                      +        ..+++..            ...+..++...++..    .+..+|+||+|| .+||+++.+|+++  +||||
T Consensus        80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ll--llDEP  157 (237)
T TIGR00968        80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVL--LLDEP  157 (237)
T ss_pred             ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEcCC
Confidence            2        1222211            112234445555532    256799999999 6999999999999  99999


Q ss_pred             chhhhhcChHHHHHHHHcCC
Q 029613          138 LELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       138 ~~~ld~~~~~~~~~~~~~~~  157 (190)
                      +++||...++.+++.+++-.
T Consensus       158 ~~~LD~~~~~~~~~~l~~~~  177 (237)
T TIGR00968       158 FGALDAKVRKELRSWLRKLH  177 (237)
T ss_pred             cccCCHHHHHHHHHHHHHHH
Confidence            99999999999999998643

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.95  E-value=1.5e-28  Score=195.33  Aligned_cols=151  Identities=18%  Similarity=0.219  Sum_probs=112.6

Q ss_pred             ccccCcceeccCc-------cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC--c--cccc-
Q 029613            4 VGNSTNIFWQESP-------IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG--D--NLRH-   71 (190)
Q Consensus         4 ~l~~~~l~~~~~~-------~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g--~--~~~~-   71 (190)
                      |++++|++++|++       ..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.+++  .  ++.. 
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~~~g~~~~~~~~   79 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY-LPDSGRILVRHEGAWVDLAQA   79 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEEecCCCccchhhc
Confidence            4789999999963       46999999999999999999999999999999999987 67889999983  2  3211 


Q ss_pred             c------c-ccccCCChhhH--------HHHHHH------------HHHHHHHHHHcCcce-----eecccCccHHHH-H
Q 029613           72 G------L-NKNLGFSAEDR--------TENIRR------------VGEVAKLFADAGLIC-----IASLISPYRKDR-D  118 (190)
Q Consensus        72 ~------~-~~~i~~~~~~~--------~~~~~~------------~~~~~~~~~~~~~~~-----~~~~lS~g~kqr-~  118 (190)
                      .      . ...++|.+++.        .+++..            ...+..++...++..     .+..+|+||+|| .
T Consensus        80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~  159 (224)
T TIGR02324        80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN  159 (224)
T ss_pred             CHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHH
Confidence            0      0 11233333321        111110            012233444444422     367799999999 6


Q ss_pred             HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          119 ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       119 iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      +||+++.+|+++  +|||||++||+..++.+.+.+++-+
T Consensus       160 laral~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~~  196 (224)
T TIGR02324       160 IARGFIADYPIL--LLDEPTASLDAANRQVVVELIAEAK  196 (224)
T ss_pred             HHHHHhcCCCEE--EEcCCcccCCHHHHHHHHHHHHHHH
Confidence            999999999999  9999999999999999999988643

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.95  E-value=2e-28  Score=196.06  Aligned_cols=150  Identities=20%  Similarity=0.224  Sum_probs=111.1

Q ss_pred             cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      ++++|++++|+.  ..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++..    ..+..++
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY-VPENGRVLVDGHDLALADPAWLRRQVG   79 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCeehHhcCHHHHhhcEE
Confidence            467899999963  57999999999999999999999999999999999987 7889999999976532    1112233


Q ss_pred             CChhh-------HHHHHHH---------HHH------HHHHHHHc--Cc----ceeecccCccHHHH-HHHHHhCCCCCe
Q 029613           79 FSAED-------RTENIRR---------VGE------VAKLFADA--GL----ICIASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        79 ~~~~~-------~~~~~~~---------~~~------~~~~~~~~--~~----~~~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      |.+++       ..+++..         +..      +...+...  ++    ...+..||+||+|| .+||+++.+|++
T Consensus        80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l  159 (237)
T cd03252          80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI  159 (237)
T ss_pred             EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence            33322       1111110         000      01111111  11    12357799999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      +  +|||||++||+..++.+++.+++-.
T Consensus       160 l--llDEP~~~LD~~~~~~l~~~l~~~~  185 (237)
T cd03252         160 L--IFDEATSALDYESEHAIMRNMHDIC  185 (237)
T ss_pred             E--EEeCCcccCCHHHHHHHHHHHHHhc
Confidence            9  9999999999999999999998754

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.95  E-value=2.4e-28  Score=195.26  Aligned_cols=150  Identities=21%  Similarity=0.242  Sum_probs=111.7

Q ss_pred             cccCcceeccCcc--ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESPI--GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~~--~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      ++++|++++|++.  .+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..    ..+..++
T Consensus         1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY-DVDSGRILIDGHDVRDYTLASLRRQIG   79 (234)
T ss_pred             CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-cCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence            4688999999765  7999999999999999999999999999999999987 7889999999976532    1112233


Q ss_pred             CChhh-------HHHHHHH---------HH------HHHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613           79 FSAED-------RTENIRR---------VG------EVAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        79 ~~~~~-------~~~~~~~---------~~------~~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      |.+++       ..+++..         +.      .+...+...  ++.    ..+..+|+||+|| .+||+++.+|++
T Consensus        80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  159 (234)
T cd03251          80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI  159 (234)
T ss_pred             EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            32222       1121110         00      011122221  221    2356799999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      +  +|||||++||...++.+++.+++-.
T Consensus       160 l--lLDEP~~~LD~~~~~~l~~~l~~~~  185 (234)
T cd03251         160 L--ILDEATSALDTESERLVQAALERLM  185 (234)
T ss_pred             E--EEeCccccCCHHHHHHHHHHHHHhc
Confidence            9  9999999999999999999998753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.95  E-value=2.3e-28  Score=194.48  Aligned_cols=151  Identities=18%  Similarity=0.209  Sum_probs=113.5

Q ss_pred             cccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccc
Q 029613            3 TVGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNK   75 (190)
Q Consensus         3 ~~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~   75 (190)
                      .+++++|++++|++   ..+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..    ..+.
T Consensus        10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~   88 (226)
T cd03248          10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY-QPQGGQVLLDGKPISQYEHKYLHS   88 (226)
T ss_pred             ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCcEEEECCCchHHcCHHHHHh
Confidence            47899999999974   46999999999999999999999999999999999987 7889999999976532    1111


Q ss_pred             ccCCChhh-------HHHHHHH---------HH------HHHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCC
Q 029613           76 NLGFSAED-------RTENIRR---------VG------EVAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        76 ~i~~~~~~-------~~~~~~~---------~~------~~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~  126 (190)
                      .++|.+++       ..+++..         +.      .+..++..+  ++.    ..+..||+||+|| .+||+++.+
T Consensus        89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~  168 (226)
T cd03248          89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN  168 (226)
T ss_pred             hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence            22332222       1111110         00      011222222  332    2367799999999 699999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+++  +|||||++||+..++.+++.+++-
T Consensus       169 p~ll--llDEPt~~LD~~~~~~l~~~l~~~  196 (226)
T cd03248         169 PQVL--ILDEATSALDAESEQQVQQALYDW  196 (226)
T ss_pred             CCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999  999999999999999999999864

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2.4e-28  Score=195.26  Aligned_cols=148  Identities=19%  Similarity=0.253  Sum_probs=112.0

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccCCCh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLGFSA   81 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~~~~   81 (190)
                      |++++|++++|+...  .++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.++|.++...  ....++|.+
T Consensus         1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~   77 (232)
T PRK10771          1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFL-TPASGSLTLNGQDHTTTPPSRRPVSMLF   77 (232)
T ss_pred             CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCeecCcCChhhccEEEEe
Confidence            478999999998644  3999999999999999999999999999999977 78899999999765321  011122222


Q ss_pred             hh--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613           82 ED--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNM  136 (190)
Q Consensus        82 ~~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDE  136 (190)
                      ++        ..+++..            -..+..++...++.    ..+..+|+||+|| .+||+++.+|+++  +|||
T Consensus        78 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll--lLDE  155 (232)
T PRK10771         78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPIL--LLDE  155 (232)
T ss_pred             cccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE--EEeC
Confidence            21        1222211            01133344445543    2367899999999 6999999999999  9999


Q ss_pred             CchhhhhcChHHHHHHHHcC
Q 029613          137 PLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       137 P~~~ld~~~~~~~~~~~~~~  156 (190)
                      ||++||...++.+++.+++.
T Consensus       156 P~~gLD~~~~~~~~~~l~~~  175 (232)
T PRK10771        156 PFSALDPALRQEMLTLVSQV  175 (232)
T ss_pred             CcccCCHHHHHHHHHHHHHH
Confidence            99999999999999988764

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.5e-28  Score=197.46  Aligned_cols=153  Identities=20%  Similarity=0.170  Sum_probs=114.7

Q ss_pred             CcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hC---CCcEEEEcCccccc------
Q 029613            2 ATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SR---GKLSYILDGDNLRH------   71 (190)
Q Consensus         2 ~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~---~~g~i~~~g~~~~~------   71 (190)
                      .+|++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++. .+   .+|+|.++|.++..      
T Consensus         4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~   83 (253)
T PRK14261          4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV   83 (253)
T ss_pred             cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence            468999999999998899999999999999999999999999999999999763 12   37999999977532      


Q ss_pred             ccccccCCChhh-------HHHHHHH------------H-HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHH
Q 029613           72 GLNKNLGFSAED-------RTENIRR------------V-GEVAKLFADAGL--------ICIASLISPYRKDR-DACRA  122 (190)
Q Consensus        72 ~~~~~i~~~~~~-------~~~~~~~------------~-~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iara  122 (190)
                      ..+..++|.+++       ..+++..            . ..+...+...++        ...+..+|+||+|| .+||+
T Consensus        84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara  163 (253)
T PRK14261         84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIART  163 (253)
T ss_pred             hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHH
Confidence            112223333322       1111110            0 112222333332        12366799999999 69999


Q ss_pred             hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++.+|+++  +|||||++||...++.+.+.+++.
T Consensus       164 l~~~p~ll--lLDEP~~gLD~~~~~~l~~~l~~~  195 (253)
T PRK14261        164 LAVNPEVI--LMDEPCSALDPIATAKIEDLIEDL  195 (253)
T ss_pred             HhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            99999999  999999999999999999988864

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.95  E-value=1.3e-28  Score=213.98  Aligned_cols=150  Identities=21%  Similarity=0.260  Sum_probs=114.7

Q ss_pred             cccccCcceeccCc-----------cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613            3 TVGNSTNIFWQESP-----------IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH   71 (190)
Q Consensus         3 ~~l~~~~l~~~~~~-----------~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~   71 (190)
                      ++++++|+++.|..           +.+++++||++.+||+++|+|+||||||||+|+|+|++ +|.+|.|.++|.++..
T Consensus       279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~-~P~~G~i~~~g~~~~~  357 (539)
T COG1123         279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL-PPSSGSIIFDGQDLDL  357 (539)
T ss_pred             ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEEeCccccc
Confidence            56889999999973           46899999999999999999999999999999999987 7799999999976211


Q ss_pred             c------cccc---------cCCChhh-----HHHH---------HHHHHHHHHHHHHcCcc-----eeecccCccHHHH
Q 029613           72 G------LNKN---------LGFSAED-----RTEN---------IRRVGEVAKLFADAGLI-----CIASLISPYRKDR  117 (190)
Q Consensus        72 ~------~~~~---------i~~~~~~-----~~~~---------~~~~~~~~~~~~~~~~~-----~~~~~lS~g~kqr  117 (190)
                      .      .+..         .++.+..     ..+-         .++-..+..+++..++.     .++.++|||||||
T Consensus       358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQR  437 (539)
T COG1123         358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQR  437 (539)
T ss_pred             ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHH
Confidence            0      0000         1111110     0010         11112355566666654     3589999999999


Q ss_pred             -HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          118 -DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       118 -~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                       +|||||+.+|+++  ++|||+|+||.....++...+++
T Consensus       438 vaIARALa~~P~ll--i~DEp~SaLDvsvqa~VlnLl~~  474 (539)
T COG1123         438 VAIARALALEPKLL--ILDEPVSALDVSVQAQVLNLLKD  474 (539)
T ss_pred             HHHHHHHhcCCCEE--EecCCccccCHHHHHHHHHHHHH
Confidence             6999999999999  99999999999999988888776

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.95  E-value=2.5e-28  Score=193.60  Aligned_cols=150  Identities=19%  Similarity=0.200  Sum_probs=111.6

Q ss_pred             cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      ++++|++++|+.  +.+++++||++++|++++|+|+||||||||+++|+|.+ ++.+|.|.++|.++..    ..+..++
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~   81 (221)
T cd03244           3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV-ELSSGSILIDGVDISKIGLHDLRSRIS   81 (221)
T ss_pred             EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence            578999999964  47999999999999999999999999999999999977 7889999999976532    1122233


Q ss_pred             CChhh-------HHHHHHH-----HHHHHHHHHHcCc---------------ceeecccCccHHHH-HHHHHhCCCCCeE
Q 029613           79 FSAED-------RTENIRR-----VGEVAKLFADAGL---------------ICIASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        79 ~~~~~-------~~~~~~~-----~~~~~~~~~~~~~---------------~~~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      |.+++       ..+++..     ...+...+...++               ...+..+|+||+|| .+||+++.+|+++
T Consensus        82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll  161 (221)
T cd03244          82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL  161 (221)
T ss_pred             EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            33322       1111110     0011111111111               12467799999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                        +|||||++||+..++.+++.+++-+
T Consensus       162 --llDEP~~~LD~~~~~~l~~~l~~~~  186 (221)
T cd03244         162 --VLDEATASVDPETDALIQKTIREAF  186 (221)
T ss_pred             --EEeCccccCCHHHHHHHHHHHHHhc
Confidence              9999999999999999999998743

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.3e-28  Score=200.31  Aligned_cols=152  Identities=14%  Similarity=0.168  Sum_probs=116.4

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc-----cc
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH-----GL   73 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~-----~~   73 (190)
                      ++++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++.+    +.+|.|.++|.++..     ..
T Consensus        20 ~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~   99 (276)
T PRK14271         20 PAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEF   99 (276)
T ss_pred             cEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHH
Confidence            478999999999988999999999999999999999999999999999998732    368999999976532     11


Q ss_pred             ccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHhC
Q 029613           74 NKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGLI--------CIASLISPYRKDR-DACRAML  124 (190)
Q Consensus        74 ~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iarall  124 (190)
                      +..++|.+++       ..+++...             ..+...+...++.        ..+..+|+||+|| .+||+++
T Consensus       100 ~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~  179 (276)
T PRK14271        100 RRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLA  179 (276)
T ss_pred             hhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence            2233443332       22222210             0112233444442        2256799999999 6999999


Q ss_pred             CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+|+++  +|||||++||...++.+++.+++-
T Consensus       180 ~~p~ll--lLDEPt~~LD~~~~~~l~~~L~~~  209 (276)
T PRK14271        180 VNPEVL--LLDEPTSALDPTTTEKIEEFIRSL  209 (276)
T ss_pred             cCCCEE--EEcCCcccCCHHHHHHHHHHHHHH
Confidence            999999  999999999999999999988864

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4e-28  Score=196.07  Aligned_cols=152  Identities=18%  Similarity=0.147  Sum_probs=114.0

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hC---CCcEEEEcCccccc------c
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SR---GKLSYILDGDNLRH------G   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~---~~g~i~~~g~~~~~------~   72 (190)
                      +|++++|++++|+...+++++||++.+|++++|+|+||||||||+++|+|++. .+   .+|+|.++|.++..      .
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   83 (252)
T PRK14255          4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ   83 (252)
T ss_pred             ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence            47899999999998889999999999999999999999999999999999763 23   48999999976631      1


Q ss_pred             cccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHh
Q 029613           73 LNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAM  123 (190)
Q Consensus        73 ~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iaral  123 (190)
                      ....++|.+++       ..+++...             ..+...+...++        ...+..+|+||+|| .+||++
T Consensus        84 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral  163 (252)
T PRK14255         84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL  163 (252)
T ss_pred             hcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHH
Confidence            12223333322       22222110             011122233322        12367799999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||...++.+.+.+++-
T Consensus       164 ~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~  194 (252)
T PRK14255        164 AVKPDVI--LLDEPTSALDPISSTQIENMLLEL  194 (252)
T ss_pred             hcCCCEE--EEcCCCccCCHHHHHHHHHHHHHH
Confidence            9999999  999999999999999999888764

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4e-28  Score=198.70  Aligned_cols=151  Identities=18%  Similarity=0.117  Sum_probs=114.5

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-C---CCcEEEEcCccccc------cc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-R---GKLSYILDGDNLRH------GL   73 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~---~~g~i~~~g~~~~~------~~   73 (190)
                      ||+++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++.. +   .+|.|.++|.++..      ..
T Consensus        20 ~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~   99 (274)
T PRK14265         20 VFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKL   99 (274)
T ss_pred             eEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHH
Confidence            78999999999988899999999999999999999999999999999998732 2   58999999977531      11


Q ss_pred             ccccCCChhh-------HHHHHHHH-----------HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHhCCC
Q 029613           74 NKNLGFSAED-------RTENIRRV-----------GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        74 ~~~i~~~~~~-------~~~~~~~~-----------~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iarall~~  126 (190)
                      +..++|.+++       ..+++...           ..+...+...++        ...+..+|+||+|| .+||+++.+
T Consensus       100 ~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~  179 (274)
T PRK14265        100 RRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMK  179 (274)
T ss_pred             hhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhC
Confidence            2233333332       22222110           011122233332        12367799999999 699999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+++  +|||||++||...++.+++.+++-
T Consensus       180 p~ll--lLDEPt~~LD~~~~~~l~~~L~~~  207 (274)
T PRK14265        180 PDVL--LMDEPCSALDPISTRQVEELCLEL  207 (274)
T ss_pred             CCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999  999999999999999999999865

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.95  E-value=8e-28  Score=180.36  Aligned_cols=149  Identities=17%  Similarity=0.212  Sum_probs=112.5

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      .++++++.+.-++.++|+++||++++||.++|+||||||||||+|+++.++ ++++|.++|.|+++..    ..+..++|
T Consensus         3 lle~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li-sp~~G~l~f~Ge~vs~~~pea~Rq~VsY   81 (223)
T COG4619           3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDVSTLKPEAYRQQVSY   81 (223)
T ss_pred             chHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc-CCCCceEEEcCccccccChHHHHHHHHH
Confidence            467888888888899999999999999999999999999999999999977 8999999999998753    12222333


Q ss_pred             Chhh-------HHHHHH--------HH--HHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613           80 SAED-------RTENIR--------RV--GEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNM  136 (190)
Q Consensus        80 ~~~~-------~~~~~~--------~~--~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDE  136 (190)
                      ..+.       .+.++-        +.  .....++.++++-     ..+..+|||++|| +++|.|.--|+++  +|||
T Consensus        82 ~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~IL--LLDE  159 (223)
T COG4619          82 CAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKIL--LLDE  159 (223)
T ss_pred             HHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceE--EecC
Confidence            2221       111100        00  0122233344332     2377899999999 6999999999999  9999


Q ss_pred             CchhhhhcChHHHHHHHHc
Q 029613          137 PLELCEARDPKGLYKLARA  155 (190)
Q Consensus       137 P~~~ld~~~~~~~~~~~~~  155 (190)
                      |||+||+..++.+-+++-+
T Consensus       160 ~TsALD~~nkr~ie~mi~~  178 (223)
T COG4619         160 ITSALDESNKRNIEEMIHR  178 (223)
T ss_pred             chhhcChhhHHHHHHHHHH
Confidence            9999999998877776654

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.7e-28  Score=215.93  Aligned_cols=151  Identities=19%  Similarity=0.204  Sum_probs=117.8

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----cccccc
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKNL   77 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~i   77 (190)
                      +|++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..     ..+..+
T Consensus         3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~~i   81 (501)
T PRK11288          3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY-QPDAGSILIDGQEMRFASTTAALAAGV   81 (501)
T ss_pred             ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECCCCCHHHHHhCCE
Confidence            4789999999998888999999999999999999999999999999999977 7889999999876531     112223


Q ss_pred             CCChhh--------HHHHHHH---------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613           78 GFSAED--------RTENIRR---------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        78 ~~~~~~--------~~~~~~~---------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      +|.+++        ..+++..               ...+..++...++.    ..+..||+||+|| .+||+++.+|++
T Consensus        82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l  161 (501)
T PRK11288         82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARV  161 (501)
T ss_pred             EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence            333322        1111110               11233445555553    2367899999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +  +|||||++||+..++.+++.+++.
T Consensus       162 l--lLDEPt~~LD~~~~~~l~~~l~~~  186 (501)
T PRK11288        162 I--AFDEPTSSLSAREIEQLFRVIREL  186 (501)
T ss_pred             E--EEcCCCCCCCHHHHHHHHHHHHHH
Confidence            9  999999999999999999888764

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.95  E-value=2.4e-28  Score=191.35  Aligned_cols=143  Identities=16%  Similarity=0.128  Sum_probs=110.9

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH-hhCCCcEEEEcCcccccc-----cccccC
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL-YSRGKLSYILDGDNLRHG-----LNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l-~~~~~g~i~~~g~~~~~~-----~~~~i~   78 (190)
                      ++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|.+ .++.+|.|.++|.++...     .+..++
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (200)
T cd03217           1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF   80 (200)
T ss_pred             CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE
Confidence            46889999998888999999999999999999999999999999999974 267899999999876431     112245


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           79 FSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |.+++..-. .. ..+...+     ......+|+||+|| .+||+++.+|+++  +|||||++||...+..+++.+++.
T Consensus        81 ~v~q~~~~~-~~-~~~~~~l-----~~~~~~LS~G~~qrv~laral~~~p~il--llDEPt~~LD~~~~~~l~~~L~~~  150 (200)
T cd03217          81 LAFQYPPEI-PG-VKNADFL-----RYVNEGFSGGEKKRNEILQLLLLEPDLA--ILDEPDSGLDIDALRLVAEVINKL  150 (200)
T ss_pred             EeecChhhc-cC-ccHHHHH-----hhccccCCHHHHHHHHHHHHHhcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence            555432110 00 0011111     11235799999999 6999999999999  999999999999999999988864

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.8e-28  Score=197.96  Aligned_cols=151  Identities=21%  Similarity=0.141  Sum_probs=115.1

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------cc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------GL   73 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~~   73 (190)
                      +++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++..    +.+|.|.++|.++..      ..
T Consensus        25 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~  104 (272)
T PRK14236         25 ALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAEL  104 (272)
T ss_pred             EEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHH
Confidence            68999999999888899999999999999999999999999999999998742    478999999977532      11


Q ss_pred             ccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHhC
Q 029613           74 NKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGLI--------CIASLISPYRKDR-DACRAML  124 (190)
Q Consensus        74 ~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iarall  124 (190)
                      +..++|.+++       ..+++...             ..+...+...++.        ..+..+|+||+|| .+||+++
T Consensus       105 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~  184 (272)
T PRK14236        105 RRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIA  184 (272)
T ss_pred             hccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence            2233333322       22222110             1122233333331        2367799999999 6999999


Q ss_pred             CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+|+++  +|||||++||+..+..+++.+++.
T Consensus       185 ~~p~ll--lLDEPt~gLD~~~~~~l~~~L~~~  214 (272)
T PRK14236        185 IEPEVL--LLDEPTSALDPISTLKIEELITEL  214 (272)
T ss_pred             CCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            999999  999999999999999999998865

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.95  E-value=4e-28  Score=194.48  Aligned_cols=153  Identities=24%  Similarity=0.288  Sum_probs=112.1

Q ss_pred             cccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            5 GNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         5 l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      ++++|+++.|++   ..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|+|.++|.++..    ..+..+
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i   79 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY-DPTSGEILLDGVDIRDLNLRWLRSQI   79 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC-CCCCCEEEECCEehhhcCHHHHHhhE
Confidence            468899999964   46999999999999999999999999999999999987 7889999999976532    111223


Q ss_pred             CCChhh-------HHHHHHH---------HHH------HHHHHHHc--Cc----ceeecccCccHHHH-HHHHHhCCCCC
Q 029613           78 GFSAED-------RTENIRR---------VGE------VAKLFADA--GL----ICIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        78 ~~~~~~-------~~~~~~~---------~~~------~~~~~~~~--~~----~~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      +|.+++       ..+++..         ...      +...+...  ++    ...+..+|+||+|| .+||+++.+|+
T Consensus        80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~  159 (238)
T cd03249          80 GLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK  159 (238)
T ss_pred             EEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence            333332       1111110         000      01111111  11    12256799999999 59999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcCCCCCc
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAGKIKGL  161 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~  161 (190)
                      ++  +|||||++||+..++.+++.+++.. +|.
T Consensus       160 ll--llDEP~~gLD~~~~~~l~~~l~~~~-~g~  189 (238)
T cd03249         160 IL--LLDEATSALDAESEKLVQEALDRAM-KGR  189 (238)
T ss_pred             EE--EEeCccccCCHHHHHHHHHHHHHhc-CCC
Confidence            99  9999999999999999999998765 453

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.95  E-value=2.6e-28  Score=212.19  Aligned_cols=152  Identities=20%  Similarity=0.215  Sum_probs=117.2

Q ss_pred             CcccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC---CCcEEEEcCcccccc--
Q 029613            2 ATVGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR---GKLSYILDGDNLRHG--   72 (190)
Q Consensus         2 ~~~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~---~~g~i~~~g~~~~~~--   72 (190)
                      .++|+++|++++|..    +.+++|+||++.+||+++|+|+|||||||++++|.|+++..   .+|.|.|+|.++...  
T Consensus         3 ~~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~   82 (539)
T COG1123           3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE   82 (539)
T ss_pred             CceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence            358999999999853    36999999999999999999999999999999999988433   279999999865321  


Q ss_pred             ------cccccCCChhh--------------HHHHH---------HHHHHHHHHHHHcCcc------eeecccCccHHHH
Q 029613           73 ------LNKNLGFSAED--------------RTENI---------RRVGEVAKLFADAGLI------CIASLISPYRKDR  117 (190)
Q Consensus        73 ------~~~~i~~~~~~--------------~~~~~---------~~~~~~~~~~~~~~~~------~~~~~lS~g~kqr  117 (190)
                            ....+++.+|+              ..+.+         .......+++...++.      .++..||||||||
T Consensus        83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR  162 (539)
T COG1123          83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR  162 (539)
T ss_pred             HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH
Confidence                  11223344333              11110         0112344555555552      3788999999999


Q ss_pred             H-HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          118 D-ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       118 ~-iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      . ||+|++.+|+++  ++||||++||...+.++++.+++
T Consensus       163 v~iAmALa~~P~LL--IaDEPTTaLDvt~q~qIL~llk~  199 (539)
T COG1123         163 VMIAMALALKPKLL--IADEPTTALDVTTQAQILDLLKD  199 (539)
T ss_pred             HHHHHHHhCCCCEE--EECCCccccCHHHHHHHHHHHHH
Confidence            5 999999999999  99999999999999999999987

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.95  E-value=2.4e-28  Score=222.15  Aligned_cols=149  Identities=21%  Similarity=0.155  Sum_probs=116.6

Q ss_pred             cccCcceeccC--ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQES--PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~--~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      ++++|++++|+  +.++++++||++++|+.++|+|+||||||||+|+|+|++ +|.+|.|.+||.++..    .++..++
T Consensus       452 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~  530 (686)
T TIGR03797       452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE-TPESGSVFYDGQDLAGLDVQAVRRQLG  530 (686)
T ss_pred             EEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEEcCcCCHHHHHhccE
Confidence            68899999995  357999999999999999999999999999999999977 8899999999988753    3444556


Q ss_pred             CChhh-------HHHHHHHH-----HHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCCCCeE
Q 029613           79 FSAED-------RTENIRRV-----GEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        79 ~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      +.+|+       ..+++...     .++...++..++.               +-...|||||||| ++|||++++|+++
T Consensus       531 ~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iL  610 (686)
T TIGR03797       531 VVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRIL  610 (686)
T ss_pred             EEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            65554       23333210     1122222222221               1245699999999 7999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +||||||+||+...+.+++.+++.
T Consensus       611 --iLDEpTS~LD~~te~~i~~~L~~~  634 (686)
T TIGR03797       611 --LFDEATSALDNRTQAIVSESLERL  634 (686)
T ss_pred             --EEeCCccCCCHHHHHHHHHHHHHh
Confidence              999999999999999999999864

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.2e-28  Score=195.90  Aligned_cols=151  Identities=19%  Similarity=0.134  Sum_probs=114.7

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh--C--CCcEEEEcCccccc------cc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS--R--GKLSYILDGDNLRH------GL   73 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~--~--~~g~i~~~g~~~~~------~~   73 (190)
                      +++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++.+  +  .+|.|.++|.++..      ..
T Consensus         7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   86 (259)
T PRK14260          7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL   86 (259)
T ss_pred             eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence            68899999999888899999999999999999999999999999999998732  2  47999999976531      11


Q ss_pred             ccccCCChhh-------HHHHHHH------------H-HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHhC
Q 029613           74 NKNLGFSAED-------RTENIRR------------V-GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAML  124 (190)
Q Consensus        74 ~~~i~~~~~~-------~~~~~~~------------~-~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iarall  124 (190)
                      +..++|.+++       ..+++..            . ..+...+...++        ...+..+|+||+|| .+||+++
T Consensus        87 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~  166 (259)
T PRK14260         87 RRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA  166 (259)
T ss_pred             hhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence            2223333322       2222211            0 112223333333        12367899999999 6999999


Q ss_pred             CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+|+++  +|||||++||...++.+++.+++-
T Consensus       167 ~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~  196 (259)
T PRK14260        167 IKPKVL--LMDEPCSALDPIATMKVEELIHSL  196 (259)
T ss_pred             cCCCEE--EEcCCCccCCHHHHHHHHHHHHHH
Confidence            999999  999999999999999999999864

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.4e-28  Score=200.20  Aligned_cols=151  Identities=19%  Similarity=0.176  Sum_probs=114.4

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--h--CCCcEEEEcCccccc------cc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--S--RGKLSYILDGDNLRH------GL   73 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~--~~~g~i~~~g~~~~~------~~   73 (190)
                      +++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++.  +  +.+|.|.++|.++..      ..
T Consensus        39 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~  118 (286)
T PRK14275         39 HVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLL  118 (286)
T ss_pred             EEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHh
Confidence            6889999999988889999999999999999999999999999999999752  2  389999999976532      11


Q ss_pred             ccccCCChhh-------HHHHHHH------------H-HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHhC
Q 029613           74 NKNLGFSAED-------RTENIRR------------V-GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAML  124 (190)
Q Consensus        74 ~~~i~~~~~~-------~~~~~~~------------~-~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iarall  124 (190)
                      +..++|.+++       ..+++..            . ..+...+...++        ...+..||+||+|| .+||+++
T Consensus       119 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~  198 (286)
T PRK14275        119 RKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLA  198 (286)
T ss_pred             hhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHh
Confidence            2233443332       1122211            0 112223333332        22367799999999 6999999


Q ss_pred             CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+|+++  +|||||++||...++.+++.+++-
T Consensus       199 ~~p~ll--lLDEPt~gLD~~~~~~l~~~L~~~  228 (286)
T PRK14275        199 VEPEIL--LLDEPTSALDPKATAKIEDLIQEL  228 (286)
T ss_pred             cCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence            999999  999999999999999999998864

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.95  E-value=2.4e-28  Score=191.98  Aligned_cols=150  Identities=17%  Similarity=0.163  Sum_probs=114.2

Q ss_pred             ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      .++++|++++|+.  ..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..    ..+..+
T Consensus         6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i   84 (207)
T cd03369           6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL-EAEEGKIEIDGIDISTIPLEDLRSSL   84 (207)
T ss_pred             eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCeEEECCEEhHHCCHHHHHhhE
Confidence            5789999999975  47999999999999999999999999999999999977 7889999999976532    112234


Q ss_pred             CCChhh-------HHHHHHHHH--HHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChH
Q 029613           78 GFSAED-------RTENIRRVG--EVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPK  147 (190)
Q Consensus        78 ~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~  147 (190)
                      +|.+++       ..+++....  ....+.....+...+..+|+|++|| .+||+++.+|+++  +|||||++||+..++
T Consensus        85 ~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~ll--llDEP~~~LD~~~~~  162 (207)
T cd03369          85 TIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVL--VLDEATASIDYATDA  162 (207)
T ss_pred             EEEecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEE--EEeCCcccCCHHHHH
Confidence            443332       222221110  0011111112334467899999999 6999999999999  999999999999999


Q ss_pred             HHHHHHHcC
Q 029613          148 GLYKLARAG  156 (190)
Q Consensus       148 ~~~~~~~~~  156 (190)
                      .+++.+++-
T Consensus       163 ~l~~~l~~~  171 (207)
T cd03369         163 LIQKTIREE  171 (207)
T ss_pred             HHHHHHHHh
Confidence            999999874

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=7.2e-28  Score=194.59  Aligned_cols=150  Identities=21%  Similarity=0.132  Sum_probs=114.2

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--h--CCCcEEEEcCccccc------ccc
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--S--RGKLSYILDGDNLRH------GLN   74 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~--~~~g~i~~~g~~~~~------~~~   74 (190)
                      -+++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++.  +  +.+|.|.++|.++..      ..+
T Consensus         6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~   85 (251)
T PRK14244          6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR   85 (251)
T ss_pred             EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence            468899999988889999999999999999999999999999999999763  1  368999999976532      112


Q ss_pred             cccCCChhh-------HHHHHHHH--------------HHHHHHHHHcCcce--------eecccCccHHHH-HHHHHhC
Q 029613           75 KNLGFSAED-------RTENIRRV--------------GEVAKLFADAGLIC--------IASLISPYRKDR-DACRAML  124 (190)
Q Consensus        75 ~~i~~~~~~-------~~~~~~~~--------------~~~~~~~~~~~~~~--------~~~~lS~g~kqr-~iarall  124 (190)
                      ..++|.+++       ..+++...              ..+..++...++..        .+..+|+||+|| .+||+++
T Consensus        86 ~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~  165 (251)
T PRK14244         86 AKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA  165 (251)
T ss_pred             hhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence            223333322       12222110              11233445555421        356799999999 6999999


Q ss_pred             CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+|+++  +|||||++||...++.+++.+++.
T Consensus       166 ~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~  195 (251)
T PRK14244        166 VKPTML--LMDEPCSALDPVATNVIENLIQEL  195 (251)
T ss_pred             cCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence            999999  999999999999999999999865

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.9e-28  Score=197.84  Aligned_cols=151  Identities=21%  Similarity=0.168  Sum_probs=114.1

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--h--CCCcEEEEcCccccc------cc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--S--RGKLSYILDGDNLRH------GL   73 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~--~~~g~i~~~g~~~~~------~~   73 (190)
                      |++++|+++.|++..+++++||++.+|++++|+|+||||||||+++|+|++.  +  +.+|.|.++|.++..      ..
T Consensus        24 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~  103 (271)
T PRK14238         24 VFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEEL  103 (271)
T ss_pred             EEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHH
Confidence            7899999999988889999999999999999999999999999999999873  1  578999999976531      11


Q ss_pred             ccccCCChhh-------HHHHHHHH------------H-HHHHHHHHcC----c----ceeecccCccHHHH-HHHHHhC
Q 029613           74 NKNLGFSAED-------RTENIRRV------------G-EVAKLFADAG----L----ICIASLISPYRKDR-DACRAML  124 (190)
Q Consensus        74 ~~~i~~~~~~-------~~~~~~~~------------~-~~~~~~~~~~----~----~~~~~~lS~g~kqr-~iarall  124 (190)
                      ...++|.+++       ..+++...            . .+...+...+    +    ...+..+|+||+|| .+||+++
T Consensus       104 ~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~  183 (271)
T PRK14238        104 RTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLA  183 (271)
T ss_pred             hhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHH
Confidence            2223333332       22222210            0 0111222221    1    12367799999999 6999999


Q ss_pred             CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+|+++  +|||||++||+..++.+++.+++.
T Consensus       184 ~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~  213 (271)
T PRK14238        184 IEPDVI--LMDEPTSALDPISTLKVEELVQEL  213 (271)
T ss_pred             cCCCEE--EEeCCCCcCCHHHHHHHHHHHHHH
Confidence            999999  999999999999999999988764

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.95  E-value=5.9e-28  Score=190.70  Aligned_cols=145  Identities=19%  Similarity=0.151  Sum_probs=109.9

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--------ccccc
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--------GLNKN   76 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--------~~~~~   76 (190)
                      +.. +|+|+|+++.+  ++||++++ ++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..        .....
T Consensus         2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   76 (214)
T cd03297           2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE-KPDGGTIVLNGTVLFDSRKKINLPPQQRK   76 (214)
T ss_pred             cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEecccccchhhhhhHhhc
Confidence            344 89999998766  99999999 999999999999999999999987 7889999999876531        01112


Q ss_pred             cCCChhh--------HHHHHHH----------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613           77 LGFSAED--------RTENIRR----------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVF  133 (190)
Q Consensus        77 i~~~~~~--------~~~~~~~----------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vl  133 (190)
                      ++|.+++        ..+++..          -..+..++...++..    .+..+|+||+|| .+||+++.+|+++  +
T Consensus        77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll--l  154 (214)
T cd03297          77 IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELL--L  154 (214)
T ss_pred             EEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEE--E
Confidence            3332222        1222211          112334455555532    367899999999 6999999999999  9


Q ss_pred             eeCCchhhhhcChHHHHHHHHcC
Q 029613          134 MNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       134 lDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |||||++||...++.+++.+++.
T Consensus       155 lDEPt~~LD~~~~~~l~~~l~~~  177 (214)
T cd03297         155 LDEPFSALDRALRLQLLPELKQI  177 (214)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999988764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=7.4e-28  Score=199.89  Aligned_cols=152  Identities=22%  Similarity=0.152  Sum_probs=115.5

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------c
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------G   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~   72 (190)
                      ++|.++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++.+    +.+|.|.++|.++..      .
T Consensus        44 ~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~  123 (305)
T PRK14264         44 AKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE  123 (305)
T ss_pred             ceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence            478999999999988899999999999999999999999999999999998732    578999999976532      1


Q ss_pred             cccccCCChhh-------HHHHHHH-------------------------HHHHHHHHHHcCc--------ceeecccCc
Q 029613           73 LNKNLGFSAED-------RTENIRR-------------------------VGEVAKLFADAGL--------ICIASLISP  112 (190)
Q Consensus        73 ~~~~i~~~~~~-------~~~~~~~-------------------------~~~~~~~~~~~~~--------~~~~~~lS~  112 (190)
                      .+..++|.+++       ..+++..                         -..+..++...++        ...+..+|+
T Consensus       124 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg  203 (305)
T PRK14264        124 LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSG  203 (305)
T ss_pred             HhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCH
Confidence            12233443332       1111110                         0112222333332        123677999


Q ss_pred             cHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          113 YRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       113 g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ||+|| .+||+++.+|+++  +|||||++||...++.+.+.+++.
T Consensus       204 Gq~qrv~LAraL~~~p~lL--LLDEPtsgLD~~~~~~l~~~L~~~  246 (305)
T PRK14264        204 GQQQRLCIARCLAVDPEVI--LMDEPASALDPIATSKIEDLIEEL  246 (305)
T ss_pred             HHHHHHHHHHHHhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            99999 6999999999999  999999999999999999999865

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.95  E-value=4.8e-28  Score=195.53  Aligned_cols=156  Identities=16%  Similarity=0.086  Sum_probs=115.6

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH-hhCCCcEEEEcCcccccc----ccc-c
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL-YSRGKLSYILDGDNLRHG----LNK-N   76 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l-~~~~~g~i~~~g~~~~~~----~~~-~   76 (190)
                      +|++++|+++.|++..+++++||++++|++++|+|+||||||||+++|+|+. .++.+|.|.++|.++...    ... .
T Consensus         6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   85 (252)
T CHL00131          6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG   85 (252)
T ss_pred             ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence            3789999999998888999999999999999999999999999999999963 267899999998765321    000 1


Q ss_pred             cCCChhh--------HHHHHHH-------------------HHHHHHHHHHcCcc-----eeec-ccCccHHHH-HHHHH
Q 029613           77 LGFSAED--------RTENIRR-------------------VGEVAKLFADAGLI-----CIAS-LISPYRKDR-DACRA  122 (190)
Q Consensus        77 i~~~~~~--------~~~~~~~-------------------~~~~~~~~~~~~~~-----~~~~-~lS~g~kqr-~iara  122 (190)
                      +++.+++        ..+++..                   ...+..++...++.     ..+. .+|+||+|| .+||+
T Consensus        86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a  165 (252)
T CHL00131         86 IFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQM  165 (252)
T ss_pred             EEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHH
Confidence            2222111        1111110                   01223344444443     1244 499999999 69999


Q ss_pred             hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      ++.+|+++  +|||||++||...++.+++.+++....|
T Consensus       166 l~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~~~~g  201 (252)
T CHL00131        166 ALLDSELA--ILDETDSGLDIDALKIIAEGINKLMTSE  201 (252)
T ss_pred             HHcCCCEE--EEcCCcccCCHHHHHHHHHHHHHHHhCC
Confidence            99999999  9999999999999999999988654334

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=7.5e-28  Score=207.13  Aligned_cols=153  Identities=20%  Similarity=0.285  Sum_probs=121.6

Q ss_pred             cccCcceeccCccc-cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            5 GNSTNIFWQESPIG-RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~~~~-~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      |+++|++++|+.++ +|+++||+|++||-++|+|+|||||||++|+|.+.+ + .+|.|++||.++..    .+++.+++
T Consensus       352 I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~-d-~sG~I~IdG~dik~~~~~SlR~~Ig~  429 (591)
T KOG0057|consen  352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF-D-YSGSILIDGQDIKEVSLESLRQSIGV  429 (591)
T ss_pred             EEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh-c-cCCcEEECCeeHhhhChHHhhhheeE
Confidence            78999999999776 999999999999999999999999999999999977 4 89999999999864    56777888


Q ss_pred             ChhhH-------HHHHH---------HHH------HHHHHHHHc--Cc----ceeecccCccHHHH-HHHHHhCCCCCeE
Q 029613           80 SAEDR-------TENIR---------RVG------EVAKLFADA--GL----ICIASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        80 ~~~~~-------~~~~~---------~~~------~~~~~~~~~--~~----~~~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      +||+-       ..++.         .+-      .+.+.+...  |.    -+....+||||||| .+||+++++|+++
T Consensus       430 VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il  509 (591)
T KOG0057|consen  430 VPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPIL  509 (591)
T ss_pred             eCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeE
Confidence            88871       12211         111      112222222  21    12356799999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                        ++|||||.||......+.+.+++ ..++.|
T Consensus       510 --~~DEaTS~LD~~TE~~i~~~i~~-~~~~rT  538 (591)
T KOG0057|consen  510 --LLDEATSALDSETEREILDMIMD-VMSGRT  538 (591)
T ss_pred             --EecCcccccchhhHHHHHHHHHH-hcCCCe
Confidence              99999999999999999999987 334444

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.95  E-value=7.2e-28  Score=192.95  Aligned_cols=148  Identities=17%  Similarity=0.230  Sum_probs=113.3

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccCCChh
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLGFSAE   82 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~~~~~   82 (190)
                      |+++|++++|++. +++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.++++|.++...  .+..+++.++
T Consensus         1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~-~p~~G~v~i~g~~~~~~~~~~~~i~~~~q   78 (235)
T cd03299           1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI-KPDSGKILLNGKDITNLPPEKRDISYVPQ   78 (235)
T ss_pred             CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEcCcCChhHcCEEEEee
Confidence            4688999999764 899999999999999999999999999999999977 78899999999765321  1112222222


Q ss_pred             h--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613           83 D--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMP  137 (190)
Q Consensus        83 ~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP  137 (190)
                      +        ..+++..            -.++..++...++..    .+..+|+||+|| .+||+++.+|+++  +||||
T Consensus        79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll--llDEP  156 (235)
T cd03299          79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKIL--LLDEP  156 (235)
T ss_pred             cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEE--EECCC
Confidence            1        1222211            012233444555532    367799999999 6999999999999  99999


Q ss_pred             chhhhhcChHHHHHHHHcC
Q 029613          138 LELCEARDPKGLYKLARAG  156 (190)
Q Consensus       138 ~~~ld~~~~~~~~~~~~~~  156 (190)
                      |++||...++.+++.+++.
T Consensus       157 t~gLD~~~~~~l~~~l~~~  175 (235)
T cd03299         157 FSALDVRTKEKLREELKKI  175 (235)
T ss_pred             cccCCHHHHHHHHHHHHHH
Confidence            9999999999999998864

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.95  E-value=8.6e-28  Score=192.24  Aligned_cols=150  Identities=22%  Similarity=0.223  Sum_probs=110.5

Q ss_pred             cccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            5 GNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      ++++|++++|+ +..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..    ..+..++|
T Consensus         1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~   79 (236)
T cd03253           1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY-DVSSGSILIDGQDIREVTLDSLRRAIGV   79 (236)
T ss_pred             CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence            46789999995 567999999999999999999999999999999999977 7889999999976532    11112233


Q ss_pred             Chhh-------HHHHHHH---------HHH------HHHHHHHc--Cc----ceeecccCccHHHH-HHHHHhCCCCCeE
Q 029613           80 SAED-------RTENIRR---------VGE------VAKLFADA--GL----ICIASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        80 ~~~~-------~~~~~~~---------~~~------~~~~~~~~--~~----~~~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      .+++       ..+++..         +..      +...+...  ++    ...+..||+||+|| .+||+++.+|+++
T Consensus        80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll  159 (236)
T cd03253          80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL  159 (236)
T ss_pred             ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            3222       1121110         000      01111111  11    11246799999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                        +|||||++||+..++.+++.+++..
T Consensus       160 --llDEP~~~LD~~~~~~l~~~l~~~~  184 (236)
T cd03253         160 --LLDEATSALDTHTEREIQAALRDVS  184 (236)
T ss_pred             --EEeCCcccCCHHHHHHHHHHHHHhc
Confidence              9999999999999999999998654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.95  E-value=3.7e-28  Score=221.59  Aligned_cols=148  Identities=21%  Similarity=0.205  Sum_probs=115.6

Q ss_pred             cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      ++++|++++|++  .++++|+||++++|+.++|+|+||||||||+++|+|++ +|.+|.|.+||.++..    .++..++
T Consensus       478 I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~  556 (710)
T TIGR03796       478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY-QPWSGEILFDGIPREEIPREVLANSVA  556 (710)
T ss_pred             EEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEeHHHCCHHHHHhhee
Confidence            688999999974  57999999999999999999999999999999999977 8899999999988753    2444556


Q ss_pred             CChhh-------HHHHHHHH------HHHH---------HHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613           79 FSAED-------RTENIRRV------GEVA---------KLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        79 ~~~~~-------~~~~~~~~------~~~~---------~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      |.+|+       .++++...      .++.         +.+...  |+.    +-...|||||||| ++||+++++|++
T Consensus       557 ~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~i  636 (710)
T TIGR03796       557 MVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSI  636 (710)
T ss_pred             EEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence            65554       22332110      1111         111111  221    1245699999999 799999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +  +||||||+||+...+.+++.+++
T Consensus       637 l--iLDEptS~LD~~te~~i~~~l~~  660 (710)
T TIGR03796       637 L--ILDEATSALDPETEKIIDDNLRR  660 (710)
T ss_pred             E--EEECccccCCHHHHHHHHHHHHh
Confidence            9  99999999999999999999986

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1e-27  Score=185.61  Aligned_cols=149  Identities=21%  Similarity=0.212  Sum_probs=110.2

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----------
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----------   72 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----------   72 (190)
                      ||+.+|++++..++.+++++||++++||+.+|+||||||||||+|.|+|.+ .|++|.+.++|.++...           
T Consensus         1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel-~p~~G~v~~~g~~l~~~~~~~lA~~raV   79 (259)
T COG4559           1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL-SPDSGEVTLNGVPLNSWPPEELARHRAV   79 (259)
T ss_pred             CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc-CCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence            589999999999999999999999999999999999999999999999988 78999999999876431           


Q ss_pred             cc----cccCCChhhHHHHH----------HHHHH-HHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCC-----
Q 029613           73 LN----KNLGFSAEDRTENI----------RRVGE-VAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDS-----  127 (190)
Q Consensus        73 ~~----~~i~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~-----  127 (190)
                      +.    -.+.|..++..+.-          ..-.+ ....+...++.    .....||||++|| .+||.|.+-+     
T Consensus        80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~  159 (259)
T COG4559          80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPS  159 (259)
T ss_pred             cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCC
Confidence            00    01223333321100          00011 12223333332    2366799999999 5999987633     


Q ss_pred             -CeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          128 -NFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       128 -~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                       .++  +||||||+||..-....+..+++
T Consensus       160 ~r~L--~LDEPtsaLDi~HQ~~tl~laR~  186 (259)
T COG4559         160 GRWL--FLDEPTSALDIAHQHHTLRLARQ  186 (259)
T ss_pred             CceE--EecCCccccchHHHHHHHHHHHH
Confidence             367  99999999999998888877776

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.95  E-value=6.1e-28  Score=189.32  Aligned_cols=148  Identities=21%  Similarity=0.163  Sum_probs=104.0

Q ss_pred             cccCcceeccCcc-----ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---c----
Q 029613            5 GNSTNIFWQESPI-----GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---G----   72 (190)
Q Consensus         5 l~~~~l~~~~~~~-----~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~----   72 (190)
                      ++++|++++|++.     .+++++||++++|++++|+||||||||||+++|+|++ ++.+|+|.++|. +..   .    
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~-~~~~G~i~~~g~-i~~~~q~~~l~   78 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL-EKLSGSVSVPGS-IAYVSQEPWIQ   78 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCCeEEEcCE-EEEEecCchhc
Confidence            4689999999764     6999999999999999999999999999999999977 788999999872 110   0    


Q ss_pred             ---cccccCCChhhHHHHHHHHH---HHHHHHHHc--Cc----ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613           73 ---LNKNLGFSAEDRTENIRRVG---EVAKLFADA--GL----ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE  139 (190)
Q Consensus        73 ---~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~--~~----~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~  139 (190)
                         ...++.+......+......   .+...+...  +.    ...+..+|+|++|| .+||+++.+|+++  +|||||+
T Consensus        79 ~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ll--llDEP~~  156 (204)
T cd03250          79 NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIY--LLDDPLS  156 (204)
T ss_pred             cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEE--EEeCccc
Confidence               00111111000000011100   011112111  11    12356799999999 6999999999999  9999999


Q ss_pred             hhhhcChHHHHHH-HHcC
Q 029613          140 LCEARDPKGLYKL-ARAG  156 (190)
Q Consensus       140 ~ld~~~~~~~~~~-~~~~  156 (190)
                      +||+...+.+++. +++.
T Consensus       157 ~LD~~~~~~l~~~ll~~~  174 (204)
T cd03250         157 AVDAHVGRHIFENCILGL  174 (204)
T ss_pred             cCCHHHHHHHHHHHHHHh
Confidence            9999999988874 4543

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.2e-27  Score=194.40  Aligned_cols=150  Identities=19%  Similarity=0.110  Sum_probs=113.4

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC-----CcEEEEcCccccc------c
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG-----KLSYILDGDNLRH------G   72 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~-----~g~i~~~g~~~~~------~   72 (190)
                      +++++|++++|++..+++++||++++|++++|+|+||||||||+++|+|++ ++.     .|.+.++|.++..      .
T Consensus         7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-~~~g~i~~~G~i~~~g~~i~~~~~~~~~   85 (261)
T PRK14258          7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN-ELESEVRVEGRVEFFNQNIYERRVNLNR   85 (261)
T ss_pred             eEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc-CCCCCccccceEEECCEEhhccccchHH
Confidence            689999999998878999999999999999999999999999999999987 443     7889998876521      1


Q ss_pred             cccccCCChh-------hHHHHHHH-------------HHHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHh
Q 029613           73 LNKNLGFSAE-------DRTENIRR-------------VGEVAKLFADAGL--------ICIASLISPYRKDR-DACRAM  123 (190)
Q Consensus        73 ~~~~i~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iaral  123 (190)
                      .+..++|.++       ...+++..             ...+...+...++        ...+..||+||+|| .+||++
T Consensus        86 ~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral  165 (261)
T PRK14258         86 LRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL  165 (261)
T ss_pred             hhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence            1122333222       12222211             0112233334443        12357799999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||...++.+++.+++-
T Consensus       166 ~~~p~vl--lLDEP~~~LD~~~~~~l~~~l~~l  196 (261)
T PRK14258        166 AVKPKVL--LMDEPCFGLDPIASMKVESLIQSL  196 (261)
T ss_pred             hcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence            9999999  999999999999999999988863

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.95  E-value=4.4e-28  Score=186.46  Aligned_cols=113  Identities=17%  Similarity=0.129  Sum_probs=98.8

Q ss_pred             CcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHH
Q 029613            8 TNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTEN   87 (190)
Q Consensus         8 ~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~   87 (190)
                      .|++++|+++.++++ +|++++|++++|+||||||||||+++|+|++ ++.+|.|.++|..+.        +.++...  
T Consensus         4 ~~l~~~~~~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~--------~~~q~~~--   71 (177)
T cd03222           4 PDCVKRYGVFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQL-IPNGDNDEWDGITPV--------YKPQYID--   71 (177)
T ss_pred             CCeEEEECCEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCcEEEECCEEEE--------EEcccCC--
Confidence            689999999889988 4999999999999999999999999999977 788999999986532        3332110  


Q ss_pred             HHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           88 IRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                                            +|+||+|| .+||+++.+|+++  +|||||++||+..++.+.+.+++-
T Consensus        72 ----------------------LSgGq~qrv~laral~~~p~ll--lLDEPts~LD~~~~~~l~~~l~~~  117 (177)
T cd03222          72 ----------------------LSGGELQRVAIAAALLRNATFY--LFDEPSAYLDIEQRLNAARAIRRL  117 (177)
T ss_pred             ----------------------CCHHHHHHHHHHHHHhcCCCEE--EEECCcccCCHHHHHHHHHHHHHH
Confidence                                  89999999 6999999999999  999999999999999888888764

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.4e-27  Score=192.66  Aligned_cols=151  Identities=21%  Similarity=0.174  Sum_probs=114.5

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--h--CCCcEEEEcCccccc------cc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--S--RGKLSYILDGDNLRH------GL   73 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~--~~~g~i~~~g~~~~~------~~   73 (190)
                      +++++|+++.|+++.+++++||++.+|++++|+|+||||||||+++|+|++.  +  +.+|.|.++|.++..      ..
T Consensus         3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~   82 (250)
T PRK14266          3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL   82 (250)
T ss_pred             EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence            5789999999988889999999999999999999999999999999999763  2  378999999977532      11


Q ss_pred             ccccCCChhh-------HHHHHHH------------H-HHHHHHHHHcCc--------ceeecccCccHHHH-HHHHHhC
Q 029613           74 NKNLGFSAED-------RTENIRR------------V-GEVAKLFADAGL--------ICIASLISPYRKDR-DACRAML  124 (190)
Q Consensus        74 ~~~i~~~~~~-------~~~~~~~------------~-~~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iarall  124 (190)
                      ...++|.+++       ..+++..            . ..+...+...++        ...+..+|+|++|| .+||+++
T Consensus        83 ~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~  162 (250)
T PRK14266         83 RKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA  162 (250)
T ss_pred             hhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence            2233433332       1222211            0 011222333333        12367799999999 6999999


Q ss_pred             CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+|+++  +|||||++||...+..+++.+++.
T Consensus       163 ~~p~ll--llDEP~~gLD~~~~~~l~~~l~~~  192 (250)
T PRK14266        163 VSPEVI--LMDEPCSALDPISTTKIEDLIHKL  192 (250)
T ss_pred             cCCCEE--EEcCCCccCCHHHHHHHHHHHHHH
Confidence            999999  999999999999999999999865

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.95  E-value=6.8e-28  Score=213.39  Aligned_cols=152  Identities=18%  Similarity=0.197  Sum_probs=116.4

Q ss_pred             cccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCcccccc--
Q 029613            3 TVGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRHG--   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~~--   72 (190)
                      +|++++|++++|++    +.+++++||++.+||+++|+||||||||||+|+|+|++++    +.+|.|.++|.++...  
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~   83 (529)
T PRK15134          4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE   83 (529)
T ss_pred             ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence            48999999999963    5799999999999999999999999999999999998843    2689999999875321  


Q ss_pred             -----cc-cccCCChhhH----------HHHHH-------------HHHHHHHHHHHcCcc-------eeecccCccHHH
Q 029613           73 -----LN-KNLGFSAEDR----------TENIR-------------RVGEVAKLFADAGLI-------CIASLISPYRKD  116 (190)
Q Consensus        73 -----~~-~~i~~~~~~~----------~~~~~-------------~~~~~~~~~~~~~~~-------~~~~~lS~g~kq  116 (190)
                           .+ ..++|.+++.          .+++.             ...++...+...++.       ..+..||+||+|
T Consensus        84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q  163 (529)
T PRK15134         84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ  163 (529)
T ss_pred             HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence                 11 2344443321          11110             001233445555653       247789999999


Q ss_pred             H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      | .+||+++.+|+++  +|||||++||+..++.+.+.+++.
T Consensus       164 rv~iAraL~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~l  202 (529)
T PRK15134        164 RVMIAMALLTRPELL--IADEPTTALDVSVQAQILQLLREL  202 (529)
T ss_pred             HHHHHHHHhcCCCEE--EEcCCCCccCHHHHHHHHHHHHHH
Confidence            9 6999999999999  999999999999999999888763

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.95  E-value=7.4e-28  Score=219.59  Aligned_cols=148  Identities=22%  Similarity=0.182  Sum_probs=114.8

Q ss_pred             cccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            5 GNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      ++++|++++|+ +.++++++||++++|+.++|+|+||||||||+++|+|++ +|.+|.|.+||.++..    .++..++|
T Consensus       474 I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~i~~  552 (708)
T TIGR01193       474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF-QARSGEILLNGFSLKDIDRHTLRQFINY  552 (708)
T ss_pred             EEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-CCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence            67899999997 467999999999999999999999999999999999977 7899999999987643    23444555


Q ss_pred             Chhh-------HHHHHHHH-------HHHHHHHHHc-----------Ccc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613           80 SAED-------RTENIRRV-------GEVAKLFADA-----------GLI----CIASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        80 ~~~~-------~~~~~~~~-------~~~~~~~~~~-----------~~~----~~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      .+++       ..+++...       .++...+...           |+.    +....+||||||| .+|||++++|++
T Consensus       553 v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~i  632 (708)
T TIGR01193       553 LPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKV  632 (708)
T ss_pred             EecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence            5554       22332211       0111111111           111    1246699999999 799999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +  +|||||++||....+.+++.+++
T Consensus       633 l--iLDE~Ts~LD~~te~~i~~~L~~  656 (708)
T TIGR01193       633 L--ILDESTSNLDTITEKKIVNNLLN  656 (708)
T ss_pred             E--EEeCccccCCHHHHHHHHHHHHH
Confidence            9  99999999999999999999986

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.95  E-value=1e-27  Score=214.29  Aligned_cols=149  Identities=21%  Similarity=0.263  Sum_probs=114.5

Q ss_pred             cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      ++++|++++|++  .++++++||++++|+.++|+|+||||||||+++|+|++ +|.+|.|.++|.++..    ..+..++
T Consensus       342 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~~~~~~~~~~~i~  420 (582)
T PRK11176        342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY-DIDEGEILLDGHDLRDYTLASLRNQVA  420 (582)
T ss_pred             EEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCceEEECCEEhhhcCHHHHHhhce
Confidence            788999999964  56999999999999999999999999999999999977 8899999999987643    2334455


Q ss_pred             CChhh-------HHHHHHHH-------HHHHHHHHHc-----------Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613           79 FSAED-------RTENIRRV-------GEVAKLFADA-----------GLI----CIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        79 ~~~~~-------~~~~~~~~-------~~~~~~~~~~-----------~~~----~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      |.+|+       ..+++...       .++...+...           |+.    +-...+||||||| .+||+++++|+
T Consensus       421 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~  500 (582)
T PRK11176        421 LVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSP  500 (582)
T ss_pred             EEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence            55554       22332210       0111111111           111    1245699999999 79999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++  +|||||++||+...+.+++.+.+.
T Consensus       501 il--ilDEptsaLD~~t~~~i~~~l~~~  526 (582)
T PRK11176        501 IL--ILDEATSALDTESERAIQAALDEL  526 (582)
T ss_pred             EE--EEECccccCCHHHHHHHHHHHHHH
Confidence            99  999999999999999999888763

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.95  E-value=1.1e-27  Score=202.65  Aligned_cols=143  Identities=18%  Similarity=0.190  Sum_probs=110.1

Q ss_pred             cceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--------ccccccCCC
Q 029613            9 NIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--------GLNKNLGFS   80 (190)
Q Consensus         9 ~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--------~~~~~i~~~   80 (190)
                      |++++|++..+  ++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..        ..+..++|.
T Consensus         4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~-~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v   80 (354)
T TIGR02142         4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLT-RPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV   80 (354)
T ss_pred             EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECccCccccccchhhCCeEEE
Confidence            78999987654  999999999999999999999999999999977 7889999999977632        112223333


Q ss_pred             hhh--------HHHHHHH----------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613           81 AED--------RTENIRR----------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMP  137 (190)
Q Consensus        81 ~~~--------~~~~~~~----------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP  137 (190)
                      +++        ..+++..          -..+..++...++..    .+..||+||+|| .+||+++.+|+++  +||||
T Consensus        81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ll--lLDEP  158 (354)
T TIGR02142        81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLL--LMDEP  158 (354)
T ss_pred             ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE--EEcCC
Confidence            322        2222221          012334455555543    367899999999 6999999999999  99999


Q ss_pred             chhhhhcChHHHHHHHHcC
Q 029613          138 LELCEARDPKGLYKLARAG  156 (190)
Q Consensus       138 ~~~ld~~~~~~~~~~~~~~  156 (190)
                      |++||+..++.+++.+++.
T Consensus       159 ts~LD~~~~~~l~~~L~~l  177 (354)
T TIGR02142       159 LAALDDPRKYEILPYLERL  177 (354)
T ss_pred             CcCCCHHHHHHHHHHHHHH
Confidence            9999999999999888764

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.8e-27  Score=193.55  Aligned_cols=152  Identities=16%  Similarity=0.114  Sum_probs=116.4

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------cc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------GL   73 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------~~   73 (190)
                      .+.++++++.|+...+++++||++.+|++++|+|+||||||||+++|+|++.+    +.+|.|.++|.++..      ..
T Consensus         8 ~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~   87 (261)
T PRK14263          8 VMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVV   87 (261)
T ss_pred             eEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhh
Confidence            57888999999988999999999999999999999999999999999998743    268999999987632      11


Q ss_pred             ccccCCChhh-------HHHHHHHH-----------HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHHhCCC
Q 029613           74 NKNLGFSAED-------RTENIRRV-----------GEVAKLFADAGLI--------CIASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        74 ~~~i~~~~~~-------~~~~~~~~-----------~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iarall~~  126 (190)
                      +..++|.+++       ..+++...           ..+...+...++.        ..+..+|+||+|| .+||+++.+
T Consensus        88 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~  167 (261)
T PRK14263         88 RRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATE  167 (261)
T ss_pred             hhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            2223443332       22222210           1233344444442        1245699999999 699999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      |+++  +|||||++||+..++.+++.+++..
T Consensus       168 p~ll--llDEPtsgLD~~~~~~l~~~l~~~~  196 (261)
T PRK14263        168 PEVL--LLDEPCSALDPIATRRVEELMVELK  196 (261)
T ss_pred             CCEE--EEeCCCccCCHHHHHHHHHHHHHHh
Confidence            9999  9999999999999999999998753

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.95  E-value=8.5e-28  Score=192.71  Aligned_cols=141  Identities=14%  Similarity=0.126  Sum_probs=104.4

Q ss_pred             ccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCCh-h------
Q 029613           13 QESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFSA-E------   82 (190)
Q Consensus        13 ~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~~-~------   82 (190)
                      .|+.+++++++||++++|++++|+|+||||||||+++|+|++ ++.+|+|.++|.+...   .....++|.+ +      
T Consensus        30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~  108 (236)
T cd03267          30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL-QPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW  108 (236)
T ss_pred             ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence            345567999999999999999999999999999999999977 7889999999875421   1111222221 1      


Q ss_pred             --hHHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhh
Q 029613           83 --DRTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEA  143 (190)
Q Consensus        83 --~~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~  143 (190)
                        ...+++..            ...+..++...++..    .+..+|+||+|| .+|++++.+|+++  +|||||++||+
T Consensus       109 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll--llDEPt~~LD~  186 (236)
T cd03267         109 DLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEIL--FLDEPTIGLDV  186 (236)
T ss_pred             CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE--EEcCCCCCCCH
Confidence              01122111            011223344445432    367799999999 6999999999999  99999999999


Q ss_pred             cChHHHHHHHHcC
Q 029613          144 RDPKGLYKLARAG  156 (190)
Q Consensus       144 ~~~~~~~~~~~~~  156 (190)
                      ..++.+++.+++-
T Consensus       187 ~~~~~l~~~l~~~  199 (236)
T cd03267         187 VAQENIRNFLKEY  199 (236)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998864

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.95  E-value=6.6e-28  Score=215.95  Aligned_cols=149  Identities=17%  Similarity=0.126  Sum_probs=115.4

Q ss_pred             cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      ++++|++++|++ .++++|+||++++|+.++|+|+||||||||+++|+|++ +|.+|.|.+||.++..    .++..++|
T Consensus       341 i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~idg~~i~~~~~~~l~~~i~~  419 (592)
T PRK10790        341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY-PLTEGEIRLDGRPLSSLSHSVLRQGVAM  419 (592)
T ss_pred             EEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCceEEECCEEhhhCCHHHHHhheEE
Confidence            678999999964 57999999999999999999999999999999999977 8889999999987643    33445555


Q ss_pred             Chhh-------HHHHHHHH-----HHHHHHHHHcCc-----------c----eeecccCccHHHH-HHHHHhCCCCCeEE
Q 029613           80 SAED-------RTENIRRV-----GEVAKLFADAGL-----------I----CIASLISPYRKDR-DACRAMLPDSNFIE  131 (190)
Q Consensus        80 ~~~~-------~~~~~~~~-----~~~~~~~~~~~~-----------~----~~~~~lS~g~kqr-~iarall~~~~il~  131 (190)
                      .+|+       ..+|+...     .++.......++           .    .....+||||||| ++|||++.+|+++ 
T Consensus       420 v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~il-  498 (592)
T PRK10790        420 VQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQIL-  498 (592)
T ss_pred             EccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEE-
Confidence            5554       22333211     111112222221           1    1245699999999 7999999999999 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHcC
Q 029613          132 VFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                       +|||||++||+...+.+.+.+++.
T Consensus       499 -llDEpts~LD~~t~~~i~~~l~~~  522 (592)
T PRK10790        499 -ILDEATANIDSGTEQAIQQALAAV  522 (592)
T ss_pred             -EEeCCcccCCHHHHHHHHHHHHHH
Confidence             999999999999999999888763

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.8e-27  Score=193.76  Aligned_cols=151  Identities=18%  Similarity=0.170  Sum_probs=114.0

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-C---CCcEEEEcCcccc--------c
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-R---GKLSYILDGDNLR--------H   71 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~---~~g~i~~~g~~~~--------~   71 (190)
                      +|+++|++++|++.++++++||++++|++++|+|+||||||||+++|+|++.+ +   .+|.|.++|.++.        .
T Consensus        16 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~   95 (265)
T PRK14252         16 KSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPI   95 (265)
T ss_pred             eEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHH
Confidence            68899999999888899999999999999999999999999999999997732 2   6899999886542        0


Q ss_pred             ccccccCCChhh-------HHHHHHHH-------------HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHH
Q 029613           72 GLNKNLGFSAED-------RTENIRRV-------------GEVAKLFADAGLI--------CIASLISPYRKDR-DACRA  122 (190)
Q Consensus        72 ~~~~~i~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iara  122 (190)
                      .....++|.+++       ..+++...             ..+...+...++.        ..+..+|+|++|| .+||+
T Consensus        96 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara  175 (265)
T PRK14252         96 EVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARA  175 (265)
T ss_pred             HHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHH
Confidence            112233443332       22222210             1122233333331        2356799999999 69999


Q ss_pred             hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++.+|+++  +|||||++||...++.+.+.+++.
T Consensus       176 l~~~p~ll--llDEPt~gLD~~~~~~l~~~l~~l  207 (265)
T PRK14252        176 LATDPEIL--LFDEPTSALDPIATASIEELISDL  207 (265)
T ss_pred             HHcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence            99999999  999999999999999999988864

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.94  E-value=1.3e-27  Score=218.12  Aligned_cols=169  Identities=20%  Similarity=0.156  Sum_probs=119.9

Q ss_pred             ccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613            4 VGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN   76 (190)
Q Consensus         4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~   76 (190)
                      .++++|++++|++   .++++|+||++++|+.++|+||||||||||+++|+|++ ++.+|.|.+||.++..    ..+..
T Consensus       478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~  556 (711)
T TIGR00958       478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY-QPTGGQVLLDGVPLVQYDHHYLHRQ  556 (711)
T ss_pred             eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEEEECCEEHHhcCHHHHHhh
Confidence            3789999999964   46999999999999999999999999999999999987 8899999999987643    23334


Q ss_pred             cCCChhh-------HHHHHHHH------HHHHHHHHHc-----------Ccc----eeecccCccHHHH-HHHHHhCCCC
Q 029613           77 LGFSAED-------RTENIRRV------GEVAKLFADA-----------GLI----CIASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        77 i~~~~~~-------~~~~~~~~------~~~~~~~~~~-----------~~~----~~~~~lS~g~kqr-~iarall~~~  127 (190)
                      ++|.+|+       .++|+..-      .++...+...           |+.    +-...+||||||| ++||+++++|
T Consensus       557 i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p  636 (711)
T TIGR00958       557 VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP  636 (711)
T ss_pred             ceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence            4555443       22332210      1111111111           111    1245699999999 7999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc--cccccccCCCCCCceEE
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL--SIFSFCYYEKLIPRTCK  179 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~p~~~~  179 (190)
                      +++  +||||||+||....+.+++ ...  .++.+  -+.+. .+.....|.++
T Consensus       637 ~IL--ILDEpTSaLD~~te~~i~~-~~~--~~~~TvIiItHr-l~~i~~aD~Ii  684 (711)
T TIGR00958       637 RVL--ILDEATSALDAECEQLLQE-SRS--RASRTVLLIAHR-LSTVERADQIL  684 (711)
T ss_pred             CEE--EEEccccccCHHHHHHHHH-hhc--cCCCeEEEEecc-HHHHHhCCEEE
Confidence            999  9999999999998888887 222  23333  44444 44444455433

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.94  E-value=1e-27  Score=214.13  Aligned_cols=150  Identities=19%  Similarity=0.245  Sum_probs=116.7

Q ss_pred             ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      .++++|++++|++  .++++++||++++|++++|+||||||||||+++|+|.+ ++.+|.|.++|.++..    ..+..+
T Consensus       338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~p~~G~I~i~g~~i~~~~~~~~r~~i  416 (574)
T PRK11160        338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW-DPQQGEILLNGQPIADYSEAALRQAI  416 (574)
T ss_pred             eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEhhhCCHHHHHhhe
Confidence            3789999999964  46999999999999999999999999999999999977 8899999999987643    234445


Q ss_pred             CCChhh-------HHHHHHHH------HHHHHHHHHcCcce--------------eecccCccHHHH-HHHHHhCCCCCe
Q 029613           78 GFSAED-------RTENIRRV------GEVAKLFADAGLIC--------------IASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        78 ~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~~--------------~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      ++.+++       ..+|+...      .++...+...++..              ....+||||||| ++||+++.+|++
T Consensus       417 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~i  496 (574)
T PRK11160        417 SVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPL  496 (574)
T ss_pred             eEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            555554       23333210      12222222222221              245699999999 799999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +  +|||||++||+...+.+.+.+++.
T Consensus       497 l--ilDE~ts~lD~~t~~~i~~~l~~~  521 (574)
T PRK11160        497 L--LLDEPTEGLDAETERQILELLAEH  521 (574)
T ss_pred             E--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            9  999999999999999999998864

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.94  E-value=3e-27  Score=210.41  Aligned_cols=150  Identities=15%  Similarity=0.095  Sum_probs=110.6

Q ss_pred             cccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-cccccccccCC-
Q 029613            3 TVGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-LRHGLNKNLGF-   79 (190)
Q Consensus         3 ~~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-~~~~~~~~i~~-   79 (190)
                      +||+++|++++|+ ++.+++++||++.+|++++|+||||||||||+++|+|++ ++.+|.|.+++.. +.. +.+...+ 
T Consensus         5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~-~p~~G~i~~~~~~~i~~-v~Q~~~~~   82 (556)
T PRK11819          5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD-KEFEGEARPAPGIKVGY-LPQEPQLD   82 (556)
T ss_pred             EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCCCEEEE-EecCCCCC
Confidence            4899999999998 788999999999999999999999999999999999987 6788998886431 110 0000000 


Q ss_pred             ChhhHHHHHHH------------------------------------------------HHHHHHHHHHcCc---ceeec
Q 029613           80 SAEDRTENIRR------------------------------------------------VGEVAKLFADAGL---ICIAS  108 (190)
Q Consensus        80 ~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~---~~~~~  108 (190)
                      ......+++..                                                ..++..++...++   ...+.
T Consensus        83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~  162 (556)
T PRK11819         83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT  162 (556)
T ss_pred             CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchh
Confidence            00000111100                                                0112223333333   22367


Q ss_pred             ccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          109 LISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       109 ~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .||+||+|| .+||+++.+|+++  +|||||++||+...+.+.+.+++-
T Consensus       163 ~LSgGqkqrv~la~al~~~p~vl--LLDEPt~~LD~~~~~~l~~~L~~~  209 (556)
T PRK11819        163 KLSGGERRRVALCRLLLEKPDML--LLDEPTNHLDAESVAWLEQFLHDY  209 (556)
T ss_pred             hcCHHHHHHHHHHHHHhCCCCEE--EEcCCCCcCChHHHHHHHHHHHhC
Confidence            799999999 6999999999999  999999999999999999999874

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.94  E-value=1.4e-27  Score=190.16  Aligned_cols=150  Identities=19%  Similarity=0.198  Sum_probs=112.7

Q ss_pred             ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh---CCCcEEEEcCccccc-cccc
Q 029613            4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS---RGKLSYILDGDNLRH-GLNK   75 (190)
Q Consensus         4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~---~~~g~i~~~g~~~~~-~~~~   75 (190)
                      .+.++|++++|.+    +++++++||++++|++++|+||||||||||+++|+|++ +   +.+|.|.++|.++.. ..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~-~~~~~~~G~i~~~g~~~~~~~~~~   81 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV-EGGGTTSGQILFNGQPRKPDQFQK   81 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc-CCCCCCceEEEECCEECChHHhcc
Confidence            4678999999964    57999999999999999999999999999999999987 5   789999999976532 1112


Q ss_pred             ccCCChhh--------HHHHHHHH---------------HHHHH-HHHHcCcc----eeecccCccHHHH-HHHHHhCCC
Q 029613           76 NLGFSAED--------RTENIRRV---------------GEVAK-LFADAGLI----CIASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        76 ~i~~~~~~--------~~~~~~~~---------------~~~~~-~~~~~~~~----~~~~~lS~g~kqr-~iarall~~  126 (190)
                      .++|.+++        ..+++...               ..... .+...++.    ..+..+|+||+|| .+||+++.+
T Consensus        82 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  161 (226)
T cd03234          82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD  161 (226)
T ss_pred             cEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence            22332221        12222110               01111 33333332    2357799999999 699999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+++  +|||||++||+..++.+.+.+++.
T Consensus       162 p~il--llDEP~~gLD~~~~~~~~~~l~~~  189 (226)
T cd03234         162 PKVL--ILDEPTSGLDSFTALNLVSTLSQL  189 (226)
T ss_pred             CCEE--EEeCCCcCCCHHHHHHHHHHHHHH
Confidence            9999  999999999999999999999864

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.94  E-value=1e-27  Score=210.92  Aligned_cols=151  Identities=15%  Similarity=0.119  Sum_probs=115.1

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEcCcccccc-----ccccc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILDGDNLRHG-----LNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~g~~~~~~-----~~~~i   77 (190)
                      +++++|++++|++.++++++||++.+|++++|+||||||||||+++|+|++++ +.+|.|.++|.++...     .+..+
T Consensus         1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   80 (500)
T TIGR02633         1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI   80 (500)
T ss_pred             CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence            47899999999988899999999999999999999999999999999997732 3689999999765320     11223


Q ss_pred             CCChhh--------HHHHHHH----------------HHHHHHHHHHcCcce-----eecccCccHHHH-HHHHHhCCCC
Q 029613           78 GFSAED--------RTENIRR----------------VGEVAKLFADAGLIC-----IASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        78 ~~~~~~--------~~~~~~~----------------~~~~~~~~~~~~~~~-----~~~~lS~g~kqr-~iarall~~~  127 (190)
                      +|.+++        ..+++..                ...+..++...++..     .+..||+||+|| .+||+++.+|
T Consensus        81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p  160 (500)
T TIGR02633        81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA  160 (500)
T ss_pred             EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCC
Confidence            343332        1111110                012333455555532     267899999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++  +|||||++||+..++.+++.+++.
T Consensus       161 ~ll--lLDEPt~~LD~~~~~~l~~~l~~l  187 (500)
T TIGR02633       161 RLL--ILDEPSSSLTEKETEILLDIIRDL  187 (500)
T ss_pred             CEE--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence            999  999999999999999999888763

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.1e-27  Score=210.24  Aligned_cols=147  Identities=15%  Similarity=0.232  Sum_probs=113.1

Q ss_pred             cCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----ccccccCCCh
Q 029613            7 STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKNLGFSA   81 (190)
Q Consensus         7 ~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~i~~~~   81 (190)
                      ++|++++|++.++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..     ..+..++|.+
T Consensus         1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   79 (491)
T PRK10982          1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY-QKDSGSILFQGKEIDFKSSKEALENGISMVH   79 (491)
T ss_pred             CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence            478999998888999999999999999999999999999999999977 7889999999976531     0112233332


Q ss_pred             hh--------HHHHHH---------------HHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613           82 ED--------RTENIR---------------RVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVF  133 (190)
Q Consensus        82 ~~--------~~~~~~---------------~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vl  133 (190)
                      ++        ..+++.               ....+..++...++.    ..+..||+||+|| .+||+++.+|+++  +
T Consensus        80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~ll--l  157 (491)
T PRK10982         80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIV--I  157 (491)
T ss_pred             cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEE--E
Confidence            22        111111               011233344455543    2367899999999 6999999999999  9


Q ss_pred             eeCCchhhhhcChHHHHHHHHcC
Q 029613          134 MNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       134 lDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |||||++||+..++.+++.+++.
T Consensus       158 LDEPt~~LD~~~~~~l~~~l~~l  180 (491)
T PRK10982        158 MDEPTSSLTEKEVNHLFTIIRKL  180 (491)
T ss_pred             EeCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999888764

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.7e-27  Score=193.32  Aligned_cols=151  Identities=22%  Similarity=0.251  Sum_probs=111.5

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE------cCccccc----c
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL------DGDNLRH----G   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~------~g~~~~~----~   72 (190)
                      ++++++|++++|++..+++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.+      +|.++..    .
T Consensus         9 ~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~-~~~~G~v~~~G~~~~~g~~~~~~~~~~   87 (257)
T PRK14246          9 DVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI-EIYDSKIKVDGKVLYFGKDIFQIDAIK   87 (257)
T ss_pred             hheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCcCceeEcCEEEECCcccccCCHHH
Confidence            4789999999999999999999999999999999999999999999999977 566655444      4444321    1


Q ss_pred             cccccCCChhh--------HHHHHHH------------H-HHHHHHHHHcCcc--------eeecccCccHHHH-HHHHH
Q 029613           73 LNKNLGFSAED--------RTENIRR------------V-GEVAKLFADAGLI--------CIASLISPYRKDR-DACRA  122 (190)
Q Consensus        73 ~~~~i~~~~~~--------~~~~~~~------------~-~~~~~~~~~~~~~--------~~~~~lS~g~kqr-~iara  122 (190)
                      .+..++|.+++        ..+++..            . ..+...+...++.        ..+..+|+||+|| .+||+
T Consensus        88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lara  167 (257)
T PRK14246         88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARA  167 (257)
T ss_pred             HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHH
Confidence            11222332222        1122110            0 1122334444442        2367799999999 69999


Q ss_pred             hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++.+|+++  +|||||++||...++.+.+.+.+-
T Consensus       168 l~~~P~ll--llDEPt~~LD~~~~~~l~~~l~~~  199 (257)
T PRK14246        168 LALKPKVL--LMDEPTSMIDIVNSQAIEKLITEL  199 (257)
T ss_pred             HHcCCCEE--EEcCCCccCCHHHHHHHHHHHHHH
Confidence            99999999  999999999999999999999764

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.1e-27  Score=211.14  Aligned_cols=152  Identities=15%  Similarity=0.155  Sum_probs=115.5

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----ccccccC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKNLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~i~   78 (190)
                      |++++|+++.|+  .+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++..     ..+..++
T Consensus       265 ~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~~i~  341 (510)
T PRK09700        265 VFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD-KRAGGEIRLNGKDISPRSPLDAVKKGMA  341 (510)
T ss_pred             EEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-cCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence            689999998764  4899999999999999999999999999999999987 7789999999976531     1112334


Q ss_pred             CChhh-----------HHHHHHH---------------------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHH
Q 029613           79 FSAED-----------RTENIRR---------------------VGEVAKLFADAGLI-----CIASLISPYRKDR-DAC  120 (190)
Q Consensus        79 ~~~~~-----------~~~~~~~---------------------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~ia  120 (190)
                      |.+++           ..+++..                     -..+..++...++.     ..+..||+||+|| .+|
T Consensus       342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lA  421 (510)
T PRK09700        342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLIS  421 (510)
T ss_pred             EccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHH
Confidence            43332           1111110                     01123445555553     2367899999999 599


Q ss_pred             HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      |+++.+|+++  +|||||++||...++.+++.+++....|
T Consensus       422 ral~~~p~lL--lLDEPt~~LD~~~~~~l~~~l~~l~~~g  459 (510)
T PRK09700        422 KWLCCCPEVI--IFDEPTRGIDVGAKAEIYKVMRQLADDG  459 (510)
T ss_pred             HHHhcCCCEE--EECCCCCCcCHHHHHHHHHHHHHHHHCC
Confidence            9999999999  9999999999999999999988643334

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.94  E-value=1.6e-27  Score=210.87  Aligned_cols=150  Identities=21%  Similarity=0.188  Sum_probs=115.4

Q ss_pred             ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      -++++|++++|++  .++++++||++++|+.++|+|+||||||||+++|+|++ ++.+|.|.++|.++..    .++..+
T Consensus       320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~I~~~g~~i~~~~~~~lr~~i  398 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV-DPTEGSIAVNGVPLADADADSWRDQI  398 (529)
T ss_pred             eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEehhhCCHHHHHhhe
Confidence            3688999999975  46999999999999999999999999999999999977 8899999999987643    233345


Q ss_pred             CCChhh-------HHHHHHHH------HHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCCCC
Q 029613           78 GFSAED-------RTENIRRV------GEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        78 ~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      +|.+++       ..+++...      .++...+...++.               +....+||||||| ++||+++++|+
T Consensus       399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~  478 (529)
T TIGR02857       399 AWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP  478 (529)
T ss_pred             EEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence            555544       23332210      1111112211111               2245699999999 79999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++  +|||||++||+...+.+++.+++.
T Consensus       479 il--ilDE~ts~lD~~~~~~i~~~l~~~  504 (529)
T TIGR02857       479 LL--LLDEPTAHLDAETEALVTEALRAL  504 (529)
T ss_pred             EE--EEeCcccccCHHHHHHHHHHHHHh
Confidence            99  999999999999999999999864

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.94  E-value=1.8e-27  Score=194.87  Aligned_cols=148  Identities=19%  Similarity=0.201  Sum_probs=112.2

Q ss_pred             cccCcceecc--CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQE--SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~--~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      ++++|++++|  +...+++++||++++|++++|+|+||||||||+++|+|++ + .+|.|+++|.++..    .++..++
T Consensus         3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~-~-~~G~I~i~g~~i~~~~~~~lr~~i~   80 (275)
T cd03289           3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-N-TEGDIQIDGVSWNSVPLQKWRKAFG   80 (275)
T ss_pred             EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc-C-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence            5789999999  4567999999999999999999999999999999999987 4 67999999987632    1222334


Q ss_pred             CChhh-------HHHHHHHH-----HHHHHHHHHcCcce----ee-----------cccCccHHHH-HHHHHhCCCCCeE
Q 029613           79 FSAED-------RTENIRRV-----GEVAKLFADAGLIC----IA-----------SLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        79 ~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~~----~~-----------~~lS~g~kqr-~iarall~~~~il  130 (190)
                      |.+++       ..+++...     .++...+...++..    .+           ..+|+||+|| .+||+++.+|+++
T Consensus        81 ~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~il  160 (275)
T cd03289          81 VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL  160 (275)
T ss_pred             EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            44332       12222110     12223333344322    12           2399999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +|||||++||+...+.+.+.+++-
T Consensus       161 --llDEpts~LD~~~~~~l~~~l~~~  184 (275)
T cd03289         161 --LLDEPSAHLDPITYQVIRKTLKQA  184 (275)
T ss_pred             --EEECccccCCHHHHHHHHHHHHHh
Confidence              999999999999999999999863

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.94  E-value=1.3e-27  Score=213.91  Aligned_cols=148  Identities=18%  Similarity=0.179  Sum_probs=112.1

Q ss_pred             cccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            5 GNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      ++++|+++.| ++.++++|+||++++|+.++|+|+||||||||+++|+|++  |.+|.|.++|.++..    .++..++|
T Consensus       350 i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p~~G~I~i~g~~i~~~~~~~lr~~i~~  427 (588)
T PRK11174        350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL--PYQGSLKINGIELRELDPESWRKHLSW  427 (588)
T ss_pred             EEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCcEEEECCEecccCCHHHHHhheEE
Confidence            6788998655 5678999999999999999999999999999999999976  568999999987643    23444555


Q ss_pred             Chhh-------HHHHHHH------------HH---HHHHHHHHc--Ccce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613           80 SAED-------RTENIRR------------VG---EVAKLFADA--GLIC----IASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        80 ~~~~-------~~~~~~~------------~~---~~~~~~~~~--~~~~----~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      .+|+       .++|+..            ..   .+...+...  |+..    -...|||||||| ++|||++++|+++
T Consensus       428 v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~Il  507 (588)
T PRK11174        428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLL  507 (588)
T ss_pred             ecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            5554       2222211            11   111122211  2221    245699999999 7999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +||||||+||....+.+.+.+++.
T Consensus       508 --iLDE~TSaLD~~te~~i~~~l~~~  531 (588)
T PRK11174        508 --LLDEPTASLDAHSEQLVMQALNAA  531 (588)
T ss_pred             --EEeCCccCCCHHHHHHHHHHHHHH
Confidence              999999999999999999888764

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.94  E-value=2.3e-27  Score=211.49  Aligned_cols=148  Identities=22%  Similarity=0.262  Sum_probs=116.2

Q ss_pred             cccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            5 GNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      ++++|++++|+ +.++++|+||.+++|+.++|+|||||||||++++|.+++ ++.+|.|.+||.++..    .++..+++
T Consensus       329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~-~~~~G~I~idg~dI~~i~~~~lr~~I~~  407 (567)
T COG1132         329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY-DPTSGEILIDGIDIRDISLDSLRKRIGI  407 (567)
T ss_pred             EEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCeEEECCEehhhcCHHHHHHhccE
Confidence            68999999999 589999999999999999999999999999999999977 7889999999988753    34455555


Q ss_pred             Chhh-------HHHHHH------------HH---HHHHHHHHHc--Cccee----ecccCccHHHH-HHHHHhCCCCCeE
Q 029613           80 SAED-------RTENIR------------RV---GEVAKLFADA--GLICI----ASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        80 ~~~~-------~~~~~~------------~~---~~~~~~~~~~--~~~~~----~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      .+|+       ..+|+.            +.   ....+.+...  |....    ...|||||||| ++|||++++|+++
T Consensus       408 V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~IL  487 (567)
T COG1132         408 VSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPIL  487 (567)
T ss_pred             EcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence            5554       122221            11   1112222222  23222    45699999999 7999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHc
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                        +||||||++|.+..+.+.+.+++
T Consensus       488 --ILDEaTSalD~~tE~~I~~~l~~  510 (567)
T COG1132         488 --ILDEATSALDTETEALIQDALKK  510 (567)
T ss_pred             --EEeccccccCHHhHHHHHHHHHH
Confidence              99999999999999999988874

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.4e-27  Score=210.45  Aligned_cols=156  Identities=16%  Similarity=0.249  Sum_probs=116.5

Q ss_pred             cccccCcceeccC---ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cc
Q 029613            3 TVGNSTNIFWQES---PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LN   74 (190)
Q Consensus         3 ~~l~~~~l~~~~~---~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~   74 (190)
                      +|++++|+++.|+   +..+++++||++++|++++|+|+||||||||+|+|+|++.++.+|.|.++|.++...     .+
T Consensus       258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~  337 (506)
T PRK13549        258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA  337 (506)
T ss_pred             ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence            3789999999993   467999999999999999999999999999999999987325899999998765310     11


Q ss_pred             cccCCChhh-----------HHHHHH-----H------------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHH
Q 029613           75 KNLGFSAED-----------RTENIR-----R------------VGEVAKLFADAGLI-----CIASLISPYRKDR-DAC  120 (190)
Q Consensus        75 ~~i~~~~~~-----------~~~~~~-----~------------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~ia  120 (190)
                      ..++|.+++           ..+++.     .            ...+..++...++.     ..+..||+||+|| .+|
T Consensus       338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA  417 (506)
T PRK13549        338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA  417 (506)
T ss_pred             CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH
Confidence            223333322           111111     0            01233445555553     2367899999999 599


Q ss_pred             HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      |+++.+|+++  +|||||++||+..++.+++.+++...+|
T Consensus       418 ~al~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~l~~~g  455 (506)
T PRK13549        418 KCLLLNPKIL--ILDEPTRGIDVGAKYEIYKLINQLVQQG  455 (506)
T ss_pred             HHHhhCCCEE--EEcCCCCCcCHhHHHHHHHHHHHHHHCC
Confidence            9999999999  9999999999999999998887643334

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.94  E-value=1.4e-27  Score=209.97  Aligned_cols=155  Identities=14%  Similarity=0.231  Sum_probs=115.7

Q ss_pred             ccccCcceecc---CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----cccc
Q 029613            4 VGNSTNIFWQE---SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNK   75 (190)
Q Consensus         4 ~l~~~~l~~~~---~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~   75 (190)
                      |++++|+++.|   ++..+++++||++.+|++++|+||||||||||+++|+|++.++.+|.|.++|.++..     ..+.
T Consensus       257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~  336 (500)
T TIGR02633       257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA  336 (500)
T ss_pred             eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence            68999999999   346799999999999999999999999999999999998732478999999876531     1122


Q ss_pred             ccCCChhhH-----------HHHHH-----------------HHHHHHHHHHHcCcc-----eeecccCccHHHH-HHHH
Q 029613           76 NLGFSAEDR-----------TENIR-----------------RVGEVAKLFADAGLI-----CIASLISPYRKDR-DACR  121 (190)
Q Consensus        76 ~i~~~~~~~-----------~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iar  121 (190)
                      .++|.+++.           .+++.                 .-..+..++..+++.     ..+..||+||+|| .+||
T Consensus       337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~  416 (500)
T TIGR02633       337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAK  416 (500)
T ss_pred             CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHH
Confidence            233333221           01100                 001233445555553     2367899999999 6999


Q ss_pred             HhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          122 AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       122 all~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      +++.+|+++  +|||||++||...++.+++.+++....|
T Consensus       417 al~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~l~~~g  453 (500)
T TIGR02633       417 MLLTNPRVL--ILDEPTRGVDVGAKYEIYKLINQLAQEG  453 (500)
T ss_pred             HHhhCCCEE--EEcCCCCCcCHhHHHHHHHHHHHHHhCC
Confidence            999999999  9999999999999999998887643334

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.94  E-value=2.5e-27  Score=207.94  Aligned_cols=152  Identities=14%  Similarity=0.071  Sum_probs=116.2

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC-CCcEEEEcCccccc-----ccccc
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR-GKLSYILDGDNLRH-----GLNKN   76 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~-~~g~i~~~g~~~~~-----~~~~~   76 (190)
                      +|++++|+++.|++..+++++||++++|++++|+||||||||||+|+|+|++ ++ .+|.|.++|.++..     ..+..
T Consensus       259 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~-~~~~~G~i~~~g~~~~~~~~~~~~~~~  337 (490)
T PRK10938        259 PRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQGYSNDLTLFGRRRGSGETIWDIKKH  337 (490)
T ss_pred             ceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CcccCCeEEEecccCCCCCCHHHHHhh
Confidence            4789999999998888999999999999999999999999999999999965 43 68999999865421     11223


Q ss_pred             cCCChhhH----------HHHHH----------------HHHHHHHHHHHcCcce-----eecccCccHHHH-HHHHHhC
Q 029613           77 LGFSAEDR----------TENIR----------------RVGEVAKLFADAGLIC-----IASLISPYRKDR-DACRAML  124 (190)
Q Consensus        77 i~~~~~~~----------~~~~~----------------~~~~~~~~~~~~~~~~-----~~~~lS~g~kqr-~iarall  124 (190)
                      ++|.+++.          .+.+.                .-..+..++...++..     .+..||+||+|| .+||+++
T Consensus       338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~  417 (490)
T PRK10938        338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV  417 (490)
T ss_pred             ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh
Confidence            44444321          01100                0012233444555533     367899999999 6999999


Q ss_pred             CCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      .+|+++  +|||||++||+..++.+.+.+++-.
T Consensus       418 ~~p~ll--lLDEPt~gLD~~~~~~l~~~L~~l~  448 (490)
T PRK10938        418 KHPTLL--ILDEPLQGLDPLNRQLVRRFVDVLI  448 (490)
T ss_pred             cCCCEE--EEcCccccCCHHHHHHHHHHHHHHH
Confidence            999999  9999999999999999999888743

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.94  E-value=3e-27  Score=191.73  Aligned_cols=150  Identities=19%  Similarity=0.169  Sum_probs=111.1

Q ss_pred             ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      +++++|++++|+.  ..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..    .....+
T Consensus        19 ~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~i~g~~i~~~~~~~~~~~i   97 (257)
T cd03288          19 EIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV-DIFDGKIVIDGIDISKLPLHTLRSRL   97 (257)
T ss_pred             eEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc-CCCCCeEEECCEEhhhCCHHHHhhhE
Confidence            5789999999976  57999999999999999999999999999999999987 7889999999976532    111222


Q ss_pred             CCChhh-------HHHHHH--------HHH------HHHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613           78 GFSAED-------RTENIR--------RVG------EVAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        78 ~~~~~~-------~~~~~~--------~~~------~~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      +|.+++       ..+++.        .+.      .+...+...  ++.    ..+..+|+||+|| .+||+++.+|++
T Consensus        98 ~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l  177 (257)
T cd03288          98 SIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSI  177 (257)
T ss_pred             EEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            332221       111110        000      011112111  111    1245799999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +  +|||||++||+...+.+++.+++-
T Consensus       178 l--llDEPt~gLD~~~~~~l~~~l~~~  202 (257)
T cd03288         178 L--IMDEATASIDMATENILQKVVMTA  202 (257)
T ss_pred             E--EEeCCccCCCHHHHHHHHHHHHHh
Confidence            9  999999999999999999988864

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.6e-27  Score=214.62  Aligned_cols=151  Identities=19%  Similarity=0.197  Sum_probs=117.1

Q ss_pred             cccccCcceeccCc-----------cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613            3 TVGNSTNIFWQESP-----------IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH   71 (190)
Q Consensus         3 ~~l~~~~l~~~~~~-----------~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~   71 (190)
                      +||+++|+++.|+.           ..+++++||++.+|++++|+|+||||||||+|+|+|++ ++.+|.|.++|.++..
T Consensus       312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~-~p~~G~I~~~g~~i~~  390 (623)
T PRK10261        312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV-ESQGGEIIFNGQRIDT  390 (623)
T ss_pred             ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCcEEEECCEECCc
Confidence            37899999999951           46999999999999999999999999999999999987 7889999999976532


Q ss_pred             c-------cccccCCChhh----------HHHHHHH-------------HHHHHHHHHHcCcc-----eeecccCccHHH
Q 029613           72 G-------LNKNLGFSAED----------RTENIRR-------------VGEVAKLFADAGLI-----CIASLISPYRKD  116 (190)
Q Consensus        72 ~-------~~~~i~~~~~~----------~~~~~~~-------------~~~~~~~~~~~~~~-----~~~~~lS~g~kq  116 (190)
                      .       .+..++|.+++          ..+++..             ...+..++...++.     ..+..||+||+|
T Consensus       391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ  470 (623)
T PRK10261        391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ  470 (623)
T ss_pred             CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence            1       12234443332          1111110             01233455556653     247889999999


Q ss_pred             H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      | .|||+++.+|+++  +|||||++||...+..+++.+++.
T Consensus       471 Rv~iAraL~~~p~ll--llDEPts~LD~~~~~~i~~ll~~l  509 (623)
T PRK10261        471 RICIARALALNPKVI--IADEAVSALDVSIRGQIINLLLDL  509 (623)
T ss_pred             HHHHHHHHhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            9 6999999999999  999999999999999999988663

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.94  E-value=6e-27  Score=190.55  Aligned_cols=150  Identities=21%  Similarity=0.217  Sum_probs=108.8

Q ss_pred             CCcccccCcceeccCccc------------------------cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh
Q 029613            1 MATVGNSTNIFWQESPIG------------------------RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS   56 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~------------------------~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~   56 (190)
                      |...++++|++|-||..+                        -++++||+++.|||+.|+|.||||||||+|++++++ .
T Consensus         1 ~~~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi-e   79 (386)
T COG4175           1 MMVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI-E   79 (386)
T ss_pred             CCceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC-C
Confidence            334577888888775422                        258999999999999999999999999999999977 8


Q ss_pred             CCCcEEEEcCcccccc-------c-ccccCCChhhH--------HHH------------HHHHHHHHHHHHHcCcc----
Q 029613           57 RGKLSYILDGDNLRHG-------L-NKNLGFSAEDR--------TEN------------IRRVGEVAKLFADAGLI----  104 (190)
Q Consensus        57 ~~~g~i~~~g~~~~~~-------~-~~~i~~~~~~~--------~~~------------~~~~~~~~~~~~~~~~~----  104 (190)
                      |++|.|.++|+++..-       + +..++++.|..        .++            ..+-....+++...|+.    
T Consensus        80 pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~  159 (386)
T COG4175          80 PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD  159 (386)
T ss_pred             CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh
Confidence            9999999999986420       0 11122222210        011            01112233455556664    


Q ss_pred             eeecccCccHHHHH-HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHH
Q 029613          105 CIASLISPYRKDRD-ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLA  153 (190)
Q Consensus       105 ~~~~~lS~g~kqr~-iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~  153 (190)
                      .++.+|||||+||. +|||++.+|+++  +||||||+|||--+....+-+
T Consensus       160 ~yp~eLSGGMqQRVGLARAla~~~~Il--LMDEaFSALDPLIR~~mQdeL  207 (386)
T COG4175         160 KYPNELSGGMQQRVGLARALANDPDIL--LMDEAFSALDPLIRTEMQDEL  207 (386)
T ss_pred             cCcccccchHHHHHHHHHHHccCCCEE--EecCchhhcChHHHHHHHHHH
Confidence            35899999999996 999999999999  999999999998766554433

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.94  E-value=2.1e-27  Score=216.18  Aligned_cols=149  Identities=24%  Similarity=0.263  Sum_probs=115.3

Q ss_pred             cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      ++++|++++|++  .++++++||++++|+.++|+|+||||||||+++|+|++ ++.+|.|.+||.++..    .++..++
T Consensus       464 I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~l~~~~~~~lr~~i~  542 (694)
T TIGR03375       464 IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY-QPTEGSVLLDGVDIRQIDPADLRRNIG  542 (694)
T ss_pred             EEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEhhhCCHHHHHhccE
Confidence            688999999963  56999999999999999999999999999999999977 8899999999987653    3344556


Q ss_pred             CChhh-------HHHHHHHH------HHHHHHHHHc-----------Ccc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613           79 FSAED-------RTENIRRV------GEVAKLFADA-----------GLI----CIASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        79 ~~~~~-------~~~~~~~~------~~~~~~~~~~-----------~~~----~~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      +.+|+       ..+++...      .++...+...           |+.    +....+||||||| ++||+++.+|++
T Consensus       543 ~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~i  622 (694)
T TIGR03375       543 YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPI  622 (694)
T ss_pred             EECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            66554       22332210      1111111111           111    1245699999999 799999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +  +|||||++||+...+.+++.+++.
T Consensus       623 l--iLDE~Ts~LD~~te~~i~~~l~~~  647 (694)
T TIGR03375       623 L--LLDEPTSAMDNRSEERFKDRLKRW  647 (694)
T ss_pred             E--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence            9  999999999999999999888764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.94  E-value=3.7e-27  Score=208.29  Aligned_cols=150  Identities=19%  Similarity=0.181  Sum_probs=112.0

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCcEEEEc------------------
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILD------------------   65 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g~i~~~------------------   65 (190)
                      |+++|++++|+++.+++++||++.+|++++|+||||||||||+|+|+|++. ++.+|.|.++                  
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~   80 (520)
T TIGR03269         1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE   80 (520)
T ss_pred             CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence            468999999988889999999999999999999999999999999999763 5788999886                  


Q ss_pred             -----Ccccc-------c-------ccccccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcce
Q 029613           66 -----GDNLR-------H-------GLNKNLGFSAED---------RTENIRR------------VGEVAKLFADAGLIC  105 (190)
Q Consensus        66 -----g~~~~-------~-------~~~~~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~~  105 (190)
                           |.++.       .       ..+..++|.+++         ..+++..            ...+..++...++..
T Consensus        81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~  160 (520)
T TIGR03269        81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH  160 (520)
T ss_pred             ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence                 22110       0       011123332221         1122211            012334455555532


Q ss_pred             ----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          106 ----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       106 ----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                          .+..||+||+|| .+||+++.+|+++  +|||||++||+..++.+.+.+++.
T Consensus       161 ~~~~~~~~LSgGq~qrv~iA~al~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~l  214 (520)
T TIGR03269       161 RITHIARDLSGGEKQRVVLARQLAKEPFLF--LADEPTGTLDPQTAKLVHNALEEA  214 (520)
T ss_pred             hhhcCcccCCHHHHHHHHHHHHHhcCCCEE--EeeCCcccCCHHHHHHHHHHHHHH
Confidence                377899999999 6999999999999  999999999999999998888764

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=5.6e-27  Score=207.59  Aligned_cols=148  Identities=18%  Similarity=0.195  Sum_probs=110.7

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-ccccccccc----C
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-LRHGLNKNL----G   78 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-~~~~~~~~i----~   78 (190)
                      ||+++|++++|++.++++++||++.+|++++|+||||||||||+|+|+|++ ++.+|.|.+++.. +.. +.+..    .
T Consensus         1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~~i~~-~~q~~~~~~~   78 (530)
T PRK15064          1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDL-EPSAGNVSLDPNERLGK-LRQDQFAFEE   78 (530)
T ss_pred             CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCCCEEEE-EeccCCcCCC
Confidence            478999999999888999999999999999999999999999999999987 7788999988632 110 00000    0


Q ss_pred             CChhhHHH--------------------------------HH---------HHHHHHHHHHHHcCcc-----eeecccCc
Q 029613           79 FSAEDRTE--------------------------------NI---------RRVGEVAKLFADAGLI-----CIASLISP  112 (190)
Q Consensus        79 ~~~~~~~~--------------------------------~~---------~~~~~~~~~~~~~~~~-----~~~~~lS~  112 (190)
                      +...+...                                ..         ..-..+..++...++.     ..+..||+
T Consensus        79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg  158 (530)
T PRK15064         79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAP  158 (530)
T ss_pred             CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCH
Confidence            00000000                                00         0001233344555553     23677999


Q ss_pred             cHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          113 YRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       113 g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      ||+|| .+|++++.+|+++  +|||||++||+..++.+.+.+++
T Consensus       159 Gq~qrv~lA~aL~~~p~lL--lLDEPt~~LD~~~~~~l~~~l~~  200 (530)
T PRK15064        159 GWKLRVLLAQALFSNPDIL--LLDEPTNNLDINTIRWLEDVLNE  200 (530)
T ss_pred             HHHHHHHHHHHHhcCCCEE--EEcCCCcccCHHHHHHHHHHHHh
Confidence            99999 6999999999999  99999999999999999999875

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.4e-27  Score=197.04  Aligned_cols=151  Identities=20%  Similarity=0.137  Sum_probs=114.6

Q ss_pred             ccccCcceeccC--ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCccccc------
Q 029613            4 VGNSTNIFWQES--PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRH------   71 (190)
Q Consensus         4 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~------   71 (190)
                      +++++|++++|.  ...+|+++||++++|++++|+|+||||||||+++|+|+...    +.+|.|.++|.++..      
T Consensus        80 ~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~  159 (329)
T PRK14257         80 VFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSL  159 (329)
T ss_pred             eEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence            678999999995  35799999999999999999999999999999999997732    468999999988742      


Q ss_pred             ccccccCCChhh-------HHHHHHHH--------H-----HHHHHHHHcCc--------ceeecccCccHHHH-HHHHH
Q 029613           72 GLNKNLGFSAED-------RTENIRRV--------G-----EVAKLFADAGL--------ICIASLISPYRKDR-DACRA  122 (190)
Q Consensus        72 ~~~~~i~~~~~~-------~~~~~~~~--------~-----~~~~~~~~~~~--------~~~~~~lS~g~kqr-~iara  122 (190)
                      .++..++|.+++       ..+++...        .     .....+...++        ...+..||+||+|| .+|||
T Consensus       160 ~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARA  239 (329)
T PRK14257        160 ELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARA  239 (329)
T ss_pred             hhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHH
Confidence            123334444433       22333210        0     01222333332        23467799999999 69999


Q ss_pred             hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++.+|+++  +|||||++||....+.+.+.+++.
T Consensus       240 l~~~p~Il--LLDEPts~LD~~~~~~i~~~i~~l  271 (329)
T PRK14257        240 IALEPEVL--LMDEPTSALDPIATAKIEELILEL  271 (329)
T ss_pred             HHhCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            99999999  999999999999999999888754

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.94  E-value=3.7e-27  Score=212.22  Aligned_cols=150  Identities=17%  Similarity=0.156  Sum_probs=114.0

Q ss_pred             cccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc--------
Q 029613            3 TVGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR--------   70 (190)
Q Consensus         3 ~~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~--------   70 (190)
                      +||+++|++++|+.    .++++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|..+.        
T Consensus        11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll-~p~~G~i~~~g~~~~~~~~~~~~   89 (623)
T PRK10261         11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL-EQAGGLVQCDKMLLRRRSRQVIE   89 (623)
T ss_pred             ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCeEEEECCEEeccccccccc
Confidence            47999999999962    47999999999999999999999999999999999988 678899988774220        


Q ss_pred             -----c----cc-ccccCCChhh----------HHHHHHH-------------HHHHHHHHHHcCcc-------eeeccc
Q 029613           71 -----H----GL-NKNLGFSAED----------RTENIRR-------------VGEVAKLFADAGLI-------CIASLI  110 (190)
Q Consensus        71 -----~----~~-~~~i~~~~~~----------~~~~~~~-------------~~~~~~~~~~~~~~-------~~~~~l  110 (190)
                           .    .. ...++|..++          ..+++..             ...+..++..+++.       ..+..|
T Consensus        90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L  169 (623)
T PRK10261         90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL  169 (623)
T ss_pred             cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence                 0    00 1123333221          1122211             01233455566662       347889


Q ss_pred             CccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          111 SPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       111 S~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      |+||+|| .||||++.+|+++  +|||||++||+..++.+.+.+++
T Consensus       170 SgGq~QRv~iA~AL~~~P~lL--llDEPt~~LD~~~~~~l~~ll~~  213 (623)
T PRK10261        170 SGGMRQRVMIAMALSCRPAVL--IADEPTTALDVTIQAQILQLIKV  213 (623)
T ss_pred             CHHHHHHHHHHHHHhCCCCEE--EEeCCCCccCHHHHHHHHHHHHH
Confidence            9999999 6999999999999  99999999999999888888776

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.94  E-value=2.9e-27  Score=210.77  Aligned_cols=149  Identities=21%  Similarity=0.266  Sum_probs=113.7

Q ss_pred             cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      ++++|++++|.+  .++++++||++++|+.++|+|+||||||||+++|+|++ ++.+|.|.++|.++..    ..+..++
T Consensus       331 i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~~~~G~I~i~g~~i~~~~~~~~~~~i~  409 (571)
T TIGR02203       331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-EPDSGQILLDGHDLADYTLASLRRQVA  409 (571)
T ss_pred             EEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeEEECCEeHHhcCHHHHHhhce
Confidence            678999999964  56899999999999999999999999999999999987 8899999999977642    2233445


Q ss_pred             CChhh-------HHHHHHHH-------HHHH---------HHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613           79 FSAED-------RTENIRRV-------GEVA---------KLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        79 ~~~~~-------~~~~~~~~-------~~~~---------~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      |.+++       ..+++...       .++.         ..+...  |+.    +....+||||||| ++||+++.+|+
T Consensus       410 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~  489 (571)
T TIGR02203       410 LVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAP  489 (571)
T ss_pred             EEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            55544       22332210       0111         112211  121    1235699999999 79999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++  +|||||++||....+.+++.+++.
T Consensus       490 il--lLDEpts~LD~~~~~~i~~~L~~~  515 (571)
T TIGR02203       490 IL--ILDEATSALDNESERLVQAALERL  515 (571)
T ss_pred             EE--EEeCccccCCHHHHHHHHHHHHHH
Confidence            99  999999999999999999988763

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.94  E-value=3.9e-27  Score=208.15  Aligned_cols=151  Identities=13%  Similarity=0.181  Sum_probs=114.3

Q ss_pred             cccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc-Ccc---ccc--
Q 029613            3 TVGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD-GDN---LRH--   71 (190)
Q Consensus         3 ~~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~-g~~---~~~--   71 (190)
                      +|++++|++++|++     ..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++ |.+   +..  
T Consensus       278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~~g~~~~~~~~~~  356 (520)
T TIGR03269       278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL-EPTSGEVNVRVGDEWVDMTKPG  356 (520)
T ss_pred             ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEEecCCccccccccc
Confidence            37899999999942     56999999999999999999999999999999999987 7789999995 532   110  


Q ss_pred             -----ccccccCCChhh--------HHHHHHH-----------HHHHHHHHHHcCcc---------eeecccCccHHHH-
Q 029613           72 -----GLNKNLGFSAED--------RTENIRR-----------VGEVAKLFADAGLI---------CIASLISPYRKDR-  117 (190)
Q Consensus        72 -----~~~~~i~~~~~~--------~~~~~~~-----------~~~~~~~~~~~~~~---------~~~~~lS~g~kqr-  117 (190)
                           ..+..++|.+++        ..+++..           -..+..++...++.         ..+..||+||+|| 
T Consensus       357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv  436 (520)
T TIGR03269       357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRV  436 (520)
T ss_pred             hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHH
Confidence                 011223443332        1222211           01233445555553         2367899999999 


Q ss_pred             HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          118 DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       118 ~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+||+++.+|+++  +|||||++||+..++.+.+.+++.
T Consensus       437 ~laral~~~p~lL--llDEPt~~LD~~~~~~l~~~l~~l  473 (520)
T TIGR03269       437 ALAQVLIKEPRIV--ILDEPTGTMDPITKVDVTHSILKA  473 (520)
T ss_pred             HHHHHHhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            6999999999999  999999999999999999998753

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.94  E-value=1e-26  Score=184.18  Aligned_cols=143  Identities=18%  Similarity=0.212  Sum_probs=104.7

Q ss_pred             ccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--------ccccc
Q 029613            6 NSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--------GLNKN   76 (190)
Q Consensus         6 ~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--------~~~~~   76 (190)
                      .+.|+.++|+ ...+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..        ..+..
T Consensus         2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   80 (218)
T cd03290           2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM-QTLEGKVHWSNKNESEPSFEATRSRNRYS   80 (218)
T ss_pred             eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCeEEECCcccccccccccchhhcce
Confidence            4678999996 567999999999999999999999999999999999987 7789999999875421        01122


Q ss_pred             cCCChhh-------HHHHHHHH-----HHHHHHHHHcCc---------------ceeecccCccHHHH-HHHHHhCCCCC
Q 029613           77 LGFSAED-------RTENIRRV-----GEVAKLFADAGL---------------ICIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        77 i~~~~~~-------~~~~~~~~-----~~~~~~~~~~~~---------------~~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      ++|.+++       ..+++...     ..........++               ...+..+|+||+|| .+||+++.+|+
T Consensus        81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~  160 (218)
T cd03290          81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN  160 (218)
T ss_pred             EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence            3333322       11222110     011111111111               12356799999999 69999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHH
Q 029613          129 FIEVFMNMPLELCEARDPKGLYK  151 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~  151 (190)
                      ++  +|||||++||...++.+++
T Consensus       161 il--llDEPt~~LD~~~~~~l~~  181 (218)
T cd03290         161 IV--FLDDPFSALDIHLSDHLMQ  181 (218)
T ss_pred             EE--EEeCCccccCHHHHHHHHH
Confidence            99  9999999999999888876

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.94  E-value=6.9e-27  Score=216.62  Aligned_cols=149  Identities=22%  Similarity=0.250  Sum_probs=114.1

Q ss_pred             ccccCcceeccCcc---ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613            4 VGNSTNIFWQESPI---GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN   76 (190)
Q Consensus         4 ~l~~~~l~~~~~~~---~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~   76 (190)
                      .++++|++|+|+++   .+|+++||.+++|++++|+|+|||||||++++|.+++ +|.+|+|++||.++..    +++..
T Consensus       350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfy-dP~~G~V~idG~di~~~~~~~lr~~  428 (1228)
T KOG0055|consen  350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFY-DPTSGEVLIDGEDIRNLNLKWLRSQ  428 (1228)
T ss_pred             ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhc-CCCCceEEEcCccchhcchHHHHhh
Confidence            47899999999865   5899999999999999999999999999999999977 8999999999998754    34555


Q ss_pred             cCCChhh-------HHHHHHH---------HHHHH----------HHHHHcCc--ceeecccCccHHHH-HHHHHhCCCC
Q 029613           77 LGFSAED-------RTENIRR---------VGEVA----------KLFADAGL--ICIASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        77 i~~~~~~-------~~~~~~~---------~~~~~----------~~~~~~~~--~~~~~~lS~g~kqr-~iarall~~~  127 (190)
                      ++.+.|+       ..+++..         +.+.+          .+.+....  .+-...|||||||| +||||++++|
T Consensus       429 iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P  508 (1228)
T KOG0055|consen  429 IGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNP  508 (1228)
T ss_pred             cCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCC
Confidence            5655554       1222211         11111          11111111  11245699999999 7999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      ++|  +||||||+||....+.+.+.+.+
T Consensus       509 ~IL--LLDEaTSaLD~~se~~Vq~ALd~  534 (1228)
T KOG0055|consen  509 KIL--LLDEATSALDAESERVVQEALDK  534 (1228)
T ss_pred             CEE--EecCcccccCHHHHHHHHHHHHH
Confidence            999  99999999999998877777765

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.94  E-value=3.7e-27  Score=210.97  Aligned_cols=149  Identities=18%  Similarity=0.240  Sum_probs=113.3

Q ss_pred             cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      ++++|++++|++ .++++++||++++|+.++|+|+||||||||+++|+|++ +|.+|.|.++|.++..    ..+..++|
T Consensus       335 I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~i~~  413 (588)
T PRK13657        335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-DPQSGRILIDGTDIRTVTRASLRRNIAV  413 (588)
T ss_pred             EEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence            678999999965 57999999999999999999999999999999999977 7889999999977643    22334444


Q ss_pred             Chhh-------HHHHHHH-------------HH--HHHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCeE
Q 029613           80 SAED-------RTENIRR-------------VG--EVAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        80 ~~~~-------~~~~~~~-------------~~--~~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      .+++       .++++..             +.  .+...+...  ++.    +....+||||+|| ++||+++++|+++
T Consensus       414 v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~il  493 (588)
T PRK13657        414 VFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPIL  493 (588)
T ss_pred             EecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            4443       1222211             00  111222211  221    1245699999999 7999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +|||||++||+...+.+++.+++.
T Consensus       494 --iLDEpts~LD~~t~~~i~~~l~~~  517 (588)
T PRK13657        494 --ILDEATSALDVETEAKVKAALDEL  517 (588)
T ss_pred             --EEeCCccCCCHHHHHHHHHHHHHH
Confidence              999999999999999999888763

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.94  E-value=7.2e-27  Score=206.86  Aligned_cols=150  Identities=16%  Similarity=0.189  Sum_probs=115.3

Q ss_pred             cccccCcceeccC-----------ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613            3 TVGNSTNIFWQES-----------PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH   71 (190)
Q Consensus         3 ~~l~~~~l~~~~~-----------~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~   71 (190)
                      +|++++|+++.|+           .+.+++++||++++|++++|+||||||||||+|+|+|++ + .+|.|+++|.++..
T Consensus       274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-~~G~i~~~g~~i~~  351 (529)
T PRK15134        274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-N-SQGEIWFDGQPLHN  351 (529)
T ss_pred             CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-C-CCcEEEECCEEccc
Confidence            3789999999995           357999999999999999999999999999999999976 4 78999999976532


Q ss_pred             c-------cccccCCChhh----------HHHHHHH--------------HHHHHHHHHHcCcc-----eeecccCccHH
Q 029613           72 G-------LNKNLGFSAED----------RTENIRR--------------VGEVAKLFADAGLI-----CIASLISPYRK  115 (190)
Q Consensus        72 ~-------~~~~i~~~~~~----------~~~~~~~--------------~~~~~~~~~~~~~~-----~~~~~lS~g~k  115 (190)
                      .       .+..++|.+++          ..+++..              -..+..++..+++.     ..+..||+||+
T Consensus       352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~  431 (529)
T PRK15134        352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR  431 (529)
T ss_pred             cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence            0       12223443332          1121111              01223445555553     23678999999


Q ss_pred             HH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          116 DR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       116 qr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      || .+||+++.+|+++  +|||||++||+..++.+++.+++.
T Consensus       432 qrv~la~al~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~  471 (529)
T PRK15134        432 QRIAIARALILKPSLI--ILDEPTSSLDKTVQAQILALLKSL  471 (529)
T ss_pred             HHHHHHHHHhCCCCEE--EeeCCccccCHHHHHHHHHHHHHH
Confidence            99 6999999999999  999999999999999999999864

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.1e-26  Score=209.69  Aligned_cols=150  Identities=19%  Similarity=0.176  Sum_probs=112.8

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc----cccc----cc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL----RHGL----NK   75 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~----~~~~----~~   75 (190)
                      ||.++|++++|+++.+++++||++.+|++++|+||||||||||+|+|+|.+ ++.+|.|.+++...    ....    ..
T Consensus         1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~-~pd~G~I~~~~~~~i~~~~q~~~~~~~~   79 (638)
T PRK10636          1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI-SADGGSYTFPGNWQLAWVNQETPALPQP   79 (638)
T ss_pred             CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCCCEEEEEecCCCCCCCC
Confidence            578999999999999999999999999999999999999999999999976 78899999887531    1000    01


Q ss_pred             ccCCChhhHH------H------------HHH----H---------HHHHHHHHHHcCcc-----eeecccCccHHHH-H
Q 029613           76 NLGFSAEDRT------E------------NIR----R---------VGEVAKLFADAGLI-----CIASLISPYRKDR-D  118 (190)
Q Consensus        76 ~i~~~~~~~~------~------------~~~----~---------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~  118 (190)
                      .+++..+...      .            ...    .         -..+..++..+++.     ..+..||||++|| .
T Consensus        80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~  159 (638)
T PRK10636         80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN  159 (638)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHH
Confidence            1112111100      0            000    0         01223345555553     2367799999999 6


Q ss_pred             HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          119 ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       119 iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +|++++.+|+++  +|||||++||......+.+.+++-
T Consensus       160 LA~aL~~~P~lL--LLDEPtn~LD~~~~~~L~~~L~~~  195 (638)
T PRK10636        160 LAQALICRSDLL--LLDEPTNHLDLDAVIWLEKWLKSY  195 (638)
T ss_pred             HHHHHccCCCEE--EEcCCCCcCCHHHHHHHHHHHHhC
Confidence            999999999999  999999999999999999998863

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.94  E-value=1e-26  Score=209.74  Aligned_cols=150  Identities=17%  Similarity=0.160  Sum_probs=112.2

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----ccccccC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKNLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~i~   78 (190)
                      ||+++|++++|++..+++++||++.+|++++|+||||||||||+|+|+|++ ++.+|.|.+++.....     ......+
T Consensus         3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~-~p~~G~I~~~~~~~~~~l~q~~~~~~~~   81 (635)
T PRK11147          3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV-LLDDGRIIYEQDLIVARLQQDPPRNVEG   81 (635)
T ss_pred             EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeEEEeCCCCEEEEeccCCCCCCCC
Confidence            789999999999889999999999999999999999999999999999977 7889999988742110     0011111


Q ss_pred             CChhhH--------------------------HHHHHHH----------------HHHHHHHHHcCcc--eeecccCccH
Q 029613           79 FSAEDR--------------------------TENIRRV----------------GEVAKLFADAGLI--CIASLISPYR  114 (190)
Q Consensus        79 ~~~~~~--------------------------~~~~~~~----------------~~~~~~~~~~~~~--~~~~~lS~g~  114 (190)
                      +..+..                          .+++...                ..+..++..+++.  ..+..||+|+
T Consensus        82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGe  161 (635)
T PRK11147         82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGW  161 (635)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHH
Confidence            111110                          0000000                1122333444442  2367899999


Q ss_pred             HHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          115 KDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       115 kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +|| .+||+++.+|+++  ||||||++||....+.+.+.+++-
T Consensus       162 kqRv~LAraL~~~P~lL--LLDEPt~~LD~~~~~~L~~~L~~~  202 (635)
T PRK11147        162 LRKAALGRALVSNPDVL--LLDEPTNHLDIETIEWLEGFLKTF  202 (635)
T ss_pred             HHHHHHHHHHhcCCCEE--EEcCCCCccCHHHHHHHHHHHHhC
Confidence            999 6999999999999  999999999999999999999864

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.94  E-value=7.1e-27  Score=207.51  Aligned_cols=170  Identities=24%  Similarity=0.225  Sum_probs=121.4

Q ss_pred             ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      .++++|++++|++  .++++++||++++|+.++|+|+||||||||+++|+|.+ ++.+|.|.++|.++..    ..+..+
T Consensus       316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~i~~~~~~~~~~~i  394 (544)
T TIGR01842       316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-PPTSGSVRLDGADLKQWDRETFGKHI  394 (544)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEehhhCCHHHHhhhe
Confidence            3788999999954  57999999999999999999999999999999999987 7889999999977542    122233


Q ss_pred             CCChhh-------HHHHHHH---------H------HHHHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613           78 GFSAED-------RTENIRR---------V------GEVAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        78 ~~~~~~-------~~~~~~~---------~------~~~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      +|.+++       ..+++..         +      ......+...  ++.    .....+|+||||| ++||+++.+|+
T Consensus       395 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~  474 (544)
T TIGR01842       395 GYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK  474 (544)
T ss_pred             EEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence            333332       1222210         0      0111222222  221    2256799999999 79999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc--cccccccCCCCCCce
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL--SIFSFCYYEKLIPRT  177 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~p~~  177 (190)
                      ++  +|||||++||....+.+.+.+++...++.+  -+.+. .+.+...|.
T Consensus       475 il--ilDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~-~~~~~~~d~  522 (544)
T TIGR01842       475 LV--VLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR-PSLLGCVDK  522 (544)
T ss_pred             EE--EEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCC-HHHHHhCCE
Confidence            99  999999999999999999988764323333  44444 444444443

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=9.5e-27  Score=175.02  Aligned_cols=164  Identities=20%  Similarity=0.199  Sum_probs=120.8

Q ss_pred             CCcccccCcceecc-----Cc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC--ccccc
Q 029613            1 MATVGNSTNIFWQE-----SP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG--DNLRH   71 (190)
Q Consensus         1 m~~~l~~~~l~~~~-----~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g--~~~~~   71 (190)
                      |...+.++|++|+|     ++  .++++++||+++.|||++|-|||||||||++|+|.+-+ .+++|.|++.-  +.+..
T Consensus         1 m~~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY-~~d~G~I~v~H~g~~vdl   79 (235)
T COG4778           1 MPTPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY-LPDEGQILVRHEGEWVDL   79 (235)
T ss_pred             CCceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc-CCCCceEEEEeCcchhhh
Confidence            66788999999998     23  36899999999999999999999999999999999977 78889888753  22210


Q ss_pred             ----------ccccccCCChhhHHHH-----HH---------------HHHHHHHHHHHcCcce-----eecccCccHHH
Q 029613           72 ----------GLNKNLGFSAEDRTEN-----IR---------------RVGEVAKLFADAGLIC-----IASLISPYRKD  116 (190)
Q Consensus        72 ----------~~~~~i~~~~~~~~~~-----~~---------------~~~~~~~~~~~~~~~~-----~~~~lS~g~kq  116 (190)
                                --+..+||..+-.+-.     +.               .-.....++.++++-+     .++.+|||++|
T Consensus        80 ~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQ  159 (235)
T COG4778          80 VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQ  159 (235)
T ss_pred             hccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchhe
Confidence                      0111234433321100     00               0012233444444421     27789999999


Q ss_pred             H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCccccccc
Q 029613          117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSF  167 (190)
Q Consensus       117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~  167 (190)
                      | .|||.++-+-+++  +|||||+.||...+.-+.+++++.+..|...+-++
T Consensus       160 RVNIaRgfivd~pIL--LLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIF  209 (235)
T COG4778         160 RVNIARGFIVDYPIL--LLDEPTASLDATNRAVVVELIREAKARGAALVGIF  209 (235)
T ss_pred             ehhhhhhhhccCceE--EecCCcccccccchHHHHHHHHHHHhcCceEEEee
Confidence            9 5999999999999  99999999999999999999999988886654444

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.2e-26  Score=173.58  Aligned_cols=167  Identities=16%  Similarity=0.177  Sum_probs=124.5

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccc---cc----
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLN---KN----   76 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~---~~----   76 (190)
                      +++.+|++.+.+...++.++||.+.+||++.|.||||||||||+|+|+|++ .|.+|.|++++..+.....   ..    
T Consensus         2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl-~p~~G~v~~~~~~i~~~~~~~~~~l~yL   80 (209)
T COG4133           2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLL-RPDAGEVYWQGEPIQNVRESYHQALLYL   80 (209)
T ss_pred             cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc-CCCCCeEEecCCCCccchhhHHHHHHHh
Confidence            688999999999999999999999999999999999999999999999988 7899999999877643111   11    


Q ss_pred             ---cCCChh-hHHHHHHHHHH---------HHHHHHHcCcc---ee-ecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613           77 ---LGFSAE-DRTENIRRVGE---------VAKLFADAGLI---CI-ASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL  138 (190)
Q Consensus        77 ---i~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~---~~-~~~lS~g~kqr-~iarall~~~~il~vllDEP~  138 (190)
                         -++..+ ...|+++....         +.+.+..+++.   +. +..||-||++| ++||-++..++++  +||||+
T Consensus        81 GH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLW--iLDEP~  158 (209)
T COG4133          81 GHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLW--ILDEPF  158 (209)
T ss_pred             hccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCce--eecCcc
Confidence               111111 13344444322         22334444443   33 67799999999 6999999999999  999999


Q ss_pred             hhhhhcChHHHHHHHH-cCCCCCcccccccccCCCCC
Q 029613          139 ELCEARDPKGLYKLAR-AGKIKGLLSIFSFCYYEKLI  174 (190)
Q Consensus       139 ~~ld~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~  174 (190)
                      ++||...+..+-..+. +.+..|..-.++- -+.|..
T Consensus       159 taLDk~g~a~l~~l~~~H~~~GGiVllttH-q~l~~~  194 (209)
T COG4133         159 TALDKEGVALLTALMAAHAAQGGIVLLTTH-QPLPIA  194 (209)
T ss_pred             cccCHHHHHHHHHHHHHHhcCCCEEEEecC-CccCCC
Confidence            9999999888777664 3455565555554 444443

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.94  E-value=7.3e-27  Score=207.56  Aligned_cols=148  Identities=16%  Similarity=0.130  Sum_probs=113.8

Q ss_pred             ccccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            4 VGNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      .++++|++++|++ .++++++||++++|+.++|+|+||||||||+++|+|++ ++.+|.|.++|.++..    ..+..++
T Consensus       322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~  400 (547)
T PRK10522        322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY-QPQSGEILLDGKPVTAEQPEDYRKLFS  400 (547)
T ss_pred             eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCCCCHHHHhhheE
Confidence            3678999999964 56999999999999999999999999999999999977 7899999999987653    2344556


Q ss_pred             CChhhHH-------HHH--HHHHHHHHHHHHcCccee---------ecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613           79 FSAEDRT-------ENI--RRVGEVAKLFADAGLICI---------ASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE  139 (190)
Q Consensus        79 ~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~---------~~~lS~g~kqr-~iarall~~~~il~vllDEP~~  139 (190)
                      +.+++..       ++.  ..-..+...+...++...         ...+||||+|| ++||+++.+|+++  +|||||+
T Consensus       401 ~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~il--ilDE~ts  478 (547)
T PRK10522        401 AVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDIL--LLDEWAA  478 (547)
T ss_pred             EEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEE--EEECCCC
Confidence            6555421       110  000112223333333211         34699999999 7999999999999  9999999


Q ss_pred             hhhhcChHHHHHHHH
Q 029613          140 LCEARDPKGLYKLAR  154 (190)
Q Consensus       140 ~ld~~~~~~~~~~~~  154 (190)
                      +||+...+.+++.+.
T Consensus       479 ~LD~~~~~~i~~~l~  493 (547)
T PRK10522        479 DQDPHFRREFYQVLL  493 (547)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999988887775

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.94  E-value=5.8e-27  Score=176.69  Aligned_cols=124  Identities=22%  Similarity=0.281  Sum_probs=102.4

Q ss_pred             cCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHH
Q 029613            7 STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTE   86 (190)
Q Consensus         7 ~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~   86 (190)
                      ++++++.|.+..++++++|++.+|++++|+|+||||||||+++|+|.+ ++..|.+.+++.++...       ...... 
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~-~~~~G~i~~~~~~~~~~-------~~~~~~-   72 (157)
T cd00267           2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL-KPTSGEILIDGKDIAKL-------PLEELR-   72 (157)
T ss_pred             eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEEcccC-------CHHHHH-
Confidence            578999998888999999999999999999999999999999999987 67899999999766421       000000 


Q ss_pred             HHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           87 NIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                                  .   ...+...+|+||+|| .++|+++.+|+++  +|||||++||.+.+..+++.+++-
T Consensus        73 ------------~---~i~~~~qlS~G~~~r~~l~~~l~~~~~i~--ilDEp~~~lD~~~~~~l~~~l~~~  126 (157)
T cd00267          73 ------------R---RIGYVPQLSGGQRQRVALARALLLNPDLL--LLDEPTSGLDPASRERLLELLREL  126 (157)
T ss_pred             ------------h---ceEEEeeCCHHHHHHHHHHHHHhcCCCEE--EEeCCCcCCCHHHHHHHHHHHHHH
Confidence                        0   011112299999999 6999999999999  999999999999999999888763

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.94  E-value=1.5e-26  Score=196.74  Aligned_cols=146  Identities=20%  Similarity=0.202  Sum_probs=112.3

Q ss_pred             CcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc----cccc----c---c-cc
Q 029613            8 TNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD----NLRH----G---L-NK   75 (190)
Q Consensus         8 ~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~----~~~~----~---~-~~   75 (190)
                      .++.++|+...+++++||++++|++++|+|+||||||||+|+|+|++ ++.+|+|+++|+    ++..    .   . +.
T Consensus        28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~-~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~  106 (382)
T TIGR03415        28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN-PVSRGSVLVKDGDGSIDVANCDAATLRRLRTH  106 (382)
T ss_pred             HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEECCEecccccccCCHHHHHHHhcC
Confidence            45677889899999999999999999999999999999999999977 788999999985    3211    0   0 12


Q ss_pred             ccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613           76 NLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        76 ~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      .++|.+++        ..+++..            ......++...++..    .+..||+||+|| .+||+++.+|+++
T Consensus       107 ~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~IL  186 (382)
T TIGR03415       107 RVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADIL  186 (382)
T ss_pred             CEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            23333332        2233221            112334555566643    467899999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +|||||++||+..+..+++.+.+.
T Consensus       187 --LlDEPts~LD~~~r~~l~~~L~~l  210 (382)
T TIGR03415       187 --LMDEPFSALDPLIRTQLQDELLEL  210 (382)
T ss_pred             --EEECCCccCCHHHHHHHHHHHHHH
Confidence              999999999999999999988764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.94  E-value=1.3e-26  Score=206.75  Aligned_cols=149  Identities=22%  Similarity=0.238  Sum_probs=113.5

Q ss_pred             cccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            5 GNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         5 l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      ++++|++++|+.   ..+++++||++++|+.++|+|+||||||||+++|+|++ ++.+|.|.++|.++..    ..+..+
T Consensus       338 i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~-~p~~G~I~i~g~~i~~~~~~~~~~~i  416 (576)
T TIGR02204       338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY-DPQSGRILLDGVDLRQLDPAELRARM  416 (576)
T ss_pred             EEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEEEECCEEHHhcCHHHHHHhc
Confidence            678999999964   56999999999999999999999999999999999987 7889999999977642    223344


Q ss_pred             CCChhh-------HHHHHHHH------HHH---------HHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613           78 GFSAED-------RTENIRRV------GEV---------AKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        78 ~~~~~~-------~~~~~~~~------~~~---------~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      +|.+++       ..+|+...      .++         ...+...  ++.    +....+||||+|| .+||+++.+|+
T Consensus       417 ~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~  496 (576)
T TIGR02204       417 ALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAP  496 (576)
T ss_pred             eEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence            555544       22222210      011         1122221  221    2245699999999 79999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++  +|||||++||+...+.+++.+++.
T Consensus       497 il--ilDEpts~lD~~~~~~i~~~l~~~  522 (576)
T TIGR02204       497 IL--LLDEATSALDAESEQLVQQALETL  522 (576)
T ss_pred             eE--EEeCcccccCHHHHHHHHHHHHHH
Confidence            99  999999999999999999888764

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.9e-26  Score=204.19  Aligned_cols=151  Identities=15%  Similarity=0.061  Sum_probs=113.9

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccccccc--CCC
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNL--GFS   80 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i--~~~   80 (190)
                      ++++++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.+++..-..-+.+..  .+.
T Consensus       318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~p~~G~i~~~~~~~i~~~~q~~~~~~~  396 (530)
T PRK15064        318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL-EPDSGTVKWSENANIGYYAQDHAYDFE  396 (530)
T ss_pred             ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCceEEEEEcccccccCC
Confidence            3789999999998888999999999999999999999999999999999977 7889999998743111011110  010


Q ss_pred             h-hhHHHHHHHH-------HHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcCh
Q 029613           81 A-EDRTENIRRV-------GEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDP  146 (190)
Q Consensus        81 ~-~~~~~~~~~~-------~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~  146 (190)
                      . ....+++...       ..+..++...++.     ..+..||+||+|| .+||+++.+|+++  +|||||++||...+
T Consensus       397 ~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~ll--lLDEPt~~LD~~~~  474 (530)
T PRK15064        397 NDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVL--VMDEPTNHMDMESI  474 (530)
T ss_pred             CCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEE--EEcCCCCCCCHHHH
Confidence            0 0111111110       1233344555542     2478899999999 6999999999999  99999999999999


Q ss_pred             HHHHHHHHcC
Q 029613          147 KGLYKLARAG  156 (190)
Q Consensus       147 ~~~~~~~~~~  156 (190)
                      +.+.+.+++-
T Consensus       475 ~~l~~~l~~~  484 (530)
T PRK15064        475 ESLNMALEKY  484 (530)
T ss_pred             HHHHHHHHHC
Confidence            9999999874

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3.6e-26  Score=196.60  Aligned_cols=170  Identities=21%  Similarity=0.157  Sum_probs=122.0

Q ss_pred             ccccCcceeccCcc--ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----ccccc
Q 029613            4 VGNSTNIFWQESPI--GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----LNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~~~--~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----~~~~i   77 (190)
                      .++++|++|+|.+.  ++++|+||++++||.++|+|+|||||||++..|+|.+ ++.+|+|.++|.++..-    ++..+
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~-~~~~G~i~~~g~~~~~l~~~~~~e~i  414 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW-DPQQGSITLNGVEIASLDEQALRETI  414 (573)
T ss_pred             eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc-CCCCCeeeECCcChhhCChhhHHHHH
Confidence            47899999999764  5999999999999999999999999999999999988 88999999999776431    11122


Q ss_pred             CCChhh-------HHHHHHH------HHHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCCCC
Q 029613           78 GFSAED-------RTENIRR------VGEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        78 ~~~~~~-------~~~~~~~------~~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      ++..|.       .++|++.      -.++...++..++.               +-...+||||+|| ++||+++++.+
T Consensus       415 ~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dap  494 (573)
T COG4987         415 SVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAP  494 (573)
T ss_pred             hhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCC
Confidence            222221       1122110      01222233333322               2256699999999 79999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHc-CCCCCcccccccccCCCCCCce
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARA-GKIKGLLSIFSFCYYEKLIPRT  177 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~p~~  177 (190)
                      ++  +|||||.+||+...+++.+.+.+ .+=|++..+++. -..-++-|-
T Consensus       495 l~--lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHr-L~~le~~dr  541 (573)
T COG4987         495 LW--LLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHR-LRGLERMDR  541 (573)
T ss_pred             eE--EecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecc-cccHhhcCE
Confidence            99  99999999999999999988865 222344455555 444444443

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.93  E-value=2.8e-26  Score=204.05  Aligned_cols=150  Identities=15%  Similarity=0.080  Sum_probs=109.4

Q ss_pred             cccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-cccccccccC-C
Q 029613            3 TVGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-LRHGLNKNLG-F   79 (190)
Q Consensus         3 ~~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-~~~~~~~~i~-~   79 (190)
                      .|++++|++++|+ ++++++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.+++.. +.. +.+... +
T Consensus         3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~-~p~~G~i~~~~~~~i~~-v~Q~~~~~   80 (552)
T TIGR03719         3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD-KEFNGEARPAPGIKVGY-LPQEPQLD   80 (552)
T ss_pred             EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCCCEEEE-EeccCCCC
Confidence            3789999999998 778999999999999999999999999999999999977 7788998886531 110 000000 0


Q ss_pred             ChhhHHHHHHH-----------------------------------H-------------HHHHHHHHHcCc---ceeec
Q 029613           80 SAEDRTENIRR-----------------------------------V-------------GEVAKLFADAGL---ICIAS  108 (190)
Q Consensus        80 ~~~~~~~~~~~-----------------------------------~-------------~~~~~~~~~~~~---~~~~~  108 (190)
                      ......+++..                                   +             ..+...+...++   ...+.
T Consensus        81 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  160 (552)
T TIGR03719        81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVT  160 (552)
T ss_pred             CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchh
Confidence            00000011000                                   0             011122233333   22467


Q ss_pred             ccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          109 LISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       109 ~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .||+||+|| .+||+++.+|+++  +|||||++||+...+.+.+.+++-
T Consensus       161 ~LSgGqkqrv~la~al~~~p~lL--LLDEPt~~LD~~~~~~l~~~L~~~  207 (552)
T TIGR03719       161 KLSGGERRRVALCRLLLSKPDML--LLDEPTNHLDAESVAWLEQHLQEY  207 (552)
T ss_pred             hcCHHHHHHHHHHHHHhcCCCEE--EEcCCCCCCChHHHHHHHHHHHhC
Confidence            899999999 6999999999999  999999999999999999998864

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.93  E-value=1.4e-26  Score=223.34  Aligned_cols=149  Identities=17%  Similarity=0.145  Sum_probs=116.6

Q ss_pred             cccCcceeccC---ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC------------------------
Q 029613            5 GNSTNIFWQES---PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR------------------------   57 (190)
Q Consensus         5 l~~~~l~~~~~---~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~------------------------   57 (190)
                      |+++||+|+|+   ..++|+++||++++|++++|+|+||||||||+++|.|++ ++                        
T Consensus      1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~y-dp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265       1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFY-DLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred             EEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhC-CCcccccccccccccccccccccccc
Confidence            67899999996   347999999999999999999999999999999999987 44                        


Q ss_pred             ------------------------------CCcEEEEcCccccc----ccccccCCChhh-------HHHHHHHH-----
Q 029613           58 ------------------------------GKLSYILDGDNLRH----GLNKNLGFSAED-------RTENIRRV-----   91 (190)
Q Consensus        58 ------------------------------~~g~i~~~g~~~~~----~~~~~i~~~~~~-------~~~~~~~~-----   91 (190)
                                                    .+|.|.+||.++..    .++..++|++|+       .++++...     
T Consensus      1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at 1324 (1466)
T PTZ00265       1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDAT 1324 (1466)
T ss_pred             ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCC
Confidence                                          58999999988753    355667777765       23333221     


Q ss_pred             -HHHHHHHHHcCc-----------c----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHH
Q 029613           92 -GEVAKLFADAGL-----------I----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLAR  154 (190)
Q Consensus        92 -~~~~~~~~~~~~-----------~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~  154 (190)
                       .++.......++           .    +....|||||||| +||||++++|+++  +||||||+||....+.+.+.+.
T Consensus      1325 ~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~IL--LLDEaTSaLD~~sE~~I~~~L~ 1402 (1466)
T PTZ00265       1325 REDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKIL--LLDEATSSLDSNSEKLIEKTIV 1402 (1466)
T ss_pred             HHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEE--EEeCcccccCHHHHHHHHHHHH
Confidence             111111111111           1    1245699999999 7999999999999  9999999999999999988887


Q ss_pred             cC
Q 029613          155 AG  156 (190)
Q Consensus       155 ~~  156 (190)
                      +.
T Consensus      1403 ~~ 1404 (1466)
T PTZ00265       1403 DI 1404 (1466)
T ss_pred             HH
Confidence            64

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.93  E-value=1.3e-26  Score=210.92  Aligned_cols=149  Identities=20%  Similarity=0.233  Sum_probs=114.9

Q ss_pred             cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      ++++|++++|++  ..+++++||++++|+.++|+|+||||||||+++|+|++ ++.+|.|.+||.++..    .++..++
T Consensus       456 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~-~p~~G~I~idg~~i~~~~~~~~r~~i~  534 (694)
T TIGR01846       456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-TPQHGQVLVDGVDLAIADPAWLRRQMG  534 (694)
T ss_pred             EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEehhhCCHHHHHHhCe
Confidence            688999999953  56999999999999999999999999999999999977 7889999999987643    2344455


Q ss_pred             CChhh-------HHHHHHHH------HHH---------HHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613           79 FSAED-------RTENIRRV------GEV---------AKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        79 ~~~~~-------~~~~~~~~------~~~---------~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      |.+++       ..+++...      .++         ...+...  |+.    +....+||||+|| ++||+++.+|++
T Consensus       535 ~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~i  614 (694)
T TIGR01846       535 VVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRI  614 (694)
T ss_pred             EEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence            55544       22332210      111         1112111  221    1245699999999 799999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +  +|||||++||+...+.+++.+++.
T Consensus       615 l--ilDEpts~LD~~~~~~i~~~l~~~  639 (694)
T TIGR01846       615 L--IFDEATSALDYESEALIMRNMREI  639 (694)
T ss_pred             E--EEECCCcCCCHHHHHHHHHHHHHH
Confidence            9  999999999999999999999864

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.93  E-value=2.1e-26  Score=183.97  Aligned_cols=133  Identities=23%  Similarity=0.175  Sum_probs=99.1

Q ss_pred             ccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChh--------hHHHHHHH-
Q 029613           20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE--------DRTENIRR-   90 (190)
Q Consensus        20 l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~--------~~~~~~~~-   90 (190)
                      ++++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++..... ..+|.++        ...+++.. 
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~-~~~~v~q~~~l~~~~tv~e~l~~~   78 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA-QPTSGGVILEGKQITEPGP-DRMVVFQNYSLLPWLTVRENIALA   78 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCCh-hheEEecCcccCCCCCHHHHHHHH
Confidence            57899999999999999999999999999999987 7889999999976532100 0011111        11122111 


Q ss_pred             -------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHH
Q 029613           91 -------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKL  152 (190)
Q Consensus        91 -------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~  152 (190)
                                   ...+..++...++..    .+..+|+||+|| .+||+++.+|+++  +|||||++||+..++.+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll--lLDEPt~gLD~~~~~~l~~~  156 (230)
T TIGR01184        79 VDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVL--LLDEPFGALDALTRGNLQEE  156 (230)
T ss_pred             HHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEE--EEcCCCcCCCHHHHHHHHHH
Confidence                         011233444455532    367799999999 6999999999999  99999999999999999988


Q ss_pred             HHcC
Q 029613          153 ARAG  156 (190)
Q Consensus       153 ~~~~  156 (190)
                      +++-
T Consensus       157 l~~~  160 (230)
T TIGR01184       157 LMQI  160 (230)
T ss_pred             HHHH
Confidence            8753

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.9e-26  Score=200.21  Aligned_cols=159  Identities=22%  Similarity=0.243  Sum_probs=116.0

Q ss_pred             ccCcceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCCC
Q 029613            6 NSTNIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGFS   80 (190)
Q Consensus         6 ~~~~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~~   80 (190)
                      ..+|+++.|+.. ++++++||++++|+.++|+|+||||||||+++|+|.+ ++..|+|.++|.+...    ..++.+++.
T Consensus       322 ~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~-~~~~G~I~vng~~l~~l~~~~~~k~i~~v  400 (559)
T COG4988         322 SLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL-APTQGEIRVNGIDLRDLSPEAWRKQISWV  400 (559)
T ss_pred             eecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCccccccCHHHHHhHeeee
Confidence            445999999754 8999999999999999999999999999999999987 7899999999977643    233344444


Q ss_pred             hhh-------HHHHHHH------HHHHHHHHHHcCcc----------e----eecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613           81 AED-------RTENIRR------VGEVAKLFADAGLI----------C----IASLISPYRKDR-DACRAMLPDSNFIEV  132 (190)
Q Consensus        81 ~~~-------~~~~~~~------~~~~~~~~~~~~~~----------~----~~~~lS~g~kqr-~iarall~~~~il~v  132 (190)
                      ++.       .++|+..      -.++.+.++..++.          .    -...+||||+|| ++|||++.+++++  
T Consensus       401 ~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~--  478 (559)
T COG4988         401 SQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLL--  478 (559)
T ss_pred             CCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEE--
Confidence            433       2333311      01222222222222          1    245599999999 6999999999999  


Q ss_pred             EeeCCchhhhhcChHHHHHHHHcC-CCCCccccccc
Q 029613          133 FMNMPLELCEARDPKGLYKLARAG-KIKGLLSIFSF  167 (190)
Q Consensus       133 llDEP~~~ld~~~~~~~~~~~~~~-~~~~~~~~~~~  167 (190)
                      ++||||++||.+..+.+.+.+.+. +-+.+.-+++.
T Consensus       479 llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHr  514 (559)
T COG4988         479 LLDEPTAHLDAETEQIILQALQELAKQKTVLVITHR  514 (559)
T ss_pred             EecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcC
Confidence            999999999999988887777653 22333344444

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=6.1e-26  Score=169.61  Aligned_cols=155  Identities=18%  Similarity=0.207  Sum_probs=119.9

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----------ccc
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----------GLN   74 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----------~~~   74 (190)
                      |+++++++.||..++|-|++|+...|+.+.++||||+|||||+|.|+- +.-+.+|+..+-+..+..          .++
T Consensus         3 irv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnl-le~p~sg~l~ia~~~fd~s~~~~~k~i~~lr   81 (242)
T COG4161           3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNL-LEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR   81 (242)
T ss_pred             eEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHH-HhCCCCCeEEecccccccccCccHHHHHHHH
Confidence            789999999999999999999999999999999999999999999985 557888988887654321          244


Q ss_pred             cccCCChhhH--------HHHH-------------HHHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613           75 KNLGFSAEDR--------TENI-------------RRVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        75 ~~i~~~~~~~--------~~~~-------------~~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      .++|+..++.        .+++             ....+..+++....+.    .++..+|||++|| +||||+|.+|+
T Consensus        82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq  161 (242)
T COG4161          82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ  161 (242)
T ss_pred             HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence            4555555441        1111             0011223344444443    3477899999999 69999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                      ++  ++||||++||++-..++.+.+++..-.|.+
T Consensus       162 vl--lfdeptaaldpeitaqvv~iikel~~tgit  193 (242)
T COG4161         162 VL--LFDEPTAALDPEITAQIVSIIKELAETGIT  193 (242)
T ss_pred             EE--eecCcccccCHHHHHHHHHHHHHHHhcCce
Confidence            99  999999999999999999999986655554

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.93  E-value=1.3e-26  Score=207.41  Aligned_cols=149  Identities=19%  Similarity=0.197  Sum_probs=112.4

Q ss_pred             cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      ++++|++++|++ .++++++||++++|++++|+||||||||||+++|+|.+ ++.+|.|.++|.++..    ..+..++|
T Consensus       335 i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~  413 (585)
T TIGR01192       335 VEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY-DPTVGQILIDGIDINTVTRESLRKSIAT  413 (585)
T ss_pred             EEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC-CCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence            678999999975 57899999999999999999999999999999999977 7899999999977542    12233344


Q ss_pred             Chhh-------HHHHHHH---------HHH------HHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCeE
Q 029613           80 SAED-------RTENIRR---------VGE------VAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        80 ~~~~-------~~~~~~~---------~~~------~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      .+++       ..+++..         +..      +...+...  ++.    .....+||||||| .+||+++.+|+++
T Consensus       414 v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~il  493 (585)
T TIGR01192       414 VFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPIL  493 (585)
T ss_pred             EccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            3333       1222211         000      11111111  111    2256699999999 7999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +|||||++||....+.+++.+++.
T Consensus       494 --ilDEpts~LD~~~~~~i~~~l~~~  517 (585)
T TIGR01192       494 --VLDEATSALDVETEARVKNAIDAL  517 (585)
T ss_pred             --EEECCccCCCHHHHHHHHHHHHHH
Confidence              999999999999999999988764

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.93  E-value=1.9e-26  Score=205.23  Aligned_cols=146  Identities=16%  Similarity=0.105  Sum_probs=112.3

Q ss_pred             cccCcceeccCcc-----ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccc
Q 029613            5 GNSTNIFWQESPI-----GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNK   75 (190)
Q Consensus         5 l~~~~l~~~~~~~-----~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~   75 (190)
                      ++++|++++|++.     ++++++||++++|++++|+||||||||||+++|+|.+ +|.+|.|.++|.++..    .++.
T Consensus       338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~-~p~~G~i~~~g~~i~~~~~~~~~~  416 (555)
T TIGR01194       338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY-IPQEGEILLDGAAVSADSRDDYRD  416 (555)
T ss_pred             EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHh
Confidence            6789999999752     5899999999999999999999999999999999977 8899999999987753    2334


Q ss_pred             ccCCChhhH-------HHHHH---HHHHHHHHHHHcCccee----------ecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613           76 NLGFSAEDR-------TENIR---RVGEVAKLFADAGLICI----------ASLISPYRKDR-DACRAMLPDSNFIEVFM  134 (190)
Q Consensus        76 ~i~~~~~~~-------~~~~~---~~~~~~~~~~~~~~~~~----------~~~lS~g~kqr-~iarall~~~~il~vll  134 (190)
                      .+++.+++.       .++..   .-.++...+...++...          ...+||||||| ++||+++.+|+++  +|
T Consensus       417 ~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~il--il  494 (555)
T TIGR01194       417 LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPIL--LF  494 (555)
T ss_pred             hCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEE--EE
Confidence            455555441       11110   01122233344443321          24699999999 7999999999999  99


Q ss_pred             eCCchhhhhcChHHHHHHH
Q 029613          135 NMPLELCEARDPKGLYKLA  153 (190)
Q Consensus       135 DEP~~~ld~~~~~~~~~~~  153 (190)
                      ||||++||++..+.+++.+
T Consensus       495 DE~ts~LD~~~~~~i~~~l  513 (555)
T TIGR01194       495 DEWAADQDPAFKRFFYEEL  513 (555)
T ss_pred             eCCccCCCHHHHHHHHHHH
Confidence            9999999999999988755

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PLN03211 ABC transporter G-25; Provisional

Probab=99.93  E-value=2.5e-26  Score=207.58  Aligned_cols=154  Identities=19%  Similarity=0.183  Sum_probs=115.9

Q ss_pred             ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC--CcEEEEcCcccccccccccCCChhh
Q 029613            6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG--KLSYILDGDNLRHGLNKNLGFSAED   83 (190)
Q Consensus         6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~--~g~i~~~g~~~~~~~~~~i~~~~~~   83 (190)
                      ..+|++++|+++.+++++|+++++||+++|+||||||||||+++|+|.+ +++  +|+|.++|.++.......++|.+++
T Consensus        70 ~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~-~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~  148 (659)
T PLN03211         70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRI-QGNNFTGTILANNRKPTKQILKRTGFVTQD  148 (659)
T ss_pred             ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCceeEEEEECCEECchhhccceEEECcc
Confidence            3567888998889999999999999999999999999999999999977 443  8999999987543222234444432


Q ss_pred             --------HHHHHHH---------------HHHHHHHHHHcCcce---------eecccCccHHHH-HHHHHhCCCCCeE
Q 029613           84 --------RTENIRR---------------VGEVAKLFADAGLIC---------IASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        84 --------~~~~~~~---------------~~~~~~~~~~~~~~~---------~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                              ..+++..               ...+..++...++..         .+..+|+||||| .+|++++.+|+++
T Consensus       149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL  228 (659)
T PLN03211        149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL  228 (659)
T ss_pred             cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence                    1222211               011233445555532         245699999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                        +|||||++||......+.+.+++...+|.+
T Consensus       229 --lLDEPtsgLD~~~~~~l~~~L~~l~~~g~T  258 (659)
T PLN03211        229 --ILDEPTSGLDATAAYRLVLTLGSLAQKGKT  258 (659)
T ss_pred             --EEeCCCCCcCHHHHHHHHHHHHHHHhCCCE
Confidence              999999999999999999998864334544

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.3e-26  Score=201.97  Aligned_cols=152  Identities=14%  Similarity=0.193  Sum_probs=113.3

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~   78 (190)
                      +++++|+++.+  ..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++...     .+..++
T Consensus       250 ~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~  326 (491)
T PRK10982        250 ILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR-EKSAGTITLHGKKINNHNANEAINHGFA  326 (491)
T ss_pred             EEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC-cCCccEEEECCEECCCCCHHHHHHCCCE
Confidence            68899999874  46999999999999999999999999999999999977 78899999999765321     112233


Q ss_pred             CChhhHH----------------HHHHH-------------HHHHHHHHHHcCc-----ceeecccCccHHHH-HHHHHh
Q 029613           79 FSAEDRT----------------ENIRR-------------VGEVAKLFADAGL-----ICIASLISPYRKDR-DACRAM  123 (190)
Q Consensus        79 ~~~~~~~----------------~~~~~-------------~~~~~~~~~~~~~-----~~~~~~lS~g~kqr-~iaral  123 (190)
                      |.+++..                +++..             -..+...+...++     ...+..||+||+|| .+||++
T Consensus       327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al  406 (491)
T PRK10982        327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWL  406 (491)
T ss_pred             EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHH
Confidence            3332210                00100             0112223333333     22477899999999 599999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      +.+|+++  +|||||++||...++.+++.+++....|
T Consensus       407 ~~~p~il--lLDEPt~gLD~~~~~~~~~~l~~l~~~~  441 (491)
T PRK10982        407 LTQPEIL--MLDEPTRGIDVGAKFEIYQLIAELAKKD  441 (491)
T ss_pred             hcCCCEE--EEcCCCcccChhHHHHHHHHHHHHHHCC
Confidence            9999999  9999999999999999999887643334

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.93  E-value=2.4e-26  Score=205.18  Aligned_cols=149  Identities=19%  Similarity=0.190  Sum_probs=111.9

Q ss_pred             cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      ++++|++++|+.  ..+++++||++++|++++|+||||||||||+++|+|++ +|.+|.|.++|.++..    ..+..++
T Consensus       314 I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~-~p~~G~i~~~g~~~~~~~~~~~~~~i~  392 (569)
T PRK10789        314 LDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-DVSEGDIRFHDIPLTKLQLDSWRSRLA  392 (569)
T ss_pred             EEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEEECCEEHhhCCHHHHHhheE
Confidence            678899999964  56999999999999999999999999999999999987 7899999999987642    1223334


Q ss_pred             CChhh-------HHHHHHHH------HHHHHHHHHc-----------Ccc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613           79 FSAED-------RTENIRRV------GEVAKLFADA-----------GLI----CIASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        79 ~~~~~-------~~~~~~~~------~~~~~~~~~~-----------~~~----~~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      +.+++       ..+++...      .++...+...           |+.    .....+|+||+|| .+||+++.+|++
T Consensus       393 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~i  472 (569)
T PRK10789        393 VVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEI  472 (569)
T ss_pred             EEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            43332       22222110      0111111111           111    1245699999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +  +|||||++||+...+.+.+.+++.
T Consensus       473 l--llDEpts~LD~~~~~~i~~~l~~~  497 (569)
T PRK10789        473 L--ILDDALSAVDGRTEHQILHNLRQW  497 (569)
T ss_pred             E--EEECccccCCHHHHHHHHHHHHHH
Confidence            9  999999999999999999998764

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.93  E-value=4.6e-26  Score=198.77  Aligned_cols=148  Identities=18%  Similarity=0.186  Sum_probs=109.1

Q ss_pred             ccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCC
Q 029613            4 VGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFS   80 (190)
Q Consensus         4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~   80 (190)
                      |++++|+++.|+.   +.+|+++||++.+|++++|+|+||||||||+++|+|++ ++.+|.|.++|.+......  ..+.
T Consensus        21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl-~P~sGeI~I~G~~~~i~~~--~~l~   97 (549)
T PRK13545         21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT-MPNKGTVDIKGSAALIAIS--SGLN   97 (549)
T ss_pred             eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCceEEEECCEeeeEEec--cccC
Confidence            6777788777765   46899999999999999999999999999999999987 7889999999865211000  0111


Q ss_pred             hh-hHHHHHH-----------HH-HHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhh
Q 029613           81 AE-DRTENIR-----------RV-GEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCE  142 (190)
Q Consensus        81 ~~-~~~~~~~-----------~~-~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld  142 (190)
                      +. ...+++.           .. ..+..++...++.    ..+..||+||+|| .+||+++.+|+++  +|||||++||
T Consensus        98 ~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LL--LLDEPTsgLD  175 (549)
T PRK13545         98 GQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDIL--VIDEALSVGD  175 (549)
T ss_pred             CCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEE--EEECCcccCC
Confidence            10 1111110           00 1122233444442    2367899999999 6999999999999  9999999999


Q ss_pred             hcChHHHHHHHHcC
Q 029613          143 ARDPKGLYKLARAG  156 (190)
Q Consensus       143 ~~~~~~~~~~~~~~  156 (190)
                      +..++.+++.+++.
T Consensus       176 ~~sr~~LlelL~el  189 (549)
T PRK13545        176 QTFTKKCLDKMNEF  189 (549)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888764

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.93  E-value=2.4e-26  Score=224.44  Aligned_cols=150  Identities=13%  Similarity=0.136  Sum_probs=119.6

Q ss_pred             ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccC
Q 029613            4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~   78 (190)
                      +++++|++|+|++  +.+++++||++++||+++|+|+||||||||+|+|+|++ .+.+|.|.++|.++...   .+..++
T Consensus      1937 ~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll-~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257      1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDT-TVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred             eEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEECCEECcchHHHHhhhEE
Confidence            7899999999985  57999999999999999999999999999999999987 78999999999876421   233455


Q ss_pred             CChhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613           79 FSAED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVF  133 (190)
Q Consensus        79 ~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vl  133 (190)
                      |.++.        ..+++...            ..+..++...++..    .+..+|+||||| .+|+|++.+|+++  +
T Consensus      2016 y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VL--L 2093 (2272)
T TIGR01257      2016 YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLV--L 2093 (2272)
T ss_pred             EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEE--E
Confidence            55543        12222211            11223445555543    367899999999 6999999999999  9


Q ss_pred             eeCCchhhhhcChHHHHHHHHcC
Q 029613          134 MNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       134 lDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |||||++||+..++.+++.+++.
T Consensus      2094 LDEPTsGLDp~sr~~l~~lL~~l 2116 (2272)
T TIGR01257      2094 LDEPTTGMDPQARRMLWNTIVSI 2116 (2272)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999988764

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.8e-25  Score=168.85  Aligned_cols=150  Identities=19%  Similarity=0.193  Sum_probs=110.4

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-----ccc------
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-----LRH------   71 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-----~~~------   71 (190)
                      |++++.++++.|++....+++||++-|||+++|+|+||||||||+++|++.+ .|..|++.+..++     +..      
T Consensus         5 PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl-~p~~G~v~Y~~r~~~~~dl~~msEaeR   83 (258)
T COG4107           5 PLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL-TPDAGTVTYRMRDGQPRDLYTMSEAER   83 (258)
T ss_pred             cceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhccc-CCCCCeEEEEcCCCCchhHhhhchHHH
Confidence            5889999999999999999999999999999999999999999999999999 7888887765321     110      


Q ss_pred             --ccccccCCChhh--------------HHHH--------HHHH-HHHHHHHHHcCc-----ceeecccCccHHHH-HHH
Q 029613           72 --GLNKNLGFSAED--------------RTEN--------IRRV-GEVAKLFADAGL-----ICIASLISPYRKDR-DAC  120 (190)
Q Consensus        72 --~~~~~i~~~~~~--------------~~~~--------~~~~-~~~~~~~~~~~~-----~~~~~~lS~g~kqr-~ia  120 (190)
                        -++.+-++..+.              .-|.        ...+ .....++++..+     .+.+..+||||+|| .||
T Consensus        84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiA  163 (258)
T COG4107          84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIA  163 (258)
T ss_pred             HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHH
Confidence              011111222211              0010        1111 122334444322     23588899999999 699


Q ss_pred             HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      |.++..|.++  ||||||-+||......+.+.++.
T Consensus       164 RnLVt~PrLv--fMDEPTGGLDVSVQARLLDllrg  196 (258)
T COG4107         164 RNLVTRPRLV--FMDEPTGGLDVSVQARLLDLLRG  196 (258)
T ss_pred             HHhccCCceE--EecCCCCCcchhhHHHHHHHHHH
Confidence            9999999999  99999999999988887776654

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.6e-25  Score=190.99  Aligned_cols=178  Identities=16%  Similarity=0.145  Sum_probs=129.7

Q ss_pred             cccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            5 GNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      ++++|++++|+ ++++++|+||.+++|+.++|+||||+||||++|+|.+.. +..+|.|.+||+++..    .++..+|.
T Consensus       538 i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff-dv~sGsI~iDgqdIrnvt~~SLRs~IGV  616 (790)
T KOG0056|consen  538 IEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF-DVNSGSITIDGQDIRNVTQSSLRSSIGV  616 (790)
T ss_pred             EEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh-hccCceEEEcCchHHHHHHHHHHHhcCc
Confidence            68899999996 678999999999999999999999999999999999976 8899999999999854    56777888


Q ss_pred             ChhhH-------------------HHHHHHHHHHHHHHHHc---------CcceeecccCccHHHH-HHHHHhCCCCCeE
Q 029613           80 SAEDR-------------------TENIRRVGEVAKLFADA---------GLICIASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        80 ~~~~~-------------------~~~~~~~~~~~~~~~~~---------~~~~~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      +|++.                   .+....-++.+.+.++.         .+.+-...+|||+||| ++||++++.|.++
T Consensus       617 VPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iI  696 (790)
T KOG0056|consen  617 VPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSII  696 (790)
T ss_pred             ccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEE
Confidence            88761                   01111112222222211         1112355699999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcCCCCCccccc--ccccCCCCCCceEEecCCcccc
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIF--SFCYYEKLIPRTCKKKISATTR  187 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~p~~~~~~~~~~~~  187 (190)
                        +|||.||+||....+.+.+.+.+- -++.+.+-  +. ..+-.+.|+++=-.++-|+
T Consensus       697 --lLDEATSALDT~tER~IQaaL~rl-ca~RTtIVvAHR-LSTivnAD~ILvi~~G~Iv  751 (790)
T KOG0056|consen  697 --LLDEATSALDTNTERAIQAALARL-CANRTTIVVAHR-LSTIVNADLILVISNGRIV  751 (790)
T ss_pred             --EEcchhhhcCCccHHHHHHHHHHH-hcCCceEEEeee-ehheecccEEEEEeCCeEe
Confidence              999999999999988888777652 23334322  22 3444556655444444443

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.93  E-value=7.4e-26  Score=201.37  Aligned_cols=150  Identities=13%  Similarity=0.057  Sum_probs=112.0

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-ccccccccc--CC
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-LRHGLNKNL--GF   79 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-~~~~~~~~i--~~   79 (190)
                      +|++++|++++|++..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.+++.. +.. +.+..  -+
T Consensus       321 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~G~i~~~~~~~i~~-v~q~~~~~~  398 (552)
T TIGR03719       321 KVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE-QPDSGTIKIGETVKLAY-VDQSRDALD  398 (552)
T ss_pred             eEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeEEEECCceEEEE-EeCCccccC
Confidence            3789999999998888999999999999999999999999999999999977 7788999885421 110 00000  00


Q ss_pred             ChhhHHHHHHH----------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhh
Q 029613           80 SAEDRTENIRR----------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEA  143 (190)
Q Consensus        80 ~~~~~~~~~~~----------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~  143 (190)
                      ......+++..          -.....++...++.     ..+..||+||+|| .+||+++.+|+++  +|||||++||.
T Consensus       399 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~ll--lLDEPt~~LD~  476 (552)
T TIGR03719       399 PNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVL--LLDEPTNDLDV  476 (552)
T ss_pred             CCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEE--EEeCCCCCCCH
Confidence            00011111110          00122344555542     2367899999999 6999999999999  99999999999


Q ss_pred             cChHHHHHHHHcC
Q 029613          144 RDPKGLYKLARAG  156 (190)
Q Consensus       144 ~~~~~~~~~~~~~  156 (190)
                      ..++.+.+.+++-
T Consensus       477 ~~~~~l~~~l~~~  489 (552)
T TIGR03719       477 ETLRALEEALLEF  489 (552)
T ss_pred             HHHHHHHHHHHHC
Confidence            9999999999874

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.93  E-value=3.4e-26  Score=184.72  Aligned_cols=144  Identities=16%  Similarity=0.195  Sum_probs=106.7

Q ss_pred             ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCCCh
Q 029613            6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGFSA   81 (190)
Q Consensus         6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~~~   81 (190)
                      +++|+++.    .+++++||++++|++++|+|+||||||||+++|+|++ ++ +|+|.++|.++..    .....++|.+
T Consensus         2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~-~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~   75 (248)
T PRK03695          2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PG-SGSIQFAGQPLEAWSAAELARHRAYLS   75 (248)
T ss_pred             cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CC-CeEEEECCEecCcCCHHHHhhheEEec
Confidence            57888885    3899999999999999999999999999999999976 44 8999999976532    1111223332


Q ss_pred             hh--------HHHHHHH-----------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCC-------CCCeE
Q 029613           82 ED--------RTENIRR-----------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLP-------DSNFI  130 (190)
Q Consensus        82 ~~--------~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~-------~~~il  130 (190)
                      ++        ..+++..           ...+..++...++.    ..+..+|+||+|| .+||+++.       +|+++
T Consensus        76 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~ll  155 (248)
T PRK03695         76 QQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLL  155 (248)
T ss_pred             ccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEE
Confidence            22        1122111           01223344444543    2367899999999 69999997       67999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                        +|||||++||+..++.+++.+++..
T Consensus       156 --llDEPt~~LD~~~~~~l~~~L~~~~  180 (248)
T PRK03695        156 --LLDEPMNSLDVAQQAALDRLLSELC  180 (248)
T ss_pred             --EEcCCcccCCHHHHHHHHHHHHHHH
Confidence              9999999999999999999987643

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.93  E-value=8.6e-26  Score=201.09  Aligned_cols=149  Identities=13%  Similarity=0.090  Sum_probs=111.6

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-ccccccccc-CC-C
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-LRHGLNKNL-GF-S   80 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-~~~~~~~~i-~~-~   80 (190)
                      |++++|+++.|+++.+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.+++.. +.. +.+.. .+ .
T Consensus       324 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~p~~G~i~~~~~~~i~~-v~q~~~~~~~  401 (556)
T PRK11819        324 VIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE-QPDSGTIKIGETVKLAY-VDQSRDALDP  401 (556)
T ss_pred             EEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCceEEEE-EeCchhhcCC
Confidence            789999999999888999999999999999999999999999999999977 7889999885421 110 00000 00 0


Q ss_pred             hhhHHHHHHH----------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhc
Q 029613           81 AEDRTENIRR----------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEAR  144 (190)
Q Consensus        81 ~~~~~~~~~~----------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~  144 (190)
                      .....+++..          -.....++..+++.     ..+..||+||+|| .+||+++.+|+++  +|||||++||..
T Consensus       402 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll--lLDEPt~~LD~~  479 (556)
T PRK11819        402 NKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVL--LLDEPTNDLDVE  479 (556)
T ss_pred             CCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE--EEcCCCCCCCHH
Confidence            0011111110          00112344455542     2367899999999 6999999999999  999999999999


Q ss_pred             ChHHHHHHHHcC
Q 029613          145 DPKGLYKLARAG  156 (190)
Q Consensus       145 ~~~~~~~~~~~~  156 (190)
                      .++.+++.+++-
T Consensus       480 ~~~~l~~~l~~~  491 (556)
T PRK11819        480 TLRALEEALLEF  491 (556)
T ss_pred             HHHHHHHHHHhC
Confidence            999999999874

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.93  E-value=5.9e-26  Score=181.28  Aligned_cols=136  Identities=19%  Similarity=0.198  Sum_probs=101.0

Q ss_pred             cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC----CCcEEEEcCcccccc-c-ccccCCChhhH--------
Q 029613           19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR----GKLSYILDGDNLRHG-L-NKNLGFSAEDR--------   84 (190)
Q Consensus        19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~----~~g~i~~~g~~~~~~-~-~~~i~~~~~~~--------   84 (190)
                      +++++||++++|++++|+||||||||||+++|+|++ ++    .+|.|.++|.++... . ...++|.+++.        
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~   79 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLL-PPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF   79 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence            478999999999999999999999999999999987 55    799999999765321 1 11223322221        


Q ss_pred             --HHHHH----H--------HHHHHHHHHHcCcc-------eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhh
Q 029613           85 --TENIR----R--------VGEVAKLFADAGLI-------CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCE  142 (190)
Q Consensus        85 --~~~~~----~--------~~~~~~~~~~~~~~-------~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld  142 (190)
                        .+++.    .        ...+..++...++.       ..+..+|+||+|| .+||+++.+|+++  +|||||++||
T Consensus        80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vl--lLDEPt~~LD  157 (230)
T TIGR02770        80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFL--IADEPTTDLD  157 (230)
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEE--EEcCCccccC
Confidence              01110    0        01133344445543       2367799999999 6999999999999  9999999999


Q ss_pred             hcChHHHHHHHHcCC
Q 029613          143 ARDPKGLYKLARAGK  157 (190)
Q Consensus       143 ~~~~~~~~~~~~~~~  157 (190)
                      ...++.+++.+++..
T Consensus       158 ~~~~~~l~~~l~~~~  172 (230)
T TIGR02770       158 VVNQARVLKLLRELR  172 (230)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998888643

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.93  E-value=6.3e-26  Score=199.67  Aligned_cols=145  Identities=18%  Similarity=0.245  Sum_probs=110.4

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~   78 (190)
                      +++++|+++     .+++++||++.+|++++|+||||||||||+++|+|++ ++.+|+|.++|.++...     .+..++
T Consensus       257 ~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~  330 (501)
T PRK10762        257 RLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL-PRTSGYVTLDGHEVVTRSPQDGLANGIV  330 (501)
T ss_pred             EEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHHHHCCCE
Confidence            567788874     4799999999999999999999999999999999987 77899999999765321     122344


Q ss_pred             CChhh-----------HHHHHHH------------------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHh
Q 029613           79 FSAED-----------RTENIRR------------------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAM  123 (190)
Q Consensus        79 ~~~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iaral  123 (190)
                      |.+++           ..+++..                  -..+..++...++.     ..+..||+||+|| .+||++
T Consensus       331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al  410 (501)
T PRK10762        331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGL  410 (501)
T ss_pred             EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence            43332           1111110                  01233445555552     2367899999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||+..++.+++.+++-
T Consensus       411 ~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~  441 (501)
T PRK10762        411 MTRPKVL--ILDEPTRGVDVGAKKEIYQLINQF  441 (501)
T ss_pred             hhCCCEE--EEcCCCCCCCHhHHHHHHHHHHHH
Confidence            9999999  999999999999999999998874

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.93  E-value=1.1e-25  Score=203.10  Aligned_cols=149  Identities=17%  Similarity=0.154  Sum_probs=111.3

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-ccccc-CCCh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-LNKNL-GFSA   81 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-~~~~i-~~~~   81 (190)
                      +++++|++++|++.++++++||++.+|++++|+||||||||||+|+|+|.+ ++.+|.|.+ |.++.-. +.+.. .+.+
T Consensus       319 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~-~~~~~i~y~~q~~~~l~~  396 (635)
T PRK11147        319 VFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL-QADSGRIHC-GTKLEVAYFDQHRAELDP  396 (635)
T ss_pred             eEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEE-CCCcEEEEEeCcccccCC
Confidence            689999999999888999999999999999999999999999999999977 788999988 4332110 00000 0100


Q ss_pred             -hhHHHHHHH----------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhc
Q 029613           82 -EDRTENIRR----------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEAR  144 (190)
Q Consensus        82 -~~~~~~~~~----------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~  144 (190)
                       ....+++..          ...+..++..+++.     ..+..||+||||| .+|++++.+|+++  +|||||++||..
T Consensus       397 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lL--lLDEPt~~LD~~  474 (635)
T PRK11147        397 EKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLL--ILDEPTNDLDVE  474 (635)
T ss_pred             CCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEE--EEcCCCCCCCHH
Confidence             011111110          11223344444442     2367899999999 6999999999999  999999999999


Q ss_pred             ChHHHHHHHHcC
Q 029613          145 DPKGLYKLARAG  156 (190)
Q Consensus       145 ~~~~~~~~~~~~  156 (190)
                      .++.+.+.+++-
T Consensus       475 ~~~~l~~~l~~~  486 (635)
T PRK11147        475 TLELLEELLDSY  486 (635)
T ss_pred             HHHHHHHHHHhC
Confidence            999999998873

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.93  E-value=1.7e-25  Score=180.51  Aligned_cols=136  Identities=13%  Similarity=0.046  Sum_probs=96.2

Q ss_pred             cccccccccccC-----CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccC-CChhhHHHHHHH
Q 029613           17 IGRLERQKLLNQ-----KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLG-FSAEDRTENIRR   90 (190)
Q Consensus        17 ~~~l~~~sl~i~-----~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~-~~~~~~~~~~~~   90 (190)
                      .+.+++++|++.     +|++++|+||||||||||+++|+|++ ++.+|.|.++|..+.... +... +......+++..
T Consensus         7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~-~p~~G~i~~~g~~i~~~~-q~~~~~~~~tv~e~l~~   84 (246)
T cd03237           7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVL-KPDEGDIEIELDTVSYKP-QYIKADYEGTVRDLLSS   84 (246)
T ss_pred             ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCCeEEECCceEEEec-ccccCCCCCCHHHHHHH
Confidence            345666666664     79999999999999999999999977 788999999986442110 0100 000011122211


Q ss_pred             H--------HHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           91 V--------GEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        91 ~--------~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .        .....++...++.    ..+..||+||+|| .+||+++.+|+++  +|||||++||...+..+.+.+++-
T Consensus        85 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~ll--llDEPt~~LD~~~~~~l~~~l~~~  161 (246)
T cd03237          85 ITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIY--LLDEPSAYLDVEQRLMASKVIRRF  161 (246)
T ss_pred             HhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            0        0122334444443    2367799999999 6999999999999  999999999999999999888763

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.93  E-value=2.2e-25  Score=180.76  Aligned_cols=145  Identities=19%  Similarity=0.225  Sum_probs=106.6

Q ss_pred             CcceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEE-----------EcCcccccc---
Q 029613            8 TNIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI-----------LDGDNLRHG---   72 (190)
Q Consensus         8 ~~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~-----------~~g~~~~~~---   72 (190)
                      .+++++|+.. .+++++|+ +++|++++|+||||||||||+++|+|++ ++.+|.|.           ++|.++...   
T Consensus         4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~-~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~   81 (255)
T cd03236           4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKL-KPNLGKFDDPPDWDEILDEFRGSELQNYFTK   81 (255)
T ss_pred             cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEeeccccchhhhhccCchhhhhhHH
Confidence            5799999765 59999994 9999999999999999999999999987 78899985           677665321   


Q ss_pred             -ccc--ccCCChhh-----------HHHHHH---HHHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613           73 -LNK--NLGFSAED-----------RTENIR---RVGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        73 -~~~--~i~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                       .+.  .+++.++.           ...++.   .-.....++...++..    .+..+|+||+|| .+||+++.+|+++
T Consensus        82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~il  161 (255)
T cd03236          82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFY  161 (255)
T ss_pred             hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence             000  11111110           111110   0122344455555532    366799999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +|||||++||...++.+++.+++.
T Consensus       162 --llDEPts~LD~~~~~~l~~~l~~l  185 (255)
T cd03236         162 --FFDEPSSYLDIKQRLNAARLIREL  185 (255)
T ss_pred             --EEECCCCCCCHHHHHHHHHHHHHH
Confidence              999999999999999888888764

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.93  E-value=6.9e-26  Score=189.49  Aligned_cols=148  Identities=19%  Similarity=0.258  Sum_probs=113.0

Q ss_pred             ccccCcceeccC-----------ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-
Q 029613            4 VGNSTNIFWQES-----------PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-   71 (190)
Q Consensus         4 ~l~~~~l~~~~~-----------~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-   71 (190)
                      +++.+++...|.           ...+++++||++++|+.++|+|+||||||||.++|.+++ + ..|.|.|+|+++.. 
T Consensus       276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~-~-s~G~I~F~G~~i~~~  353 (534)
T COG4172         276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-P-SQGEIRFDGQDIDGL  353 (534)
T ss_pred             eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc-C-cCceEEECCcccccc
Confidence            578888887762           145789999999999999999999999999999999987 3 34999999988742 


Q ss_pred             ------cccccc---------CCChhh-H----HH----------HHHHHHHHHHHHHHcCcc-----eeecccCccHHH
Q 029613           72 ------GLNKNL---------GFSAED-R----TE----------NIRRVGEVAKLFADAGLI-----CIASLISPYRKD  116 (190)
Q Consensus        72 ------~~~~~i---------~~~~~~-~----~~----------~~~~~~~~~~~~~~~~~~-----~~~~~lS~g~kq  116 (190)
                            +++..+         ++++.- .    .|          ...+...+...+...|+.     .++.++||||||
T Consensus       354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQ  433 (534)
T COG4172         354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQ  433 (534)
T ss_pred             ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhh
Confidence                  111111         111110 0    00          012233455666677664     469999999999


Q ss_pred             H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      | +||||++.+|+++  +||||||+||...+.++.+.+++
T Consensus       434 RIAIARAliLkP~~i--~LDEPTSALD~SVQaQvv~LLr~  471 (534)
T COG4172         434 RIAIARALILKPELI--LLDEPTSALDRSVQAQVLDLLRD  471 (534)
T ss_pred             HHHHHHHHhcCCcEE--EecCCchHhhHHHHHHHHHHHHH
Confidence            9 7999999999999  99999999999999998888876

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.93  E-value=8.7e-26  Score=199.22  Aligned_cols=145  Identities=14%  Similarity=0.190  Sum_probs=110.2

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~   78 (190)
                      |++++|+++     .+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++...     .+..++
T Consensus       268 ~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~  341 (510)
T PRK15439        268 VLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR-PARGGRIMLNGKEINALSTAQRLARGLV  341 (510)
T ss_pred             eEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCcEEEECCEECCCCCHHHHHhCCcE
Confidence            678888874     2699999999999999999999999999999999977 77899999999765321     112344


Q ss_pred             CChhh-----------HHHHHHH--------------H-HHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCC
Q 029613           79 FSAED-----------RTENIRR--------------V-GEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        79 ~~~~~-----------~~~~~~~--------------~-~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~  126 (190)
                      |.+++           ..+++..              . ..+..++..+++.     ..+..||+||+|| .+||+++.+
T Consensus       342 ~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~  421 (510)
T PRK15439        342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEAS  421 (510)
T ss_pred             ECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhC
Confidence            44332           1111100              0 1123344555553     2367899999999 699999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+++  +|||||++||...++.+++.+++.
T Consensus       422 p~lL--lLDEPt~gLD~~~~~~l~~~l~~l  449 (510)
T PRK15439        422 PQLL--IVDEPTRGVDVSARNDIYQLIRSI  449 (510)
T ss_pred             CCEE--EECCCCcCcChhHHHHHHHHHHHH
Confidence            9999  999999999999999999998864

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.93  E-value=1.4e-25  Score=191.86  Aligned_cols=156  Identities=27%  Similarity=0.267  Sum_probs=124.3

Q ss_pred             ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----ccccc
Q 029613            4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----LNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----~~~~i   77 (190)
                      .+.++++++.-.+  +++++++||++.+|+.++|+||||||||||+|+|.|.+ ++.+|.|++||-++..+    +-..+
T Consensus       334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w-~p~~G~VRLDga~l~qWd~e~lG~hi  412 (580)
T COG4618         334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW-PPTSGSVRLDGADLRQWDREQLGRHI  412 (580)
T ss_pred             eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc-ccCCCcEEecchhhhcCCHHHhcccc
Confidence            4678888886643  57999999999999999999999999999999999998 88999999999888653    45568


Q ss_pred             CCChhh-------HHHHHHHHHH------H---------HHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613           78 GFSAED-------RTENIRRVGE------V---------AKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        78 ~~~~~~-------~~~~~~~~~~------~---------~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      ||.+|+       ..+|+.++.+      +         .++...+  |..    +-...||+||||| .+|||+..+|.
T Consensus       413 GYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~  492 (580)
T COG4618         413 GYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPF  492 (580)
T ss_pred             CcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCc
Confidence            899887       3566665531      1         1111111  111    1256799999999 69999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                      ++  +||||-++||......+.+.+.+-+..|-+
T Consensus       493 lv--VLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~  524 (580)
T COG4618         493 LV--VLDEPNSNLDSEGEAALAAAILAAKARGGT  524 (580)
T ss_pred             EE--EecCCCCCcchhHHHHHHHHHHHHHHcCCE
Confidence            99  999999999999999999988876666644

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.92  E-value=9.3e-26  Score=203.93  Aligned_cols=157  Identities=21%  Similarity=0.240  Sum_probs=120.1

Q ss_pred             CCcccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----
Q 029613            1 MATVGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----   72 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----   72 (190)
                      |.+|++++|++++|++    ..+++++||++++|++++|+|+||||||||+++|+|++ ++.+|++.++|+++...    
T Consensus         1 ~~~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~i~~~~~~~   79 (648)
T PRK10535          1 MTALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD-KPTSGTYRVAGQDVATLDADA   79 (648)
T ss_pred             CCcEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEcCcCCHHH
Confidence            7778999999999963    46999999999999999999999999999999999987 78899999999875420    


Q ss_pred             c----ccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHh
Q 029613           73 L----NKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAM  123 (190)
Q Consensus        73 ~----~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iaral  123 (190)
                      .    +..++|.+++        ..+++..            -......+...++..    .+..+|+||+|| .+||++
T Consensus        80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL  159 (648)
T PRK10535         80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARAL  159 (648)
T ss_pred             HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHH
Confidence            0    1223333322        1222211            112233444455433    367799999999 699999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      +.+|+++  +|||||++||...++.+.+.+++.+..+
T Consensus       160 ~~~P~lL--llDEP~~gLD~~s~~~l~~ll~~l~~~g  194 (648)
T PRK10535        160 MNGGQVI--LADEPTGALDSHSGEEVMAILHQLRDRG  194 (648)
T ss_pred             hcCCCEE--EEECCCCCCCHHHHHHHHHHHHHHHhcC
Confidence            9999999  9999999999999999999987643334

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.7e-25  Score=201.86  Aligned_cols=149  Identities=16%  Similarity=0.082  Sum_probs=112.0

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc-ccccccccc--cCCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD-NLRHGLNKN--LGFS   80 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~-~~~~~~~~~--i~~~   80 (190)
                      +|+++|+++.|++..+++++||++.+|++++|+||||||||||+++|+|.+ ++.+|.|.+++. .+.. +.+.  ..+.
T Consensus       312 ~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~~~~~~igy-~~Q~~~~~l~  389 (638)
T PRK10636        312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL-APVSGEIGLAKGIKLGY-FAQHQLEFLR  389 (638)
T ss_pred             eEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCCEEEEE-ecCcchhhCC
Confidence            689999999999888999999999999999999999999999999999987 788999988642 1210 0000  0011


Q ss_pred             hh-hHHHHHHH------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChH
Q 029613           81 AE-DRTENIRR------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPK  147 (190)
Q Consensus        81 ~~-~~~~~~~~------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~  147 (190)
                      +. ...+.+..      -..+..++..+++.     ..+..||||++|| .+|++++.+|+++  +|||||++||...++
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lL--lLDEPt~~LD~~~~~  467 (638)
T PRK10636        390 ADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLL--LLDEPTNHLDLDMRQ  467 (638)
T ss_pred             ccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE--EEcCCCCCCCHHHHH
Confidence            10 11111110      01233344444442     2477899999999 6999999999999  999999999999999


Q ss_pred             HHHHHHHcC
Q 029613          148 GLYKLARAG  156 (190)
Q Consensus       148 ~~~~~~~~~  156 (190)
                      .+.+.+++-
T Consensus       468 ~l~~~L~~~  476 (638)
T PRK10636        468 ALTEALIDF  476 (638)
T ss_pred             HHHHHHHHc
Confidence            999999873

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=99.92  E-value=1.5e-25  Score=185.04  Aligned_cols=154  Identities=58%  Similarity=0.967  Sum_probs=143.8

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceee
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIA  107 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (190)
                      -+|..+|++|.||+||||+.-+|...+...|..-+.+||+++++++..++||+++++.++++++++++.+|.+.|+..+.
T Consensus        48 frgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvcit  127 (627)
T KOG4238|consen   48 FRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVCIT  127 (627)
T ss_pred             ccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCceeee
Confidence            46889999999999999999999998866566667899999999999999999999999999999999999999999999


Q ss_pred             cccCccHHHHHHHHHhCCCC--CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEecC
Q 029613          108 SLISPYRKDRDACRAMLPDS--NFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKI  182 (190)
Q Consensus       108 ~~lS~g~kqr~iarall~~~--~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~  182 (190)
                      +.+|+.++.|.-||.+....  +|+||+.|.|+..|++|+++++|+.++.|+|+|++|+++. ||.|+.|++++|.-
T Consensus       128 sfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~gftgids~-ye~pe~~e~vl~t~  203 (627)
T KOG4238|consen  128 SFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKGFTGIDSD-YEKPETPERVLKTN  203 (627)
T ss_pred             hhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhccccccccccccc-cCCCCChhHHhhcC
Confidence            99999999999999988766  6789999999999999999999999999999999999999 99999999988754

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.92  E-value=2.3e-25  Score=206.55  Aligned_cols=148  Identities=20%  Similarity=0.224  Sum_probs=115.0

Q ss_pred             cccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            5 GNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         5 l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      ++++|++|+|+.   +++++|+||++++|+.++|+|||||||||...+|.+.+ +|..|.|.+||.++..    .++.++
T Consensus       988 I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfY-dp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen  988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFY-DPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred             EEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhc-CCCCCeEEECCcccccCCHHHHHHhc
Confidence            689999999975   45899999999999999999999999999999999977 8899999999998754    355566


Q ss_pred             CCChhh-------HHHHHHHH------HHHHHHHHHc-----------Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613           78 GFSAED-------RTENIRRV------GEVAKLFADA-----------GLI----CIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        78 ~~~~~~-------~~~~~~~~------~~~~~~~~~~-----------~~~----~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      +++.|+       .+||+..-      .++.+.....           |..    +....|||||||| +||||++++|+
T Consensus      1067 ~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPk 1146 (1228)
T KOG0055|consen 1067 GLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPK 1146 (1228)
T ss_pred             ceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCC
Confidence            666554       23333221      1111111111           111    2367899999999 79999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +|  +|||.||+||.+..+-+.+.+.+
T Consensus      1147 IL--LLDEATSALDseSErvVQeALd~ 1171 (1228)
T KOG0055|consen 1147 IL--LLDEATSALDSESERVVQEALDR 1171 (1228)
T ss_pred             ee--eeeccchhhhhhhHHHHHHHHHH
Confidence            99  99999999999987777777665

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.92  E-value=1.4e-25  Score=216.53  Aligned_cols=149  Identities=17%  Similarity=0.193  Sum_probs=113.1

Q ss_pred             cccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc-Cccccc----ccccc
Q 029613            5 GNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD-GDNLRH----GLNKN   76 (190)
Q Consensus         5 l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~-g~~~~~----~~~~~   76 (190)
                      |+++|++++|++   .++++++||++++|++++|+||||||||||+++|+|++ +|.+|.|.++ |.++..    .++..
T Consensus       383 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~i~~g~~i~~~~~~~lr~~  461 (1466)
T PTZ00265        383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY-DPTEGDIIINDSHNLKDINLKWWRSK  461 (1466)
T ss_pred             EEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc-cCCCCeEEEeCCcchhhCCHHHHHHh
Confidence            688999999975   36999999999999999999999999999999999987 8899999994 565532    23444


Q ss_pred             cCCChhh-------HHHHHHHH----------------------------------------------------------
Q 029613           77 LGFSAED-------RTENIRRV----------------------------------------------------------   91 (190)
Q Consensus        77 i~~~~~~-------~~~~~~~~----------------------------------------------------------   91 (190)
                      +++.+++       ..+++..-                                                          
T Consensus       462 Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  541 (1466)
T PTZ00265        462 IGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNY  541 (1466)
T ss_pred             ccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccccc
Confidence            5555544       22222210                                                          


Q ss_pred             -----HHHHHHHHHcCc---------------ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHH
Q 029613           92 -----GEVAKLFADAGL---------------ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLY  150 (190)
Q Consensus        92 -----~~~~~~~~~~~~---------------~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~  150 (190)
                           .++...+...++               ...+..|||||||| +||||++.+|+++  +|||||++||+...+.+.
T Consensus       542 ~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~IL--lLDEpTSaLD~~se~~i~  619 (1466)
T PTZ00265        542 QTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKIL--ILDEATSSLDNKSEYLVQ  619 (1466)
T ss_pred             ccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEE--EEeCcccccCHHHHHHHH
Confidence                 011111111111               12256799999999 6999999999999  999999999999999999


Q ss_pred             HHHHcC
Q 029613          151 KLARAG  156 (190)
Q Consensus       151 ~~~~~~  156 (190)
                      +.+++.
T Consensus       620 ~~L~~~  625 (1466)
T PTZ00265        620 KTINNL  625 (1466)
T ss_pred             HHHHHH
Confidence            888864

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.7e-25  Score=172.65  Aligned_cols=155  Identities=19%  Similarity=0.180  Sum_probs=112.3

Q ss_pred             ccccCcceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH-hhCCCcEEEEcCcccccc-----cccc
Q 029613            4 VGNSTNIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL-YSRGKLSYILDGDNLRHG-----LNKN   76 (190)
Q Consensus         4 ~l~~~~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l-~~~~~g~i~~~g~~~~~~-----~~~~   76 (190)
                      ||+++|++.+-.++ ++|+++|+++++||+++|+||||||||||+++|+|.- +...+|.|.|+|+++..-     ++..
T Consensus         3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~G   82 (251)
T COG0396           3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAG   82 (251)
T ss_pred             eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcC
Confidence            78999999999885 9999999999999999999999999999999999964 256899999999997531     1111


Q ss_pred             cCCChhh--------HHHHHH---------------HHHHHHHHHHHcCcce------eecccCccHHHH-HHHHHhCCC
Q 029613           77 LGFSAED--------RTENIR---------------RVGEVAKLFADAGLIC------IASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        77 i~~~~~~--------~~~~~~---------------~~~~~~~~~~~~~~~~------~~~~lS~g~kqr-~iarall~~  126 (190)
                      +.+..|.        ....++               ....+...+...++..      ...-+|||+|+| +++..++.+
T Consensus        83 ifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~le  162 (251)
T COG0396          83 IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLE  162 (251)
T ss_pred             CEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcC
Confidence            1111111        011111               1112222233333322      234599999999 799999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      |++.  +||||-|+||--..+.+.+-+..-+-+|
T Consensus       163 Pkl~--ILDE~DSGLDIdalk~V~~~i~~lr~~~  194 (251)
T COG0396         163 PKLA--ILDEPDSGLDIDALKIVAEGINALREEG  194 (251)
T ss_pred             CCEE--EecCCCcCccHHHHHHHHHHHHHHhcCC
Confidence            9999  9999999999888777776666544344

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.92  E-value=3.3e-25  Score=180.56  Aligned_cols=134  Identities=18%  Similarity=0.123  Sum_probs=96.3

Q ss_pred             ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCCh-hhHHHHHHH------
Q 029613           18 GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSA-EDRTENIRR------   90 (190)
Q Consensus        18 ~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~-~~~~~~~~~------   90 (190)
                      .+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|......  ...++.. ....+++..      
T Consensus        38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~-~p~~G~I~~~g~~~~~~--~~~~~~~~~tv~enl~~~~~~~~  114 (264)
T PRK13546         38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL-SPTVGKVDRNGEVSVIA--ISAGLSGQLTGIENIEFKMLCMG  114 (264)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEeEEe--cccCCCCCCcHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999999987 78899999988521100  0001100 001111110      


Q ss_pred             -----H-HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           91 -----V-GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        91 -----~-~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                           . ..+..++...++..    .+..+|+||+|| .+|++++.+|+++  +|||||++||+..++.+++.+.+-
T Consensus       115 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iL--lLDEPt~gLD~~~~~~l~~~L~~~  189 (264)
T PRK13546        115 FKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDIL--VIDEALSVGDQTFAQKCLDKIYEF  189 (264)
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEE--EEeCccccCCHHHHHHHHHHHHHH
Confidence                 0 01112222333322    367799999999 6999999999999  999999999999999998888764

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.92  E-value=1.2e-25  Score=219.64  Aligned_cols=151  Identities=15%  Similarity=0.185  Sum_probs=119.9

Q ss_pred             ccccCcceeccC--ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccC
Q 029613            4 VGNSTNIFWQES--PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~   78 (190)
                      .|+++|++|.|+  ++.+++++||++.+|++++|+||||||||||+++|+|++ +|.+|++.++|.++...   .+..++
T Consensus       928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl-~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257       928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLL-PPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred             eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCC-CCCceEEEECCEECcchHHHHhhcEE
Confidence            578999999995  578999999999999999999999999999999999987 78899999999876421   223344


Q ss_pred             CChhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613           79 FSAED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVF  133 (190)
Q Consensus        79 ~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vl  133 (190)
                      +.+++        ..+++...            .++..++...++..    .+..||+||||| .+|+|++.+|+++  +
T Consensus      1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVL--L 1084 (2272)
T TIGR01257      1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVV--V 1084 (2272)
T ss_pred             EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE--E
Confidence            44432        12222111            12334555666543    377899999999 6999999999999  9


Q ss_pred             eeCCchhhhhcChHHHHHHHHcCC
Q 029613          134 MNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       134 lDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      |||||++||+..++.+++.+++.+
T Consensus      1085 LDEPTSGLDp~sr~~l~~lL~~l~ 1108 (2272)
T TIGR01257      1085 LDEPTSGVDPYSRRSIWDLLLKYR 1108 (2272)
T ss_pred             EECCCcCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999998753

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.92  E-value=2.7e-25  Score=198.72  Aligned_cols=148  Identities=14%  Similarity=0.062  Sum_probs=109.0

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCCh-
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSA-   81 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~-   81 (190)
                      ++++++|++++|++. .++++||++++||+++|+||||||||||+|+|+|++ ++.+|.|.++ ..+.. ..+...... 
T Consensus       339 ~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~-~p~~G~I~~~-~~i~y-~~Q~~~~~~~  414 (590)
T PRK13409        339 TLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVL-KPDEGEVDPE-LKISY-KPQYIKPDYD  414 (590)
T ss_pred             eEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEEe-eeEEE-ecccccCCCC
Confidence            368999999999865 489999999999999999999999999999999987 7788988875 11110 000000000 


Q ss_pred             hhHHHHHHHH-------HHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHH
Q 029613           82 EDRTENIRRV-------GEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGL  149 (190)
Q Consensus        82 ~~~~~~~~~~-------~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~  149 (190)
                      ....+++...       .....++..+++.    ..+..||+||+|| ++||+++.+|+++  +|||||++||...+..+
T Consensus       415 ~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~ll--LLDEPt~~LD~~~~~~l  492 (590)
T PRK13409        415 GTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLY--LLDEPSAHLDVEQRLAV  492 (590)
T ss_pred             CcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE--EEeCCccCCCHHHHHHH
Confidence            0111111110       0123344455543    2377899999999 6999999999999  99999999999999999


Q ss_pred             HHHHHcC
Q 029613          150 YKLARAG  156 (190)
Q Consensus       150 ~~~~~~~  156 (190)
                      .+.+++-
T Consensus       493 ~~~l~~l  499 (590)
T PRK13409        493 AKAIRRI  499 (590)
T ss_pred             HHHHHHH
Confidence            9988863

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.92  E-value=2.5e-25  Score=201.43  Aligned_cols=149  Identities=14%  Similarity=0.072  Sum_probs=105.7

Q ss_pred             ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChh
Q 029613            4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE   82 (190)
Q Consensus         4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~   82 (190)
                      +++++|+++.|+ +..+++++||++++|++++|+||||||||||+++|+|++ ++.+|.+.+++..-..-..++..+...
T Consensus       451 ~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~-~~~~G~i~~~~~~~i~~v~Q~~~l~~~  529 (659)
T TIGR00954       451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW-PVYGGRLTKPAKGKLFYVPQRPYMTLG  529 (659)
T ss_pred             eEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEeecCCCcEEEECCCCCCCCc
Confidence            578999999995 557999999999999999999999999999999999977 677888877643210000000000000


Q ss_pred             hHHHHHHH-------------HHHHHHHHHHcCcce-------------eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613           83 DRTENIRR-------------VGEVAKLFADAGLIC-------------IASLISPYRKDR-DACRAMLPDSNFIEVFMN  135 (190)
Q Consensus        83 ~~~~~~~~-------------~~~~~~~~~~~~~~~-------------~~~~lS~g~kqr-~iarall~~~~il~vllD  135 (190)
                      ...+++..             -.++...+...++..             ....+|+||+|| .+||+++.+|+++  +||
T Consensus       530 tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~il--lLD  607 (659)
T TIGR00954       530 TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFA--ILD  607 (659)
T ss_pred             CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEE--EEe
Confidence            01111100             011122222222211             235799999999 6999999999999  999


Q ss_pred             CCchhhhhcChHHHHHHHHc
Q 029613          136 MPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       136 EP~~~ld~~~~~~~~~~~~~  155 (190)
                      |||++||+...+.+++.+++
T Consensus       608 Epts~LD~~~~~~l~~~l~~  627 (659)
T TIGR00954       608 ECTSAVSVDVEGYMYRLCRE  627 (659)
T ss_pred             CCccCCCHHHHHHHHHHHHH
Confidence            99999999999999999886

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.7e-25  Score=196.95  Aligned_cols=146  Identities=16%  Similarity=0.163  Sum_probs=108.2

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~   78 (190)
                      ++++++++.    ..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|+++|+++...     .+..++
T Consensus       257 ~l~~~~~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~  331 (501)
T PRK11288        257 RLRLDGLKG----PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT-RRTAGQVYLDGKPIDIRSPRDAIRAGIM  331 (501)
T ss_pred             EEEEecccc----CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC-cCCCceEEECCEECCCCCHHHHHhCCCE
Confidence            356666653    25899999999999999999999999999999999987 77899999998765311     112233


Q ss_pred             CChhh-----------HHHHHHH------------------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHh
Q 029613           79 FSAED-----------RTENIRR------------------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAM  123 (190)
Q Consensus        79 ~~~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iaral  123 (190)
                      |.+++           ..+++..                  -..+..++...++.     ..+..||+||+|| .+||++
T Consensus       332 ~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al  411 (501)
T PRK11288        332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWL  411 (501)
T ss_pred             EcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHH
Confidence            33222           1111100                  01233445555552     2377899999999 599999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+|+++  +|||||++||...++.+.+.+++.
T Consensus       412 ~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~l  442 (501)
T PRK11288        412 SEDMKVI--LLDEPTRGIDVGAKHEIYNVIYEL  442 (501)
T ss_pred             ccCCCEE--EEcCCCCCCCHhHHHHHHHHHHHH
Confidence            9999999  999999999999999999888664

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=3.1e-25  Score=177.43  Aligned_cols=136  Identities=18%  Similarity=0.209  Sum_probs=99.0

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccCCCh------------
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLGFSA------------   81 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~~~~------------   81 (190)
                      ..+++|+||++++|++++++|+|||||||++|+|.|++ .|.+|.|.++|.+....   .-..+++..            
T Consensus        37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll-~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~  115 (325)
T COG4586          37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL-LPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA  115 (325)
T ss_pred             hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc-ccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence            45789999999999999999999999999999999988 78999999998653210   000001100            


Q ss_pred             hhH------------HHHHHHHHHHHHHHHHcC-cceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChH
Q 029613           82 EDR------------TENIRRVGEVAKLFADAG-LICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPK  147 (190)
Q Consensus        82 ~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~  147 (190)
                      .+-            .+..+++..+.+++..-+ +...+..+|.|||.| ++|.+|+++|+++  ||||||-+||...+.
T Consensus       116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VL--fLDEpTvgLDV~aq~  193 (325)
T COG4586         116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVL--FLDEPTVGLDVNAQA  193 (325)
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEE--EecCCccCcchhHHH
Confidence            000            111222233333332222 223477899999999 5999999999999  999999999999998


Q ss_pred             HHHHHHHc
Q 029613          148 GLYKLARA  155 (190)
Q Consensus       148 ~~~~~~~~  155 (190)
                      .+.+.+++
T Consensus       194 ~ir~Flke  201 (325)
T COG4586         194 NIREFLKE  201 (325)
T ss_pred             HHHHHHHH
Confidence            88888876

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=3e-25  Score=167.04  Aligned_cols=147  Identities=22%  Similarity=0.227  Sum_probs=111.7

Q ss_pred             ccccCcceeccC----ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------
Q 029613            4 VGNSTNIFWQES----PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-------   72 (190)
Q Consensus         4 ~l~~~~l~~~~~----~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-------   72 (190)
                      +|+++++++.-+    ...+|++++|.+++||.++|+||||||||||+-.++|+ ..+++|+|++.|.++..-       
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL-d~~ssGeV~l~G~~L~~ldEd~rA~   84 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL-DDPSSGEVRLLGQPLHKLDEDARAA   84 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC-CCCCCceEEEcCcchhhcCHHHHHH
Confidence            788999998764    46799999999999999999999999999999999995 488999999999876420       


Q ss_pred             c-ccccCCChhhH--------HHHH------------HHHHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCC
Q 029613           73 L-NKNLGFSAEDR--------TENI------------RRVGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        73 ~-~~~i~~~~~~~--------~~~~------------~~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~  126 (190)
                      + ..+++++.+..        .|+.            ........++...|+.    .++..||||++|| +||||++..
T Consensus        85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~  164 (228)
T COG4181          85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR  164 (228)
T ss_pred             hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence            1 11234433321        1110            0112233455666653    4699999999999 699999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHH
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLA  153 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~  153 (190)
                      |+++  |.||||-+||...-+++.+.+
T Consensus       165 P~vL--fADEPTGNLD~~Tg~~iaDLl  189 (228)
T COG4181         165 PDVL--FADEPTGNLDRATGDKIADLL  189 (228)
T ss_pred             CCEE--eccCCCCCcchhHHHHHHHHH
Confidence            9999  999999999998766655443

>PLN03130 ABC transporter C family member; Provisional

Probab=99.92  E-value=1.5e-25  Score=218.08  Aligned_cols=155  Identities=18%  Similarity=0.197  Sum_probs=118.4

Q ss_pred             ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      .|+++|++++|.+  .++|+|+||++++||.+||+|+||||||||+++|.|++ ++.+|.|.+||.++..    .++..+
T Consensus      1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~-~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130       1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV-ELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred             cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCEecccCCHHHHHhcc
Confidence            3789999999964  36999999999999999999999999999999999977 7889999999988753    344555


Q ss_pred             CCChhh-------HHHHHHHH-----HHHHHHHHHc-----------Ccce----eecccCccHHHH-HHHHHhCCCCCe
Q 029613           78 GFSAED-------RTENIRRV-----GEVAKLFADA-----------GLIC----IASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        78 ~~~~~~-------~~~~~~~~-----~~~~~~~~~~-----------~~~~----~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      ++.+|+       .++|+...     .++...++..           |+..    -...+|+||||| ++|||++++|++
T Consensus      1316 siVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I 1395 (1622)
T PLN03130       1316 GIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI 1395 (1622)
T ss_pred             EEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence            655554       22232110     1111111111           2211    245699999999 799999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                      +  +|||||+++|....+.+.+.+++. .++.|
T Consensus      1396 L--ILDEATSaLD~~Te~~Iq~~I~~~-~~~~T 1425 (1622)
T PLN03130       1396 L--VLDEATAAVDVRTDALIQKTIREE-FKSCT 1425 (1622)
T ss_pred             E--EEECCCCCCCHHHHHHHHHHHHHH-CCCCE
Confidence            9  999999999999999999998863 34544

>PLN03232 ABC transporter C family member; Provisional

Probab=99.92  E-value=1.3e-25  Score=217.66  Aligned_cols=154  Identities=16%  Similarity=0.174  Sum_probs=117.3

Q ss_pred             cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      |+++|++++|.+  .++|+|+||++++||.++|+|+||||||||+++|.|++ ++.+|.|.+||.++..    .++..++
T Consensus      1235 I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~-~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232       1235 IKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV-ELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred             EEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCceEEECCEEhhhCCHHHHHhhcE
Confidence            789999999953  46999999999999999999999999999999999977 7899999999988743    3444555


Q ss_pred             CChhh-------HHHHHHHH-----HHHHHHHHHc-----------Ccce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613           79 FSAED-------RTENIRRV-----GEVAKLFADA-----------GLIC----IASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        79 ~~~~~-------~~~~~~~~-----~~~~~~~~~~-----------~~~~----~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      +.+|+       .++|+.-.     .++.+.+...           |+..    -...+|+||||| ++|||++++|+++
T Consensus      1314 iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~IL 1393 (1495)
T PLN03232       1314 IIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKIL 1393 (1495)
T ss_pred             EECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence            55554       22222100     1111112211           2221    245699999999 7999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                        +||||||+||....+.+.+.+++. .++.|
T Consensus      1394 --ILDEATSaLD~~Te~~Iq~~L~~~-~~~~T 1422 (1495)
T PLN03232       1394 --VLDEATASVDVRTDSLIQRTIREE-FKSCT 1422 (1495)
T ss_pred             --EEECCcccCCHHHHHHHHHHHHHH-cCCCE
Confidence              999999999999999999888863 34444

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.92  E-value=1.1e-24  Score=191.52  Aligned_cols=148  Identities=17%  Similarity=0.156  Sum_probs=108.7

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc-ccccccccccCCCh-
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD-NLRHGLNKNLGFSA-   81 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~-~~~~~~~~~i~~~~-   81 (190)
                      ||.+++++++|+.+.+++++|+++.+|+.+||+|+||||||||+|+|+|.+ .+.+|.|..... .+.. +.+...... 
T Consensus         3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~-~~~~G~i~~~~~~~v~~-l~Q~~~~~~~   80 (530)
T COG0488           3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL-EPDSGEVTRPKGLRVGY-LSQEPPLDPE   80 (530)
T ss_pred             eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC-cCCCCeEeecCCceEEE-eCCCCCcCCC
Confidence            789999999999999999999999999999999999999999999999988 788898887653 1110 111100000 


Q ss_pred             -----------hhHHHHHHH---------------H----------------HHHHHHHHHcCcce---eecccCccHHH
Q 029613           82 -----------EDRTENIRR---------------V----------------GEVAKLFADAGLIC---IASLISPYRKD  116 (190)
Q Consensus        82 -----------~~~~~~~~~---------------~----------------~~~~~~~~~~~~~~---~~~~lS~g~kq  116 (190)
                                 ....+..+.               .                .++..++..++...   .+..||||+|.
T Consensus        81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~  160 (530)
T COG0488          81 KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRR  160 (530)
T ss_pred             ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHH
Confidence                       000000000               0                11222333333322   36779999999


Q ss_pred             H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      | .+|++|+.+|+++  +|||||++||......+-..+.+
T Consensus       161 Rv~LA~aL~~~pDlL--LLDEPTNHLD~~~i~WLe~~L~~  198 (530)
T COG0488         161 RVALARALLEEPDLL--LLDEPTNHLDLESIEWLEDYLKR  198 (530)
T ss_pred             HHHHHHHHhcCCCEE--EEcCCCcccCHHHHHHHHHHHHh
Confidence            9 5999999999999  99999999999999888877764

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.92  E-value=9.2e-25  Score=172.72  Aligned_cols=133  Identities=19%  Similarity=0.111  Sum_probs=94.3

Q ss_pred             ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEE-EcCcccccccccccCCChh-hHHHHHHHHH---
Q 029613           18 GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI-LDGDNLRHGLNKNLGFSAE-DRTENIRRVG---   92 (190)
Q Consensus        18 ~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~-~~g~~~~~~~~~~i~~~~~-~~~~~~~~~~---   92 (190)
                      .+++++||++++|++++|+||||||||||+++|+|++ ++.+|.|. +++..+......  .+.+. ...+++....   
T Consensus         1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~sG~i~~~~~~~~~~~~~~--~l~~~ltv~enl~~~~~~~   77 (213)
T PRK15177          1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD-APDEGDFIGLRGDALPLGANS--FILPGLTGEENARMMASLY   77 (213)
T ss_pred             CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCCCEEEecCceecccccc--ccCCcCcHHHHHHHHHHHc
Confidence            3689999999999999999999999999999999977 78899986 777654211100  01110 1122221110   


Q ss_pred             -----HHHH-HHHHcCc----ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613           93 -----EVAK-LFADAGL----ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus        93 -----~~~~-~~~~~~~----~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                           +... +....++    ...+..+|+||+|| .+||+++.+|+++  +||||++++|+..++.+.+.+.+
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~ll--llDEP~~~lD~~~~~~~~~~l~~  149 (213)
T PRK15177         78 GLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLY--IADGKLYTGDNATQLRMQAALAC  149 (213)
T ss_pred             CCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEE--EECCCCccCCHHHHHHHHHHHHH
Confidence                 0011 1111122    12367799999999 6999999999999  99999999999999888887643

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.92  E-value=9.5e-25  Score=167.80  Aligned_cols=121  Identities=20%  Similarity=0.176  Sum_probs=93.0

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHH
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVA   95 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   95 (190)
                      .+++++++||++++|++++|+||||||||||+++|.+     .+|.+.+++..... .+..+.|..+            .
T Consensus         7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~~-~~~~~~~~~q------------~   68 (176)
T cd03238           7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPKF-SRNKLIFIDQ------------L   68 (176)
T ss_pred             eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCccccc-ccccEEEEhH------------H
Confidence            4679999999999999999999999999999998843     36777777652111 1112334433            1


Q ss_pred             HHHHHcCc-----ceeecccCccHHHH-HHHHHhCCC--CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           96 KLFADAGL-----ICIASLISPYRKDR-DACRAMLPD--SNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        96 ~~~~~~~~-----~~~~~~lS~g~kqr-~iarall~~--~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +.+...++     ...+..+|+||+|| .+||+++.+  |+++  +|||||++||+..++.+.+.+++-
T Consensus        69 ~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~ll--LlDEPt~~LD~~~~~~l~~~l~~~  135 (176)
T cd03238          69 QFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLF--ILDEPSTGLHQQDINQLLEVIKGL  135 (176)
T ss_pred             HHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            12233333     23467899999999 699999999  9999  999999999999999999988764

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.91  E-value=1.1e-24  Score=173.34  Aligned_cols=129  Identities=17%  Similarity=0.209  Sum_probs=95.5

Q ss_pred             cccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh----------HHHHHH-----
Q 029613           25 LLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED----------RTENIR-----   89 (190)
Q Consensus        25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~----------~~~~~~-----   89 (190)
                      |++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.++.. ....++|.+++          ..+++.     
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~   78 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLI-PPAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG   78 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence            578999999999999999999999999977 7889999999976521 11112222211          111110     


Q ss_pred             -----------HHHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHH
Q 029613           90 -----------RVGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLA  153 (190)
Q Consensus        90 -----------~~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~  153 (190)
                                 ....+..++...++..    .+..+|+||+|| .+||+++.+|+++  +|||||++||...++.+++.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll--ilDEP~~~LD~~~~~~l~~~l  156 (223)
T TIGR03771        79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVL--LLDEPFTGLDMPTQELLTELF  156 (223)
T ss_pred             ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE--EEeCCcccCCHHHHHHHHHHH
Confidence                       0112333444455432    367799999999 6999999999999  999999999999999999999


Q ss_pred             HcCC
Q 029613          154 RAGK  157 (190)
Q Consensus       154 ~~~~  157 (190)
                      ++..
T Consensus       157 ~~~~  160 (223)
T TIGR03771       157 IELA  160 (223)
T ss_pred             HHHH
Confidence            8643

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.91  E-value=1.1e-24  Score=179.06  Aligned_cols=143  Identities=19%  Similarity=0.144  Sum_probs=99.9

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED   83 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~   83 (190)
                      .|+++|+++.  ...+++++||++++|++++|+|+||||||||+++|+|++ ++.+|.|.++|.--...  +...+....
T Consensus        39 ~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~-~p~~G~I~i~g~i~yv~--q~~~l~~~t  113 (282)
T cd03291          39 NLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL-EPSEGKIKHSGRISFSS--QFSWIMPGT  113 (282)
T ss_pred             eEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEEEEe--CcccccccC
Confidence            5789999885  467999999999999999999999999999999999977 78899998887311000  000000001


Q ss_pred             HHHHHH-----------H-HH--HHHHHHHHcCc------ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhh
Q 029613           84 RTENIR-----------R-VG--EVAKLFADAGL------ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCE  142 (190)
Q Consensus        84 ~~~~~~-----------~-~~--~~~~~~~~~~~------~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld  142 (190)
                      ..+++.           . +.  .+...+.....      ...+..+|+||+|| .+||+++.+|+++  +|||||++||
T Consensus       114 v~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iL--iLDEPt~gLD  191 (282)
T cd03291         114 IKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLY--LLDSPFGYLD  191 (282)
T ss_pred             HHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEE--EEECCCccCC
Confidence            111110           0 00  01111111110      01245799999999 6999999999999  9999999999


Q ss_pred             hcChHHHHHHH
Q 029613          143 ARDPKGLYKLA  153 (190)
Q Consensus       143 ~~~~~~~~~~~  153 (190)
                      +..++.+++.+
T Consensus       192 ~~~~~~l~~~l  202 (282)
T cd03291         192 VFTEKEIFESC  202 (282)
T ss_pred             HHHHHHHHHHH
Confidence            99988887644

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.91  E-value=2.3e-24  Score=180.37  Aligned_cols=151  Identities=18%  Similarity=0.226  Sum_probs=116.6

Q ss_pred             cccccCcceeccC----ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh----CCCcEEEEcCcccccc--
Q 029613            3 TVGNSTNIFWQES----PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS----RGKLSYILDGDNLRHG--   72 (190)
Q Consensus         3 ~~l~~~~l~~~~~----~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~----~~~g~i~~~g~~~~~~--   72 (190)
                      ++|.++|++.+|.    .+.+++++||++.+||.++|+|+||||||-.+..+.++|+.    ..+|.|.|+|+++...  
T Consensus         5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se   84 (534)
T COG4172           5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE   84 (534)
T ss_pred             cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence            4799999999985    57899999999999999999999999999999999999953    2467999999886321  


Q ss_pred             -----c-ccccCCChhh--------------HHHHHH---------HHHHHHHHHHHcCcc-------eeecccCccHHH
Q 029613           73 -----L-NKNLGFSAED--------------RTENIR---------RVGEVAKLFADAGLI-------CIASLISPYRKD  116 (190)
Q Consensus        73 -----~-~~~i~~~~~~--------------~~~~~~---------~~~~~~~~~~~~~~~-------~~~~~lS~g~kq  116 (190)
                           + -+.+++..++              ..|.++         .-.++.+++...++.       .++..|||||||
T Consensus        85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQ  164 (534)
T COG4172          85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQ  164 (534)
T ss_pred             HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhh
Confidence                 0 0012222221              111111         112344556666654       368999999999


Q ss_pred             H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      | .||.|++.+|+++  +.||||.+||...+.++.+.+++
T Consensus       165 RVMIAMALan~P~lL--IADEPTTALDVtvQaQIL~Ll~~  202 (534)
T COG4172         165 RVMIAMALANEPDLL--IADEPTTALDVTVQAQILDLLKE  202 (534)
T ss_pred             HHHHHHHHcCCCCeE--eecCCcchhhhhhHHHHHHHHHH
Confidence            9 5999999999999  99999999999999999988876

>PRK13409 putative ATPase RIL; Provisional

Probab=99.91  E-value=9.3e-25  Score=195.24  Aligned_cols=144  Identities=21%  Similarity=0.238  Sum_probs=108.6

Q ss_pred             cceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEE-----------EcCccccccc---
Q 029613            9 NIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI-----------LDGDNLRHGL---   73 (190)
Q Consensus         9 ~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~-----------~~g~~~~~~~---   73 (190)
                      +++++|+.. .+|++++ .+++|++++|+||||||||||+|+|+|++ +|+.|.|.           ++|.++....   
T Consensus        78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l-~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~  155 (590)
T PRK13409         78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGEL-IPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL  155 (590)
T ss_pred             CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence            488999874 6999999 89999999999999999999999999987 78899987           8887653210   


Q ss_pred             ---ccccCCChh-----------hHHHHHHH---HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEE
Q 029613           74 ---NKNLGFSAE-----------DRTENIRR---VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIE  131 (190)
Q Consensus        74 ---~~~i~~~~~-----------~~~~~~~~---~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~  131 (190)
                         ...+++.++           ...+++..   ...+..++...++..    .+..||+||+|| ++|++++.+|+++ 
T Consensus       156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ll-  234 (590)
T PRK13409        156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFY-  234 (590)
T ss_pred             hccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE-
Confidence               011111111           11122211   122344555555532    367899999999 6999999999999 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHcC
Q 029613          132 VFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                       +|||||++||...+..+.+.+++.
T Consensus       235 -lLDEPts~LD~~~~~~l~~~i~~l  258 (590)
T PRK13409        235 -FFDEPTSYLDIRQRLNVARLIREL  258 (590)
T ss_pred             -EEECCCCCCCHHHHHHHHHHHHHH
Confidence             999999999999999999988874

>PTZ00243 ABC transporter; Provisional

Probab=99.91  E-value=4.7e-25  Score=214.09  Aligned_cols=154  Identities=18%  Similarity=0.124  Sum_probs=118.5

Q ss_pred             cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      |+++|++++|.+  ..+|+|+||+|++||.++|+|++|||||||+++|.|++ ++.+|.|.+||.++..    .++..++
T Consensus      1309 I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~-~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243       1309 LVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV-EVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred             EEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEcccCCHHHHHhcce
Confidence            789999999964  35999999999999999999999999999999999977 7889999999988753    3455666


Q ss_pred             CChhh-------HHHHHHHH-----HHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCC-CCe
Q 029613           79 FSAED-------RTENIRRV-----GEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPD-SNF  129 (190)
Q Consensus        79 ~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~-~~i  129 (190)
                      +.+|+       .++|+.-.     .++...+...++.               .-...||+||||| .+|||++++ |++
T Consensus      1388 iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~I 1467 (1560)
T PTZ00243       1388 MIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGF 1467 (1560)
T ss_pred             EECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCE
Confidence            66665       23333211     1222222222221               1235699999999 799999996 899


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                      +  +||||||+||....+.+.+.+++. +++.|
T Consensus      1468 L--lLDEATSaLD~~te~~Iq~~L~~~-~~~~T 1497 (1560)
T PTZ00243       1468 I--LMDEATANIDPALDRQIQATVMSA-FSAYT 1497 (1560)
T ss_pred             E--EEeCCCccCCHHHHHHHHHHHHHH-CCCCE
Confidence            9  999999999999999999888763 34434

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.91  E-value=5.2e-25  Score=213.81  Aligned_cols=154  Identities=18%  Similarity=0.136  Sum_probs=117.7

Q ss_pred             cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      ++++|++++|.+  .++|+|+||++++||.++|+|++|||||||+++|.|++ ++.+|.|.+||.++..    .++..++
T Consensus      1285 I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~-~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957      1285 VEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN-ESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred             EEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-cCCCCeEEECCEEccccCHHHHHhcCe
Confidence            789999999964  46999999999999999999999999999999999977 7889999999988753    3445555


Q ss_pred             CChhh-------HHHHHHHH-----HHHHHHHHHc-----------Cccee----ecccCccHHHH-HHHHHhCCCCCeE
Q 029613           79 FSAED-------RTENIRRV-----GEVAKLFADA-----------GLICI----ASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        79 ~~~~~-------~~~~~~~~-----~~~~~~~~~~-----------~~~~~----~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      +.+|+       .++|+.-.     .++...+...           |+...    ...+|+||||| ++|||++++|+++
T Consensus      1364 iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1443 (1522)
T TIGR00957      1364 IIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKIL 1443 (1522)
T ss_pred             EECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence            55554       22332200     1111112211           22222    35699999999 7999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                        +|||||+++|....+.+.+.+++ ..++.|
T Consensus      1444 --iLDEaTSalD~~Te~~Iq~~l~~-~~~~~T 1472 (1522)
T TIGR00957      1444 --VLDEATAAVDLETDNLIQSTIRT-QFEDCT 1472 (1522)
T ss_pred             --EEECCcccCCHHHHHHHHHHHHH-HcCCCE
Confidence              99999999999999999988876 344544

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03073 ABC transporter F family; Provisional

Probab=99.91  E-value=2e-24  Score=196.51  Aligned_cols=149  Identities=11%  Similarity=0.079  Sum_probs=109.5

Q ss_pred             cccccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-ccccccccc--C
Q 029613            3 TVGNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-LRHGLNKNL--G   78 (190)
Q Consensus         3 ~~l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-~~~~~~~~i--~   78 (190)
                      ++++++|+++.|++ ..+++++||++.+|++++|+||||||||||+|+|+|++ +|.+|.|.+++.. +.. +.+..  .
T Consensus       507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll-~p~~G~I~~~~~~~igy-v~Q~~~~~  584 (718)
T PLN03073        507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL-QPSSGTVFRSAKVRMAV-FSQHHVDG  584 (718)
T ss_pred             ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCceEEECCceeEEE-Eecccccc
Confidence            37899999999964 56999999999999999999999999999999999987 7788998876532 100 00000  0


Q ss_pred             CChhh--HHHHHHH-----HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613           79 FSAED--RTENIRR-----VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARD  145 (190)
Q Consensus        79 ~~~~~--~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~  145 (190)
                      +....  .......     -..+..++..+++.     ..+..||+||+|| .+||+++.+|+++  +|||||++||...
T Consensus       585 l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lL--LLDEPT~~LD~~s  662 (718)
T PLN03073        585 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIL--LLDEPSNHLDLDA  662 (718)
T ss_pred             CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEE--EEcCCCCCCCHHH
Confidence            00000  0000000     01233345555553     2367899999999 6999999999999  9999999999999


Q ss_pred             hHHHHHHHHc
Q 029613          146 PKGLYKLARA  155 (190)
Q Consensus       146 ~~~~~~~~~~  155 (190)
                      .+.+.+.+.+
T Consensus       663 ~~~l~~~L~~  672 (718)
T PLN03073        663 VEALIQGLVL  672 (718)
T ss_pred             HHHHHHHHHH
Confidence            9999888875

>PLN03073 ABC transporter F family; Provisional

Probab=99.91  E-value=9.6e-25  Score=198.64  Aligned_cols=150  Identities=13%  Similarity=0.092  Sum_probs=106.7

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--hCCCcEEEEcCccc-----cc-----
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--SRGKLSYILDGDNL-----RH-----   71 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~~~~g~i~~~g~~~-----~~-----   71 (190)
                      +|+++|++++|++..+|+++||++.+|++++|+|+||||||||+|+|+|...  .+.+|.|.+.++.+     ..     
T Consensus       177 ~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~  256 (718)
T PLN03073        177 DIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVL  256 (718)
T ss_pred             eEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHH
Confidence            6899999999998889999999999999999999999999999999998531  34567775433221     00     


Q ss_pred             -c-------cccccCCChhh---------------------HHHHHHHHHH----------------HHHHHHHcCcc--
Q 029613           72 -G-------LNKNLGFSAED---------------------RTENIRRVGE----------------VAKLFADAGLI--  104 (190)
Q Consensus        72 -~-------~~~~i~~~~~~---------------------~~~~~~~~~~----------------~~~~~~~~~~~--  104 (190)
                       .       ....+++..+.                     ..+...++.+                +..++..+++.  
T Consensus       257 ~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~  336 (718)
T PLN03073        257 NTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPE  336 (718)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChH
Confidence             0       00001111100                     0000111111                22233334442  


Q ss_pred             ---eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          105 ---CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       105 ---~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                         ..+..||+|++|| .+|++++.+|+++  +|||||++||......+.+.+++
T Consensus       337 ~~~~~~~~LSgG~k~rv~LA~aL~~~p~lL--lLDEPt~~LD~~~~~~l~~~L~~  389 (718)
T PLN03073        337 MQVKATKTFSGGWRMRIALARALFIEPDLL--LLDEPTNHLDLHAVLWLETYLLK  389 (718)
T ss_pred             HHhCchhhCCHHHHHHHHHHHHHhcCCCEE--EEECCCCCCCHHHHHHHHHHHHH
Confidence               2367899999999 6999999999999  99999999999999999999986

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.91  E-value=1e-24  Score=210.05  Aligned_cols=157  Identities=15%  Similarity=0.211  Sum_probs=118.2

Q ss_pred             ccccCcceeccC----ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh--CCCcEEEEcCccccccccccc
Q 029613            4 VGNSTNIFWQES----PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS--RGKLSYILDGDNLRHGLNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~----~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~--~~~g~i~~~g~~~~~~~~~~i   77 (190)
                      +++++|++++|+    .+.+|+++|+++++|++++|+||||||||||+++|+|++..  +.+|.|.++|.++....+..+
T Consensus       759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i  838 (1394)
T TIGR00956       759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI  838 (1394)
T ss_pred             eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence            467899998884    45799999999999999999999999999999999997731  567999999987643334445


Q ss_pred             CCChhh--------HHHHHHH---------------HHHHHHHHHHcCccee----ec----ccCccHHHH-HHHHHhCC
Q 029613           78 GFSAED--------RTENIRR---------------VGEVAKLFADAGLICI----AS----LISPYRKDR-DACRAMLP  125 (190)
Q Consensus        78 ~~~~~~--------~~~~~~~---------------~~~~~~~~~~~~~~~~----~~----~lS~g~kqr-~iarall~  125 (190)
                      +|.+++        ..+++..               ...+.+++...++...    +.    .+|+||||| .||++++.
T Consensus       839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~  918 (1394)
T TIGR00956       839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA  918 (1394)
T ss_pred             eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc
Confidence            555543        1222221               1123344455555332    32    699999999 59999999


Q ss_pred             CCC-eEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          126 DSN-FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       126 ~~~-il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                      +|+ ++  +|||||++||......+.+.+++....|.+
T Consensus       919 ~P~~iL--lLDEPTsgLD~~~~~~i~~~L~~la~~g~t  954 (1394)
T TIGR00956       919 KPKLLL--FLDEPTSGLDSQTAWSICKLMRKLADHGQA  954 (1394)
T ss_pred             CCCeEE--EEcCCCCCCCHHHHHHHHHHHHHHHHcCCE
Confidence            997 89  999999999999999999988875444433

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.91  E-value=3.8e-24  Score=162.84  Aligned_cols=152  Identities=20%  Similarity=0.229  Sum_probs=112.9

Q ss_pred             CCcccccCcceeccCc---------cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613            1 MATVGNSTNIFWQESP---------IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH   71 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~---------~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~   71 (190)
                      |.++++++|++|+|..         ..+++.+||.+++|+.++|+|.||||||||+|+|+|++ +|++|.|.++|+.+..
T Consensus         1 ~~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi-~PTsG~il~n~~~L~~   79 (267)
T COG4167           1 IETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGEILINDHPLHF   79 (267)
T ss_pred             CcchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc-CCCCceEEECCccccc
Confidence            4468999999998732         45889999999999999999999999999999999988 8999999999987532


Q ss_pred             cc-------------ccccCCChhhHH--------------HHHHHHHHHHHHHHHcCcce-----eecccCccHHHH-H
Q 029613           72 GL-------------NKNLGFSAEDRT--------------ENIRRVGEVAKLFADAGLIC-----IASLISPYRKDR-D  118 (190)
Q Consensus        72 ~~-------------~~~i~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-----~~~~lS~g~kqr-~  118 (190)
                      .-             ..+-++.|.-..              ..-.+-.++.+-+...|+.+     ++..++.||||| +
T Consensus        80 ~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVa  159 (267)
T COG4167          80 GDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVA  159 (267)
T ss_pred             cchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHH
Confidence            10             000112221100              00011123334444555543     477899999999 6


Q ss_pred             HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          119 ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       119 iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +|||++.+|+++  +.||..++||-.-+.++....-+
T Consensus       160 LARALIL~P~iI--IaDeAl~~LD~smrsQl~NL~Le  194 (267)
T COG4167         160 LARALILRPKII--IADEALASLDMSMRSQLINLMLE  194 (267)
T ss_pred             HHHHHhcCCcEE--EehhhhhhccHHHHHHHHHHHHH
Confidence            999999999999  99999999999988887766544

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.91  E-value=1.1e-24  Score=160.08  Aligned_cols=117  Identities=30%  Similarity=0.406  Sum_probs=84.6

Q ss_pred             ccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCCChhh--------HHHH
Q 029613           20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGFSAED--------RTEN   87 (190)
Q Consensus        20 l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~~~~~--------~~~~   87 (190)
                      |+++||++.+|++++|+|+||||||||+++|+|.+ ++.+|.|.+++.++..    ..+..+++.+++        ..++
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~-~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~   79 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL-PPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN   79 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS-HESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence            68999999999999999999999999999999977 6789999999987754    122233333332        1111


Q ss_pred             --HHHHHHHHHHHHHcCc-cee----ecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613           88 --IRRVGEVAKLFADAGL-ICI----ASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE  139 (190)
Q Consensus        88 --~~~~~~~~~~~~~~~~-~~~----~~~lS~g~kqr-~iarall~~~~il~vllDEP~~  139 (190)
                        -..+.++...+..... ...    ...+|+||+|| .+|++++.+|+++  +|||||+
T Consensus        80 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~ll--llDEPt~  137 (137)
T PF00005_consen   80 ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLL--LLDEPTN  137 (137)
T ss_dssp             HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEE--EEESTTT
T ss_pred             cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEE--EEeCCCC
Confidence              1112222222222221 122    37899999999 6999999999999  9999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.90  E-value=8.6e-25  Score=167.58  Aligned_cols=150  Identities=17%  Similarity=0.207  Sum_probs=111.2

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC-cccccc-----cccc
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG-DNLRHG-----LNKN   76 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g-~~~~~~-----~~~~   76 (190)
                      +++.++|++.+|++..+++++||++.+||.-+|+|||||||||++-.|+|.. +|..|.++|+| .++...     ++..
T Consensus         4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt-rp~~G~v~f~g~~dl~~~~e~~IAr~G   82 (249)
T COG4674           4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT-RPQEGEVLFDGDTDLTKLPEHRIARAG   82 (249)
T ss_pred             ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC-CCCcceEEEcCchhhccCCHHHHHHhc
Confidence            4689999999999999999999999999999999999999999999999977 78889999999 454321     1112


Q ss_pred             cCCChhh--------HHHHHHH--------------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHh
Q 029613           77 LGFSAED--------RTENIRR--------------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAM  123 (190)
Q Consensus        77 i~~~~~~--------~~~~~~~--------------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iaral  123 (190)
                      ++...|.        ..+|+.-                    -.++..++...++..    ....||-||||+ +|..-+
T Consensus        83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll  162 (249)
T COG4674          83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLL  162 (249)
T ss_pred             cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheee
Confidence            2221111        1111110                    012334444444433    256799999999 799999


Q ss_pred             CCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          124 LPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       124 l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +++|.++  +||||.+++....+...-+.++.
T Consensus       163 ~Q~P~lL--LlDEPvAGMTd~Et~~taeLl~~  192 (249)
T COG4674         163 AQDPKLL--LLDEPVAGMTDAETEKTAELLKS  192 (249)
T ss_pred             ccCCcEE--EecCccCCCcHHHHHHHHHHHHH
Confidence            9999999  99999999987776665555543

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.90  E-value=3.5e-24  Score=207.63  Aligned_cols=153  Identities=18%  Similarity=0.180  Sum_probs=117.0

Q ss_pred             cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      |+++|++++|..  .++|+|+||++++|+.++|+|+||||||||+++|.|++ + .+|.|.+||.++..    .++..++
T Consensus      1218 I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~-~-~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271      1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL-S-TEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred             EEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc-C-CCcEEEECCEEcccCCHHHHHhceE
Confidence            788999999964  67999999999999999999999999999999999987 4 68999999988753    3445555


Q ss_pred             CChhh-------HHHHHHHH-----HHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCCCCeE
Q 029613           79 FSAED-------RTENIRRV-----GEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        79 ~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      +.+|+       .++|+.-.     .++...+...++.               +-...+|+||||| .+|||++++|+++
T Consensus      1296 ~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~IL 1375 (1490)
T TIGR01271      1296 VIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKIL 1375 (1490)
T ss_pred             EEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEE
Confidence            55554       23333211     1122222222221               1134699999999 7999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                        +|||||+++|....+.+.+.+++. .++.|
T Consensus      1376 --lLDEaTS~lD~~Te~~I~~~L~~~-~~~~T 1404 (1490)
T TIGR01271      1376 --LLDEPSAHLDPVTLQIIRKTLKQS-FSNCT 1404 (1490)
T ss_pred             --EEeCCcccCCHHHHHHHHHHHHHH-cCCCE
Confidence              999999999999999999998863 34444

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.89  E-value=5.1e-23  Score=159.93  Aligned_cols=148  Identities=19%  Similarity=0.162  Sum_probs=106.3

Q ss_pred             ccccCcceeccCc-----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccc---c
Q 029613            4 VGNSTNIFWQESP-----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLN---K   75 (190)
Q Consensus         4 ~l~~~~l~~~~~~-----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~---~   75 (190)
                      |+.+.|+.+.|..     +++++++|+++.+|+++.++|.||||||||+++|+|.+ .+++|.|+++|.++.....   .
T Consensus         1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l-~~t~G~I~Idg~dVtk~~~~~RA   79 (263)
T COG1101           1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL-KPTSGQILIDGVDVTKKSVAKRA   79 (263)
T ss_pred             CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcc-ccCCceEEECceecccCCHHHHh
Confidence            5678888887743     56899999999999999999999999999999999988 8899999999998754110   0


Q ss_pred             -ccCCChhh----------HHHHHH------------------HHHHHHHHHHHcCc--c----eeecccCccHHHH-HH
Q 029613           76 -NLGFSAED----------RTENIR------------------RVGEVAKLFADAGL--I----CIASLISPYRKDR-DA  119 (190)
Q Consensus        76 -~i~~~~~~----------~~~~~~------------------~~~~~~~~~~~~~~--~----~~~~~lS~g~kqr-~i  119 (190)
                       .++-+.|+          .+|++.                  +.......+...++  .    ..+..+||||||- .+
T Consensus        80 ~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL  159 (263)
T COG1101          80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL  159 (263)
T ss_pred             hHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence             00001111          122211                  00111112222222  1    2366799999999 59


Q ss_pred             HHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHH
Q 029613          120 CRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLAR  154 (190)
Q Consensus       120 arall~~~~il~vllDEP~~~ld~~~~~~~~~~~~  154 (190)
                      +.|.++.|+++  +|||.|++|||+..+-+.+.-.
T Consensus       160 ~MAtl~~pkiL--LLDEHTAALDPkta~~vm~lT~  192 (263)
T COG1101         160 LMATLHPPKIL--LLDEHTAALDPKTAEFVMELTA  192 (263)
T ss_pred             HHHhcCCCcEE--EecchhhcCCcchHHHHHHHHH
Confidence            99999999999  9999999999998776665544

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.89  E-value=2.6e-23  Score=187.23  Aligned_cols=145  Identities=18%  Similarity=0.218  Sum_probs=108.3

Q ss_pred             CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC---CcEEEEcCccccc-ccccccCCChhh-------
Q 029613           15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG---KLSYILDGDNLRH-GLNKNLGFSAED-------   83 (190)
Q Consensus        15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~---~g~i~~~g~~~~~-~~~~~i~~~~~~-------   83 (190)
                      +.+++|+|+|+++++||+++|+||||||||||+++|+|.. +++   +|+|.++|.++.. ..+..++|.+++       
T Consensus        36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~-~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l  114 (617)
T TIGR00955        36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS-PKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL  114 (617)
T ss_pred             CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-CCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence            3567999999999999999999999999999999999976 443   7899999987542 222334444443       


Q ss_pred             -HHHHHH---------------HHHHHHHHHHHcCcce----ee------cccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613           84 -RTENIR---------------RVGEVAKLFADAGLIC----IA------SLISPYRKDR-DACRAMLPDSNFIEVFMNM  136 (190)
Q Consensus        84 -~~~~~~---------------~~~~~~~~~~~~~~~~----~~------~~lS~g~kqr-~iarall~~~~il~vllDE  136 (190)
                       ..+++.               ....+..+++..++..    .+      ..+|+||||| .+|++++.+|+++  +|||
T Consensus       115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl--llDE  192 (617)
T TIGR00955       115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL--FCDE  192 (617)
T ss_pred             cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE--EeeC
Confidence             122221               1112344555555532    12      3599999999 6999999999999  9999


Q ss_pred             CchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          137 PLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       137 P~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                      ||++||......+.+.+++...+|.+
T Consensus       193 PtsgLD~~~~~~l~~~L~~l~~~g~t  218 (617)
T TIGR00955       193 PTSGLDSFMAYSVVQVLKGLAQKGKT  218 (617)
T ss_pred             CCcchhHHHHHHHHHHHHHHHhCCCE
Confidence            99999999999999999876544544

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=7.2e-23  Score=172.02  Aligned_cols=180  Identities=17%  Similarity=0.181  Sum_probs=130.7

Q ss_pred             cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      +.+.++++.|.. +++++++||.+.+|+.++++|++|+||||++|+|.+.+ +..+|.|.+||+++..    .++..+|.
T Consensus       263 v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy-D~~sG~I~id~qdir~vtq~slR~aIg~  341 (497)
T COG5265         263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY-DVNSGSITIDGQDIRDVTQQSLRRAIGI  341 (497)
T ss_pred             EEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh-CCcCceEEEcchhHHHhHHHHHHHHhCc
Confidence            456789999964 68999999999999999999999999999999999988 8899999999998764    45666777


Q ss_pred             ChhhH-------HHHHH------------H---HHHHHHHHHH------cCcceeecccCccHHHH-HHHHHhCCCCCeE
Q 029613           80 SAEDR-------TENIR------------R---VGEVAKLFAD------AGLICIASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        80 ~~~~~-------~~~~~------------~---~~~~~~~~~~------~~~~~~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      .|++-       ..+++            .   .+++...+..      .++.+....+|||+||| ++||+++++|+++
T Consensus       342 VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il  421 (497)
T COG5265         342 VPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPIL  421 (497)
T ss_pred             CcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEE
Confidence            77761       11111            1   1122222221      12223356799999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcCCCCCccccccc-ccCCCCCCceEEecCCccccc
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSF-CYYEKLIPRTCKKKISATTRN  188 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~p~~~~~~~~~~~~~  188 (190)
                        +|||.||+||.+..+.+.+.+++-. +|.|-+-+. -..+-.+.|.++=-+++.+++
T Consensus       422 --~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti~~adeiivl~~g~i~e  477 (497)
T COG5265         422 --ILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTIIDADEIIVLDNGRIVE  477 (497)
T ss_pred             --EEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhccCCceEEEeeCCEEEe
Confidence              9999999999999999998888633 444422221 033444555555555555554

>PLN03130 ABC transporter C family member; Provisional

Probab=99.88  E-value=9.1e-23  Score=198.68  Aligned_cols=156  Identities=21%  Similarity=0.229  Sum_probs=106.6

Q ss_pred             ccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCC-cEEEEcCccc---------c
Q 029613            4 VGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGK-LSYILDGDNL---------R   70 (190)
Q Consensus         4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~-g~i~~~g~~~---------~   70 (190)
                      .++++|++++|+.   .++|+|+||++++|+.++|+||+|||||||+++|.|.+ ++.+ |.|.+.+.--         .
T Consensus       614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~~~GG~I~l~~~Iayv~Q~p~Lfn  692 (1622)
T PLN03130        614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL-PPRSDASVVIRGTVAYVPQVSWIFN  692 (1622)
T ss_pred             ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh-ccCCCceEEEcCeEEEEcCccccCC
Confidence            3788999999964   56899999999999999999999999999999999988 6777 7887765311         0


Q ss_pred             cccccccCCChhhHHHHHHHHHHHH---HHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchh
Q 029613           71 HGLNKNLGFSAEDRTENIRRVGEVA---KLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLEL  140 (190)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~  140 (190)
                      ...+.++.+......+....+-+.+   ..+...  |..    +-...|||||||| ++|||++.+|+++  +||||||+
T Consensus       693 gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~Il--LLDEptSA  770 (1622)
T PLN03130        693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVY--IFDDPLSA  770 (1622)
T ss_pred             CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEE--EECCCccc
Confidence            1122232221110111122211111   112211  111    2255699999999 6999999999999  99999999


Q ss_pred             hhhcChHHHHHHHHcCCCCCcc
Q 029613          141 CEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       141 ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                      ||....+.+++.+-.+..++.+
T Consensus       771 LD~~~~~~I~~~~l~~~l~~kT  792 (1622)
T PLN03130        771 LDAHVGRQVFDKCIKDELRGKT  792 (1622)
T ss_pred             cCHHHHHHHHHHHhhHHhcCCE
Confidence            9999888776554333333433

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.88  E-value=8.9e-23  Score=163.95  Aligned_cols=142  Identities=19%  Similarity=0.226  Sum_probs=105.0

Q ss_pred             cceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--------cccccCCC
Q 029613            9 NIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--------LNKNLGFS   80 (190)
Q Consensus         9 ~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--------~~~~i~~~   80 (190)
                      |+.+++++..+  +++|..+..-+++|.|+||||||||+++|+|++ .|..|.|.++|+.+...        -+..+||.
T Consensus         5 ~~~~~lG~~~l--~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~-rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYV   81 (352)
T COG4148           5 NFRQRLGNFAL--DANFTLPARGITALFGPSGSGKTSLINMIAGLT-RPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYV   81 (352)
T ss_pred             ehhhhcCceEE--EEeccCCCCceEEEecCCCCChhhHHHHHhccC-CccccEEEECCEEeecccCCcccChhhheeeeE
Confidence            44445554433  678888888999999999999999999999988 88999999999876431        23346777


Q ss_pred             hhhHH--------HHHHH------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhh
Q 029613           81 AEDRT--------ENIRR------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELC  141 (190)
Q Consensus        81 ~~~~~--------~~~~~------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~l  141 (190)
                      .|+.+        .|+++      ..++..+...+|..    .++..||||+||| +|+|||+..|+++  +||||+++|
T Consensus        82 FQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LL--LmDEPLaSL  159 (352)
T COG4148          82 FQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELL--LMDEPLASL  159 (352)
T ss_pred             eeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCee--eecCchhhc
Confidence            77621        12111      12333444444443    4588999999999 6999999999999  999999999


Q ss_pred             hhcChHHHHHHHHc
Q 029613          142 EARDPKGLYKLARA  155 (190)
Q Consensus       142 d~~~~~~~~~~~~~  155 (190)
                      |..-+..+...+++
T Consensus       160 D~~RK~EilpylER  173 (352)
T COG4148         160 DLPRKREILPYLER  173 (352)
T ss_pred             ccchhhHHHHHHHH
Confidence            98877776655554

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.88  E-value=1.9e-22  Score=149.13  Aligned_cols=152  Identities=20%  Similarity=0.187  Sum_probs=111.3

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh--CCCcEEEEcCcccccc--cccccCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS--RGKLSYILDGDNLRHG--LNKNLGF   79 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~--~~~g~i~~~g~~~~~~--~~~~i~~   79 (190)
                      |+.++|++.+.++...+-++||+|.+|||+.|+||||||||||+.-+.|.+..  .-+|++++++..+..-  ....+|+
T Consensus         2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi   81 (213)
T COG4136           2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI   81 (213)
T ss_pred             ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee
Confidence            57789999999999999999999999999999999999999999999998842  2468899998876431  1112232


Q ss_pred             Chhh--------------------HHHHHHHHHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613           80 SAED--------------------RTENIRRVGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFM  134 (190)
Q Consensus        80 ~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vll  134 (190)
                      ..++                    ..-+. +-......+.+.++..    .+..+|||||-| ++.|+++.+|+++  +|
T Consensus        82 LFQD~lLFphlsVg~Nl~fAlp~~~KG~a-Rr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~l--LL  158 (213)
T COG4136          82 LFQDALLFPHLSVGQNLLFALPATLKGNA-RRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKAL--LL  158 (213)
T ss_pred             eecccccccccccccceEEecCcccccHH-HHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCccee--ee
Confidence            2222                    11111 1112223345555542    378899999999 6999999999999  99


Q ss_pred             eCCchhhhhcChH----HHHHHHHcCCC
Q 029613          135 NMPLELCEARDPK----GLYKLARAGKI  158 (190)
Q Consensus       135 DEP~~~ld~~~~~----~~~~~~~~~~~  158 (190)
                      |||||.||...+.    .++..+++..+
T Consensus       159 DEPFS~LD~ALR~qfR~wVFs~~r~agi  186 (213)
T COG4136         159 DEPFSRLDVALRDQFRQWVFSEVRAAGI  186 (213)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999877654    45555565433

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.88  E-value=1.1e-22  Score=197.80  Aligned_cols=148  Identities=18%  Similarity=0.170  Sum_probs=106.9

Q ss_pred             ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc---------cc
Q 029613            4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR---------HG   72 (190)
Q Consensus         4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~---------~~   72 (190)
                      .++++|++++|+.  .++++++||++++|++++|+||||||||||+++|+|.+ ++.+|.|.++|.--.         ..
T Consensus       636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~-~~~~G~i~~~g~i~yv~Q~~~l~~~T  714 (1522)
T TIGR00957       636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-DKVEGHVHMKGSVAYVPQQAWIQNDS  714 (1522)
T ss_pred             cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-ccCCcEEEECCEEEEEcCCccccCCc
Confidence            5788999999974  57999999999999999999999999999999999977 788999998873110         01


Q ss_pred             cccccCCChhhHHHHHHHHHHHH---HHHHHc--Cc----ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhh
Q 029613           73 LNKNLGFSAEDRTENIRRVGEVA---KLFADA--GL----ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCE  142 (190)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~--~~----~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld  142 (190)
                      .+.++.+...-..+....+.+.+   ..+...  +.    ...+..|||||||| ++|||++.+|+++  +|||||++||
T Consensus       715 i~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~il--lLDEp~saLD  792 (1522)
T TIGR00957       715 LRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY--LFDDPLSAVD  792 (1522)
T ss_pred             HHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEE--EEcCCccccC
Confidence            11222111000001111111111   112211  11    12356799999999 6999999999999  9999999999


Q ss_pred             hcChHHHHHHHH
Q 029613          143 ARDPKGLYKLAR  154 (190)
Q Consensus       143 ~~~~~~~~~~~~  154 (190)
                      +...+.+++.+.
T Consensus       793 ~~~~~~i~~~l~  804 (1522)
T TIGR00957       793 AHVGKHIFEHVI  804 (1522)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998886

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.87  E-value=7e-23  Score=197.58  Aligned_cols=154  Identities=16%  Similarity=0.173  Sum_probs=110.5

Q ss_pred             cccCcceecc-------------CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC--CCcEEEEcCccc
Q 029613            5 GNSTNIFWQE-------------SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR--GKLSYILDGDNL   69 (190)
Q Consensus         5 l~~~~l~~~~-------------~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~--~~g~i~~~g~~~   69 (190)
                      +.++|+++..             +.+.+|+++|+.+++|++++|+||||||||||+++|+|.. ++  .+|.|.++|.+.
T Consensus       868 ~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~-~~g~~~G~I~inG~~~  946 (1470)
T PLN03140        868 MSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYIEGDIRISGFPK  946 (1470)
T ss_pred             EEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCC-CCCcccceEEECCccC
Confidence            4567776654             2346999999999999999999999999999999999975 32  478999999765


Q ss_pred             cc-ccccccCCChhh--------HHHHHHH---------------HHHHHHHHHHcCccee---------ecccCccHHH
Q 029613           70 RH-GLNKNLGFSAED--------RTENIRR---------------VGEVAKLFADAGLICI---------ASLISPYRKD  116 (190)
Q Consensus        70 ~~-~~~~~i~~~~~~--------~~~~~~~---------------~~~~~~~~~~~~~~~~---------~~~lS~g~kq  116 (190)
                      .. ..+..++|..++        ..+++..               ...+.+++...++...         +..+|+||||
T Consensus       947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerk 1026 (1470)
T PLN03140        947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRK 1026 (1470)
T ss_pred             ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHH
Confidence            32 122223444332        1222211               0112334444454321         2579999999


Q ss_pred             H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCc
Q 029613          117 R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGL  161 (190)
Q Consensus       117 r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~  161 (190)
                      | .||++++.+|+++  +|||||++||......+.+.+++....|.
T Consensus      1027 RvsIa~aL~~~P~lL--~LDEPTsgLD~~~a~~v~~~L~~l~~~g~ 1070 (1470)
T PLN03140       1027 RLTIAVELVANPSII--FMDEPTSGLDARAAAIVMRTVRNTVDTGR 1070 (1470)
T ss_pred             HHHHHHHHhhCCCEE--EEeCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence            9 5999999999999  99999999999999999988877433343

>PLN03232 ABC transporter C family member; Provisional

Probab=99.87  E-value=1.8e-22  Score=196.03  Aligned_cols=155  Identities=21%  Similarity=0.219  Sum_probs=103.3

Q ss_pred             ccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcE-EEEcCcc-------c--c
Q 029613            4 VGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLS-YILDGDN-------L--R   70 (190)
Q Consensus         4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~-i~~~g~~-------~--~   70 (190)
                      .++++|++++|+.   .++|+|+||++++|+.++|+|++|||||||+++|.|.+ ++.+|. +.+.+.-       +  .
T Consensus       614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~~~G~i~~~~~~Iayv~Q~p~Lf~  692 (1495)
T PLN03232        614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL-SHAETSSVVIRGSVAYVPQVSWIFN  692 (1495)
T ss_pred             cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-cccCCCEEEecCcEEEEcCcccccc
Confidence            3678999999964   56899999999999999999999999999999999988 555543 3333211       0  0


Q ss_pred             cccccccCC----ChhhHHHHHHHHHHHHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613           71 HGLNKNLGF----SAEDRTENIRRVGEVAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE  139 (190)
Q Consensus        71 ~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~  139 (190)
                      ...+.++.+    ..+...+.++. ..+...+...  |..    +-...|||||||| ++|||++.+|+++  +||||||
T Consensus       693 gTIreNI~fg~~~~~e~~~~vl~~-~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~Il--LLDEptS  769 (1495)
T PLN03232        693 ATVRENILFGSDFESERYWRAIDV-TALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIY--IFDDPLS  769 (1495)
T ss_pred             ccHHHHhhcCCccCHHHHHHHHHH-hCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEE--EEcCCcc
Confidence            112222222    22211111111 1111112111  111    1245699999999 7999999999999  9999999


Q ss_pred             hhhhcChHHHHHHHHcCCCCCcc
Q 029613          140 LCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       140 ~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                      +||....+.+++.+-.+..++.+
T Consensus       770 aLD~~t~~~I~~~~l~~~l~~kT  792 (1495)
T PLN03232        770 ALDAHVAHQVFDSCMKDELKGKT  792 (1495)
T ss_pred             ccCHHHHHHHHHHHhhhhhcCCE
Confidence            99999888887664443334433

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.86  E-value=9.8e-22  Score=172.94  Aligned_cols=148  Identities=18%  Similarity=0.160  Sum_probs=106.8

Q ss_pred             ccccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-ccccc-CC-
Q 029613            4 VGNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-LNKNL-GF-   79 (190)
Q Consensus         4 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-~~~~i-~~-   79 (190)
                      +++++|++++|++ +.+++++||.+.+|+.++|+||||+|||||+|+|+|.+ .+.+|.|.+... +.-. +.+.. .+ 
T Consensus       321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~-~~~~G~v~~g~~-v~igyf~Q~~~~l~  398 (530)
T COG0488         321 VLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL-GPLSGTVKVGET-VKIGYFDQHRDELD  398 (530)
T ss_pred             eEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhc-ccCCceEEeCCc-eEEEEEEehhhhcC
Confidence            6889999999965 68999999999999999999999999999999999987 566887776533 2110 00000 00 


Q ss_pred             ChhhHHHHHHHH------HHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChH
Q 029613           80 SAEDRTENIRRV------GEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPK  147 (190)
Q Consensus        80 ~~~~~~~~~~~~------~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~  147 (190)
                      ......+++...      ..+...+..++..     ..+..||||||-| .+|+.++..|+++  +|||||+.||....+
T Consensus       399 ~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvL--iLDEPTNhLDi~s~~  476 (530)
T COG0488         399 PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLL--LLDEPTNHLDIESLE  476 (530)
T ss_pred             ccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEE--EEcCCCccCCHHHHH
Confidence            000111111111      1223333333332     3477899999999 5999999999999  999999999999988


Q ss_pred             HHHHHHHc
Q 029613          148 GLYKLARA  155 (190)
Q Consensus       148 ~~~~~~~~  155 (190)
                      .+-+.+.+
T Consensus       477 aLe~aL~~  484 (530)
T COG0488         477 ALEEALLD  484 (530)
T ss_pred             HHHHHHHh
Confidence            88877774

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.86  E-value=6e-22  Score=165.85  Aligned_cols=119  Identities=18%  Similarity=0.186  Sum_probs=87.5

Q ss_pred             EECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCChhh--------HHHHHHH------------HH
Q 029613           35 ITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSAED--------RTENIRR------------VG   92 (190)
Q Consensus        35 L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~~~--------~~~~~~~------------~~   92 (190)
                      |+||||||||||+|+|+|++ ++.+|+|.++|.++..  .....++|.+++        ..+++..            -.
T Consensus         1 l~G~nGsGKSTLl~~iaGl~-~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~   79 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFE-QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP   79 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence            58999999999999999977 7889999999977632  111223333322        2222221            01


Q ss_pred             HHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           93 EVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        93 ~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+..++...++..    .+..||+||+|| ++||+++.+|+++  +|||||++||...++.+++.+++-
T Consensus        80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~ll--lLDEP~s~LD~~~~~~l~~~l~~l  146 (325)
T TIGR01187        80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKIL--LLDEPLSALDKKLRDQMQLELKTI  146 (325)
T ss_pred             HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence            2334455555532    367899999999 6999999999999  999999999999999999888763

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.86  E-value=3.5e-20  Score=144.93  Aligned_cols=172  Identities=51%  Similarity=0.863  Sum_probs=141.5

Q ss_pred             ceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHH
Q 029613           10 IFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIR   89 (190)
Q Consensus        10 l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~   89 (190)
                      ..|.-+.++.-+.....-++|++++|+|+|||||||+++.|++.+...+.+.++++++++...+...++|.+++..+++.
T Consensus         4 ~~~~~~~v~~~~~~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~   83 (198)
T PRK03846          4 IVWHQHPVTKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIR   83 (198)
T ss_pred             cccccCCCCHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHH
Confidence            44555556666666666789999999999999999999999998866678899999998876554557888888888888


Q ss_pred             HHHHHHHHHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCccccccccc
Q 029613           90 RVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCY  169 (190)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
                      ++..++..+...|...+....+.....|+.++.++.+..++.|+||.|...+..|+.+.++...+.+++..+.....+ |
T Consensus        84 ~l~~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~l~~~r~~-Y  162 (198)
T PRK03846         84 RVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDPKGLYKKARAGEIRNFTGIDSV-Y  162 (198)
T ss_pred             HHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCchhHHHHhhcCCccCccccccc-C
Confidence            887777777777777777777778888999999998877766799999999999987777776667788888899999 9


Q ss_pred             CCCCCCceEEecC
Q 029613          170 YEKLIPRTCKKKI  182 (190)
Q Consensus       170 ~~p~~p~~~~~~~  182 (190)
                      ++|..+|+++|--
T Consensus       163 ~~p~~ad~~Idt~  175 (198)
T PRK03846        163 EAPESPEIHLDTG  175 (198)
T ss_pred             CCCCCCCEEEECC
Confidence            9999999999843

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.85  E-value=7.1e-20  Score=141.42  Aligned_cols=164  Identities=57%  Similarity=0.932  Sum_probs=139.4

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHH
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAK   96 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   96 (190)
                      ++..++.+...++|++++|+|++||||||+++.|.+.+...+.+.++++++++...+....+|..+++.++...+..++.
T Consensus         5 ~~~~~~~~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T TIGR00455         5 ITKDERQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAK   84 (184)
T ss_pred             CCHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHH
Confidence            44556667788999999999999999999999999988655656789999988766656667888888887877777777


Q ss_pred             HHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCc
Q 029613           97 LFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPR  176 (190)
Q Consensus        97 ~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~  176 (190)
                      .+...|...++...++...+|..++.++.+.++..+++|.|...+-.|+.+.+++..+.++++.+.+...+ |++|..|+
T Consensus        85 ~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~l~~~~~~-y~~p~~ad  163 (184)
T TIGR00455        85 LFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKGFTGIDSP-YEAPENPE  163 (184)
T ss_pred             HHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccCcccccCC-CCCCCCCc
Confidence            77778888888888888888999999988877866799999999998888888887778899999999999 99999999


Q ss_pred             eEEec
Q 029613          177 TCKKK  181 (190)
Q Consensus       177 ~~~~~  181 (190)
                      +++|-
T Consensus       164 l~Idt  168 (184)
T TIGR00455       164 VVLDT  168 (184)
T ss_pred             EEEEC
Confidence            99983

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.85  E-value=1.2e-21  Score=189.12  Aligned_cols=138  Identities=15%  Similarity=0.123  Sum_probs=103.3

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC---CcEEEEcCcccccc-cccccCCChhh--------
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG---KLSYILDGDNLRHG-LNKNLGFSAED--------   83 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~---~g~i~~~g~~~~~~-~~~~i~~~~~~--------   83 (190)
                      .+.+|+|+|+.+++|++++|+||||||||||+|+|+|.+ ++.   +|+|.++|.++... .+..++|..++        
T Consensus       177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l-~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT  255 (1470)
T PLN03140        177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL-DPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT  255 (1470)
T ss_pred             cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC-CCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence            467999999999999999999999999999999999987 555   89999999765321 12223333332        


Q ss_pred             HHHHHHHHH----------------------------------------------HHHHHHHHcCcce---------eec
Q 029613           84 RTENIRRVG----------------------------------------------EVAKLFADAGLIC---------IAS  108 (190)
Q Consensus        84 ~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~---------~~~  108 (190)
                      ..+++....                                              .+..++...++..         .+.
T Consensus       256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r  335 (1470)
T PLN03140        256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR  335 (1470)
T ss_pred             HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence            111111000                                              0122344455532         245


Q ss_pred             ccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          109 LISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       109 ~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+||||||| .+|++++.+|+++  +|||||++||......+.+.+++-
T Consensus       336 glSGGerkRVsia~aL~~~p~vl--llDEPTsGLDs~t~~~i~~~Lr~l  382 (1470)
T PLN03140        336 GISGGQKKRVTTGEMIVGPTKTL--FMDEISTGLDSSTTYQIVKCLQQI  382 (1470)
T ss_pred             CCCcccceeeeehhhhcCCCcEE--EEeCCCcCccHHHHHHHHHHHHHH
Confidence            799999999 5999999999999  999999999999999999988874

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.85  E-value=1.7e-21  Score=188.04  Aligned_cols=139  Identities=16%  Similarity=0.119  Sum_probs=103.8

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh---hCCCcEEEEcCccccc---ccccccCCChhh------
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY---SRGKLSYILDGDNLRH---GLNKNLGFSAED------   83 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~---~~~~g~i~~~g~~~~~---~~~~~i~~~~~~------   83 (190)
                      .+++|+|+|+.+++|++++|+||||||||||+|+|+|++.   .+.+|+|.++|.++..   ..+..++|..++      
T Consensus        73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~  152 (1394)
T TIGR00956        73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH  152 (1394)
T ss_pred             cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence            3569999999999999999999999999999999999762   3578999999976532   122224444432      


Q ss_pred             --HHHHHHH-------------------HHHH-HHHHHHcCccee---------ecccCccHHHH-HHHHHhCCCCCeEE
Q 029613           84 --RTENIRR-------------------VGEV-AKLFADAGLICI---------ASLISPYRKDR-DACRAMLPDSNFIE  131 (190)
Q Consensus        84 --~~~~~~~-------------------~~~~-~~~~~~~~~~~~---------~~~lS~g~kqr-~iarall~~~~il~  131 (190)
                        ..+++..                   .... ..++...++...         +..+||||||| .||++++.+|+++ 
T Consensus       153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl-  231 (1394)
T TIGR00956       153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ-  231 (1394)
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE-
Confidence              1122111                   0011 123444555432         35699999999 5999999999999 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHcC
Q 029613          132 VFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                       +|||||++||......+.+.+++.
T Consensus       232 -llDEPTsgLD~~~~~~i~~~L~~l  255 (1394)
T TIGR00956       232 -CWDNATRGLDSATALEFIRALKTS  255 (1394)
T ss_pred             -EEeCCCCCcCHHHHHHHHHHHHHH
Confidence             999999999999999999988874

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.85  E-value=2.3e-21  Score=173.99  Aligned_cols=147  Identities=21%  Similarity=0.255  Sum_probs=108.9

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh--CCCcEEEEcCccccc-ccccccCCChhh--------H
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS--RGKLSYILDGDNLRH-GLNKNLGFSAED--------R   84 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~--~~~g~i~~~g~~~~~-~~~~~i~~~~~~--------~   84 (190)
                      .+++|+++|..+++||+++|+||+|||||||+++|+|....  .-+|.|.+||+.... ..+...+|..|+        .
T Consensus        42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV  121 (613)
T KOG0061|consen   42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV  121 (613)
T ss_pred             cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence            36799999999999999999999999999999999998842  357999999954322 233334455544        1


Q ss_pred             HHHHH---------------HHHHHHHHHHHcCccee----e-----cccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613           85 TENIR---------------RVGEVAKLFADAGLICI----A-----SLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE  139 (190)
Q Consensus        85 ~~~~~---------------~~~~~~~~~~~~~~~~~----~-----~~lS~g~kqr-~iarall~~~~il~vllDEP~~  139 (190)
                      +|.+.               +...+..++...++...    +     ..+|||||+| .+|..++.+|.++  ++||||+
T Consensus       122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iL--flDEPTS  199 (613)
T KOG0061|consen  122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSIL--FLDEPTS  199 (613)
T ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEE--EecCCCC
Confidence            12111               11234445555555422    2     4599999999 5999999999999  9999999


Q ss_pred             hhhhcChHHHHHHHHcCCCCCcccc
Q 029613          140 LCEARDPKGLYKLARAGKIKGLLSI  164 (190)
Q Consensus       140 ~ld~~~~~~~~~~~~~~~~~~~~~~  164 (190)
                      +||......+.+.+++-..+|.+=+
T Consensus       200 GLDS~sA~~vv~~Lk~lA~~grtVi  224 (613)
T KOG0061|consen  200 GLDSFSALQVVQLLKRLARSGRTVI  224 (613)
T ss_pred             CcchhhHHHHHHHHHHHHhCCCEEE
Confidence            9999999888888887555565533

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.85  E-value=2e-21  Score=188.57  Aligned_cols=133  Identities=19%  Similarity=0.185  Sum_probs=93.3

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc---------cccccccCCChhhHHHH
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR---------HGLNKNLGFSAEDRTEN   87 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~---------~~~~~~i~~~~~~~~~~   87 (190)
                      .++++|+||++++|++++|+||||||||||+++|+|.+ ++.+|.|.++|.--.         .....++.+......+.
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~-~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~  517 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL-EPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYR  517 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHH
Confidence            45899999999999999999999999999999999987 788999999873110         01111111110000001


Q ss_pred             HHHHHH---HHHHHHHc--C----cceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHH
Q 029613           88 IRRVGE---VAKLFADA--G----LICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKL  152 (190)
Q Consensus        88 ~~~~~~---~~~~~~~~--~----~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~  152 (190)
                      ...+..   +...+...  +    +...+..|||||||| .+|||++.+|+++  +||||+++||....+.+++.
T Consensus       518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~il--lLDep~saLD~~~~~~i~~~  590 (1490)
T TIGR01271       518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLY--LLDSPFTHLDVVTEKEIFES  590 (1490)
T ss_pred             HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEE--EEeCCcccCCHHHHHHHHHH
Confidence            111111   11112111  1    112256799999999 6999999999999  99999999999999999875

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.85  E-value=8.3e-20  Score=136.84  Aligned_cols=148  Identities=60%  Similarity=1.011  Sum_probs=121.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceeecccC
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLIS  111 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS  111 (190)
                      +++|+|++||||||+++.|++.+...+...+.++++.+...+....++.++++.+..+.+...+..+...+...++....
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~   80 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFIS   80 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence            47899999999999999999988655656788898888765555556777766666666555666565667666666666


Q ss_pred             ccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEe
Q 029613          112 PYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKK  180 (190)
Q Consensus       112 ~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~  180 (190)
                      ....+|..++.++...++..+++|.|...|..|+.+++|...+.|++++++|++.. |++|.+||+++|
T Consensus        81 ~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  148 (149)
T cd02027          81 PYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPKGLYKKARAGEIKGFTGIDDP-YEAPENPDLVLD  148 (149)
T ss_pred             CCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCchhhHHHHhCCCCCCccccCCC-CCCCCCCeeEec
Confidence            77777877788887678877799999999999999999999999999999999999 999999999887

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.84  E-value=2.9e-21  Score=179.69  Aligned_cols=154  Identities=17%  Similarity=0.194  Sum_probs=123.5

Q ss_pred             ccccCcceeccCccc-cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccccc
Q 029613            4 VGNSTNIFWQESPIG-RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~-~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i   77 (190)
                      .+.++++++.|+... |++++|+.+++|||.|+.|+|||||||++++|.|.. ++++|++++.|.++...     ....+
T Consensus       564 ~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~-~~t~G~a~i~g~~i~~~~~~~~~~~~i  642 (885)
T KOG0059|consen  564 ALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET-KPTSGEALIKGHDITVSTDFQQVRKQL  642 (885)
T ss_pred             eEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc-cCCcceEEEecCccccccchhhhhhhc
Confidence            456889999998776 999999999999999999999999999999999976 88999999999887542     45668


Q ss_pred             CCChhhH--------HHHHHHHH------------HHHHHHHHcCccee----ecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613           78 GFSAEDR--------TENIRRVG------------EVAKLFADAGLICI----ASLISPYRKDR-DACRAMLPDSNFIEV  132 (190)
Q Consensus        78 ~~~~~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~lS~g~kqr-~iarall~~~~il~v  132 (190)
                      ||.||..        +|.+...+            .+...+...++...    +..+|+|+|+| ..|.|++.+|+++  
T Consensus       643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi--  720 (885)
T KOG0059|consen  643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVI--  720 (885)
T ss_pred             ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEE--
Confidence            9988862        12221111            12334444555433    67799999999 6999999999999  


Q ss_pred             EeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          133 FMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       133 llDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      +||||++++|+..++.+++.+.+-...|
T Consensus       721 ~LDEPstGmDP~arr~lW~ii~~~~k~g  748 (885)
T KOG0059|consen  721 LLDEPSTGLDPKARRHLWDIIARLRKNG  748 (885)
T ss_pred             EecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999887654333

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.84  E-value=5.5e-21  Score=152.42  Aligned_cols=143  Identities=19%  Similarity=0.143  Sum_probs=86.2

Q ss_pred             eccCccccccccccccCCccEEEEECCCCCcHHHHH-HHHHH--HHh-----hC----CCcEEE------EcCccccccc
Q 029613           12 WQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLA-FSVNK--ELY-----SR----GKLSYI------LDGDNLRHGL   73 (190)
Q Consensus        12 ~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLl-r~l~g--~l~-----~~----~~g~i~------~~g~~~~~~~   73 (190)
                      +......+++++||++++||+++|+|+||||||||+ ..+..  ...     .+    ..+.+.      +.+.......
T Consensus         3 ~~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (226)
T cd03270           3 VRGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI   82 (226)
T ss_pred             eccchhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence            344567899999999999999999999999999996 33321  000     00    000000      0111000000


Q ss_pred             ccc-cCCChh-------hHHHHHHH------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCC--CeEE
Q 029613           74 NKN-LGFSAE-------DRTENIRR------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDS--NFIE  131 (190)
Q Consensus        74 ~~~-i~~~~~-------~~~~~~~~------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~--~il~  131 (190)
                      ... ....+.       +..+.+..      .......+...++.     ..+..+|+||+|| .+||+++.+|  +++ 
T Consensus        83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~ll-  161 (226)
T cd03270          83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLY-  161 (226)
T ss_pred             cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEE-
Confidence            000 000110       00000000      01112334444443     2477899999999 6999999998  599 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHcC
Q 029613          132 VFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                       +|||||++||+..++.+++.+++.
T Consensus       162 -llDEPt~gLD~~~~~~l~~~l~~~  185 (226)
T cd03270         162 -VLDEPSIGLHPRDNDRLIETLKRL  185 (226)
T ss_pred             -EEeCCccCCCHHHHHHHHHHHHHH
Confidence             999999999999999999888764

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.84  E-value=8.1e-21  Score=150.22  Aligned_cols=133  Identities=19%  Similarity=0.110  Sum_probs=95.0

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChh--------------
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE--------------   82 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~--------------   82 (190)
                      ..+|+|+||++.+||.+||+|+||||||||+|+|+|.+ +|++|.+.++|+-... +....|+.++              
T Consensus        40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~-~Pt~G~v~v~G~v~~l-i~lg~Gf~pelTGreNi~l~~~~~  117 (249)
T COG1134          40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY-KPTSGKVKVTGKVAPL-IELGAGFDPELTGRENIYLRGLIL  117 (249)
T ss_pred             EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc-CCCCceEEEcceEehh-hhcccCCCcccchHHHHHHHHHHh
Confidence            56899999999999999999999999999999999988 8999999999874311 1112233332              


Q ss_pred             -----hHHHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613           83 -----DRTENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus        83 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                           +..+....+.+.+++=+  -....+..+|.||+-| +++-+...+|+++  ++||-+++-|+.-.++=.+.+.+
T Consensus       118 G~~~~ei~~~~~eIieFaELG~--fi~~PvktYSSGM~aRLaFsia~~~~pdIL--llDEvlavGD~~F~~K~~~rl~e  192 (249)
T COG1134         118 GLTRKEIDEKVDEIIEFAELGD--FIDQPVKTYSSGMYARLAFSVATHVEPDIL--LLDEVLAVGDAAFQEKCLERLNE  192 (249)
T ss_pred             CccHHHHHHHHHHHHHHHHHHH--HhhCchhhccHHHHHHHHHhhhhhcCCCEE--EEehhhhcCCHHHHHHHHHHHHH
Confidence                 22211111111111100  0112366799999999 7999999999999  99999999998866655555544

>PTZ00243 ABC transporter; Provisional

Probab=99.83  E-value=1e-20  Score=184.10  Aligned_cols=137  Identities=19%  Similarity=0.190  Sum_probs=93.3

Q ss_pred             cCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc---------cccccccCCChhhH
Q 029613           14 ESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR---------HGLNKNLGFSAEDR   84 (190)
Q Consensus        14 ~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~---------~~~~~~i~~~~~~~   84 (190)
                      +++.++++++||++++|++++|+||||||||||+++|+|.+ ++.+|.|.+++.--.         .....++.+.....
T Consensus       670 ~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~-~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~  748 (1560)
T PTZ00243        670 LEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF-EISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEED  748 (1560)
T ss_pred             cCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhh
Confidence            34567999999999999999999999999999999999987 778888877532100         01111111111000


Q ss_pred             HHHHHHH---HHHHHHHHHc--Cc----ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHH
Q 029613           85 TENIRRV---GEVAKLFADA--GL----ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLA  153 (190)
Q Consensus        85 ~~~~~~~---~~~~~~~~~~--~~----~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~  153 (190)
                      .+.....   ..+...+...  +.    ...+..|||||||| .+|||++.+|+++  +|||||++||+...+.+++.+
T Consensus       749 ~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~il--lLDEP~saLD~~~~~~i~~~~  825 (1560)
T PTZ00243        749 AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVY--LLDDPLSALDAHVGERVVEEC  825 (1560)
T ss_pred             HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEE--EEcCccccCCHHHHHHHHHHH
Confidence            0111111   1111122221  22    23367799999999 6999999999999  999999999998888777643

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.82  E-value=5.1e-20  Score=174.25  Aligned_cols=158  Identities=18%  Similarity=0.204  Sum_probs=120.1

Q ss_pred             cccCcceeccCcc--ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESPI--GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~~--~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      |+++|++.+|...  .+|+++||.|++||-+||+|+.|||||||+.+|-++. .+.+|.|.+||.++.+    .++..++
T Consensus      1139 I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~-e~~~G~I~IDgvdI~~igL~dLRsrls 1217 (1381)
T KOG0054|consen 1139 IEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV-EPAEGEILIDGVDISKIGLHDLRSRLS 1217 (1381)
T ss_pred             EEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc-CccCCeEEEcCeecccccHHHHHhcCe
Confidence            7899999999654  7999999999999999999999999999999999987 6789999999988643    2333333


Q ss_pred             CChhh----------------------HHHHHHHHHHHHHHHHH--cCcce----eecccCccHHHH-HHHHHhCCCCCe
Q 029613           79 FSAED----------------------RTENIRRVGEVAKLFAD--AGLIC----IASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        79 ~~~~~----------------------~~~~~~~~~~~~~~~~~--~~~~~----~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      .-||+                      ..+.+.+. ++......  .++..    -...+|-||||. .+|||++++.++
T Consensus      1218 IIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~-~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skI 1296 (1381)
T KOG0054|consen 1218 IIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERC-QLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKI 1296 (1381)
T ss_pred             eeCCCCceecCccccccCcccccCHHHHHHHHHHh-ChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCE
Confidence            33333                      33333221 11112211  12222    245699999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcCCCCCccccccc
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSF  167 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~  167 (190)
                      +  +|||+|++.|.+.-..+.+.+|+ ++++-|-+++.
T Consensus      1297 L--vLDEATAsVD~~TD~lIQ~tIR~-~F~dcTVltIA 1331 (1381)
T KOG0054|consen 1297 L--VLDEATASVDPETDALIQKTIRE-EFKDCTVLTIA 1331 (1381)
T ss_pred             E--EEecccccCChHHHHHHHHHHHH-HhcCCeEEEEe
Confidence            9  99999999999998888888886 66676655555

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.82  E-value=5.7e-20  Score=162.11  Aligned_cols=147  Identities=19%  Similarity=0.251  Sum_probs=109.1

Q ss_pred             ccccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-cc----------c
Q 029613            4 VGNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-LR----------H   71 (190)
Q Consensus         4 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-~~----------~   71 (190)
                      .+.++|++..-++ ...+++.+|++++|+-+.|.|+||||||||+|+|+|++ +-++|.|.+-.+. +-          .
T Consensus       392 ~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW-P~g~G~I~~P~~~~~lflpQ~PY~p~G  470 (604)
T COG4178         392 GITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW-PWGSGRISMPADSALLFLPQRPYLPQG  470 (604)
T ss_pred             eeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC-ccCCCceecCCCCceEEecCCCCCCCc
Confidence            5788899887754 67899999999999999999999999999999999998 7788887766332 10          0


Q ss_pred             ccccccCC-------ChhhHHHHHHHH--HHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhh
Q 029613           72 GLNKNLGF-------SAEDRTENIRRV--GEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELC  141 (190)
Q Consensus        72 ~~~~~i~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~l  141 (190)
                      .++..+.|       .+++..+.+..+  .+++..+++  ....-..||+||+|| ++||.++++|+++  +|||.|++|
T Consensus       471 tLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~--~~~W~~vLS~GEqQRlafARilL~kP~~v--~LDEATsAL  546 (604)
T COG4178         471 TLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE--EDRWDRVLSGGEQQRLAFARLLLHKPKWV--FLDEATSAL  546 (604)
T ss_pred             cHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc--cCcHhhhcChhHHHHHHHHHHHHcCCCEE--EEecchhcc
Confidence            12222222       223333322221  223332222  122345699999999 7999999999999  999999999


Q ss_pred             hhcChHHHHHHHHc
Q 029613          142 EARDPKGLYKLARA  155 (190)
Q Consensus       142 d~~~~~~~~~~~~~  155 (190)
                      |+.....+|+++++
T Consensus       547 De~~e~~l~q~l~~  560 (604)
T COG4178         547 DEETEDRLYQLLKE  560 (604)
T ss_pred             ChHHHHHHHHHHHh
Confidence            99999999999987

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.81  E-value=1e-20  Score=147.92  Aligned_cols=132  Identities=17%  Similarity=0.189  Sum_probs=88.4

Q ss_pred             cccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC---------CcEEEEcCccccc-ccccccCCChhhHHHHHH-
Q 029613           21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG---------KLSYILDGDNLRH-GLNKNLGFSAEDRTENIR-   89 (190)
Q Consensus        21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~---------~g~i~~~g~~~~~-~~~~~i~~~~~~~~~~~~-   89 (190)
                      +++++++.+| +++|+||||||||||+++|++++. +.         .+.+.+.+.+... .....+++..++...... 
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~   91 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG-EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSI   91 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc-cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeE
Confidence            6789999999 999999999999999999999873 22         1235555554321 111223343332111000 


Q ss_pred             -HHHHHHHHHHHcCc-ceeecccCccHHHH-HHHHHhC----CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           90 -RVGEVAKLFADAGL-ICIASLISPYRKDR-DACRAML----PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        90 -~~~~~~~~~~~~~~-~~~~~~lS~g~kqr-~iarall----~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                       ....+.++++..+. ...+..+|+||+|| .+|++++    .+|+++  +||||+++||+.....+.+.+++.
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~il--llDEP~~~LD~~~~~~l~~~l~~~  163 (197)
T cd03278          92 ISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFC--VLDEVDAALDDANVERFARLLKEF  163 (197)
T ss_pred             EehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEE--EEeCCcccCCHHHHHHHHHHHHHh
Confidence             00122222222222 23467899999999 6999985    566899  999999999999999999998874

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.81  E-value=4.9e-20  Score=147.95  Aligned_cols=138  Identities=14%  Similarity=0.104  Sum_probs=87.1

Q ss_pred             eccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH---------------hhCCCc--------EEEEcCcc
Q 029613           12 WQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL---------------YSRGKL--------SYILDGDN   68 (190)
Q Consensus        12 ~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l---------------~~~~~g--------~i~~~g~~   68 (190)
                      ++|++..++++++     |++++|+||||||||||+++|++.+               ..++++        .+.+++.+
T Consensus        10 ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~   84 (243)
T cd03272          10 KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSD   84 (243)
T ss_pred             cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCC
Confidence            4577777888877     7899999999999999999998543               123344        45555421


Q ss_pred             cc-------cccccccCCChhh---------HHHHHHHHHHH----------------HHHHHHcC-cceeecccCccHH
Q 029613           69 LR-------HGLNKNLGFSAED---------RTENIRRVGEV----------------AKLFADAG-LICIASLISPYRK  115 (190)
Q Consensus        69 ~~-------~~~~~~i~~~~~~---------~~~~~~~~~~~----------------~~~~~~~~-~~~~~~~lS~g~k  115 (190)
                      -.       ......+++.++.         ..+....+..+                ..++.... ....+..+|+||+
T Consensus        85 ~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~  164 (243)
T cd03272          85 NRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQK  164 (243)
T ss_pred             CccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHH
Confidence            10       0111122332221         11111111110                00111000 1123677999999


Q ss_pred             HH-HHHHHhC----CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          116 DR-DACRAML----PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       116 qr-~iarall----~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      || .+||+++    .+|+++  +|||||++||+...+.+++.+++.
T Consensus       165 ~r~~la~~l~~~~~~~~~il--llDEp~~~ld~~~~~~~~~~l~~~  208 (243)
T cd03272         165 SLVALALIFAIQKCDPAPFY--LFDEIDAALDAQYRTAVANMIKEL  208 (243)
T ss_pred             HHHHHHHHHHHhccCCCCEE--EEECCccCCCHHHHHHHHHHHHHH
Confidence            99 6999995    467999  999999999999999999988874

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.79  E-value=2.8e-19  Score=154.23  Aligned_cols=150  Identities=14%  Similarity=0.158  Sum_probs=100.9

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEcCcccccc----cccccC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILDGDNLRHG----LNKNLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~g~~~~~~----~~~~i~   78 (190)
                      -+.+.|++++|.++..++|.+|++.+|+-+||+|+|||||||++++|.|...+ |.+-.+++-.+++...    +...+.
T Consensus        75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~  154 (614)
T KOG0927|consen   75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVM  154 (614)
T ss_pred             cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhh
Confidence            47899999999999999999999999999999999999999999999998732 2222222222222110    000000


Q ss_pred             CChhhHHHH----------------------HHHH---------HHHHHHHHHcCcc-----eeecccCccHHHH-HHHH
Q 029613           79 FSAEDRTEN----------------------IRRV---------GEVAKLFADAGLI-----CIASLISPYRKDR-DACR  121 (190)
Q Consensus        79 ~~~~~~~~~----------------------~~~~---------~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iar  121 (190)
                      ....++.+.                      ..+.         .+.+.++...+..     ..+..+|+|.+.| ++||
T Consensus       155 ~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr  234 (614)
T KOG0927|consen  155 ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALAR  234 (614)
T ss_pred             hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHH
Confidence            011110000                      0000         1122222222221     1367799999999 5999


Q ss_pred             HhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          122 AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       122 all~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +|+.+|+++  +|||||++||......+-+.+.+
T Consensus       235 ~Lf~kP~LL--LLDEPtnhLDleA~~wLee~L~k  266 (614)
T KOG0927|consen  235 ALFQKPDLL--LLDEPTNHLDLEAIVWLEEYLAK  266 (614)
T ss_pred             HHhcCCCEE--EecCCccCCCHHHHHHHHHHHHh
Confidence            999999999  99999999999988887777765

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.78  E-value=4.7e-19  Score=152.81  Aligned_cols=150  Identities=16%  Similarity=0.120  Sum_probs=110.5

Q ss_pred             cccccCcceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            3 TVGNSTNIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      |++.++|++|.|.+. .++++++|.+..++-++++||||+|||||+|++.|.+ .|..|.+.-.......    ......
T Consensus       388 pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl-~p~~G~vs~~~H~~~~~y~Qh~~e~l  466 (614)
T KOG0927|consen  388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL-QPTIGMVSRHSHNKLPRYNQHLAEQL  466 (614)
T ss_pred             CeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc-ccccccccccccccchhhhhhhHhhc
Confidence            467899999999866 5889999999999999999999999999999999988 6777766543322111    000011


Q ss_pred             CCChhhHHHH------HHHHHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613           78 GFSAEDRTEN------IRRVGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARD  145 (190)
Q Consensus        78 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~  145 (190)
                      .+......-.      ..+...+..++...|+.     .....||.|+|.| .+|+.++..|.++  +|||||++||-..
T Consensus       467 dl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lL--lLDEPtnhLDi~t  544 (614)
T KOG0927|consen  467 DLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLL--LLDEPTNHLDIET  544 (614)
T ss_pred             CcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEE--EecCCCcCCCchh
Confidence            1111111000      11233455566666664     2367799999999 5999999999999  9999999999999


Q ss_pred             hHHHHHHHHc
Q 029613          146 PKGLYKLARA  155 (190)
Q Consensus       146 ~~~~~~~~~~  155 (190)
                      ...+.+.+.+
T Consensus       545 id~laeaiNe  554 (614)
T KOG0927|consen  545 IDALAEAINE  554 (614)
T ss_pred             HHHHHHHHhc
Confidence            9999988876

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.77  E-value=2.5e-18  Score=144.09  Aligned_cols=142  Identities=20%  Similarity=0.183  Sum_probs=104.5

Q ss_pred             cccCcceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccccc----c---
Q 029613            5 GNSTNIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNK----N---   76 (190)
Q Consensus         5 l~~~~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~----~---   76 (190)
                      ++++|+.+.|... .-+..||+++++||++.|+|.|||||||+++++.|+. .|.+|.|++||+++...-..    .   
T Consensus       323 lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~-~PqsG~I~ldg~pV~~e~ledYR~LfSa  401 (546)
T COG4615         323 LELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY-QPQSGEILLDGKPVSAEQLEDYRKLFSA  401 (546)
T ss_pred             eeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc-CCCCCceeECCccCCCCCHHHHHHHHHH
Confidence            7899999999766 5688999999999999999999999999999999966 89999999999887531100    0   


Q ss_pred             -----------cC----CChhhHHHHHHHHHHHHHHHHHcCc--ce-eecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613           77 -----------LG----FSAEDRTENIRRVGEVAKLFADAGL--IC-IASLISPYRKDR-DACRAMLPDSNFIEVFMNMP  137 (190)
Q Consensus        77 -----------i~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~lS~g~kqr-~iarall~~~~il~vllDEP  137 (190)
                                 .+    -.++....+++++    ++-....+  .. ....+|-|||+| ++.-|++.+.+++  ++||=
T Consensus       402 vFsDyhLF~~ll~~e~~as~q~i~~~LqrL----el~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Il--v~DEW  475 (546)
T COG4615         402 VFSDYHLFDQLLGPEGKASPQLIEKWLQRL----ELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDIL--VLDEW  475 (546)
T ss_pred             HhhhHhhhHhhhCCccCCChHHHHHHHHHH----HHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeE--Eeehh
Confidence                       00    0011111111111    01011111  11 255699999999 7999999999999  99999


Q ss_pred             chhhhhcChHHHHHHH
Q 029613          138 LELCEARDPKGLYKLA  153 (190)
Q Consensus       138 ~~~ld~~~~~~~~~~~  153 (190)
                      .+-.||.-++.+|+.+
T Consensus       476 AADQDPaFRR~FY~~l  491 (546)
T COG4615         476 AADQDPAFRREFYQVL  491 (546)
T ss_pred             hccCChHHHHHHHHHH
Confidence            9999999888888765

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.77  E-value=1.9e-18  Score=163.72  Aligned_cols=179  Identities=19%  Similarity=0.153  Sum_probs=126.0

Q ss_pred             ccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc---------c
Q 029613            4 VGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR---------H   71 (190)
Q Consensus         4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~---------~   71 (190)
                      .++++|.+++.++   .+.|+|+||++++|+.++|+|+-|||||+|+.+|.|.+ +.-+|.+.++|.--+         .
T Consensus       518 ~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm-~~~sG~v~v~gsiaYv~Q~pWI~ng  596 (1381)
T KOG0054|consen  518 AIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEM-PKLSGSVAVNGSVAYVPQQPWIQNG  596 (1381)
T ss_pred             eEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCc-ccccceEEEcCeEEEeccccHhhCC
Confidence            4677887777653   34899999999999999999999999999999999998 677899999886211         0


Q ss_pred             ccccccCCChhhHHHHHHHHHHHHHHHHHc------Ccce---eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhh
Q 029613           72 GLNKNLGFSAEDRTENIRRVGEVAKLFADA------GLIC---IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELC  141 (190)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~l  141 (190)
                      ..+.++-|..+-..+...++-+.+.+-.+.      ....   -...|||||||| .+|||+.++++++  +||.|+|++
T Consensus       597 TvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIY--LLDDplSAV  674 (1381)
T KOG0054|consen  597 TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIY--LLDDPLSAV  674 (1381)
T ss_pred             cHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEE--EEcCcchhh
Confidence            122333222111112222222222221121      1122   256799999999 6999999999999  999999999


Q ss_pred             hhcChHHHHHHHHcCCCCCcc--cccccccCCCCCCceEEecCCccc
Q 029613          142 EARDPKGLYKLARAGKIKGLL--SIFSFCYYEKLIPRTCKKKISATT  186 (190)
Q Consensus       142 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~p~~~~~~~~~~~  186 (190)
                      |...-+.+++..-.|.-.+.|  .++++ -+-..+.|.++==+++.+
T Consensus       675 Dahvg~~if~~ci~~~L~~KT~ILVTHq-l~~L~~ad~Iivl~~G~I  720 (1381)
T KOG0054|consen  675 DAHVGKHIFEECIRGLLRGKTVILVTHQ-LQFLPHADQIIVLKDGKI  720 (1381)
T ss_pred             hHhhhHHHHHHHHHhhhcCCEEEEEeCc-hhhhhhCCEEEEecCCeE
Confidence            999999988877766555434  67777 666677776665555544

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.75  E-value=1.3e-16  Score=122.21  Aligned_cols=153  Identities=48%  Similarity=0.765  Sum_probs=117.3

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceee
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIA  107 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (190)
                      ++|++++|+|++||||||+++.|++.+...+...++++++.+...+...+++..+++..+.+.+..++..+...+...+.
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~   81 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLV   81 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            68999999999999999999999998854444456789888766555556677777777777776666666566666556


Q ss_pred             cccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEecCC
Q 029613          108 SLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKIS  183 (190)
Q Consensus       108 ~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~  183 (190)
                      ...++....|..++.+..  .+..|++|.|...+..|..+.+++..+.+++..+.....+ |+.|..+|+.++--+
T Consensus        82 ~~~~~~~~~~~~l~~~~~--~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~~~~-~~~p~~ad~~i~~~~  154 (175)
T PRK00889         82 SAISPYRETREEVRANIG--NFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGIDDP-YEPPLNPEVECRTDL  154 (175)
T ss_pred             ecCCCCHHHHHHHHhhcC--CeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCcccCCC-CCCCCCCcEEEECCC
Confidence            666776666666666654  4556699999999988987888877777788888888888 888988998886543

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.74  E-value=1e-17  Score=145.65  Aligned_cols=150  Identities=18%  Similarity=0.195  Sum_probs=108.7

Q ss_pred             cccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc--C--cccc------
Q 029613            3 TVGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD--G--DNLR------   70 (190)
Q Consensus         3 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~--g--~~~~------   70 (190)
                      +++++++++..-++  ..+++++||++..|+-+.|+||||||||+|+|.+.|++ +..+|.+..-  +  .++-      
T Consensus       432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW-p~~~G~l~k~~~~~~~~lfflPQrP  510 (659)
T KOG0060|consen  432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW-PSTGGKLTKPTDGGPKDLFFLPQRP  510 (659)
T ss_pred             ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc-ccCCCeEEecccCCCCceEEecCCC
Confidence            36788888887643  45779999999999999999999999999999999998 6667766543  3  2110      


Q ss_pred             ----cccccccCCChhh--------HHHHHHH-H--HHHHHHHHHcCcc------eeecccCccHHHH-HHHHHhCCCCC
Q 029613           71 ----HGLNKNLGFSAED--------RTENIRR-V--GEVAKLFADAGLI------CIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        71 ----~~~~~~i~~~~~~--------~~~~~~~-~--~~~~~~~~~~~~~------~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                          ..++.++-|....        ..+.+.+ +  .++..+..+.+-.      ++...||+|++|| ++||-+.++|+
T Consensus       511 Ymt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk  590 (659)
T KOG0060|consen  511 YMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPK  590 (659)
T ss_pred             CccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCc
Confidence                0233333333111        0111111 1  2344455544433      2467799999999 79999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +.  +|||.||+++......+|++.++
T Consensus       591 ~A--iLDE~TSAv~~dvE~~~Yr~~r~  615 (659)
T KOG0060|consen  591 FA--ILDECTSAVTEDVEGALYRKCRE  615 (659)
T ss_pred             eE--EeechhhhccHHHHHHHHHHHHH
Confidence            99  99999999999988999999887

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=5.9e-18  Score=145.37  Aligned_cols=144  Identities=19%  Similarity=0.215  Sum_probs=98.3

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEE-----EcCcccccc---cccc
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI-----LDGDNLRHG---LNKN   76 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~-----~~g~~~~~~---~~~~   76 (190)
                      |.+++.+..||++.+|.+.++.+..|.-+||+|+||+|||||+|+|+.-     +.+++     +.|+++.+.   +..+
T Consensus        81 i~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~-----~v~~f~veqE~~g~~t~~~~~~l~~D  155 (582)
T KOG0062|consen   81 IHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANG-----QVSGFHVEQEVRGDDTEALQSVLESD  155 (582)
T ss_pred             eeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhc-----CcCccCchhheeccchHHHhhhhhcc
Confidence            5667888899999999999999999999999999999999999999871     11111     223332210   0000


Q ss_pred             ---cCCChhhHHHHHH-HHHHHHH-HHHHcCcce-----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613           77 ---LGFSAEDRTENIR-RVGEVAK-LFADAGLIC-----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARD  145 (190)
Q Consensus        77 ---i~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~-----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~  145 (190)
                         ..+..++..-..+ ...++.. ++..+|...     ....+|||=|.| ++|||+..+|+++  +|||||+.||...
T Consensus       156 ~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlL--LLDEPTNhLDv~a  233 (582)
T KOG0062|consen  156 TERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLL--LLDEPTNHLDVVA  233 (582)
T ss_pred             HHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEE--eecCCcccchhHH
Confidence               0011111000011 1223333 444444432     356799999999 7999999999999  9999999999999


Q ss_pred             hHHHHHHHHc
Q 029613          146 PKGLYKLARA  155 (190)
Q Consensus       146 ~~~~~~~~~~  155 (190)
                      ...+-..+..
T Consensus       234 v~WLe~yL~t  243 (582)
T KOG0062|consen  234 VAWLENYLQT  243 (582)
T ss_pred             HHHHHHHHhh
Confidence            8888777765

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.73  E-value=2e-17  Score=134.45  Aligned_cols=140  Identities=19%  Similarity=0.231  Sum_probs=91.8

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHH-----HHHhh----CC-----------CcEEEEcCccccccccc
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVN-----KELYS----RG-----------KLSYILDGDNLRHGLNK   75 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~-----g~l~~----~~-----------~g~i~~~g~~~~~~~~~   75 (190)
                      ....|+++++.++.|.+++|+|.||||||||++.+.     ..+..    ++           ...+.++..++....+.
T Consensus         7 ~~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs   86 (261)
T cd03271           7 RENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRS   86 (261)
T ss_pred             chhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCC
Confidence            345789999999999999999999999999999662     11110    11           11355665444321111


Q ss_pred             c------------------------------cCCChhh--------HHHHHHH------HHHHHHHHHHcCcce-----e
Q 029613           76 N------------------------------LGFSAED--------RTENIRR------VGEVAKLFADAGLIC-----I  106 (190)
Q Consensus        76 ~------------------------------i~~~~~~--------~~~~~~~------~~~~~~~~~~~~~~~-----~  106 (190)
                      .                              +.|....        ..+.+..      +.+....+...++..     .
T Consensus        87 ~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~  166 (261)
T cd03271          87 NPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQP  166 (261)
T ss_pred             cHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCc
Confidence            0                              0111111        1111111      122334445555532     2


Q ss_pred             ecccCccHHHH-HHHHHhCCC---CCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          107 ASLISPYRKDR-DACRAMLPD---SNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       107 ~~~lS~g~kqr-~iarall~~---~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      +..+|+||+|| .+|++++.+   |+++  +|||||++||+.++..+.+.+++..
T Consensus       167 ~~~LSgGe~QRl~LAraL~~~~~~p~ll--lLDEPtsgLD~~~~~~l~~~L~~l~  219 (261)
T cd03271         167 ATTLSGGEAQRIKLAKELSKRSTGKTLY--ILDEPTTGLHFHDVKKLLEVLQRLV  219 (261)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCCCcEE--EEECCCCCCCHHHHHHHHHHHHHHH
Confidence            67799999999 699999996   6899  9999999999999999998887643

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.72  E-value=1.2e-18  Score=162.57  Aligned_cols=139  Identities=17%  Similarity=0.195  Sum_probs=103.1

Q ss_pred             CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC--CcEEEEcCcccc-cccccccCCChhh--------
Q 029613           15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG--KLSYILDGDNLR-HGLNKNLGFSAED--------   83 (190)
Q Consensus        15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~--~g~i~~~g~~~~-~~~~~~i~~~~~~--------   83 (190)
                      +.+++|+||+=-++||.+++|+|+||||||||++.|+|.. ..|  +|.|.++|.+.. .......||..|+        
T Consensus       802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~-t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T  880 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK-TGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT  880 (1391)
T ss_pred             cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCc-ccceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence            4467999999999999999999999999999999999976 333  578999998876 4455555666554        


Q ss_pred             H------------------HHHHHHHHHHHHHHHHcCcce-----eecccCccHHHH-HHHHHhCCCC-CeEEEEeeCCc
Q 029613           84 R------------------TENIRRVGEVAKLFADAGLIC-----IASLISPYRKDR-DACRAMLPDS-NFIEVFMNMPL  138 (190)
Q Consensus        84 ~------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~lS~g~kqr-~iarall~~~-~il~vllDEP~  138 (190)
                      .                  .+..+.+.++.++++.....+     ...-||..||+| .|+-.|+.+| .++  +|||||
T Consensus       881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il--FLDEPT  958 (1391)
T KOG0065|consen  881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL--FLDEPT  958 (1391)
T ss_pred             hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeE--EecCCC
Confidence            1                  122233344443332221111     134499999999 5999999999 667  999999


Q ss_pred             hhhhhcChHHHHHHHHcC
Q 029613          139 ELCEARDPKGLYKLARAG  156 (190)
Q Consensus       139 ~~ld~~~~~~~~~~~~~~  156 (190)
                      ||||.+....+.+.+++.
T Consensus       959 SGLDsqaA~~i~~~lrkl  976 (1391)
T KOG0065|consen  959 SGLDSQAAAIVMRFLRKL  976 (1391)
T ss_pred             CCccHHHHHHHHHHHHHH
Confidence            999999988888777763

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.72  E-value=4.3e-18  Score=137.64  Aligned_cols=49  Identities=2%  Similarity=-0.003  Sum_probs=43.7

Q ss_pred             eecccCccHHHH-HHHHHhC----CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          106 IASLISPYRKDR-DACRAML----PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       106 ~~~~lS~g~kqr-~iarall----~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+..+|+|++|| ++|++++    .+|+++  ++||||++||...++.+++.+++.
T Consensus       163 ~~~~lS~G~~qr~~la~al~~~~~~~~~il--llDEPt~~ld~~~~~~~~~~l~~~  216 (251)
T cd03273         163 SLTELSGGQRSLVALSLILALLLFKPAPMY--ILDEVDAALDLSHTQNIGRMIKTH  216 (251)
T ss_pred             cccccCHHHHHHHHHHHHHHHhhccCCCEE--EEeCCCcCCCHHHHHHHHHHHHHH
Confidence            367799999999 6999887    577999  999999999999999999999875

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.72  E-value=2.9e-18  Score=135.48  Aligned_cols=142  Identities=13%  Similarity=0.054  Sum_probs=85.1

Q ss_pred             cccCcceeccCccccccccccccC-CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc-Ccc-ccc----------
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQ-KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD-GDN-LRH----------   71 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~-~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~-g~~-~~~----------   71 (190)
                      |+++|.. +|.+.   ..++|... +|++++|+|+||||||||+++|++.+..+..+....+ ..+ +..          
T Consensus         6 i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~   81 (213)
T cd03279           6 LELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFT   81 (213)
T ss_pred             EEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEE
Confidence            5677776 55443   55667654 5999999999999999999999965532211111211 000 000          


Q ss_pred             --------ccccccCCChhhHHHHHHHH-HHHHHHHHHcCcceeecccCccHHHH-HHHHHhCC----------CCCeEE
Q 029613           72 --------GLNKNLGFSAEDRTENIRRV-GEVAKLFADAGLICIASLISPYRKDR-DACRAMLP----------DSNFIE  131 (190)
Q Consensus        72 --------~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~----------~~~il~  131 (190)
                              ......+...++.   .+.+ ..... +. .-+...+..+|+|++|| ++|++++.          +|+++ 
T Consensus        82 f~~~~~~~~~~r~~gl~~~~~---~~~~~l~~g~-l~-~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~l-  155 (213)
T cd03279          82 FQLGGKKYRVERSRGLDYDQF---TRIVLLPQGE-FD-RFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEAL-  155 (213)
T ss_pred             EEECCeEEEEEEecCCCHHHH---HHhhhhhhcc-hH-HHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEE-
Confidence                    0000111222111   1111 00000 00 01123366799999999 69999974          56889 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          132 VFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                       +|||||++||+...+.+.+.+++..
T Consensus       156 -llDEp~~~lD~~~~~~~~~~l~~~~  180 (213)
T cd03279         156 -FIDEGFGTLDPEALEAVATALELIR  180 (213)
T ss_pred             -EEeCCcccCCHHHHHHHHHHHHHHH
Confidence             9999999999999999988887643

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.71  E-value=2.6e-17  Score=142.79  Aligned_cols=141  Identities=20%  Similarity=0.310  Sum_probs=107.1

Q ss_pred             cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----ccccccCCChhhHH--------
Q 029613           19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----GLNKNLGFSAEDRT--------   85 (190)
Q Consensus        19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----~~~~~i~~~~~~~~--------   85 (190)
                      .++++||++++|||++|.|.-|||+|-++++|.| +.+..+|+|.++|+++..     .....++|.++++.        
T Consensus       274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG-~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~  352 (500)
T COG1129         274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFG-ARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM  352 (500)
T ss_pred             ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhC-CCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence            5789999999999999999999999999999999 446779999999987642     23345667766632        


Q ss_pred             ---HHH-----HHH-----------H-HHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613           86 ---ENI-----RRV-----------G-EVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE  139 (190)
Q Consensus        86 ---~~~-----~~~-----------~-~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~  139 (190)
                         +|+     .+.           . ........+...     ..+..||||.+|+ .+||.+..+|+++  +|||||-
T Consensus       353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vL--ilDEPTR  430 (500)
T COG1129         353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVL--ILDEPTR  430 (500)
T ss_pred             cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEE--EECCCCc
Confidence               111     110           0 111222222222     2367899999999 5999999999999  9999999


Q ss_pred             hhhhcChHHHHHHHHcCCCCCcc
Q 029613          140 LCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       140 ~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                      +.|.-.+..+|+.+++...+|..
T Consensus       431 GIDVGAK~eIy~li~~lA~~G~a  453 (500)
T COG1129         431 GIDVGAKAEIYRLIRELAAEGKA  453 (500)
T ss_pred             CcccchHHHHHHHHHHHHHCCCE
Confidence            99999999999999986656643

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.70  E-value=1.5e-17  Score=126.11  Aligned_cols=144  Identities=18%  Similarity=0.203  Sum_probs=94.7

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----cccccCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----LNKNLGF   79 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----~~~~i~~   79 (190)
                      |+++.|+...    +.+-.+|.++..||++-++||||||||||+-.++|+  .+++|+|.++|.++...    +...-.|
T Consensus         3 l~qln~v~~~----tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm--~~~sGsi~~~G~~l~~~~~~eLArhRAY   76 (248)
T COG4138           3 LMQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM--TSGSGSIQFAGQPLEAWSATELARHRAY   76 (248)
T ss_pred             eeeecccccc----ccccccccccccceEEEEECCCCccHHHHHHHHhCC--CCCCceEEECCcchhHHhHhHHHHHHHH
Confidence            4556666432    456678999999999999999999999999999996  47899999999987531    1110011


Q ss_pred             Chhh------------------HHHHHHHHHHHHHHHHHc-CcceeecccCccHHHHH-HHHHhCC-------CCCeEEE
Q 029613           80 SAED------------------RTENIRRVGEVAKLFADA-GLICIASLISPYRKDRD-ACRAMLP-------DSNFIEV  132 (190)
Q Consensus        80 ~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~lS~g~kqr~-iarall~-------~~~il~v  132 (190)
                      ..+.                  .......+.+++..+... .+-.....+|||++||. +|...++       ...++  
T Consensus        77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LL--  154 (248)
T COG4138          77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLL--  154 (248)
T ss_pred             HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeE--
Confidence            1111                  011112233333333211 11223678999999994 6655443       33577  


Q ss_pred             EeeCCchhhhhcChHHHHHHHHc
Q 029613          133 FMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       133 llDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      ++|||.++||......++..+.+
T Consensus       155 llDEP~~~LDvAQ~~aLdrll~~  177 (248)
T COG4138         155 LLDEPMNSLDVAQQSALDRLLSA  177 (248)
T ss_pred             EecCCCcchhHHHHHHHHHHHHH
Confidence            99999999998877777766655

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.69  E-value=1.4e-18  Score=137.41  Aligned_cols=144  Identities=14%  Similarity=-0.001  Sum_probs=84.5

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC-C--C-c--EEEEcCccccc-------
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR-G--K-L--SYILDGDNLRH-------   71 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~-~--~-g--~i~~~g~~~~~-------   71 (190)
                      |+++|.. +|++..+++++++     ++++|+|||||||||++++|.-.+-.. .  . .  .+.++......       
T Consensus         6 l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   79 (212)
T cd03274           6 LVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSV   79 (212)
T ss_pred             EEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHHHHhcCCCCCCCCceEEE
Confidence            4566665 7888999999988     899999999999999999998432100 0  0 0  00111110000       


Q ss_pred             --ccccc--------cCCChhhHHHHHHHHHHHHHHHHHcC-cceeecccCccHHHH-HHHHHhCC----CCCeEEEEee
Q 029613           72 --GLNKN--------LGFSAEDRTENIRRVGEVAKLFADAG-LICIASLISPYRKDR-DACRAMLP----DSNFIEVFMN  135 (190)
Q Consensus        72 --~~~~~--------i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lS~g~kqr-~iarall~----~~~il~vllD  135 (190)
                        .....        .++...... .+-...++...+.... ....+..+|+|++|| .+|++++.    +|+++  +||
T Consensus        80 ~~~~~~~~~~~~l~~~g~~~~~~~-~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~il--ilD  156 (212)
T cd03274          80 EVHFQEIIDKPLLKSKGIDLDHNR-FLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLY--VMD  156 (212)
T ss_pred             EEEEEeCCCHHHHHHCCcCCCCCc-eEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEE--EEc
Confidence              00000        000000000 0000001111111111 112256799999999 69999863    57999  999


Q ss_pred             CCchhhhhcChHHHHHHHHcCC
Q 029613          136 MPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       136 EP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      ||+++||+..++.+++.+++-.
T Consensus       157 EPt~gLD~~~~~~l~~~l~~~~  178 (212)
T cd03274         157 EIDAALDFRNVSIVANYIKERT  178 (212)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHc
Confidence            9999999999999999998743

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.69  E-value=5.1e-17  Score=126.56  Aligned_cols=150  Identities=15%  Similarity=0.154  Sum_probs=104.2

Q ss_pred             ccccCcceecc----CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC---CcEEEEcCccccc-----
Q 029613            4 VGNSTNIFWQE----SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG---KLSYILDGDNLRH-----   71 (190)
Q Consensus         4 ~l~~~~l~~~~----~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~---~g~i~~~g~~~~~-----   71 (190)
                      ++.++|++..+    |.+++++++|+++.+||+-+|+|+||||||-++|+|+|.....-   .....|++.++..     
T Consensus         3 LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~   82 (330)
T COG4170           3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE   82 (330)
T ss_pred             cccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence            78899998876    45789999999999999999999999999999999999763211   1123444433211     


Q ss_pred             ---ccccccCCChhh---------H-----H----------HHHHHH----HHHHHHHHHcCcc-------eeecccCcc
Q 029613           72 ---GLNKNLGFSAED---------R-----T----------ENIRRV----GEVAKLFADAGLI-------CIASLISPY  113 (190)
Q Consensus        72 ---~~~~~i~~~~~~---------~-----~----------~~~~~~----~~~~~~~~~~~~~-------~~~~~lS~g  113 (190)
                         ....++++..++         .     .          ++..++    .+..+++...|..       .++.++..|
T Consensus        83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeG  162 (330)
T COG4170          83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEG  162 (330)
T ss_pred             hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccC
Confidence               001111111111         0     0          011111    1233445555553       358889999


Q ss_pred             HHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          114 RKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       114 ~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +-|+ .||.|++.+|.++  +.||||+.+++-...+++.++.+
T Consensus       163 E~QKVMIA~A~AnqPrLL--IADEPTN~~e~~Tq~QifRLLs~  203 (330)
T COG4170         163 ECQKVMIAIALANQPRLL--IADEPTNSMEPTTQAQIFRLLSR  203 (330)
T ss_pred             cceeeeeehhhccCCceE--eccCCCcccCccHHHHHHHHHHH
Confidence            9999 5999999999999  99999999999999998877755

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.69  E-value=6.2e-16  Score=139.84  Aligned_cols=161  Identities=54%  Similarity=0.856  Sum_probs=137.0

Q ss_pred             ccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHH
Q 029613           20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFA   99 (190)
Q Consensus        20 l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   99 (190)
                      ....+..-.++.++++.|.+||||||+++.|...+...+.+.++++++.++..+....+|.++++.++++++..++..+.
T Consensus       450 ~~~~~~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~  529 (632)
T PRK05506        450 EARAARKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMA  529 (632)
T ss_pred             HHHHHHhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34444455578999999999999999999999988555667789999998776655667888888888888888888887


Q ss_pred             HcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEE
Q 029613          100 DAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCK  179 (190)
Q Consensus       100 ~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~  179 (190)
                      ..|...++..+++...+|..+|+++.+..+..++||.|...|..|+.+.++...+.++++.+.+...+ |++|..+++++
T Consensus       530 ~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~l~~~r~~-y~~P~~a~~~I  608 (632)
T PRK05506        530 DAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNFTGIDSP-YEAPENPELRL  608 (632)
T ss_pred             hCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcchhhhccccccccccccccC-CCCCCCCeEEE
Confidence            88888888888888889999999988767766799999999999999999977778899999999999 99999999999


Q ss_pred             ec
Q 029613          180 KK  181 (190)
Q Consensus       180 ~~  181 (190)
                      |-
T Consensus       609 d~  610 (632)
T PRK05506        609 DT  610 (632)
T ss_pred             eC
Confidence            85

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.67  E-value=1.4e-16  Score=135.50  Aligned_cols=123  Identities=16%  Similarity=0.168  Sum_probs=81.9

Q ss_pred             cccccccc-----CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh--------HHH
Q 029613           20 LERQKLLN-----QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED--------RTE   86 (190)
Q Consensus        20 l~~~sl~i-----~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~--------~~~   86 (190)
                      +.++.|++     ..||+++++||||-||||++++|+|.+ .|.+|.    ..++.-      +|.||-        ..+
T Consensus       352 ~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~i-kPdeg~----~~~~~v------SyKPQyI~~~~~gtV~~  420 (591)
T COG1245         352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVI-KPDEGS----EEDLKV------SYKPQYISPDYDGTVED  420 (591)
T ss_pred             cCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccc-cCCCCC----CccceE------eecceeecCCCCCcHHH
Confidence            34555655     567899999999999999999999988 677774    222211      122211        111


Q ss_pred             HHHHHHH--------HHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHH
Q 029613           87 NIRRVGE--------VAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLA  153 (190)
Q Consensus        87 ~~~~~~~--------~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~  153 (190)
                      .+.....        ..+++..+.+.    ..+..||||+.|| ++|.+|..+++++  +||||.+.||...+-..-..+
T Consensus       421 ~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlY--llDEPSA~LDvEqR~~vakvI  498 (591)
T COG1245         421 LLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLY--LLDEPSAYLDVEQRIIVAKVI  498 (591)
T ss_pred             HHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEE--EecCchhhccHHHHHHHHHHH
Confidence            1111100        11222222222    2377899999999 6999999999999  999999999988876666655


Q ss_pred             Hc
Q 029613          154 RA  155 (190)
Q Consensus       154 ~~  155 (190)
                      ++
T Consensus       499 RR  500 (591)
T COG1245         499 RR  500 (591)
T ss_pred             HH
Confidence            54

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.66  E-value=2.7e-16  Score=123.57  Aligned_cols=125  Identities=17%  Similarity=0.181  Sum_probs=75.8

Q ss_pred             ccccCCccEEEEECCCCCcHHHHHHHHH----HHHhhCCCcEEEEcCcccccc-cccccCCChh-------------hHH
Q 029613           24 KLLNQKGCVVWITGLSGSGKSTLAFSVN----KELYSRGKLSYILDGDNLRHG-LNKNLGFSAE-------------DRT   85 (190)
Q Consensus        24 sl~i~~Geii~L~G~nGsGKSTLlr~l~----g~l~~~~~g~i~~~g~~~~~~-~~~~i~~~~~-------------~~~   85 (190)
                      ++++.+| +++|+||||||||||+++|.    |.. .++.+.+..+.+.+... ....+++..+             ...
T Consensus        17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~-~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~   94 (204)
T cd03240          17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGEL-PPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL   94 (204)
T ss_pred             EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCC-CcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence            4556666 99999999999999999996    433 33333222111111100 0000000000             011


Q ss_pred             HHHHHH--HHHHHHHHHcCcceeecccCccHHHH-------HHHHHhCCCCCeEEEEeeCCchhhhhcChH-HHHHHHHc
Q 029613           86 ENIRRV--GEVAKLFADAGLICIASLISPYRKDR-------DACRAMLPDSNFIEVFMNMPLELCEARDPK-GLYKLARA  155 (190)
Q Consensus        86 ~~~~~~--~~~~~~~~~~~~~~~~~~lS~g~kqr-------~iarall~~~~il~vllDEP~~~ld~~~~~-~~~~~~~~  155 (190)
                      +++...  .++...+     ...+..+|+|++||       ++|++++.+|+++  +||||+++||+..++ .+.+.+++
T Consensus        95 ~~~~~~~~~~~~~~~-----~~~~~~LS~G~~~~~~la~rlala~al~~~p~il--llDEP~~~LD~~~~~~~l~~~l~~  167 (204)
T cd03240          95 ENVIFCHQGESNWPL-----LDMRGRCSGGEKVLASLIIRLALAETFGSNCGIL--ALDEPTTNLDEENIEESLAEIIEE  167 (204)
T ss_pred             hceeeechHHHHHHH-----hcCccccCccHHHHHHHHHHHHHHHHhccCCCEE--EEcCCccccCHHHHHHHHHHHHHH
Confidence            111000  0111111     23466899999995       5899999999999  999999999999999 99988876


Q ss_pred             CC
Q 029613          156 GK  157 (190)
Q Consensus       156 ~~  157 (190)
                      ..
T Consensus       168 ~~  169 (204)
T cd03240         168 RK  169 (204)
T ss_pred             HH
Confidence            43

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=2.7e-16  Score=133.60  Aligned_cols=143  Identities=17%  Similarity=0.159  Sum_probs=104.0

Q ss_pred             cccccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCCh
Q 029613            3 TVGNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSA   81 (190)
Q Consensus         3 ~~l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~   81 (190)
                      |++.+.+++|.| +.++.+..++|-|.--..++|+||||.|||||+++|.|.+ .|..|..+-+.+ +.      +|+-.
T Consensus       585 PvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl-~P~~GE~RKnhr-L~------iG~Fd  656 (807)
T KOG0066|consen  585 PVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKL-DPNDGELRKNHR-LR------IGWFD  656 (807)
T ss_pred             CeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCC-CCCcchhhccce-ee------eechh
Confidence            478899999999 5578899999999999999999999999999999999998 677775432211 10      11111


Q ss_pred             hh----------HHHHHHHHH-----HHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchh
Q 029613           82 ED----------RTENIRRVG-----EVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLEL  140 (190)
Q Consensus        82 ~~----------~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~  140 (190)
                      +.          ..+++.+..     .....+..+|+.     .-...||||++-| ++|--.+..|+++  ||||||++
T Consensus       657 Qh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvl--ILDEPTNN  734 (807)
T KOG0066|consen  657 QHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVL--ILDEPTNN  734 (807)
T ss_pred             hhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEE--EecCCCCC
Confidence            11          112222211     111222233332     1256799999999 5999999999999  99999999


Q ss_pred             hhhcChHHHHHHHHc
Q 029613          141 CEARDPKGLYKLARA  155 (190)
Q Consensus       141 ld~~~~~~~~~~~~~  155 (190)
                      ||......+-+.+.+
T Consensus       735 LDIESIDALaEAIne  749 (807)
T KOG0066|consen  735 LDIESIDALAEAINE  749 (807)
T ss_pred             cchhhHHHHHHHHHh
Confidence            999999888888886

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.63  E-value=1.2e-15  Score=131.74  Aligned_cols=148  Identities=14%  Similarity=0.092  Sum_probs=99.2

Q ss_pred             cccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC---------ccccc--c
Q 029613            5 GNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG---------DNLRH--G   72 (190)
Q Consensus         5 l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g---------~~~~~--~   72 (190)
                      |.++|+-.-- .+..++..++|.+++|-.+.|+||||||||+|.|+|.|++ +...|...+-.         ++...  .
T Consensus       482 I~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW-Pvy~g~L~~P~~~~mFYIPQRPYms~gt  560 (728)
T KOG0064|consen  482 IILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW-PVYNGLLSIPRPNNIFYIPQRPYMSGGT  560 (728)
T ss_pred             eEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccC-cccCCeeecCCCcceEeccCCCccCcCc
Confidence            3445554433 3344679999999999999999999999999999999988 44444332211         11110  1


Q ss_pred             cccc------------cCCChhhHHHHHHHHHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613           73 LNKN------------LGFSAEDRTENIRRVGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMN  135 (190)
Q Consensus        73 ~~~~------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllD  135 (190)
                      ++.+            -+|..++....+.. -.+..++++-+-.+    +-..||||+||| .+||.+.++|.+.  +||
T Consensus       561 lRDQIIYPdS~e~~~~kg~~d~dL~~iL~~-v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkya--lLD  637 (728)
T KOG0064|consen  561 LRDQIIYPDSSEQMKRKGYTDQDLEAILDI-VHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYA--LLD  637 (728)
T ss_pred             ccceeecCCcHHHHHhcCCCHHHHHHHHHH-hhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchh--hhh
Confidence            1111            23444444332222 22233444433222    345699999999 6999999999999  999


Q ss_pred             CCchhhhhcChHHHHHHHHcC
Q 029613          136 MPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       136 EP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |.|++........+|+.++.-
T Consensus       638 EcTsAvsidvE~~i~~~ak~~  658 (728)
T KOG0064|consen  638 ECTSAVSIDVEGKIFQAAKDA  658 (728)
T ss_pred             hhhcccccchHHHHHHHHHhc
Confidence            999999888888899998873

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.63  E-value=2.2e-15  Score=117.96  Aligned_cols=131  Identities=18%  Similarity=0.163  Sum_probs=78.4

Q ss_pred             ccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC----CcE----EEEcCccc---ccccccccCCChhhHHHHH
Q 029613           20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG----KLS----YILDGDNL---RHGLNKNLGFSAEDRTENI   88 (190)
Q Consensus        20 l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~----~g~----i~~~g~~~---~~~~~~~i~~~~~~~~~~~   88 (190)
                      ++++++++.+| +.+|+||||||||||+.+|.-.+....    .|.    +.-.|.+-   ..... .-+........ .
T Consensus        12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~-~~~~~~~~~~~-~   88 (198)
T cd03276          12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLK-NQGLDANPLCV-L   88 (198)
T ss_pred             eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEE-cCCccCCcCCH-H
Confidence            45667777776 778999999999999999975442110    010    00011110   00000 00000000000 0


Q ss_pred             HHHHHHHHHHHHcC-cceeecccCccHHHH-HHHHHh----CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           89 RRVGEVAKLFADAG-LICIASLISPYRKDR-DACRAM----LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        89 ~~~~~~~~~~~~~~-~~~~~~~lS~g~kqr-~iaral----l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      . ..++..++.... ....+..+|+||+|| ++|+++    +.+|+++  +||||+++||...+..+.+.+++.
T Consensus        89 ~-~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~il--llDEP~~glD~~~~~~~~~~l~~~  159 (198)
T cd03276          89 S-QDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFR--CLDEFDVFMDMVNRKISTDLLVKE  159 (198)
T ss_pred             H-HHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEE--EecCcccccCHHHHHHHHHHHHHH
Confidence            0 012222222211 233477899999999 599998    6899999  999999999999999999888763

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.63  E-value=6.5e-15  Score=131.32  Aligned_cols=158  Identities=44%  Similarity=0.653  Sum_probs=127.7

Q ss_pred             ccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcC
Q 029613           24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAG  102 (190)
Q Consensus        24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  102 (190)
                      --..++|++++|+|++||||||+++.|+..+.. .+...++++++.+...+....+|...++..+..++...+..+...|
T Consensus       386 ~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~G  465 (568)
T PRK05537        386 PPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNG  465 (568)
T ss_pred             ccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            445578999999999999999999999998843 4444688899888766666678888888877777776666565677


Q ss_pred             cceeecccCccHHHHHHHHHhCCCC-CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEec
Q 029613          103 LICIASLISPYRKDRDACRAMLPDS-NFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKK  181 (190)
Q Consensus       103 ~~~~~~~lS~g~kqr~iarall~~~-~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~  181 (190)
                      ...+....++....|.-.|.++.+. .+++|+||.|...|..|.++.+++..+.+.++.+.+...+ |+.|..+|+++|-
T Consensus       466 g~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l~~~R~~-yy~p~~Adl~IDt  544 (568)
T PRK05537        466 GIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGFTGISDP-YEPPANPELVIDT  544 (568)
T ss_pred             CEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhccccccccchhchhhcccccccc-ccCCCCCcEEEEC
Confidence            7777787889888887777777663 4666799999999999998888866666788899999999 9999999999994


Q ss_pred             C
Q 029613          182 I  182 (190)
Q Consensus       182 ~  182 (190)
                      -
T Consensus       545 ~  545 (568)
T PRK05537        545 T  545 (568)
T ss_pred             C
Confidence            3

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.59  E-value=7e-15  Score=136.98  Aligned_cols=59  Identities=17%  Similarity=0.164  Sum_probs=49.0

Q ss_pred             HHHHcCcce-----eecccCccHHHH-HHHHHhCCCC---CeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613           97 LFADAGLIC-----IASLISPYRKDR-DACRAMLPDS---NFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus        97 ~~~~~~~~~-----~~~~lS~g~kqr-~iarall~~~---~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      .+...++..     .+..||+||+|| .+|++++.+|   +++  +|||||++||..++..+.+.+++..
T Consensus       813 ~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~ll--ILDEPtsGLD~~~~~~L~~~L~~l~  880 (943)
T PRK00349        813 TLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLY--ILDEPTTGLHFEDIRKLLEVLHRLV  880 (943)
T ss_pred             HHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEE--EEECCCCCCCHHHHHHHHHHHHHHH
Confidence            444555532     367799999999 6999999999   899  9999999999999999998887643

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.57  E-value=8.1e-15  Score=113.84  Aligned_cols=148  Identities=15%  Similarity=0.152  Sum_probs=104.9

Q ss_pred             ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----------
Q 029613            4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----------   71 (190)
Q Consensus         4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----------   71 (190)
                      .+++.++.++|. ..+++-|+|++++.|.-..++|.||||||||+|+|+|.- -.+.|.|.+.|.+.-+           
T Consensus        13 aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKh-mv~~~~v~VlgrsaFhDt~l~~Sgdl~   91 (291)
T KOG2355|consen   13 AIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKH-MVGGGVVQVLGRSAFHDTSLESSGDLS   91 (291)
T ss_pred             eEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcc-cccCCeEEEcCcCccccccccccCcee
Confidence            478999999996 468999999999999999999999999999999999964 3455778887765321           


Q ss_pred             ----ccccccCCCh------hh-HHHHHHHH--------HHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEE
Q 029613           72 ----GLNKNLGFSA------ED-RTENIRRV--------GEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIE  131 (190)
Q Consensus        72 ----~~~~~i~~~~------~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~  131 (190)
                          +.....++..      +- ..+.+..+        ..+..++ +..+.--...+|.|||+| .|+..|++.-+++ 
T Consensus        92 YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iL-DIdl~WRmHkvSDGqrRRVQicMGLL~PfkVL-  169 (291)
T KOG2355|consen   92 YLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDIL-DIDLRWRMHKVSDGQRRRVQICMGLLKPFKVL-  169 (291)
T ss_pred             EecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhhe-eccceEEEeeccccchhhhHHHHhcccceeEE-
Confidence                0111111111      00 11111111        1111111 122233367799999999 5999999988888 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHc
Q 029613          132 VFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                       +|||-|--||.-.+..+++.+++
T Consensus       170 -LLDEVTVDLDVlARadLLeFlke  192 (291)
T KOG2355|consen  170 -LLDEVTVDLDVLARADLLEFLKE  192 (291)
T ss_pred             -EeeeeEeehHHHHHHHHHHHHHH
Confidence             99999999999999999988876

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.56  E-value=9.9e-15  Score=124.40  Aligned_cols=141  Identities=23%  Similarity=0.221  Sum_probs=86.6

Q ss_pred             cceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC-------------cccccc--
Q 029613            9 NIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG-------------DNLRHG--   72 (190)
Q Consensus         9 ~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g-------------~~~~~~--   72 (190)
                      ++..+|+.. ..|-++ ...++|.+++|+|+||-||||.+|+|+|.+ .|+-|  ..++             ..+..-  
T Consensus        79 e~vHRYg~NgFkL~~L-P~pr~G~V~GilG~NGiGKsTalkILaGel-~PNLG--~~~~pp~wdeVi~~FrGtELq~YF~  154 (591)
T COG1245          79 EVVHRYGVNGFKLYRL-PTPRPGKVVGILGPNGIGKSTALKILAGEL-KPNLG--RYEDPPSWDEVIKRFRGTELQNYFK  154 (591)
T ss_pred             cceeeccCCceEEecC-CCCCCCcEEEEEcCCCccHHHHHHHHhCcc-ccCCC--CCCCCCCHHHHHHHhhhhHHHHHHH
Confidence            355666532 122221 234789999999999999999999999998 55544  2222             111100  


Q ss_pred             -c-cccc--CCChh-------h----HHHHHHHH---HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCe
Q 029613           73 -L-NKNL--GFSAE-------D----RTENIRRV---GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        73 -~-~~~i--~~~~~-------~----~~~~~~~~---~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                       + ...+  ...+|       .    ..+.++..   +...+....+++..    -+..||||+-|| +||.++++++++
T Consensus       155 ~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADv  234 (591)
T COG1245         155 KLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADV  234 (591)
T ss_pred             HHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCE
Confidence             0 0000  00011       0    01111111   11222333344432    278899999999 799999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +  ++|||+|-||.+.+-..-..+++
T Consensus       235 Y--~FDEpsSyLDi~qRl~~ar~Ire  258 (591)
T COG1245         235 Y--FFDEPSSYLDIRQRLNAARVIRE  258 (591)
T ss_pred             E--EEcCCcccccHHHHHHHHHHHHH
Confidence            9  99999999999887776666666

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.55  E-value=3.7e-15  Score=120.30  Aligned_cols=51  Identities=8%  Similarity=-0.041  Sum_probs=43.9

Q ss_pred             cccCccHHHH-HHHHHhCCC----CCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          108 SLISPYRKDR-DACRAMLPD----SNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       108 ~~lS~g~kqr-~iarall~~----~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      ..+|+|++|| .+|++++.+    |+++  +||||+++||...+..+.+.+++....|
T Consensus       154 ~~LS~G~k~rl~la~al~~~~~~~p~~l--llDEPt~~LD~~~~~~l~~~i~~~~~~g  209 (247)
T cd03275         154 DNLSGGEKTMAALALLFAIHSYQPAPFF--VLDEVDAALDNTNVGKVASYIREQAGPN  209 (247)
T ss_pred             HHcCHHHHHHHHHHHHHHHhccCCCCEE--EEecccccCCHHHHHHHHHHHHHhccCC
Confidence            6799999999 699999864    8999  9999999999999999999888754333

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.55  E-value=1.6e-14  Score=134.40  Aligned_cols=48  Identities=15%  Similarity=0.144  Sum_probs=43.4

Q ss_pred             ecccCccHHHH-HHHHHhCC---CCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          107 ASLISPYRKDR-DACRAMLP---DSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       107 ~~~lS~g~kqr-~iarall~---~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +..||+||+|| .+|++++.   +|+++  +|||||++||+.+.+.+.+.+++.
T Consensus       826 ~~tLSgGe~QRl~LA~aL~~~~~~p~ll--ILDEPtsgLD~~~~~~L~~~L~~l  877 (924)
T TIGR00630       826 ATTLSGGEAQRIKLAKELSKRSTGRTLY--ILDEPTTGLHFDDIKKLLEVLQRL  877 (924)
T ss_pred             cccCCHHHHHHHHHHHHHhhcCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHH
Confidence            67799999999 59999997   48999  999999999999999999888764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.55  E-value=4.3e-13  Score=102.74  Aligned_cols=151  Identities=33%  Similarity=0.507  Sum_probs=106.3

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCccee
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICI  106 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (190)
                      .++|.+++++|++||||||+++.|+..+...+.+.++++++.+...+. ..++......+...+...+...+...+...+
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI   82 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILG-HYGYDKQSRIEMALKRAKLAKFLADQGMIVI   82 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            468999999999999999999999998866777888999887754322 1234443333333333444444444555455


Q ss_pred             ecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEecC
Q 029613          107 ASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKI  182 (190)
Q Consensus       107 ~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~  182 (190)
                      ....+....-+..++.++..  ++.++||.|...+-.|..+.++.....+.+..+.+...+ +++|. .|+++|-.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~--~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~-~~~~~-Ad~vI~~~  154 (176)
T PRK05541         83 VTTISMFDEIYAYNRKHLPN--YFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIP-FDEPK-ADLVIDNS  154 (176)
T ss_pred             EEeCCcHHHHHHHHHhhcCC--eEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCc-ccCCC-CCEEEeCC
Confidence            54444433344677777653  345699999999999998888877777888888889999 77776 48888854

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.51  E-value=6.9e-14  Score=110.65  Aligned_cols=133  Identities=14%  Similarity=0.145  Sum_probs=76.1

Q ss_pred             cccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC----C--------------cE--EEEcCcccccccccccCCC
Q 029613           21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG----K--------------LS--YILDGDNLRHGLNKNLGFS   80 (190)
Q Consensus        21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~----~--------------g~--i~~~g~~~~~~~~~~i~~~   80 (190)
                      +++.+++.+| +.+|+|+||||||||+.+|+-.+....    .              +.  +.+++.+..........+.
T Consensus        15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~~   93 (213)
T cd03277          15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQFL   93 (213)
T ss_pred             ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEEE
Confidence            4556666554 668999999999999999987662111    0              00  1111111000111111123


Q ss_pred             hhhHHHHHHHHHHHHHHHHHcC----c-ceeecccCccHHHHH-HH----HHhCCCCCeEEEEeeCCchhhhhcChHHHH
Q 029613           81 AEDRTENIRRVGEVAKLFADAG----L-ICIASLISPYRKDRD-AC----RAMLPDSNFIEVFMNMPLELCEARDPKGLY  150 (190)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~lS~g~kqr~-ia----rall~~~~il~vllDEP~~~ld~~~~~~~~  150 (190)
                      .++....+..+... +.+....    . ...+..+|+||+|+. ++    ++++.+|+++  ++|||+++||+..+..++
T Consensus        94 ~q~~~~~~~~~~~~-e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~ll--llDEP~~~LD~~~~~~i~  170 (213)
T cd03277          94 PQDRVGEFAKLSPI-ELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFR--VVDEINQGMDPTNERKVF  170 (213)
T ss_pred             chHHHHHHHhCChH-hHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEE--EEecccccCCHHHHHHHH
Confidence            33322222221111 1111111    1 123668999999984 33    4447899999  999999999999999999


Q ss_pred             HHHHcCC
Q 029613          151 KLARAGK  157 (190)
Q Consensus       151 ~~~~~~~  157 (190)
                      +.+.+-.
T Consensus       171 ~~l~~~~  177 (213)
T cd03277         171 DMLVETA  177 (213)
T ss_pred             HHHHHHh
Confidence            8887643

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.51  E-value=3.2e-14  Score=138.32  Aligned_cols=63  Identities=17%  Similarity=0.165  Sum_probs=50.3

Q ss_pred             HHHHHcCcce-----eecccCccHHHH-HHHHHhC---CCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613           96 KLFADAGLIC-----IASLISPYRKDR-DACRAML---PDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus        96 ~~~~~~~~~~-----~~~~lS~g~kqr-~iarall---~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      ..+...++..     .+..||+||+|| .+|++++   .+|+++  +|||||++||..+.+.+.+.+++....|
T Consensus       791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LL--ILDEPTsGLD~~~~~~Ll~lL~~L~~~G  862 (1809)
T PRK00635        791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLY--VLDEPTTGLHTHDIKALIYVLQSLTHQG  862 (1809)
T ss_pred             HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEE--EEeCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence            3445555532     356799999999 6999997   689999  9999999999999999998887643334

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.50  E-value=4.6e-14  Score=121.18  Aligned_cols=154  Identities=16%  Similarity=0.197  Sum_probs=118.7

Q ss_pred             ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc-cc-----ccccc
Q 029613            4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL-RH-----GLNKN   76 (190)
Q Consensus         4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~-~~-----~~~~~   76 (190)
                      ++++++++..-. +...++++||+++.|||++|.|-.|-|-+.|+.+|+|+. ++.+|.|.++|.++ ..     -....
T Consensus       257 vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr-~~~~G~I~l~G~~v~~~~~~~~~r~~G  335 (501)
T COG3845         257 VLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR-KPASGRILLNGKDVLGRLSPRERRRLG  335 (501)
T ss_pred             EEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCC-ccCCceEEECCEeccccCCHHHHHhcC
Confidence            688999988764 468999999999999999999999999999999999966 55669999999986 11     11234


Q ss_pred             cCCChhhHH-----------HHH------------------HHHH-HHHHHHHHcCcc-----eeecccCccHHHHH-HH
Q 029613           77 LGFSAEDRT-----------ENI------------------RRVG-EVAKLFADAGLI-----CIASLISPYRKDRD-AC  120 (190)
Q Consensus        77 i~~~~~~~~-----------~~~------------------~~~~-~~~~~~~~~~~~-----~~~~~lS~g~kqr~-ia  120 (190)
                      ++|.|+++.           +|+                  ..+. ....+...+.+.     ..+..||||..||. +|
T Consensus       336 ~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~Ila  415 (501)
T COG3845         336 LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILA  415 (501)
T ss_pred             CccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhh
Confidence            667777641           111                  0111 122334444443     23667999999995 99


Q ss_pred             HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      |.+..+|+++  ++..||.+||.-..+.+++.+.+.+-.|
T Consensus       416 REl~~~p~lL--I~~qPTrGLDvgA~~~I~~~l~e~r~~G  453 (501)
T COG3845         416 RELARRPDLL--IAAQPTRGLDVGAIEFIHERLLELRDAG  453 (501)
T ss_pred             hhhccCCCEE--EEcCCCccccHHHHHHHHHHHHHHHhcC
Confidence            9999999999  9999999999999999999998766666

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.49  E-value=1.5e-14  Score=113.27  Aligned_cols=117  Identities=12%  Similarity=0.054  Sum_probs=71.4

Q ss_pred             cccccccccCCcc-EEEEECCCCCcHHHHHHHHH-HHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHH
Q 029613           19 RLERQKLLNQKGC-VVWITGLSGSGKSTLAFSVN-KELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAK   96 (190)
Q Consensus        19 ~l~~~sl~i~~Ge-ii~L~G~nGsGKSTLlr~l~-g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   96 (190)
                      .+-++||++.+|+ +++|+||||||||||+|.|. ..+ ....|...-.....      .+++.++...    .+.    
T Consensus        16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~-~~~~G~~vp~~~~~------~~~~~~~~~~----~lg----   80 (200)
T cd03280          16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTL-MAQSGLPIPAAEGS------SLPVFENIFA----DIG----   80 (200)
T ss_pred             ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHH-HHHcCCCccccccc------cCcCccEEEE----ecC----
Confidence            4557899999995 89999999999999999998 322 12222100011111      0111111100    000    


Q ss_pred             HHHHcCcceeecccCccHHHHH-HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHH-HHHc
Q 029613           97 LFADAGLICIASLISPYRKDRD-ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYK-LARA  155 (190)
Q Consensus        97 ~~~~~~~~~~~~~lS~g~kqr~-iarall~~~~il~vllDEP~~~ld~~~~~~~~~-~~~~  155 (190)
                        ....+......+|.+++|+. ++++ +.+|+++  ++|||++++|+.....+.. .+++
T Consensus        81 --~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~ll--llDEp~~glD~~~~~~i~~~~l~~  136 (200)
T cd03280          81 --DEQSIEQSLSTFSSHMKNIARILQH-ADPDSLV--LLDELGSGTDPVEGAALAIAILEE  136 (200)
T ss_pred             --chhhhhcCcchHHHHHHHHHHHHHh-CCCCcEE--EEcCCCCCCCHHHHHHHHHHHHHH
Confidence              00011122346799999994 6666 5789999  9999999999998887753 3443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=1.9e-13  Score=117.85  Aligned_cols=143  Identities=15%  Similarity=0.146  Sum_probs=102.6

Q ss_pred             cccccCcceeccCcc--ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCC
Q 029613            3 TVGNSTNIFWQESPI--GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFS   80 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~--~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~   80 (190)
                      |.+++.++++.|...  +.+.++++.++.-.-++++|+||+||||+++++.+-+ .+.+|.+.+.++--       ++|.
T Consensus       361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l-~~~rgi~~~~~r~r-------i~~f  432 (582)
T KOG0062|consen  361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDL-TPTRGIVGRHPRLR-------IKYF  432 (582)
T ss_pred             CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccC-Ccccceeeecccce-------ecch
Confidence            467889999999754  4889999999999999999999999999999999987 66677665554311       0111


Q ss_pred             hhh----HHHHHHHH------------HHHHHHHHHcCcce-----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613           81 AED----RTENIRRV------------GEVAKLFADAGLIC-----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL  138 (190)
Q Consensus        81 ~~~----~~~~~~~~------------~~~~~~~~~~~~~~-----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~  138 (190)
                      .+-    ...+...+            .++..-+..+|+..     -...||||||-| ++|.....+|.++  +|||||
T Consensus       433 ~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlL--VLDEPT  510 (582)
T KOG0062|consen  433 AQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLL--VLDEPT  510 (582)
T ss_pred             hHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEE--EecCCC
Confidence            110    00000000            11222333444421     145699999999 6999999999999  999999


Q ss_pred             hhhhhcChHHHHHHHHc
Q 029613          139 ELCEARDPKGLYKLARA  155 (190)
Q Consensus       139 ~~ld~~~~~~~~~~~~~  155 (190)
                      +.||......+-..++.
T Consensus       511 NhLD~dsl~AL~~Al~~  527 (582)
T KOG0062|consen  511 NHLDRDSLGALAKALKN  527 (582)
T ss_pred             ccccHHHHHHHHHHHHh
Confidence            99998888888877764

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.46  E-value=3e-14  Score=111.64  Aligned_cols=111  Identities=12%  Similarity=0.041  Sum_probs=66.3

Q ss_pred             cccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcC
Q 029613           23 QKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAG  102 (190)
Q Consensus        23 ~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  102 (190)
                      .++++.+|++++|+|||||||||++++|++.......|.+.. ....      .+++..+.... +         -....
T Consensus        22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~~~~------~i~~~dqi~~~-~---------~~~d~   84 (202)
T cd03243          22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-AESA------SIPLVDRIFTR-I---------GAEDS   84 (202)
T ss_pred             eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-cccc------ccCCcCEEEEE-e---------cCccc
Confidence            355566889999999999999999999996542222332111 1110      11111110000 0         00001


Q ss_pred             cceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHH
Q 029613          103 LICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKL  152 (190)
Q Consensus       103 ~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~  152 (190)
                      .......++.+++|...+.+++.+|+++  ++|||++++|+.....+...
T Consensus        85 i~~~~s~~~~e~~~l~~i~~~~~~~~ll--llDEp~~gld~~~~~~l~~~  132 (202)
T cd03243          85 ISDGRSTFMAELLELKEILSLATPRSLV--LIDELGRGTSTAEGLAIAYA  132 (202)
T ss_pred             ccCCceeHHHHHHHHHHHHHhccCCeEE--EEecCCCCCCHHHHHHHHHH
Confidence            1111234566666666667778899999  99999999999887766543

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.46  E-value=1.8e-13  Score=115.80  Aligned_cols=137  Identities=19%  Similarity=0.173  Sum_probs=92.7

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-------hCCCcEEEEcCcccccccccc--cCCChhhHHHH
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-------SRGKLSYILDGDNLRHGLNKN--LGFSAEDRTEN   87 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-------~~~~g~i~~~g~~~~~~~~~~--i~~~~~~~~~~   87 (190)
                      ..+++|+||.+++|++++|+|+|||||||++++|.|...       .|++|.+.+--+.+.......  ..+......+.
T Consensus       396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tileh  475 (593)
T COG2401         396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEH  475 (593)
T ss_pred             eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHH
Confidence            357899999999999999999999999999999999753       244565554433322111100  01111112222


Q ss_pred             HHH----HHHHHHHHHHcCccee------ecccCccHHHHH-HHHHhCCCCCeEEEEeeCCchhhhhcChH----HHHHH
Q 029613           88 IRR----VGEVAKLFADAGLICI------ASLISPYRKDRD-ACRAMLPDSNFIEVFMNMPLELCEARDPK----GLYKL  152 (190)
Q Consensus        88 ~~~----~~~~~~~~~~~~~~~~------~~~lS~g~kqr~-iarall~~~~il~vllDEP~~~ld~~~~~----~~~~~  152 (190)
                      +..    ++....++...|+.+.      ...||.||+.|. +|+.+...|+++  +.||=.+.||+....    .+.++
T Consensus       476 l~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~--~iDEF~AhLD~~TA~rVArkisel  553 (593)
T COG2401         476 LRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVL--LIDEFAAHLDELTAVRVARKISEL  553 (593)
T ss_pred             HhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcE--EhhhhhhhcCHHHHHHHHHHHHHH
Confidence            211    1223455666666542      567999999995 999999999999  999999999988654    45555


Q ss_pred             HHc
Q 029613          153 ARA  155 (190)
Q Consensus       153 ~~~  155 (190)
                      .++
T Consensus       554 aRe  556 (593)
T COG2401         554 ARE  556 (593)
T ss_pred             HHH
Confidence            554

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.43  E-value=2.8e-13  Score=102.66  Aligned_cols=109  Identities=18%  Similarity=0.148  Sum_probs=70.2

Q ss_pred             cccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcC
Q 029613           23 QKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAG  102 (190)
Q Consensus        23 ~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  102 (190)
                      .+..+.++.++.|+|||||||||+++++...+-.. .+...- ......+.     +.+..... +              
T Consensus        14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~-~~~~~~-~~~~~~g~-----~~~~~~~~-~--------------   71 (162)
T cd03227          14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGA-QSATRR-RSGVKAGC-----IVAAVSAE-L--------------   71 (162)
T ss_pred             cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhc-chhhhc-cCcccCCC-----cceeeEEE-E--------------
Confidence            34445556799999999999999999987665222 111111 11111000     00000000 0              


Q ss_pred             cceeecccCccHHHH-HHHHHhCC----CCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          103 LICIASLISPYRKDR-DACRAMLP----DSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       103 ~~~~~~~lS~g~kqr-~iarall~----~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                       ......+|+|++|+ .+++++..    +|+++  ++|||++++|+.+...+.+.+.+.
T Consensus        72 -i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ll--llDEp~~gld~~~~~~l~~~l~~~  127 (162)
T cd03227          72 -IFTRLQLSGGEKELSALALILALASLKPRPLY--ILDEIDRGLDPRDGQALAEAILEH  127 (162)
T ss_pred             -ehheeeccccHHHHHHHHHHHHhcCCCCCCEE--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence             11112389999999 59999976    77999  999999999999999888887753

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.43  E-value=8.9e-14  Score=109.35  Aligned_cols=114  Identities=10%  Similarity=-0.039  Sum_probs=71.7

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHH
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVA   95 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   95 (190)
                      ...+.+++++++..|++++|+||||+||||+++++++...-..-|. ++.....      .           +..+.++.
T Consensus        15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~-~vpa~~~------~-----------l~~~d~I~   76 (204)
T cd03282          15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGC-FVPAEYA------T-----------LPIFNRLL   76 (204)
T ss_pred             CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCC-Ccchhhc------C-----------ccChhhee
Confidence            4568899999999999999999999999999999998653111121 1100000      0           00000111


Q ss_pred             HHHHHc-CcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHH
Q 029613           96 KLFADA-GLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGL  149 (190)
Q Consensus        96 ~~~~~~-~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~  149 (190)
                      ..+... ....-.+.+|.+++|...+.+++.+++++  +||||++++++.+...+
T Consensus        77 ~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lv--llDE~~~gt~~~~~~~l  129 (204)
T cd03282          77 SRLSNDDSMERNLSTFASEMSETAYILDYADGDSLV--LIDELGRGTSSADGFAI  129 (204)
T ss_pred             EecCCccccchhhhHHHHHHHHHHHHHHhcCCCcEE--EeccccCCCCHHHHHHH
Confidence            111100 11112345677888776666678889999  99999999988765443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=2.5e-13  Score=115.81  Aligned_cols=148  Identities=16%  Similarity=0.155  Sum_probs=96.6

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCcEEEEcCcccccc--------ccc
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILDGDNLRHG--------LNK   75 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g~i~~~g~~~~~~--------~~~   75 (190)
                      |.++|.+.+..++..+.+.|+.|-.|..++|+||||-|||||++.|+..-. -|....+.+....+...        +..
T Consensus       265 IKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~a  344 (807)
T KOG0066|consen  265 IKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKA  344 (807)
T ss_pred             ceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHh
Confidence            678888888888999999999999999999999999999999999987642 23344455554433210        000


Q ss_pred             c---cCCChh-------------hHHHHHHHHH-------------HHHHHHHHcCcce-----eecccCccHHHH-HHH
Q 029613           76 N---LGFSAE-------------DRTENIRRVG-------------EVAKLFADAGLIC-----IASLISPYRKDR-DAC  120 (190)
Q Consensus        76 ~---i~~~~~-------------~~~~~~~~~~-------------~~~~~~~~~~~~~-----~~~~lS~g~kqr-~ia  120 (190)
                      +   ..+..+             ...+.+..+.             ....++.-+|...     ....+|||-|.| .+|
T Consensus       345 D~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLA  424 (807)
T KOG0066|consen  345 DKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLA  424 (807)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHH
Confidence            0   000000             0011111110             1112222222221     134589998999 599


Q ss_pred             HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHH
Q 029613          121 RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLAR  154 (190)
Q Consensus       121 rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~  154 (190)
                      |||..+|-++  +|||||+.||...+..+-..++
T Consensus       425 RALflEPTLL--MLDEPTNHLDLNAVIWLdNYLQ  456 (807)
T KOG0066|consen  425 RALFLEPTLL--MLDEPTNHLDLNAVIWLDNYLQ  456 (807)
T ss_pred             HHHhcCceee--eecCCccccccceeeehhhHHh
Confidence            9999999999  9999999999888766654444

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.40  E-value=8.8e-13  Score=103.30  Aligned_cols=36  Identities=22%  Similarity=0.174  Sum_probs=31.3

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..+++++++..  |++++|+||||||||||+|+|++..
T Consensus        14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence            45678777776  6999999999999999999999866

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.39  E-value=2e-12  Score=96.04  Aligned_cols=142  Identities=22%  Similarity=0.277  Sum_probs=102.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCCChhhHHHHHHHHHHHHHHHHHcCcce
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGFSAEDRTENIRRVGEVAKLFADAGLIC  105 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (190)
                      .++.++|.+||||||+.++|...+.     --+++|++++..     ..+.+.+.++++..|+..++.....-...+-..
T Consensus        13 ~~i~vmGvsGsGKSTigk~L~~~l~-----~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~v   87 (191)
T KOG3354|consen   13 YVIVVMGVSGSGKSTIGKALSEELG-----LKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQGV   87 (191)
T ss_pred             eeEEEEecCCCChhhHHHHHHHHhC-----CcccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCeE
Confidence            3788999999999999999988772     228899998653     455677888899888888766554443455566


Q ss_pred             eecccCccHHHHHHHHHhCC--------CCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCce
Q 029613          106 IASLISPYRKDRDACRAMLP--------DSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRT  177 (190)
Q Consensus       106 ~~~~lS~g~kqr~iarall~--------~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~  177 (190)
                      +.++.+...+.|+|.|.-+.        +..+..++|-..+..+-.|.      .-|.||++..+.++++ |+..+.|+.
T Consensus        88 VlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl------~~R~gHFMp~~lleSQ-f~~LE~p~~  160 (191)
T KOG3354|consen   88 VLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRL------KKRKGHFMPADLLESQ-FATLEAPDA  160 (191)
T ss_pred             EEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHH------hhcccccCCHHHHHHH-HHhccCCCC
Confidence            67778888888999998444        34555557766554443222      2357999999999999 998888875


Q ss_pred             EEecCCccc
Q 029613          178 CKKKISATT  186 (190)
Q Consensus       178 ~~~~~~~~~  186 (190)
                        |+.|..+
T Consensus       161 --~e~div~  167 (191)
T KOG3354|consen  161 --DEEDIVT  167 (191)
T ss_pred             --CccceEE
Confidence              4444433

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.38  E-value=1e-12  Score=101.16  Aligned_cols=45  Identities=9%  Similarity=0.041  Sum_probs=40.4

Q ss_pred             cCccHHHH-HHHHHhC----CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          110 ISPYRKDR-DACRAML----PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       110 lS~g~kqr-~iarall----~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +|+|++|| .+||+++    .+|+++  ++|||++++|......+.+.+++.
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~ll--ilDEp~~~LD~~~~~~i~~~L~~~  144 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFY--VLDEIDAALDPTNRRRVSDMIKEM  144 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHH
Confidence            89999999 5999885    689999  999999999999999998888764

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.33  E-value=9.4e-13  Score=104.83  Aligned_cols=116  Identities=13%  Similarity=0.061  Sum_probs=72.9

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHH
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVA   95 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   95 (190)
                      ...+.++++++..++++++|+||||+||||+++.++-...-...|- ++-.+..      .++              .+.
T Consensus        16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~-~vpa~~~------~~~--------------~~~   74 (222)
T cd03285          16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGC-FVPCDSA------DIP--------------IVD   74 (222)
T ss_pred             CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCC-CcCcccE------EEe--------------ccc
Confidence            3467899999999999999999999999999999874321111110 1100000      000              000


Q ss_pred             HHHHHcCcce-eecccCccHHHH-HHHHHh--CCCCCeEEEEeeCC---chhhhhcChHHHH-HHHH
Q 029613           96 KLFADAGLIC-IASLISPYRKDR-DACRAM--LPDSNFIEVFMNMP---LELCEARDPKGLY-KLAR  154 (190)
Q Consensus        96 ~~~~~~~~~~-~~~~lS~g~kqr-~iaral--l~~~~il~vllDEP---~~~ld~~~~~~~~-~~~~  154 (190)
                      .++...++.. ....+|.+++++ .+++++  +.+|+++  +||||   |+++|........ +.+.
T Consensus        75 ~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLv--LLDEp~~gT~~lD~~~~~~~il~~l~  139 (222)
T cd03285          75 CILARVGASDSQLKGVSTFMAEMLETAAILKSATENSLI--IIDELGRGTSTYDGFGLAWAIAEYIA  139 (222)
T ss_pred             eeEeeeccccchhcCcChHHHHHHHHHHHHHhCCCCeEE--EEecCcCCCChHHHHHHHHHHHHHHH
Confidence            1111122211 134578888887 577777  8899999  99999   8889987654333 4443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.33  E-value=3.5e-12  Score=94.02  Aligned_cols=128  Identities=25%  Similarity=0.358  Sum_probs=101.4

Q ss_pred             ECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCCChhhHHHHHHHHHHHHHHHHHcCcceeeccc
Q 029613           36 TGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLI  110 (190)
Q Consensus        36 ~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  110 (190)
                      +|.+||||||+...|+..+   +  .-+++|++++..     +...+.+..+++..|+.++..........+-..++.+.
T Consensus         1 MGVsG~GKStvg~~lA~~l---g--~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CS   75 (161)
T COG3265           1 MGVSGSGKSTVGSALAERL---G--AKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACS   75 (161)
T ss_pred             CCCCccCHHHHHHHHHHHc---C--CceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecH
Confidence            4899999999999999876   2  348999998652     44557788999999999887766554444445567777


Q ss_pred             CccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCce
Q 029613          111 SPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRT  177 (190)
Q Consensus       111 S~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~  177 (190)
                      +.....|++.|.-..+-.|+  +|+-++..+-.|.      ..|+||++....++++ |+..+.|+-
T Consensus        76 ALKr~YRD~LR~~~~~~~Fv--~L~g~~~~i~~Rm------~~R~gHFM~~~ll~SQ-fa~LE~P~~  133 (161)
T COG3265          76 ALKRSYRDLLREANPGLRFV--YLDGDFDLILERM------KARKGHFMPASLLDSQ-FATLEEPGA  133 (161)
T ss_pred             HHHHHHHHHHhccCCCeEEE--EecCCHHHHHHHH------HhcccCCCCHHHHHHH-HHHhcCCCC
Confidence            78888899999888775555  9999998876555      5678999999999999 998888874

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.28  E-value=2e-11  Score=110.29  Aligned_cols=48  Identities=17%  Similarity=0.152  Sum_probs=42.4

Q ss_pred             ecccCccHHHH-HHHHHhCCCC---CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          107 ASLISPYRKDR-DACRAMLPDS---NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       107 ~~~lS~g~kqr-~iarall~~~---~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ...||||+.|| .+|..|....   -++  +|||||.+|-..|.+++.+.+.+.
T Consensus       820 atTLSGGEaQRvKLA~EL~k~~tg~TlY--iLDEPTTGLH~~Di~kLl~VL~rL  871 (935)
T COG0178         820 ATTLSGGEAQRVKLAKELSKRSTGKTLY--ILDEPTTGLHFDDIKKLLEVLHRL  871 (935)
T ss_pred             cccccchHHHHHHHHHHHhhccCCCeEE--EeCCCCCCCCHHHHHHHHHHHHHH
Confidence            56799999999 5999999988   788  999999999999999888777653

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.25  E-value=5.8e-11  Score=91.29  Aligned_cols=110  Identities=23%  Similarity=0.296  Sum_probs=66.6

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCCChhhHHHHHHHHHHHHHHHHHcCc
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGFSAEDRTENIRRVGEVAKLFADAGL  103 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (190)
                      +|++++|+|+|||||||++++|++++ .+    ++++|+++...     ....+++..+++..+...+......+...+-
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l-~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALF-SA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNE   76 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhc-CC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCC
Confidence            68999999999999999999999977 33    47888876431     1223444444433444444443322211111


Q ss_pred             ceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613          104 ICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARD  145 (190)
Q Consensus       104 ~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~  145 (190)
                      ...+.+.......|++++.....  +..|++|.|...+-.|.
T Consensus        77 ~g~iv~s~~~~~~R~~~r~~~~~--~~~v~l~a~~~~l~~Rl  116 (176)
T PRK09825         77 TGFIVCSSLKKQYRDILRKSSPN--VHFLWLDGDYETILARM  116 (176)
T ss_pred             CEEEEEEecCHHHHHHHHhhCCC--EEEEEEeCCHHHHHHHH
Confidence            11122333344566777766543  55559999998875554

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.25  E-value=5.3e-11  Score=97.35  Aligned_cols=48  Identities=8%  Similarity=0.027  Sum_probs=41.6

Q ss_pred             ecccCccHHHH-HHHHHh---------CCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          107 ASLISPYRKDR-DACRAM---------LPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       107 ~~~lS~g~kqr-~iaral---------l~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ...+|.|++|+ .+|+++         ..+|+++  +||||+++||+..++.+++.+++-
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~il--llDEp~a~LD~~~~~~l~~~l~~~  238 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVL--LLDDVLAELDLGRQAALLDAIEGR  238 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEE--EEcCcchhcCHHHHHHHHHHhhcC
Confidence            45589999999 588876         4789999  999999999999999999998763

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.24  E-value=3.6e-11  Score=98.60  Aligned_cols=46  Identities=7%  Similarity=-0.134  Sum_probs=39.6

Q ss_pred             ccCccHHHH-HHHHHhCC----CCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          109 LISPYRKDR-DACRAMLP----DSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       109 ~lS~g~kqr-~iarall~----~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+|+|++|| .+|++++.    +|+++  ++|||+++||+.....+.+.+++-
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vl--llDEp~~~Ld~~~~~~l~~~l~~~  220 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTL--IFDEIDTGISGEVAQAVGKKLKEL  220 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEE--EEECCccCCCHHHHHHHHHHHHHH
Confidence            489999999 58876443    99999  999999999999999999888764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.24  E-value=7.8e-12  Score=88.23  Aligned_cols=47  Identities=32%  Similarity=0.215  Sum_probs=42.4

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      ..++++++|++++|++++|+||||||||||++++.       .|.+.++|+++.
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~   48 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNV   48 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHH
Confidence            56899999999999999999999999999999975       567899998774

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.21  E-value=7.7e-12  Score=117.75  Aligned_cols=147  Identities=19%  Similarity=0.236  Sum_probs=104.9

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh--hCCCcEEEEcCccccccc-ccccCCChhh----------
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY--SRGKLSYILDGDNLRHGL-NKNLGFSAED----------   83 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~~~~g~i~~~g~~~~~~~-~~~i~~~~~~----------   83 (190)
                      ..++++++.-+++|+++.+.||+|||||||+++++|.+.  ..+.|.|.++|.+..+-. +..+.|..+.          
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr  207 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR  207 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence            468999999999999999999999999999999999874  234567889987653211 1111222211          


Q ss_pred             --------------------HHHHHHHHHHHHHHHHHcCcc---------eeecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613           84 --------------------RTENIRRVGEVAKLFADAGLI---------CIASLISPYRKDR-DACRAMLPDSNFIEVF  133 (190)
Q Consensus        84 --------------------~~~~~~~~~~~~~~~~~~~~~---------~~~~~lS~g~kqr-~iarall~~~~il~vl  133 (190)
                                          +.+..+.  ....++...|+.         +...-.|||||+| .++-.++..+.++  +
T Consensus       208 eTldFa~rck~~~~r~~~~~R~e~~~~--~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~--~  283 (1391)
T KOG0065|consen  208 ETLDFAARCKGPGSRYDEVSRREKLAA--MTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASIL--F  283 (1391)
T ss_pred             ehhhHHHhccCCccccccccHHHHHHH--HHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCccee--e
Confidence                                1221211  111233344443         2356699999999 5999999999999  9


Q ss_pred             eeCCchhhhhcChHHHHHHHHcC-CCCCccccccc
Q 029613          134 MNMPLELCEARDPKGLYKLARAG-KIKGLLSIFSF  167 (190)
Q Consensus       134 lDEP~~~ld~~~~~~~~~~~~~~-~~~~~~~~~~~  167 (190)
                      +||++.+||....-++.+.++.. |+.+.+-+-+.
T Consensus       284 ~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi  318 (1391)
T KOG0065|consen  284 WDEITRGLDSSTAFQIIKALRQLAHITGATALVSI  318 (1391)
T ss_pred             eecccccccHHHHHHHHHHHHHHHhhhcceEEEEe
Confidence            99999999999999999888763 66665555444

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.20  E-value=8.6e-11  Score=114.89  Aligned_cols=60  Identities=13%  Similarity=0.108  Sum_probs=47.4

Q ss_pred             HHHHHHcCccee-----ecccCccHHHH-HHHHHhCCC---CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           95 AKLFADAGLICI-----ASLISPYRKDR-DACRAMLPD---SNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        95 ~~~~~~~~~~~~-----~~~lS~g~kqr-~iarall~~---~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ...+.+.|+--+     ...||||+.|| .+|..|...   +.++  +|||||.+|++.+.+.+.+.+++.
T Consensus      1680 L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~ly--ilDEPt~GLh~~d~~~Ll~~l~~L 1748 (1809)
T PRK00635       1680 LQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLF--LLDEIATSLDNQQKSALLVQLRTL 1748 (1809)
T ss_pred             HHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEE--EEcCCCCCCCHHHHHHHHHHHHHH
Confidence            344555555322     56699999999 599999865   5788  999999999999999999887664

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.19  E-value=3e-11  Score=95.63  Aligned_cols=114  Identities=14%  Similarity=0.065  Sum_probs=63.2

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHH
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAK   96 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   96 (190)
                      ..+-.++++.-..+.+++|+||||+||||++|.+.....-...|.+.... ....      ++..+...    .+.    
T Consensus        16 ~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~-~~~~------~~~d~i~~----~l~----   80 (213)
T cd03281          16 SFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD-SATI------GLVDKIFT----RMS----   80 (213)
T ss_pred             ceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC-CcEE------eeeeeeee----eeC----
Confidence            34556667654444899999999999999999998432112344333321 1111      11111000    000    


Q ss_pred             HHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHH
Q 029613           97 LFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGL  149 (190)
Q Consensus        97 ~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~  149 (190)
                        ....+....+.+...+++..++++++.++.++  +||||++++|+.+...+
T Consensus        81 --~~~si~~~~S~f~~el~~l~~~l~~~~~~slv--llDE~~~gtd~~~~~~~  129 (213)
T cd03281          81 --SRESVSSGQSAFMIDLYQVSKALRLATRRSLV--LIDEFGKGTDTEDGAGL  129 (213)
T ss_pred             --CccChhhccchHHHHHHHHHHHHHhCCCCcEE--EeccccCCCCHHHHHHH
Confidence              00000000111222233336888889999999  99999999998764443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.15  E-value=3.8e-10  Score=90.34  Aligned_cols=126  Identities=14%  Similarity=0.159  Sum_probs=70.2

Q ss_pred             ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHH-HHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhH
Q 029613            6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTL-AFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDR   84 (190)
Q Consensus         6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTL-lr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~   84 (190)
                      .++++++.+++         .+++|+++.|+|+|||||||+ ++++++.+ ..+...+++..+.-           +++.
T Consensus         9 ~~~~ld~~l~g---------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi~~e~~-----------~~~~   67 (230)
T PRK08533          9 SRDELHKRLGG---------GIPAGSLILIEGDESTGKSILSQRLAYGFL-QNGYSVSYVSTQLT-----------TTEF   67 (230)
T ss_pred             EEeeeehhhCC---------CCCCCcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEeCCCC-----------HHHH
Confidence            45555555543         378999999999999999999 58888866 55666666654322           1222


Q ss_pred             HHHHHHHH-HHHHHHHHcCcc---eeecccCccHHHHH-H---HHH-hCCCCCeEEEEeeCCchhh----hhcChHHHHH
Q 029613           85 TENIRRVG-EVAKLFADAGLI---CIASLISPYRKDRD-A---CRA-MLPDSNFIEVFMNMPLELC----EARDPKGLYK  151 (190)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~~~~---~~~~~lS~g~kqr~-i---ara-ll~~~~il~vllDEP~~~l----d~~~~~~~~~  151 (190)
                      .++...+. .+.... ..+..   .....+++...++. +   ..+ -..+|+++  ++|||++.+    |+...+.+.+
T Consensus        68 ~~~~~~~g~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~l--VIDe~t~~l~~~~d~~~~~~l~~  144 (230)
T PRK08533         68 IKQMMSLGYDINKKL-ISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVI--IIDSLSSLISNDASEVAVNDLMA  144 (230)
T ss_pred             HHHHHHhCCchHHHh-hcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEE--EEECccHHhcCCcchHHHHHHHH
Confidence            22221111 111111 11111   11122444443332 2   111 12357888  999999998    5555566666


Q ss_pred             HHHc
Q 029613          152 LARA  155 (190)
Q Consensus       152 ~~~~  155 (190)
                      .++.
T Consensus       145 ~l~~  148 (230)
T PRK08533        145 FFKR  148 (230)
T ss_pred             HHHH
Confidence            6653

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.14  E-value=7.8e-10  Score=83.96  Aligned_cols=127  Identities=24%  Similarity=0.285  Sum_probs=71.1

Q ss_pred             ECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--cc-ccccCC--ChhhHHHHHHHHHHHHHHHHHc-Ccceeecc
Q 029613           36 TGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GL-NKNLGF--SAEDRTENIRRVGEVAKLFADA-GLICIASL  109 (190)
Q Consensus        36 ~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~-~~~i~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  109 (190)
                      +|+|||||||++++|++.+     |.++++++.+..  .. ....++  ...++..+...+.......... +...++ .
T Consensus         1 ~G~sGsGKSTla~~la~~l-----~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv-~   74 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV-C   74 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHh-----CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEE-E
Confidence            5999999999999999976     346888876421  11 111233  3333444555544444332222 222233 3


Q ss_pred             cCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccc--cCCCCCCc
Q 029613          110 ISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFC--YYEKLIPR  176 (190)
Q Consensus       110 lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~p~  176 (190)
                      .......|+.++.  ..+++..|+++.|.+.|..|.      ..|.++++...-+..+.  ||+|+..+
T Consensus        75 s~~~~~~r~~~~~--~~~~~~~v~l~a~~~~l~~Rl------~~R~~~~a~~~vl~~Q~~~~ep~~~~e  135 (163)
T PRK11545         75 SALKKHYRDLLRE--GNPNLSFIYLKGDFDVIESRL------KARKGHFFKTQMLVTQFETLQEPGADE  135 (163)
T ss_pred             ecchHHHHHHHHc--cCCCEEEEEEECCHHHHHHHH------HhccCCCCCHHHHHHHHHHcCCCCCCC
Confidence            3334455667776  445677779999999987663      22334444433333332  66665433

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.13  E-value=2.3e-10  Score=93.54  Aligned_cols=39  Identities=26%  Similarity=0.245  Sum_probs=35.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      .-++|+||||||||||+++|+|.+ .+++|.+.++|.++.
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~-~~~~G~i~~~g~~v~  150 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARIL-STGISQLGLRGKKVG  150 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCcc-CCCCceEEECCEEee
Confidence            578999999999999999999988 789999999998875

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.10  E-value=3.4e-11  Score=93.21  Aligned_cols=97  Identities=18%  Similarity=0.097  Sum_probs=54.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCc----ceee
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGL----ICIA  107 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  107 (190)
                      ++.|+||||+||||++|.+.-...-...|..... ....      +++..+              ++...+.    ..-.
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a-~~~~------~~~~d~--------------il~~~~~~d~~~~~~   59 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPA-ESAE------LPVFDR--------------IFTRIGASDSLAQGL   59 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeee-hheE------ecccce--------------EEEEeCCCCchhccc
Confidence            3679999999999999999843322233322211 1110      011110              0001111    1112


Q ss_pred             cccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHH
Q 029613          108 SLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYK  151 (190)
Q Consensus       108 ~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~  151 (190)
                      +.+|.+++|...+...+.+|+++  ++|||++++|+.+...+..
T Consensus        60 s~fs~~~~~l~~~l~~~~~~~ll--llDEp~~g~d~~~~~~~~~  101 (185)
T smart00534       60 STFMVEMKETANILKNATENSLV--LLDELGRGTSTYDGVAIAA  101 (185)
T ss_pred             cHHHHHHHHHHHHHHhCCCCeEE--EEecCCCCCCHHHHHHHHH
Confidence            34566666653333334589999  9999999999987766543

>TIGR01069 mutS2 MutS2 family protein

Probab=99.09  E-value=5.1e-11  Score=109.79  Aligned_cols=114  Identities=12%  Similarity=0.033  Sum_probs=69.1

Q ss_pred             cccccCCc-cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHc
Q 029613           23 QKLLNQKG-CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADA  101 (190)
Q Consensus        23 ~sl~i~~G-eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  101 (190)
                      +++.+..+ .+++|+||||+||||++|.|++...-+..|...--+....      +++..+-.    ..+..      ..
T Consensus       314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~------~~~~d~i~----~~i~~------~~  377 (771)
T TIGR01069       314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSE------IPYFEEIF----ADIGD------EQ  377 (771)
T ss_pred             ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcccc------ccchhhee----eecCh------Hh
Confidence            67888777 8999999999999999999999832223331111111100      01100000    00000      00


Q ss_pred             CcceeecccCccHHHHH-HHHHhCCCCCeEEEEeeCCchhhhhcChHHHH-HHHHc
Q 029613          102 GLICIASLISPYRKDRD-ACRAMLPDSNFIEVFMNMPLELCEARDPKGLY-KLARA  155 (190)
Q Consensus       102 ~~~~~~~~lS~g~kqr~-iarall~~~~il~vllDEP~~~ld~~~~~~~~-~~~~~  155 (190)
                      .+....+.+|++++++. +++++ .++.++  +||||++++|+.+...+. +.++.
T Consensus       378 si~~~LStfS~~m~~~~~il~~~-~~~sLv--LlDE~g~GtD~~eg~ala~aiLe~  430 (771)
T TIGR01069       378 SIEQNLSTFSGHMKNISAILSKT-TENSLV--LFDELGAGTDPDEGSALAISILEY  430 (771)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHhc-CCCcEE--EecCCCCCCCHHHHHHHHHHHHHH
Confidence            11122445788888884 66655 678999  999999999999887773 44443

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.08  E-value=5.5e-11  Score=103.06  Aligned_cols=51  Identities=18%  Similarity=0.199  Sum_probs=43.8

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCc-EEEEcCcccc
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL-SYILDGDNLR   70 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g-~i~~~g~~~~   70 (190)
                      ..+|+++|+++++||+++|+||||||||||++  .++. .+.+| .|.++|.++.
T Consensus        19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~-~~~sGg~I~ldg~~~~   70 (504)
T TIGR03238        19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR-KFSEGYEFFLDATHSF   70 (504)
T ss_pred             HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC-CCCCCCEEEECCEECC
Confidence            35799999999999999999999999999999  5655 45555 7999998774

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.06  E-value=5.4e-10  Score=95.22  Aligned_cols=134  Identities=12%  Similarity=0.059  Sum_probs=78.0

Q ss_pred             eccCc-cccccccccccCCc-----cEEEEECCCCCcHHHHHHHHHHHHhhCCCc-EEEEcCccccc-ccccccCCCh-h
Q 029613           12 WQESP-IGRLERQKLLNQKG-----CVVWITGLSGSGKSTLAFSVNKELYSRGKL-SYILDGDNLRH-GLNKNLGFSA-E   82 (190)
Q Consensus        12 ~~~~~-~~~l~~~sl~i~~G-----eii~L~G~nGsGKSTLlr~l~g~l~~~~~g-~i~~~g~~~~~-~~~~~i~~~~-~   82 (190)
                      +.|.+ +.-+.++.|.+..|     |++..+|.||.||||++++++|.+ +++.| ++-.-.-.+.. ..+....-.. +
T Consensus       343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~-~pd~~~e~p~lnVSykpqkispK~~~tvR~  421 (592)
T KOG0063|consen  343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRL-KPDEGGEIPVLNVSYKPQKISPKREGTVRQ  421 (592)
T ss_pred             eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCC-CCCccCcccccceeccccccCccccchHHH
Confidence            34543 34567888888877     577899999999999999999987 45443 22211111100 0000000000 0


Q ss_pred             hHHHHHH-------HHHHHHHHHHHcCc-ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHH
Q 029613           83 DRTENIR-------RVGEVAKLFADAGL-ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKG  148 (190)
Q Consensus        83 ~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~  148 (190)
                      -..+.++       .+.++..-+....+ ..-+..+|||+.|| ++|..+=..++++  +.|||.+-||+..+..
T Consensus       422 ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvY--liDEpsAylDSeQRi~  494 (592)
T KOG0063|consen  422 LLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVY--LIDEPSAYLDSEQRII  494 (592)
T ss_pred             HHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceE--EecCchhhcChHHHHH
Confidence            0111111       00111111111111 12367799999999 6999888888999  9999999999886644

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.05  E-value=1.3e-09  Score=86.34  Aligned_cols=37  Identities=24%  Similarity=0.108  Sum_probs=33.1

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..+.+++++...+ ++++|+|||||||||++|.+++..
T Consensus        18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~   54 (216)
T cd03284          18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA   54 (216)
T ss_pred             ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence            3578999999887 999999999999999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.02  E-value=1.6e-09  Score=85.38  Aligned_cols=41  Identities=20%  Similarity=0.146  Sum_probs=36.9

Q ss_pred             HHHH-HHHHHhCCCCCeEEEEeeCCc-----hhhhhcChHHHHHHHHcC
Q 029613          114 RKDR-DACRAMLPDSNFIEVFMNMPL-----ELCEARDPKGLYKLARAG  156 (190)
Q Consensus       114 ~kqr-~iarall~~~~il~vllDEP~-----~~ld~~~~~~~~~~~~~~  156 (190)
                      ++++ .+|++++.+|+++  ++||||     ++||+..++.+.+.+++-
T Consensus       157 ~~~f~~ia~~l~~~p~~~--~ldEp~~~~~~~~ld~~~~~~~~~~~~~~  203 (215)
T PTZ00132        157 EKPFLWLARRLTNDPNLV--FVGAPALAPEEIQIDPELVAQAEKELQAA  203 (215)
T ss_pred             HHHHHHHHHHHhhcccce--ecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence            5556 5999999999999  999999     999999999999988874

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.99  E-value=8.8e-09  Score=78.82  Aligned_cols=143  Identities=18%  Similarity=0.143  Sum_probs=78.7

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccccc-------ccCCC------hhhHHHH-HHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNK-------NLGFS------AEDRTEN-IRRVGEV   94 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~-------~i~~~------~~~~~~~-~~~~~~~   94 (190)
                      +|.++.|.|++||||||+++.|...+..   ..+.++.+++...+..       .+.+.      ++..... .......
T Consensus         1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~   77 (175)
T cd00227           1 TGRIIILNGGSSAGKSSIARALQSVLAE---PWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEA   77 (175)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCC---CccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHH
Confidence            5789999999999999999999886521   1233444433221110       11111      1111111 1112222


Q ss_pred             HHHHHHcCcceeecccCc-cHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccc-cccccCCC
Q 029613           95 AKLFADAGLICIASLISP-YRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI-FSFCYYEK  172 (190)
Q Consensus        95 ~~~~~~~~~~~~~~~lS~-g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p  172 (190)
                      ...+...|...++..... ....|..++.+.. .++..|+++.|...|..|..+      |..+..++... ... ++.|
T Consensus        78 ~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~-~~~~~v~l~~~~~~l~~R~~~------R~~~~~~~~~~~~~~-~~~~  149 (175)
T cd00227          78 VAAMARAGANVIADDVFLGRAALQDCWRSFVG-LDVLWVGVRCPGEVAEGRETA------RGDRVPGQARKQARV-VHAG  149 (175)
T ss_pred             HHHHHhCCCcEEEeeeccCCHHHHHHHHHhcC-CCEEEEEEECCHHHHHHHHHh------cCCccchHHHHHHHH-hcCC
Confidence            333445676666554333 4444555666554 567777999999888766643      22233333332 223 5567


Q ss_pred             CCCceEEecC
Q 029613          173 LIPRTCKKKI  182 (190)
Q Consensus       173 ~~p~~~~~~~  182 (190)
                      ..+++++|--
T Consensus       150 ~~~dl~iDts  159 (175)
T cd00227         150 VEYDLEVDTT  159 (175)
T ss_pred             CcceEEEECC
Confidence            7788988863

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.99  E-value=1.5e-09  Score=86.42  Aligned_cols=48  Identities=21%  Similarity=0.045  Sum_probs=40.2

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL   64 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~   64 (190)
                      ..+.+++++.+.+|+++.|+||||+||||+++++++....+..|.+..
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~   65 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP   65 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            467899999999999999999999999999999999443455565443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=98.94  E-value=7.6e-09  Score=78.04  Aligned_cols=106  Identities=21%  Similarity=0.331  Sum_probs=59.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCCChhhHHHHHHHHHHHHHHHHHcCcceee
Q 029613           33 VWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIA  107 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (190)
                      +.|+||+||||||+++.|++.+     +.++++++++...     .....++..++...+...+.+........+...++
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l-----~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi   75 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRL-----GAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGII   75 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhc-----CCeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            4689999999999999999865     2467888876421     11122334444444444444333322222322232


Q ss_pred             cccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613          108 SLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARD  145 (190)
Q Consensus       108 ~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~  145 (190)
                      .........|..++.  ..+++..++||-|...+-.|.
T Consensus        76 ~~t~~~~~~r~~~~~--~~~~~~~i~l~~~~e~~~~R~  111 (163)
T TIGR01313        76 TCSALKRHYRDILRE--AEPNLHFIYLSGDKDVILERM  111 (163)
T ss_pred             EecccHHHHHHHHHh--cCCCEEEEEEeCCHHHHHHHH
Confidence            222222334555552  345555559999988875554

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.93  E-value=3e-09  Score=91.89  Aligned_cols=122  Identities=20%  Similarity=0.119  Sum_probs=76.7

Q ss_pred             ccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhH
Q 029613            6 NSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDR   84 (190)
Q Consensus         6 ~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~   84 (190)
                      +.+.++..+. +..+++.+ +.+.+|+.++|+|+||+|||||+++|++.. .++.+.+.+.|+.-.+            .
T Consensus       132 ~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~~~~gvI~~iGerg~e------------v  197 (432)
T PRK06793        132 EREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNA-KADINVISLVGERGRE------------V  197 (432)
T ss_pred             heechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccC-CCCeEEEEeCCCCccc------------H
Confidence            4455555554 46778885 999999999999999999999999999976 6677777665543321            1


Q ss_pred             HHHHHHHHHHHHHHHHcCcceeecccCccHHHHH--HHHHhC------CCCCeEEEEeeCCchhhhhc
Q 029613           85 TENIRRVGEVAKLFADAGLICIASLISPYRKDRD--ACRAML------PDSNFIEVFMNMPLELCEAR  144 (190)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~--iarall------~~~~il~vllDEP~~~ld~~  144 (190)
                      .+.+.....-.. +...-+....+..|+++++|.  .|.+++      .++-++  ++|+||..++..
T Consensus       198 ~e~~~~~l~~~g-l~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLl--ilDslTr~a~A~  262 (432)
T PRK06793        198 KDFIRKELGEEG-MRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLL--MMDSVTRFADAR  262 (432)
T ss_pred             HHHHHHHhhhcc-cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEE--EecchHHHHHHH
Confidence            121111000000 111111222455788999983  333331      444555  999999998764

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=98.92  E-value=1.1e-08  Score=76.11  Aligned_cols=109  Identities=25%  Similarity=0.318  Sum_probs=60.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCCChhhHHHHHHHHHHHH-HHHHHcCcce
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGFSAEDRTENIRRVGEVA-KLFADAGLIC  105 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  105 (190)
                      +++|.|++||||||+++.|...+     +..+++++.+...     ......+...+...+...+.... ..+...+...
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v   75 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGV   75 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCE
Confidence            47899999999999999998853     2357787776542     11122233333334444433222 1111123222


Q ss_pred             eecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613          106 IASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARD  145 (190)
Q Consensus       106 ~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~  145 (190)
                      +.......+.+|..+++++....+..++++.|...+..|.
T Consensus        76 Vid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~  115 (150)
T cd02021          76 VVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERL  115 (150)
T ss_pred             EEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHH
Confidence            3322223344555566665555666669999988775554

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=98.84  E-value=5.2e-09  Score=82.70  Aligned_cols=45  Identities=16%  Similarity=0.143  Sum_probs=34.1

Q ss_pred             ccCccHHHH-H----HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          109 LISPYRKDR-D----ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       109 ~lS~g~kqr-~----iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      .+|+||+.. +    +|..-....+++  +|||+.++||...++.+.+++++
T Consensus       136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~--ilDEvd~~LD~~~~~~l~~~l~~  185 (220)
T PF02463_consen  136 FLSGGEKSLVALALLLALQRYKPSPFL--ILDEVDAALDEQNRKRLADLLKE  185 (220)
T ss_dssp             GS-HHHHHHHHHHHHHHHHTCS--SEE--EEESTTTTS-HHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccc--ccccccccccccccccccccccc
Confidence            799999887 2    334445566899  99999999999999999999986

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PRK00064 recF recombination protein F; Reviewed

Probab=98.84  E-value=1.9e-08  Score=85.61  Aligned_cols=46  Identities=4%  Similarity=-0.003  Sum_probs=39.8

Q ss_pred             cccCccHHHH-HHHHHhC---------CCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          108 SLISPYRKDR-DACRAML---------PDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       108 ~~lS~g~kqr-~iarall---------~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      ..+|.||+++ .+|+.++         .+|+++  +||||+++||+..++.+++.+.+
T Consensus       272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~il--LlDd~~s~LD~~~~~~l~~~l~~  327 (361)
T PRK00064        272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPIL--LLDDVASELDDGRRAALLERLKG  327 (361)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEE--EEccchhhhCHHHHHHHHHHHhc
Confidence            4589999888 5877774         789999  99999999999999999988875

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.78  E-value=7.9e-08  Score=77.81  Aligned_cols=117  Identities=18%  Similarity=0.172  Sum_probs=66.9

Q ss_pred             cccCCccEEEEECCCCCcHHHHHHHHHHHHhhC-CCcEEE---EcC--ccccc---cc-----ccccCCChhhHHHHHHH
Q 029613           25 LLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR-GKLSYI---LDG--DNLRH---GL-----NKNLGFSAEDRTENIRR   90 (190)
Q Consensus        25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~-~~g~i~---~~g--~~~~~---~~-----~~~i~~~~~~~~~~~~~   90 (190)
                      +.+.+|+.++|+|++|+|||||++.|++.+... ....++   +..  .++..   .+     ....+-.+.........
T Consensus        11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~   90 (249)
T cd01128          11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEM   90 (249)
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHH
Confidence            467899999999999999999999999877322 122222   222  11111   11     11111122221111111


Q ss_pred             HHHHHHHHHHcCcc--------------------eeecccCccH--------HHH-HHHHHhCCCCCeEEEEeeCCchhh
Q 029613           91 VGEVAKLFADAGLI--------------------CIASLISPYR--------KDR-DACRAMLPDSNFIEVFMNMPLELC  141 (190)
Q Consensus        91 ~~~~~~~~~~~~~~--------------------~~~~~lS~g~--------kqr-~iarall~~~~il~vllDEP~~~l  141 (190)
                      ....+..+...|..                    .....+|+|+        +|+ ++||++..++++.  +|  ||+.+
T Consensus        91 ~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt--~l--~T~~~  166 (249)
T cd01128          91 VLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLT--II--ATALV  166 (249)
T ss_pred             HHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceE--Ee--eehee
Confidence            22222222222211                    1134468899        899 7999998999998  77  99999


Q ss_pred             hhcC
Q 029613          142 EARD  145 (190)
Q Consensus       142 d~~~  145 (190)
                      |..+
T Consensus       167 d~~~  170 (249)
T cd01128         167 DTGS  170 (249)
T ss_pred             cCCC
Confidence            8543

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.78  E-value=6.9e-09  Score=88.55  Aligned_cols=126  Identities=17%  Similarity=0.140  Sum_probs=76.9

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEE-----------EcCcccccc----cccc--cCCChhhHHHH--
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI-----------LDGDNLRHG----LNKN--LGFSAEDRTEN--   87 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~-----------~~g~~~~~~----~~~~--i~~~~~~~~~~--   87 (190)
                      -++|++.+++|-||-||||-+++++|.+ +|.-|...           +.|..+...    +..+  ....++.....  
T Consensus        97 prpg~vlglvgtngigkstAlkilagk~-kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr  175 (592)
T KOG0063|consen   97 PRPGQVLGLVGTNGIGKSTALKILAGKQ-KPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR  175 (592)
T ss_pred             CCcchhccccccCcccHHHHHHHHhCCC-CCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence            3789999999999999999999999988 55544211           111111000    0000  00111111100  


Q ss_pred             ---------HHH------HHHHHHHHHHcCc-ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHH
Q 029613           88 ---------IRR------VGEVAKLFADAGL-ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLY  150 (190)
Q Consensus        88 ---------~~~------~~~~~~~~~~~~~-~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~  150 (190)
                               +.+      ..++...++...+ ..-+..+|||+-|| ++|.+.+..+++.  ++|||.+-||.+.+...-
T Consensus       176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advy--MFDEpSsYLDVKQRLkaA  253 (592)
T KOG0063|consen  176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVY--MFDEPSSYLDVKQRLKAA  253 (592)
T ss_pred             HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhccee--EecCCcccchHHHhhhHH
Confidence                     000      0111111111111 12367799999999 7999999999999  999999999988776666


Q ss_pred             HHHHc
Q 029613          151 KLARA  155 (190)
Q Consensus       151 ~~~~~  155 (190)
                      ..+++
T Consensus       254 ~~IRs  258 (592)
T KOG0063|consen  254 ITIRS  258 (592)
T ss_pred             HHHHH
Confidence            66665

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.78  E-value=2.4e-09  Score=85.01  Aligned_cols=39  Identities=23%  Similarity=0.095  Sum_probs=35.9

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ...+.++++|..++|+++.|+||||+||||+++.++...
T Consensus        16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~   54 (218)
T cd03286          16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV   54 (218)
T ss_pred             CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence            456789999999999999999999999999999999875

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.77  E-value=6.7e-09  Score=80.36  Aligned_cols=47  Identities=19%  Similarity=0.163  Sum_probs=40.2

Q ss_pred             cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613           19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG   66 (190)
Q Consensus        19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g   66 (190)
                      ..+=+.+.+++|+.++|+|||||||||++++|++.+ ++..+.+.+.+
T Consensus        14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i-~~~~~~i~ied   60 (186)
T cd01130          14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI-PPDERIITIED   60 (186)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEECC
Confidence            445567788999999999999999999999999988 57778887754

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK13695 putative NTPase; Provisional

Probab=98.75  E-value=5.1e-09  Score=80.04  Aligned_cols=119  Identities=20%  Similarity=0.248  Sum_probs=62.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHH-H-HHcCcceeecc
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKL-F-ADAGLICIASL  109 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~  109 (190)
                      .++|+|+||||||||++.|.+.+...+.-..-+-.+++.. .....++...+...  .....+... + ...........
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~~~~~~-~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~   78 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVRE-GGKRIGFKIIDLDT--GEEGILARVGFPSRPRVGKYVVN   78 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEcHHHHh-cCCccceEEEEcCC--CCeEEccccCCCCCCceeeEEEe
Confidence            4789999999999999999987743222111011111110 00011111110000  000000000 0 01111223445


Q ss_pred             cCccHHHH-HHHHHhCCCCCeEEEEeeC--CchhhhhcChHHHHHHHHc
Q 029613          110 ISPYRKDR-DACRAMLPDSNFIEVFMNM--PLELCEARDPKGLYKLARA  155 (190)
Q Consensus       110 lS~g~kqr-~iarall~~~~il~vllDE--P~~~ld~~~~~~~~~~~~~  155 (190)
                      +|++++-. .+++..+.+|+++  ++||  |+..++....+.+.+.++.
T Consensus        79 lsgle~~~~~l~~~~l~~~~~l--llDE~~~~e~~~~~~~~~l~~~~~~  125 (174)
T PRK13695         79 LEDLERIGIPALERALEEADVI--IIDEIGKMELKSPKFVKAVEEVLDS  125 (174)
T ss_pred             hHHHHHHHHHHHHhccCCCCEE--EEECCCcchhhhHHHHHHHHHHHhC
Confidence            77887777 5777788899998  9999  7777776666666666644

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.74  E-value=8.7e-08  Score=73.84  Aligned_cols=137  Identities=19%  Similarity=0.164  Sum_probs=72.9

Q ss_pred             ccccccccc--cccCCccEEEEECCCCCcHHHHHHHHHHHHh--hCCCcE-EEEcCcccccccccc----------cCCC
Q 029613           16 PIGRLERQK--LLNQKGCVVWITGLSGSGKSTLAFSVNKELY--SRGKLS-YILDGDNLRHGLNKN----------LGFS   80 (190)
Q Consensus        16 ~~~~l~~~s--l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~--~~~~g~-i~~~g~~~~~~~~~~----------i~~~   80 (190)
                      +.++++.+-  +++++ -|+.|+|.||+|||||+-+|+-..-  ..|.+. .....+.....+...          .++-
T Consensus        22 slPa~r~l~~~LeF~a-pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~F  100 (233)
T COG3910          22 SLPAFRHLEERLEFRA-PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFF  100 (233)
T ss_pred             cchHHHhhhhhccccC-ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceE
Confidence            456666554  44443 6999999999999999999976542  223221 111111110000000          0000


Q ss_pred             hhhHHHHHHHHHHHHHHHHHcCcce-e----ecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613           81 AEDRTENIRRVGEVAKLFADAGLIC-I----ASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                        -+.+..   ..++..+++..-.. +    ...-|-|+--..+...-.+...++  +||||-++|.+.-+-.+.++++.
T Consensus       101 --lRAEs~---yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~~~GiY--iLDEPEa~LSp~RQlella~l~~  173 (233)
T COG3910         101 --LRAESF---YNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRFNGQGIY--ILDEPEAALSPSRQLELLAILRD  173 (233)
T ss_pred             --EehhHH---HHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHHhccCceE--EecCccccCCHHHHHHHHHHHHH
Confidence              011111   11222222211111 1    233567776665444445566899  99999999999888777777776


Q ss_pred             CCCCC
Q 029613          156 GKIKG  160 (190)
Q Consensus       156 ~~~~~  160 (190)
                      ..-+|
T Consensus       174 la~sG  178 (233)
T COG3910         174 LADSG  178 (233)
T ss_pred             HHhcC
Confidence            54444

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.71  E-value=1e-07  Score=73.03  Aligned_cols=111  Identities=18%  Similarity=0.182  Sum_probs=60.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcce----ee
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLIC----IA  107 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  107 (190)
                      ++.|.|++|+||||++-.++-.....+...+++.-+.-           .++..++...++--...+...+...    .+
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~-----------~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~   69 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES-----------PEELIENAESLGWDLERLEDEGLLAIVDADP   69 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC-----------HHHHHHHHHHcCCChHHHHhcCCeEEEecCc
Confidence            36789999999999987664433244555556543221           1222222211111111122223222    14


Q ss_pred             cccCccHHH------HHHHH-HhCCCCCeEEEEeeCCchhhh---hcChHHHHHHHHc
Q 029613          108 SLISPYRKD------RDACR-AMLPDSNFIEVFMNMPLELCE---ARDPKGLYKLARA  155 (190)
Q Consensus       108 ~~lS~g~kq------r~iar-all~~~~il~vllDEP~~~ld---~~~~~~~~~~~~~  155 (190)
                      ..+|+++.|      ..+.+ ....+|+++  ++|||++.++   ......+...++.
T Consensus        70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~l--viD~~~~~~~~~~~~~~~~i~~l~~~  125 (187)
T cd01124          70 DEIGPAESSLRLELIQRLKDAIEEFKAKRV--VIDSVSGLLLMEQSTARLEIRRLLFA  125 (187)
T ss_pred             cccchhhhhhhHHHHHHHHHHHHHhCCCEE--EEeCcHHHhhcChHHHHHHHHHHHHH
Confidence            456888777      33333 344678999  9999999998   4444444444443

A related protein is found in archaea.

>PRK06762 hypothetical protein; Provisional

Probab=98.70  E-value=9e-08  Score=72.36  Aligned_cols=110  Identities=16%  Similarity=0.196  Sum_probs=57.1

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceeecc
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASL  109 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (190)
                      +.+++|.|++||||||+++.|+..+ .  .+.++++.+.+...+...........   ...+.+........+...+...
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l-~--~~~~~i~~D~~r~~l~~~~~~~~~~~---~~~~~~~~~~~~~~g~~vild~   75 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERL-G--RGTLLVSQDVVRRDMLRVKDGPGNLS---IDLIEQLVRYGLGHCEFVILEG   75 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh-C--CCeEEecHHHHHHHhccccCCCCCcC---HHHHHHHHHHHHhCCCEEEEch
Confidence            3689999999999999999999866 2  35667787766543211110000001   1111222222222343333322


Q ss_pred             cCccHHHHHHHHHhCC--CCCeEEEEeeCCchhhhhcC
Q 029613          110 ISPYRKDRDACRAMLP--DSNFIEVFMNMPLELCEARD  145 (190)
Q Consensus       110 lS~g~kqr~iarall~--~~~il~vllDEP~~~ld~~~  145 (190)
                      .......+.+.+.+..  ..++..++||.|...+-.|.
T Consensus        76 ~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~  113 (166)
T PRK06762         76 ILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRH  113 (166)
T ss_pred             hhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHH
Confidence            2112222333333332  22455569999988876554

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.70  E-value=9.2e-08  Score=74.78  Aligned_cols=98  Identities=18%  Similarity=0.230  Sum_probs=55.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceeecccC
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLIS  111 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS  111 (190)
                      ++.|+||+||||||+++.|.+.+.....+.+..-++++..        ..+...   ..+.+     ...+.       .
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~--------~~~~~~---~~i~q-----~~vg~-------~   59 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEF--------VHESKR---SLINQ-----REVGL-------D   59 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccc--------cccCcc---ceeee-----cccCC-------C
Confidence            6789999999999999999988744445555554444321        000000   00000     00000       0


Q ss_pred             ccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          112 PYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       112 ~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      ...-...+.+++..+|+++  ++||+.+   ......+.+.+..|+
T Consensus        60 ~~~~~~~i~~aLr~~pd~i--i~gEird---~e~~~~~l~~a~~G~  100 (198)
T cd01131          60 TLSFENALKAALRQDPDVI--LVGEMRD---LETIRLALTAAETGH  100 (198)
T ss_pred             ccCHHHHHHHHhcCCcCEE--EEcCCCC---HHHHHHHHHHHHcCC
Confidence            1112235888888999999  9999963   223334444555444

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.69  E-value=3.5e-09  Score=97.92  Aligned_cols=106  Identities=14%  Similarity=0.047  Sum_probs=62.3

Q ss_pred             cccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcE-EEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHH
Q 029613           21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLS-YILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFA   99 (190)
Q Consensus        21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~-i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   99 (190)
                      .++++. ..+.++.|+|||++||||++|.+.....-...|- |..... .      .+++...              ++.
T Consensus       319 ndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~-~------~i~~~~~--------------i~~  376 (782)
T PRK00409        319 KDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEP-S------EIPVFKE--------------IFA  376 (782)
T ss_pred             ceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCC-c------cccccce--------------EEE
Confidence            344443 3457889999999999999999965421112221 111100 0      0000000              000


Q ss_pred             HcC----cceeecccCccHHHHH-HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHH
Q 029613          100 DAG----LICIASLISPYRKDRD-ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYK  151 (190)
Q Consensus       100 ~~~----~~~~~~~lS~g~kqr~-iarall~~~~il~vllDEP~~~ld~~~~~~~~~  151 (190)
                      ..+    +....+.+|++++++. +++++ .+|.++  +||||++++|+.+...+..
T Consensus       377 ~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLv--LlDE~~~GtDp~eg~ala~  430 (782)
T PRK00409        377 DIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLV--LFDELGAGTDPDEGAALAI  430 (782)
T ss_pred             ecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEE--EecCCCCCCCHHHHHHHHH
Confidence            111    1112345788898884 77776 778898  9999999999988776643

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.65  E-value=7e-08  Score=80.46  Aligned_cols=42  Identities=24%  Similarity=0.310  Sum_probs=35.8

Q ss_pred             cccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613           23 QKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD   65 (190)
Q Consensus        23 ~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~   65 (190)
                      +++.++.|+.+.|+|++||||||++++|++.+ ++..+.+.++
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~-~~~~~iv~ie  178 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEI-PKDERIITIE  178 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccC-CccccEEEEc
Confidence            45778899999999999999999999999987 5666766664

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.63  E-value=2.1e-07  Score=71.92  Aligned_cols=36  Identities=25%  Similarity=0.549  Sum_probs=28.3

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      |++++|+||||||||||+++|++.+ .+   .+.+.+..+
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~-~~---~~~~~~~~~   37 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQRE-QT---QLLVAHRYI   37 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccC-CC---eEEEcCEEC
Confidence            7899999999999999999999865 22   355555444

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.62  E-value=7.2e-08  Score=75.05  Aligned_cols=23  Identities=43%  Similarity=0.602  Sum_probs=21.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +++|+|+||||||||+++|.+++
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999987

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.61  E-value=5.4e-07  Score=75.45  Aligned_cols=42  Identities=19%  Similarity=0.295  Sum_probs=32.9

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      -.+|++++++|||||||||++..|++.+. +..+.|.+-+.+.
T Consensus       111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D~  152 (318)
T PRK10416        111 EKKPFVILVVGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGDT  152 (318)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecCc
Confidence            35789999999999999999999999884 4445565544443

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.61  E-value=1.5e-07  Score=67.24  Aligned_cols=96  Identities=22%  Similarity=0.231  Sum_probs=54.9

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceeec
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIAS  108 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (190)
                      ++..+.|+||+|+||||+++.|+..+.....+.++++........       ....   .      ....     .....
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---~------~~~~-----~~~~~   59 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEV-------LDQL---L------LIIV-----GGKKA   59 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccC-------HHHH---H------hhhh-----hccCC
Confidence            367899999999999999999999774333245666655433210       0000   0      0000     00011


Q ss_pred             ccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChH
Q 029613          109 LISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPK  147 (190)
Q Consensus       109 ~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~  147 (190)
                      ...+.+..+ .+.++-...+.++  ++||+....+.....
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~vi--iiDei~~~~~~~~~~   97 (148)
T smart00382       60 SGSGELRLRLALALARKLKPDVL--ILDEITSLLDAEQEA   97 (148)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCEE--EEECCcccCCHHHHH
Confidence            223333344 3555555556888  999998876555443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.58  E-value=5e-08  Score=84.62  Aligned_cols=61  Identities=18%  Similarity=0.037  Sum_probs=51.3

Q ss_pred             ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613            4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG   66 (190)
Q Consensus         4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g   66 (190)
                      .++.+++++.|. +..+++.++ .+.+|+.++|+|+||||||||+++|+++. .+..|.+.+.|
T Consensus       139 ~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~-~pd~gvv~liG  200 (450)
T PRK06002        139 AMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD-AFDTVVIALVG  200 (450)
T ss_pred             CeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCeeeeeecc
Confidence            457778888884 678899886 89999999999999999999999999966 66777777643

>TIGR00235 udk uridine kinase

Probab=98.57  E-value=6.8e-08  Score=75.89  Aligned_cols=28  Identities=43%  Similarity=0.552  Sum_probs=26.2

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      ++|++++|+|+||||||||++.|++.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            6799999999999999999999999873

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.54  E-value=5.9e-07  Score=75.98  Aligned_cols=102  Identities=18%  Similarity=0.172  Sum_probs=59.8

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceee
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIA  107 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (190)
                      .++.++.|.||+||||||+++++.+.+..+..+.|..-++++....        ...    .      ..+..   ....
T Consensus       120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~--------~~~----~------~~i~q---~evg  178 (343)
T TIGR01420       120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH--------RNK----R------SLINQ---REVG  178 (343)
T ss_pred             hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc--------cCc----c------ceEEc---cccC
Confidence            5688999999999999999999999774444455555444332100        000    0      00000   0000


Q ss_pred             cccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          108 SLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       108 ~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                        .....-...+.+++-.+|+++  ++||+.   |+.......+.+..||
T Consensus       179 --~~~~~~~~~l~~~lr~~pd~i--~vgEir---d~~~~~~~l~aa~tGh  221 (343)
T TIGR01420       179 --LDTLSFANALRAALREDPDVI--LIGEMR---DLETVELALTAAETGH  221 (343)
T ss_pred             --CCCcCHHHHHHHhhccCCCEE--EEeCCC---CHHHHHHHHHHHHcCC
Confidence              001112345788888999999  999996   3334444455555555

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.54  E-value=1.1e-07  Score=60.54  Aligned_cols=35  Identities=40%  Similarity=0.513  Sum_probs=28.3

Q ss_pred             cccccccCC-ccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           21 ERQKLLNQK-GCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        21 ~~~sl~i~~-Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      ++..+++.+ |.++.|+|+|||||||++.+|.=.+.
T Consensus        13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence            334566664 56999999999999999999987773

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.52  E-value=7e-07  Score=66.10  Aligned_cols=34  Identities=29%  Similarity=0.533  Sum_probs=25.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD   65 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~   65 (190)
                      ++.|.|+||+||||++..+++.....+...++++
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~   34 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD   34 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence            4689999999999999999998744333333443

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.49  E-value=1.1e-07  Score=84.01  Aligned_cols=62  Identities=16%  Similarity=0.119  Sum_probs=54.7

Q ss_pred             CcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613            8 TNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus         8 ~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      .|+++.++...+++++++.+..|+.++|+|+||||||||++.|.|++ ++.+|...++...+.
T Consensus       188 ~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gll-pp~~g~e~le~~~i~  249 (506)
T PRK09862        188 HDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLL-PDLSNEEALESAAIL  249 (506)
T ss_pred             cCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccC-CCCCCcEEEecchhh
Confidence            57888888888999999999999999999999999999999999988 677787777766554

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.47  E-value=2.3e-06  Score=68.38  Aligned_cols=116  Identities=17%  Similarity=0.246  Sum_probs=62.0

Q ss_pred             ccccccc-ccccCCccEEEEECCCCCcHHHHHHHHH-HHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHH-H
Q 029613           17 IGRLERQ-KLLNQKGCVVWITGLSGSGKSTLAFSVN-KELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVG-E   93 (190)
Q Consensus        17 ~~~l~~~-sl~i~~Geii~L~G~nGsGKSTLlr~l~-g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~-~   93 (190)
                      ..-|+.+ .=-+++|.++.|.|++||||||++..++ +.+ ..+...+++.-+.-           +++..++...+. .
T Consensus        11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~-~~g~~~~y~~~e~~-----------~~~~~~~~~~~g~~   78 (234)
T PRK06067         11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL-KQGKKVYVITTENT-----------SKSYLKQMESVKID   78 (234)
T ss_pred             CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH-hCCCEEEEEEcCCC-----------HHHHHHHHHHCCCC
Confidence            3444443 2357899999999999999999999884 333 34444455543221           111111111111 0


Q ss_pred             HHHHHHHcCccee-------ecccCccHHHH-HHHHHhCC--CCCeEEEEeeCCchhhhhcChH
Q 029613           94 VAKLFADAGLICI-------ASLISPYRKDR-DACRAMLP--DSNFIEVFMNMPLELCEARDPK  147 (190)
Q Consensus        94 ~~~~~~~~~~~~~-------~~~lS~g~kqr-~iarall~--~~~il~vllDEP~~~ld~~~~~  147 (190)
                      +...+. .+...+       ....+.+..+. ..+...+.  +++++  ++|||++.++..+..
T Consensus        79 ~~~~~~-~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~i--viDs~t~~~~~~~~~  139 (234)
T PRK06067         79 ISDFFL-WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVI--IIDSLTIFATYAEED  139 (234)
T ss_pred             hhHHHh-CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEE--EEecHHHHHhcCCHH
Confidence            011110 111111       11223444555 45556665  77888  999999876654444

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.45  E-value=7.1e-07  Score=78.92  Aligned_cols=55  Identities=25%  Similarity=0.298  Sum_probs=43.7

Q ss_pred             ceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           10 IFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        10 l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      +...+|+...++|+.+.. +|.+++|.|||||||||+++.|+..+     |..+++...+.
T Consensus       265 ~A~~~g~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l-----~~~~~d~g~~Y  319 (512)
T PRK13477        265 IAVRCGSTRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKL-----GLLYLDTGAMY  319 (512)
T ss_pred             EEEEeCCeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHc-----CCeEecCCcee
Confidence            344568888899999988 88999999999999999999999876     23455544443

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=98.44  E-value=7.5e-06  Score=66.06  Aligned_cols=39  Identities=36%  Similarity=0.507  Sum_probs=30.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      ++.|+|++||||||+++.|+..+...+...+.++++.+.
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr   39 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR   39 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH
Confidence            478999999999999999998875444455666665554

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=98.42  E-value=1.2e-07  Score=81.00  Aligned_cols=141  Identities=21%  Similarity=0.255  Sum_probs=73.8

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHH-HHHHHHHHHHHHHcCccee
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTEN-IRRVGEVAKLFADAGLICI  106 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  106 (190)
                      ..|.++||+|+||||||||+..|.+.+....+.. .+..  ..+    ...+..+....+ +++.+....++...+...+
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~~~V~-~ik~--~~~----~~~~d~~~~d~~~~~~aga~~~~~~~~~~~~~   75 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLSERFSVG-YYKH--GCH----RFDIDREGKDSDLARKAGASTVMISDPEKHAL   75 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHhhCceEE-EEEe--CCC----CCCCCcccchHHHHHhccCcEEEEecCCEEEE
Confidence            4689999999999999999999999884322211 2211  111    112222222111 1111111111111122222


Q ss_pred             ecccCccHHHHHHHHHhCCCCCeE--EEEeeCCch--hhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEe
Q 029613          107 ASLISPYRKDRDACRAMLPDSNFI--EVFMNMPLE--LCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKK  180 (190)
Q Consensus       107 ~~~lS~g~kqr~iarall~~~~il--~vllDEP~~--~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~  180 (190)
                      ....+.   .+...+..+.+.+++  |.+-++|..  .|-.++.+.+ ..+..++.+++.++.+. |++|..|+..++
T Consensus        76 ~~~~~~---~~~~~~~~~~~~D~vlvEG~k~~~~pki~~~~~~~~~~-~~~~~~~~~~v~av~~~-~~~~~~~~~~~p  148 (369)
T PRK14490         76 IAGGPP---DPLLERGAFLDCDLLLVEGLKELPLPKILLVDRERKIL-DLLEQGSVTNVVALVVP-DDPASYPDFGLP  148 (369)
T ss_pred             EEeCCC---ChHHHHhccCCCCEEEECCCCCCCCCeEEEEeCCCCcc-cccccCCCCCEEEEEEC-CcccccccCCCc
Confidence            222222   234455555566754  446688776  5554554433 45556678888999888 877755555444

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.42  E-value=1.6e-07  Score=81.42  Aligned_cols=61  Identities=21%  Similarity=0.115  Sum_probs=50.3

Q ss_pred             cccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613            5 GNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus         5 l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      ++.+.++..+ .+..+++++ +.+.+|+.++|+|+||+|||||+++|++.. .++.+.+.+.|.
T Consensus       130 ~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~-~~d~~vi~~iGe  191 (433)
T PRK07594        130 MVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAP-DADSNVLVLIGE  191 (433)
T ss_pred             eeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCC-CCCEEEEEEECC
Confidence            4556666666 468899999 999999999999999999999999999966 566676666554

>PLN02796 D-glycerate 3-kinase

Probab=98.42  E-value=1.9e-07  Score=78.53  Aligned_cols=53  Identities=21%  Similarity=0.195  Sum_probs=41.2

Q ss_pred             cccccccccc---CCccE-----EEEECCCCCcHHHHHHHHHHHHhhC--CCcEEEEcCcccc
Q 029613           18 GRLERQKLLN---QKGCV-----VWITGLSGSGKSTLAFSVNKELYSR--GKLSYILDGDNLR   70 (190)
Q Consensus        18 ~~l~~~sl~i---~~Gei-----i~L~G~nGsGKSTLlr~l~g~l~~~--~~g~i~~~g~~~~   70 (190)
                      .+++++++.+   ++|+.     ++|.|++|||||||++.|.+.+...  ..+.+.+|+..+.
T Consensus        80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt  142 (347)
T PLN02796         80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT  142 (347)
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence            4678888887   45554     9999999999999999999988432  2567788876553

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.42  E-value=2.8e-07  Score=73.56  Aligned_cols=35  Identities=34%  Similarity=0.300  Sum_probs=28.9

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcE
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLS   61 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~   61 (190)
                      .-.+..+++|.|+||||||||++.|++.+. +..|.
T Consensus        29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~-~~~g~   63 (229)
T PRK09270         29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQ-QDGEL   63 (229)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhh-hccCC
Confidence            345678999999999999999999999884 44444

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.39  E-value=3.1e-07  Score=71.72  Aligned_cols=27  Identities=33%  Similarity=0.530  Sum_probs=25.5

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++|++++|+||||||||||+++|++.+
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            589999999999999999999999976

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.38  E-value=2.7e-07  Score=80.22  Aligned_cols=50  Identities=30%  Similarity=0.225  Sum_probs=44.1

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      +..+++++ +.+.+|++++|+|+||+|||||+++|++.. .++.|.+.+.|+
T Consensus       145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~-~~~~gvI~~~Ge  194 (438)
T PRK07721        145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT-SADLNVIALIGE  194 (438)
T ss_pred             chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc-CCCeEEEEEEec
Confidence            46789999 999999999999999999999999999976 677888887543

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.37  E-value=1.7e-06  Score=63.30  Aligned_cols=108  Identities=22%  Similarity=0.293  Sum_probs=54.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccccccc----CCChhhHHHHHHHHHHHHHHHHHcCcceee
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNL----GFSAEDRTENIRRVGEVAKLFADAGLICIA  107 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (190)
                      ++.++|++||||||+++.+...+   +  ...++.+.+...+...-    ....+........+..........+...++
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~---~--~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv   75 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRL---G--AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVV   75 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHS---T--EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHC---C--CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence            57899999999999999998754   2  55677666554322111    111111111122222333223344544444


Q ss_pred             cccCccHHHHHHHHHhCC--CCCeEEEEeeCCchhhhhc
Q 029613          108 SLISPYRKDRDACRAMLP--DSNFIEVFMNMPLELCEAR  144 (190)
Q Consensus       108 ~~lS~g~kqr~iarall~--~~~il~vllDEP~~~ld~~  144 (190)
                      .......++|...+.++.  ..++..|+|+.|...+-.|
T Consensus        76 d~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R  114 (143)
T PF13671_consen   76 DNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRER  114 (143)
T ss_dssp             ESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHH
T ss_pred             ccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHH
Confidence            433333345533333332  2234445888887776433

...

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.36  E-value=2.7e-07  Score=79.98  Aligned_cols=41  Identities=24%  Similarity=0.184  Sum_probs=37.1

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG   58 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~   58 (190)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|++.. .++
T Consensus       142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~-~~d  182 (434)
T PRK07196        142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYT-QAD  182 (434)
T ss_pred             ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhccc-CCC
Confidence            46789999 999999999999999999999999999966 444

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.35  E-value=6.1e-07  Score=74.15  Aligned_cols=36  Identities=22%  Similarity=0.119  Sum_probs=28.8

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEE
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYI   63 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~   63 (190)
                      +...++||.|+|||||||++++|.+++.. +++|.+.
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~   96 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVE   96 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceE
Confidence            45689999999999999999999998842 4455443

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.34  E-value=4.5e-06  Score=73.35  Aligned_cols=36  Identities=25%  Similarity=0.363  Sum_probs=32.0

Q ss_pred             cccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++++.++.+.+|.+++|+||||+||||++..|++.+
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~  280 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARC  280 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHH
Confidence            455667778889999999999999999999999977

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.33  E-value=6.5e-07  Score=84.16  Aligned_cols=53  Identities=15%  Similarity=0.075  Sum_probs=46.2

Q ss_pred             eecccCccHHHH-HHHHHhCCCC--CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          106 IASLISPYRKDR-DACRAMLPDS--NFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       106 ~~~~lS~g~kqr-~iarall~~~--~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      .+..||+||+|| .+|++++.+|  .++  +|||||++||+.+...+.+.+++.+..|
T Consensus       484 ~~~tLSGGE~QRv~LA~aL~~~~~~~ll--ILDEPtagLD~~~~~~L~~~L~~L~~~G  539 (924)
T TIGR00630       484 AAGTLSGGEAQRIRLATQIGSGLTGVLY--VLDEPSIGLHQRDNERLINTLKRLRDLG  539 (924)
T ss_pred             CcCcCCHHHHHHHHHHHHHhhCCCCcEE--EEcCCccCCCHHHHHHHHHHHHHHHhCC
Confidence            367899999999 6999999986  788  9999999999999999999988754444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00767 rho transcription termination factor Rho

Probab=98.33  E-value=7.1e-07  Score=76.46  Aligned_cols=52  Identities=19%  Similarity=-0.015  Sum_probs=46.3

Q ss_pred             ccccCcceeccCc-ccccc-----------ccccccCCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613            4 VGNSTNIFWQESP-IGRLE-----------RQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus         4 ~l~~~~l~~~~~~-~~~l~-----------~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      -+.++|+++.|.+ ..+|+           |+.+.+.+|+.++|+||+|||||||++.|+..+.
T Consensus       130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence            3678999999965 46786           9999999999999999999999999999998773

Members of this family differ in the specificity of RNA binding.

>PRK08149 ATP synthase SpaL; Validated

Probab=98.33  E-value=3.9e-07  Score=78.84  Aligned_cols=54  Identities=15%  Similarity=0.079  Sum_probs=43.9

Q ss_pred             CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCC---cEEEEcCcccc
Q 029613           15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGK---LSYILDGDNLR   70 (190)
Q Consensus        15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~---g~i~~~g~~~~   70 (190)
                      .+..+++++ +.+.+|+.++|+|+||+|||||+++|++.. .++.   |.|-.+++++.
T Consensus       137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~-~~dv~v~g~Ig~rg~ev~  193 (428)
T PRK08149        137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHS-EADVFVIGLIGERGREVT  193 (428)
T ss_pred             CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCC-CCCeEEEEEEeeCCccHH
Confidence            456789999 999999999999999999999999999855 4443   45556666653

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.32  E-value=4.3e-07  Score=76.09  Aligned_cols=50  Identities=26%  Similarity=0.185  Sum_probs=42.2

Q ss_pred             CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613           15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG   66 (190)
Q Consensus        15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g   66 (190)
                      .+..+++.+ +.+.+|+.++|+|+||+|||||+++|++.. .++.+.+..-|
T Consensus        55 tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~~~~~vi~~iG  104 (326)
T cd01136          55 TGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGT-TADVNVIALIG  104 (326)
T ss_pred             CCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCC-CCCEEEEEEEe
Confidence            357789999 999999999999999999999999999976 56666555533

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.31  E-value=6.9e-07  Score=84.12  Aligned_cols=52  Identities=15%  Similarity=0.078  Sum_probs=46.1

Q ss_pred             ecccCccHHHH-HHHHHhCCCC--CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          107 ASLISPYRKDR-DACRAMLPDS--NFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       107 ~~~lS~g~kqr-~iarall~~~--~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      +..||+||+|| .+|++++.+|  .++  +|||||++||+.+...+.+.+++.+..|
T Consensus       487 ~~~LSgGE~QRv~LA~aL~~~~~~~ll--ILDEPtagLd~~~~~~L~~~L~~L~~~G  541 (943)
T PRK00349        487 AGTLSGGEAQRIRLATQIGSGLTGVLY--VLDEPSIGLHQRDNDRLIETLKHLRDLG  541 (943)
T ss_pred             hhhCCHHHHHHHHHHHHHhhCCCCcEE--EecCCccCCCHHHHHHHHHHHHHHHhCC
Confidence            67799999999 6999999987  888  9999999999999999999988754444

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.29  E-value=8.2e-06  Score=69.63  Aligned_cols=38  Identities=24%  Similarity=0.369  Sum_probs=33.6

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..++++.++.+.+|.+++|+||||+||||++..|++.+
T Consensus       124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34567778889999999999999999999999999865

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.29  E-value=9.5e-07  Score=70.25  Aligned_cols=24  Identities=33%  Similarity=0.315  Sum_probs=22.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      ++||.|+|||||||+++.|.+.+.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~   24 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLS   24 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHh
Confidence            589999999999999999999884

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.27  E-value=7.8e-07  Score=77.31  Aligned_cols=51  Identities=20%  Similarity=0.124  Sum_probs=44.1

Q ss_pred             CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613           15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus        15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      .+..+++++ +.+.+|++++|+|+||+|||||+++|++.. .++.+.+.+.|+
T Consensus       149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~-~~d~~vi~~iGe  199 (441)
T PRK09099        149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGT-QCDVNVIALIGE  199 (441)
T ss_pred             CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCC-CCCeEEEEEEcc
Confidence            456789999 999999999999999999999999999966 566777776664

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.26  E-value=1e-05  Score=74.43  Aligned_cols=36  Identities=25%  Similarity=0.341  Sum_probs=32.5

Q ss_pred             cccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++++.++.+.+|++++++||||+||||++..|++.+
T Consensus       174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~  209 (767)
T PRK14723        174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARC  209 (767)
T ss_pred             hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhH
Confidence            466778888889999999999999999999999977

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=98.26  E-value=9.1e-06  Score=67.09  Aligned_cols=37  Identities=30%  Similarity=0.414  Sum_probs=29.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH   71 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~   71 (190)
                      .++.++|++||||||+++.|+..+ +   +.++++.+.+..
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~-~---~~~~l~~D~~r~   39 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKN-P---KAVNVNRDDLRQ   39 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHC-C---CCEEEeccHHHH
Confidence            578899999999999999998865 2   456777766643

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.25  E-value=1.7e-06  Score=67.84  Aligned_cols=27  Identities=44%  Similarity=0.608  Sum_probs=25.3

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .++.+++|.|+||||||||++.|++.+
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            478899999999999999999999987

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.24  E-value=9.2e-07  Score=76.71  Aligned_cols=48  Identities=23%  Similarity=0.132  Sum_probs=42.1

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD   65 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~   65 (190)
                      +..+++++ +.+.+|+.++|+|+||+|||||+++|++.. .++.+.+.+.
T Consensus       132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~-~~~~~vi~~i  179 (422)
T TIGR02546       132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGA-SADVNVIALI  179 (422)
T ss_pred             Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCC-CCCEEEEEEE
Confidence            56789999 999999999999999999999999999966 6666766653

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.22  E-value=2.4e-05  Score=64.14  Aligned_cols=37  Identities=19%  Similarity=0.134  Sum_probs=31.6

Q ss_pred             cccccccccC-------CccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           19 RLERQKLLNQ-------KGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        19 ~l~~~sl~i~-------~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      +++++++.+.       +|++++++|+||+||||+++.|++.+.
T Consensus        57 v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~  100 (270)
T PRK06731         57 ILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFH  100 (270)
T ss_pred             HhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4677777775       458999999999999999999999874

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.22  E-value=9.6e-06  Score=70.22  Aligned_cols=28  Identities=25%  Similarity=0.341  Sum_probs=25.6

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +.+|++++|+||||+||||+++.|++..
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~  215 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAARA  215 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999999864

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.22  E-value=1.1e-06  Score=67.20  Aligned_cols=25  Identities=36%  Similarity=0.591  Sum_probs=23.3

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      |++++|+|||||||||+++.|++.+
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~   25 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARL   25 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            5789999999999999999999976

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.21  E-value=1.2e-06  Score=76.21  Aligned_cols=50  Identities=20%  Similarity=0.150  Sum_probs=41.1

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG   66 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g   66 (190)
                      +..+++++ |.+.+|+.++|+|+||+|||||+++|++.....+.+.+.+.|
T Consensus       151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG  200 (442)
T PRK06315        151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG  200 (442)
T ss_pred             eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence            45678888 999999999999999999999999999976333446666644

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.19  E-value=2.7e-06  Score=70.68  Aligned_cols=43  Identities=37%  Similarity=0.369  Sum_probs=37.9

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCC
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGK   59 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~   59 (190)
                      ..+++++++...++.+++|+|++|||||||+..+.+.+...+.
T Consensus        21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~   63 (300)
T TIGR00750        21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGL   63 (300)
T ss_pred             HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence            4578999999999999999999999999999999997754443

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.19  E-value=1.3e-06  Score=76.07  Aligned_cols=48  Identities=25%  Similarity=0.151  Sum_probs=40.8

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD   65 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~   65 (190)
                      +..+++.+ +.+.+|+.++|+|+||+|||||+++|++.. .++.+.+..-
T Consensus       150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~-~~~~~vi~~i  197 (440)
T TIGR01026       150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNT-EADVNVIALI  197 (440)
T ss_pred             eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCC-CCCEEEEEEE
Confidence            46789999 999999999999999999999999999976 5555555443

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.18  E-value=4.4e-05  Score=65.24  Aligned_cols=46  Identities=15%  Similarity=0.247  Sum_probs=34.9

Q ss_pred             ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      ++.+.+|++++|+||+||||||++..|+..+...+.-..+++.+..
T Consensus       200 ~~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty  245 (407)
T PRK12726        200 SFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF  245 (407)
T ss_pred             CceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence            5677899999999999999999999999876444433345555443

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.17  E-value=6.8e-06  Score=59.14  Aligned_cols=27  Identities=33%  Similarity=0.519  Sum_probs=24.5

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      .+..+.|+|++|+||||+++.++..+.
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            478899999999999999999999774

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=98.17  E-value=1.6e-06  Score=74.88  Aligned_cols=52  Identities=29%  Similarity=0.208  Sum_probs=44.4

Q ss_pred             CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613           15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus        15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      .+..+++++ +.+.+|+.++|+|+||+|||||+++|++.. +++.+.+.+.|+.
T Consensus       123 tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~-~~~~gvi~~~Ger  174 (413)
T TIGR03497       123 TGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNA-KADINVIALIGER  174 (413)
T ss_pred             ccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCeEEEEEEccc
Confidence            456789999 999999999999999999999999999966 6667777666643

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.17  E-value=1.5e-06  Score=75.13  Aligned_cols=50  Identities=24%  Similarity=0.204  Sum_probs=42.0

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      +..+++ .+|.+.+|+.++|+|+||+|||||+++|++.. .+..+.+.+.|+
T Consensus       127 Gi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~-~~~~gvi~~iGe  176 (418)
T TIGR03498       127 GVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNT-DADVVVIALVGE  176 (418)
T ss_pred             ccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCC-CCCEEEEEEEee
Confidence            455665 69999999999999999999999999999976 667777766654

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
3uie_A	200	Crystal Structure Of Adenosine 5'-Phosphosulfate Ki		2e-69
1x6v_B	630	The Crystal Structure Of Human 3'-Phosphoadenosine-		9e-47
2ofx_A	207	Crystal Structure Of The Apsk Domain Of Human Papss		4e-46
2ofw_A	208	Crystal Structure Of The Apsk Domain Of Human Papss		9e-46
1d6j_A	211	Crystal Structure Of Adenosine 5'-Phosphosulfate (A		1e-44
2ax4_A	198	Crystal Structure Of The Kinase Domain Of Human 3'-		3e-44
2pey_A	179	Crystal Strucutre Of Deletion Mutant Of Aps-Kinase		3e-44
3cr7_A	197	Crystal Structure Of N-Terminal Truncation Of Aps K		2e-39
2gks_A	546	Crystal Structure Of The Bi-Functional Atp Sulfuryl		4e-30
2yvu_A	186	Crystal Structure Of Ape1195 Length = 186		1e-23
3cr8_A	552	Hexameric Aps Kinase From Thiobacillus Denitrifican		5e-23
1m8p_A	573	Crystal Structure Of P. Chrysogenum Atp Sulfurylase		8e-15
1i2d_A	573	Crystal Structure Of Atp Sulfurylase From Penicilli		8e-15

>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase From Arabidopsis Thaliana In Complex With Amppnp And Aps Length = 200

Iteration: 1
 Score =  257 bits (657), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 117/159 (73%), Positives = 141/159 (88%)
Query: 6   NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD 65
           NSTNI W E  + +++RQ+LL+QKGCV+W+TGLSGSGKSTLA ++N+ LY +GKL YILD
Sbjct: 1   NSTNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60
Query: 66  GDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLP 125
           GDN+RHGLN++L F AEDR ENIRRVGEVAKLFADAG+ICIASLISPYR DRDACR++LP
Sbjct: 61  GDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLP 120
Query: 126 DSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
           + +F+EVFM++PL +CEARDPKGLYKLARAGKIKG   I
Sbjct: 121 EGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGI 159

>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'- Phosphosulfate Synthetase 1 Length = 630

Iteration: 1
 Score =  182 bits (462), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 93/175 (53%), Positives = 120/175 (68%), Gaps = 14/175 (8%)
Query: 7   STNIFWQESPIGRLERQKLLNQKG----CVVWITGLSGSGKSTLAFSVNKELYSRGKLSY 62
           +TN+ +Q   + R +R +++  +G    C VW+TGLSG+GK+T++ ++ + L   G   Y
Sbjct: 25  ATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 84
Query: 63  ILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACR- 121
            LDGDN+R GLNKNLGFS EDR EN+RR+ EVAKLFADAGL+CI S ISPY +DR+  R 
Sbjct: 85  TLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQ 144
Query: 122 ----AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEK 172
               A LP   F EVF++ PL +CE RD KGLYK ARAG+IKG   I S   YEK
Sbjct: 145 IHEGASLP---FFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDS--EYEK 194

>pdb|2OFX|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 In Complex With Adpmg And Paps Length = 207

Iteration: 1
 Score =  180 bits (457), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 120/175 (68%), Gaps = 14/175 (8%)
Query: 7   STNIFWQESPIGRLERQKLLNQKG----CVVWITGLSGSGKSTLAFSVNKELYSRGKLSY 62
           +TN+ +Q   + R +R +++  +G    C VW+TGLSG+GK+T++ ++ + L   G   Y
Sbjct: 5   ATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 64
Query: 63  ILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACR- 121
            LDGDN+R GLNKNLGFS EDR EN+RR+ EVAKLFADAGL+CI S ISPY +DR+  R 
Sbjct: 65  TLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQ 124
Query: 122 ----AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEK 172
               A LP   F EVF++ PL +CE RD KGLYK ARAG+IKG   I S   YEK
Sbjct: 125 IHEGASLP---FFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDS--EYEK 174

>pdb|2OFW|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 Complexed With 2 Aps Molecules Length = 208

Iteration: 1
 Score =  179 bits (454), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 92/175 (52%), Positives = 120/175 (68%), Gaps = 14/175 (8%)
Query: 7   STNIFWQESPIGRLERQKLLNQKG----CVVWITGLSGSGKSTLAFSVNKELYSRGKLSY 62
           +TN+ +Q   + R +R +++  +G    C +W+TGLSG+GK+T++ ++ + L   G   Y
Sbjct: 6   ATNVTYQAHHVSRNKRGQVVGTRGGFRGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPCY 65
Query: 63  ILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACR- 121
            LDGDN+R GLNKNLGFS EDR EN+RR+ EVAKLFADAGL+CI S ISPY +DR+  R 
Sbjct: 66  TLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQ 125
Query: 122 ----AMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEK 172
               A LP   F EVF++ PL +CE RD KGLYK ARAG+IKG   I S   YEK
Sbjct: 126 IHEGASLP---FFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDS--EYEK 175

>pdb|1D6J|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps) Kinase From Penicillium Chrysogenum Length = 211

Iteration: 1
 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/170 (53%), Positives = 112/170 (65%), Gaps = 15/170 (8%)
Query: 7   STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILD 65
           STNI +  S + R ER +L NQ+G  +W+TGLS SGKSTLA  +  +L   R   +Y LD
Sbjct: 2   STNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61
Query: 66  GDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAM-- 123
           GDN+R GLNK+LGFS  DR ENIRR+ EVAKLFAD+  I I S ISPYRKDRD  R +  
Sbjct: 62  GDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHE 121
Query: 124 ---------LPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
                    LP   F+EV++++P+E+ E RDPKGLYK AR G IK    I
Sbjct: 122 VATPGEETGLP---FVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGI 168

>pdb|2AX4|A Chain A, Crystal Structure Of The Kinase Domain Of Human 3'- Phosphoadenosine 5'-Phosphosulphate Synthetase 2 Length = 198

Iteration: 1
 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 87/154 (56%), Positives = 112/154 (72%), Gaps = 6/154 (3%)
Query: 29  KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENI 88
           +GC VW+TGLSG+GK+T++F++ + L S     Y LDGDN+RHGLN+NLGFS  DR ENI
Sbjct: 21  RGCTVWLTGLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENI 80
Query: 89  RRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSN--FIEVFMNMPLELCEARDP 146
           RR+ EVAKLFADAGL+CI S ISP+ KDR+  R +   +   F E+F++ PL +CE+RD 
Sbjct: 81  RRIAEVAKLFADAGLVCITSFISPFAKDRENARKIHESAGLPFFEIFVDAPLNICESRDV 140
Query: 147 KGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKK 180
           KGLYK ARAG+IKG   I S   YEK  P T ++
Sbjct: 141 KGLYKRARAGEIKGFTGIDS--DYEK--PETPER 170

>pdb|2PEY|A Chain A, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain Of Human Paps-Synthetase 1 Length = 179

Iteration: 1
 Score =  174 bits (440), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/151 (58%), Positives = 108/151 (71%), Gaps = 10/151 (6%)
Query: 27  NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTE 86
           + +GC VW+TGLSG+GK+T++ ++ + L   G   Y LDGDN+R GLNKNLGFS EDR E
Sbjct: 2   HMRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREE 61
Query: 87  NIRRVGEVAKLFADAGLICIASLISPYRKDRDACR-----AMLPDSNFIEVFMNMPLELC 141
           N+RR+ EVAKLFADAGL+CI S ISPY +DR+  R     A LP   F EVF++ PL +C
Sbjct: 62  NVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLP---FFEVFVDAPLHVC 118
Query: 142 EARDPKGLYKLARAGKIKGLLSIFSFCYYEK 172
           E RD KGLYK ARAG+IKG   I S   YEK
Sbjct: 119 EQRDVKGLYKKARAGEIKGFTGIDS--EYEK 147

>pdb|3CR7|A Chain A, Crystal Structure Of N-Terminal Truncation Of Aps Kinase From Penicillium Chrysogenum: Ternary Structure With Adp And Paps Length = 197

Iteration: 1
 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 99/149 (66%), Gaps = 15/149 (10%)
Query: 28  QKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILDGDNLRHGLNKNLGFSAEDRTE 86
           Q+G  +W+TGLS SGKSTLA  +  +L   R   +Y LDGDN+R GLNK+LGFS  DR E
Sbjct: 1   QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNE 60
Query: 87  NIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAM-----------LPDSNFIEVFMN 135
           NIRR+ EVAKLFAD+  I I S ISPYRKDRD  R +           LP   F+EV+++
Sbjct: 61  NIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLP---FVEVYVD 117
Query: 136 MPLELCEARDPKGLYKLARAGKIKGLLSI 164
           +P+E+ E RDPKGLYK AR G IK    I
Sbjct: 118 VPVEVAEQRDPKGLYKKAREGVIKEFTGI 146

>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps Kinase From Aquifex Aeolicus, A Chemolithotrophic Thermophile Length = 546

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/138 (46%), Positives = 89/138 (64%)
Query: 27  NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTE 86
           +++G  VW+TGL  +GKST+A  +   L +RG+   +LDGD +R  L++ LGFS EDR  
Sbjct: 369 HKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRIT 428
Query: 87  NIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDP 146
           NI RVG VA        + I +L+SPYR  R+  R M+ +  FIEVF++ P+E+CE RD 
Sbjct: 429 NILRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV 488
Query: 147 KGLYKLARAGKIKGLLSI 164
           KGLYK A+ G IKG   +
Sbjct: 489 KGLYKKAKEGLIKGFTGV 506

>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195 Length = 186

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 85/139 (61%), Gaps = 2/139 (1%)
Query: 28  QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTEN 87
           +KG VVW+TGL GSGK+T+A  +   L   G    +LDGD  R  +++  GF+ E+R  +
Sbjct: 11  EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRH 70
Query: 88  IRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSN--FIEVFMNMPLELCEARD 145
           ++R+  +A+L A  G+I I S +SPY++ R+  R ++ +    F+E+++   LE    RD
Sbjct: 71  LKRIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRD 130
Query: 146 PKGLYKLARAGKIKGLLSI 164
           PKGLYK A  G+++    I
Sbjct: 131 PKGLYKKALKGELENFTGI 149

>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans Length = 552

Iteration: 1
 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/179 (39%), Positives = 95/179 (53%), Gaps = 9/179 (5%)
Query: 12  WQESP--IGRLERQKLLNQK-GCVVWITGLSGSGKSTLAFSVNKELYSRG-KLSYILDGD 67
           W   P  +  L RQ    ++ G  V+ TGLSG+GKSTLA ++   L   G +   +LDGD
Sbjct: 348 WYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407
Query: 68  NLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPD- 126
            +R  L+  LGFS   R  N+RR+G VA        I I + I+PYR+ R   RAM+   
Sbjct: 408 IVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAICAPIAPYRQTRRDVRAMIEAV 467
Query: 127 SNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKISAT 185
             F+E+ +  P+E CE+RD KGLY  ARAG I     +     YE  +P T +  I  T
Sbjct: 468 GGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSD--PYE--VPETPELAIDTT 522

>pdb|1M8P|A Chain A, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The T-State Length = 573

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 29  KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSY-ILDGDNLRHGLNKNLGFSAEDRTEN 87
           +G  +++TG   SGK  +A ++   L  +G  S  +L GD +RH L+  LGF+ EDR  N
Sbjct: 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTN 454
Query: 88  IRRVGEVAKLFADAGLICIASLISPYRKDRDACR-AMLPDSNFIEVFMNMPLELCEARDP 146
           I+R+  VA     AG   IA+ I+PY + R   R A+    +F  V +  PLE CE  D 
Sbjct: 455 IQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 514
Query: 147 KGLYKLARAGKIKGLLSI 164
           +G+Y  AR G+IKG   +
Sbjct: 515 RGIYAAARRGEIKGFTGV 532

>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium Chrysogenum Length = 573

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 29  KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSY-ILDGDNLRHGLNKNLGFSAEDRTEN 87
           +G  +++TG   SGK  +A ++   L  +G  S  +L GD +RH L+  LGF+ EDR  N
Sbjct: 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTN 454
Query: 88  IRRVGEVAKLFADAGLICIASLISPYRKDRDACR-AMLPDSNFIEVFMNMPLELCEARDP 146
           I+R+  VA     AG   IA+ I+PY + R   R A+    +F  V +  PLE CE  D 
Sbjct: 455 IQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 514
Query: 147 KGLYKLARAGKIKGLLSI 164
           +G+Y  AR G+IKG   +
Sbjct: 515 RGIYAAARRGEIKGFTGV 532

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	1e-107
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	1e-100
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	4e-95
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	5e-93
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	6e-85
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	3e-69
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	2e-66
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	3e-60
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	5e-25
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	1e-16
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	4e-16
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	3e-15
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	6e-15
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	7e-15
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	9e-15
2vli_A	183	Antibiotic resistance protein; transferase, tunica	5e-12
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	3e-08
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	8e-08
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	4e-05
1b0u_A	262	Histidine permease; ABC transporter, transport pro	4e-05
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	9e-05
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	1e-04
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	5e-04
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	7e-04
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	8e-04

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} PDB: 4fxp_A* Length = 200

 Score =  303 bits (779), Expect = e-107
 Identities = 116/155 (74%), Positives = 140/155 (90%)

Query: 6   NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD 65
           NSTNI W E  + +++RQ+LL+QKGCV+W+TGLSGSGKSTLA ++N+ LY +GKL YILD
Sbjct: 1   NSTNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60

Query: 66  GDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLP 125
           GDN+RHGLN++L F AEDR ENIRRVGEVAKLFADAG+ICIASLISPYR DRDACR++LP
Sbjct: 61  GDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLP 120

Query: 126 DSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160
           + +F+EVFM++PL +CEARDPKGLYKLARAGKIKG
Sbjct: 121 EGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKG 155

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Length = 211

 Score =  288 bits (739), Expect = e-100
 Identities = 88/163 (53%), Positives = 110/163 (67%), Gaps = 9/163 (5%)

Query: 7   STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILD 65
           STNI +  S + R ER +L NQ+G  +W+TGLS SGKSTLA  +  +L   R   +Y LD
Sbjct: 2   STNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61

Query: 66  GDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLP 125
           GDN+R GLNK+LGFS  DR ENIRR+ EVAKLFAD+  I I S ISPYRKDRD  R +  
Sbjct: 62  GDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHE 121

Query: 126 DSN--------FIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160
            +         F+EV++++P+E+ E RDPKGLYK AR G IK 
Sbjct: 122 VATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKE 164

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Length = 186

 Score =  273 bits (700), Expect = 4e-95
 Identities = 52/142 (36%), Positives = 84/142 (59%), Gaps = 2/142 (1%)

Query: 21  ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFS 80
                  +KG VVW+TGL GSGK+T+A  +   L   G    +LDGD  R  +++  GF+
Sbjct: 4   LTTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFT 63

Query: 81  AEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSN--FIEVFMNMPL 138
            E+R  +++R+  +A+L A  G+I I S +SPY++ R+  R ++ +    F+E+++   L
Sbjct: 64  REERLRHLKRIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASL 123

Query: 139 ELCEARDPKGLYKLARAGKIKG 160
           E    RDPKGLYK A  G+++ 
Sbjct: 124 EEVIRRDPKGLYKKALKGELEN 145

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Length = 179

 Score =  267 bits (686), Expect = 5e-93
 Identities = 80/137 (58%), Positives = 103/137 (75%), Gaps = 2/137 (1%)

Query: 27  NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTE 86
           + +GC VW+TGLSG+GK+T++ ++ + L   G   Y LDGDN+R GLNKNLGFS EDR E
Sbjct: 2   HMRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREE 61

Query: 87  NIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSN--FIEVFMNMPLELCEAR 144
           N+RR+ EVAKLFADAGL+CI S ISPY +DR+  R +   ++  F EVF++ PL +CE R
Sbjct: 62  NVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQR 121

Query: 145 DPKGLYKLARAGKIKGL 161
           D KGLYK ARAG+IKG 
Sbjct: 122 DVKGLYKKARAGEIKGF 138

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* Length = 630

 Score =  261 bits (669), Expect = 6e-85
 Identities = 85/169 (50%), Positives = 114/169 (67%), Gaps = 10/169 (5%)

Query: 2   ATVG----NSTNIFWQESPIGRLERQKLLNQK----GCVVWITGLSGSGKSTLAFSVNKE 53
                    +TN+ +Q   + R +R +++  +    GC VW+TGLSG+GK+T++ ++ + 
Sbjct: 16  NAQNWGMQRATNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEY 75

Query: 54  LYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPY 113
           L   G   Y LDGDN+R GLNKNLGFS EDR EN+RR+ EVAKLFADAGL+CI S ISPY
Sbjct: 76  LVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPY 135

Query: 114 RKDRDACRAMLPDS--NFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160
            +DR+  R +   +   F EVF++ PL +CE RD KGLYK ARAG+IKG
Sbjct: 136 TQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKG 184

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} Length = 552

 Score =  219 bits (558), Expect = 3e-69
 Identities = 60/157 (38%), Positives = 82/157 (52%), Gaps = 2/157 (1%)

Query: 6   NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSY-IL 64
                 + E       +     ++G  V+ TGLSG+GKSTLA ++   L   G     +L
Sbjct: 345 IPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLL 404

Query: 65  DGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAML 124
           DGD +R  L+  LGFS   R  N+RR+G VA        I I + I+PYR+ R   RAM+
Sbjct: 405 DGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAICAPIAPYRQTRRDVRAMI 464

Query: 125 PDS-NFIEVFMNMPLELCEARDPKGLYKLARAGKIKG 160
                F+E+ +  P+E CE+RD KGLY  ARAG I  
Sbjct: 465 EAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPE 501

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} Length = 546

 Score =  211 bits (539), Expect = 2e-66
 Identities = 66/161 (40%), Positives = 91/161 (56%)

Query: 6   NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD 65
                   E      E     +++G  VW+TGL  +GKST+A  +   L +RG+   +LD
Sbjct: 348 LPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407

Query: 66  GDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLP 125
           GD +R  L++ LGFS EDR  NI RVG VA        + I +L+SPYR  R+  R M+ 
Sbjct: 408 GDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMME 467

Query: 126 DSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFS 166
           +  FIEVF++ P+E+CE RD KGLYK A+ G IKG   +  
Sbjct: 468 EGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDD 508

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* Length = 573

 Score =  195 bits (498), Expect = 3e-60
 Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 2/163 (1%)

Query: 6   NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSY-IL 64
                 + E      E       +G  +++TG   SGK  +A ++   L  +G  S  +L
Sbjct: 372 IPEWFSYPEVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLL 431

Query: 65  DGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAML 124
            GD +RH L+  LGF+ EDR  NI+R+  VA     AG   IA+ I+PY + R   R  +
Sbjct: 432 LGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAV 491

Query: 125 PDSN-FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFS 166
             +  F  V +  PLE CE  D +G+Y  AR G+IKG   +  
Sbjct: 492 SQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDD 534

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 96.9 bits (241), Expect = 5e-25
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 6/119 (5%)

Query: 31  CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRR 90
            ++ +TGL G GKST + ++ K L        +L  D +R     +     E   E I++
Sbjct: 5   MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE----SFPVWKEKYEEFIKK 60

Query: 91  VGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDS--NFIEVFMNMPLELCEARDPK 147
                   A      I    + Y   R     +      N+  +++   L++   R+ +
Sbjct: 61  STYRLIDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIE 119

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 73.0 bits (179), Expect = 1e-16
 Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 12/124 (9%)

Query: 28  QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTEN 87
           Q   ++ +TG   +GK+TL+    + L +  +L   L  D  +  +   LG+S  + +  
Sbjct: 3   QTPALIIVTGHPATGKTTLS----QALATGLRLPL-LSKDAFKEVMFDGLGWSDREWSRR 57

Query: 88  IRRVG-----EVAKLFADAGLICIASLISPYRKDRDACRAMLP--DSNFIEVFMNMPLEL 140
           +           A     +G   I         D +  + +        I++      ++
Sbjct: 58  VGATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDV 117

Query: 141 CEAR 144
              R
Sbjct: 118 LVER 121

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200

 Score = 72.0 bits (176), Expect = 4e-16
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 12/123 (9%)

Query: 27  NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKN-----LGFSA 81
            +    V + G+SGSGK+T+A      +     L +  + D      N       +  + 
Sbjct: 26  GEPTRHVVVMGVSGSGKTTIA----HGVADETGLEFA-EADAFHSPENIATMQRGIPLTD 80

Query: 82  EDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELC 141
           EDR   +R + E     ADAG+  I +  +  R  RD  R   P  +F  + ++ P E+ 
Sbjct: 81  EDRWPWLRSLAEWMDARADAGVSTIITCSALKRTYRDVLREGPPSVDF--LHLDGPAEVI 138

Query: 142 EAR 144
           + R
Sbjct: 139 KGR 141

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 69.0 bits (168), Expect = 3e-15
 Identities = 21/146 (14%), Positives = 46/146 (31%), Gaps = 20/146 (13%)

Query: 29  KGCVVWITGLSGSGKSTLAFSVNKELYSRG----------KLSYILDGDNLRHGLNKNLG 78
              ++ + G S +GKS +   +   L               +   +         + + G
Sbjct: 2   TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61

Query: 79  FSAEDRTENIRRV-GEVAKLFADAG--LICIASLISPYRKDRDACRAMLPDSNFIEVFMN 135
            S       +     E     A AG  +I     +      ++  R+ + D + + V + 
Sbjct: 62  VSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAA-AQERWRSFVGDLDVLWVGVR 120

Query: 136 MPLELCEARDPKGLYKLARAGKIKGL 161
               + E R+       AR  ++ G+
Sbjct: 121 CDGAVAEGRE------TARGDRVAGM 140

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 68.6 bits (167), Expect = 6e-15
 Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 13/124 (10%)

Query: 27  NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI-LDGDNLRHGLNK-----NLGFS 80
           +  G ++ ++G  GSGKST+A    + L +   +  +    D+L   +        L  S
Sbjct: 6   DLGGNILLLSGHPGSGKSTIA----EALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQS 61

Query: 81  AEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLEL 140
            +     ++   +VA  +A  G   I   +        A  A+    ++  + +      
Sbjct: 62  HQQNRMIMQIAADVAGRYAKEGYFVILDGVV-RPDWLPAFTALARPLHY--IVLRTTAAE 118

Query: 141 CEAR 144
              R
Sbjct: 119 AIER 122

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Length = 175

 Score = 68.1 bits (166), Expect = 7e-15
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 12/123 (9%)

Query: 27  NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKN-----LGFSA 81
           N    +  + G+SGSGKS +A        +    +  LDGD L    N          + 
Sbjct: 5   NHDHHIYVLMGVSGSGKSAVA-----SEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLND 59

Query: 82  EDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELC 141
           +DR   ++ + + A        + +    +  +  RD  R   P+     +++    ++ 
Sbjct: 60  DDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPN--LSFIYLKGDFDVI 117

Query: 142 EAR 144
           E+R
Sbjct: 118 ESR 120

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 68.0 bits (166), Expect = 9e-15
 Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 10/121 (8%)

Query: 31  CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTEN--- 87
            +  ITG +G GKST      K L ++   S  ++GD + H +        E        
Sbjct: 3   KLYIITGPAGVGKSTTC----KRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALT 58

Query: 88  IRRVGEVAKLFADAGLICI---ASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEAR 144
            + + ++   F  A    +    +            +A + D     + +    E    R
Sbjct: 59  WKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRR 118

Query: 145 D 145
           D
Sbjct: 119 D 119

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Length = 183

 Score = 60.7 bits (147), Expect = 5e-12
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 32  VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTEN---I 88
           ++WI G  G GK+  A      L+ R   S++ + + +   L K     + D  E+   I
Sbjct: 7   IIWINGPFGVGKTHTA----HTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMWI 62

Query: 89  RRVGEVAKLFADAG---LICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEAR 144
             + +  +  +      LI   S+    R  R          +     +  PL +   R
Sbjct: 63  PLMLDALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLER 121

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202

 Score = 52.8 bits (126), Expect = 4e-09
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 15/118 (12%)

Query: 32  VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKN-----LGFSAEDRTE 86
            + + G+SGSGKS++     + +       +I +GD L    N       +  + +DR  
Sbjct: 20  SIVVMGVSGSGKSSVG----EAIAEACGYPFI-EGDALHPPENIRKMSEGIPLTDDDRWP 74

Query: 87  NIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEAR 144
            +  +GE         + C A      R  RD  R   P      VF++    +   R
Sbjct: 75  WLAAIGERLASREPVVVSCSA----LKRSYRDKLRESAP-GGLAFVFLHGSESVLAER 127

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 6e-09
 Identities = 37/229 (16%), Positives = 74/229 (32%), Gaps = 56/229 (24%)

Query: 6   NSTNIF-----WQESPIGRLERQKLLN-QKGCVVWITGLSGSGKSTLAFSV--NKELYSR 57
           N   +F      +  P  +L RQ LL  +    V I G+ GSGK+ +A  V  + ++  +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179

Query: 58  --GKLSYILDGD------------NLRHGLNKNLGFSAEDRTENIRRVGEVAK-----LF 98
              K+ ++   +             L + ++ N   S  D + NI+      +     L 
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT-SRSDHSSNIKLRIHSIQAELRRLL 238

Query: 99  ADAG-----LI----CIASLISPYRKDRD-ACRAML--PDSNFIEVFMNM-PLELCEARD 145
                    L+      A   + +    + +C+ +L        +         +     
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAF----NLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 146 PKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCK------KKISATTRN 188
              L       ++K LL  +  C  + L              I+ + R+
Sbjct: 295 SMTLTP----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 51.2 bits (122), Expect = 3e-08
 Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 14/126 (11%)

Query: 32  VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGL-----NKNLGFSAEDRTE 86
           ++   G  GSGKST A    +E  ++    Y ++ D+ R  +          ++ +    
Sbjct: 4   IILTIGCPGSGKSTWA----REFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGI 59

Query: 87  NIRRVGEVAKLFADAGLICIASLIS---PYRKDRDACRAMLPDSN--FIEVFMNMPLELC 141
                 + AK     G      +IS      + R A      +          ++P    
Sbjct: 60  VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL 119

Query: 142 EARDPK 147
             R+ K
Sbjct: 120 VKRNSK 125

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 49.0 bits (117), Expect = 8e-08
 Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 14/124 (11%)

Query: 32  VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGL-----NKNLGFSAEDRTE 86
           ++   G  GSGKST A    +E  ++    Y ++ D+ R  +          ++ +    
Sbjct: 4   IILTIGCPGSGKSTWA----REFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGI 59

Query: 87  NIRRVGEVAKLFADAGLICIASLIS---PYRKDRDACRAMLPDSN--FIEVFMNMPLELC 141
                 + AK     G      +IS      + R A      +          ++P    
Sbjct: 60  VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL 119

Query: 142 EARD 145
             R+
Sbjct: 120 VKRN 123

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Length = 173

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 18/117 (15%)

Query: 35  ITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKN----LGFSA---EDRTEN 87
           + G     KST+A  ++KEL    K   I  G +     + N      F+    ED    
Sbjct: 6   LEGPDCCFKSTVAAKLSKEL----KYPII-KGSSFELAKSGNEKLFEHFNKLADEDNVI- 59

Query: 88  IRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEAR 144
           I R      ++A         L       R     +   +    V+++    + + R
Sbjct: 60  IDRFVYSNLVYAKKFKDYSI-LTERQL--RFIEDKIKAKAKV--VYLHADPSVIKKR 111

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 28 QKGCVVWITGLSGSGKSTLAFSVNK-ELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTE 86
          + G V+ I G SGSGKST    +N  E  S G +  I++G N+    +K+      D+ +
Sbjct: 30 RAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI--IVNGQNINLVRDKDGQLKVADKNQ 87

Query: 87 NIRRV 91
           +R +
Sbjct: 88 -LRLL 91

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Length = 842

 Score = 41.3 bits (98), Expect = 9e-05
 Identities = 13/17 (76%), Positives = 15/17 (88%), Gaps = 1/17 (5%)

Query: 32 VVWITGLSGSGKSTLAF 48
          VV  TG+SGSGKS+LAF
Sbjct: 39 VV-FTGVSGSGKSSLAF 54

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Length = 916

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 13/17 (76%), Positives = 15/17 (88%), Gaps = 1/17 (5%)

Query: 32 VVWITGLSGSGKSTLAF 48
          VV ITG+SGSGKS+LA 
Sbjct: 27 VV-ITGVSGSGKSSLAM 42

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} Length = 181

 Score = 37.7 bits (87), Expect = 7e-04
 Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 13/113 (11%)

Query: 30  GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD-------GDNLRHGLNKNLGFSAE 82
              V ITG +  GKS L+      L  RG      D        + L             
Sbjct: 16  KMGVLITGEANIGKSELSL----ALIDRGHQLVCDDVIDLKQENNQLIGSCPSVANGYIL 71

Query: 83  DRTENIRRVGEV--AKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVF 133
                I  V ++       +   + ++  +    K       + P      + 
Sbjct: 72  ITGIGIIDVPKLFGLDAVVNQHEVHLSISLVKPEKMPLLDDPLNPLYRTEIIL 124

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Length = 253

 Score = 38.0 bits (87), Expect = 8e-04
 Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 13/138 (9%)

Query: 17  IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKN 76
           +  L R K  +++   + + G SG+GK+T+     KE         I+DGD+ R      
Sbjct: 19  LRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIV---IIDGDSFRSQHPHY 75

Query: 77  LGFSAEDRTENIRRVGEVAKLFADA----------GLICIASLISPYRKDRDACRAMLPD 126
           L    E   +++    + A    ++           L+   +L +     + A       
Sbjct: 76  LELQQEYGKDSVEYTKDFAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKG 135

Query: 127 SNFIEVFMNMPLELCEAR 144
                  +    EL    
Sbjct: 136 YEVQLALIATKPELSYLS 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.98
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.98
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.98
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.98
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.98
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.98
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.97
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.97
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.97
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.97
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.97
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.97
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.97
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.97
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.97
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.97
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.97
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.97
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.97
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.97
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.97
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.97
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.97
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.96
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.95
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.95
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.95
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.95
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.95
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.94
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.94
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.93
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.93
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.93
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.92
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.92
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.92
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.92
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.92
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.92
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.92
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.91
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.9
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.89
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.88
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.88
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.87
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.85
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.83
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.83
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.82
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.8
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.79
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.78
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.77
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.76
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.76
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.75
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	99.74
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.74
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.71
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.71
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.69
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.69
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.68
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.68
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.68
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.66
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.65
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.63
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.63
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.62
2og2_A	359	Putative signal recognition particle receptor; nuc	99.61
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.6
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.6
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.59
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.58
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.57
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.56
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.56
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.54
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.54
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.51
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.5
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.5
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.49
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.49
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.49
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.48
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.47
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.45
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.44
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.43
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.4
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.39
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.39
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.37
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.37
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.37
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.33
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.32
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.32
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.31
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.31
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.31
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.31
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.31
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.3
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.29
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.29
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.29
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.28
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.27
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.27
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.26
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.24
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.2
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.19
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.19
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.18
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.18
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.17
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.16
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.15
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.12
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.1
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.04
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.03
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.01
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.0
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.96
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.96
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.95
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.94
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.92
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.88
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.87
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.86
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.85
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.83
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.82
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.8
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.79
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	98.79
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.76
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.76
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.76
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.76
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.76
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.76
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.76
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.74
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.73
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.72
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.71
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.71
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.68
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.67
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.66
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.64
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	98.61
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.58
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.58
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.57
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.56
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.55
3kta_B	173	Chromosome segregation protein SMC; structural mai	98.53
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.53
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.53
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.52
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.51
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.49
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.47
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.46
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.44
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.42
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.42
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.41
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.41
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.4
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.39
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.38
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.37
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.37
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.32
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.3
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	98.29
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.29
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.27
3ice_A	422	Transcription termination factor RHO; transcriptio	98.27
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.27
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.24
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.21
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.19
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.19
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.17
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.17
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.17
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.17
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.12
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.11
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	98.08
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.06
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	98.03
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.02
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.02
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.02
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	98.02
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.0
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.99
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.99
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.99
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.97
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.96
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.92
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.91
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.91
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.9
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.89
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.89
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.86
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.85
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.85
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.84
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.83
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.83
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.83
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.82
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.81
1via_A	175	Shikimate kinase; structural genomics, transferase	97.77
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.77
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.74
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.74
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.74
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	97.74
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.74
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.74
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.73
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.73
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.72
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.72
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.72
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.72
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.71
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.71
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	97.71
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.69
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.69
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.65
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.65
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.65
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.65
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.65
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.64
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.64
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.63
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.63
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.62
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.62
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.62
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.62
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.6
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.59
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.58
3bos_A	242	Putative DNA replication factor; P-loop containing	97.57
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.56
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.55
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.54
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.54
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.54
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.53
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.52
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.52
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.49
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.49
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.47
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.47
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.47
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.46
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.43
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.43
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.42
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.42
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.41
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.41
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.4
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.39
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.36
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.35
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.32
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.31
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.29
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.29
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.28
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.27
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.26
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.26
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.25
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.25
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.24
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.24
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.23
2xxa_A	433	Signal recognition particle protein; protein trans	97.2
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.2
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.18
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.18
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.17
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.16
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.13
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.13
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.11
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.09
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	97.08
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.07
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.07
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.07
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.06
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.04
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.03
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	97.02
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.01
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.01
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.0
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.99
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.98
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.98
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.97
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.94
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.94
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.93
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.92
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.92
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.9
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.89
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.88
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.88
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.88
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.87
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.87
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.87
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.87
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.86
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.85
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.85
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.85
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.85
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.84
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.84
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.84
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.83
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.82
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.82
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.82
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.81
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.81
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.81
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.81
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.81
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.8
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.8
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.8
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.8
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.78
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.78
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.78
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.77
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.77
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.76
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.75
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.74
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.74
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.74
2qgz_A	308	Helicase loader, putative primosome component; str	96.73
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.72
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.72
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.72
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.72
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.72
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.72
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.72
3io5_A	333	Recombination and repair protein; storage dimer, i	96.71
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.71
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.71
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.7
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.7
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.7
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.7
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.69
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.69
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.69
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.69
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.69
3pvs_A	447	Replication-associated recombination protein A; ma	96.68
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.67
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.67
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.66
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.65
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.65
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.65
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.64
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.64
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.64
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.64
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.64
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.63
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.63
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.63
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.62
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.62
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.62
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.62
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.61
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.61
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.61
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.6
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.6
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.6
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.59
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.59
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.59
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.59
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.58
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.58
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.57
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.57
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.57
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.56
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.56
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.54
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.54
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.54
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.53
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.53
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.52
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.52
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.52
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.51
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.51
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.51
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.5
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.49
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.49
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.49
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.48
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.48
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.46
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.46
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.45
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.43
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.43
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.42
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.41
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	96.41
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.41
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.4
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.4
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.39
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.38
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.38
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.37
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.36
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.35
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.33
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.33
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.33
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.32
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.31
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.3
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.3
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.3
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.3
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.29
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.29
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.29
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.28
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.27
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.25
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.24
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.24
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.21
3co5_A	143	Putative two-component system transcriptional RES	96.2
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.2
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.2
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.2
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.18
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.17
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.17

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=5.4e-35  Score=231.67  Aligned_cols=153  Identities=24%  Similarity=0.223  Sum_probs=120.9

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------c
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-------L   73 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-------~   73 (190)
                      |.+|++++|++++|++.++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++...       .
T Consensus         1 m~~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~   79 (224)
T 2pcj_A            1 MAEILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD-APTEGKVFLEGKEVDYTNEKELSLL   79 (224)
T ss_dssp             -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS-CCSEEEEEETTEECCSSCHHHHHHH
T ss_pred             CCcEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCCCCHHHHHHH
Confidence            677899999999999888999999999999999999999999999999999977 78899999999876321       1


Q ss_pred             c-cccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613           74 N-KNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        74 ~-~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~  127 (190)
                      + ..++|.+++        ..+++..            ...+..++...++..    .+..||+||+|| .+||+++.+|
T Consensus        80 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p  159 (224)
T 2pcj_A           80 RNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEP  159 (224)
T ss_dssp             HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCC
T ss_pred             HhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence            1 223333322        2222211            112344556666543    377899999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++  +|||||++||+..++.+++.+++.
T Consensus       160 ~ll--lLDEPt~~LD~~~~~~~~~~l~~l  186 (224)
T 2pcj_A          160 ILL--FADEPTGNLDSANTKRVMDIFLKI  186 (224)
T ss_dssp             SEE--EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             CEE--EEeCCCCCCCHHHHHHHHHHHHHH
Confidence            999  999999999999999999888764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=7.9e-35  Score=244.59  Aligned_cols=152  Identities=18%  Similarity=0.223  Sum_probs=119.1

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc----c--ccc
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR----H--GLN   74 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~----~--~~~   74 (190)
                      |+++|+++|++++|++..+++++||++++||+++|+||||||||||+|+|+|++ ++.+|.|.++|.++.    .  ..+
T Consensus         1 M~~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~G~I~i~G~~i~~~~~~~~~~~   79 (359)
T 3fvq_A            1 MTAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE-QPDSGEISLSGKTIFSKNTNLPVRE   79 (359)
T ss_dssp             --CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS-CCSEEEEEETTEEEESSSCBCCGGG
T ss_pred             CCcEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC-CCCCcEEEECCEECcccccccchhh
Confidence            666899999999999999999999999999999999999999999999999977 789999999998772    1  112


Q ss_pred             cccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613           75 KNLGFSAED--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        75 ~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      ..++|.+|+        ..+++..            -..+..++...++.    ..+..|||||||| ++|||++.+|++
T Consensus        80 r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~l  159 (359)
T 3fvq_A           80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPEL  159 (359)
T ss_dssp             SCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             CCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            334444443        2222211            11233444555554    3488899999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +  +|||||++||+..+..+.+.+.+
T Consensus       160 L--LLDEPts~LD~~~r~~l~~~l~~  183 (359)
T 3fvq_A          160 I--LLDEPFSALDEQLRRQIREDMIA  183 (359)
T ss_dssp             E--EEESTTTTSCHHHHHHHHHHHHH
T ss_pred             E--EEeCCcccCCHHHHHHHHHHHHH
Confidence            9  99999999999999888865543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=1.3e-34  Score=234.63  Aligned_cols=153  Identities=20%  Similarity=0.221  Sum_probs=120.2

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc---c---ccc
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR---H---GLN   74 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~---~---~~~   74 (190)
                      |.+||+++|++++|++.++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++.   .   ..+
T Consensus        21 m~~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~   99 (263)
T 2olj_A           21 MLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE-DFDEGEIIIDGINLKAKDTNLNKVR   99 (263)
T ss_dssp             -CCSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEESSSTTCCHHHHH
T ss_pred             chheEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC-CCCCcEEEECCEECCCccccHHHHh
Confidence            445799999999999888999999999999999999999999999999999987 788999999997763   0   112


Q ss_pred             cccCCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCC
Q 029613           75 KNLGFSAED--------RTENIRR-------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        75 ~~i~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      ..++|.+++        ..+++..             ...+..++...++..    .+..||+||+|| .+||+++.+|+
T Consensus       100 ~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~  179 (263)
T 2olj_A          100 EEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPK  179 (263)
T ss_dssp             HHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             CcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCC
Confidence            223333322        2222211             112344556666643    377899999999 69999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++  +|||||++||+..++.+.+.+++.
T Consensus       180 ll--lLDEPts~LD~~~~~~~~~~l~~l  205 (263)
T 2olj_A          180 IM--LFDEPTSALDPEMVGEVLSVMKQL  205 (263)
T ss_dssp             EE--EEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             EE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            99  999999999999999999888764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=3e-34  Score=233.80  Aligned_cols=151  Identities=17%  Similarity=0.185  Sum_probs=119.3

Q ss_pred             cccccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc------cccc
Q 029613            3 TVGNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH------GLNK   75 (190)
Q Consensus         3 ~~l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~------~~~~   75 (190)
                      +||+++|++++|++ ..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++..      ..+.
T Consensus         6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~-~p~~G~I~~~G~~i~~~~~~~~~~~~   84 (275)
T 3gfo_A            6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL-KPSSGRILFDNKPIDYSRKGIMKLRE   84 (275)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred             cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCeEEEECCEECCcccccHHHHhC
Confidence            37999999999975 45999999999999999999999999999999999977 7889999999987621      1222


Q ss_pred             ccCCChhh---------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCe
Q 029613           76 NLGFSAED---------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        76 ~i~~~~~~---------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      .++|.+++         ..+++..            ...+..++...++..    .+..||+||||| ++|||++.+|++
T Consensus        85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~l  164 (275)
T 3gfo_A           85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV  164 (275)
T ss_dssp             SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            34443332         1222211            112344555666643    378899999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +  +|||||++||+..++.+++.+++.
T Consensus       165 L--lLDEPts~LD~~~~~~i~~~l~~l  189 (275)
T 3gfo_A          165 L--ILDEPTAGLDPMGVSEIMKLLVEM  189 (275)
T ss_dssp             E--EEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             E--EEECccccCCHHHHHHHHHHHHHH
Confidence            9  999999999999999999888764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=4e-34  Score=231.60  Aligned_cols=151  Identities=19%  Similarity=0.201  Sum_probs=119.4

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----------
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----------   71 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----------   71 (190)
                      +|++++|++++|++.++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++..           
T Consensus         5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~   83 (262)
T 1b0u_A            5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE-KPSEGAIIVNGQNINLVRDKDGQLKVA   83 (262)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCEEECTTSSEEES
T ss_pred             ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEcccccccccccccc
Confidence            3799999999999888999999999999999999999999999999999977 7889999999977641           


Q ss_pred             ------ccccccCCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce-----eecccCccHHHH-H
Q 029613           72 ------GLNKNLGFSAED--------RTENIRR-------------VGEVAKLFADAGLIC-----IASLISPYRKDR-D  118 (190)
Q Consensus        72 ------~~~~~i~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~-----~~~~lS~g~kqr-~  118 (190)
                            ..+..++|.+++        ..+++..             -..+..++..+++..     .+..||+||+|| +
T Consensus        84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~  163 (262)
T 1b0u_A           84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS  163 (262)
T ss_dssp             CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred             ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHH
Confidence                  112223333322        2222221             112334555566533     367899999999 6


Q ss_pred             HHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          119 ACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       119 iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +|||++.+|+++  +|||||++||+..++.+.+.+++-
T Consensus       164 lAraL~~~p~ll--lLDEPts~LD~~~~~~~~~~l~~l  199 (262)
T 1b0u_A          164 IARALAMEPDVL--LFDEPTSALDPELVGEVLRIMQQL  199 (262)
T ss_dssp             HHHHHHTCCSEE--EEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCEE--EEeCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999  999999999999999999888764

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=8.5e-34  Score=228.96  Aligned_cols=150  Identities=16%  Similarity=0.141  Sum_probs=119.0

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccCCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLGFS   80 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~~~   80 (190)
                      +|+++|++++|++..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++...   .+..++|.
T Consensus        15 ~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~i~~v   93 (256)
T 1vpl_A           15 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI-KPSSGIVTVFGKNVVEEPHEVRKLISYL   93 (256)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred             eEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCccHHHHhhcEEEE
Confidence            789999999999889999999999999999999999999999999999977 78899999999776321   12223333


Q ss_pred             hhh--------HHHHHHHH------------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613           81 AED--------RTENIRRV------------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMN  135 (190)
Q Consensus        81 ~~~--------~~~~~~~~------------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllD  135 (190)
                      +++        ..+++...            ..+..++...++..    .+..||+||+|| .+||+++.+|+++  +||
T Consensus        94 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll--lLD  171 (256)
T 1vpl_A           94 PEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLA--ILD  171 (256)
T ss_dssp             CTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEE--EEE
T ss_pred             cCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE--EEe
Confidence            332        22222211            12334455555543    377899999999 6999999999999  999


Q ss_pred             CCchhhhhcChHHHHHHHHcC
Q 029613          136 MPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       136 EP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |||++||+..++.+++.+++-
T Consensus       172 EPts~LD~~~~~~l~~~l~~l  192 (256)
T 1vpl_A          172 EPTSGLDVLNAREVRKILKQA  192 (256)
T ss_dssp             STTTTCCHHHHHHHHHHHHHH
T ss_pred             CCccccCHHHHHHHHHHHHHH
Confidence            999999999999999888764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=6.1e-34  Score=239.50  Aligned_cols=152  Identities=22%  Similarity=0.222  Sum_probs=119.9

Q ss_pred             CcccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----
Q 029613            2 ATVGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----   72 (190)
Q Consensus         2 ~~~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----   72 (190)
                      .+||+++|++++|+.    ..+|+++||++++|++++|+||||||||||+|+|+|++ ++.+|+|.++|.++...     
T Consensus        22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~-~p~~G~I~i~G~~i~~~~~~~~  100 (366)
T 3tui_C           22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTEGSVLVDGQELTTLSESEL  100 (366)
T ss_dssp             -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECSSCCHHHH
T ss_pred             CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHH
Confidence            358999999999953    56999999999999999999999999999999999977 78999999999876421     


Q ss_pred             --cccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCC
Q 029613           73 --LNKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLP  125 (190)
Q Consensus        73 --~~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~  125 (190)
                        .+..++|.+|+        ..+++..            -..+..++...++.    ..+..|||||||| +|||||+.
T Consensus       101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~  180 (366)
T 3tui_C          101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS  180 (366)
T ss_dssp             HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT
T ss_pred             HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc
Confidence              12334444432        2222211            11234455555654    3478899999999 69999999


Q ss_pred             CCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          126 DSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +|+++  +|||||++||+..++.+++.+++.
T Consensus       181 ~P~lL--LlDEPTs~LD~~~~~~i~~lL~~l  209 (366)
T 3tui_C          181 NPKVL--LCDQATSALDPATTRSILELLKDI  209 (366)
T ss_dssp             CCSEE--EEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEE--EEECCCccCCHHHHHHHHHHHHHH
Confidence            99999  999999999999999999888763

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=5.7e-34  Score=240.96  Aligned_cols=151  Identities=17%  Similarity=0.128  Sum_probs=119.8

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cccccC
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LNKNLG   78 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~~~i~   78 (190)
                      |. +|+++|++|+|++..+|+++||++++||+++|+||||||||||+|+|+|++ ++.+|.|.++|+++...  ....++
T Consensus         1 M~-~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~G~I~i~G~~~~~~~~~~r~ig   78 (381)
T 3rlf_A            1 MA-SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-TITSGDLFIGEKRMNDTPPAERGVG   78 (381)
T ss_dssp             -C-CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTCCGGGSCEE
T ss_pred             CC-EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC-CCCCeEEEECCEECCCCCHHHCCEE
Confidence            54 689999999999999999999999999999999999999999999999977 78999999999876431  122234


Q ss_pred             CChhh--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613           79 FSAED--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVF  133 (190)
Q Consensus        79 ~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vl  133 (190)
                      |..|+        ..+++..            -..+..++...++.    ..+..|||||||| +||||++.+|+++  +
T Consensus        79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lL--L  156 (381)
T 3rlf_A           79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF--L  156 (381)
T ss_dssp             EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEE--E
T ss_pred             EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEE--E
Confidence            43332        2222211            11234455555554    3488899999999 6999999999999  9


Q ss_pred             eeCCchhhhhcChHHHHHHHHc
Q 029613          134 MNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       134 lDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      |||||++||+..++.+.+.+++
T Consensus       157 LDEPts~LD~~~~~~l~~~l~~  178 (381)
T 3rlf_A          157 LDEPLSNLDAALRVQMRIEISR  178 (381)
T ss_dssp             EESTTTTSCHHHHHHHHHHHHH
T ss_pred             EECCCcCCCHHHHHHHHHHHHH
Confidence            9999999999999988888876

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=1.9e-33  Score=221.33  Aligned_cols=149  Identities=17%  Similarity=0.188  Sum_probs=118.0

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChh
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE   82 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~   82 (190)
                      .+|+++|++++|++ ++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++. ..+..++|.++
T Consensus         9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~-~~~~~i~~v~q   85 (214)
T 1sgw_A            9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL-KPLKGEIIYNGVPIT-KVKGKIFFLPE   85 (214)
T ss_dssp             CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGG-GGGGGEEEECS
T ss_pred             ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEhh-hhcCcEEEEeC
Confidence            37899999999988 9999999999999999999999999999999999977 788999999997763 22222333322


Q ss_pred             h--------HHHHHHHH----------HHHHHHHHHcCcc---eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchh
Q 029613           83 D--------RTENIRRV----------GEVAKLFADAGLI---CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLEL  140 (190)
Q Consensus        83 ~--------~~~~~~~~----------~~~~~~~~~~~~~---~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~  140 (190)
                      +        ..+++...          ..+..++..+++.   ..+..||+||+|| .+||+++.+|+++  +|||||++
T Consensus        86 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~ll--lLDEPts~  163 (214)
T 1sgw_A           86 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIY--VLDDPVVA  163 (214)
T ss_dssp             SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEE--EEESTTTT
T ss_pred             CCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEE--EEECCCcC
Confidence            1        22332211          1233445555553   3467799999999 6999999999999  99999999


Q ss_pred             hhhcChHHHHHHHHcC
Q 029613          141 CEARDPKGLYKLARAG  156 (190)
Q Consensus       141 ld~~~~~~~~~~~~~~  156 (190)
                      ||+..++.+.+.+++-
T Consensus       164 LD~~~~~~l~~~l~~~  179 (214)
T 1sgw_A          164 IDEDSKHKVLKSILEI  179 (214)
T ss_dssp             SCTTTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999888763

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=1.5e-33  Score=224.92  Aligned_cols=150  Identities=19%  Similarity=0.154  Sum_probs=117.0

Q ss_pred             ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------
Q 029613            4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-------   72 (190)
Q Consensus         4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-------   72 (190)
                      |++++|++++|+.    ..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|+|.++|.++...       
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~   79 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD-KPTEGEVYIDNIKTNDLDDDELTK   79 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHH
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCceEEEECCEEcccCCHHHHHH
Confidence            4789999999973    46999999999999999999999999999999999977 78999999999775321       


Q ss_pred             -cccccCCChhh--------HHHHHHH---------------HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHH
Q 029613           73 -LNKNLGFSAED--------RTENIRR---------------VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRA  122 (190)
Q Consensus        73 -~~~~i~~~~~~--------~~~~~~~---------------~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iara  122 (190)
                       .+..++|.+++        ..+++..               ...+..++...++.     ..+..||+||+|| ++|||
T Consensus        80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra  159 (235)
T 3tif_A           80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA  159 (235)
T ss_dssp             HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred             HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence             01123333332        2222211               12234455555553     2478899999999 69999


Q ss_pred             hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++.+|+++  +|||||++||+...+.+.+.+++.
T Consensus       160 l~~~p~ll--llDEPts~LD~~~~~~i~~~l~~l  191 (235)
T 3tif_A          160 LANNPPII--LADQPTWALDSKTGEKIMQLLKKL  191 (235)
T ss_dssp             HTTCCSEE--EEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             HHcCCCEE--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            99999999  999999999999999999888764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=1.4e-33  Score=227.70  Aligned_cols=151  Identities=19%  Similarity=0.172  Sum_probs=119.0

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccccc
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNL   77 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i   77 (190)
                      +|++++|++++|++.++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++...     .+..+
T Consensus         6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i   84 (257)
T 1g6h_A            6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL-KADEGRVYFENKDITNKEPAELYHYGI   84 (257)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred             cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHhCCE
Confidence            4799999999999889999999999999999999999999999999999987 78899999999776321     11223


Q ss_pred             CCChhh--------HHHHHHH-------------------------HHHHHHHHHHcCcce----eecccCccHHHH-HH
Q 029613           78 GFSAED--------RTENIRR-------------------------VGEVAKLFADAGLIC----IASLISPYRKDR-DA  119 (190)
Q Consensus        78 ~~~~~~--------~~~~~~~-------------------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~i  119 (190)
                      +|.+++        ..+++..                         ...+..++...++..    .+..||+||||| ++
T Consensus        85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~i  164 (257)
T 1g6h_A           85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI  164 (257)
T ss_dssp             EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred             EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHH
Confidence            333332        1121110                         112334555556543    377899999999 69


Q ss_pred             HHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          120 CRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       120 arall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ||+++.+|+++  +|||||++||+..++.+++.+++.
T Consensus       165 AraL~~~p~ll--lLDEPts~LD~~~~~~l~~~l~~l  199 (257)
T 1g6h_A          165 GRALMTNPKMI--VMDEPIAGVAPGLAHDIFNHVLEL  199 (257)
T ss_dssp             HHHHHTCCSEE--EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEE--EEeCCccCCCHHHHHHHHHHHHHH
Confidence            99999999999  999999999999999999988764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=2.4e-33  Score=235.61  Aligned_cols=152  Identities=17%  Similarity=0.141  Sum_probs=121.0

Q ss_pred             CCcccccCcceeccCccc--cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------
Q 029613            1 MATVGNSTNIFWQESPIG--RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------   71 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~--~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------   71 (190)
                      |+ ||+++|++++|++.+  +++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++..       
T Consensus         1 M~-~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~~~   78 (353)
T 1oxx_K            1 MV-RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD-VPSTGELYFDDRLVASNGKLIVP   78 (353)
T ss_dssp             CC-CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS-CCSEEEEEETTEEEEETTEESSC
T ss_pred             Cc-EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECcccccccCC
Confidence            54 789999999999888  999999999999999999999999999999999977 7889999999987632       


Q ss_pred             ccccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCC
Q 029613           72 GLNKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        72 ~~~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~  126 (190)
                      ..+..++|.+++        ..+++..            -..+..++...++..    .+..||+||+|| ++|||++.+
T Consensus        79 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~  158 (353)
T 1oxx_K           79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKD  158 (353)
T ss_dssp             GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             hhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence            112234444332        2222211            123344555566543    478899999999 699999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+++  +|||||++||+..++.+.+.+++.
T Consensus       159 P~lL--LLDEP~s~LD~~~r~~l~~~l~~l  186 (353)
T 1oxx_K          159 PSLL--LLDEPFSNLDARMRDSARALVKEV  186 (353)
T ss_dssp             CSEE--EEESTTTTSCGGGHHHHHHHHHHH
T ss_pred             CCEE--EEECCcccCCHHHHHHHHHHHHHH
Confidence            9999  999999999999999999888753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.98  E-value=2.3e-33  Score=229.03  Aligned_cols=150  Identities=17%  Similarity=0.159  Sum_probs=118.7

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc--c----cccccc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR--H----GLNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~--~----~~~~~i   77 (190)
                      |++++|++++|++.++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++.  .    ..+..+
T Consensus        21 ~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~i   99 (279)
T 2ihy_A           21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE-PATSGTVNLFGKMPGKVGYSAETVRQHI   99 (279)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred             eEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCeEEEECCEEcccccCCHHHHcCcE
Confidence            689999999999888999999999999999999999999999999999987 788999999997764  1    112233


Q ss_pred             CCChhh----------HHHHHHH----------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCC
Q 029613           78 GFSAED----------RTENIRR----------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        78 ~~~~~~----------~~~~~~~----------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~  126 (190)
                      +|.+++          ..+++..                ...+..++...++..    .+..||+||||| ++|||++.+
T Consensus       100 ~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~  179 (279)
T 2ihy_A          100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQ  179 (279)
T ss_dssp             EEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred             EEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCC
Confidence            443332          1122110                112334555566543    377899999999 699999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+++  +|||||++||+..++.+++.+++.
T Consensus       180 p~lL--lLDEPts~LD~~~~~~l~~~l~~l  207 (279)
T 2ihy_A          180 PQVL--ILDEPAAGLDFIARESLLSILDSL  207 (279)
T ss_dssp             CSEE--EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             CCEE--EEeCCccccCHHHHHHHHHHHHHH
Confidence            9999  999999999999999999888764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.98  E-value=3.6e-33  Score=234.85  Aligned_cols=151  Identities=15%  Similarity=0.115  Sum_probs=119.3

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccC
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLG   78 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~   78 (190)
                      |+ +++++|++++|++..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++..  .....++
T Consensus         1 M~-~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig   78 (359)
T 2yyz_A            1 MP-SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY-KPTSGEIYFDDVLVNDIPPKYREVG   78 (359)
T ss_dssp             -C-CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGTTEE
T ss_pred             Cc-EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC-CCCccEEEECCEECCCCChhhCcEE
Confidence            54 689999999999889999999999999999999999999999999999977 7889999999987642  1112233


Q ss_pred             CChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613           79 FSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVF  133 (190)
Q Consensus        79 ~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vl  133 (190)
                      |.+++        ..+++..            -..+..++...++..    .+..||+||+|| ++|||++.+|+++  +
T Consensus        79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lL--L  156 (359)
T 2yyz_A           79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVL--L  156 (359)
T ss_dssp             EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE--E
T ss_pred             EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE--E
Confidence            33332        2232211            012344555566543    478899999999 6999999999999  9


Q ss_pred             eeCCchhhhhcChHHHHHHHHc
Q 029613          134 MNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       134 lDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      |||||++||+..++.+.+.+++
T Consensus       157 LDEP~s~LD~~~r~~l~~~l~~  178 (359)
T 2yyz_A          157 FDEPLSNLDANLRMIMRAEIKH  178 (359)
T ss_dssp             EESTTTTSCHHHHHHHHHHHHH
T ss_pred             EECCcccCCHHHHHHHHHHHHH
Confidence            9999999999999998888765

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.98  E-value=6.2e-33  Score=232.98  Aligned_cols=150  Identities=17%  Similarity=0.186  Sum_probs=120.2

Q ss_pred             cccccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCC
Q 029613            3 TVGNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGF   79 (190)
Q Consensus         3 ~~l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~   79 (190)
                      ++|+++|++++| ++.++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++..  ..+..++|
T Consensus        13 ~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~   91 (355)
T 1z47_A           13 MTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE-RPTKGDVWIGGKRVTDLPPQKRNVGL   91 (355)
T ss_dssp             EEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTCCGGGSSEEE
T ss_pred             ceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEECCEECCcCChhhCcEEE
Confidence            478999999999 8888999999999999999999999999999999999977 7899999999987642  11223444


Q ss_pred             Chhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEe
Q 029613           80 SAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFM  134 (190)
Q Consensus        80 ~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vll  134 (190)
                      .+++        ..+++..            -..+..++...++..    .+..||+||+|| ++|||++.+|+++  +|
T Consensus        92 v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL--LL  169 (355)
T 1z47_A           92 VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVL--LF  169 (355)
T ss_dssp             ECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE--EE
T ss_pred             EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE--EE
Confidence            4433        2233221            112344555666543    478899999999 6999999999999  99


Q ss_pred             eCCchhhhhcChHHHHHHHHc
Q 029613          135 NMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       135 DEP~~~ld~~~~~~~~~~~~~  155 (190)
                      ||||++||+..++.+.+.+++
T Consensus       170 DEP~s~LD~~~r~~l~~~l~~  190 (355)
T 1z47_A          170 DEPFAAIDTQIRRELRTFVRQ  190 (355)
T ss_dssp             ESTTCCSSHHHHHHHHHHHHH
T ss_pred             eCCcccCCHHHHHHHHHHHHH
Confidence            999999999999998888775

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.98  E-value=4.4e-33  Score=234.49  Aligned_cols=152  Identities=18%  Similarity=0.169  Sum_probs=120.7

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccC
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLG   78 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~   78 (190)
                      |+ +++++|++++|++.++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++..  .....++
T Consensus         1 m~-~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig   78 (362)
T 2it1_A            1 MV-EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY-KPTSGKIYFDEKDVTELPPKDRNVG   78 (362)
T ss_dssp             CC-CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGTTEE
T ss_pred             Cc-EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC-CCCceEEEECCEECCcCCHhHCcEE
Confidence            54 689999999999888999999999999999999999999999999999977 7889999999987642  1122334


Q ss_pred             CChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEE
Q 029613           79 FSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVF  133 (190)
Q Consensus        79 ~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vl  133 (190)
                      |.+++        ..+++..            -..+.+++...++..    .+..||+||+|| ++|||++.+|+++  +
T Consensus        79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL--L  156 (362)
T 2it1_A           79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVL--L  156 (362)
T ss_dssp             EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEE--E
T ss_pred             EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEE--E
Confidence            43332        2233221            112344555566543    478899999999 6999999999999  9


Q ss_pred             eeCCchhhhhcChHHHHHHHHcC
Q 029613          134 MNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       134 lDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |||||++||+..++.+.+.+++.
T Consensus       157 LDEP~s~LD~~~r~~l~~~l~~l  179 (362)
T 2it1_A          157 LDEPLSNLDALLRLEVRAELKRL  179 (362)
T ss_dssp             EESGGGGSCHHHHHHHHHHHHHH
T ss_pred             EECccccCCHHHHHHHHHHHHHH
Confidence            99999999999999988888753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.98  E-value=1.3e-33  Score=229.14  Aligned_cols=150  Identities=19%  Similarity=0.222  Sum_probs=117.3

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----cccccCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----LNKNLGF   79 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----~~~~i~~   79 (190)
                      |++++|++++|++.++|+++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++...    ....++|
T Consensus        11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~i~~   89 (266)
T 4g1u_C           11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL-SPSHGECHLLGQNLNSWQPKALARTRAV   89 (266)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS-CCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred             eEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECCcCCHHHHhheEEE
Confidence            689999999999999999999999999999999999999999999999977 78899999999876421    1111121


Q ss_pred             Chh--------hHHHHHHH----------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCC------CCCeE
Q 029613           80 SAE--------DRTENIRR----------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLP------DSNFI  130 (190)
Q Consensus        80 ~~~--------~~~~~~~~----------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~------~~~il  130 (190)
                      .++        ...+++..          ...+..++...++.    ..+..||+||+|| .+|||++.      +|+++
T Consensus        90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lL  169 (266)
T 4g1u_C           90 MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWL  169 (266)
T ss_dssp             ECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEE
T ss_pred             EecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEE
Confidence            111        12222211          11233445555543    2477899999999 69999999      99999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +|||||++||+..+..+++.+++.
T Consensus       170 --llDEPts~LD~~~~~~i~~~l~~l  193 (266)
T 4g1u_C          170 --FLDEPTSALDLYHQQHTLRLLRQL  193 (266)
T ss_dssp             --EECCCCSSCCHHHHHHHHHHHHHH
T ss_pred             --EEeCccccCCHHHHHHHHHHHHHH
Confidence              999999999999999999888764

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.98  E-value=3e-33  Score=223.76  Aligned_cols=151  Identities=15%  Similarity=0.176  Sum_probs=116.5

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccccc
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNL   77 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i   77 (190)
                      +|++++|++++|++.++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++...     .+..+
T Consensus         5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i   83 (240)
T 1ji0_A            5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV-RAQKGKIIFNGQDITNKPAHVINRMGI   83 (240)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred             ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCCHHHHHhCCE
Confidence            3799999999999888999999999999999999999999999999999977 78899999999776321     11123


Q ss_pred             CCChhh--------HHHHHHH-----------HHHHHHHHHHcC-c----ceeecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613           78 GFSAED--------RTENIRR-----------VGEVAKLFADAG-L----ICIASLISPYRKDR-DACRAMLPDSNFIEV  132 (190)
Q Consensus        78 ~~~~~~--------~~~~~~~-----------~~~~~~~~~~~~-~----~~~~~~lS~g~kqr-~iarall~~~~il~v  132 (190)
                      +|.+++        ..+++..           ...+..++..++ +    ...+..||+||+|| .+||+++.+|+++  
T Consensus        84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll--  161 (240)
T 1ji0_A           84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLL--  161 (240)
T ss_dssp             EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEE--
T ss_pred             EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE--
Confidence            333321        1222211           011222333332 3    23477899999999 6999999999999  


Q ss_pred             EeeCCchhhhhcChHHHHHHHHcC
Q 029613          133 FMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       133 llDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +|||||++||+..++.+++.+++-
T Consensus       162 lLDEPts~LD~~~~~~l~~~l~~~  185 (240)
T 1ji0_A          162 MMDEPSLGLAPILVSEVFEVIQKI  185 (240)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999888764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.97  E-value=4.5e-33  Score=235.35  Aligned_cols=151  Identities=15%  Similarity=0.139  Sum_probs=119.7

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--------c
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--------G   72 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--------~   72 (190)
                      |+ ||+++|++++|++..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++..        .
T Consensus         1 M~-~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~~~~~~~~~~~~~   78 (372)
T 1g29_1            1 MA-GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE-EPSRGQIYIGDKLVADPEKGIFVPP   78 (372)
T ss_dssp             CE-EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEEEEEGGGTEECCG
T ss_pred             CC-EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC-CCCccEEEECCEECccccccccCCH
Confidence            54 689999999999889999999999999999999999999999999999977 7889999999987643        1


Q ss_pred             cccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCC
Q 029613           73 LNKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        73 ~~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~  127 (190)
                      ....++|.+++        ..+++..            -..+..++...++.    ..+..||+||+|| ++|||++.+|
T Consensus        79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P  158 (372)
T 1g29_1           79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKP  158 (372)
T ss_dssp             GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            12234443332        2232221            01233445555553    3478899999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +++  +|||||++||+..++.+.+.+++
T Consensus       159 ~lL--LLDEP~s~LD~~~r~~l~~~l~~  184 (372)
T 1g29_1          159 QVF--LMDEPLSNLDAKLRVRMRAELKK  184 (372)
T ss_dssp             SEE--EEECTTTTSCHHHHHHHHHHHHH
T ss_pred             CEE--EECCCCccCCHHHHHHHHHHHHH
Confidence            999  99999999999999988888765

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.97  E-value=6.9e-33  Score=234.07  Aligned_cols=149  Identities=15%  Similarity=0.117  Sum_probs=118.7

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCCh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSA   81 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~   81 (190)
                      +++++|++++|++..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++..  .....++|.+
T Consensus        11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~v~   89 (372)
T 1v43_A           11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE-EPTEGRIYFGDRDVTYLPPKDRNISMVF   89 (372)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred             eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCceEEEECCEECCCCChhhCcEEEEe
Confidence            589999999999888999999999999999999999999999999999977 7899999999987642  1122344444


Q ss_pred             hh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613           82 ED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNM  136 (190)
Q Consensus        82 ~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDE  136 (190)
                      ++        ..+++..            -..+..++...++..    .+..||+||+|| ++|||++.+|+++  +|||
T Consensus        90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL--LLDE  167 (372)
T 1v43_A           90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVL--LMDE  167 (372)
T ss_dssp             C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEE--EEES
T ss_pred             cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE--EEcC
Confidence            33        1222211            112344555566543    478899999999 6999999999999  9999


Q ss_pred             CchhhhhcChHHHHHHHHc
Q 029613          137 PLELCEARDPKGLYKLARA  155 (190)
Q Consensus       137 P~~~ld~~~~~~~~~~~~~  155 (190)
                      ||++||+..++.+.+.+++
T Consensus       168 P~s~LD~~~r~~l~~~l~~  186 (372)
T 1v43_A          168 PLSNLDAKLRVAMRAEIKK  186 (372)
T ss_dssp             TTTTSCHHHHHHHHHHHHH
T ss_pred             CCccCCHHHHHHHHHHHHH
Confidence            9999999999998888875

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.97  E-value=8.9e-33  Score=231.64  Aligned_cols=148  Identities=15%  Similarity=0.187  Sum_probs=118.7

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCCh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSA   81 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~   81 (190)
                      |++++|++++|++. +++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++..  ..+..++|.+
T Consensus         1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~v~   78 (348)
T 3d31_A            1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH-VPDSGRILLDGKDVTDLSPEKHDIAFVY   78 (348)
T ss_dssp             CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS-CCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred             CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC-CCCCcEEEECCEECCCCchhhCcEEEEe
Confidence            47899999999888 999999999999999999999999999999999977 7899999999987642  1122344443


Q ss_pred             hh--------HHHHHHHH---------HHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613           82 ED--------RTENIRRV---------GEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE  139 (190)
Q Consensus        82 ~~--------~~~~~~~~---------~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~  139 (190)
                      ++        ..+++...         ..+..++...++.    ..+..||+||+|| ++|||++.+|+++  +|||||+
T Consensus        79 Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lL--LLDEP~s  156 (348)
T 3d31_A           79 QNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKIL--LLDEPLS  156 (348)
T ss_dssp             TTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEE--EEESSST
T ss_pred             cCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE--EEECccc
Confidence            32        23333221         2344455556554    3478899999999 6999999999999  9999999


Q ss_pred             hhhhcChHHHHHHHHc
Q 029613          140 LCEARDPKGLYKLARA  155 (190)
Q Consensus       140 ~ld~~~~~~~~~~~~~  155 (190)
                      +||+..++.+.+.+++
T Consensus       157 ~LD~~~~~~l~~~l~~  172 (348)
T 3d31_A          157 ALDPRTQENAREMLSV  172 (348)
T ss_dssp             TSCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            9999999998888875

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.97  E-value=7.2e-33  Score=222.76  Aligned_cols=157  Identities=18%  Similarity=0.130  Sum_probs=115.7

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH-hhCCCcEEEEcCcccccc-----cc
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL-YSRGKLSYILDGDNLRHG-----LN   74 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l-~~~~~g~i~~~g~~~~~~-----~~   74 (190)
                      |+ |++++|++++|++.++++++||++++|++++|+||||||||||+|+|+|++ .++.+|.|.++|.++...     .+
T Consensus         1 M~-~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~   79 (250)
T 2d2e_A            1 MS-QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR   79 (250)
T ss_dssp             -C-EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred             Cc-eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence            54 789999999999888999999999999999999999999999999999972 267899999999876321     11


Q ss_pred             cccCCChhh--------HHHHHHH---------------HHHHHHHHHHcCc-ce----eecc-cCccHHHH-HHHHHhC
Q 029613           75 KNLGFSAED--------RTENIRR---------------VGEVAKLFADAGL-IC----IASL-ISPYRKDR-DACRAML  124 (190)
Q Consensus        75 ~~i~~~~~~--------~~~~~~~---------------~~~~~~~~~~~~~-~~----~~~~-lS~g~kqr-~iarall  124 (190)
                      ..++|.+++        ..+++..               ...+..++...++ ..    .+.. ||+||+|| .+||+++
T Consensus        80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~  159 (250)
T 2d2e_A           80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLV  159 (250)
T ss_dssp             TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHH
T ss_pred             CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence            223443332        1122211               1123344455555 22    3566 99999999 6999999


Q ss_pred             CCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          125 PDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      .+|+++  +|||||++||+..++.+.+.+++....|
T Consensus       160 ~~p~ll--lLDEPts~LD~~~~~~l~~~l~~l~~~g  193 (250)
T 2d2e_A          160 LEPTYA--VLDETDSGLDIDALKVVARGVNAMRGPN  193 (250)
T ss_dssp             HCCSEE--EEECGGGTTCHHHHHHHHHHHHHHCSTT
T ss_pred             cCCCEE--EEeCCCcCCCHHHHHHHHHHHHHHHhcC
Confidence            999999  9999999999999999999998753334

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.97  E-value=3.5e-32  Score=217.60  Aligned_cols=147  Identities=15%  Similarity=0.149  Sum_probs=115.8

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCCh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSA   81 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~   81 (190)
                      |++++|++++|+.  +++++||++++ ++++|+||||||||||+|+|+|++ +|.+|.|.++|.++..  ..+..++|.+
T Consensus         1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~i~~v~   76 (240)
T 2onk_A            1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV-KPDRGEVRLNGADITPLPPERRGIGFVP   76 (240)
T ss_dssp             CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred             CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCchhhCcEEEEc
Confidence            4789999999976  49999999999 999999999999999999999987 7889999999977632  1222344444


Q ss_pred             hh--------HHHHHHH----------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613           82 ED--------RTENIRR----------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL  138 (190)
Q Consensus        82 ~~--------~~~~~~~----------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~  138 (190)
                      ++        ..+++..          -..+..++...++..    .+..||+||+|| .+||+++.+|+++  +|||||
T Consensus        77 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll--lLDEPt  154 (240)
T 2onk_A           77 QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLL--LLDEPL  154 (240)
T ss_dssp             SSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSB--EEESTT
T ss_pred             CCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE--EEeCCc
Confidence            32        1222211          122344555566533    477899999999 6999999999999  999999


Q ss_pred             hhhhhcChHHHHHHHHcC
Q 029613          139 ELCEARDPKGLYKLARAG  156 (190)
Q Consensus       139 ~~ld~~~~~~~~~~~~~~  156 (190)
                      ++||+..++.+++.+++.
T Consensus       155 s~LD~~~~~~~~~~l~~l  172 (240)
T 2onk_A          155 SAVDLKTKGVLMEELRFV  172 (240)
T ss_dssp             SSCCHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHH
Confidence            999999999999888753

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.97  E-value=3.1e-32  Score=220.96  Aligned_cols=150  Identities=19%  Similarity=0.238  Sum_probs=117.4

Q ss_pred             ccccCcceeccC--c---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-cccccc
Q 029613            4 VGNSTNIFWQES--P---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-GLNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~--~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-~~~~~i   77 (190)
                      |++++|++++|+  .   +++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++.. ..+..+
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-~p~~G~I~~~g~~~~~~~~~~~i   80 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI-EPTSGDVLYDGERKKGYEIRRNI   80 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCHHHHGGGE
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEECCEECchHHhhhhE
Confidence            689999999997  4   57999999999999999999999999999999999977 7889999999976532 111222


Q ss_pred             CCChhh---------HHHHHHH-----------HHHHHHHHHHcCcc--e----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613           78 GFSAED---------RTENIRR-----------VGEVAKLFADAGLI--C----IASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        78 ~~~~~~---------~~~~~~~-----------~~~~~~~~~~~~~~--~----~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      +|.+++         ..+++..           ...+..++...++.  .    .+..||+||+|| .+||+++.+|+++
T Consensus        81 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll  160 (266)
T 2yz2_A           81 GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL  160 (266)
T ss_dssp             EEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            332221         2222221           01234455556654  3    377899999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +|||||++||+..++.+.+.+++-
T Consensus       161 --lLDEPts~LD~~~~~~l~~~l~~l  184 (266)
T 2yz2_A          161 --ILDEPLVGLDREGKTDLLRIVEKW  184 (266)
T ss_dssp             --EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             --EEcCccccCCHHHHHHHHHHHHHH
Confidence              999999999999999999888764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.97  E-value=2.9e-32  Score=221.71  Aligned_cols=151  Identities=17%  Similarity=0.200  Sum_probs=115.9

Q ss_pred             cccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----ccc
Q 029613            3 TVGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----LNK   75 (190)
Q Consensus         3 ~~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----~~~   75 (190)
                      .||+++|++++|++   ..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++...    .+.
T Consensus        15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~   93 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY-QPTGGKVLLDGEPLVQYDHHYLHT   93 (271)
T ss_dssp             CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGGGBCHHHHHH
T ss_pred             ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCEEEECCEEcccCCHHHHhc
Confidence            37899999999986   78999999999999999999999999999999999977 78899999999876321    111


Q ss_pred             ccCCChhh-------HHHHHHH----------H------HHHHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCC
Q 029613           76 NLGFSAED-------RTENIRR----------V------GEVAKLFADA--GLI----CIASLISPYRKDR-DACRAMLP  125 (190)
Q Consensus        76 ~i~~~~~~-------~~~~~~~----------~------~~~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~  125 (190)
                      .++|.+++       ..+++..          +      ..+..++...  ++.    ..+..||+||+|| .+||+++.
T Consensus        94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~  173 (271)
T 2ixe_A           94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR  173 (271)
T ss_dssp             HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred             cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence            22332221       2222211          0      0112233333  232    3367899999999 69999999


Q ss_pred             CCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          126 DSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +|+++  +|||||++||+..++.+.+.+++.
T Consensus       174 ~p~ll--lLDEPts~LD~~~~~~i~~~l~~~  202 (271)
T 2ixe_A          174 KPRLL--ILDNATSALDAGNQLRVQRLLYES  202 (271)
T ss_dssp             CCSEE--EEESTTTTCCHHHHHHHHHHHHHC
T ss_pred             CCCEE--EEECCccCCCHHHHHHHHHHHHHH
Confidence            99999  999999999999999999999875

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.97  E-value=2.3e-32  Score=220.26  Aligned_cols=149  Identities=12%  Similarity=0.045  Sum_probs=111.0

Q ss_pred             CCcccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--------
Q 029613            1 MATVGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--------   71 (190)
Q Consensus         1 m~~~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--------   71 (190)
                      |++|++++|++++|+ +..+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.+.. .+..        
T Consensus         1 M~~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~~-~i~~v~q~~~~~   78 (253)
T 2nq2_C            1 MNKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH-RPIQGKIEVYQ-SIGFVPQFFSSP   78 (253)
T ss_dssp             -CEEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS-CCSEEEEEECS-CEEEECSCCCCS
T ss_pred             CCceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEEec-cEEEEcCCCccC
Confidence            667899999999998 888999999999999999999999999999999999987 78889886421 1100        


Q ss_pred             ---ccccccCCChh--------hHHHHHHHHHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEee
Q 029613           72 ---GLNKNLGFSAE--------DRTENIRRVGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMN  135 (190)
Q Consensus        72 ---~~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllD  135 (190)
                         ....++.+...        ...+..   ..+..++...++..    .+..||+||+|| .+||+++.+|+++  +||
T Consensus        79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll--lLD  153 (253)
T 2nq2_C           79 FAYSVLDIVLMGRSTHINTFAKPKSHDY---QVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLI--LLD  153 (253)
T ss_dssp             SCCBHHHHHHGGGGGGSCTTCCCCHHHH---HHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEE--EES
T ss_pred             CCCCHHHHHHHhhhhhcccccCCCHHHH---HHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE--EEe
Confidence               00000000000        000001   12333445555533    377899999999 6999999999999  999


Q ss_pred             CCchhhhhcChHHHHHHHHcC
Q 029613          136 MPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       136 EP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |||++||+..++.+.+.+++-
T Consensus       154 EPts~LD~~~~~~l~~~l~~l  174 (253)
T 2nq2_C          154 EPTSALDLANQDIVLSLLIDL  174 (253)
T ss_dssp             SSSTTSCHHHHHHHHHHHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999888763

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.97  E-value=1.3e-32  Score=220.44  Aligned_cols=150  Identities=16%  Similarity=0.181  Sum_probs=114.2

Q ss_pred             ccccCcceecc-CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            4 VGNSTNIFWQE-SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~-~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      |++++|++++| ++.++++++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..    ..+..++
T Consensus         1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (243)
T 1mv5_A            1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY-QPTAGEITIDGQPIDNISLENWRSQIG   79 (243)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS-CCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred             CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence            47899999999 6678999999999999999999999999999999999977 7889999999976532    1122334


Q ss_pred             CChhh-------HHHHHHH-------HHHHHHHHHHcCcce---------------eecccCccHHHH-HHHHHhCCCCC
Q 029613           79 FSAED-------RTENIRR-------VGEVAKLFADAGLIC---------------IASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        79 ~~~~~-------~~~~~~~-------~~~~~~~~~~~~~~~---------------~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      |.+++       ..+++..       -..+...+...++..               .+..||+||+|| .+||+++.+|+
T Consensus        80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~  159 (243)
T 1mv5_A           80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK  159 (243)
T ss_dssp             EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred             EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence            33332       2222211       011222222222211               246799999999 69999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++  +|||||++||+..++.+.+.+++-
T Consensus       160 ll--lLDEPts~LD~~~~~~i~~~l~~~  185 (243)
T 1mv5_A          160 IL--MLDEATASLDSESESMVQKALDSL  185 (243)
T ss_dssp             EE--EEECCSCSSCSSSCCHHHHHHHHH
T ss_pred             EE--EEECCcccCCHHHHHHHHHHHHHh
Confidence            99  999999999999999999988764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.97  E-value=5e-32  Score=219.84  Aligned_cols=157  Identities=14%  Similarity=0.018  Sum_probs=118.7

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH-hhCCCcEEEEcCcccccc----c-ccc
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL-YSRGKLSYILDGDNLRHG----L-NKN   76 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l-~~~~~g~i~~~g~~~~~~----~-~~~   76 (190)
                      +|++++|++++|+++++++++||++++|++++|+||||||||||+|+|+|++ .++.+|.|.++|.++...    . +..
T Consensus        19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~   98 (267)
T 2zu0_C           19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG   98 (267)
T ss_dssp             -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred             ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence            3789999999999889999999999999999999999999999999999974 257789999999876321    0 111


Q ss_pred             cCCChhh--------HHHHHHH-------------------HHHHHHHHHHcCcc-e----eec-ccCccHHHH-HHHHH
Q 029613           77 LGFSAED--------RTENIRR-------------------VGEVAKLFADAGLI-C----IAS-LISPYRKDR-DACRA  122 (190)
Q Consensus        77 i~~~~~~--------~~~~~~~-------------------~~~~~~~~~~~~~~-~----~~~-~lS~g~kqr-~iara  122 (190)
                      ++|.+++        ..+++..                   ...+..++...++. .    .+. .||+||||| ++|||
T Consensus        99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAra  178 (267)
T 2zu0_C           99 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM  178 (267)
T ss_dssp             EEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHH
T ss_pred             EEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHH
Confidence            2332221        1111110                   11233455555553 1    244 499999999 69999


Q ss_pred             hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCc
Q 029613          123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGL  161 (190)
Q Consensus       123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~  161 (190)
                      ++.+|+++  +|||||++||+..++.+.+.+++...+|.
T Consensus       179 L~~~p~lL--lLDEPts~LD~~~~~~l~~~l~~l~~~g~  215 (267)
T 2zu0_C          179 AVLEPELC--ILDESDSGLDIDALKVVADGVNSLRDGKR  215 (267)
T ss_dssp             HHHCCSEE--EEESTTTTCCHHHHHHHHHHHHTTCCSSC
T ss_pred             HHhCCCEE--EEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence            99999999  99999999999999999999987644443

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.97  E-value=2.8e-32  Score=219.05  Aligned_cols=149  Identities=21%  Similarity=0.209  Sum_probs=112.0

Q ss_pred             cccCcceecc--CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQE--SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~--~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      ++++|++++|  +...+++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.++..    ..+..++
T Consensus         8 ~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~I~i~g~~~~~~~~~~~~~~i~   86 (247)
T 2ff7_A            8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY-IPENGQVLIDGHDLALADPNWLRRQVG   86 (247)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred             eeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence            6789999999  4678999999999999999999999999999999999977 7889999999977532    1112223


Q ss_pred             CChhh-------HHHHHHH------HHHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCCCCe
Q 029613           79 FSAED-------RTENIRR------VGEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        79 ~~~~~-------~~~~~~~------~~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      |.+++       ..+++..      ...+...+...++.               ..+..||+||+|| ++||+++.+|++
T Consensus        87 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~l  166 (247)
T 2ff7_A           87 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI  166 (247)
T ss_dssp             EECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred             EEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            32221       2222211      01111222222221               1246799999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +  +|||||++||+..++.+.+.+++-
T Consensus       167 l--lLDEPts~LD~~~~~~i~~~l~~~  191 (247)
T 2ff7_A          167 L--IFDEATSALDYESEHVIMRNMHKI  191 (247)
T ss_dssp             E--EECCCCSCCCHHHHHHHHHHHHHH
T ss_pred             E--EEeCCcccCCHHHHHHHHHHHHHH
Confidence            9  999999999999999999988764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.97  E-value=4.1e-32  Score=218.32  Aligned_cols=148  Identities=17%  Similarity=0.140  Sum_probs=114.8

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN   76 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~   76 (190)
                      |++|++++|++++    ++++++||++++|++++|+||||||||||+|+|+|++ ++. |.|.++|.++..    ..+..
T Consensus         1 M~~~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~-~p~-G~i~~~g~~~~~~~~~~~~~~   74 (249)
T 2qi9_C            1 MSIVMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGK-GSIQFAGQPLEAWSATKLALH   74 (249)
T ss_dssp             -CEEEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCE-EEEEETTEEGGGSCHHHHHHH
T ss_pred             CCcEEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCC-eEEEECCEECCcCCHHHHhce
Confidence            6778999999988    6999999999999999999999999999999999987 677 999999987632    11112


Q ss_pred             cCCChhh--------HHHHHHH-------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCC-------e
Q 029613           77 LGFSAED--------RTENIRR-------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSN-------F  129 (190)
Q Consensus        77 i~~~~~~--------~~~~~~~-------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~-------i  129 (190)
                      ++|.+++        ..+++..       ...+..++...++..    .+..||+||+|| .+||+++.+|+       +
T Consensus        75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l  154 (249)
T 2qi9_C           75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL  154 (249)
T ss_dssp             EEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred             EEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE
Confidence            2322221        2233221       122344555556543    377899999999 69999999999       9


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +  +|||||++||+..++.+.+.+++-
T Consensus       155 l--lLDEPts~LD~~~~~~l~~~l~~l  179 (249)
T 2qi9_C          155 L--LLDEPMNSLDVAQQSALDKILSAL  179 (249)
T ss_dssp             E--EESSTTTTCCHHHHHHHHHHHHHH
T ss_pred             E--EEECCcccCCHHHHHHHHHHHHHH
Confidence            9  999999999999999999888764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.97  E-value=5.8e-32  Score=223.21  Aligned_cols=150  Identities=17%  Similarity=0.203  Sum_probs=113.8

Q ss_pred             ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      .|+++|++++|+ +..+|+++||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..    .++..++
T Consensus        53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~p~~G~I~i~G~~i~~~~~~~~r~~i~  131 (306)
T 3nh6_A           53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY-DISSGCIRIDGQDISQVTQASLRSHIG  131 (306)
T ss_dssp             CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS-CCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred             eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC-CCCCcEEEECCEEcccCCHHHHhcceE
Confidence            478999999995 578999999999999999999999999999999999977 7899999999987643    1223344


Q ss_pred             CChhh-------HHHHHHH---------HHHH------HHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613           79 FSAED-------RTENIRR---------VGEV------AKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        79 ~~~~~-------~~~~~~~---------~~~~------~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      |.+++       ..+++..         +...      ...+...  ++.    ..+..|||||||| +||||++.+|++
T Consensus       132 ~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~i  211 (306)
T 3nh6_A          132 VVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI  211 (306)
T ss_dssp             EECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred             EEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCE
Confidence            44332       2222211         1111      1111111  221    1246799999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +  +|||||++||+...+.+.+.+++.
T Consensus       212 L--lLDEPts~LD~~~~~~i~~~l~~l  236 (306)
T 3nh6_A          212 I--LLDEATSALDTSNERAIQASLAKV  236 (306)
T ss_dssp             E--EEECCSSCCCHHHHHHHHHHHHHH
T ss_pred             E--EEECCcccCCHHHHHHHHHHHHHH
Confidence            9  999999999999999999888763

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.97  E-value=4.3e-31  Score=213.91  Aligned_cols=149  Identities=17%  Similarity=0.065  Sum_probs=119.0

Q ss_pred             ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-cccccC
Q 029613            4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-LNKNLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-~~~~i~   78 (190)
                      |++++|++++|++    ..+++++||+++ |++++|+||||||||||+|+|+|++  |.+|.|.++|.++... .+..++
T Consensus         1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~--p~~G~I~~~g~~~~~~~~~~~i~   77 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--PYSGNIFINGMEVRKIRNYIRYS   77 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS--CCEEEEEETTEEGGGCSCCTTEE
T ss_pred             CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC--CCCcEEEECCEECcchHHhhheE
Confidence            4789999999987    789999999999 9999999999999999999999966  7899999999766421 122355


Q ss_pred             -CChhh------HHHHHHHH--------HHHHHHHHHcCcc-e----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613           79 -FSAED------RTENIRRV--------GEVAKLFADAGLI-C----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMP  137 (190)
Q Consensus        79 -~~~~~------~~~~~~~~--------~~~~~~~~~~~~~-~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP  137 (190)
                       |.+++      ..+++...        ..+..++...++. .    .+..||+||+|| .+||+++.+|+++  +||||
T Consensus        78 ~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll--lLDEP  155 (263)
T 2pjz_A           78 TNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIV--GLDEP  155 (263)
T ss_dssp             ECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEE--EEECT
T ss_pred             EEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEE--EEECC
Confidence             55543      23333221        1234455556654 3    377899999999 6999999999999  99999


Q ss_pred             chhhhhcChHHHHHHHHcCC
Q 029613          138 LELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       138 ~~~ld~~~~~~~~~~~~~~~  157 (190)
                      |++||+..++.+++.+++-.
T Consensus       156 ts~LD~~~~~~l~~~L~~~~  175 (263)
T 2pjz_A          156 FENVDAARRHVISRYIKEYG  175 (263)
T ss_dssp             TTTCCHHHHHHHHHHHHHSC
T ss_pred             ccccCHHHHHHHHHHHHHhc
Confidence            99999999999999998753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.97  E-value=3.5e-31  Score=210.35  Aligned_cols=148  Identities=15%  Similarity=0.106  Sum_probs=107.0

Q ss_pred             CCcccccCcceeccC--ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccC
Q 029613            1 MATVGNSTNIFWQES--PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLG   78 (190)
Q Consensus         1 m~~~l~~~~l~~~~~--~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~   78 (190)
                      |+.+++++|++++|+  ..++++++||++++|++++|+||||||||||+|+|+|++ ++.+|+|.++|.--..  .+...
T Consensus         3 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~i~~v--~q~~~   79 (229)
T 2pze_A            3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSGRISFC--SQFSW   79 (229)
T ss_dssp             CCEEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEECSCEEEE--CSSCC
T ss_pred             ccceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCccEEEECCEEEEE--ecCCc
Confidence            556899999999995  478999999999999999999999999999999999987 7889999998741100  00000


Q ss_pred             CChhhHHHHHHH--------HHH------HHHHHHHcCc------ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613           79 FSAEDRTENIRR--------VGE------VAKLFADAGL------ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMP  137 (190)
Q Consensus        79 ~~~~~~~~~~~~--------~~~------~~~~~~~~~~------~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP  137 (190)
                      +.+....+++..        ...      +...+.....      ...+..||+||||| .+||+++.+|+++  +||||
T Consensus        80 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ll--lLDEP  157 (229)
T 2pze_A           80 IMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY--LLDSP  157 (229)
T ss_dssp             CCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEE--EEEST
T ss_pred             ccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEE--EEECc
Confidence            000011111110        001      1111111111      01246899999999 6999999999999  99999


Q ss_pred             chhhhhcChHHHHHHH
Q 029613          138 LELCEARDPKGLYKLA  153 (190)
Q Consensus       138 ~~~ld~~~~~~~~~~~  153 (190)
                      |++||+..++.+.+.+
T Consensus       158 ts~LD~~~~~~i~~~l  173 (229)
T 2pze_A          158 FGYLDVLTEKEIFESC  173 (229)
T ss_dssp             TTTSCHHHHHHHHHHC
T ss_pred             ccCCCHHHHHHHHHHH
Confidence            9999999999999864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.97  E-value=4.7e-32  Score=216.47  Aligned_cols=148  Identities=20%  Similarity=0.217  Sum_probs=107.7

Q ss_pred             CCcccccCcceeccC--ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccC
Q 029613            1 MATVGNSTNIFWQES--PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLG   78 (190)
Q Consensus         1 m~~~l~~~~l~~~~~--~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~   78 (190)
                      |+ +++++|++++|+  +.++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.- .. +.+...
T Consensus         1 M~-~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~i-~~-v~Q~~~   76 (237)
T 2cbz_A            1 MN-SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-DKVEGHVAIKGSV-AY-VPQQAW   76 (237)
T ss_dssp             -C-CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS-EEEEEEEEECSCE-EE-ECSSCC
T ss_pred             CC-eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEE-EE-EcCCCc
Confidence            54 789999999997  578999999999999999999999999999999999987 7789999998741 10 000000


Q ss_pred             CChhhHHHHH-----------HHHHHHHHHHHHcCc---------ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613           79 FSAEDRTENI-----------RRVGEVAKLFADAGL---------ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMP  137 (190)
Q Consensus        79 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~---------~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP  137 (190)
                      +......+++           ..+.+...+....+.         ...+..||+||+|| .+||+++.+|+++  +||||
T Consensus        77 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll--lLDEP  154 (237)
T 2cbz_A           77 IQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY--LFDDP  154 (237)
T ss_dssp             CCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE--EEEST
T ss_pred             CCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE--EEeCc
Confidence            0000111111           111111111111111         22367899999999 6999999999999  99999


Q ss_pred             chhhhhcChHHHHHHHH
Q 029613          138 LELCEARDPKGLYKLAR  154 (190)
Q Consensus       138 ~~~ld~~~~~~~~~~~~  154 (190)
                      |++||+..++.+++.+.
T Consensus       155 ts~LD~~~~~~i~~~l~  171 (237)
T 2cbz_A          155 LSAVDAHVGKHIFENVI  171 (237)
T ss_dssp             TTTSCHHHHHHHHHHTT
T ss_pred             ccccCHHHHHHHHHHHH
Confidence            99999999999998885

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.97  E-value=2.7e-31  Score=214.75  Aligned_cols=149  Identities=18%  Similarity=0.188  Sum_probs=112.8

Q ss_pred             ccccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613            4 VGNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN   76 (190)
Q Consensus         4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~   76 (190)
                      +++++|++++|++   .++++++||++++|++++|+||||||||||+|+|+|++ ++ +|.|.++|.++..    ..+..
T Consensus        17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~-~G~I~i~g~~i~~~~~~~~~~~   94 (260)
T 2ghi_A           17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY-DA-EGDIKIGGKNVNKYNRNSIRSI   94 (260)
T ss_dssp             CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred             eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC-CC-CeEEEECCEEhhhcCHHHHhcc
Confidence            6899999999975   46999999999999999999999999999999999987 55 7999999987632    11222


Q ss_pred             cCCChhh-------HHHHHHH------HHHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCCC
Q 029613           77 LGFSAED-------RTENIRR------VGEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        77 i~~~~~~-------~~~~~~~------~~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~~  127 (190)
                      ++|.+++       ..+++..      -.++...+...++.               ..+..||+||+|| .+||+++.+|
T Consensus        95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p  174 (260)
T 2ghi_A           95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP  174 (260)
T ss_dssp             EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence            3333332       2233211      01112222222221               2356899999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++  +|||||++||+..++.+.+.+++.
T Consensus       175 ~ll--lLDEPts~LD~~~~~~i~~~l~~l  201 (260)
T 2ghi_A          175 KIV--IFDEATSSLDSKTEYLFQKAVEDL  201 (260)
T ss_dssp             SEE--EEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CEE--EEECccccCCHHHHHHHHHHHHHh
Confidence            999  999999999999999999988764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.96  E-value=3.8e-31  Score=224.66  Aligned_cols=149  Identities=18%  Similarity=0.177  Sum_probs=115.4

Q ss_pred             ccccCcceecc--CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            4 VGNSTNIFWQE--SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~--~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      .|+++|++++|  ++..+++++||++++||+++|+||||||||||+|+|+|++ + .+|.|.++|.++..    ..+..+
T Consensus        19 ~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~-~~G~I~i~G~~i~~~~~~~~rr~i   96 (390)
T 3gd7_A           19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-N-TEGEIQIDGVSWDSITLEQWRKAF   96 (390)
T ss_dssp             CEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS-E-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred             eEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC-C-CCeEEEECCEECCcCChHHHhCCE
Confidence            58999999999  6678999999999999999999999999999999999977 5 78999999987643    112233


Q ss_pred             CCChhh-------HHHHHHH-----HHHHHHHHHHcCcce----eecc-----------cCccHHHH-HHHHHhCCCCCe
Q 029613           78 GFSAED-------RTENIRR-----VGEVAKLFADAGLIC----IASL-----------ISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        78 ~~~~~~-------~~~~~~~-----~~~~~~~~~~~~~~~----~~~~-----------lS~g~kqr-~iarall~~~~i  129 (190)
                      +|.+|+       ..+++..     -..+...+...++..    .+..           |||||+|| ++|||++.+|++
T Consensus        97 g~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l  176 (390)
T 3gd7_A           97 GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI  176 (390)
T ss_dssp             EEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             EEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE
Confidence            443332       2333210     012233344444432    2334           99999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +  +|||||++||+..++.+.+.+++.
T Consensus       177 L--LLDEPts~LD~~~~~~l~~~l~~~  201 (390)
T 3gd7_A          177 L--LLDEPSAHLDPVTYQIIRRTLKQA  201 (390)
T ss_dssp             E--EEESHHHHSCHHHHHHHHHHHHTT
T ss_pred             E--EEeCCccCCCHHHHHHHHHHHHHH
Confidence            9  999999999999999999999864

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.95  E-value=2.5e-29  Score=223.44  Aligned_cols=150  Identities=18%  Similarity=0.229  Sum_probs=116.2

Q ss_pred             ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      +++++|++++|++  .++++++||++++|++++|+||||||||||+++|+|++ +|.+|.|.++|.++..    ..+..+
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~~~~~~~~~~~~~i  419 (582)
T 3b5x_A          341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY-DVDSGSICLDGHDVRDYKLTNLRRHF  419 (582)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCEEEECCEEhhhCCHHHHhcCe
Confidence            5889999999974  67999999999999999999999999999999999977 7889999999987642    223344


Q ss_pred             CCChhh-------HHHHHHHH-------HHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCCC
Q 029613           78 GFSAED-------RTENIRRV-------GEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        78 ~~~~~~-------~~~~~~~~-------~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~~  127 (190)
                      ++.+|+       ..+++...       .++...+...++.               ..+..|||||||| ++|||++.+|
T Consensus       420 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p  499 (582)
T 3b5x_A          420 ALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDA  499 (582)
T ss_pred             EEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCC
Confidence            554443       22322210       1122222222221               1246799999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++  +|||||++||+...+.+.+.+++.
T Consensus       500 ~il--llDEpts~LD~~~~~~i~~~l~~~  526 (582)
T 3b5x_A          500 PVL--ILDEATSALDTESERAIQAALDEL  526 (582)
T ss_pred             CEE--EEECccccCCHHHHHHHHHHHHHH
Confidence            999  999999999999999999988864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.95  E-value=2.5e-29  Score=223.44  Aligned_cols=150  Identities=20%  Similarity=0.240  Sum_probs=114.7

Q ss_pred             ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      +++++|++++|++  .++++++||++++|++++|+||||||||||+++|+|++ +|.+|.|.++|.++..    ..+..+
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~p~~G~i~~~g~~~~~~~~~~~~~~i  419 (582)
T 3b60_A          341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-DIDEGHILMDGHDLREYTLASLRNQV  419 (582)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-CCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred             cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc-CCCCCeEEECCEEccccCHHHHHhhC
Confidence            5889999999974  67999999999999999999999999999999999977 7899999999987642    122233


Q ss_pred             CCChhh-------HHHHHHHH-------HHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCCC
Q 029613           78 GFSAED-------RTENIRRV-------GEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        78 ~~~~~~-------~~~~~~~~-------~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~~  127 (190)
                      +|.+|+       ..+++...       .++...+...++.               ..+..|||||||| ++||+++.+|
T Consensus       420 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p  499 (582)
T 3b60_A          420 ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS  499 (582)
T ss_dssp             EEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC
T ss_pred             eEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence            333332       22333210       1122222222221               1246799999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++  +|||||++||+...+.+.+.+++.
T Consensus       500 ~il--llDEpts~LD~~~~~~i~~~l~~~  526 (582)
T 3b60_A          500 PIL--ILDEATSALDTESERAIQAALDEL  526 (582)
T ss_dssp             SEE--EEETTTSSCCHHHHHHHHHHHHHH
T ss_pred             CEE--EEECccccCCHHHHHHHHHHHHHH
Confidence            999  999999999999999999888764

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.95  E-value=6e-29  Score=221.27  Aligned_cols=150  Identities=17%  Similarity=0.164  Sum_probs=114.2

Q ss_pred             ccccCcceeccC--ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            4 VGNSTNIFWQES--PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      .++++|++++|+  ..++++++||++++||+++|+||||||||||+++|+|++ ++.+|+|.++|.++..    .++..+
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~-~~~~G~i~i~g~~i~~~~~~~~r~~i  419 (587)
T 3qf4_A          341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI-DPERGRVEVDELDVRTVKLKDLRGHI  419 (587)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS-CCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred             cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCcEEEECCEEcccCCHHHHHhhe
Confidence            478999999994  467999999999999999999999999999999999977 7899999999988753    122333


Q ss_pred             CCChhh-------HHHHHHH---------HHH------HHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613           78 GFSAED-------RTENIRR---------VGE------VAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        78 ~~~~~~-------~~~~~~~---------~~~------~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      +|.+|+       ..+++..         +.+      +...+...  ++.    ..+..|||||||| .+|||++.+|+
T Consensus       420 ~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~  499 (587)
T 3qf4_A          420 SAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK  499 (587)
T ss_dssp             EEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCS
T ss_pred             EEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCC
Confidence            443332       2222210         111      11112111  222    2256799999999 69999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++  +|||||++||+...+.+.+.+++.
T Consensus       500 il--llDEpts~LD~~~~~~i~~~l~~~  525 (587)
T 3qf4_A          500 VL--ILDDCTSSVDPITEKRILDGLKRY  525 (587)
T ss_dssp             EE--EEESCCTTSCHHHHHHHHHHHHHH
T ss_pred             EE--EEECCcccCCHHHHHHHHHHHHHh
Confidence            99  999999999999999999988763

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.95  E-value=7.7e-29  Score=220.20  Aligned_cols=150  Identities=21%  Similarity=0.220  Sum_probs=113.1

Q ss_pred             ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      .++++|++++|++  .++++|+||++++|++++|+||||||||||+++|+|++ +|.+|+|.++|.++..    ..+..+
T Consensus       339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~~~~~~~~~~r~~i  417 (578)
T 4a82_A          339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-DVTSGQILIDGHNIKDFLTGSLRNQI  417 (578)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-CCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred             eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHhhhe
Confidence            3789999999964  57999999999999999999999999999999999977 7899999999987643    122334


Q ss_pred             CCChhh-------HHHHHHH------HHHHHHHHHHc-----------Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613           78 GFSAED-------RTENIRR------VGEVAKLFADA-----------GLI----CIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        78 ~~~~~~-------~~~~~~~------~~~~~~~~~~~-----------~~~----~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      +|.+|+       ..+++..      -.++.+.....           +..    ..+..+||||||| ++|||++.+|+
T Consensus       418 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~  497 (578)
T 4a82_A          418 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP  497 (578)
T ss_dssp             EEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred             EEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence            444332       2233211      01111111111           111    1245799999999 69999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++  +|||||++||+...+.+.+.+++.
T Consensus       498 il--llDEpts~LD~~~~~~i~~~l~~~  523 (578)
T 4a82_A          498 IL--ILDEATSALDLESESIIQEALDVL  523 (578)
T ss_dssp             EE--EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             EE--EEECccccCCHHHHHHHHHHHHHH
Confidence            99  999999999999988888888653

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.94  E-value=9.5e-29  Score=220.39  Aligned_cols=149  Identities=16%  Similarity=0.188  Sum_probs=113.3

Q ss_pred             cccCcceeccCc-cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCC
Q 029613            5 GNSTNIFWQESP-IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~~-~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~   79 (190)
                      ++++|++++|++ .++++|+||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..    .++..+++
T Consensus       355 i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~i~~~~~~~~r~~i~~  433 (598)
T 3qf4_B          355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY-DVDRGQILVDGIDIRKIKRSSLRSSIGI  433 (598)
T ss_dssp             EEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS-CCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred             EEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc-CCCCeEEEECCEEhhhCCHHHHHhceEE
Confidence            789999999964 67999999999999999999999999999999999977 8899999999988753    12233444


Q ss_pred             Chhh-------HHHHHHHH------HHHHHHHHHcCc-----------c----eeecccCccHHHH-HHHHHhCCCCCeE
Q 029613           80 SAED-------RTENIRRV------GEVAKLFADAGL-----------I----CIASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        80 ~~~~-------~~~~~~~~------~~~~~~~~~~~~-----------~----~~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      .+|+       ..+++..-      .++.......++           .    .....+||||||| ++|||++.+|+++
T Consensus       434 v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~il  513 (598)
T 3qf4_B          434 VLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKIL  513 (598)
T ss_dssp             ECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEE
T ss_pred             EeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            4433       23333210      011111111111           1    1135799999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                        +|||||++||+...+.+.+.+++.
T Consensus       514 --llDEpts~LD~~~~~~i~~~l~~~  537 (598)
T 3qf4_B          514 --ILDEATSNVDTKTEKSIQAAMWKL  537 (598)
T ss_dssp             --EECCCCTTCCHHHHHHHHHHHHHH
T ss_pred             --EEECCccCCCHHHHHHHHHHHHHH
Confidence              999999999999999998888763

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.94  E-value=6.5e-28  Score=197.72  Aligned_cols=143  Identities=16%  Similarity=0.170  Sum_probs=92.8

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED   83 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~   83 (190)
                      +++++|+++.+  .++++++||++++|++++|+||||||||||+|+|+|++ ++.+|.|.++|.- .. +.+...+.+..
T Consensus        40 ~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~i-~~-v~Q~~~l~~~t  114 (290)
T 2bbs_A           40 SLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSGRI-SF-CSQNSWIMPGT  114 (290)
T ss_dssp             ----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS-CEEEEEEECCSCE-EE-ECSSCCCCSSB
T ss_pred             eEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEE-EE-EeCCCccCccc
Confidence            58899999863  67999999999999999999999999999999999977 7789999998741 10 00000000001


Q ss_pred             HHHHHH-------HHHH------HHHHHHHcCc------ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhh
Q 029613           84 RTENIR-------RVGE------VAKLFADAGL------ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEA  143 (190)
Q Consensus        84 ~~~~~~-------~~~~------~~~~~~~~~~------~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~  143 (190)
                      ..+++.       ....      +...+.....      ...+..||+||+|| .+||+++.+|+++  +|||||++||+
T Consensus       115 v~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ll--lLDEPts~LD~  192 (290)
T 2bbs_A          115 IKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY--LLDSPFGYLDV  192 (290)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEE--EEESTTTTCCH
T ss_pred             HHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEE--EEECCcccCCH
Confidence            122211       0001      1111111111      11246899999999 6999999999999  99999999999


Q ss_pred             cChHHHHHHH
Q 029613          144 RDPKGLYKLA  153 (190)
Q Consensus       144 ~~~~~~~~~~  153 (190)
                      ..++.+++.+
T Consensus       193 ~~~~~i~~~l  202 (290)
T 2bbs_A          193 LTEKEIFESC  202 (290)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9999999864

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.93  E-value=6.6e-27  Score=223.67  Aligned_cols=154  Identities=17%  Similarity=0.200  Sum_probs=117.0

Q ss_pred             cccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            5 GNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         5 l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      |+++|++++|++   .++|+|+||++++||.++|+|+||||||||+++|.|++ +|.+|.|.+||.++..    .++..+
T Consensus      1077 I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A         1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY-DTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp             EEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS-CCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred             EEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc-cCCCCEEEECCEEhhhCCHHHHHhhe
Confidence            789999999954   46999999999999999999999999999999999977 8899999999988753    234444


Q ss_pred             CCChhh-------HHHHHHH--------HHHHHHHHHHc-----------Cccee----ecccCccHHHH-HHHHHhCCC
Q 029613           78 GFSAED-------RTENIRR--------VGEVAKLFADA-----------GLICI----ASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        78 ~~~~~~-------~~~~~~~--------~~~~~~~~~~~-----------~~~~~----~~~lS~g~kqr-~iarall~~  126 (190)
                      ++.+|+       .++|+..        -.++.+.+...           |+...    ...||+||||| ++|||++++
T Consensus      1156 ~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~ 1235 (1321)
T 4f4c_A         1156 AIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRN 1235 (1321)
T ss_dssp             EEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSC
T ss_pred             EEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhC
Confidence            444443       2333210        01122222222           22111    45699999999 799999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                      |+++  +||||||+||....+.+.+.+++ ..++.|
T Consensus      1236 ~~IL--iLDEaTSaLD~~tE~~Iq~~l~~-~~~~~T 1268 (1321)
T 4f4c_A         1236 PKIL--LLDEATSALDTESEKVVQEALDR-AREGRT 1268 (1321)
T ss_dssp             CSEE--EEESCCCSTTSHHHHHHHHHHTT-TSSSSE
T ss_pred             CCEE--EEeCccccCCHHHHHHHHHHHHH-HcCCCE
Confidence            9999  99999999999998889888875 445555

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.93  E-value=3.1e-26  Score=201.78  Aligned_cols=148  Identities=12%  Similarity=0.061  Sum_probs=108.6

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED   83 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~   83 (190)
                      +++++++++.|++. .++..||++++||+++|+||||||||||+|+|+|++ ++.+|.|.+++..+..............
T Consensus       269 ~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~i~~~~q~~~~~~~~t  346 (538)
T 3ozx_A          269 KMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI-TADEGSVTPEKQILSYKPQRIFPNYDGT  346 (538)
T ss_dssp             EEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSBCCEESSCCCEEEECSSCCCCCSSB
T ss_pred             eEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCeeeEeechhcccccCCC
Confidence            57788999999864 577789999999999999999999999999999977 7889999888766532110000000011


Q ss_pred             HHHHHHHH---------HHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHH
Q 029613           84 RTENIRRV---------GEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGL  149 (190)
Q Consensus        84 ~~~~~~~~---------~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~  149 (190)
                      ..+++...         .....++...++.    ..+..|||||+|| .|||+++.+|+++  +|||||++||...+..+
T Consensus       347 v~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lL--lLDEPT~gLD~~~~~~i  424 (538)
T 3ozx_A          347 VQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLY--VLDQPSSYLDVEERYIV  424 (538)
T ss_dssp             HHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEE--EEESTTTTCCHHHHHHH
T ss_pred             HHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE--EEeCCccCCCHHHHHHH
Confidence            11222111         0112233334443    3478899999999 6999999999999  99999999999999999


Q ss_pred             HHHHHc
Q 029613          150 YKLARA  155 (190)
Q Consensus       150 ~~~~~~  155 (190)
                      ++.+++
T Consensus       425 ~~~l~~  430 (538)
T 3ozx_A          425 AKAIKR  430 (538)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888875

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.93  E-value=4.4e-26  Score=218.05  Aligned_cols=177  Identities=19%  Similarity=0.160  Sum_probs=127.0

Q ss_pred             cccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            5 GNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         5 l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      ++++|++++|++   .++|+|+||++++|+.++|+||||||||||+++|.|.+ ++.+|.|.+||.++..    .++..+
T Consensus       416 I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~-~~~~G~I~idG~~i~~~~~~~lr~~i  494 (1321)
T 4f4c_A          416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY-DVLKGKITIDGVDVRDINLEFLRKNV  494 (1321)
T ss_dssp             EEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS-CCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred             EEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc-ccccCcccCCCccchhccHHHHhhcc
Confidence            789999999963   57999999999999999999999999999999999977 8899999999987653    233444


Q ss_pred             CCChhh-------HHHHHH---------HHHHHH------HHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613           78 GFSAED-------RTENIR---------RVGEVA------KLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        78 ~~~~~~-------~~~~~~---------~~~~~~------~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      +|.+|+       .++|+.         .+.+.+      ..+..+  |..    +-...|||||||| ++|||++.+|+
T Consensus       495 ~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~  574 (1321)
T 4f4c_A          495 AVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPK  574 (1321)
T ss_dssp             EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCS
T ss_pred             cccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCC
Confidence            555443       223321         111111      112211  221    1246799999999 79999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc--cccccccCCCCCCceEEecCCccc
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL--SIFSFCYYEKLIPRTCKKKISATT  186 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~p~~~~~~~~~~~  186 (190)
                      ++  +||||||+||.+..+.+.+.+++ ..+|.|  -+.+. ...-.+.|.++--.++-+
T Consensus       575 Il--iLDE~tSaLD~~te~~i~~~l~~-~~~~~T~iiiaHr-ls~i~~aD~Iivl~~G~i  630 (1321)
T 4f4c_A          575 IL--LLDEATSALDAESEGIVQQALDK-AAKGRTTIIIAHR-LSTIRNADLIISCKNGQV  630 (1321)
T ss_dssp             EE--EEESTTTTSCTTTHHHHHHHHHH-HHTTSEEEEECSC-TTTTTTCSEEEEEETTEE
T ss_pred             EE--EEecccccCCHHHHHHHHHHHHH-HhCCCEEEEEccc-HHHHHhCCEEEEeeCCee
Confidence            99  99999999999987777777764 223444  45555 555566665544344433

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.92  E-value=1.7e-24  Score=167.75  Aligned_cols=175  Identities=67%  Similarity=1.138  Sum_probs=145.1

Q ss_pred             CcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHH
Q 029613            8 TNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTEN   87 (190)
Q Consensus         8 ~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~   87 (190)
                      +|++|.++...+.+++++..++|++++|+|+|||||||++++|++.+...|...++++++++...+...+++.+++..++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~   82 (200)
T 3uie_A            3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAEN   82 (200)
T ss_dssp             -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHH
T ss_pred             CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHHHHH
Confidence            68899999999999999999999999999999999999999999988544444459999988766666678888887777


Q ss_pred             HHHHHHHHHHHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCccccccc
Q 029613           88 IRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSF  167 (190)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~  167 (190)
                      +..+..+...+...+...++...++....|..+++++....++.|+||.|...+-.|..+++++..+.+++..+.+++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~~~~~~~  162 (200)
T 3uie_A           83 IRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDP  162 (200)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSCBTTTBC
T ss_pred             HHHHHHHHHHHHhCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCCCCCCCc
Confidence            77777777777777777777778888888888899998878877799999999999999999999999999999999999


Q ss_pred             ccCCCCCCceEEecCC
Q 029613          168 CYYEKLIPRTCKKKIS  183 (190)
Q Consensus       168 ~~~~p~~p~~~~~~~~  183 (190)
                       |++|..|++++|--+
T Consensus       163 -~~~~~~~~~~idt~~  177 (200)
T 3uie_A          163 -YEPPLNCEISLGREG  177 (200)
T ss_dssp             -CCCCSSCSEEECCSS
T ss_pred             -CcCCCCCCEEEecCC
Confidence             999999999998643

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.92  E-value=5.2e-26  Score=200.45  Aligned_cols=145  Identities=19%  Similarity=0.177  Sum_probs=105.0

Q ss_pred             CcceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEE---------EEcCcccccc-----
Q 029613            8 TNIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSY---------ILDGDNLRHG-----   72 (190)
Q Consensus         8 ~~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i---------~~~g~~~~~~-----   72 (190)
                      +|++++|++. .+++++| ++++||+++|+||||||||||+|+|+|++ +|.+|.+         .++|.++...     
T Consensus        25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~-~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~  102 (538)
T 1yqt_A           25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQL-IPNLCGDNDSWDGVIRAFRGNELQNYFEKLK  102 (538)
T ss_dssp             CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS-CCCTTTTCCSHHHHHHHTTTSTHHHHHHHHH
T ss_pred             cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCccCcchhhhHHhhCCccHHHHHHHHH
Confidence            6899999876 4899999 99999999999999999999999999977 6667764         3455443210     


Q ss_pred             -cccccCCC-------hh----hHHHHHHHH---HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613           73 -LNKNLGFS-------AE----DRTENIRRV---GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEV  132 (190)
Q Consensus        73 -~~~~i~~~-------~~----~~~~~~~~~---~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~v  132 (190)
                       ....+++.       +.    ...+++...   ..+..++..+++..    .+..||+||+|| +|||+++.+|+++  
T Consensus       103 ~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lL--  180 (538)
T 1yqt_A          103 NGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFY--  180 (538)
T ss_dssp             TTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEE--
T ss_pred             HHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEE--
Confidence             00011110       00    112222110   12334555555532    477899999999 6999999999999  


Q ss_pred             EeeCCchhhhhcChHHHHHHHHcC
Q 029613          133 FMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       133 llDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +|||||++||+..++.+.+.+++.
T Consensus       181 lLDEPTs~LD~~~~~~l~~~L~~l  204 (538)
T 1yqt_A          181 FFDEPSSYLDIRQRLNAARAIRRL  204 (538)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             EEECCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999988888763

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.92  E-value=2.3e-26  Score=205.05  Aligned_cols=145  Identities=19%  Similarity=0.201  Sum_probs=105.4

Q ss_pred             CcceeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEE---------EEcCcccccc----c
Q 029613            8 TNIFWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSY---------ILDGDNLRHG----L   73 (190)
Q Consensus         8 ~~l~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i---------~~~g~~~~~~----~   73 (190)
                      +|++++|++. .+++++| ++++|++++|+||||||||||+|+|+|++ .|.+|.+         .++|.++...    .
T Consensus        95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll-~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~  172 (607)
T 3bk7_A           95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL-IPNLCEDNDSWDNVIRAFRGNELQNYFERLK  172 (607)
T ss_dssp             GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS-CCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred             CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC-CCCCCccccccchhhheeCCEehhhhhhhhh
Confidence            8999999876 4899999 99999999999999999999999999987 6777764         3455543210    0


Q ss_pred             --ccccCCChh-----------hHHHHHHHH---HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613           74 --NKNLGFSAE-----------DRTENIRRV---GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEV  132 (190)
Q Consensus        74 --~~~i~~~~~-----------~~~~~~~~~---~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~v  132 (190)
                        ...+++..+           ...+++...   ..+..++..+++..    .+..||+||+|| +|||+++.+|+++  
T Consensus       173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lL--  250 (607)
T 3bk7_A          173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFY--  250 (607)
T ss_dssp             HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEE--
T ss_pred             hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEE--
Confidence              000111000           112222110   12334555555532    377899999999 6999999999999  


Q ss_pred             EeeCCchhhhhcChHHHHHHHHcC
Q 029613          133 FMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       133 llDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +|||||++||+..+..+.+.+++.
T Consensus       251 lLDEPTs~LD~~~~~~l~~~L~~l  274 (607)
T 3bk7_A          251 FFDEPSSYLDIRQRLKVARVIRRL  274 (607)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             EEECCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999888888763

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.92  E-value=4.7e-26  Score=217.36  Aligned_cols=148  Identities=19%  Similarity=0.221  Sum_probs=111.3

Q ss_pred             cccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            5 GNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         5 l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      ++++|++++|++   .++|+|+||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|.++..    .++..+
T Consensus       388 i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~-~~~~G~i~i~g~~i~~~~~~~~r~~i  466 (1284)
T 3g5u_A          388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY-DPLDGMVSIDGQDIRTINVRYLREII  466 (1284)
T ss_dssp             EEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS-CCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred             EEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEHHhCCHHHHHhhe
Confidence            688999999964   46999999999999999999999999999999999977 7899999999987643    122334


Q ss_pred             CCChhh-------HHHHHHHH------HHHH---------HHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613           78 GFSAED-------RTENIRRV------GEVA---------KLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        78 ~~~~~~-------~~~~~~~~------~~~~---------~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      ++.+|+       ..+++..-      .++.         ..+...  +..    ..+..|||||||| ++|||++.+|+
T Consensus       467 ~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~  546 (1284)
T 3g5u_A          467 GVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK  546 (1284)
T ss_dssp             EEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred             EEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCC
Confidence            444433       23333211      1111         111111  111    2256799999999 69999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      ++  +|||||++||+...+.+.+.+++
T Consensus       547 il--iLDEpts~LD~~~~~~i~~~l~~  571 (1284)
T 3g5u_A          547 IL--LLDEATSALDTESEAVVQAALDK  571 (1284)
T ss_dssp             EE--EEESTTCSSCHHHHHHHHHHHHH
T ss_pred             EE--EEECCCCCCCHHHHHHHHHHHHH
Confidence            99  99999999999988777777654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.92  E-value=1.6e-25  Score=199.69  Aligned_cols=147  Identities=15%  Similarity=0.122  Sum_probs=106.6

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFS   80 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~   80 (190)
                      +++++|+++.|++. .++.+||++++||+++|+||||||||||+|+|+|++ ++.+|.|.+.. .+..   .......++
T Consensus       357 ~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~~-~i~~v~Q~~~~~~~~t  433 (607)
T 3bk7_A          357 LVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE-EPTEGKVEWDL-TVAYKPQYIKAEYEGT  433 (607)
T ss_dssp             EEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS-CCSBSCCCCCC-CEEEECSSCCCCCSSB
T ss_pred             EEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEEee-EEEEEecCccCCCCCc
Confidence            68899999999865 689999999999999999999999999999999977 77788776521 1110   000001112


Q ss_pred             hhhHHHHH--HHH---HHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHH
Q 029613           81 AEDRTENI--RRV---GEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLY  150 (190)
Q Consensus        81 ~~~~~~~~--~~~---~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~  150 (190)
                      ..+.....  ...   ..+..++...++.    ..+..|||||+|| .+||+++.+|+++  +|||||++||...+..++
T Consensus       434 v~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lL--lLDEPt~~LD~~~~~~l~  511 (607)
T 3bk7_A          434 VYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIY--LLDEPSAYLDVEQRLAVS  511 (607)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEE--EEECTTTTCCHHHHHHHH
T ss_pred             HHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEE--EEeCCccCCCHHHHHHHH
Confidence            22211111  000   1123344444443    2377899999999 6999999999999  999999999999999999


Q ss_pred             HHHHc
Q 029613          151 KLARA  155 (190)
Q Consensus       151 ~~~~~  155 (190)
                      +.+++
T Consensus       512 ~~l~~  516 (607)
T 3bk7_A          512 RAIRH  516 (607)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88875

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.92  E-value=4.4e-26  Score=217.52  Aligned_cols=148  Identities=19%  Similarity=0.244  Sum_probs=112.4

Q ss_pred             cccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----cccccc
Q 029613            5 GNSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNL   77 (190)
Q Consensus         5 l~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i   77 (190)
                      ++++|++++|++   .++++++||++++||+++|+||||||||||+++|+|++ ++.+|.|.++|.++..    .++..+
T Consensus      1031 i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~-~p~~G~I~i~g~~i~~~~~~~~r~~i 1109 (1284)
T 3g5u_A         1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY-DPMAGSVFLDGKEIKQLNVQWLRAQL 1109 (1284)
T ss_dssp             EEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS-CCSEEEEESSSSCTTSSCHHHHTTSC
T ss_pred             EEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEEcccCCHHHHHhce
Confidence            688999999974   36999999999999999999999999999999999977 8899999999988643    223334


Q ss_pred             CCChhh-------HHHHHH-----------HHHHH------HHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCC
Q 029613           78 GFSAED-------RTENIR-----------RVGEV------AKLFADA--GLI----CIASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        78 ~~~~~~-------~~~~~~-----------~~~~~------~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~  126 (190)
                      ++.+|+       ..+++.           .+.+.      .......  ++.    +.+..|||||||| ++||+++.+
T Consensus      1110 ~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~ 1189 (1284)
T 3g5u_A         1110 GIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189 (1284)
T ss_dssp             EEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred             EEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcC
Confidence            444443       222221           01111      1111111  111    1245799999999 699999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      |+++  +|||||++||....+.+++.+++
T Consensus      1190 p~iL--iLDEpTs~lD~~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A         1190 PHIL--LLDEATSALDTESEKVVQEALDK 1216 (1284)
T ss_dssp             CSSE--EEESCSSSCCHHHHHHHHHHHHH
T ss_pred             CCEE--EEeCCcccCCHHHHHHHHHHHHH
Confidence            9999  99999999999999999988876

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.92  E-value=1.8e-25  Score=197.02  Aligned_cols=147  Identities=16%  Similarity=0.132  Sum_probs=105.7

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFS   80 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~   80 (190)
                      +++++|+++.|++. .++.+||++++||+++|+||||||||||+|+|+|++ ++.+|.|.+.. .+..   ........+
T Consensus       287 ~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~-~p~~G~i~~~~-~i~~v~Q~~~~~~~~t  363 (538)
T 1yqt_A          287 LVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVE-EPTEGKIEWDL-TVAYKPQYIKADYEGT  363 (538)
T ss_dssp             EEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS-CCSBCCCCCCC-CEEEECSSCCCCCSSB
T ss_pred             EEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECc-eEEEEecCCcCCCCCc
Confidence            67899999999765 689999999999999999999999999999999977 77788776521 1110   000001112


Q ss_pred             hhhHHHHH--HHH---HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHH
Q 029613           81 AEDRTENI--RRV---GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLY  150 (190)
Q Consensus        81 ~~~~~~~~--~~~---~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~  150 (190)
                      ..+.....  ...   ..+..++..+++..    .+..|||||+|| .+||+++.+|+++  +|||||++||...+..++
T Consensus       364 v~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lL--lLDEPt~~LD~~~~~~i~  441 (538)
T 1yqt_A          364 VYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIY--LLDEPSAYLDVEQRLAVS  441 (538)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEE--EEECTTTTCCHHHHHHHH
T ss_pred             HHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEE--EEeCCcccCCHHHHHHHH
Confidence            21111111  000   11223344444432    377899999999 5999999999999  999999999999999999


Q ss_pred             HHHHc
Q 029613          151 KLARA  155 (190)
Q Consensus       151 ~~~~~  155 (190)
                      +.+++
T Consensus       442 ~~l~~  446 (538)
T 1yqt_A          442 RAIRH  446 (538)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88875

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.91  E-value=5.5e-25  Score=203.63  Aligned_cols=62  Identities=19%  Similarity=0.146  Sum_probs=57.6

Q ss_pred             ccccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613            4 VGNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG   66 (190)
Q Consensus         4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g   66 (190)
                      |++++|++++|++  +++++++||++.+|++++|+||||||||||+|+|+|++ .+.+|.|.+++
T Consensus       671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll-~P~sG~I~~~~  734 (986)
T 2iw3_A          671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL-LPTSGEVYTHE  734 (986)
T ss_dssp             EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS-CCSEEEEEECT
T ss_pred             eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEEcC
Confidence            7899999999965  67999999999999999999999999999999999977 78899999875

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.90  E-value=3.1e-24  Score=191.24  Aligned_cols=149  Identities=14%  Similarity=0.154  Sum_probs=102.5

Q ss_pred             CcceeccCccc-cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEE-----------EEcCcccccc---
Q 029613            8 TNIFWQESPIG-RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSY-----------ILDGDNLRHG---   72 (190)
Q Consensus         8 ~~l~~~~~~~~-~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i-----------~~~g~~~~~~---   72 (190)
                      ++++++|+... .+++++ .+++|++++|+||||||||||+|+|+|++ +|.+|.|           ++.|..+...   
T Consensus        81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll-~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~  158 (608)
T 3j16_B           81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQ-KPNLGRFDDPPEWQEIIKYFRGSELQNYFTK  158 (608)
T ss_dssp             TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS-CCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred             CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCC-CCCCceEecccchhhhhheecChhhhhhhhH
Confidence            46888897653 566666 68999999999999999999999999977 7778876           2333332110   


Q ss_pred             -ccccc------CCChh----------hHHHHHHH-----HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCC
Q 029613           73 -LNKNL------GFSAE----------DRTENIRR-----VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLP  125 (190)
Q Consensus        73 -~~~~i------~~~~~----------~~~~~~~~-----~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~  125 (190)
                       ....+      .+...          ...+.+..     -..+..++..+++..    .+..||+||+|| +|||+++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~  238 (608)
T 3j16_B          159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ  238 (608)
T ss_dssp             HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred             HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh
Confidence             00000      00000          01111100     012334444555432    378899999999 69999999


Q ss_pred             CCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          126 DSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       126 ~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      +|+++  +|||||++||+..+..+.+.+++....|
T Consensus       239 ~p~ll--llDEPts~LD~~~~~~l~~~l~~l~~~g  271 (608)
T 3j16_B          239 EADVY--MFDEPSSYLDVKQRLNAAQIIRSLLAPT  271 (608)
T ss_dssp             CCSEE--EEECTTTTCCHHHHHHHHHHHHGGGTTT
T ss_pred             CCCEE--EEECcccCCCHHHHHHHHHHHHHHHhCC
Confidence            99999  9999999999999999999998754444

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.89  E-value=6.7e-24  Score=191.30  Aligned_cols=139  Identities=20%  Similarity=0.205  Sum_probs=87.5

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHH---------------------HHHHHHHhhCC-------CcEEEEcCc
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLA---------------------FSVNKELYSRG-------KLSYILDGD   67 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLl---------------------r~l~g~l~~~~-------~g~i~~~g~   67 (190)
                      ...+|+++||++++|++++|+||||||||||+                     +++.++. .++       .+.+.+++.
T Consensus        30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~-~~~~~~i~~~~~~i~~~~~  108 (670)
T 3ux8_A           30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQME-KPDVDAIEGLSPAISIDQK  108 (670)
T ss_dssp             CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC---------------CCCSEEESCCCEEEESSC
T ss_pred             CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccc-cCCccceeccccceEecCc
Confidence            46789999999999999999999999999998                     7777765 555       344556554


Q ss_pred             ccccccccccCCChh---------------------------hHHHHHHH--------------------HHHHHHHHHH
Q 029613           68 NLRHGLNKNLGFSAE---------------------------DRTENIRR--------------------VGEVAKLFAD  100 (190)
Q Consensus        68 ~~~~~~~~~i~~~~~---------------------------~~~~~~~~--------------------~~~~~~~~~~  100 (190)
                      +........+++..+                           ...+++..                    +.....++..
T Consensus       109 ~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  188 (670)
T 3ux8_A          109 TTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN  188 (670)
T ss_dssp             C-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred             hhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence            432111100000000                           00011000                    0011122444


Q ss_pred             cCcc-----eeecccCccHHHH-HHHHHhCCCCC--eEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          101 AGLI-----CIASLISPYRKDR-DACRAMLPDSN--FIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       101 ~~~~-----~~~~~lS~g~kqr-~iarall~~~~--il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      .++.     ..+..||+||+|| +||||++.+|+  ++  +|||||++||+..++.+.+.+++.+
T Consensus       189 ~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lL--lLDEPtsgLD~~~~~~l~~~l~~l~  251 (670)
T 3ux8_A          189 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY--VLDEPSIGLHQRDNDRLIATLKSMR  251 (670)
T ss_dssp             TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEE--EEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred             cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEE--EEECCccCCCHHHHHHHHHHHHHHH
Confidence            4442     3478899999999 69999999988  99  9999999999999999998887643

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.88  E-value=3.4e-23  Score=184.60  Aligned_cols=143  Identities=11%  Similarity=0.032  Sum_probs=96.8

Q ss_pred             CcceeccCc-cccccccccccCCc-----cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCC-
Q 029613            8 TNIFWQESP-IGRLERQKLLNQKG-----CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFS-   80 (190)
Q Consensus         8 ~~l~~~~~~-~~~l~~~sl~i~~G-----eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~-   80 (190)
                      ++++++|+. ..+++++||++.+|     |+++|+||||||||||+|+|+|++ ++.+|.. +....+.. ..+..... 
T Consensus       350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~-~p~~G~~-~~~~~i~~-~~q~~~~~~  426 (608)
T 3j16_B          350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL-KPDEGQD-IPKLNVSM-KPQKIAPKF  426 (608)
T ss_dssp             SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS-CCSBCCC-CCSCCEEE-ECSSCCCCC
T ss_pred             cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC-CCCCCcC-ccCCcEEE-ecccccccC
Confidence            567778865 46899999999998     789999999999999999999977 6666642 11111100 00000000 


Q ss_pred             hhhHHHHHHH--------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChH
Q 029613           81 AEDRTENIRR--------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPK  147 (190)
Q Consensus        81 ~~~~~~~~~~--------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~  147 (190)
                      .....+++..        -.....++...++.    ..+..|||||+|| ++||+++.+|+++  +|||||++||...+.
T Consensus       427 ~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lL--lLDEPT~gLD~~~~~  504 (608)
T 3j16_B          427 PGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIY--LIDEPSAYLDSEQRI  504 (608)
T ss_dssp             CSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEE--EECCTTTTCCHHHHH
T ss_pred             CccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEE--EEECCCCCCCHHHHH
Confidence            0000111100        00112233333432    3478899999999 6999999999999  999999999999999


Q ss_pred             HHHHHHHc
Q 029613          148 GLYKLARA  155 (190)
Q Consensus       148 ~~~~~~~~  155 (190)
                      .+++.+++
T Consensus       505 ~i~~ll~~  512 (608)
T 3j16_B          505 ICSKVIRR  512 (608)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888775

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.88  E-value=2.2e-23  Score=192.89  Aligned_cols=142  Identities=14%  Similarity=0.140  Sum_probs=99.5

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHH-Hh--h-CCC-cEEEEcCcccccccccccCC
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKE-LY--S-RGK-LSYILDGDNLRHGLNKNLGF   79 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~-l~--~-~~~-g~i~~~g~~~~~~~~~~i~~   79 (190)
                      +...|++++|+++.+++++||++.+|++++|+||||||||||+|+|+|- +.  + ... ..+++. .+...      .+
T Consensus       436 L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~-q~~~~------~~  508 (986)
T 2iw3_A          436 LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVE-HDIDG------TH  508 (986)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETT-CCCCC------CC
T ss_pred             eEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEc-ccccc------cc
Confidence            3455899999999999999999999999999999999999999999952 10  0 000 111111 11000      00


Q ss_pred             ChhhHHHHHHH-----HHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHH
Q 029613           80 SAEDRTENIRR-----VGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKG  148 (190)
Q Consensus        80 ~~~~~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~  148 (190)
                      ......+++..     -..+...+...++.     ..+..||+||||| .+||+++.+|+++  +|||||++||+..++.
T Consensus       509 ~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lL--LLDEPTs~LD~~~~~~  586 (986)
T 2iw3_A          509 SDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADIL--LLDEPTNHLDTVNVAW  586 (986)
T ss_dssp             TTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEE--EEESTTTTCCHHHHHH
T ss_pred             cCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE--EEECCccCCCHHHHHH
Confidence            00001111110     12233445555552     2467899999999 6999999999999  9999999999999999


Q ss_pred             HHHHHHc
Q 029613          149 LYKLARA  155 (190)
Q Consensus       149 ~~~~~~~  155 (190)
                      +.+.+++
T Consensus       587 l~~~L~~  593 (986)
T 2iw3_A          587 LVNYLNT  593 (986)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999987

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.87  E-value=4.5e-23  Score=181.63  Aligned_cols=146  Identities=13%  Similarity=0.165  Sum_probs=99.5

Q ss_pred             CcceeccCcccccccccccc-CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEE-----------EEcCcccccc---
Q 029613            8 TNIFWQESPIGRLERQKLLN-QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSY-----------ILDGDNLRHG---   72 (190)
Q Consensus         8 ~~l~~~~~~~~~l~~~sl~i-~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i-----------~~~g~~~~~~---   72 (190)
                      ++...+|+... ++-.++.+ ++|++++|+||||||||||+|+|+|++ .|..|.+           .++|.++...   
T Consensus         3 ~~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~-~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~   80 (538)
T 3ozx_A            3 GEVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEI-IPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE   80 (538)
T ss_dssp             CCEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSS-CCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred             CCCceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence            45778887432 33334444 589999999999999999999999977 7778876           4566544210   


Q ss_pred             -------cccccCCChh-------hHHHHHHHH---HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeE
Q 029613           73 -------LNKNLGFSAE-------DRTENIRRV---GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus        73 -------~~~~i~~~~~-------~~~~~~~~~---~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                             ....+.+...       ...+.+...   .....++..+++..    .+..||+||+|| +||||++.+|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~il  160 (538)
T 3ozx_A           81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVY  160 (538)
T ss_dssp             HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred             HhhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence                   0001111111       011111110   11233444455432    377899999999 6999999999999


Q ss_pred             EEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          131 EVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       131 ~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                        +|||||++||+..+..+++.+++..
T Consensus       161 --llDEPts~LD~~~~~~l~~~l~~l~  185 (538)
T 3ozx_A          161 --IFDQPSSYLDVRERMNMAKAIRELL  185 (538)
T ss_dssp             --EEESTTTTCCHHHHHHHHHHHHHHC
T ss_pred             --EEECCcccCCHHHHHHHHHHHHHHh
Confidence              9999999999999999999988753

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.85  E-value=8.6e-23  Score=154.77  Aligned_cols=101  Identities=20%  Similarity=0.205  Sum_probs=67.4

Q ss_pred             ccccccCCccEEEEECCCCCcHHHHHH------------HHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHH
Q 029613           22 RQKLLNQKGCVVWITGLSGSGKSTLAF------------SVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIR   89 (190)
Q Consensus        22 ~~sl~i~~Geii~L~G~nGsGKSTLlr------------~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~   89 (190)
                      ++||++++|++++|+||||||||||++            .+.|.+ .+..+...+                .....+   
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~-~~~~~~~~~----------------~~~~~~---   60 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLM-SDDENDQTV----------------TGAAFD---   60 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHH-CSSTTCGGG----------------HHHHHH---
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHh-cCcccchhh----------------HHHHHH---
Confidence            589999999999999999999999999            444444 221111000                000111   


Q ss_pred             HHHHHHHHHHHcCcce---eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhc
Q 029613           90 RVGEVAKLFADAGLIC---IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEAR  144 (190)
Q Consensus        90 ~~~~~~~~~~~~~~~~---~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~  144 (190)
                      .+..........+...   .....|++++|| .+||+++.+|+++  +|||||++||++
T Consensus        61 ~~~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~l--llDEPt~~Ld~~  117 (171)
T 4gp7_A           61 VLHYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAV--VFNLPEKVCQER  117 (171)
T ss_dssp             HHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEE--EECCCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEE--EEeCCHHHHHHH
Confidence            1111111122233322   234468999999 6999999999999  999999999998

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.83  E-value=4e-21  Score=173.20  Aligned_cols=53  Identities=15%  Similarity=0.101  Sum_probs=45.5

Q ss_pred             eecccCccHHHH-HHHHHhCCCC---CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          106 IASLISPYRKDR-DACRAMLPDS---NFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       106 ~~~~lS~g~kqr-~iarall~~~---~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      .+..|||||+|| +|||+++.+|   +++  +|||||++||+.....+.+.+++....|
T Consensus       540 ~~~~LSgG~~qrv~iAraL~~~p~~p~ll--llDEPt~~LD~~~~~~i~~~l~~l~~~g  596 (670)
T 3ux8_A          540 PATTLSGGEAQRVKLAAELHRRSNGRTLY--ILDEPTTGLHVDDIARLLDVLHRLVDNG  596 (670)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHSCCCSCEEE--EEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             CchhCCHHHHHHHHHHHHHhhCCCCCcEE--EEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence            478899999999 6999999876   499  9999999999999999998887643334

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.6e-23  Score=181.40  Aligned_cols=137  Identities=12%  Similarity=0.059  Sum_probs=97.4

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCc-E-EEEcCcccccccccccCCC
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL-S-YILDGDNLRHGLNKNLGFS   80 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g-~-i~~~g~~~~~~~~~~i~~~   80 (190)
                      +|++++|++++|+      ++||++++|++++|+||||||||||+|+|+|++ .+.+| . |+++++. .    ..+++.
T Consensus       117 ~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~-~p~~G~~pI~vdg~~-~----~~i~~v  184 (460)
T 2npi_A          117 TMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA-LKFNAYQPLYINLDP-Q----QPIFTV  184 (460)
T ss_dssp             THHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT-HHHHCCCCEEEECCT-T----SCSSSC
T ss_pred             chhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc-cccCCceeEEEcCCc-c----CCeeee
Confidence            4788889988885      799999999999999999999999999999977 56678 7 8888742 1    111222


Q ss_pred             hhhH-----------HHHHHHH----------HHHHHHHHHcCccee--ecccCccHHHH-HHHHH--hCCCCCe----E
Q 029613           81 AEDR-----------TENIRRV----------GEVAKLFADAGLICI--ASLISPYRKDR-DACRA--MLPDSNF----I  130 (190)
Q Consensus        81 ~~~~-----------~~~~~~~----------~~~~~~~~~~~~~~~--~~~lS~g~kqr-~iara--ll~~~~i----l  130 (190)
                      ++..           .+++ ..          ..+..++...++...  +..||+||+|| ++||+  ++.+|++    +
T Consensus       185 pq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGL  263 (460)
T 2npi_A          185 PGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGC  263 (460)
T ss_dssp             SSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCE
T ss_pred             ccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceE
Confidence            2110           0000 00          000011111222111  56799999999 69999  9999999    9


Q ss_pred             EEEeeC-CchhhhhcChHHHHHHHHc
Q 029613          131 EVFMNM-PLELCEARDPKGLYKLARA  155 (190)
Q Consensus       131 ~vllDE-P~~~ld~~~~~~~~~~~~~  155 (190)
                        +||| ||++||.. .+.+.+.+++
T Consensus       264 --lLDEpPts~LD~~-~~~l~~l~~~  286 (460)
T 2npi_A          264 --IVDTPSISQLDEN-LAELHHIIEK  286 (460)
T ss_dssp             --EEECCCGGGSCSS-CHHHHHHHHH
T ss_pred             --EEeCCcccccChh-HHHHHHHHHH
Confidence              9999 99999999 7777777765

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.82  E-value=2.7e-22  Score=156.98  Aligned_cols=130  Identities=14%  Similarity=0.113  Sum_probs=84.1

Q ss_pred             eccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc---cccccccCCChhhHHHHH
Q 029613           12 WQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR---HGLNKNLGFSAEDRTENI   88 (190)
Q Consensus        12 ~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~---~~~~~~i~~~~~~~~~~~   88 (190)
                      ++|+.+.+++++    ++|++++|+||||||||||+++|+|+  ++.+|.|..  .++.   ...+..++|.+++..+++
T Consensus         8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl--~p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~~enl   79 (208)
T 3b85_A            8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ--ALQSKQVSR--IILTRPAVEAGEKLGFLPGTLNEKI   79 (208)
T ss_dssp             CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH--HHHTTSCSE--EEEEECSCCTTCCCCSSCC------
T ss_pred             CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC--CCcCCeeee--EEecCCchhhhcceEEecCCHHHHH
Confidence            467778899986    89999999999999999999999997  455666532  1111   122345677777654443


Q ss_pred             -HHHHHHHHHHHH-cC---cceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           89 -RRVGEVAKLFAD-AG---LICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        89 -~~~~~~~~~~~~-~~---~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                       .........+.. ..   +...... ..||+|| .+||+++.+|+++  +|||||++    .++.+.+.+++-
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~ll--lLDEPts~----~~~~l~~~l~~l  146 (208)
T 3b85_A           80 DPYLRPLHDALRDMVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFV--ILDEAQNT----TPAQMKMFLTRL  146 (208)
T ss_dssp             CTTTHHHHHHHTTTSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEE--EECSGGGC----CHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEE--EEeCCccc----cHHHHHHHHHHh
Confidence             111100000000 00   0011111 3499999 6999999999999  99999999    778888888764

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.80  E-value=2.2e-20  Score=171.14  Aligned_cols=61  Identities=13%  Similarity=0.066  Sum_probs=50.0

Q ss_pred             HHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCC---CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           94 VAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPD---SNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        94 ~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~---~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ...++..+++.     ..+..||+||+|| .+|++++.+   |+++  +|||||++||..+.+.+++.+++.
T Consensus       710 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lL--ILDEPTsGLD~~~~~~l~~lL~~L  779 (842)
T 2vf7_A          710 ALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVY--VLDEPTTGLHPADVERLQRQLVKL  779 (842)
T ss_dssp             HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEE--EEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHH
Confidence            34455555553     2367899999999 699999996   6999  999999999999999999888764

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.79  E-value=2.1e-21  Score=159.90  Aligned_cols=127  Identities=15%  Similarity=0.039  Sum_probs=89.9

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc---c-cccccc-ccC
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN---L-RHGLNK-NLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~---~-~~~~~~-~i~   78 (190)
                      +|+++|++++|+ .++|+++||++++|++++|+||||||||||+++|+|++    +|.|...+..   + ...+.. ++.
T Consensus       101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~v~q~~~lf~~ti~~~ni~  175 (305)
T 2v9p_A          101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSFANHKSHFWLASLADTRAA  175 (305)
T ss_dssp             HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEECGGGTTSGGGGGGGTTCSCE
T ss_pred             eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEEEecCccccccccHHHHhhc
Confidence            478899999998 77999999999999999999999999999999999977    6777653321   1 111221 333


Q ss_pred             CChhhHHHHHHHHHHHHHH-HHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHH
Q 029613           79 FSAEDRTENIRRVGEVAKL-FADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLY  150 (190)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~  150 (190)
                      +.++.. +   .+...... +. .++.  +..||+|||||  ||+++.+|+++  +    |++||+...+.+.
T Consensus       176 ~~~~~~-~---~~~~~i~~~L~-~gld--g~~LSgGqkQR--ARAll~~p~iL--l----Ts~LD~~~~~~i~  233 (305)
T 2v9p_A          176 LVDDAT-H---ACWRYFDTYLR-NALD--GYPVSIDRKHK--AAVQIKAPPLL--V----TSNIDVQAEDRYL  233 (305)
T ss_dssp             EEEEEC-H---HHHHHHHHTTT-GGGG--TCCEECCCSSC--CCCEECCCCEE--E----EESSCSTTCGGGG
T ss_pred             cCcccc-H---HHHHHHHHHhH-ccCC--ccCcCHHHHHH--HHHHhCCCCEE--E----ECCCCHHHHHHHH
Confidence            321111 1   11111111 11 1221  66799999999  99999999997  6    9999998877765

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.78  E-value=1.6e-19  Score=153.59  Aligned_cols=46  Identities=4%  Similarity=-0.180  Sum_probs=42.9

Q ss_pred             cCccHHHH-HHHHHhCCCC--CeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          110 ISPYRKDR-DACRAMLPDS--NFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       110 lS~g~kqr-~iarall~~~--~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      +|+||+|| .+|++++.+|  +++  +|||||++||......+.+.+++-.
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~L--lLDEpt~~LD~~~~~~l~~~L~~l~  344 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSV--VFDEVDAGIGGAAAIAVAEQLSRLA  344 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEE--EESSTTTTCCHHHHHHHHHHHHHHT
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHHh
Confidence            79999999 6999999999  999  9999999999999999999998743

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.77  E-value=3.1e-20  Score=145.92  Aligned_cols=133  Identities=12%  Similarity=0.029  Sum_probs=80.5

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCCChhhHHHHHHH
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGFSAEDRTENIRR   90 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~~~~~~~~~~~~   90 (190)
                      ....|+++||++++|++++|+||||||||||+++|+|++ +   |.+.+ |.++...     ....++|.+++.......
T Consensus         9 ~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p---G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   83 (218)
T 1z6g_A            9 HHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P---NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK   83 (218)
T ss_dssp             -------------CCCCEEEECSTTSSHHHHHHHHHHHS-T---TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred             ccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C---CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence            356799999999999999999999999999999999976 3   66777 5544211     122344444332211110


Q ss_pred             H--------------------HHHHHHHHHcCcceeecccCccHHHH-HH-----HHHhCCCCCeEEEEeeCCchhhhhc
Q 029613           91 V--------------------GEVAKLFADAGLICIASLISPYRKDR-DA-----CRAMLPDSNFIEVFMNMPLELCEAR  144 (190)
Q Consensus        91 ~--------------------~~~~~~~~~~~~~~~~~~lS~g~kqr-~i-----arall~~~~il~vllDEP~~~ld~~  144 (190)
                      .                    ..+..++...........+|+|++|| .+     +++++..|+++  +||||++.+|..
T Consensus        84 ~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~--~Lde~~~~~d~~  161 (218)
T 1z6g_A           84 LKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTD--VLLSRLLTRNTE  161 (218)
T ss_dssp             HHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHH--HHHHHHHHTCCC
T ss_pred             hhccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHH--HHHHHHHhcCCC
Confidence            0                    11222333322222345689999999 48     78899899998  999999999998


Q ss_pred             ChHHHHHHHHc
Q 029613          145 DPKGLYKLARA  155 (190)
Q Consensus       145 ~~~~~~~~~~~  155 (190)
                      ..+.+.+.+.+
T Consensus       162 ~~~~i~~~l~~  172 (218)
T 1z6g_A          162 NQEQIQKRMEQ  172 (218)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            88777776653

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.76  E-value=5.4e-19  Score=162.96  Aligned_cols=60  Identities=17%  Similarity=0.128  Sum_probs=49.6

Q ss_pred             HHHHHHcCcce-----eecccCccHHHH-HHHHHhCCCC---CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           95 AKLFADAGLIC-----IASLISPYRKDR-DACRAMLPDS---NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        95 ~~~~~~~~~~~-----~~~~lS~g~kqr-~iarall~~~---~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ...+..+++..     .+..||+||+|| .+|++++.+|   +++  +|||||++||..+++.+++.+++.
T Consensus       826 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lL--ILDEPTsGLD~~~~~~l~~lL~~L  894 (972)
T 2r6f_A          826 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLY--ILDEPTTGLHVDDIARLLDVLHRL  894 (972)
T ss_dssp             HHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEE--EEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHH
Confidence            34555666543     367899999999 6999999875   899  999999999999999999888764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.76  E-value=1e-20  Score=161.63  Aligned_cols=127  Identities=16%  Similarity=0.060  Sum_probs=90.6

Q ss_pred             cccccccccccCCcc--------------------EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-----
Q 029613           17 IGRLERQKLLNQKGC--------------------VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-----   71 (190)
Q Consensus        17 ~~~l~~~sl~i~~Ge--------------------ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-----   71 (190)
                      ..+++++||++++|+                    +++|+||||||||||+++|+|++ ++.+|.+.+++.++..     
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~-~p~~GsI~~~g~~~t~~~~v~  114 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG-NEEEGAAKTGVVEVTMERHPY  114 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC-TTSTTSCCCCC----CCCEEE
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC-CccCceEEECCeecceeEEec
Confidence            468999999999999                    99999999999999999999977 6778888777754311     


Q ss_pred             --------ccccccCCChhhHHHHHHHHHHHHHHHHHcCcc---eeecccCcc--HHHH-HHHHHhCC----------CC
Q 029613           72 --------GLNKNLGFSAEDRTENIRRVGEVAKLFADAGLI---CIASLISPY--RKDR-DACRAMLP----------DS  127 (190)
Q Consensus        72 --------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~lS~g--~kqr-~iarall~----------~~  127 (190)
                              ......++....     .   .+...+...++.   .... +|+|  ++|| .+|++++.          +|
T Consensus       115 q~~~~~~ltv~D~~g~~~~~-----~---~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkp  185 (413)
T 1tq4_A          115 KHPNIPNVVFWDLPGIGSTN-----F---PPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKV  185 (413)
T ss_dssp             ECSSCTTEEEEECCCGGGSS-----C---CHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred             cccccCCeeehHhhcccchH-----H---HHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecC
Confidence                    001111221100     0   111222222222   2233 8888  9999 59999999          99


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +++  ++||||++||+..++.+.+.+++
T Consensus       186 dll--lLDEPtsgLD~~~~~~l~~~l~~  211 (413)
T 1tq4_A          186 DSD--ITNEADGEPQTFDKEKVLQDIRL  211 (413)
T ss_dssp             HHH--HHHHHTTCCTTCCHHHHHHHHHH
T ss_pred             ccc--ccCcccccCCHHHHHHHHHHHHH
Confidence            998  99999999999999988877765

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=99.74  E-value=1.2e-17  Score=147.34  Aligned_cols=155  Identities=39%  Similarity=0.582  Sum_probs=90.6

Q ss_pred             cccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCc-EE-EEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcC
Q 029613           25 LLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL-SY-ILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAG  102 (190)
Q Consensus        25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g-~i-~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  102 (190)
                      ..+++|++++|+|+||||||||+++|++.+ .+..| .+ +++++++...+...+++...++..+.+++..+.+.+...+
T Consensus       364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L-~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~  442 (552)
T 3cr8_A          364 PRERQGFTVFFTGLSGAGKSTLARALAARL-MEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNR  442 (552)
T ss_dssp             CGGGSCEEEEEEESSCHHHHHHHHHHHHHH-HTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccceEEEEECCCCChHHHHHHHHHHhh-cccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            367899999999999999999999999998 44454 55 5899887654445567777666556666655555444444


Q ss_pred             cceeecccCccHHHHHHHHHhCCCC-CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEec
Q 029613          103 LICIASLISPYRKDRDACRAMLPDS-NFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKK  181 (190)
Q Consensus       103 ~~~~~~~lS~g~kqr~iarall~~~-~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~  181 (190)
                      ...+....+++...+..++.++... ++++|+||.|...|..|+++.+|...+.+.++++.+...+ |+.|..||+++|-
T Consensus       443 ~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~~-~e~P~~adl~Idt  521 (552)
T 3cr8_A          443 GIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSDP-YEVPETPELAIDT  521 (552)
T ss_dssp             CEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------CC-CCCCSSCSEEECC
T ss_pred             CEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccccccccHhHHHHHHhcccc-ccCCCCCCEEEEC
Confidence            4444444444455555566666543 4777899999999999999999987777889999999999 9999999999974

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.74  E-value=7.4e-18  Score=155.67  Aligned_cols=61  Identities=15%  Similarity=0.134  Sum_probs=49.8

Q ss_pred             HHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCC---CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           94 VAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDS---NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        94 ~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~---~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ....+...++.     ..+..|||||+|| .+||+|+.+|   +++  +|||||++||+.+.+.+++.+++.
T Consensus       785 ~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LL--ILDEPTsGLD~~~~~~L~~lL~~L  854 (916)
T 3pih_A          785 TLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLY--ILDEPTVGLHFEDVRKLVEVLHRL  854 (916)
T ss_dssp             HHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEE--EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEE--EEECCCCCCCHHHHHHHHHHHHHH
Confidence            34455566653     3467899999999 6999999875   699  999999999999999999888764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.71  E-value=1.4e-18  Score=144.68  Aligned_cols=92  Identities=13%  Similarity=0.022  Sum_probs=72.2

Q ss_pred             ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHH
Q 029613           18 GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKL   97 (190)
Q Consensus        18 ~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   97 (190)
                      .+++++++.+++|++++|+||||||||||+++|+|++ ++.+|.|.++|.+...       ...  ..            
T Consensus       159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~-~~~~g~i~i~~~~e~~-------~~~--~~------------  216 (330)
T 2pt7_A          159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI-PKEERIISIEDTEEIV-------FKH--HK------------  216 (330)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS-CTTSCEEEEESSCCCC-------CSS--CS------------
T ss_pred             HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCcEEEECCeeccc-------ccc--ch------------
Confidence            4789999999999999999999999999999999987 6789999998864211       000  00            


Q ss_pred             HHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613           98 FADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE  139 (190)
Q Consensus        98 ~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~  139 (190)
                          ....++.  .+|++|| .+++++..+|+++  +||||++
T Consensus       217 ----~~i~~~~--ggg~~~r~~la~aL~~~p~il--ildE~~~  251 (330)
T 2pt7_A          217 ----NYTQLFF--GGNITSADCLKSCLRMRPDRI--ILGELRS  251 (330)
T ss_dssp             ----SEEEEEC--BTTBCHHHHHHHHTTSCCSEE--EECCCCS
T ss_pred             ----hEEEEEe--CCChhHHHHHHHHhhhCCCEE--EEcCCCh
Confidence                0000110  1789999 5999999999999  9999998

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.71  E-value=3.3e-19  Score=147.37  Aligned_cols=131  Identities=14%  Similarity=0.016  Sum_probs=84.7

Q ss_pred             ccccCcceeccCccccccccccc-----------------------cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLL-----------------------NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL   60 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~-----------------------i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g   60 (190)
                      +|++++|++.|+  ++++++++.                       +++|++++|+||||||||||+++|+|++. +..|
T Consensus        43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~-~~~G  119 (312)
T 3aez_A           43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA-RWDH  119 (312)
T ss_dssp             CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH-TSTT
T ss_pred             eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc-ccCC
Confidence            578899999995  566666654                       89999999999999999999999999884 4322


Q ss_pred             ----EEEEcCccccc-ccccccCCC-----hhhHHHHHHHHHHHHHHHHHcCcc-eeecccCccHHHH-HHHHHhCCCCC
Q 029613           61 ----SYILDGDNLRH-GLNKNLGFS-----AEDRTENIRRVGEVAKLFADAGLI-CIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        61 ----~i~~~g~~~~~-~~~~~i~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                          .+...+..+.. ....++.+.     +..  .....+.+....+. .+.. ..+..+|+|++|| .+|++++.+|+
T Consensus       120 ~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~--~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~  196 (312)
T 3aez_A          120 HPRVDLVTTDGFLYPNAELQRRNLMHRKGFPES--YNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPD  196 (312)
T ss_dssp             CCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGG--BCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCS
T ss_pred             CCeEEEEecCccCCcccHHHHHHHHHhcCCChH--HHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCC
Confidence                12222111110 111111110     110  00112222333333 2332 4467899999999 59999999999


Q ss_pred             eEEEEeeCCchhhh
Q 029613          129 FIEVFMNMPLELCE  142 (190)
Q Consensus       129 il~vllDEP~~~ld  142 (190)
                      ++  +||||+..+|
T Consensus       197 il--IlDep~~~~d  208 (312)
T 3aez_A          197 IL--ILEGLNVLQT  208 (312)
T ss_dssp             EE--EEECTTTTCC
T ss_pred             EE--EECCccccCC
Confidence            99  9999999874

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.69  E-value=6e-18  Score=129.14  Aligned_cols=112  Identities=16%  Similarity=0.122  Sum_probs=72.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccCCChhhHH--HHHHHHHHHHHHHHH-cCcc
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLGFSAEDRT--ENIRRVGEVAKLFAD-AGLI  104 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~-~~~~  104 (190)
                      .++|+||||||||||+++|+|++.      +.++|.+...    .....++|..++..  +++  +....  +.. ....
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~--~~~~~--~~~~~~~~   71 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI--FSSKF--FTSKKLVG   71 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEETTCCEEE--EEETT--CCCSSEET
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecCcHHHHH--HHhhc--CCcccccc
Confidence            589999999999999999999873      2233322111    11122333332210  000  00000  000 0112


Q ss_pred             eeecccCccHHHH-HHHHH-----hCCCCCeEEEEeeC--CchhhhhcChHHHHHHHHc
Q 029613          105 CIASLISPYRKDR-DACRA-----MLPDSNFIEVFMNM--PLELCEARDPKGLYKLARA  155 (190)
Q Consensus       105 ~~~~~lS~g~kqr-~iara-----ll~~~~il~vllDE--P~~~ld~~~~~~~~~~~~~  155 (190)
                      ..+..+|+||+|| .+|++     ++.+|+++  +|||  |++++|+...+.+.+.+++
T Consensus        72 ~~~~~lSgG~~qr~~la~aa~~~~l~~~p~ll--ilDEigp~~~ld~~~~~~l~~~l~~  128 (178)
T 1ye8_A           72 SYGVNVQYFEELAIPILERAYREAKKDRRKVI--IIDEIGKMELFSKKFRDLVRQIMHD  128 (178)
T ss_dssp             TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEE--EECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred             ccccCcCHHHHHHHHHHhhccccccccCCCEE--EEeCCCCcccCCHHHHHHHHHHHhc
Confidence            3466799999999 69996     99999999  9999  9999999999999988876

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.69  E-value=2.3e-17  Score=133.15  Aligned_cols=118  Identities=16%  Similarity=0.168  Sum_probs=79.9

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC-CcEEEEcCcccccccccccCCChh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG-KLSYILDGDNLRHGLNKNLGFSAE   82 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~-~g~i~~~g~~~~~~~~~~i~~~~~   82 (190)
                      ++.++++.+.    ++++++|  +++|++++|+||||||||||+++|+|++ ++. +|.|.++|+++........++..+
T Consensus         5 ~~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~-~~~~~G~I~~~g~~i~~~~~~~~~~v~q   77 (261)
T 2eyu_A            5 IPEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI-NQTKSYHIITIEDPIEYVFKHKKSIVNQ   77 (261)
T ss_dssp             -CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHH-HHHCCCEEEEEESSCCSCCCCSSSEEEE
T ss_pred             CCChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhC-CCCCCCEEEEcCCcceeecCCcceeeeH
Confidence            5678888764    6899999  8999999999999999999999999988 454 789999888764211111111100


Q ss_pred             hHHHHHHHHHHHHHHHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613           83 DRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .                ..++       ....-...+++++..+|+++  ++|||+   |+.....+.+.+..|
T Consensus        78 ~----------------~~gl-------~~~~l~~~la~aL~~~p~il--llDEp~---D~~~~~~~l~~~~~g  123 (261)
T 2eyu_A           78 R----------------EVGE-------DTKSFADALRAALREDPDVI--FVGEMR---DLETVETALRAAETG  123 (261)
T ss_dssp             E----------------EBTT-------TBSCHHHHHHHHHHHCCSEE--EESCCC---SHHHHHHHHHHHHTT
T ss_pred             H----------------HhCC-------CHHHHHHHHHHHHhhCCCEE--EeCCCC---CHHHHHHHHHHHccC
Confidence            0                0111       11111236999999999999  999999   554444444444433

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.68  E-value=7.5e-17  Score=135.82  Aligned_cols=55  Identities=9%  Similarity=0.019  Sum_probs=47.1

Q ss_pred             eecccCccHHHH-HHHHHhC------CCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          106 IASLISPYRKDR-DACRAML------PDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       106 ~~~~lS~g~kqr-~iarall------~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                      .+..||+||+|| .+|++++      .+|+++  +|||||++||+.....+.+.+++....|.+
T Consensus       276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~l--llDEpt~~LD~~~~~~~~~~l~~l~~~g~t  337 (365)
T 3qf7_A          276 PARGLSGGERALISISLAMSLAEVASGRLDAF--FIDEGFSSLDTENKEKIASVLKELERLNKV  337 (365)
T ss_dssp             EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEE--EEESCCTTSCHHHHHHHHHHHHGGGGSSSE
T ss_pred             CchhCCHHHHHHHHHHHHHHhhhcccCCCCEE--EEeCCCccCCHHHHHHHHHHHHHHHhCCCE
Confidence            356799999999 6999998      799999  999999999999999999999875444433

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.68  E-value=1.1e-16  Score=132.54  Aligned_cols=48  Identities=15%  Similarity=0.097  Sum_probs=43.0

Q ss_pred             ecccCccHHHH-HHHHHhC----CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          107 ASLISPYRKDR-DACRAML----PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       107 ~~~lS~g~kqr-~iarall----~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +..+|+||+|| ++|++++    .+|+++  +|||||++||+...+.+.+.+++.
T Consensus       217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~l--llDEp~~~LD~~~~~~l~~~l~~~  269 (322)
T 1e69_A          217 LSLLSGGEKALVGLALLFALMEIKPSPFY--VLDEVDSPLDDYNAERFKRLLKEN  269 (322)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTSCCSEE--EEESCCSSCCHHHHHHHHHHHHHH
T ss_pred             hhhCCHHHHHHHHHHHHHHHhccCCCCEE--EEeCCCCCCCHHHHHHHHHHHHHh
Confidence            46799999999 6999985    678999  999999999999999999988764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.68  E-value=2.6e-17  Score=135.40  Aligned_cols=126  Identities=10%  Similarity=0.074  Sum_probs=79.1

Q ss_pred             cCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--------c--ccccCCChhh
Q 029613           14 ESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--------L--NKNLGFSAED   83 (190)
Q Consensus        14 ~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--------~--~~~i~~~~~~   83 (190)
                      ++...+++.+||++++|++++|+|||||||||+++.|+|++ .+.+|.|.+.+.++...        .  +..+++.+++
T Consensus        84 l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l-~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~  162 (302)
T 3b9q_A           84 LAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAE  162 (302)
T ss_dssp             HCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC
T ss_pred             hCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEec
Confidence            33333346789999999999999999999999999999988 55678899988775321        0  1123333322


Q ss_pred             HH---HHHHHHHHHHHH-HHH--------cCcce----eecccCccHHHH-HHHHHhCCCCC--eEEEEeeCCchhhhhc
Q 029613           84 RT---ENIRRVGEVAKL-FAD--------AGLIC----IASLISPYRKDR-DACRAMLPDSN--FIEVFMNMPLELCEAR  144 (190)
Q Consensus        84 ~~---~~~~~~~~~~~~-~~~--------~~~~~----~~~~lS~g~kqr-~iarall~~~~--il~vllDEP~~~ld~~  144 (190)
                      ..   ........+... ...        .+...    .+..+|   +|| .+||+++.+|+  ++  +|| ||+++|..
T Consensus       163 ~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lL--vLD-ptsglD~~  236 (302)
T 3b9q_A          163 GDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILL--VLD-GNTGLNML  236 (302)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEE--EEE-GGGGGGGH
T ss_pred             CCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEE--EEe-CCCCcCHH
Confidence            11   000000111100 000        11111    123355   677 69999999999  88  999 99999876


Q ss_pred             Ch
Q 029613          145 DP  146 (190)
Q Consensus       145 ~~  146 (190)
                      ..
T Consensus       237 ~~  238 (302)
T 3b9q_A          237 PQ  238 (302)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.66  E-value=3e-15  Score=113.26  Aligned_cols=154  Identities=55%  Similarity=0.933  Sum_probs=106.9

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceee
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIA  107 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (190)
                      .+|++++|+|++||||||++++|++.+.+.+...+.++++.+...+....++..++....+.++...+..+...+.....
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCIT   82 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHHHHHHHHHHHHCCCEEEE
Confidence            47999999999999999999999998854344477778877765444445676666666666655544455455554444


Q ss_pred             cccCccHHHHHHHHHhCC--CCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEecC
Q 029613          108 SLISPYRKDRDACRAMLP--DSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKI  182 (190)
Q Consensus       108 ~~lS~g~kqr~iarall~--~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~  182 (190)
                      ..+++...++...+.++.  ....++++||.|...+-.|..+.++...+.+++......... |+.|..+++++|--
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ad~vid~~  158 (179)
T 2pez_A           83 SFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSE-YEKPEAPELVLKTD  158 (179)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCSCBTTTBC-CCCCSSCSEEEETT
T ss_pred             ecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhcccccccccCCcc-ccCCCCCcEEEECC
Confidence            556666554533333321  123345699999999988877777777777777776666777 89899999988753

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.65  E-value=2.4e-15  Score=134.07  Aligned_cols=174  Identities=52%  Similarity=0.888  Sum_probs=122.4

Q ss_pred             CcceeccCccccccccccccC----CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh
Q 029613            8 TNIFWQESPIGRLERQKLLNQ----KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED   83 (190)
Q Consensus         8 ~~l~~~~~~~~~l~~~sl~i~----~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~   83 (190)
                      .|+.|.-..++.-++....-+    +|.+++|+|.+||||||+++.|+..+...+...+.++++.+...+....++...+
T Consensus        26 ~~~~~~~~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~d  105 (630)
T 1x6v_B           26 TNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED  105 (630)
T ss_dssp             --------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHH
T ss_pred             ccccccccCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhh
Confidence            456665555554455554444    7889999999999999999999998855566677888887766554445577667


Q ss_pred             HHHHHHHHHHHHHHHHHcCcceeecccCccHHHHHHHHHhCCCC--CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCc
Q 029613           84 RTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDS--NFIEVFMNMPLELCEARDPKGLYKLARAGKIKGL  161 (190)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~~~--~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~  161 (190)
                      +.++++++..++..+...+...+....++.+..|..++.++.+.  +++.|+||.|...+-.|..+.+|+..+++++..+
T Consensus       106 ree~~r~i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~~~~  185 (630)
T 1x6v_B          106 REENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGF  185 (630)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC----C
T ss_pred             hHHHHHHHHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhHHHH
Confidence            77777777666665556676666555666665666566655432  4666799999999999998899988888888889


Q ss_pred             ccccccccCCCCCCceEEecC
Q 029613          162 LSIFSFCYYEKLIPRTCKKKI  182 (190)
Q Consensus       162 ~~~~~~~~~~p~~p~~~~~~~  182 (190)
                      .+.... |+.|..|++++|--
T Consensus       186 ~~~~~~-Ye~p~~~dlvIDts  205 (630)
T 1x6v_B          186 TGIDSE-YEKPEAPELVLKTD  205 (630)
T ss_dssp             BTTTBC-CCCCSSCSEEEETT
T ss_pred             HHhhhh-hcccCCCcEEEECC
Confidence            999999 99999999999864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.63  E-value=1e-14  Score=110.91  Aligned_cols=158  Identities=35%  Similarity=0.590  Sum_probs=105.8

Q ss_pred             ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCc
Q 029613           24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGL  103 (190)
Q Consensus        24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (190)
                      .+...+|.+++|+|++||||||+++.|+..+...+.-.++++++.+...+....++...++...+..+..++..+...+.
T Consensus         7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g~   86 (186)
T 2yvu_A            7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGV   86 (186)
T ss_dssp             -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCCC
Confidence            45567899999999999999999999999885444434567777765544444556666655555444444444334454


Q ss_pred             ceeecccCccHHHHHHHHHhCCC--CCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEec
Q 029613          104 ICIASLISPYRKDRDACRAMLPD--SNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKK  181 (190)
Q Consensus       104 ~~~~~~lS~g~kqr~iarall~~--~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~  181 (190)
                      ..+....+..+..|...+.++..  .+.+.|+||.|...+-.|..+.++...+...+..+..+... |++|..+++++|.
T Consensus        87 ~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~~Id~  165 (186)
T 2yvu_A           87 IVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELENFTGITDP-YEPPENPQLVLDT  165 (186)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSSCHHHHSC-CCCCSSCSEEEET
T ss_pred             EEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhhhhhhhhc-ccCCCCCcEEEEC
Confidence            44444455555555444444332  23445699999999988887776666556666666667777 9988888999986


Q ss_pred             C
Q 029613          182 I  182 (190)
Q Consensus       182 ~  182 (190)
                      -
T Consensus       166 ~  166 (186)
T 2yvu_A          166 E  166 (186)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.63  E-value=3.6e-15  Score=115.94  Aligned_cols=173  Identities=52%  Similarity=0.819  Sum_probs=113.7

Q ss_pred             cceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCcEEEEcCcccccccccccCCChhhHHHH
Q 029613            9 NIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILDGDNLRHGLNKNLGFSAEDRTEN   87 (190)
Q Consensus         9 ~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~   87 (190)
                      +..|.-+..+...+-.+.+++|.+++|+|++||||||+++.|++.+. ..|...++++++.+...+.....+...++.+.
T Consensus         4 ~~~~~~~~~~~~~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~   83 (211)
T 1m7g_A            4 NITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNEN   83 (211)
T ss_dssp             CCCHHHHCCCHHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHH
T ss_pred             cccccccccCHHHhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccCCCHHHHHHH
Confidence            34444445566677778899999999999999999999999999884 22323788888776544433334554555555


Q ss_pred             HHHHHHHHHHHHHcCcceeecccCccHHHHHHHHHhCC--------CCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCC
Q 029613           88 IRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLP--------DSNFIEVFMNMPLELCEARDPKGLYKLARAGKIK  159 (190)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~--------~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~  159 (190)
                      +..+..........+...+....+..+..+..++.+..        ..+.+.|+||.|...+-.|..+.++...+++...
T Consensus        84 ~~~~~~~~~~~l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~~~  163 (211)
T 1m7g_A           84 IRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIK  163 (211)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHHHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcchh
Confidence            54443332222233443444444444444544444322        1223456999999999888767777777777766


Q ss_pred             CcccccccccCCCCCCceEEecC
Q 029613          160 GLLSIFSFCYYEKLIPRTCKKKI  182 (190)
Q Consensus       160 ~~~~~~~~~~~~p~~p~~~~~~~  182 (190)
                      ........ |+.|..|++++|.-
T Consensus       164 ~~~~~~~~-y~~~~~~~~~IDt~  185 (211)
T 1m7g_A          164 EFTGISAP-YEAPANPEVHVKNY  185 (211)
T ss_dssp             SCBTTTBC-CCCCSSCSEEEECS
T ss_pred             hhhhhhhh-ccCCCCCeEEEECC
Confidence            66677777 99888899998853

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.62  E-value=4.5e-15  Score=131.57  Aligned_cols=155  Identities=34%  Similarity=0.550  Sum_probs=126.0

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHHhhCC-CcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcce
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRG-KLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLIC  105 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~-~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (190)
                      -+.|.+++|+|++||||||+++.|+..+...| ...+.++++.+...+....++...++.++++++..+...+...+...
T Consensus       393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~V  472 (573)
T 1m8p_A          393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAV  472 (573)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCEE
Confidence            45678999999999999999999999884333 44678888887766655667787777777877777777776777777


Q ss_pred             eecccCccHHHHHHHHHhCCCC-CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEecC
Q 029613          106 IASLISPYRKDRDACRAMLPDS-NFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKI  182 (190)
Q Consensus       106 ~~~~lS~g~kqr~iarall~~~-~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~  182 (190)
                      +...+++.+..|..++.++.+. .++.|+||.|...|..|..+.+++..+.+.++.+++...+ |+.|..|++++|--
T Consensus       473 I~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~~~~r~~-~~~p~~~dl~IDts  549 (573)
T 1m8p_A          473 IAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDP-YETPEKADLVVDFS  549 (573)
T ss_dssp             EEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBC-CCCCSSCSEEECTT
T ss_pred             EEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHHHhcccc-ccccCCCCEEEECC
Confidence            7777888887787777776653 4566799999999999999999988888889999999999 99999999999853

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.61  E-value=5.3e-16  Score=130.32  Aligned_cols=118  Identities=12%  Similarity=0.150  Sum_probs=76.8

Q ss_pred             cccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--------c--ccccCCChhh-------
Q 029613           21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--------L--NKNLGFSAED-------   83 (190)
Q Consensus        21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--------~--~~~i~~~~~~-------   83 (190)
                      +.+||++++|++++|+|||||||||+++.|+|++ .+.+|.|.+.+.++...        .  +..+++.+++       
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l-~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~  226 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA  226 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc-cccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence            4689999999999999999999999999999988 55678899988775321        0  1123332221       


Q ss_pred             --HHHHHHHHHHHHH----HHHHcCcce----eecccCccHHHH-HHHHHhCCCCC--eEEEEeeCCchhhhhcCh
Q 029613           84 --RTENIRRVGEVAK----LFADAGLIC----IASLISPYRKDR-DACRAMLPDSN--FIEVFMNMPLELCEARDP  146 (190)
Q Consensus        84 --~~~~~~~~~~~~~----~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~--il~vllDEP~~~ld~~~~  146 (190)
                        ..+++... ....    +++..+...    .+..||   +|| .+||+++.+|+  ++  +|| ||+++|....
T Consensus       227 ~tv~e~l~~~-~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lL--vLD-pttglD~~~~  295 (359)
T 2og2_A          227 TVLSKAVKRG-KEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILL--VLD-GNTGLNMLPQ  295 (359)
T ss_dssp             HHHHHHHHHH-HHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEE--EEE-GGGGGGGHHH
T ss_pred             hhHHHHHHHH-HhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEE--EEc-CCCCCCHHHH
Confidence              11111110 0000    000011111    123355   677 69999999999  88  999 9999987654

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.60  E-value=8.5e-16  Score=132.26  Aligned_cols=140  Identities=14%  Similarity=0.064  Sum_probs=98.5

Q ss_pred             ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc---cccc--------
Q 029613            4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD---NLRH--------   71 (190)
Q Consensus         4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~---~~~~--------   71 (190)
                      +++++++++.|+ +..+++++ |.+.+|++++|+||||||||||+++|+|++ +++.|.|.++|.   ++..        
T Consensus       131 ~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~-~~~~G~i~~~G~r~~ev~~~~~~~~~~  208 (438)
T 2dpy_A          131 PLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT-RADVIVVGLIGERGREVKDFIENILGP  208 (438)
T ss_dssp             TTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS-CCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred             ceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc-CCCeEEEEEeceecHHHHHHHHhhccc
Confidence            689999999997 68899999 999999999999999999999999999987 788999999987   4432        


Q ss_pred             -ccccccCCChhh---HHHHHHH---HHHHHHHHHHcCc--c---eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613           72 -GLNKNLGFSAED---RTENIRR---VGEVAKLFADAGL--I---CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL  138 (190)
Q Consensus        72 -~~~~~i~~~~~~---~~~~~~~---~~~~~~~~~~~~~--~---~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~  138 (190)
                       .+...+++..+.   ...++..   +...++.+...+.  .   .....+|+|+ || .+|   +.+|++        |
T Consensus       209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~~--------t  276 (438)
T 2dpy_A          209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPPA--------T  276 (438)
T ss_dssp             HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCCC--------S
T ss_pred             cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCcc--------c
Confidence             122233343331   1111111   1112222322121  1   1245578888 55 466   888876        8


Q ss_pred             hhhhhcChHHHHHHHHcCC
Q 029613          139 ELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       139 ~~ld~~~~~~~~~~~~~~~  157 (190)
                      +++|+.....+.+.+++..
T Consensus       277 ~glD~~~~~~l~~ll~r~~  295 (438)
T 2dpy_A          277 KGYPPSVFAKLPALVERAG  295 (438)
T ss_dssp             SSCCTTHHHHHHHHHTTCS
T ss_pred             ccCCHHHHHHHHHHHHHHH
Confidence            9999999999998887653

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.60  E-value=5.5e-16  Score=136.10  Aligned_cols=149  Identities=11%  Similarity=0.073  Sum_probs=96.2

Q ss_pred             cccccCcceeccCcccccccccc-ccCCccEEEEECCCCCcHHHHHHH--HHHHHhhCCCcEEEEcCcccccc---cccc
Q 029613            3 TVGNSTNIFWQESPIGRLERQKL-LNQKGCVVWITGLSGSGKSTLAFS--VNKELYSRGKLSYILDGDNLRHG---LNKN   76 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl-~i~~Geii~L~G~nGsGKSTLlr~--l~g~l~~~~~g~i~~~g~~~~~~---~~~~   76 (190)
                      .+++.+++.+-.++.++|+++++ .+.+|++++|+||||||||||+++  ++|++ ++++|.+++++.+....   ....
T Consensus        11 ~~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~-~~~~g~i~v~g~~~~~~~~~~~~~   89 (525)
T 1tf7_A           11 NNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII-EFDEPGVFVTFEETPQDIIKNARS   89 (525)
T ss_dssp             ---CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSSCHHHHHHHHGG
T ss_pred             CCccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH-hCCCCEEEEEEeCCHHHHHHHHHH
Confidence            35777888777778999999999 999999999999999999999999  68977 66889999998774321   1223


Q ss_pred             cCCChhhHHHHHHHHHHHHHHHHHcCc------ceeecccCccHHHHHHHHHhC-CCCCeEEEEeeCCchh-----hhhc
Q 029613           77 LGFSAEDRTENIRRVGEVAKLFADAGL------ICIASLISPYRKDRDACRAML-PDSNFIEVFMNMPLEL-----CEAR  144 (190)
Q Consensus        77 i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lS~g~kqr~iarall-~~~~il~vllDEP~~~-----ld~~  144 (190)
                      +++..++....    ..    +.....      ......+........++.++. .+|+++  +||||++.     +|+.
T Consensus        90 ~g~~~q~~~~~----~~----l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~l--ilDe~t~~~~~~~lD~~  159 (525)
T 1tf7_A           90 FGWDLAKLVDE----GK----LFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRV--SIDSVTSVFQQYDASSV  159 (525)
T ss_dssp             GTCCHHHHHHT----TS----EEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEE--EEECSTTTSTTTCCHHH
T ss_pred             cCCChHHhhcc----Cc----EEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEE--EECCHHHHHHhcCCHHH
Confidence            45555543210    00    000000      000111222222224666664 578998  99999985     4777


Q ss_pred             ChHHHHHHHHcCCCCCcc
Q 029613          145 DPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~  162 (190)
                      .++.+++.++..+..|.+
T Consensus       160 ~~~~l~~ll~~l~~~g~t  177 (525)
T 1tf7_A          160 VRRELFRLVARLKQIGAT  177 (525)
T ss_dssp             HHHHHHHHHHHHHHHTCE
T ss_pred             HHHHHHHHHHHHHHCCCE
Confidence            788888777754334433

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.59  E-value=1.8e-15  Score=132.89  Aligned_cols=121  Identities=12%  Similarity=0.053  Sum_probs=82.6

Q ss_pred             ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccccc---ccCCChhhHHHHHHHHHHHHHHHHH
Q 029613           24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNK---NLGFSAEDRTENIRRVGEVAKLFAD  100 (190)
Q Consensus        24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~  100 (190)
                      +..+.+|++++|+|+||||||||++.++|...+.+...+++..++....+..   .+++.             ... +..
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~-------------~~~-~~~  340 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD-------------FEE-MER  340 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCC-------------HHH-HHH
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCC-------------HHH-HHh
Confidence            5589999999999999999999999999987433332345544432111000   01111             011 112


Q ss_pred             cCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhc-----ChHHHHHHHHcCCCCCc
Q 029613          101 AGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEAR-----DPKGLYKLARAGKIKGL  161 (190)
Q Consensus       101 ~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~-----~~~~~~~~~~~~~~~~~  161 (190)
                      .+...    .+..+|+|++|| .+++++..+|+++  ++| |+++||..     .++.+++.++..+..|.
T Consensus       341 ~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~ll--ilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~  408 (525)
T 1tf7_A          341 QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARI--AID-SLSALARGVSNNAFRQFVIGVTGYAKQEEI  408 (525)
T ss_dssp             TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEE--EEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEE--EEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCC
Confidence            33332    256799999999 5999999999999  999 99999998     77777777765433443

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.58  E-value=1.2e-15  Score=117.50  Aligned_cols=145  Identities=14%  Similarity=0.088  Sum_probs=82.5

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh----hCCCcEEEE------cC-ccc
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY----SRGKLSYIL------DG-DNL   69 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~----~~~~g~i~~------~g-~~~   69 (190)
                      |+ +++++|+++.|+ ..++++  |.+.+|..++|+|+||||||||++.|+|...    .+..|.+.+      ++ ..+
T Consensus         1 m~-~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l   76 (210)
T 1pui_A            1 MT-NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL   76 (210)
T ss_dssp             -----------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE
T ss_pred             Cc-chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE
Confidence            54 689999999997 467877  8999999999999999999999999998541    234444322      11 111


Q ss_pred             ccccccccCCCh--------hhHHHHHHHH------------------------HHHHHHHHHcCcce-----eecccCc
Q 029613           70 RHGLNKNLGFSA--------EDRTENIRRV------------------------GEVAKLFADAGLIC-----IASLISP  112 (190)
Q Consensus        70 ~~~~~~~i~~~~--------~~~~~~~~~~------------------------~~~~~~~~~~~~~~-----~~~~lS~  112 (190)
                      ..    ..|+..        +........+                        .++..++...+...     ....+|+
T Consensus        77 ~D----t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~  152 (210)
T 1pui_A           77 VD----LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS  152 (210)
T ss_dssp             EE----CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH
T ss_pred             EE----CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc
Confidence            10    001100        0000000000                        01222222333321     2455899


Q ss_pred             cHHHH--HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          113 YRKDR--DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       113 g~kqr--~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +++|+  ..+++++.++..+  ++|||+|++|....+.+++.+.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~--~~~~~~Sal~~~~~~~l~~~l~~  195 (210)
T 1pui_A          153 GARKAQLNMVREAVLAFNGD--VQVETFSSLKKQGVDKLRQKLDT  195 (210)
T ss_dssp             HHHHHHHHHHHHHHGGGCSC--EEEEECBTTTTBSHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhcCCC--CceEEEeecCCCCHHHHHHHHHH
Confidence            99988  4888988888877  89999999999999999988875

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.57  E-value=4.8e-15  Score=124.02  Aligned_cols=140  Identities=19%  Similarity=0.036  Sum_probs=94.4

Q ss_pred             ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----------
Q 029613            4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----------   72 (190)
Q Consensus         4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----------   72 (190)
                      +++.+++++.|+ +..+++++ |.+.+|++++|+|+||||||||+++|+|.+ .++.|.+.+.|++....          
T Consensus        45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~-~~~~g~i~~~G~~~~ev~~~i~~~~~~  122 (347)
T 2obl_A           45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA-SADIIVLALIGERGREVNEFLALLPQS  122 (347)
T ss_dssp             STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS-CCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred             CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC-CCCEEEEEEecccHHHHHHHHHhhhhh
Confidence            689999999997 78899999 999999999999999999999999999987 67888888887652110          


Q ss_pred             -cccccCC------ChhhHHHHHHHHHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613           73 -LNKNLGF------SAEDRTENIRRVGEVAKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE  139 (190)
Q Consensus        73 -~~~~i~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~  139 (190)
                       +...+.+      .+..+.........+++.+...+..     ..+..+|+++ |+ .+|   +.+|++        ++
T Consensus       123 ~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~--------t~  190 (347)
T 2obl_A          123 TLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV--------RG  190 (347)
T ss_dssp             HHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC--------BT
T ss_pred             hhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc--------cc
Confidence             0000111      1111111111111223333322221     2255678888 55 455   577765        88


Q ss_pred             hhhhcChHHHHHHHHcCC
Q 029613          140 LCEARDPKGLYKLARAGK  157 (190)
Q Consensus       140 ~ld~~~~~~~~~~~~~~~  157 (190)
                      ++|+.....+.+.+++..
T Consensus       191 Gldp~~~~~l~~ller~~  208 (347)
T 2obl_A          191 GFPPSVFSSLPKLLERAG  208 (347)
T ss_dssp             TBCHHHHHHHHHHHTTCE
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999998887754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.56  E-value=2.7e-16  Score=117.86  Aligned_cols=64  Identities=17%  Similarity=0.043  Sum_probs=57.3

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      +...+++++|+...+++++||++++|++++|+||||||||||+|+|+|.+  +.+|.|.++|.++.
T Consensus         8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i~   71 (158)
T 1htw_A            8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTLV   71 (158)
T ss_dssp             ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTCE
T ss_pred             cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEeee
Confidence            45667889998888999999999999999999999999999999999987  56788888887764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.54  E-value=1.2e-15  Score=121.46  Aligned_cols=125  Identities=14%  Similarity=0.102  Sum_probs=62.6

Q ss_pred             ccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC-----CCcEEEEcCccccccc------c---cccC
Q 029613           13 QESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR-----GKLSYILDGDNLRHGL------N---KNLG   78 (190)
Q Consensus        13 ~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~-----~~g~i~~~g~~~~~~~------~---~~i~   78 (190)
                      +.+.+.+++++||++++|++++|+||||||||||+++|+|.+...     .....++..+.+...+      .   ....
T Consensus         8 ~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~   87 (245)
T 2jeo_A            8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYN   87 (245)
T ss_dssp             ---------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCC
T ss_pred             cCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCC
Confidence            345678999999999999999999999999999999999976211     0111133322332110      0   0011


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHcCcceeecccCccHHHHH-HHHHhCCCCCeEEEEeeCCchhhh
Q 029613           79 FSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRD-ACRAMLPDSNFIEVFMNMPLELCE  142 (190)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~-iarall~~~~il~vllDEP~~~ld  142 (190)
                      +...+.. ....+.+....+. ......+..+|+|++||. + ++++.+|+++  ++|||....+
T Consensus        88 ~~~~~~~-~~~~~~~~L~~l~-~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~l--ilDg~~~~~~  147 (245)
T 2jeo_A           88 FDHPDAF-DNDLMHRTLKNIV-EGKTVEVPTYDFVTHSRLPE-TTVVYPADVV--LFEGILVFYS  147 (245)
T ss_dssp             TTSGGGB-CHHHHHHHHHHHH-TTCCEEECCEETTTTEECSS-CEEECCCSEE--EEECTTTTTS
T ss_pred             CCCcccc-cHHHHHHHHHHHH-CCCCeecccccccccCccCc-eEEecCCCEE--EEeCcccccc
Confidence            1111100 0111111111121 233345677999999984 5 5778889999  9999987643

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.54  E-value=5.7e-17  Score=131.40  Aligned_cols=109  Identities=18%  Similarity=0.143  Sum_probs=57.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-cccccCCChhhH--------------------HHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-LNKNLGFSAEDR--------------------TENIRR   90 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-~~~~i~~~~~~~--------------------~~~~~~   90 (190)
                      .++|+||||||||||+++|+|+. .+.+|.+.++|.++... ....+++..++.                    ......
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~-~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~   82 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ-VSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP   82 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH-C------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC-CCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence            58999999999999999999987 77889998888654221 011112222110                    000001


Q ss_pred             HHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHH
Q 029613           91 VGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGL  149 (190)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~  149 (190)
                      +..   .....-....+..+|+||+|| .+||+++.   ++  +||||+++|++.+.+.+
T Consensus        83 i~~---~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---ll--lldep~~gL~~lD~~~l  134 (270)
T 3sop_A           83 IEK---YINEQYEKFLKEEVNIARKKRIPDTRVHCC---LY--FISPTGHSLRPLDLEFM  134 (270)
T ss_dssp             HHH---HHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EE--EECCCSSSCCHHHHHHH
T ss_pred             HHH---HHHHHHHhhhHHhcCcccchhhhhheeeee---eE--EEecCCCcCCHHHHHHH
Confidence            111   111000112345799999999 59998764   77  99999999988774433

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.51  E-value=7.4e-15  Score=133.84  Aligned_cols=115  Identities=11%  Similarity=0.085  Sum_probs=76.9

Q ss_pred             CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHH
Q 029613           15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEV   94 (190)
Q Consensus        15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~   94 (190)
                      ++..++++++|+   |++++|+|||||||||++|+|+|+...+..|.+.- ..      ...+++.++            
T Consensus       564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-a~------~~~i~~v~~------------  621 (765)
T 1ewq_A          564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-AE------EAHLPLFDG------------  621 (765)
T ss_dssp             TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-SS------EEEECCCSE------------
T ss_pred             CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-hh------ccceeeHHH------------
Confidence            345688999999   99999999999999999999999863234443221 10      111233221            


Q ss_pred             HHHHHHcCcce-eecccCccHHHH-HHHHHh--CCCCCeEEEEeeCC---chhhhhcCh-HHHHHHHHc
Q 029613           95 AKLFADAGLIC-IASLISPYRKDR-DACRAM--LPDSNFIEVFMNMP---LELCEARDP-KGLYKLARA  155 (190)
Q Consensus        95 ~~~~~~~~~~~-~~~~lS~g~kqr-~iaral--l~~~~il~vllDEP---~~~ld~~~~-~~~~~~~~~  155 (190)
                        ++...++.+ +...+|.+++++ .+++++  +.+|+++  +||||   |+++|.... ..+.+.+.+
T Consensus       622 --i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~Ll--LLDEpgrGTs~lD~~~~~~~i~~~L~~  686 (765)
T 1ewq_A          622 --IYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLV--LLDEVGRGTSSLDGVAIATAVAEALHE  686 (765)
T ss_dssp             --EEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEE--EEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             --hhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEE--EEECCCCCCCCcCHHHHHHHHHHHHHh
Confidence              011112111 122367788888 588888  9999999  99999   999998765 457766665

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.50  E-value=1.7e-14  Score=117.52  Aligned_cols=123  Identities=14%  Similarity=0.031  Sum_probs=70.0

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCc--EEEEcCcccccccccc-----cCCChhh---HH
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKL--SYILDGDNLRHGLNKN-----LGFSAED---RT   85 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g--~i~~~g~~~~~~~~~~-----i~~~~~~---~~   85 (190)
                      +.++|+++++.+++|++++|+|+||||||||++.|++.+. +.+|  .+++.++.-.......     .+.....   ..
T Consensus        21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~   99 (296)
T 1cr0_A           21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-TAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLK   99 (296)
T ss_dssp             SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-HTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHH
T ss_pred             CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccc
Confidence            3568999999999999999999999999999999999884 3334  4455543211100000     0111000   00


Q ss_pred             -HHHH--HHHHH-HHHHHHcCc--ceeecccCccH-HHHHHHHHhCCCCCeEEEEeeCCchhh
Q 029613           86 -ENIR--RVGEV-AKLFADAGL--ICIASLISPYR-KDRDACRAMLPDSNFIEVFMNMPLELC  141 (190)
Q Consensus        86 -~~~~--~~~~~-~~~~~~~~~--~~~~~~lS~g~-kqr~iarall~~~~il~vllDEP~~~l  141 (190)
                       ..+.  ...+. ..++....+  ...+..++.++ +|+..++++..+|+++  ++|||++.+
T Consensus       100 ~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~ll--ilDept~~~  160 (296)
T 1cr0_A          100 REIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVI--ILDHISIVV  160 (296)
T ss_dssp             HHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEE--EEEEEC---
T ss_pred             cCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEE--EEcCccccC
Confidence             0000  00111 111211122  11123466666 5555688899999999  999999944

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.50  E-value=6.1e-15  Score=137.98  Aligned_cols=129  Identities=13%  Similarity=-0.051  Sum_probs=80.4

Q ss_pred             ccccCc-----ceecc-CccccccccccccCC-------ccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEcCcc-
Q 029613            4 VGNSTN-----IFWQE-SPIGRLERQKLLNQK-------GCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILDGDN-   68 (190)
Q Consensus         4 ~l~~~~-----l~~~~-~~~~~l~~~sl~i~~-------Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~g~~-   68 (190)
                      +|++++     +++.| ++..++++++|.+.+       |++++|+|||||||||++|++ |++.. ...|.+...... 
T Consensus       750 ~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq~~~~  828 (1022)
T 2o8b_B          750 FLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPAEVCR  828 (1022)
T ss_dssp             CEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEESSEEE
T ss_pred             eEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEeccCcCC
Confidence            678888     88888 667899999999987       999999999999999999999 87731 123322222110 


Q ss_pred             --cccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcCh
Q 029613           69 --LRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDP  146 (190)
Q Consensus        69 --~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~  146 (190)
                        +...+...++..     +.+.               .-...++.++++..+|++++.+|+++  +||||++++|+.+.
T Consensus       829 l~v~d~I~~rig~~-----d~~~---------------~~~stf~~em~~~a~al~la~~~sLl--LLDEp~~Gtd~~dg  886 (1022)
T 2o8b_B          829 LTPIDRVFTRLGAS-----DRIM---------------SGESTFFVELSETASILMHATAHSLV--LVDELGRGTATFDG  886 (1022)
T ss_dssp             ECCCSBEEEECC-----------------------------CHHHHHHHHHHHHHHHCCTTCEE--EEECTTTTSCHHHH
T ss_pred             CCHHHHHHHHcCCH-----HHHh---------------hchhhhHHHHHHHHHHHHhCCCCcEE--EEECCCCCCChHHH
Confidence              000000011110     0000               01123456666667999999999999  99999999998874


Q ss_pred             -HHHHHHHHc
Q 029613          147 -KGLYKLARA  155 (190)
Q Consensus       147 -~~~~~~~~~  155 (190)
                       ..+++.++.
T Consensus       887 ~~~~~~il~~  896 (1022)
T 2o8b_B          887 TAIANAVVKE  896 (1022)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence             334555543

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.49  E-value=2.8e-14  Score=111.17  Aligned_cols=61  Identities=18%  Similarity=0.115  Sum_probs=43.6

Q ss_pred             cccCcceeccCccccccccc-cccCCccEEEEECCCCCcHHHHHHHHHHHHhh-C-----CCcEEEEcCcc
Q 029613            5 GNSTNIFWQESPIGRLERQK-LLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-R-----GKLSYILDGDN   68 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~s-l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~-----~~g~i~~~g~~   68 (190)
                      ++++.++..+.   .|+.+- =.+++|++++|+||||||||||+++|+|.+.. +     +.+.++++++.
T Consensus         2 ~~~~~i~tG~~---~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~   69 (231)
T 4a74_A            2 ATIGRISTGSK---SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN   69 (231)
T ss_dssp             CCCCEECCSCH---HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CcCCccCCCCh---hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence            45666655443   333322 37899999999999999999999999997632 2     34477777654

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.49  E-value=4e-15  Score=115.42  Aligned_cols=36  Identities=25%  Similarity=0.251  Sum_probs=25.5

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+++++  .++++|++++|+||||||||||+|+|+|++
T Consensus         9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A            9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ------------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            456777  799999999999999999999999999987

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.49  E-value=1.1e-13  Score=116.19  Aligned_cols=49  Identities=12%  Similarity=-0.006  Sum_probs=44.4

Q ss_pred             ec-ccCccHHHH-HHHHHhC---------CCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          107 AS-LISPYRKDR-DACRAML---------PDSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       107 ~~-~lS~g~kqr-~iarall---------~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      +. .+|+||+|+ .+|++++         .+|+++  +|||||++||+..++.+++.+.+..
T Consensus       262 ~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iL--LLDEp~s~LD~~~~~~l~~~l~~~~  321 (359)
T 2o5v_A          262 ASDYASRGEGRTVALALRRAELELLREKFGEDPVL--LLDDFTAELDPHRRQYLLDLAASVP  321 (359)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEE--EECCGGGCCCHHHHHHHHHHHHHSS
T ss_pred             hhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEE--EEeCccccCCHHHHHHHHHHHHhcC
Confidence            44 699999999 6999999         899999  9999999999999999999998743

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.48  E-value=6.8e-15  Score=136.11  Aligned_cols=115  Identities=15%  Similarity=0.063  Sum_probs=73.5

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc----cccccCCChhhHHHHHHHH
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG----LNKNLGFSAEDRTENIRRV   91 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~----~~~~i~~~~~~~~~~~~~~   91 (190)
                      +..++++++|++++|++++|+|||||||||++|+++++......|. ++........    +-..++     ..+.    
T Consensus       659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~-~vpa~~~~i~~~d~i~~~ig-----~~d~----  728 (918)
T 3thx_B          659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS-YVPAEEATIGIVDGIFTRMG-----AADN----  728 (918)
T ss_dssp             SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC-CBSSSEEEEECCSEEEEEC--------------
T ss_pred             CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc-cccchhhhhhHHHHHHHhCC-----hHHH----
Confidence            4568899999999999999999999999999999987642111111 1111100000    000000     0000    


Q ss_pred             HHHHHHHHHcCcceeecccCccHHHHH-HHHHhCCCCCeEEEEeeCCchhhhhcChHHHH-HHHH
Q 029613           92 GEVAKLFADAGLICIASLISPYRKDRD-ACRAMLPDSNFIEVFMNMPLELCEARDPKGLY-KLAR  154 (190)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~lS~g~kqr~-iarall~~~~il~vllDEP~~~ld~~~~~~~~-~~~~  154 (190)
                                 +......+|++++|+. ++++ +.+|+++  +||||++++|+.+...+. +.++
T Consensus       729 -----------l~~~~stfs~em~~~~~il~~-a~~p~Ll--LLDEP~~GlD~~~~~~i~~~il~  779 (918)
T 3thx_B          729 -----------IYKGRSTFMEELTDTAEIIRK-ATSQSLV--ILDELGRGTSTHDGIAIAYATLE  779 (918)
T ss_dssp             ----------------CCHHHHHHHHHHHHHH-CCTTCEE--EEESTTTTSCHHHHHHHHHHHHH
T ss_pred             -----------HHHhHHHhhHHHHHHHHHHHh-ccCCCEE--EEeCCCCCCCHHHHHHHHHHHHH
Confidence                       0011345678888885 6666 8899999  999999999999877765 4443

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.47  E-value=3.9e-13  Score=111.89  Aligned_cols=49  Identities=8%  Similarity=0.125  Sum_probs=43.6

Q ss_pred             ecccCccHHH------H-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          107 ASLISPYRKD------R-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       107 ~~~lS~g~kq------r-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      +..+|+||+|      | ++|++++.+|+++  +|||||++||+..+..+++.+++-.
T Consensus       246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~l--llDEp~~~LD~~~~~~l~~~l~~~~  301 (339)
T 3qkt_A          246 LTFLSGGERIALGLAFRLAMSLYLAGEISLL--ILDEPTPYLDEERRRKLITIMERYL  301 (339)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEE--EEECCCTTCCHHHHHHHHHHHHHTG
T ss_pred             hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEE--EEECCCCCCCHHHHHHHHHHHHHHH
Confidence            5679999999      4 5889999999999  9999999999999999999887643

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.45  E-value=1.6e-12  Score=114.66  Aligned_cols=154  Identities=43%  Similarity=0.706  Sum_probs=110.5

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceee
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIA  107 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (190)
                      +.+.+++|+|++||||||+++.|+..+...|....+++++.+...+....+|...++..++..+..+...+...+...+.
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI~  449 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVIC  449 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            45789999999999999999999987755555567888887765554445666666665555555444444455655555


Q ss_pred             cccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEecC
Q 029613          108 SLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKI  182 (190)
Q Consensus       108 ~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~  182 (190)
                      ...+..+..|..++.++.+++++.|+||.|...+-.|..+..+...+.+.++.+.++... |++|..|+++||--
T Consensus       450 d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~-~e~~~~adivIDts  523 (546)
T 2gks_A          450 ALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDP-YEPPVAPEVRVDTT  523 (546)
T ss_dssp             ECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBC-CCCCSSCSEEEETT
T ss_pred             EcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhc-cccccCCcEEEECC
Confidence            555666777777888887777666799999999998887777765445667777788888 99888999999863

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.44  E-value=2e-13  Score=114.60  Aligned_cols=112  Identities=15%  Similarity=0.101  Sum_probs=68.6

Q ss_pred             cccccccc-------ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHH
Q 029613           18 GRLERQKL-------LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRR   90 (190)
Q Consensus        18 ~~l~~~sl-------~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~   90 (190)
                      ..++++++       ...+|++++|+||||||||||+++|+|.+.+...+.+...++++........++..+.       
T Consensus       104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~-------  176 (356)
T 3jvv_A          104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQR-------  176 (356)
T ss_dssp             CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEE-------
T ss_pred             CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeee-------
Confidence            44566665       6788899999999999999999999998854435656554444321111000000000       


Q ss_pred             HHHHHHHHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613           91 VGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                                    ...  .....-...++++|..+|+++  ++|||+   |....+.+.+....|+
T Consensus       177 --------------~~~--~~~~~~~~~La~aL~~~Pdvi--llDEp~---d~e~~~~~~~~~~~G~  222 (356)
T 3jvv_A          177 --------------EVH--RDTLGFSEALRSALREDPDII--LVGEMR---DLETIRLALTAAETGH  222 (356)
T ss_dssp             --------------EBT--TTBSCHHHHHHHHTTSCCSEE--EESCCC---SHHHHHHHHHHHHTTC
T ss_pred             --------------eec--cccCCHHHHHHHHhhhCcCEE--ecCCCC---CHHHHHHHHHHHhcCC
Confidence                          000  000011127999999999999  999999   3444455555555544

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.43  E-value=7.1e-14  Score=129.63  Aligned_cols=116  Identities=13%  Similarity=0.083  Sum_probs=68.0

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHH
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVA   95 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   95 (190)
                      ...++++++|++.+|++++|+|||||||||++|+++....-...|.. +......      ++....             
T Consensus       648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~-vpa~~~~------~~~~d~-------------  707 (934)
T 3thx_A          648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCF-VPCESAE------VSIVDC-------------  707 (934)
T ss_dssp             CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCC-BSEEEEE------EECCSE-------------
T ss_pred             ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCc-ccccccc------chHHHH-------------
Confidence            34678899999999999999999999999999999544321111110 0000000      000000             


Q ss_pred             HHHHHcCcc-eeecccCccHHHH-HHHHHh--CCCCCeEEEEeeCCchhhhhcChHHH-HHHHH
Q 029613           96 KLFADAGLI-CIASLISPYRKDR-DACRAM--LPDSNFIEVFMNMPLELCEARDPKGL-YKLAR  154 (190)
Q Consensus        96 ~~~~~~~~~-~~~~~lS~g~kqr-~iaral--l~~~~il~vllDEP~~~ld~~~~~~~-~~~~~  154 (190)
                       ++...+.. .....+|.++.++ .+++++  +.+|+++  +||||++++|+.+...+ ++.++
T Consensus       708 -i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLl--LLDEp~~GlD~~~~~~i~~~il~  768 (934)
T 3thx_A          708 -ILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLI--IIDELGRGTSTYDGFGLAWAISE  768 (934)
T ss_dssp             -EEEECC---------CHHHHHHHHHHHHHHHCCTTCEE--EEESCSCSSCHHHHHHHHHHHHH
T ss_pred             -HHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEE--EEeCCCCCCCHHHHHHHHHHHHH
Confidence             00001110 0112345655555 355555  8999999  99999999999887666 44433

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.40  E-value=3.7e-14  Score=121.35  Aligned_cols=63  Identities=19%  Similarity=0.230  Sum_probs=53.6

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      .+.++++.+.|+...+++++ +. .+|++++|+||||||||||+++|+|.+ .+.+|.|.+.++++
T Consensus       143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l-~~~~g~I~~~ed~i  205 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQEL-NSSERNILTVEDPI  205 (418)
T ss_dssp             CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHH-CCTTSCEEEEESSC
T ss_pred             CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEEecccc
Confidence            46778888888777789998 54 899999999999999999999999988 56678888877665

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.39  E-value=4.2e-13  Score=104.34  Aligned_cols=50  Identities=16%  Similarity=0.208  Sum_probs=40.1

Q ss_pred             cccccccccc-ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613           16 PIGRLERQKL-LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD   65 (190)
Q Consensus        16 ~~~~l~~~sl-~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~   65 (190)
                      +.+.|+++.. .+.+|++++|+||||||||||++.|++.+.+.+...++++
T Consensus         8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~   58 (235)
T 2w0m_A            8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT   58 (235)
T ss_dssp             SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            4678899998 8999999999999999999999999987743333333443

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.39  E-value=1.1e-14  Score=112.13  Aligned_cols=119  Identities=14%  Similarity=0.131  Sum_probs=70.7

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCChhhHHHHHHHHHHHHHHHHHc------
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSAEDRTENIRRVGEVAKLFADA------  101 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------  101 (190)
                      |++++|+||||||||||+++|+|.+ + .+| +.++|.....  .....+++..++.......+..+  .+...      
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~-~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~~--~~~~~~~~~~~   75 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVL-K-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRV--GLEPPPGKREC   75 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHH-H-HTT-CCCEEEECCEEETTSSEEEEEEEETTSCEEEEEEC--CCCCCSSSCCE
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhc-c-cCC-EEEcCEecchhHhhhceEEEEEEecccceehhhcc--cccCCcccccc
Confidence            7899999999999999999999988 4 567 7777654421  11222333333210000000000  00000      


Q ss_pred             CcceeecccCccHHHH--HHHH---HhCCCCCeEEEEeeC--CchhhhhcChHHHHHHHHc
Q 029613          102 GLICIASLISPYRKDR--DACR---AMLPDSNFIEVFMNM--PLELCEARDPKGLYKLARA  155 (190)
Q Consensus       102 ~~~~~~~~lS~g~kqr--~iar---all~~~~il~vllDE--P~~~ld~~~~~~~~~~~~~  155 (190)
                      .+..+...+|++++++  .+.+   |++.+|+++  +|||  |++.+|....+.+.+.+..
T Consensus        76 ~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvl--ilDE~g~~~~~~~~~~~~l~~~l~~  134 (189)
T 2i3b_A           76 RVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVC--VIDEIGKMELFSQLFIQAVRQTLST  134 (189)
T ss_dssp             ESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCE--EECCCSTTTTTCSHHHHHHHHHHHC
T ss_pred             ccceEEEcchHHHHHHHHHHhhhhHhhccCCCEE--EEeCCCccccccHHHHHHHHHHHhC
Confidence            0111233467777766  2344   578899999  9999  8888877766777766664

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.37  E-value=5.7e-13  Score=112.41  Aligned_cols=93  Identities=18%  Similarity=0.174  Sum_probs=62.2

Q ss_pred             cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHH
Q 029613           19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLF   98 (190)
Q Consensus        19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   98 (190)
                      ++++++  +++|++++|+|||||||||++++|+|.+.+..+|.|.+.++++.......+++..+.               
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~---------------  189 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR---------------  189 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE---------------
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee---------------
Confidence            455544  789999999999999999999999998843337888766655432122222222221               


Q ss_pred             HHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCc
Q 029613           99 ADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPL  138 (190)
Q Consensus        99 ~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~  138 (190)
                       ..+..  +..+     ...+++++..+|+++  ++|||+
T Consensus       190 -~~g~~--~~~~-----~~~l~~~L~~~pd~i--lldE~~  219 (372)
T 2ewv_A          190 -EVGED--TKSF-----ADALRAALREDPDVI--FVGEMR  219 (372)
T ss_dssp             -EBTTT--BSCS-----HHHHHHHTTSCCSEE--EESCCC
T ss_pred             -ecCCC--HHHH-----HHHHHHHhhhCcCEE--EECCCC
Confidence             01110  1111     236899999999999  999998

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.37  E-value=2.9e-13  Score=123.94  Aligned_cols=115  Identities=15%  Similarity=0.060  Sum_probs=70.0

Q ss_pred             CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChh-----hHHHHHH
Q 029613           15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAE-----DRTENIR   89 (190)
Q Consensus        15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~-----~~~~~~~   89 (190)
                      +...++++++|+ ++|++++|+|||||||||++|+|+|+......|.. +....      ..+++..+     ...+++.
T Consensus       593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vpa~~------~~i~~~~~i~~~~~~~d~l~  664 (800)
T 1wb9_A          593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPAQK------VEIGPIDRIFTRVGAADDLA  664 (800)
T ss_dssp             SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSSSE------EEECCCCEEEEEEC------
T ss_pred             CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cchhc------ccceeHHHHHhhCCHHHHHH
Confidence            345688999999 99999999999999999999999997532222211 11110      01111111     0011110


Q ss_pred             HHHHHHHHHHHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHH-HHHHH
Q 029613           90 RVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGL-YKLAR  154 (190)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~-~~~~~  154 (190)
                      .           +    ...++.++++...+...+.+|+++  +||||++++|+.+...+ ++.++
T Consensus       665 ~-----------~----~stf~~e~~~~~~il~~a~~psLl--LLDEp~~Gtd~~d~~~i~~~ll~  713 (800)
T 1wb9_A          665 S-----------G----RSTFMVEMTETANILHNATEYSLV--LMDEIGRGTSTYDGLSLAWACAE  713 (800)
T ss_dssp             --------------------CHHHHHHHHHHHHHCCTTEEE--EEESCCCCSSSSHHHHHHHHHHH
T ss_pred             h-----------h----hhhhhHHHHHHHHHHHhccCCCEE--EEECCCCCCChhHHHHHHHHHHH
Confidence            0           0    112345555555555668999999  99999888888776654 44444

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.37  E-value=2.9e-14  Score=121.96  Aligned_cols=47  Identities=23%  Similarity=0.015  Sum_probs=38.2

Q ss_pred             CcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613            2 ATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus         2 ~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..+++++|+++.|+.+.++++++|.+      +|+|+||||||||+++|+|..
T Consensus         9 ~~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C            9 EGYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             ------CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCC
T ss_pred             cCcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCC
Confidence            34789999999999999999999997      999999999999999999965

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.33  E-value=2.2e-14  Score=117.72  Aligned_cols=51  Identities=24%  Similarity=0.102  Sum_probs=22.2

Q ss_pred             CcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHH-HhhCCCcEEEEcC
Q 029613            8 TNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKE-LYSRGKLSYILDG   66 (190)
Q Consensus         8 ~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~-l~~~~~g~i~~~g   66 (190)
                      +|+++.|+.+.++++++|++      +|+|+||||||||++.|.|. + .+.+| +.++|
T Consensus         2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~-~~~~g-i~~~g   53 (301)
T 2qnr_A            2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL-YPERV-ISGAA   53 (301)
T ss_dssp             ----------------CEEE------EEEEETTSSHHHHHHHHHC---------------
T ss_pred             CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCc-cCCCC-cccCC
Confidence            57899999999999999988      99999999999999999986 4 34444 44333

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.32  E-value=5.1e-13  Score=112.12  Aligned_cols=125  Identities=14%  Similarity=0.017  Sum_probs=71.4

Q ss_pred             cccccccccCC--ccEEEEECCCCCcHHHHHHHHHHHHhhCCC----cEEEEc----CcccccccccccCCChhhHHHHH
Q 029613           19 RLERQKLLNQK--GCVVWITGLSGSGKSTLAFSVNKELYSRGK----LSYILD----GDNLRHGLNKNLGFSAEDRTENI   88 (190)
Q Consensus        19 ~l~~~sl~i~~--Geii~L~G~nGsGKSTLlr~l~g~l~~~~~----g~i~~~----g~~~~~~~~~~i~~~~~~~~~~~   88 (190)
                      +.+.+++.+.+  |+.++|+|+||||||||+++|+|++ .+..    |.++++    +.++        .+...+. ..+
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~-~~~~~~e~G~i~i~~~~~~~~~--------~~~~~~~-~~I  226 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF-NTTSAWEYGREFVFEKLGGDEQ--------AMQYSDY-PQM  226 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT-TCEEECCTTHHHHHHSSSSCTT--------SSCTTTH-HHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh-CCCcchhhHHHHHHhhcCCCcc--------cCChhHH-HHH
Confidence            35679999999  9999999999999999999999987 5555    555542    2221        1222222 122


Q ss_pred             HHHHHHHHHHHH--cCccee---------ecccCccHHHHH-HHHHh-CCCCCeEEEEeeC---Cc------hhhhhcCh
Q 029613           89 RRVGEVAKLFAD--AGLICI---------ASLISPYRKDRD-ACRAM-LPDSNFIEVFMNM---PL------ELCEARDP  146 (190)
Q Consensus        89 ~~~~~~~~~~~~--~~~~~~---------~~~lS~g~kqr~-iaral-l~~~~il~vllDE---P~------~~ld~~~~  146 (190)
                      ..+.+-...+..  .....+         +...+.+.+++. +++++ ..+|+++  +|||   |+      .++|++.+
T Consensus       227 ~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ll--lLdE~~~p~~~~g~~~sld~~~r  304 (365)
T 1lw7_A          227 ALGHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVT--ILLKNNTEWVDDGLRSLGSQKQR  304 (365)
T ss_dssp             HHHHHHHHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEE--EEEECCCC-----------CCSH
T ss_pred             HHHHHHHHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEE--EECCCCCCcccCCCcCCccHHHH
Confidence            222211111111  111111         111223334444 55544 3588998  9999   65      47899999


Q ss_pred             HHHHHHHHc
Q 029613          147 KGLYKLARA  155 (190)
Q Consensus       147 ~~~~~~~~~  155 (190)
                      ..+...+++
T Consensus       305 ~~l~~~l~~  313 (365)
T 1lw7_A          305 QQFQQLLKK  313 (365)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888743

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.32  E-value=6.3e-12  Score=107.51  Aligned_cols=147  Identities=13%  Similarity=0.098  Sum_probs=83.2

Q ss_pred             cccCcceeccCccccccccccccCCccE--EEEECCCCCcHHHHHHHHHHHHh---hCC---Cc------EEEEcCcccc
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCV--VWITGLSGSGKSTLAFSVNKELY---SRG---KL------SYILDGDNLR   70 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Gei--i~L~G~nGsGKSTLlr~l~g~l~---~~~---~g------~i~~~g~~~~   70 (190)
                      +++++ ++.|++.+ ++++||++++|++  ++|+|+||||||||+++|+|...   ...   .+      .+.+....+.
T Consensus        17 l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~   94 (427)
T 2qag_B           17 VPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVR   94 (427)
T ss_dssp             CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CE
T ss_pred             EEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccc
Confidence            56777 89998888 9999999999999  99999999999999999999631   000   11      0111211111


Q ss_pred             --cccccccCCChh--h---HHHHHHHHH-HHHHHHHHc-Ccc------------eeeccc-----CccHHHHHHHHHhC
Q 029613           71 --HGLNKNLGFSAE--D---RTENIRRVG-EVAKLFADA-GLI------------CIASLI-----SPYRKDRDACRAML  124 (190)
Q Consensus        71 --~~~~~~i~~~~~--~---~~~~~~~~~-~~~~~~~~~-~~~------------~~~~~l-----S~g~kqr~iarall  124 (190)
                        ..+...+++...  .   .......+. ++...+... +..            ..+..+     +....+.++++++.
T Consensus        95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~  174 (427)
T 2qag_B           95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD  174 (427)
T ss_dssp             EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC
T ss_pred             cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence              111122233211  0   111111111 222222222 111            011111     12223457999999


Q ss_pred             CCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          125 PDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       125 ~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      ...+++  ++|+|++.|.+.....+.+.+++
T Consensus       175 ~~~~vI--~Vi~KtD~Lt~~E~~~l~~~I~~  203 (427)
T 2qag_B          175 SKVNII--PIIAKADAISKSELTKFKIKITS  203 (427)
T ss_dssp             SCSEEE--EEESCGGGSCHHHHHHHHHHHHH
T ss_pred             hCCCEE--EEEcchhccchHHHHHHHHHHHH
Confidence            888998  99999999988888888888875

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.31  E-value=5.5e-14  Score=125.48  Aligned_cols=139  Identities=14%  Similarity=0.088  Sum_probs=69.3

Q ss_pred             ccccCcceeccCcc--cccccc----------ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613            4 VGNSTNIFWQESPI--GRLERQ----------KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH   71 (190)
Q Consensus         4 ~l~~~~l~~~~~~~--~~l~~~----------sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~   71 (190)
                      ++++.|+++.|+..  ++++.+          +++++.   ++|+|+||||||||+++|+|++.+.++|.|.++|.++..
T Consensus        10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~   86 (608)
T 3szr_A           10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL   86 (608)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence            46788999999642  344333          355544   999999999999999999997633379999999877521


Q ss_pred             -------ccccccCCChhhH-----HHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCC-
Q 029613           72 -------GLNKNLGFSAEDR-----TENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMP-  137 (190)
Q Consensus        72 -------~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP-  137 (190)
                             ..+..++|.+++.     ......+......+...+.     ..|   ++. .++.+....|+++  ++||| 
T Consensus        87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~-----~~s---~~~i~l~i~~~~~p~Ll--LlDePG  156 (608)
T 3szr_A           87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGM-----GIS---HELITLEISSRDVPDLT--LIDLPG  156 (608)
T ss_dssp             EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSS-----CCC---SCCEEEEEEESSSCCEE--EEECCC
T ss_pred             ecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCcc-----ccc---hHHHHHHhcCCCCCcee--EeeCCC
Confidence                   2334456655431     0101111111111111110     001   011 1223334578888  99999 


Q ss_pred             -----chhhhhcChHHHHHHHHc
Q 029613          138 -----LELCEARDPKGLYKLARA  155 (190)
Q Consensus       138 -----~~~ld~~~~~~~~~~~~~  155 (190)
                           |+++|+...+.+.+++++
T Consensus       157 i~~~~t~~LD~~~~~~i~~li~~  179 (608)
T 3szr_A          157 ITRVAVGNQPADIGYKIKTLIKK  179 (608)
T ss_dssp             ------CCSSCSHHHHHHHHHHH
T ss_pred             ccccccCCCCHHHHHHHHHHHHH
Confidence                 999999888888888776

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.31  E-value=7e-13  Score=111.38  Aligned_cols=123  Identities=13%  Similarity=0.010  Sum_probs=78.9

Q ss_pred             ccCcceec---cCc--cccc---------cccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc-cc
Q 029613            6 NSTNIFWQ---ESP--IGRL---------ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN-LR   70 (190)
Q Consensus         6 ~~~~l~~~---~~~--~~~l---------~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~-~~   70 (190)
                      ++++++++   |+.  ..++         ++++|.+++|++++|+||||||||||+++|+|++ ++.+|.|.++|.. +.
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~-~~~~g~I~ie~~~e~~  215 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI-PFDQRLITIEDVPELF  215 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS-CTTSCEEEEESSSCCC
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC-CCCceEEEECCccccC
Confidence            67788877   753  2344         9999999999999999999999999999999977 6789999998642 11


Q ss_pred             cc-cccccCCCh-hhHHHHHHHHHHHHHHHHHcCcceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChH
Q 029613           71 HG-LNKNLGFSA-EDRTENIRRVGEVAKLFADAGLICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPK  147 (190)
Q Consensus        71 ~~-~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~  147 (190)
                      .. ....+++.. ++..  .                    ..+++..++ .++.++...|+.+  +++|+....    ..
T Consensus       216 ~~~~~~~v~~v~~q~~~--~--------------------~~~~~~t~~~~i~~~l~~~pd~~--l~~e~r~~~----~~  267 (361)
T 2gza_A          216 LPDHPNHVHLFYPSEAK--E--------------------EENAPVTAATLLRSCLRMKPTRI--LLAELRGGE----AY  267 (361)
T ss_dssp             CTTCSSEEEEECC--------------------------------CCHHHHHHHHTTSCCSEE--EESCCCSTH----HH
T ss_pred             ccccCCEEEEeecCccc--c--------------------ccccccCHHHHHHHHHhcCCCEE--EEcCchHHH----HH
Confidence            10 111122222 1100  0                    001233455 4777777888888  899987531    22


Q ss_pred             HHHHHHHcCC
Q 029613          148 GLYKLARAGK  157 (190)
Q Consensus       148 ~~~~~~~~~~  157 (190)
                      .+.+.+..|+
T Consensus       268 ~~l~~l~~g~  277 (361)
T 2gza_A          268 DFINVAASGH  277 (361)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHhcCC
Confidence            3444455554

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.31  E-value=3.3e-13  Score=112.44  Aligned_cols=65  Identities=17%  Similarity=0.091  Sum_probs=58.5

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      +++++++++.|+...++++++|++.+|++++|+|+||||||||+++|+|.+ .+..|.+.+.+.++
T Consensus        29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~-~~~~g~v~i~~~d~   93 (337)
T 2qm8_A           29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL-TAAGHKVAVLAVDP   93 (337)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEEECG
T ss_pred             HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh-hhCCCEEEEEEEcC
Confidence            578999999998888999999999999999999999999999999999988 55677888777655

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.31  E-value=1.5e-11  Score=99.29  Aligned_cols=105  Identities=14%  Similarity=0.186  Sum_probs=64.0

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC----------Cc-EEEEcCcccccccccccCCChhhHHHHHHHHH--
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG----------KL-SYILDGDNLRHGLNKNLGFSAEDRTENIRRVG--   92 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~----------~g-~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~--   92 (190)
                      .+.+|++++|+||||||||||++.+++.+ ..+          .+ .+++..++..           ......+..+.  
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~-~~g~~~~g~~~~~~~~v~~~~~e~~~-----------~~~~~r~~~~g~~   93 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQI-AGGPDLLEVGELPTGPVIYLPAEDPP-----------TAIHHRLHALGAH   93 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHH-HTCCCTTCCCCCCCCCEEEEESSSCH-----------HHHHHHHHHHHTT
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHH-hcCCCcCCCccCCCccEEEEECCCCH-----------HHHHHHHHHHHhh
Confidence            57899999999999999999999999977 443          11 2233322211           11111111111  


Q ss_pred             ----HHHHHHHHcCcce----eecccCccHHHHHHHHHhCCCCCeEEEEeeCCch--hhhhcCh
Q 029613           93 ----EVAKLFADAGLIC----IASLISPYRKDRDACRAMLPDSNFIEVFMNMPLE--LCEARDP  146 (190)
Q Consensus        93 ----~~~~~~~~~~~~~----~~~~lS~g~kqr~iarall~~~~il~vllDEP~~--~ld~~~~  146 (190)
                          ....++....+..    .+..+|+++.++  +++++.+|+++  ++|||++  ++|....
T Consensus        94 ~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~--i~~l~~~~~li--vlDe~~~~~~~d~~~~  153 (279)
T 1nlf_A           94 LSAEERQAVADGLLIQPLIGSLPNIMAPEWFDG--LKRAAEGRRLM--VLDTLRRFHIEEENAS  153 (279)
T ss_dssp             SCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHH--HHHHHTTCSEE--EEECGGGGCCSCTTCH
T ss_pred             cChhhhhhccCceEEeecCCCCcccCCHHHHHH--HHHhcCCCCEE--EECCHHHhcCCCcCch
Confidence                0111223333322    255678887554  56677789999  9999999  7876554

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.31  E-value=4.1e-12  Score=103.98  Aligned_cols=125  Identities=18%  Similarity=0.094  Sum_probs=79.4

Q ss_pred             ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHH
Q 029613            6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRT   85 (190)
Q Consensus         6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~   85 (190)
                      ..+++++.|+...  ++++|+  +|++++++|+||+||||+++.|++.+. +..+.+.+.+.++....          ..
T Consensus        78 ~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-~~~~~v~l~~~d~~~~~----------~~  142 (295)
T 1ls1_A           78 VYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPA----------AR  142 (295)
T ss_dssp             HHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-HTTCCEEEEECCSSCHH----------HH
T ss_pred             HHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEecCCcccHh----------HH
Confidence            3456777776543  788888  999999999999999999999999884 44566666655543211          00


Q ss_pred             HHHHHHHHHHHHHHHcCcceeec--ccCccHHHH-HHHHHhCCCCCeEEEEeeCC-chhhhhcChHHHHHHH
Q 029613           86 ENIRRVGEVAKLFADAGLICIAS--LISPYRKDR-DACRAMLPDSNFIEVFMNMP-LELCEARDPKGLYKLA  153 (190)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~--~lS~g~kqr-~iarall~~~~il~vllDEP-~~~ld~~~~~~~~~~~  153 (190)
                      +.+.      ......++..++.  ...+..-++ .++.+...+++++  ++|+| +.++|......+.+..
T Consensus       143 ~ql~------~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~v--iiDtpp~~~~d~~~~~~l~~~~  206 (295)
T 1ls1_A          143 EQLR------LLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLI--LVDTAGRLQIDEPLMGELARLK  206 (295)
T ss_dssp             HHHH------HHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEE--EEECCCCSSCCHHHHHHHHHHH
T ss_pred             HHHH------HhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEE--EEeCCCCccccHHHHHHHHHHh
Confidence            1111      1122334433322  233444455 4666666788999  99999 8888655444444433

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.30  E-value=1.9e-11  Score=94.02  Aligned_cols=114  Identities=26%  Similarity=0.287  Sum_probs=63.9

Q ss_pred             ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc---cccccCCChhh--HHHHHHHHHHHHHHH
Q 029613           24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG---LNKNLGFSAED--RTENIRRVGEVAKLF   98 (190)
Q Consensus        24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~---~~~~i~~~~~~--~~~~~~~~~~~~~~~   98 (190)
                      .+..++|++++|+|+|||||||++++|++.+     |.++++++++...   .....++..++  ....+..+.......
T Consensus        23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   97 (200)
T 4eun_A           23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDAR   97 (200)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHH
Confidence            3566789999999999999999999999976     5688998876431   11122333332  223333333332222


Q ss_pred             HHcCcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhc
Q 029613           99 ADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEAR  144 (190)
Q Consensus        99 ~~~~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~  144 (190)
                      ...+...++.........+..++.+...  +..|+||.|...+-.|
T Consensus        98 ~~~g~~viid~~~~~~~~~~~l~~~~~~--~~vv~l~~~~e~l~~R  141 (200)
T 4eun_A           98 ADAGVSTIITCSALKRTYRDVLREGPPS--VDFLHLDGPAEVIKGR  141 (200)
T ss_dssp             HHTTCCEEEEECCCCHHHHHHHTTSSSC--CEEEEEECCHHHHHHH
T ss_pred             HhcCCCEEEEchhhhHHHHHHHHHhCCc--eEEEEEeCCHHHHHHH
Confidence            2233222322222334555556555443  3334999998887544

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.29  E-value=5.8e-12  Score=95.64  Aligned_cols=102  Identities=19%  Similarity=0.193  Sum_probs=64.3

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccc--ccccCCChhhHHHHHH---HHHHHHHHHHH
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGL--NKNLGFSAEDRTENIR---RVGEVAKLFAD  100 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~--~~~i~~~~~~~~~~~~---~~~~~~~~~~~  100 (190)
                      .+++|++++|+|||||||||++++|++.   ++.|.++++++++....  ...+++.++.......   .+.........
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~   81 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAK   81 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhc
Confidence            4679999999999999999999999994   56788999998764321  1123455443221111   11111111111


Q ss_pred             cCc-------------------ceeecccCccHHHH-HHHHHhCCCCCeE
Q 029613          101 AGL-------------------ICIASLISPYRKDR-DACRAMLPDSNFI  130 (190)
Q Consensus       101 ~~~-------------------~~~~~~lS~g~kqr-~iarall~~~~il  130 (190)
                      .+.                   ...+..+|.+++|+ .++|++..+|+++
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l  131 (191)
T 1zp6_A           82 EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL  131 (191)
T ss_dssp             TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred             cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence            110                   00134588899999 5999999998864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.29  E-value=1e-13  Score=107.16  Aligned_cols=123  Identities=16%  Similarity=0.171  Sum_probs=69.4

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccc-------ccccCCChhhHHHHHHHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGL-------NKNLGFSAEDRTENIRRVGEVAKLFA   99 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~   99 (190)
                      .++|++++|+|+||||||||+++|+|++. +.  ..+++.+......       ...+.+..... .....+.+....+.
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~-~~--i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~   78 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLG-ER--VALLPMDHYYKDLGHLPLEERLRVNYDHPDA-FDLALYLEHAQALL   78 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHG-GG--EEEEEGGGCBCCCTTSCHHHHHHSCTTSGGG-BCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhC-CC--eEEEecCccccCcccccHHHhcCCCCCChhh-hhHHHHHHHHHHHH
Confidence            57899999999999999999999999873 21  1233322221100       00011110000 00111222222222


Q ss_pred             HcCcc-eeecccCccHH----HH-HHHHHhCCCCCeEEEEeeCCchh-------hhhcChHHHHHHHHc
Q 029613          100 DAGLI-CIASLISPYRK----DR-DACRAMLPDSNFIEVFMNMPLEL-------CEARDPKGLYKLARA  155 (190)
Q Consensus       100 ~~~~~-~~~~~lS~g~k----qr-~iarall~~~~il~vllDEP~~~-------ld~~~~~~~~~~~~~  155 (190)
                      ..... ..+..+|.|++    || .++++++.++.++  ++|||+++       ||......+...+++
T Consensus        79 ~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll--~~de~~~~~~d~~i~ld~~~~~~~~r~l~r  145 (211)
T 3asz_A           79 RGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILV--LYPKELRDLMDLKVFVDADADERFIRRLKR  145 (211)
T ss_dssp             TTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTT--TSSHHHHTTCSEEEEEECCHHHHHHHHHHH
T ss_pred             cCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhh--ccCHHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence            22222 22445777764    44 4788999999998  99999999       887766666665543

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.29  E-value=1.1e-11  Score=95.72  Aligned_cols=111  Identities=17%  Similarity=0.144  Sum_probs=69.4

Q ss_pred             cccccccccc-ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHH-H
Q 029613           16 PIGRLERQKL-LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVG-E   93 (190)
Q Consensus        16 ~~~~l~~~sl-~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~-~   93 (190)
                      +.+.|+++.. .+++|++++|+|+||||||||++.+++   ..+.+.++++.+.-         +......+...... .
T Consensus         5 G~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~---------~~~~~~~~~~~~~~~~   72 (220)
T 2cvh_A            5 GTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGG---------FSPERLVQMAETRGLN   72 (220)
T ss_dssp             SCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCC---------CCHHHHHHHHHTTTCC
T ss_pred             CcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCC---------CCHHHHHHHHHhcCCC
Confidence            3567778776 799999999999999999999999999   34566677765531         11111111111000 0


Q ss_pred             HHHHHHHcCcceeecccCccHH--HH-HHHHHhCCC-CCeEEEEeeCCchhhhhc
Q 029613           94 VAKLFADAGLICIASLISPYRK--DR-DACRAMLPD-SNFIEVFMNMPLELCEAR  144 (190)
Q Consensus        94 ~~~~~~~~~~~~~~~~lS~g~k--qr-~iarall~~-~~il~vllDEP~~~ld~~  144 (190)
                      ...+....    .+...+.++.  ++ +.+++++.+ |+++  ++|||++.++..
T Consensus        73 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~ll--iiD~~~~~l~~~  121 (220)
T 2cvh_A           73 PEEALSRF----ILFTPSDFKEQRRVIGSLKKTVDSNFALV--VVDSITAHYRAE  121 (220)
T ss_dssp             HHHHHHHE----EEECCTTTSHHHHHHHHHHHHCCTTEEEE--EEECCCCCTTGG
T ss_pred             hHHHhhcE----EEEecCCHHHHHHHHHHHHHHhhcCCCEE--EEcCcHHHhhhc
Confidence            00111111    1223444443  34 578889886 8888  999999998763

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.28  E-value=4.9e-12  Score=105.77  Aligned_cols=110  Identities=15%  Similarity=0.143  Sum_probs=70.9

Q ss_pred             ccccccc-ccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCC----CcE-EEEcCcccccccccccCCChhhHHHHHH
Q 029613           17 IGRLERQ-KLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRG----KLS-YILDGDNLRHGLNKNLGFSAEDRTENIR   89 (190)
Q Consensus        17 ~~~l~~~-sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~----~g~-i~~~g~~~~~~~~~~i~~~~~~~~~~~~   89 (190)
                      .+.|+.+ ++.+++|+++.|+||||||||||++.+++... ++.    .|. +++++++..         .++    .+.
T Consensus       117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---------~~~----~i~  183 (349)
T 1pzn_A          117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---------RPE----RIR  183 (349)
T ss_dssp             CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---------CHH----HHH
T ss_pred             CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---------CHH----HHH
Confidence            4556666 78999999999999999999999999999763 222    245 888876541         111    111


Q ss_pred             HHHHH-----HHHHHHcCcceeecc-cCccHHHH-HHHHHhC-------CCCCeEEEEeeCCchhhhhc
Q 029613           90 RVGEV-----AKLFADAGLICIASL-ISPYRKDR-DACRAML-------PDSNFIEVFMNMPLELCEAR  144 (190)
Q Consensus        90 ~~~~~-----~~~~~~~~~~~~~~~-lS~g~kqr-~iarall-------~~~~il~vllDEP~~~ld~~  144 (190)
                      .+.+-     ..+.+.   ..+... .+.++.|+ .++++++       .+|+++  ++|||++.+|+.
T Consensus       184 ~i~q~~~~~~~~v~~n---i~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~ll--IlDs~ta~ld~~  247 (349)
T 1pzn_A          184 EIAQNRGLDPDEVLKH---IYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLL--IVDSLTSHFRSE  247 (349)
T ss_dssp             HHHHTTTCCHHHHGGG---EEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEE--EEETSSTTHHHH
T ss_pred             HHHHHcCCCHHHHhhC---EEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEE--EEeCchHhhhhh
Confidence            11110     011111   112222 23455666 5777777       678999  999999999875

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.27  E-value=7.6e-13  Score=108.77  Aligned_cols=63  Identities=19%  Similarity=-0.018  Sum_probs=55.4

Q ss_pred             ccccCcceeccCcccccccccccc-------------------CCccEEEEECCCCCcHHHHHHHHHHHHhh--CCCcEE
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLN-------------------QKGCVVWITGLSGSGKSTLAFSVNKELYS--RGKLSY   62 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i-------------------~~Geii~L~G~nGsGKSTLlr~l~g~l~~--~~~g~i   62 (190)
                      +|+++++++.|.  ++++++++.+                   .+|++++|+|+||||||||+++|+|++ .  +.+|.+
T Consensus        37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l-~~~~~~G~i  113 (308)
T 1sq5_A           37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALL-SRWPEHRRV  113 (308)
T ss_dssp             TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHH-TTSTTCCCE
T ss_pred             ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHH-hhCCCCCeE
Confidence            688999999994  7899999988                   899999999999999999999999988 5  678888


Q ss_pred             EE---cCccc
Q 029613           63 IL---DGDNL   69 (190)
Q Consensus        63 ~~---~g~~~   69 (190)
                      .+   +|...
T Consensus       114 ~vi~~d~~~~  123 (308)
T 1sq5_A          114 ELITTDGFLH  123 (308)
T ss_dssp             EEEEGGGGBC
T ss_pred             EEEecCCccC
Confidence            87   76553

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.27  E-value=7e-12  Score=109.78  Aligned_cols=46  Identities=4%  Similarity=-0.178  Sum_probs=41.9

Q ss_pred             cc-CccHHHH-HHHHHhCCCC--CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          109 LI-SPYRKDR-DACRAMLPDS--NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       109 ~l-S~g~kqr-~iarall~~~--~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+ |||++|| .+|++++.+|  +++  +|||||++||......+++.+++.
T Consensus       396 ~l~SgG~~qrv~la~~l~~~~~~~~l--ilDEp~~gld~~~~~~i~~~l~~~  445 (517)
T 4ad8_A          396 DVASGGELSRVMLAVSTVLGADTPSV--VFDEVDAGIGGAAAIAVAEQLSRL  445 (517)
T ss_dssp             SSSCSSHHHHHHHHHHHHHCCCSSEE--EECSCSSSCCTHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHhCCCCCEE--EEeCCcCCCCHHHHHHHHHHHHHH
Confidence            35 9999999 6999999999  999  999999999999999999888763

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.26  E-value=1.1e-11  Score=101.87  Aligned_cols=41  Identities=22%  Similarity=0.285  Sum_probs=37.2

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      +|++++|+|||||||||++++|+|++ .+.+|.|.+.+.++.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll-~~~~g~V~l~g~D~~  141 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY-QNLGKKVMFCAGDTF  141 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH-HTTTCCEEEECCCCS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH-HhcCCEEEEEeecCC
Confidence            79999999999999999999999988 677889999887764

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.24  E-value=2.5e-12  Score=111.62  Aligned_cols=54  Identities=15%  Similarity=0.036  Sum_probs=48.7

Q ss_pred             CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      .+..+++++||++++ ++++|+||||||||||+++|+|++ ++.+|.|.++|.++.
T Consensus        15 ~~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           15 INWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL-IPDLTLLNFRNTTEA   68 (483)
T ss_dssp             EEETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHH-CCCTTTCCCCCTTSC
T ss_pred             eccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCC-CCCCCEEEECCEEcc
Confidence            346789999999999 999999999999999999999988 788999999987653

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.20  E-value=2e-11  Score=90.18  Aligned_cols=75  Identities=15%  Similarity=0.235  Sum_probs=54.9

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceeec
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIAS  108 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (190)
                      +|+.++|+||||||||||+++|++.+.+.+...+++++.++...                                    
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~------------------------------------   78 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT------------------------------------   78 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC------------------------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH------------------------------------
Confidence            89999999999999999999999988443222677776654320                                    


Q ss_pred             ccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          109 LISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       109 ~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                                   +++.+++++  ++|||+. ++....+.+++.+.+
T Consensus        79 -------------~~~~~~~lL--ilDE~~~-~~~~~~~~l~~li~~  109 (149)
T 2kjq_A           79 -------------DAAFEAEYL--AVDQVEK-LGNEEQALLFSIFNR  109 (149)
T ss_dssp             -------------GGGGGCSEE--EEESTTC-CCSHHHHHHHHHHHH
T ss_pred             -------------HHHhCCCEE--EEeCccc-cChHHHHHHHHHHHH
Confidence                         124568999  9999987 444346777776653

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.19  E-value=2.4e-13  Score=105.39  Aligned_cols=44  Identities=30%  Similarity=0.308  Sum_probs=36.8

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHHhh--CCCcEEEEcCcccc
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKELYS--RGKLSYILDGDNLR   70 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~--~~~g~i~~~g~~~~   70 (190)
                      .++|++++|+||||||||||+++|+|++.+  +..|.+.+++..+.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~   64 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD   64 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence            578999999999999999999999998853  24677888776553

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.19  E-value=9.4e-12  Score=97.69  Aligned_cols=113  Identities=14%  Similarity=0.152  Sum_probs=65.6

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcc
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLI  104 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (190)
                      ..++|++++|+||||||||||+++|+|.+++ ...|.+.+.+++........++|.+++... +..      ....-...
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~-f~~------~~~~~~f~   84 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDE-FKE------MISRDAFL   84 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHH-HHH------HHHTTCEE
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHH-HHH------HHhcCHHH
Confidence            4579999999999999999999999997732 246677777766543333445666654432 111      11100111


Q ss_pred             eee---cccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHH
Q 029613          105 CIA---SLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLAR  154 (190)
Q Consensus       105 ~~~---~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~  154 (190)
                      ...   ..+.+..+  ..+..++..++++  +||     ||+...+.+.+.+.
T Consensus        85 E~~~~~~~~yg~~~--~~v~~~l~~G~il--lLD-----LD~~~~~~i~~~l~  128 (219)
T 1s96_A           85 EHAEVFGNYYGTSR--EAIEQVLATGVDV--FLD-----IDWQGAQQIRQKMP  128 (219)
T ss_dssp             EEEEETTEEEEEEH--HHHHHHHTTTCEE--EEE-----CCHHHHHHHHHHCT
T ss_pred             HHHHHHhccCCCCH--HHHHHHHhcCCeE--EEE-----ECHHHHHHHHHHcc
Confidence            111   11111112  2345555667888  999     77777777776654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.18  E-value=2.2e-10  Score=85.76  Aligned_cols=110  Identities=23%  Similarity=0.309  Sum_probs=61.9

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--cc-cccCCChh--hHHHHHHHHHHHHHHHHHcC
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--LN-KNLGFSAE--DRTENIRRVGEVAKLFADAG  102 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--~~-~~i~~~~~--~~~~~~~~~~~~~~~~~~~~  102 (190)
                      .+|++++|+|+|||||||++++|++.+     |.++++++++...  .. ...++..+  .....+..+......+...+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTN   80 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcC
Confidence            578999999999999999999999965     4678888776431  10 11233322  22222333333222221222


Q ss_pred             cceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhc
Q 029613          103 LICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEAR  144 (190)
Q Consensus       103 ~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~  144 (190)
                      ...++..-.....++..++...  +++..|+||.|...+..|
T Consensus        81 ~~~vi~~~~~~~~~~~~l~~~~--~~~~vv~l~~~~e~~~~R  120 (175)
T 1knq_A           81 KVSLIVCSALKKHYRDLLREGN--PNLSFIYLKGDFDVIESR  120 (175)
T ss_dssp             SEEEEECCCCSHHHHHHHHTTC--TTEEEEEEECCHHHHHHH
T ss_pred             CcEEEEeCchHHHHHHHHHhcC--CCEEEEEEECCHHHHHHH
Confidence            2222222122344455555433  344445999999887655

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.18  E-value=4e-12  Score=101.75  Aligned_cols=62  Identities=19%  Similarity=0.254  Sum_probs=41.3

Q ss_pred             cccccCcc-eecc-CccccccccccccCC---ccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613            3 TVGNSTNI-FWQE-SPIGRLERQKLLNQK---GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus         3 ~~l~~~~l-~~~~-~~~~~l~~~sl~i~~---Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      ++++++|+ +++| ++..+++++||++.+   |++++|+|++||||||++++|++.+.     ..+++.+.+
T Consensus        16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg-----~~~~d~d~~   82 (250)
T 3nwj_A           16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG-----YTFFDCDTL   82 (250)
T ss_dssp             ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT-----CEEEEHHHH
T ss_pred             CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC-----CcEEeCcHH
Confidence            37899999 9999 778899999999999   99999999999999999999999772     235665443

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.17  E-value=9.9e-11  Score=96.25  Aligned_cols=98  Identities=13%  Similarity=0.150  Sum_probs=65.8

Q ss_pred             ccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHc
Q 029613           22 RQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADA  101 (190)
Q Consensus        22 ~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  101 (190)
                      .+++...+|++++|+|+|||||||+++.|++.+. +..+.+.+.+.+...         .. ..      .++..+....
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-~~g~kV~lv~~D~~r---------~~-a~------eqL~~~~~~~  158 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFR---------AA-AI------EQLKIWGERV  158 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTC---------HH-HH------HHHHHHHHHH
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-hcCCEEEEEcccccc---------HH-HH------HHHHHHHHHc
Confidence            4567778999999999999999999999999884 445556655444321         10 11      1122222333


Q ss_pred             CcceeecccCccHHHH----HHHHHhCCCCCeEEEEeeCCch
Q 029613          102 GLICIASLISPYRKDR----DACRAMLPDSNFIEVFMNMPLE  139 (190)
Q Consensus       102 ~~~~~~~~lS~g~kqr----~iarall~~~~il~vllDEP~~  139 (190)
                      ++.. ....++++.++    .+++++..+++++  ++|+|..
T Consensus       159 gl~~-~~~~s~~~~~~v~~~al~~a~~~~~dvv--IiDtpg~  197 (306)
T 1vma_A          159 GATV-ISHSEGADPAAVAFDAVAHALARNKDVV--IIDTAGR  197 (306)
T ss_dssp             TCEE-ECCSTTCCHHHHHHHHHHHHHHTTCSEE--EEEECCC
T ss_pred             CCcE-EecCCccCHHHHHHHHHHHHHhcCCCEE--EEECCCc
Confidence            4332 33456777665    4788888999999  9999963

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.16  E-value=6.4e-12  Score=96.84  Aligned_cols=27  Identities=37%  Similarity=0.352  Sum_probs=23.3

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++|++++|+||||||||||+++|+|.+
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            478999999999999999999999977

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.15  E-value=1.8e-11  Score=92.40  Aligned_cols=95  Identities=17%  Similarity=0.207  Sum_probs=58.9

Q ss_pred             ccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcC
Q 029613           24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAG  102 (190)
Q Consensus        24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  102 (190)
                      ++.+.+|+.++|+||||||||||+++|++.+. ..+...++++               ..+.   ..   .+...+....
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~---------------~~~~---~~---~~~~~~~~~~   90 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD---------------TKDL---IF---RLKHLMDEGK   90 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE---------------HHHH---HH---HHHHHHHHTC
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE---------------HHHH---HH---HHHHHhcCch
Confidence            67778899999999999999999999999884 2232222221               1111   11   1111111111


Q ss_pred             cceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCch-hhhhcChHHHHHHHHc
Q 029613          103 LICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLE-LCEARDPKGLYKLARA  155 (190)
Q Consensus       103 ~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~-~ld~~~~~~~~~~~~~  155 (190)
                      .         .     .+...+.+|+++  +||||++ ++|+...+.+++.+.+
T Consensus        91 ~---------~-----~~~~~~~~~~ll--ilDE~~~~~~~~~~~~~l~~ll~~  128 (180)
T 3ec2_A           91 D---------T-----KFLKTVLNSPVL--VLDDLGSERLSDWQRELISYIITY  128 (180)
T ss_dssp             C---------S-----HHHHHHHTCSEE--EEETCSSSCCCHHHHHHHHHHHHH
T ss_pred             H---------H-----HHHHHhcCCCEE--EEeCCCCCcCCHHHHHHHHHHHHH
Confidence            0         0     112223478999  9999985 7887777777777654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.12  E-value=3.2e-10  Score=98.46  Aligned_cols=49  Identities=18%  Similarity=0.274  Sum_probs=42.9

Q ss_pred             ccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        20 l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      .+++||++.+|++++|+|+||||||||+++|+|++ .+.+|.|.+.+.+.
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll-~~~~G~V~l~g~D~  331 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF-EQQGKSVMLAAGDT  331 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEECCCT
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHh-hhcCCeEEEecCcc
Confidence            36899999999999999999999999999999988 55678888875544

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.10  E-value=7.5e-12  Score=94.70  Aligned_cols=120  Identities=18%  Similarity=0.147  Sum_probs=66.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCC--CcEEEEcCccccc-------ccc-cccC----CChhhH--------HHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRG--KLSYILDGDNLRH-------GLN-KNLG----FSAEDR--------TENI   88 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~--~g~i~~~g~~~~~-------~~~-~~i~----~~~~~~--------~~~~   88 (190)
                      ++++|+|+||||||||+++|.+++.+.+  .|.|.+++.++..       ..+ ..++    +..++.        .+ .
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~-~   81 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEE-E   81 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHH-H
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChh-h
Confidence            5899999999999999999999884432  7899998876321       111 1223    111110        11 0


Q ss_pred             HHHHHHHHHHHH-c-Ccc-eeecccCccHHHH-HHHHHhCCCCCeE-----EEEeeCCch---hhhhcChHHHHHHH
Q 029613           89 RRVGEVAKLFAD-A-GLI-CIASLISPYRKDR-DACRAMLPDSNFI-----EVFMNMPLE---LCEARDPKGLYKLA  153 (190)
Q Consensus        89 ~~~~~~~~~~~~-~-~~~-~~~~~lS~g~kqr-~iarall~~~~il-----~vllDEP~~---~ld~~~~~~~~~~~  153 (190)
                        ...+..++.. . ++. .+...+|+|++|| ++||+++.+|++.     -+.=|.|..   .++..+.+.+.+.+
T Consensus        82 --~a~l~~~i~~~l~g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i  156 (171)
T 2f1r_A           82 --GNDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFI  156 (171)
T ss_dssp             --HTCHHHHHHHHTTTCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHH
T ss_pred             --hhCHHHHHHhhCCCCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHH
Confidence              0112222222 1 332 2344599999999 6999999998763     223355532   22334555555444

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.04  E-value=5.1e-11  Score=97.27  Aligned_cols=114  Identities=14%  Similarity=0.061  Sum_probs=63.5

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC--CcEEEE-cCcccccc--cccccC--------C----ChhhHHHHH
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG--KLSYIL-DGDNLRHG--LNKNLG--------F----SAEDRTENI   88 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~--~g~i~~-~g~~~~~~--~~~~i~--------~----~~~~~~~~~   88 (190)
                      .-.++.+++|+|++|||||||++.|.+.+...+  ...+.+ ..++....  ....+.        +    .++...  .
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d--~  104 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHD--M  104 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBC--H
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhH--H
Confidence            346789999999999999999999999884322  111222 33322110  000000        0    011000  1


Q ss_pred             HHHHHHHHHHHHc------C---cceeecccCccHHHH-HHH--HHhCCCCCeEEEEeeCCchhhhhcC
Q 029613           89 RRVGEVAKLFADA------G---LICIASLISPYRKDR-DAC--RAMLPDSNFIEVFMNMPLELCEARD  145 (190)
Q Consensus        89 ~~~~~~~~~~~~~------~---~~~~~~~lS~g~kqr-~ia--rall~~~~il~vllDEP~~~ld~~~  145 (190)
                      ..+.+....+..-      .   +-.+...+|+||+|| .+|  +++  +|+++  |+||+++++|+..
T Consensus       105 ~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~Il--IlEG~~~~ld~~~  169 (290)
T 1odf_A          105 KLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIF--ILEGWFLGFNPIL  169 (290)
T ss_dssp             HHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEE--EEEESSTTCCCCC
T ss_pred             HHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEE--EEeCccccCCccc
Confidence            1111111111111      0   112345689999998 455  555  78999  9999999998864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.03  E-value=1.3e-11  Score=97.91  Aligned_cols=36  Identities=22%  Similarity=0.191  Sum_probs=27.9

Q ss_pred             CccEEEEECCCCCcHHHHHHHHH---HHHhhCCCcEEEEc
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVN---KELYSRGKLSYILD   65 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~---g~l~~~~~g~i~~~   65 (190)
                      ++++++|+|+|||||||++++|+   |+. .+..|.+.++
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~-~~~~G~i~~~   64 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ-HLSSGHFLRE   64 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCC-CEEHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCe-EecHHHHHHH
Confidence            47999999999999999999999   543 3444544444

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.01  E-value=7.1e-10  Score=86.77  Aligned_cols=52  Identities=12%  Similarity=0.120  Sum_probs=39.5

Q ss_pred             cccccccc-cccCCccEEEEECCCCCcHHHHHHHHHHHHh-h-----CCCcEEEEcCcc
Q 029613           17 IGRLERQK-LLNQKGCVVWITGLSGSGKSTLAFSVNKELY-S-----RGKLSYILDGDN   68 (190)
Q Consensus        17 ~~~l~~~s-l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~-----~~~g~i~~~g~~   68 (190)
                      .+.|+.+- =-+++|++++|+||||||||||++.|++... +     .+.+.++++++.
T Consensus        10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           10 SKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             CHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            33444442 3578999999999999999999999999531 2     257788888765

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.00  E-value=2e-10  Score=88.18  Aligned_cols=38  Identities=24%  Similarity=0.304  Sum_probs=25.3

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..+++++||++.+|++++|+|++||||||+++.|++.+
T Consensus        12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            46899999999999999999999999999999999977

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.96  E-value=6.8e-11  Score=99.09  Aligned_cols=45  Identities=20%  Similarity=0.044  Sum_probs=33.9

Q ss_pred             cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEc
Q 029613           19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILD   65 (190)
Q Consensus        19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~   65 (190)
                      -++++++.+ +|++++|+|+||||||||+++|+|.+ . +..|.|.+.
T Consensus       205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~-~~~~~G~I~~~  250 (358)
T 2rcn_A          205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQ-NEILTNDVSNV  250 (358)
T ss_dssp             THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCS-SCCCCC-----
T ss_pred             CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccc-cccccCCcccc
Confidence            356666654 79999999999999999999999977 5 777887765

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.96  E-value=1.1e-11  Score=97.90  Aligned_cols=57  Identities=16%  Similarity=-0.029  Sum_probs=39.7

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      .|+++|+...++.       ++++.+ ++++|+||||||||||+++|+|.+ .+.+|.|.++|.++
T Consensus         9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~-~~~~G~i~~~g~~~   65 (227)
T 1qhl_A            9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTAL-IPDLTLLHFRNTTE   65 (227)
T ss_dssp             EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHH-SCCTTTC-------
T ss_pred             EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhccc-ccCCCeEEECCEEc
Confidence            3677777655542       345555 899999999999999999999988 67788899988776

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.95  E-value=1.3e-09  Score=90.36  Aligned_cols=44  Identities=23%  Similarity=0.320  Sum_probs=38.4

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      ..++|++++|+|||||||||+++.|+|.+ .+..|.|.+.+.++.
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l-~~~~g~V~l~g~D~~  168 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWL-KNHGFSVVIAASDTF  168 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEEECCS
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHH-HhcCCEEEEEeeccc
Confidence            45789999999999999999999999988 566788988887754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.94  E-value=2.1e-10  Score=89.91  Aligned_cols=38  Identities=24%  Similarity=0.323  Sum_probs=22.9

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHH-HHH
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVN-KEL   54 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~-g~l   54 (190)
                      .+-.+++||++++|++++|+||||||||||+++|+ |++
T Consensus        14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            35678999999999999999999999999999999 976

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.92  E-value=5.5e-10  Score=85.38  Aligned_cols=41  Identities=22%  Similarity=0.240  Sum_probs=31.0

Q ss_pred             ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      |++..+|++++|+||||||||||+++|+|++ +    .+.+.+..+
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~----~~~~~~~~~   41 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A----EIKISISHT   41 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S----SEEECCCEE
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C----CeEEeceec
Confidence            5677899999999999999999999999975 2    356666544

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.88  E-value=2.3e-08  Score=74.66  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=23.4

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .|.+++|+|++||||||+++.|+..+
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            35789999999999999999999866

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.87  E-value=1.5e-08  Score=76.64  Aligned_cols=38  Identities=32%  Similarity=0.361  Sum_probs=32.1

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH   71 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~   71 (190)
                      |++++|+|||||||||++++|++.    ..|.++++++++..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~~d~~~~   39 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIEGDIINH   39 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH----SSSEEEEEHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcc----cCCeEEEcccchhh
Confidence            789999999999999999999872    35778898877643

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.86  E-value=3.1e-11  Score=103.11  Aligned_cols=119  Identities=15%  Similarity=0.104  Sum_probs=66.9

Q ss_pred             ccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh----------hCCCcEEEEcC-cccccccccccCCCh--hh---
Q 029613           20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY----------SRGKLSYILDG-DNLRHGLNKNLGFSA--ED---   83 (190)
Q Consensus        20 l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~----------~~~~g~i~~~g-~~~~~~~~~~i~~~~--~~---   83 (190)
                      .++++|+++.|+.++|+|+||||||||+++|++...          .+..|.+.+++ ..+.  +....++..  ..   
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~--l~DtpGli~~a~~~~~  224 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFT--LADIPGIIEGASEGKG  224 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEE--EEECCCCCCCGGGSCC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEE--EEeccccccchhhhhh
Confidence            478999999999999999999999999999998621          23334455543 2211  001111110  00   


Q ss_pred             H-HHHHHHHHHHHHHHHHcCc-ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcCh
Q 029613           84 R-TENIRRVGEVAKLFADAGL-ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDP  146 (190)
Q Consensus        84 ~-~~~~~~~~~~~~~~~~~~~-~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~  146 (190)
                      . ...++.+.....++...++ ...+..+|.+++|+ .++++++..|.++  ++    +.+|....
T Consensus       225 L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~IL--Vl----NKlDl~~~  284 (416)
T 1udx_A          225 LGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLV--AL----NKVDLLEE  284 (416)
T ss_dssp             SCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEE--EE----ECCTTSCH
T ss_pred             hhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEE--EE----ECCChhhH
Confidence            0 0111110000000000111 12234578888998 5999999999988  66    55555443

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.85  E-value=2.3e-08  Score=76.46  Aligned_cols=105  Identities=20%  Similarity=0.264  Sum_probs=59.8

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCCChhhHHHHHHHHHHHHHHHHHcCcc
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGFSAEDRTENIRRVGEVAKLFADAGLI  104 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (190)
                      ..+++|+|++||||||+++.|++.+     |..+++++.+...     ......+........+..   +...+ ..+..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~---l~~~~-~~~~~   88 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC-----GYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAA---IGERL-ASREP   88 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH-----TCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHH---HHHHH-TSSSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh-----CCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHH---HHHHH-hcCCC
Confidence            5689999999999999999999876     2446777665321     111122333223332322   22222 22222


Q ss_pred             eeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhc
Q 029613          105 CIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEAR  144 (190)
Q Consensus       105 ~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~  144 (190)
                      .++........++..++.+...|. +.++||.|...+-.|
T Consensus        89 vivd~~~~~~~~~~~l~~~~~~~~-~vi~l~~~~e~~~~R  127 (202)
T 3t61_A           89 VVVSCSALKRSYRDKLRESAPGGL-AFVFLHGSESVLAER  127 (202)
T ss_dssp             CEEECCCCSHHHHHHHHHTSTTCC-EEEEEECCHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHhcCCCe-EEEEEeCCHHHHHHH
Confidence            233332334555666666665443 335999999887555

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.83  E-value=5.1e-10  Score=97.96  Aligned_cols=51  Identities=16%  Similarity=0.104  Sum_probs=45.5

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      ..+++++++.+++|++++|+|||||||||++++|+|++ +++.|.+.++|..
T Consensus       247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i-~~~~giitied~~  297 (511)
T 2oap_1          247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI-PPDAKVVSIEDTR  297 (511)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEEESSC
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC-CCCCCEEEEcCcc
Confidence            35778999999999999999999999999999999988 7788988887754

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.82  E-value=8.7e-10  Score=98.19  Aligned_cols=61  Identities=18%  Similarity=0.050  Sum_probs=49.8

Q ss_pred             cceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613            9 NIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus         9 ~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      +++.-|+...+++++++.+.+|+.+.|+||||+|||||+++|++.+.....+.+.+.+...
T Consensus        39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~   99 (604)
T 3k1j_A           39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE   99 (604)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred             ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence            3444567778999999999999999999999999999999999987433346777766554

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.80  E-value=5.4e-09  Score=84.41  Aligned_cols=54  Identities=24%  Similarity=0.263  Sum_probs=45.0

Q ss_pred             eccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           12 WQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        12 ~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      +.+....+++++++.+.+|  ++|+||||||||||+++|++.+ .  .+.+.++|.++.
T Consensus        28 ~~~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~-~--~~~i~i~g~~l~   81 (274)
T 2x8a_A           28 APVRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANES-G--LNFISVKGPELL   81 (274)
T ss_dssp             HHHHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHT-T--CEEEEEETTTTC
T ss_pred             HHhhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHc-C--CCEEEEEcHHHH
Confidence            3445567889999999999  9999999999999999999976 3  367888887664

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.79  E-value=2.9e-09  Score=88.01  Aligned_cols=39  Identities=18%  Similarity=0.347  Sum_probs=26.6

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      ..+.|+||||+||||++++|++.+..++.|.+.+++.++
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~   75 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF   75 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence            348999999999999999999955467778888777554

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=98.79  E-value=2.5e-09  Score=78.93  Aligned_cols=49  Identities=6%  Similarity=0.091  Sum_probs=43.6

Q ss_pred             ecccCccHHHH-HHH------HHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCC
Q 029613          107 ASLISPYRKDR-DAC------RAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGK  157 (190)
Q Consensus       107 ~~~lS~g~kqr-~ia------rall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~  157 (190)
                      +..+|+||+|| .+|      |+++.+|+++  +|||||++||+..++.+.+.+++-.
T Consensus        55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~ll--lLDEPt~~LD~~~~~~l~~~l~~~~  110 (148)
T 1f2t_B           55 LTFLSGGERIALGLAFRLAMSLYLAGEISLL--ILDEPTPYLDEERRRKLITIMERYL  110 (148)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEE--EEESCSCTTCHHHHHHHHHHHHHTG
T ss_pred             hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEE--EEECCCccCCHHHHHHHHHHHHHHH
Confidence            56799999999 464      8999999999  9999999999999999999888643

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.76  E-value=1.3e-08  Score=94.32  Aligned_cols=66  Identities=18%  Similarity=0.148  Sum_probs=53.6

Q ss_pred             HHHHHHcCcc-----eeecccCccHHHH-HHHHHhCCCCC--eEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613           95 AKLFADAGLI-----CIASLISPYRKDR-DACRAMLPDSN--FIEVFMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus        95 ~~~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~~--il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                      ...+...++.     ..+..|||||+|| .|||+|+.+|+  ++  +|||||++||+++.+.+.+.+++.+-.|.+
T Consensus       445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~ll--lLDEPT~gLD~~~~~~l~~~L~~L~~~G~T  518 (916)
T 3pih_A          445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIY--VLDEPTIGLHPRDTERLIKTLKKLRDLGNT  518 (916)
T ss_dssp             HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEE--EEECTTTTCCGGGHHHHHHHHHHTTTTTCE
T ss_pred             HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEE--EEECCccCCCHHHHHHHHHHHHHHHhcCCE
Confidence            3445555553     3477899999999 69999999876  99  999999999999999999999986655533

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.76  E-value=3.4e-08  Score=81.55  Aligned_cols=48  Identities=13%  Similarity=0.187  Sum_probs=39.7

Q ss_pred             cccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      ++++|...+|++++|+|+||+||||++..|++.+.. ..+.+.+.+.++
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~-~g~kVllid~D~  143 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE-LGYKVLIAAADT  143 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            689999999999999999999999999999998844 455566554444

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.76  E-value=1e-09  Score=87.04  Aligned_cols=59  Identities=24%  Similarity=0.211  Sum_probs=48.6

Q ss_pred             ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613            6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus         6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      +++++.+.|+...+++++++.+.+|  +.|+||||||||||+++|++.+   +.+.+.+++.++
T Consensus        27 ~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~~~~~   85 (254)
T 1ixz_A           27 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDF   85 (254)
T ss_dssp             HHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHH
T ss_pred             HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh---CCCEEEeeHHHH
Confidence            4556666676667899999999999  8999999999999999999976   266778877654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.76  E-value=8e-08  Score=76.38  Aligned_cols=124  Identities=17%  Similarity=0.190  Sum_probs=67.2

Q ss_pred             cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc------cccccCCChhhHHHH-H-HH
Q 029613           19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG------LNKNLGFSAEDRTEN-I-RR   90 (190)
Q Consensus        19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~------~~~~i~~~~~~~~~~-~-~~   90 (190)
                      ++++.. ..+++.+++|+|+|||||||+++.|+..+ .  .+.++++++.+...      +....+....+..+. . ..
T Consensus        22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l-~--~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~   97 (253)
T 2p5t_B           22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEF-Q--GNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKM   97 (253)
T ss_dssp             HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHT-T--TCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHH
T ss_pred             HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhc-C--CCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHH
Confidence            344444 67788999999999999999999999866 2  34678898877542      122234333333221 1 11


Q ss_pred             HHHHHHHHHHcCcceeecccCccHHHH-HHHHHhC-CCCCeEEEEeeCCchhhhhcCh
Q 029613           91 VGEVAKLFADAGLICIASLISPYRKDR-DACRAML-PDSNFIEVFMNMPLELCEARDP  146 (190)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~lS~g~kqr-~iarall-~~~~il~vllDEP~~~ld~~~~  146 (190)
                      +..+...+...+...++........++ ...+.+. ....+..++++.|...+..|..
T Consensus        98 ~~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~  155 (253)
T 2p5t_B           98 VESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTL  155 (253)
T ss_dssp             HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHH
Confidence            223333332333222332222222333 2222221 2223333488999888877643

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.76  E-value=5.8e-09  Score=78.43  Aligned_cols=34  Identities=29%  Similarity=0.305  Sum_probs=31.3

Q ss_pred             cccccccCCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      +++++.+.+| +++|+|+|||||||++++|.+.+.
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence            6788999999 999999999999999999999773

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.76  E-value=4.1e-08  Score=80.17  Aligned_cols=101  Identities=13%  Similarity=0.110  Sum_probs=56.8

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCccee
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICI  106 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (190)
                      .+|++++|+|+|||||||++..|++.+.. .|.-..+++.+....        .   ..+.+..      .....++...
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~--------~---a~eqL~~------~~~~~gl~~~  165 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI--------A---AVEQLKT------YAELLQAPLE  165 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST--------T---HHHHHHH------HHTTTTCCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc--------h---HHHHHHH------HHHhcCCCeE
Confidence            57999999999999999999999998842 343334444433211        0   1111111      1112222211


Q ss_pred             ecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHH
Q 029613          107 ASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKL  152 (190)
Q Consensus       107 ~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~  152 (190)
                      . ..++..-...+++  +.+++++  ++|  |++++..+...+.++
T Consensus       166 ~-~~~~~~l~~al~~--~~~~dlv--IiD--T~G~~~~~~~~~~el  204 (296)
T 2px0_A          166 V-CYTKEEFQQAKEL--FSEYDHV--FVD--TAGRNFKDPQYIDEL  204 (296)
T ss_dssp             B-CSSHHHHHHHHHH--GGGSSEE--EEE--CCCCCTTSHHHHHHH
T ss_pred             e-cCCHHHHHHHHHH--hcCCCEE--EEe--CCCCChhhHHHHHHH
Confidence            1 1222221123443  4888998  999  668887766554443

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.76  E-value=1.6e-09  Score=89.70  Aligned_cols=51  Identities=22%  Similarity=0.151  Sum_probs=47.0

Q ss_pred             ccccCcceeccCccccccccccccCCc-------cEEEEECCCCCcHHHHHHHHHHHH
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKG-------CVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~G-------eii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +++.++++..|+...+++++++.+++|       +.++|+||||+|||||+++|++.+
T Consensus        18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            578889999999888999999999876       899999999999999999999987

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.74  E-value=1.3e-09  Score=87.77  Aligned_cols=59  Identities=24%  Similarity=0.215  Sum_probs=48.2

Q ss_pred             ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613            6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus         6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      +++++.+.|+...+++++++.+.+|  ++|+||||||||||+++|++.+ .  .+.+.+++.++
T Consensus        51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~-~--~~~i~~~~~~~  109 (278)
T 1iy2_A           51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA-R--VPFITASGSDF  109 (278)
T ss_dssp             HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT-T--CCEEEEEHHHH
T ss_pred             HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc-C--CCEEEecHHHH
Confidence            3455666676667889999999999  8899999999999999999976 2  66778876654

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.72  E-value=1.6e-08  Score=85.86  Aligned_cols=44  Identities=16%  Similarity=0.140  Sum_probs=33.5

Q ss_pred             cccCCccEEEEECCCCCcHHHHHHHHH--HHHhh----CCCcEEEEcCcc
Q 029613           25 LLNQKGCVVWITGLSGSGKSTLAFSVN--KELYS----RGKLSYILDGDN   68 (190)
Q Consensus        25 l~i~~Geii~L~G~nGsGKSTLlr~l~--g~l~~----~~~g~i~~~g~~   68 (190)
                      =-+.+|+++.|+||||||||||++.|+  +.+++    .+.+.++++++.
T Consensus       173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence            357899999999999999999999664  33311    235578888765

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.71  E-value=5.6e-08  Score=75.90  Aligned_cols=53  Identities=15%  Similarity=0.104  Sum_probs=40.4

Q ss_pred             cccccccc-ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613           16 PIGRLERQ-KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus        16 ~~~~l~~~-sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      +.+.|+++ .--+.+|+++.|+|+||||||||+..++......+.+.++++.+.
T Consensus         8 G~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~   61 (247)
T 2dr3_A            8 GIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE   61 (247)
T ss_dssp             CCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            34567776 677899999999999999999997666554435666777776653

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.71  E-value=1.6e-08  Score=76.68  Aligned_cols=34  Identities=12%  Similarity=0.278  Sum_probs=29.6

Q ss_pred             HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          118 DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       118 ~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      ..|++++.++++.  ++|  +|++|....+.+++.+.+
T Consensus       155 ~~a~~l~~~~~~~--~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          155 DEARAFAEKNGLS--FIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             HHHHHHHHHTTCE--EEE--CCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCE--EEE--EeCCCCCCHHHHHHHHHH
Confidence            5889999999998  999  999999999998887753

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.68  E-value=3.5e-09  Score=86.59  Aligned_cols=45  Identities=29%  Similarity=0.271  Sum_probs=30.9

Q ss_pred             cccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE---cCcccc
Q 029613           25 LLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL---DGDNLR   70 (190)
Q Consensus        25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~---~g~~~~   70 (190)
                      |++..|++++|+||||||||||+++|+|+. .+..|.|.+   +|.++.
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~-~~~~G~i~~~~~~g~~~t  211 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGL-KLRVSEVSEKLQRGRHTT  211 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTC-CCC-------------CC
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccc-cccccceecccCCCCCce
Confidence            456789999999999999999999999977 778899998   777654

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.67  E-value=2.5e-09  Score=88.46  Aligned_cols=47  Identities=17%  Similarity=0.088  Sum_probs=39.9

Q ss_pred             cceeccCccccccccccccCCcc------EEEEECCCCCcHHHHHHHHHHHHh
Q 029613            9 NIFWQESPIGRLERQKLLNQKGC------VVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus         9 ~l~~~~~~~~~l~~~sl~i~~Ge------ii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      .+++.|++..++.+++..+..+.      +++|+|||||||||++++|.+++.
T Consensus        65 ll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           65 LLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             HHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            35566777788888888887665      999999999999999999999884

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.66  E-value=1.2e-08  Score=77.08  Aligned_cols=27  Identities=11%  Similarity=0.193  Sum_probs=25.1

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+|++++|+||||||||||+++|.+.+
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            368999999999999999999999976

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.64  E-value=1.2e-08  Score=77.86  Aligned_cols=30  Identities=30%  Similarity=0.482  Sum_probs=26.0

Q ss_pred             cccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           25 LLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +++.+|++++|+|||||||||++++|++.+
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            367899999999999999999999999976

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=98.61  E-value=1.3e-06  Score=69.54  Aligned_cols=43  Identities=30%  Similarity=0.386  Sum_probs=33.1

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH   71 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~   71 (190)
                      ++.+++|+|++||||||+++.|+..+...+...+.++.+.+..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~   45 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE   45 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence            4678999999999999999999987744454444467776653

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.58  E-value=3e-08  Score=76.08  Aligned_cols=40  Identities=33%  Similarity=0.288  Sum_probs=32.4

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG   66 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g   66 (190)
                      ...+|++++|+|+|||||||++++|++.+. +..+.+.+.+
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~-~~~~~v~~~~   57 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR-EQGISVCVFH   57 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHh-hcCCeEEEec
Confidence            467899999999999999999999999884 3345555443

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.58  E-value=1.5e-08  Score=84.27  Aligned_cols=53  Identities=21%  Similarity=0.102  Sum_probs=47.4

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS   56 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~   56 (190)
                      +++.++..+.|+...+++++++...+|.+++|+|+||+||||+++.|++.+.+
T Consensus        30 ~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~   82 (341)
T 2p67_A           30 LVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR   82 (341)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            46777788888878899999999999999999999999999999999998843

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.57  E-value=6.8e-09  Score=85.29  Aligned_cols=44  Identities=23%  Similarity=0.236  Sum_probs=27.0

Q ss_pred             cccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE---cCccc
Q 029613           25 LLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL---DGDNL   69 (190)
Q Consensus        25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~---~g~~~   69 (190)
                      +++.+|++++|+|+||||||||+++|.|.+ .+..|.|.+   +|..+
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~-~~~~G~I~~~~~~G~~t  214 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPEL-GLRTNEISEHLGRGKHT  214 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccc-cccccceeeecCCCccc
Confidence            778899999999999999999999999977 667788877   66544

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.56  E-value=1.8e-08  Score=82.46  Aligned_cols=43  Identities=19%  Similarity=0.198  Sum_probs=32.1

Q ss_pred             cccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE---cCccc
Q 029613           25 LLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL---DGDNL   69 (190)
Q Consensus        25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~---~g~~~   69 (190)
                      +++.+|++++|+||||||||||+++|. .+ .+..|.|.+   +|.++
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~-~~~~G~i~~~~~~G~~~  205 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GE-ELRTQEVSEKTERGRHT  205 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SC-CCCCSCC---------C
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-Hh-hCcccccccccCCCCCc
Confidence            345679999999999999999999999 66 678888888   77654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.55  E-value=5.6e-09  Score=83.17  Aligned_cols=35  Identities=23%  Similarity=0.168  Sum_probs=28.5

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHH---HHHhhCCCcEEE
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVN---KELYSRGKLSYI   63 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~---g~l~~~~~g~i~   63 (190)
                      .+|++++|+|||||||||++++|+   |+. .++.|.++
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~-~~d~g~i~   62 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWR-LLDSGAIY   62 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCE-EEEHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCC-cCCCCcee
Confidence            789999999999999999999999   533 34455554

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=98.53  E-value=3.9e-08  Score=74.32  Aligned_cols=48  Identities=10%  Similarity=0.034  Sum_probs=42.2

Q ss_pred             ecccCccHHHH-HHHHHhC----CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          107 ASLISPYRKDR-DACRAML----PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       107 ~~~lS~g~kqr-~iarall----~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +..|||||||| ++|++++    ..|+++  +||||+++||+.....+.+.+++.
T Consensus        62 ~~~LSgGekqr~ala~~la~~~~~~~~~l--lLDEp~a~LD~~~~~~~~~~l~~~  114 (173)
T 3kta_B           62 IEAMSGGEKALTALAFVFAIQKFKPAPFY--LFDEIDAHLDDANVKRVADLIKES  114 (173)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHSCCSEE--EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHhcccCCCCEE--EECCCccCCCHHHHHHHHHHHHHh
Confidence            56799999999 6999996    456899  999999999999999999988763

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.53  E-value=5.3e-08  Score=89.55  Aligned_cols=62  Identities=16%  Similarity=0.154  Sum_probs=50.4

Q ss_pred             HHHHcCcc-----eeecccCccHHHH-HHHHHhCCCC--CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613           97 LFADAGLI-----CIASLISPYRKDR-DACRAMLPDS--NFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus        97 ~~~~~~~~-----~~~~~lS~g~kqr-~iarall~~~--~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      .+...++.     ..+..||+||+|| ++|++|..+|  .++  +|||||++||+.+.+.+++.+++.+-.|
T Consensus       362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~ll--ILDEPT~~Ld~~~~~~L~~~l~~L~~~G  431 (842)
T 2vf7_A          362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVY--VLDEPSAGLHPADTEALLSALENLKRGG  431 (842)
T ss_dssp             HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEE--EEECTTTTCCGGGHHHHHHHHHHHHTTT
T ss_pred             HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEE--EeeCccccCCHHHHHHHHHHHHHHHHcC
Confidence            34455553     2377899999999 6999999998  488  9999999999999999999887654344

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.53  E-value=3.7e-08  Score=83.11  Aligned_cols=38  Identities=24%  Similarity=0.060  Sum_probs=35.4

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..+++++++.+++|++++|+||||||||||+++|++.+
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            35789999999999999999999999999999999965

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.52  E-value=3.1e-08  Score=77.61  Aligned_cols=45  Identities=24%  Similarity=0.178  Sum_probs=36.2

Q ss_pred             cccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      .+-+...++|++++|.|+|||||||++++|++.     .|.+.+.+.+..
T Consensus        11 ~~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~~~   55 (230)
T 2vp4_A           11 GTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEPVE   55 (230)
T ss_dssp             -CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCTHH
T ss_pred             CCccCCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecCHH
Confidence            344667789999999999999999999999984     456777776653

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.51  E-value=1e-07  Score=72.43  Aligned_cols=34  Identities=18%  Similarity=0.299  Sum_probs=28.1

Q ss_pred             HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          118 DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       118 ~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      ..|++++.++++.  ++|  +|++|....+.+++.+.+
T Consensus       131 ~~a~~l~~~~~~~--~~d--~Sal~~~~i~~l~~~l~~  164 (199)
T 2f9l_A          131 DEARAFAEKNNLS--FIE--TSALDSTNVEEAFKNILT  164 (199)
T ss_dssp             HHHHHHHHHTTCE--EEE--CCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCe--EEE--EeCCCCCCHHHHHHHHHH
Confidence            4688888889988  999  999999998887776654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.49  E-value=6.4e-08  Score=74.67  Aligned_cols=27  Identities=33%  Similarity=0.534  Sum_probs=25.5

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++|++++|+|||||||||+++.|++.+
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            589999999999999999999999976

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.47  E-value=1.8e-07  Score=86.82  Aligned_cols=53  Identities=15%  Similarity=0.070  Sum_probs=46.2

Q ss_pred             eecccCccHHHH-HHHHHhCCCC--CeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          106 IASLISPYRKDR-DACRAMLPDS--NFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       106 ~~~~lS~g~kqr-~iarall~~~--~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      .+..|||||+|| +||+++..+|  .++  +|||||++||+++.+.+++.+++.+-.|
T Consensus       501 ~~~tLSGGEkQRV~LA~aL~~~~~~~ll--ILDEPTagLdp~~~~~L~~~L~~Lr~~G  556 (972)
T 2r6f_A          501 SAGTLSGGEAQRIRLATQIGSRLTGVLY--VLDEPSIGLHQRDNDRLIATLKSMRDLG  556 (972)
T ss_dssp             BGGGCCHHHHHHHHHHHHHTTCCCSCEE--EEECTTTTCCGGGHHHHHHHHHHHHTTT
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEE--EEeCcccCCCHHHHHHHHHHHHHHHhCC
Confidence            367899999999 6999999985  899  9999999999999999999888654344

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.46  E-value=8e-07  Score=76.01  Aligned_cols=56  Identities=18%  Similarity=0.088  Sum_probs=42.1

Q ss_pred             CcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613            8 TNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus         8 ~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      +++.+.|+...  ++++|.  ++++++++|+|||||||++..|++.+. +..+.+.+.+.+
T Consensus        80 ~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-~~g~~Vllvd~D  135 (425)
T 2ffh_A           80 EALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAAD  135 (425)
T ss_dssp             HHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECC
T ss_pred             HHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEeecc
Confidence            34566676543  678887  899999999999999999999999884 444555554433

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.44  E-value=6.7e-07  Score=74.59  Aligned_cols=99  Identities=17%  Similarity=0.195  Sum_probs=61.1

Q ss_pred             cccccccc--ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHH
Q 029613           18 GRLERQKL--LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVA   95 (190)
Q Consensus        18 ~~l~~~sl--~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   95 (190)
                      ..|+.+--  -+++|+++.|.|+||||||||+..++......+...++++.+...         .+. .   .+      
T Consensus        47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~---------~~~-~---a~------  107 (349)
T 2zr9_A           47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL---------DPE-Y---AK------  107 (349)
T ss_dssp             HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---------CHH-H---HH------
T ss_pred             HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc---------CHH-H---HH------
Confidence            34444432  567999999999999999999999987665556666777665321         111 0   00      


Q ss_pred             HHHHHcCc--ce-eecccCccHHHHHHHHHhCCC--CCeEEEEeeCCchhh
Q 029613           96 KLFADAGL--IC-IASLISPYRKDRDACRAMLPD--SNFIEVFMNMPLELC  141 (190)
Q Consensus        96 ~~~~~~~~--~~-~~~~lS~g~kqr~iarall~~--~~il~vllDEP~~~l  141 (190)
                          ..+.  .. .+......+....++++++.+  ++++  ++|++++.+
T Consensus       108 ----~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lI--VIDsl~~l~  152 (349)
T 2zr9_A          108 ----KLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDII--VIDSVAALV  152 (349)
T ss_dssp             ----HTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEE--EEECGGGCC
T ss_pred             ----HcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEE--EEcChHhhc
Confidence                1111  00 111112233444677777654  7888  999999876

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.42  E-value=1.2e-07  Score=80.96  Aligned_cols=46  Identities=11%  Similarity=0.036  Sum_probs=41.5

Q ss_pred             ccCccHHHH-HHHHHhC----CCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          109 LISPYRKDR-DACRAML----PDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       109 ~lS~g~kqr-~iarall----~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      .+|+||+|+ ++|++++    .+|+++  +||||+++||+..+..+.+.+++.
T Consensus       333 ~lS~Gq~~~~~la~~la~~~~~~~~~l--llDEp~~~LD~~~~~~l~~~l~~~  383 (430)
T 1w1w_A          333 YLSGGEKTVAALALLFAINSYQPSPFF--VLDEVDAALDITNVQRIAAYIRRH  383 (430)
T ss_dssp             GSCHHHHHHHHHHHHHHHHTSSCCSEE--EESSTTTTCCHHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHHHhcCCCCCEE--EeCCCcccCCHHHHHHHHHHHHHH
Confidence            489999999 6999998    678999  999999999999999999988763

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.41  E-value=9.8e-07  Score=72.00  Aligned_cols=57  Identities=18%  Similarity=0.075  Sum_probs=41.4

Q ss_pred             CcceeccCccccccc-cccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613            8 TNIFWQESPIGRLER-QKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus         8 ~~l~~~~~~~~~l~~-~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      +++.+.|+...  ++ ++++.+ |.+++++|+||+||||++..|++.+...+.-..+++.+
T Consensus        78 ~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D  135 (297)
T 1j8m_F           78 DELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD  135 (297)
T ss_dssp             HHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             HHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            34555666443  56 888877 99999999999999999999999885443333344433

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.41  E-value=4.9e-08  Score=85.95  Aligned_cols=59  Identities=24%  Similarity=0.259  Sum_probs=45.8

Q ss_pred             ccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613            6 NSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG   66 (190)
Q Consensus         6 ~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g   66 (190)
                      .++++.+.|....++.++++++ +|++++|+||||+|||||+++|++.+ .+..+.+.+.+
T Consensus        85 G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l-~~~~~~i~~~~  143 (543)
T 3m6a_A           85 GLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSL-GRKFVRISLGG  143 (543)
T ss_dssp             SCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHH-TCEEEEECCCC
T ss_pred             cHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEecc
Confidence            3455556666666788899998 89999999999999999999999988 44455554443

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.40  E-value=3.1e-06  Score=72.76  Aligned_cols=123  Identities=14%  Similarity=0.179  Sum_probs=69.1

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEcCccccccc-----ccccCCChhhH------
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILDGDNLRHGL-----NKNLGFSAEDR------   84 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~g~~~~~~~-----~~~i~~~~~~~------   84 (190)
                      ...|+++..-+++|+++.|.|+||+|||||+..+++.+.. .+...+++..+.-...+     ....++..+..      
T Consensus       190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~  269 (454)
T 2r6a_A          190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLT  269 (454)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCC
T ss_pred             cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCC
Confidence            4578888888999999999999999999999999987743 34345555543211100     00112222211      


Q ss_pred             HHHHHHHHHHHHHHHHcCccee-ecccCccHHHHHHHHHhC--CCCCeEEEEeeCCchhhh
Q 029613           85 TENIRRVGEVAKLFADAGLICI-ASLISPYRKDRDACRAML--PDSNFIEVFMNMPLELCE  142 (190)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~-~~~lS~g~kqr~iarall--~~~~il~vllDEP~~~ld  142 (190)
                      .+...++......+....+... ...++.++. +..++.+.  .+++++  ++|++.....
T Consensus       270 ~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i-~~~~~~l~~~~~~~li--vID~l~~~~~  327 (454)
T 2r6a_A          270 PEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDI-RAKCRRLKQESGLGMI--VIDYLQLIQG  327 (454)
T ss_dssp             HHHHHHHHHHHHHHHSSCEEEECCTTCCHHHH-HHHHHHHHTTTCCCEE--EEECGGGSCC
T ss_pred             HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHH-HHHHHHHHHHcCCCEE--EEccHHHhcc
Confidence            0111222222222222221111 223555543 34566655  467888  9999998764

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.39  E-value=1.4e-07  Score=69.98  Aligned_cols=36  Identities=25%  Similarity=0.416  Sum_probs=29.3

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      .|.+++|+|+|||||||++++|++.+ .    ..+++++.+
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l-~----~~~id~d~~   38 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQL-N----MEFYDSDQE   38 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHT-T----CEEEEHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh-C----CCEEeccHH
Confidence            36789999999999999999999976 2    246776554

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.38  E-value=2.6e-07  Score=80.08  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=29.6

Q ss_pred             ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           18 GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        18 ~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..++++++.+.+|  +.|+||||+|||||+++|++..
T Consensus        39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence            3456677777777  7799999999999999999976

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.37  E-value=2.2e-06  Score=63.59  Aligned_cols=36  Identities=31%  Similarity=0.374  Sum_probs=27.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      .+++|.|++||||||+++.|+..    ..|..+++.+.+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d~~r   38 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDDYR   38 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHHHHH
Confidence            57899999999999999999872    1245566655443

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.37  E-value=2.8e-07  Score=71.00  Aligned_cols=32  Identities=22%  Similarity=0.262  Sum_probs=26.2

Q ss_pred             cccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           23 QKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        23 ~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      -++...+|++++|+||||||||||++.|.+.+
T Consensus        12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             ----CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             ccCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            35566789999999999999999999999975

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.32  E-value=1.2e-07  Score=82.92  Aligned_cols=143  Identities=17%  Similarity=0.144  Sum_probs=74.7

Q ss_pred             cccccccCCccEEEEECCCCCcHHHHHHHHHH-HHhhCCCcEEE---EcCccccc----ccccc---cCCChhhHHHHHH
Q 029613           21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNK-ELYSRGKLSYI---LDGDNLRH----GLNKN---LGFSAEDRTENIR   89 (190)
Q Consensus        21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g-~l~~~~~g~i~---~~g~~~~~----~~~~~---i~~~~~~~~~~~~   89 (190)
                      +-+++++.++..+.|.|.+||||||+++.|.. ++.....+.+.   +|-.....    .+...   +.....+..+.++
T Consensus       158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~~a~~~L~  237 (512)
T 2ius_A          158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALR  237 (512)
T ss_dssp             CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHHHHHHHHH
T ss_pred             CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHHHHHHHHH
Confidence            34678888999999999999999999999875 34333333333   33222110    11111   1111222222222


Q ss_pred             H----HHHHHHHHHHcCccee-------ecccCccHHHH-----------HHHHHhCCCCCeEEEEeeCCchhhhhc--C
Q 029613           90 R----VGEVAKLFADAGLICI-------ASLISPYRKDR-----------DACRAMLPDSNFIEVFMNMPLELCEAR--D  145 (190)
Q Consensus        90 ~----~~~~~~~~~~~~~~~~-------~~~lS~g~kqr-----------~iarall~~~~il~vllDEP~~~ld~~--~  145 (190)
                      +    +.+-..++...++..+       ...+|+|++|+           .+++++...|.++ +++||+.+.++..  .
T Consensus       238 ~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv-lvIDE~~~ll~~~~~~  316 (512)
T 2ius_A          238 WCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV-VLVDEFADLMMTVGKK  316 (512)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEE-EEEETHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEE-EEEeCHHHHHhhhhHH
Confidence            1    1122344555554332       11244554432           1334445566532 4999999888632  2


Q ss_pred             -hHHHHHHHHcCCCCCcccc
Q 029613          146 -PKGLYKLARAGKIKGLLSI  164 (190)
Q Consensus       146 -~~~~~~~~~~~~~~~~~~~  164 (190)
                       .+.+...++.|+..|+..+
T Consensus       317 ~~~~l~~Lar~gRa~GI~LI  336 (512)
T 2ius_A          317 VEELIARLAQKARAAGIHLV  336 (512)
T ss_dssp             HHHHHHHHHHHCGGGTEEEE
T ss_pred             HHHHHHHHHHHhhhCCcEEE
Confidence             2334455577877776544

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.30  E-value=1e-07  Score=78.42  Aligned_cols=39  Identities=26%  Similarity=0.285  Sum_probs=31.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHh-------hCCCcEEEEcCccc
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELY-------SRGKLSYILDGDNL   69 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~-------~~~~g~i~~~g~~~   69 (190)
                      ++++|+|+||||||||++.|.|...       .+..|.|.++|..+
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l   50 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI   50 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence            6899999999999999999999631       34667777777654

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=98.29  E-value=3.4e-06  Score=63.30  Aligned_cols=38  Identities=26%  Similarity=0.436  Sum_probs=29.4

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      .++.++.|+|++||||||+++.|+..+ .    ..+++.+.+.
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l-~----~~~i~~D~~~   40 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL-R----LPLLSKDAFK   40 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH-T----CCEEEHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc-C----CeEecHHHHH
Confidence            467899999999999999999998866 1    2355655554

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.29  E-value=1.2e-06  Score=74.67  Aligned_cols=99  Identities=17%  Similarity=0.122  Sum_probs=56.5

Q ss_pred             ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCc
Q 029613           24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGL  103 (190)
Q Consensus        24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (190)
                      .+.-.++.++.|+|++||||||+++.|+..+     +.++++.+.+..            ...   ....+...+ ..+.
T Consensus       252 ~~~~~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~------------~~~---~~~~~~~~l-~~g~  310 (416)
T 3zvl_A          252 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTLGS------------WQR---CVSSCQAAL-RQGK  310 (416)
T ss_dssp             CSCCSSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGSCS------------HHH---HHHHHHHHH-HTTC
T ss_pred             ccCCCCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchHHH------------HHH---HHHHHHHHH-hcCC
Confidence            3445567899999999999999999887633     345666655421            111   111122222 2343


Q ss_pred             ceeecccCccHHHHH----HHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613          104 ICIASLISPYRKDRD----ACRAMLPDSNFIEVFMNMPLELCEARD  145 (190)
Q Consensus       104 ~~~~~~lS~g~kqr~----iarall~~~~il~vllDEP~~~ld~~~  145 (190)
                      ..++........+|.    +++..-  ..+..++||.|...|-.|.
T Consensus       311 ~vIiD~~~~~~~~r~~~~~~~~~~~--~~~~~v~l~~~~e~l~~R~  354 (416)
T 3zvl_A          311 RVVIDNTNPDVPSRARYIQCAKDAG--VPCRCFNFCATIEQARHNN  354 (416)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHT--CCEEEEEECCCHHHHHHHH
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHHcC--CeEEEEEEeCCHHHHHHHH
Confidence            344444444444443    333332  2344459999998886664

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.27  E-value=8.6e-07  Score=69.58  Aligned_cols=45  Identities=27%  Similarity=0.343  Sum_probs=29.9

Q ss_pred             ccccccccccC---CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613           18 GRLERQKLLNQ---KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL   64 (190)
Q Consensus        18 ~~l~~~sl~i~---~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~   64 (190)
                      .-+.+.++.+.   +|.+++|.|++||||||+++.|+..+. . .+.+..
T Consensus        11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-~-~~~~~~   58 (229)
T 4eaq_A           11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-K-DYDVIM   58 (229)
T ss_dssp             ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-T-TSCEEE
T ss_pred             cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-c-CCCcee
Confidence            34667777776   899999999999999999999999884 3 344443

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.27  E-value=7.9e-07  Score=75.10  Aligned_cols=51  Identities=16%  Similarity=0.017  Sum_probs=46.2

Q ss_pred             cccCcceeccCc-ccccc--------------ccccccCCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613            5 GNSTNIFWQESP-IGRLE--------------RQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus         5 l~~~~l~~~~~~-~~~l~--------------~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      +.++|+++.|.. +..++              |+.+.+.+|+.++|+|++|+|||||++.|++.+.
T Consensus       134 i~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          134 ILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             CCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             ceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            678999999975 56788              8999999999999999999999999999999874

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.27  E-value=3.1e-07  Score=80.10  Aligned_cols=58  Identities=24%  Similarity=0.209  Sum_probs=45.5

Q ss_pred             cCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613            7 STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus         7 ~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      ++++...+....+++++++.+.+|  +.|+||||+|||||+++|++.+   +.+.+.+++.++
T Consensus        43 l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~  100 (499)
T 2dhr_A           43 LKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDF  100 (499)
T ss_dssp             HHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGG
T ss_pred             HHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHH
Confidence            344444455556788999999999  8899999999999999999965   356777777654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.24  E-value=5.5e-07  Score=68.97  Aligned_cols=34  Identities=32%  Similarity=0.407  Sum_probs=29.0

Q ss_pred             cccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .++--.+.+|.+++|+|+|||||||+++.|++.+
T Consensus        12 ~~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           12 SGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             --CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             ccccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3556678899999999999999999999999854

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.21  E-value=7.3e-06  Score=70.20  Aligned_cols=39  Identities=26%  Similarity=0.307  Sum_probs=30.1

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      ++.+++++|+|||||||++..|+..+...+.-..+++.+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D  134 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD  134 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence            588999999999999999999999885444333344433

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.19  E-value=8.8e-07  Score=74.99  Aligned_cols=40  Identities=18%  Similarity=0.195  Sum_probs=33.7

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHH------------HhhCCCcEEEEcC
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKE------------LYSRGKLSYILDG   66 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~------------l~~~~~g~i~~~g   66 (190)
                      .+.+|..++|+|+||||||||+++|+|.            + .+..|.+.+.+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi-~p~~G~v~v~~   67 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATI-DPEEAKVAVPD   67 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCC-CTTEEEEEECC
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceee-cceeeeeeeCC
Confidence            5678999999999999999999999992            2 45677787776

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.19  E-value=1e-06  Score=68.14  Aligned_cols=25  Identities=40%  Similarity=0.535  Sum_probs=23.2

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +.+++|+|+|||||||++++|++.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999999976

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.17  E-value=3.8e-06  Score=69.76  Aligned_cols=49  Identities=16%  Similarity=0.178  Sum_probs=38.6

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD   65 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~   65 (190)
                      .+.|+++.--+++|+++.|.|++|+|||||+..++......+....+|.
T Consensus        33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS   81 (338)
T 4a1f_A           33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS   81 (338)
T ss_dssp             CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            4567777778999999999999999999999999887644444444544

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.17  E-value=1.6e-05  Score=64.33  Aligned_cols=42  Identities=21%  Similarity=0.359  Sum_probs=33.0

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      ....+.++.|+|||||||||+++.|+..+ +  .+.++++.+.+.
T Consensus        29 ~~~~~~livl~G~sGsGKSTla~~L~~~~-~--~~~~~Is~D~~R   70 (287)
T 1gvn_B           29 AVESPTAFLLGGQPGSGKTSLRSAIFEET-Q--GNVIVIDNDTFK   70 (287)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHT-T--TCCEEECTHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHh-C--CCeEEEechHhH
Confidence            44568899999999999999999998754 2  355778876554

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.17  E-value=1.3e-06  Score=64.01  Aligned_cols=30  Identities=33%  Similarity=0.405  Sum_probs=24.6

Q ss_pred             ccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+++.+| +.+|+|||||||||++.+|.-.+
T Consensus        18 ~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           18 VVEFKEG-INLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence            4445554 88999999999999999998655

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.17  E-value=5e-07  Score=74.54  Aligned_cols=49  Identities=14%  Similarity=0.258  Sum_probs=42.6

Q ss_pred             cCcceeccCccccccccccccCCccE--EEEECCCCCcHHHHHHHHHHHHh
Q 029613            7 STNIFWQESPIGRLERQKLLNQKGCV--VWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus         7 ~~~l~~~~~~~~~l~~~sl~i~~Gei--i~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      -++++..++...+++.++..++.|++  +.|.||+|+||||+++++++.+.
T Consensus        21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence            34566667777889999999999998  99999999999999999999874

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.12  E-value=1.9e-06  Score=64.89  Aligned_cols=43  Identities=28%  Similarity=0.345  Sum_probs=31.3

Q ss_pred             ccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613           22 RQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus        22 ~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      ++|+...+|.+++|+|++||||||+++.|+..+    .|..+++-++
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l----~g~~~id~d~   44 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAEL----DGFQHLEVGK   44 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHHS----TTEEEEEHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHhc----CCCEEeeHHH
Confidence            568888999999999999999999999998862    1344555443

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.11  E-value=2.1e-05  Score=59.04  Aligned_cols=27  Identities=26%  Similarity=0.464  Sum_probs=24.4

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .++.+++|+|++||||||+++.|+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998866

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=98.08  E-value=1.1e-05  Score=70.37  Aligned_cols=42  Identities=12%  Similarity=0.258  Sum_probs=33.7

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHHhh-C-CCcEEEEcCcc
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKELYS-R-GKLSYILDGDN   68 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~-~~g~i~~~g~~   68 (190)
                      .+.|.+++|+|.+||||||+.++|+..+.. . +....++|+++
T Consensus       392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             cccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            467889999999999999999999999842 2 23445777776

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.06  E-value=8.1e-06  Score=67.27  Aligned_cols=28  Identities=32%  Similarity=0.471  Sum_probs=25.3

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      ..+..+.|.||+|+|||||++.+++.+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~   70 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH   70 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            5578999999999999999999999874

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=98.03  E-value=1.9e-06  Score=71.95  Aligned_cols=38  Identities=26%  Similarity=0.238  Sum_probs=34.7

Q ss_pred             ccccccccccCCccE--EEEECCCCCcHHHHHHHHHHHHh
Q 029613           18 GRLERQKLLNQKGCV--VWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        18 ~~l~~~sl~i~~Gei--i~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      .+++.+++.+++|++  ++|+|++||||||++++|++.+.
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            478889999999998  99999999999999999999873

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.02  E-value=2.3e-06  Score=65.28  Aligned_cols=33  Identities=36%  Similarity=0.415  Sum_probs=26.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      .+++|+|+|||||||++++|++ +     |..+++.+.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-l-----g~~~id~d~~   35 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-L-----GVPLVDADVV   35 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-T-----TCCEEEHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-C-----CCcccchHHH
Confidence            3789999999999999999987 3     3346666554

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.02  E-value=3.4e-06  Score=70.21  Aligned_cols=36  Identities=25%  Similarity=0.203  Sum_probs=28.8

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL   64 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~   64 (190)
                      +++.+++|+|+||||||||++.|.+.+. +..+.+.+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-~~~~~v~V  107 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-ERGHKLSV  107 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEE
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhh-hcCCeEEE
Confidence            4588999999999999999999999873 33444443

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.02  E-value=2.4e-06  Score=65.34  Aligned_cols=28  Identities=32%  Similarity=0.283  Sum_probs=25.5

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..+|.+++|+|||||||||+++.|...+
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            4678999999999999999999998865

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=98.02  E-value=2.2e-05  Score=63.27  Aligned_cols=36  Identities=31%  Similarity=0.343  Sum_probs=27.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      .++.|+|++||||||+++.|+..+    .|..+++.+.+.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r   38 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYR   38 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHH
Confidence            578999999999999999998732    245566665543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.00  E-value=5.4e-06  Score=69.31  Aligned_cols=52  Identities=25%  Similarity=0.270  Sum_probs=39.6

Q ss_pred             ccccccccc--ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613           17 IGRLERQKL--LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus        17 ~~~l~~~sl--~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      ...|+.+--  -+.+|+++.|.||||||||||+..++..+...+...++++++.
T Consensus        46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~   99 (356)
T 3hr8_A           46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH   99 (356)
T ss_dssp             CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            344555533  4789999999999999999999999998754444456777654

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.99  E-value=4.1e-06  Score=62.64  Aligned_cols=27  Identities=37%  Similarity=0.474  Sum_probs=23.9

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+|.+++|+|++||||||+++.|+..+
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999999998765

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.99  E-value=3.9e-05  Score=63.40  Aligned_cols=38  Identities=11%  Similarity=0.047  Sum_probs=28.9

Q ss_pred             CCcc--EEEEECCCCCcHHHHHHHHHHHHhhC-CCcEEEEc
Q 029613           28 QKGC--VVWITGLSGSGKSTLAFSVNKELYSR-GKLSYILD   65 (190)
Q Consensus        28 ~~Ge--ii~L~G~nGsGKSTLlr~l~g~l~~~-~~g~i~~~   65 (190)
                      ..+.  .+.|+||+|+||||+++.+++.+... +...++++
T Consensus        40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~   80 (389)
T 1fnn_A           40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN   80 (389)
T ss_dssp             TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence            4456  89999999999999999999987433 23444554

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.99  E-value=7.6e-06  Score=67.06  Aligned_cols=51  Identities=16%  Similarity=0.193  Sum_probs=38.9

Q ss_pred             ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613           16 PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG   66 (190)
Q Consensus        16 ~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g   66 (190)
                      +.+.|+++.--+++|+++.|.|++|+|||||+..++......+...++|..
T Consensus        54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl  104 (315)
T 3bh0_A           54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL  104 (315)
T ss_dssp             SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred             ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence            355678887779999999999999999999999888655333444455543

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.97  E-value=3.7e-06  Score=64.01  Aligned_cols=22  Identities=41%  Similarity=0.474  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +++|+|+|||||||+++.|++ +
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-L   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-T
T ss_pred             EEEEECCCCcCHHHHHHHHHH-C
Confidence            689999999999999999998 5

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.96  E-value=2.5e-06  Score=70.99  Aligned_cols=52  Identities=17%  Similarity=0.050  Sum_probs=37.5

Q ss_pred             ccCcceeccCc---cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCc
Q 029613            6 NSTNIFWQESP---IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKL   60 (190)
Q Consensus         6 ~~~~l~~~~~~---~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g   60 (190)
                      +++++...++.   ..+++++++++.   .++|+|++|||||||++.|.|.-. +.+.|
T Consensus        10 ~l~~~~~~~~~~~~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~   65 (360)
T 3t34_A           10 KIQRACTALGDHGDSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSG   65 (360)
T ss_dssp             HTTTTTTSCSSCCSSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSS
T ss_pred             HHHHHHHhhCccccccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCC
Confidence            46677777753   468999999998   899999999999999999999321 44554

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.92  E-value=4.3e-06  Score=71.27  Aligned_cols=45  Identities=22%  Similarity=0.116  Sum_probs=36.3

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      |+++|+ ++|+...     .+++.+|++++|+||||||||||+++|++++.
T Consensus         7 l~~~~~-~~~~~~~-----~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~   51 (430)
T 1w1w_A            7 LELSNF-KSYRGVT-----KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             EEEESC-SSCCSEE-----EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEeCE-EEECCce-----eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            567777 6776532     24567899999999999999999999999773

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.91  E-value=7.8e-06  Score=62.85  Aligned_cols=32  Identities=31%  Similarity=0.371  Sum_probs=25.3

Q ss_pred             cccccCCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           23 QKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        23 ~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      .++.+.+ .+.+|+|||||||||++.+|.-.+.
T Consensus        17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           17 TVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             EEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            3444555 4899999999999999999976553

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.91  E-value=7.2e-06  Score=60.27  Aligned_cols=34  Identities=29%  Similarity=0.369  Sum_probs=26.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      +++|+|++||||||+++.|+..+.     ..+++.+.+.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~-----~~~i~~d~~~   36 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK-----YPIIKGSSFE   36 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC-----CCEEECCCHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CeeecCcccc
Confidence            789999999999999999998762     2256665543

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.90  E-value=4.6e-05  Score=63.15  Aligned_cols=43  Identities=16%  Similarity=0.109  Sum_probs=34.0

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhh------CCCcEEEEcCcc
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYS------RGKLSYILDGDN   68 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~------~~~g~i~~~g~~   68 (190)
                      -+++|+++.|.|++|||||||+..++.....      .+.+.++++.+.
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            5789999999999999999999999886322      245567776654

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.89  E-value=1.6e-05  Score=62.65  Aligned_cols=46  Identities=24%  Similarity=0.353  Sum_probs=30.9

Q ss_pred             ccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        20 l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      ++++++...+|  +.|+||||+||||++++|++.+.   ...+.+++.++.
T Consensus        37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~---~~~~~i~~~~~~   82 (257)
T 1lv7_A           37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK---VPFFTISGSDFV   82 (257)
T ss_dssp             C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT---CCEEEECSCSST
T ss_pred             HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC---CCEEEEeHHHHH
Confidence            34444555555  88999999999999999999762   224667766553

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.89  E-value=4.9e-05  Score=63.61  Aligned_cols=40  Identities=18%  Similarity=0.215  Sum_probs=28.0

Q ss_pred             CccE-EEEECCCCCcHHHHHHHHHHHHhh----------CCCcEEEEcCcc
Q 029613           29 KGCV-VWITGLSGSGKSTLAFSVNKELYS----------RGKLSYILDGDN   68 (190)
Q Consensus        29 ~Gei-i~L~G~nGsGKSTLlr~l~g~l~~----------~~~g~i~~~g~~   68 (190)
                      .|.. ++|+|+||||||||++.|+|....          +..+.+.++|..
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~  227 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK  227 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence            3444 899999999999999999985421          334667777654

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.86  E-value=1.1e-05  Score=63.08  Aligned_cols=28  Identities=36%  Similarity=0.419  Sum_probs=25.0

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      -.+|.+++|+|++||||||+++.|++.+
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4678999999999999999999999865

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.85  E-value=4.1e-05  Score=62.86  Aligned_cols=43  Identities=16%  Similarity=0.156  Sum_probs=33.9

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhC------CCcEEEEcCcc
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSR------GKLSYILDGDN   68 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~------~~g~i~~~g~~   68 (190)
                      -+++|+++.|.|++|||||||+..++.....+      +...++++.+.
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            57899999999999999999999998764333      45566776553

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.84  E-value=7.5e-06  Score=68.54  Aligned_cols=47  Identities=13%  Similarity=0.126  Sum_probs=41.6

Q ss_pred             cccCccHHHH-------HHHHHhCCC-CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          108 SLISPYRKDR-------DACRAMLPD-SNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       108 ~~lS~g~kqr-------~iarall~~-~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ..+|+||+||       ++|++++.+ |+++  +||||+++||......+.+.+.+.
T Consensus       279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~l--llDEp~~~LD~~~~~~l~~~l~~~  333 (371)
T 3auy_A          279 DNLSGGEQIAVALSLRLAIANALIGNRVECI--ILDEPTVYLDENRRAKLAEIFRKV  333 (371)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEE--EEESTTTTCCHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeE--EEeCCCCcCCHHHHHHHHHHHHHh
Confidence            4699999997       257888899 9999  999999999999999999998863

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.83  E-value=0.00015  Score=62.23  Aligned_cols=41  Identities=24%  Similarity=0.385  Sum_probs=32.9

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      ++.++.++|++|+||||++..|+..+...+.-...++.+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~  139 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW  139 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            57899999999999999999999988655555556666544

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.83  E-value=1.3e-05  Score=59.94  Aligned_cols=27  Identities=33%  Similarity=0.390  Sum_probs=23.7

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      +|.+++|.|++||||||+++.|+..+.
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            367899999999999999999998773

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.83  E-value=4.2e-05  Score=61.40  Aligned_cols=27  Identities=30%  Similarity=0.336  Sum_probs=23.9

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .++..+.|.||+|+||||+++++++.+
T Consensus        52 ~~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           52 APAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            356789999999999999999999865

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.82  E-value=1.3e-05  Score=59.79  Aligned_cols=29  Identities=24%  Similarity=0.188  Sum_probs=25.2

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ....+.+++|+|++||||||+++.|+..+
T Consensus         7 ~~~~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A            7 EFMLLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             TTCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            34567889999999999999999998765

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.81  E-value=2.5e-05  Score=58.81  Aligned_cols=36  Identities=25%  Similarity=0.216  Sum_probs=27.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCC--CcEEEEcC
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRG--KLSYILDG   66 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~--~g~i~~~g   66 (190)
                      .+++|+|++|||||||++.|.+.+...+  .+.+..+.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~   44 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH   44 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence            5899999999999999999999874332  34455544

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.77  E-value=1.4e-05  Score=59.44  Aligned_cols=33  Identities=45%  Similarity=0.552  Sum_probs=26.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      .++|+|++||||||+++.|+..+.     ..+++.+.+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~-----~~~~d~d~~   38 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD-----LVFLDSDFL   38 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT-----CEEEEHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC-----CCEEcccHH
Confidence            589999999999999999998762     246666554

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.77  E-value=1.8e-05  Score=59.07  Aligned_cols=36  Identities=22%  Similarity=0.378  Sum_probs=27.4

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      .+.+++|+|++||||||+++.|+..+.     ..+++.+.+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l~-----~~~i~~d~~   39 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLTK-----RILYDSDKE   39 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHHC-----CCEEEHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEChHH
Confidence            367899999999999999999998661     225555544

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.74  E-value=5.4e-06  Score=62.88  Aligned_cols=41  Identities=27%  Similarity=0.366  Sum_probs=30.4

Q ss_pred             eeccCcc-ccccccccccCCccEEEEECCCCCcHHHHHHHHHH
Q 029613           11 FWQESPI-GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        11 ~~~~~~~-~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      .|+|++. ++++++++..++.. ++|+|++|+|||||++.+.+
T Consensus         6 ~~~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A            6 DWIYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             -------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence            4556553 68899999988875 68999999999999999875

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.74  E-value=1.6e-05  Score=58.20  Aligned_cols=20  Identities=50%  Similarity=0.680  Sum_probs=18.7

Q ss_pred             cEEEEECCCCCcHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSV   50 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l   50 (190)
                      .+++|+|++||||||+++.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            37899999999999999999

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.74  E-value=1.9e-05  Score=62.19  Aligned_cols=26  Identities=31%  Similarity=0.506  Sum_probs=22.9

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+.+++|.||+||||||+++.|+..+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34689999999999999999999866

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=97.74  E-value=4.3e-05  Score=69.88  Aligned_cols=111  Identities=17%  Similarity=0.061  Sum_probs=62.2

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCC--c-EEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHH-Hc
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGK--L-SYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFA-DA  101 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~--g-~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~  101 (190)
                      .+..|+.+.|+||+||||||++.++.... ....  | .+.+-     .        ..........  ..++..+. ..
T Consensus       105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~-~~~~~~g~~ilvl-----~--------P~r~La~q~~--~~l~~~~~~~v  168 (773)
T 2xau_A          105 LYQNNQIMVFVGETGSGKTTQIPQFVLFD-EMPHLENTQVACT-----Q--------PRRVAAMSVA--QRVAEEMDVKL  168 (773)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHHHHH-HCGGGGTCEEEEE-----E--------SCHHHHHHHH--HHHHHHTTCCB
T ss_pred             HHhCCCeEEEECCCCCCHHHHHHHHHHHh-ccccCCCceEEec-----C--------chHHHHHHHH--HHHHHHhCCch
Confidence            34678999999999999999988886643 2211  2 12210     0        0011111110  11111111 00


Q ss_pred             Ccc--------------eeecccCccHHHHH-HHHHhCCCCCeEEEEeeCCch-hhhhcChHHHHHHHH
Q 029613          102 GLI--------------CIASLISPYRKDRD-ACRAMLPDSNFIEVFMNMPLE-LCEARDPKGLYKLAR  154 (190)
Q Consensus       102 ~~~--------------~~~~~lS~g~kqr~-iarall~~~~il~vllDEP~~-~ld~~~~~~~~~~~~  154 (190)
                      +..              ..+...++|+.++. +++.++.+++++  ++|||.. .+|......++..+.
T Consensus       169 ~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~l--IlDEah~R~ld~d~~~~~l~~l~  235 (773)
T 2xau_A          169 GEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCI--ILDEAHERTLATDILMGLLKQVV  235 (773)
T ss_dssp             TTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEE--EECSGGGCCHHHHHHHHHHHHHH
T ss_pred             hheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEE--EecCccccccchHHHHHHHHHHH
Confidence            000              01334678888884 777888888988  9999996 777554444444443

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.74  E-value=3.7e-06  Score=70.28  Aligned_cols=44  Identities=25%  Similarity=0.073  Sum_probs=35.3

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      .+.+.++...|+.+.+.++++|.+      +|+|++|+|||||++.|.+.
T Consensus        17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred             eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence            467888888888888888888876      89999999999999998763

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.74  E-value=3.7e-05  Score=58.52  Aligned_cols=31  Identities=26%  Similarity=0.513  Sum_probs=26.6

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCC
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRG   58 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~   58 (190)
                      ++|.+++|+|++||||||+++.|+..+...+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~   37 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAG   37 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            4688999999999999999999998774333

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.73  E-value=2.3e-05  Score=59.43  Aligned_cols=27  Identities=33%  Similarity=0.490  Sum_probs=24.5

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      +|.+++|.|++||||||+++.|+..+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999999774

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.73  E-value=0.00014  Score=60.64  Aligned_cols=41  Identities=32%  Similarity=0.387  Sum_probs=34.4

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      +++|.++.|.|++|+|||||+..++......+...++++.+
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E  100 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE  100 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            77999999999999999999999887665556667777764

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.72  E-value=2.1e-05  Score=62.42  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+++|+|||||||||+++.|++.+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC
Confidence            368999999999999999999866

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.72  E-value=1.1e-05  Score=60.86  Aligned_cols=29  Identities=28%  Similarity=0.315  Sum_probs=25.5

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ....+.+++|+|++||||||+++.|+..+
T Consensus         8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A            8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            44567899999999999999999999866

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.72  E-value=3.9e-05  Score=57.24  Aligned_cols=34  Identities=32%  Similarity=0.467  Sum_probs=26.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD   65 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~   65 (190)
                      +++|+|++||||||+++.|+..+...+....+++
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~   36 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN   36 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence            6899999999999999999998743343345555

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.72  E-value=2.3e-05  Score=59.67  Aligned_cols=30  Identities=33%  Similarity=0.358  Sum_probs=26.1

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhC
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSR   57 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~   57 (190)
                      .+|.+++|+|++||||||+++.|+..+..+
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~   37 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNN   37 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            468899999999999999999999877433

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.71  E-value=2.3e-05  Score=59.07  Aligned_cols=23  Identities=39%  Similarity=0.585  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +++|+|++||||||+++.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            68999999999999999999977

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.71  E-value=1.1e-05  Score=64.97  Aligned_cols=52  Identities=15%  Similarity=0.161  Sum_probs=37.0

Q ss_pred             CccccccccccccCCc-----------cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613           15 SPIGRLERQKLLNQKG-----------CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG   66 (190)
Q Consensus        15 ~~~~~l~~~sl~i~~G-----------eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g   66 (190)
                      |...+++.+...+..+           ..+.|+||+|+||||++++|++.+...+...+.++.
T Consensus        21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~   83 (311)
T 4fcw_A           21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM   83 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence            5555666666666554           589999999999999999999988433333445543

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=97.71  E-value=0.00014  Score=63.53  Aligned_cols=43  Identities=19%  Similarity=0.291  Sum_probs=32.3

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      ....+++++|.+||||||+++.|+..+...+.....|+.+++.
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r   75 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR   75 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence            3457899999999999999999998775444445556655543

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.69  E-value=2.8e-05  Score=58.11  Aligned_cols=26  Identities=31%  Similarity=0.450  Sum_probs=22.6

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++.+++|+|++||||||+++.|+..+
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35789999999999999999998765

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.69  E-value=2.7e-05  Score=59.88  Aligned_cols=24  Identities=42%  Similarity=0.429  Sum_probs=21.8

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      .+.+++|+|++||||||+++.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999987

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.65  E-value=5.7e-05  Score=56.43  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=25.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL   64 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~   64 (190)
                      +++|+|++||||||+++.|+..+...+-..+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~   34 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY   34 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            689999999999999999998774334433333

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.65  E-value=2.2e-05  Score=58.14  Aligned_cols=26  Identities=31%  Similarity=0.406  Sum_probs=22.5

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      ++|..++|+|++|+|||||++.+.+.
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46788999999999999999999874

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.65  E-value=3.4e-05  Score=58.30  Aligned_cols=26  Identities=27%  Similarity=0.584  Sum_probs=23.6

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +|.+++|+|++||||||+++.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999998754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.65  E-value=3.2e-05  Score=62.74  Aligned_cols=41  Identities=22%  Similarity=0.186  Sum_probs=32.4

Q ss_pred             cccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613           25 LLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus        25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      +.+.++..+.|.||+|+||||++++|++.+   +...+.+++.+
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~   84 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPE   84 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHH
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHH
Confidence            456888999999999999999999999865   34555665433

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.65  E-value=2e-05  Score=64.08  Aligned_cols=27  Identities=26%  Similarity=0.204  Sum_probs=23.4

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -.++.+++|+|+||+|||||++.|.|.
T Consensus         5 ~~r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            5 KSYCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             CCEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHCC
Confidence            345568999999999999999999985

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.64  E-value=2.3e-05  Score=63.55  Aligned_cols=42  Identities=26%  Similarity=0.456  Sum_probs=28.0

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      ++-+++|.|++||||||+++.|...+...+.....++.+++.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~   45 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   45 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence            456899999999999999999998663222224456666654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.63  E-value=3.2e-05  Score=58.33  Aligned_cols=35  Identities=40%  Similarity=0.342  Sum_probs=27.4

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      +..+++|+|++||||||+++.|+..      |..+++.+++
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~------g~~~id~d~~   41 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW------GYPVLDLDAL   41 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT------TCCEEEHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC------CCEEEcccHH
Confidence            3468999999999999999998872      4456666554

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.63  E-value=3.6e-05  Score=58.29  Aligned_cols=23  Identities=48%  Similarity=0.540  Sum_probs=21.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +++|+|++||||||+++.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            89999999999999999999876

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.62  E-value=4.1e-05  Score=56.36  Aligned_cols=25  Identities=36%  Similarity=0.416  Sum_probs=22.4

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      =++++|+|++||||||+++.|+..+
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHh
Confidence            3689999999999999999999866

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.62  E-value=2.1e-05  Score=58.44  Aligned_cols=26  Identities=31%  Similarity=0.694  Sum_probs=19.0

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++.+++|+|++||||||+++.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            56799999999999999999998765

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.62  E-value=4.2e-05  Score=58.88  Aligned_cols=27  Identities=22%  Similarity=0.359  Sum_probs=23.8

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++|.+++|+|++||||||+++.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            356789999999999999999999866

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.62  E-value=0.00054  Score=56.28  Aligned_cols=28  Identities=32%  Similarity=0.445  Sum_probs=24.9

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      ..+..+.|.||+|+||||+++.++..+.
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            5677899999999999999999998773

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.60  E-value=1.7e-05  Score=60.42  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=22.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      +++|.|++||||||+++.|...+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999874

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.59  E-value=5.2e-05  Score=57.50  Aligned_cols=27  Identities=30%  Similarity=0.409  Sum_probs=24.1

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..+.+++|+|++||||||+++.|+..+
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999999866

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.58  E-value=3.5e-05  Score=57.49  Aligned_cols=34  Identities=38%  Similarity=0.404  Sum_probs=26.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      .+++|+|++||||||+++.|+..+.     ..+++.+.+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg-----~~~id~D~~   36 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALG-----VGLLDTDVA   36 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT-----CCEEEHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC-----CCEEeCchH
Confidence            4689999999999999999998662     225665554

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.57  E-value=9.6e-05  Score=56.76  Aligned_cols=40  Identities=13%  Similarity=0.118  Sum_probs=31.2

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      .+..+.|.||+|+||||+++.++..+...+...++++..+
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~   90 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI   90 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence            6789999999999999999999998754444445555443

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.56  E-value=6e-05  Score=59.45  Aligned_cols=42  Identities=24%  Similarity=0.289  Sum_probs=30.6

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhC-----CCcEEEEcCcccc
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSR-----GKLSYILDGDNLR   70 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~-----~~g~i~~~g~~~~   70 (190)
                      ...+++|+|++||||||+++.|+..+..+     +...+.++.+++.
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~   67 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY   67 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence            34689999999999999999998865321     2334566666654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.55  E-value=4.5e-05  Score=57.27  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=20.1

Q ss_pred             ccccccccccCCccEEEEECCCCCcHHHHHHHHHH
Q 029613           18 GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        18 ~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      .+++++++..++. .++++|++|+|||||++.+.+
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence            4678888887776 568999999999999999987

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.54  E-value=0.00011  Score=55.07  Aligned_cols=28  Identities=29%  Similarity=0.234  Sum_probs=24.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCC
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRG   58 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~   58 (190)
                      .+++|+|++|||||||+..|...+...+
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g   32 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVREG   32 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence            4799999999999999999999885433

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.54  E-value=4.7e-05  Score=56.03  Aligned_cols=24  Identities=21%  Similarity=0.459  Sum_probs=21.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+++|+|++||||||+++.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999999866

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.54  E-value=6.5e-05  Score=55.97  Aligned_cols=25  Identities=32%  Similarity=0.517  Sum_probs=22.6

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +.+++|+|++||||||+++.|+..+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998865

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.53  E-value=7.3e-05  Score=58.21  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=26.9

Q ss_pred             cccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           23 QKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        23 ~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+-...+..++.|+||+||||+|.++.|+..+
T Consensus        22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             --CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cchhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            35566788899999999999999999999866

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.52  E-value=4.3e-05  Score=63.87  Aligned_cols=31  Identities=32%  Similarity=0.322  Sum_probs=25.7

Q ss_pred             cccccccCCccEEEEECCCCCcHHHHHHHHHH
Q 029613           21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++..+++.+ .+.+|+|+|||||||++-+|+=
T Consensus        17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EEEEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence            455666666 5889999999999999999974

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.52  E-value=6.8e-05  Score=54.92  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +++|+|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999866

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.49  E-value=7e-05  Score=57.27  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .++|+|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998755

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.49  E-value=7.6e-05  Score=56.52  Aligned_cols=27  Identities=26%  Similarity=0.430  Sum_probs=23.2

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ....+++|+|++||||||+++.|+..+
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            445689999999999999999998754

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.47  E-value=6.1e-05  Score=58.29  Aligned_cols=27  Identities=26%  Similarity=0.357  Sum_probs=22.7

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .++.+++|+|++||||||+++.|+..+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            356789999999999999999998754

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.47  E-value=6.4e-05  Score=57.92  Aligned_cols=26  Identities=27%  Similarity=0.295  Sum_probs=23.3

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+.+++|+|++||||||+++.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999999876

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.47  E-value=9e-05  Score=58.29  Aligned_cols=28  Identities=25%  Similarity=0.341  Sum_probs=24.8

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      -.++.+++|+|++||||||+++.|+..+
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3577899999999999999999998755

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.46  E-value=5.4e-05  Score=55.38  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      ..++|+|+||+|||||++.+.+.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999874

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.43  E-value=0.00018  Score=54.41  Aligned_cols=26  Identities=27%  Similarity=0.382  Sum_probs=23.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhh
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYS   56 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~   56 (190)
                      ..+.|.||+|+|||||+++|+..+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~   80 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAK   80 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            68899999999999999999997743

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.43  E-value=7.3e-05  Score=56.83  Aligned_cols=22  Identities=45%  Similarity=0.555  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +.|+||||||||||++.|....
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6899999999999999987654

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.42  E-value=0.0002  Score=55.49  Aligned_cols=36  Identities=31%  Similarity=0.331  Sum_probs=28.5

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEE
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI   63 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~   63 (190)
                      .+|.+++|.|++||||||+++.|...+...+...+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~   39 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQL   39 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc
Confidence            468899999999999999999999988544433333

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.42  E-value=0.00014  Score=61.02  Aligned_cols=37  Identities=27%  Similarity=0.220  Sum_probs=29.1

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD   65 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~   65 (190)
                      .+..++|+|++||||||+++.|...+...+...+.+|
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D   70 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID   70 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            5778899999999999999999987754444444554

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.41  E-value=7.9e-05  Score=63.04  Aligned_cols=29  Identities=24%  Similarity=0.157  Sum_probs=25.2

Q ss_pred             cccCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613           25 LLNQKGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -.+..+..++|+|+||+|||||+++|.|.
T Consensus        17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             hhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            35677889999999999999999999985

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.41  E-value=8.6e-05  Score=56.84  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .++|+|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997754

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.40  E-value=0.0001  Score=56.71  Aligned_cols=26  Identities=35%  Similarity=0.399  Sum_probs=23.3

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +|..++|+|++||||||+++.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999999866

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.39  E-value=0.00011  Score=55.96  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=27.8

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      ...+++|+|..||||||+++.|+..+     |..+++.+.+
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~l-----g~~vid~D~~   46 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKY-----GAHVVNVDRI   46 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhc-----CCEEEECcHH
Confidence            45789999999999999999998854     2345665444

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.36  E-value=9.7e-05  Score=63.07  Aligned_cols=39  Identities=26%  Similarity=0.210  Sum_probs=29.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHh-----------hCCCcEEEEcCccc
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELY-----------SRGKLSYILDGDNL   69 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~-----------~~~~g~i~~~g~~~   69 (190)
                      -.++|+|+||+|||||++.|.|...           .+..|.+.++|..+
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~  230 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY  230 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence            4789999999999999999998532           13456677777644

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.35  E-value=9.9e-05  Score=54.67  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -.++|+|++|+|||||++.+++.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999873

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.32  E-value=0.00015  Score=56.07  Aligned_cols=23  Identities=35%  Similarity=0.411  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +++|+|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998866

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.31  E-value=0.00019  Score=55.86  Aligned_cols=27  Identities=33%  Similarity=0.450  Sum_probs=23.9

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..+..++|+|++||||||+++.|+..+
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345789999999999999999999876

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.29  E-value=0.00042  Score=50.84  Aligned_cols=28  Identities=14%  Similarity=0.251  Sum_probs=24.2

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      ..+..+.|.||+|+||||+++.++..+.
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            4456789999999999999999998774

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.29  E-value=0.00022  Score=57.99  Aligned_cols=37  Identities=24%  Similarity=0.251  Sum_probs=27.9

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD   65 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~   65 (190)
                      .+..+.|.||+|+|||||+++|+..+...+...++++
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~   72 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS   72 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            4568899999999999999999998743333334443

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.28  E-value=8.9e-05  Score=55.18  Aligned_cols=22  Identities=41%  Similarity=0.515  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++|+|++|+|||||++.+++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999873

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.27  E-value=0.0011  Score=56.57  Aligned_cols=51  Identities=16%  Similarity=0.130  Sum_probs=38.7

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEEEEcCc
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSYILDGD   67 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i~~~g~   67 (190)
                      ...|+.+.--+++|+++.|.|++|+|||||+..++..... .+...++|..+
T Consensus       187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE  238 (444)
T 2q6t_A          187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE  238 (444)
T ss_dssp             CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            3456666656899999999999999999999999886633 34445666543

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.26  E-value=0.00034  Score=55.10  Aligned_cols=31  Identities=35%  Similarity=0.431  Sum_probs=27.0

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCC
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGK   59 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~   59 (190)
                      +|.+++|.|++||||||+++.|...+...+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~   56 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGI   56 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence            5889999999999999999999998854443

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.26  E-value=8.3e-05  Score=56.66  Aligned_cols=37  Identities=24%  Similarity=0.201  Sum_probs=27.9

Q ss_pred             cccccccccCCcc---EEEEECCCCCcHHHHHHHHHHHHh
Q 029613           19 RLERQKLLNQKGC---VVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        19 ~l~~~sl~i~~Ge---ii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      .++.+.-.+..|.   .+.|.||+|+||||+++.++..+.
T Consensus        31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3444444444444   889999999999999999998773

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.25  E-value=0.00016  Score=58.10  Aligned_cols=24  Identities=42%  Similarity=0.545  Sum_probs=21.4

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      ...+++|+|++||||||+++.|+.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999984

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.25  E-value=0.00018  Score=55.06  Aligned_cols=23  Identities=22%  Similarity=0.231  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .++|+|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998865

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.24  E-value=0.00021  Score=55.05  Aligned_cols=23  Identities=35%  Similarity=0.445  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++.|+||+||||+|.++.|+..+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999866

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.24  E-value=0.00015  Score=59.22  Aligned_cols=41  Identities=22%  Similarity=0.282  Sum_probs=31.3

Q ss_pred             CccccccccccccCCc--cEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           15 SPIGRLERQKLLNQKG--CVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        15 ~~~~~l~~~sl~i~~G--eii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      +...+++.+...+..|  ..+.|.||+|+||||+++++++.+.
T Consensus        41 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           41 AQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             SCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3344556666666655  4489999999999999999999874

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.23  E-value=0.00034  Score=54.19  Aligned_cols=30  Identities=33%  Similarity=0.426  Sum_probs=26.7

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCC
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRG   58 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~   58 (190)
                      +|.++.+.|++||||||.++.|...+...+
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~   31 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLG   31 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            488999999999999999999999886544

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.20  E-value=0.0027  Score=54.21  Aligned_cols=46  Identities=30%  Similarity=0.383  Sum_probs=34.9

Q ss_pred             ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC-CCcEEEEcCccc
Q 029613           24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR-GKLSYILDGDNL   69 (190)
Q Consensus        24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~-~~g~i~~~g~~~   69 (190)
                      ++.-.+..+++++|++|+||||++-.|+..+... |.-...++.+..
T Consensus        94 ~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~  140 (433)
T 2xxa_A           94 NLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY  140 (433)
T ss_dssp             CCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence            3333456799999999999999999999888555 666667776653

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.20  E-value=0.00029  Score=55.15  Aligned_cols=29  Identities=24%  Similarity=0.358  Sum_probs=23.2

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhh
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYS   56 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~   56 (190)
                      .+|.+++|.|++||||||+++.|...+..
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~   51 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE   51 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            47999999999999999999999988843

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.18  E-value=0.0002  Score=54.81  Aligned_cols=25  Identities=36%  Similarity=0.448  Sum_probs=22.3

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +.+++|+|++||||||+++.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4679999999999999999998854

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.18  E-value=0.0002  Score=64.39  Aligned_cols=31  Identities=26%  Similarity=0.157  Sum_probs=26.3

Q ss_pred             ccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++.++++..++|+|++|+|||||++.|.+..
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~   33 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKT   33 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhc
Confidence            4677899999999999999999999999865

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.17  E-value=0.00025  Score=56.45  Aligned_cols=28  Identities=29%  Similarity=0.316  Sum_probs=24.6

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +.++.-+.|.||+|+||||++++++..+
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4567779999999999999999999865

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.13  E-value=0.00036  Score=54.47  Aligned_cols=30  Identities=23%  Similarity=0.349  Sum_probs=26.3

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHHhh
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKELYS   56 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~   56 (190)
                      -.+|.+++|.|++||||||+++.|...+..
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            357899999999999999999999998854

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.13  E-value=0.00021  Score=55.63  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=21.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      -.++|+|++|+|||||++.|.|.-
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCC
Confidence            467999999999999999999854

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.11  E-value=0.00062  Score=49.91  Aligned_cols=28  Identities=14%  Similarity=0.200  Sum_probs=24.0

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      ..+..+.|.||+|+||||+++.++..+.
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3456778999999999999999998773

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.09  E-value=0.0003  Score=58.34  Aligned_cols=24  Identities=33%  Similarity=0.570  Sum_probs=22.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+++|+||+|||||||++.|+..+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHc
Confidence            489999999999999999999866

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=97.08  E-value=0.00073  Score=51.91  Aligned_cols=32  Identities=25%  Similarity=0.290  Sum_probs=26.1

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEE
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSY   62 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i   62 (190)
                      |.+++|-|+.||||||+++.|...+ ..+...+
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L-~~~~~v~   33 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRL-VKDYDVI   33 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHH-TTTSCEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHH-HCCCCEE
Confidence            5689999999999999999999988 4444333

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.07  E-value=0.00048  Score=53.87  Aligned_cols=38  Identities=24%  Similarity=0.218  Sum_probs=27.9

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      ....-+.|.||+|+||||++++++..+.   ...+.++..+
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~---~~~~~~~~~~   74 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQ---VPFLAMAGAE   74 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHT---CCEEEEETTT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhC---CCEEEechHH
Confidence            4455688999999999999999998762   2234555443

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.07  E-value=0.0044  Score=50.95  Aligned_cols=28  Identities=21%  Similarity=0.304  Sum_probs=24.2

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      ..+..+.|.||+|+||||+++.++..+.
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~~   70 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEIE   70 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999998763

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.07  E-value=0.00053  Score=63.21  Aligned_cols=39  Identities=21%  Similarity=0.286  Sum_probs=30.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      ..+.|+||+|+|||+++++|+..+...+...+.++...+
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~  627 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY  627 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc
Confidence            478899999999999999999988543445566765544

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.06  E-value=0.00023  Score=56.64  Aligned_cols=23  Identities=22%  Similarity=0.212  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .++|+|++|||||||++.|.|..
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999854

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.04  E-value=0.00018  Score=56.78  Aligned_cols=28  Identities=39%  Similarity=0.482  Sum_probs=23.1

Q ss_pred             cccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           25 LLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .....|  +.|.||+|+||||++++|+..+
T Consensus        41 ~~~~~~--vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           41 AKIPKG--VLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             CCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred             CCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence            344444  7799999999999999999876

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.03  E-value=0.00082  Score=50.64  Aligned_cols=31  Identities=32%  Similarity=0.195  Sum_probs=22.3

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCC
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGK   59 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~   59 (190)
                      +|.++.++|+.||||||++.-++..+...+.
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~   32 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKK   32 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence            4889999999999999998444433323343

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=97.02  E-value=0.00048  Score=53.48  Aligned_cols=28  Identities=32%  Similarity=0.478  Sum_probs=25.5

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      .+|.++.+.|++||||||+++.|...+.
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3689999999999999999999999873

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.01  E-value=0.00038  Score=54.31  Aligned_cols=26  Identities=27%  Similarity=0.174  Sum_probs=23.4

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +|.+++|.|..||||||+++.|+..+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            36789999999999999999999866

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.01  E-value=0.00073  Score=56.04  Aligned_cols=39  Identities=33%  Similarity=0.394  Sum_probs=29.2

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD   65 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~   65 (190)
                      .....+++|+|++|+|||||+..|+..+...+.-...++
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~  114 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA  114 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence            345668999999999999999999987744444333443

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.00042  Score=51.47  Aligned_cols=25  Identities=24%  Similarity=0.297  Sum_probs=21.6

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      +.-.++|+|++|+|||||++.+.+.
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3347899999999999999999874

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.99  E-value=0.00029  Score=54.82  Aligned_cols=30  Identities=27%  Similarity=0.199  Sum_probs=24.1

Q ss_pred             cccccCCccEEEEECCCCCcHHHHHHHHHH
Q 029613           23 QKLLNQKGCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        23 ~sl~i~~Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      +-..+..|+.+.+.|++||||||++..+..
T Consensus        69 ~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           69 ILEAISQNSVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             HHHHHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence            334456799999999999999998877653

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.98  E-value=0.00042  Score=57.04  Aligned_cols=24  Identities=25%  Similarity=0.552  Sum_probs=21.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .++.|+||+||||||+++.|+..+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999865

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.98  E-value=0.00046  Score=49.72  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++++|++|+|||||++.+.+.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999874

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.97  E-value=0.001  Score=53.40  Aligned_cols=29  Identities=28%  Similarity=0.321  Sum_probs=24.7

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhh
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYS   56 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~   56 (190)
                      .++..+.|.||+|+||||++++++..+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~~   93 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLHR   93 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            44557899999999999999999988743

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.94  E-value=0.00052  Score=49.19  Aligned_cols=22  Identities=32%  Similarity=0.397  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++++|++|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999988763

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.94  E-value=0.00035  Score=57.32  Aligned_cols=37  Identities=35%  Similarity=0.282  Sum_probs=30.0

Q ss_pred             CccccccccccccCCccEEEEECCCCCcHHHHHHHHHH
Q 029613           15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      .....+++..+.+ .|.-+.|+|+||+||||++..+.+
T Consensus       130 ~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          130 ARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             CEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            3445667766666 788999999999999999998876

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.94  E-value=0.00053  Score=56.79  Aligned_cols=27  Identities=26%  Similarity=0.509  Sum_probs=23.5

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .++.++.|+||+|||||||+..|+..+
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence            356799999999999999999998754

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.93  E-value=0.00055  Score=49.01  Aligned_cols=22  Identities=36%  Similarity=0.341  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++++|++|+|||||++.+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.92  E-value=0.00055  Score=49.10  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++++|++|+|||||++.+.+.
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999874

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.92  E-value=0.00049  Score=49.18  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++++|++|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999874

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.90  E-value=0.0006  Score=49.17  Aligned_cols=23  Identities=26%  Similarity=0.444  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      -++++|++|+|||||++.+.+.-
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998743

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.89  E-value=0.0007  Score=57.86  Aligned_cols=26  Identities=27%  Similarity=0.275  Sum_probs=23.4

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      +..+.|.||+|+|||||+++|++.+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~  155 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVV  155 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999774

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.88  E-value=0.00061  Score=49.04  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++++|++|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.88  E-value=0.00062  Score=49.67  Aligned_cols=23  Identities=35%  Similarity=0.400  Sum_probs=20.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++++|++|+|||||++.+.+.
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35789999999999999998774

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.88  E-value=0.00063  Score=49.13  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++++|++|+|||||++.+.+.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5789999999999999999864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.87  E-value=0.00063  Score=48.89  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++++|++|+|||||++.+.+.
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999873

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.87  E-value=0.00084  Score=54.17  Aligned_cols=28  Identities=25%  Similarity=0.170  Sum_probs=23.8

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .++...+.|.||+|+|||+|+++|+..+
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3445677888999999999999999876

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.87  E-value=0.00062  Score=52.36  Aligned_cols=35  Identities=31%  Similarity=0.272  Sum_probs=26.3

Q ss_pred             ccccccccccCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613           18 GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        18 ~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      ..++...+.+ .|..+.|+||+|||||||+..|+..
T Consensus        23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3444444443 5788999999999999999988653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.87  E-value=0.00065  Score=49.49  Aligned_cols=22  Identities=32%  Similarity=0.323  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++++|++|+|||||++.+.+.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999763

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=96.86  E-value=0.0014  Score=49.87  Aligned_cols=33  Identities=33%  Similarity=0.403  Sum_probs=26.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL   64 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~   64 (190)
                      +++|-|..||||||.++.|...+...|...+..
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t   34 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK   34 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            578889999999999999999886655544443

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.85  E-value=0.0011  Score=55.36  Aligned_cols=42  Identities=24%  Similarity=0.333  Sum_probs=33.6

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      -+++|.++.|.|++|+|||||+..++......+...++++.+
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E  111 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE  111 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence            467999999999999999999988877654455556677654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.85  E-value=0.00055  Score=49.37  Aligned_cols=21  Identities=38%  Similarity=0.487  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -++++|++|+|||||++.+.+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            578999999999999999886

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.85  E-value=0.0006  Score=49.17  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++++|++|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999999863

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.85  E-value=0.0005  Score=49.93  Aligned_cols=22  Identities=32%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++|+|++|+|||||++.+.+.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            4789999999999999998764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.84  E-value=0.00069  Score=57.90  Aligned_cols=40  Identities=28%  Similarity=0.467  Sum_probs=30.8

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      ..+++++|++|+||||++..|++.+...+.-..+++.+..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~  138 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY  138 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence            4699999999999999999999988544444556665543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.84  E-value=0.00079  Score=56.28  Aligned_cols=23  Identities=43%  Similarity=0.496  Sum_probs=21.0

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      |..++|+|.+|+|||||++.|.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~   24 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTK   24 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            35689999999999999999998

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.84  E-value=0.00075  Score=49.18  Aligned_cols=26  Identities=31%  Similarity=0.353  Sum_probs=22.1

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      ++.-.++|+|++|+|||||++.+.+.
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34567899999999999999998763

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.83  E-value=0.00072  Score=55.51  Aligned_cols=25  Identities=28%  Similarity=0.352  Sum_probs=22.0

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +.+++|+||+|||||||+..|+..+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4688999999999999999998754

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.0036  Score=53.51  Aligned_cols=41  Identities=20%  Similarity=0.124  Sum_probs=30.0

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      .+++..=+.|.||+|+|||+|++++++.+   +.--+.+.+.++
T Consensus       211 g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l  251 (434)
T 4b4t_M          211 GIRAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQL  251 (434)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGG
T ss_pred             CCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhh
Confidence            34555667899999999999999999976   233455555444

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.82  E-value=0.00066  Score=49.48  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=20.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35789999999999999999874

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.82  E-value=0.0013  Score=53.85  Aligned_cols=25  Identities=32%  Similarity=0.523  Sum_probs=22.3

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..++.|+||+|||||||+..|+..+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4688999999999999999998755

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.81  E-value=0.0012  Score=50.93  Aligned_cols=37  Identities=30%  Similarity=0.302  Sum_probs=28.8

Q ss_pred             Ccccccccccc-ccCCccEEEEECCCCCcHHHHHHHHH
Q 029613           15 SPIGRLERQKL-LNQKGCVVWITGLSGSGKSTLAFSVN   51 (190)
Q Consensus        15 ~~~~~l~~~sl-~i~~Geii~L~G~nGsGKSTLlr~l~   51 (190)
                      .+.+.|+++-- -+++|+++.|.|++|+||||++--++
T Consensus        14 TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           14 SGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             CSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            34555666533 47899999999999999999987654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.81  E-value=0.00076  Score=48.52  Aligned_cols=28  Identities=25%  Similarity=0.402  Sum_probs=23.6

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ...+.-+.|.||+|+|||+++++|....
T Consensus        21 a~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           21 SETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             TTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             hCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3556678999999999999999998754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.81  E-value=0.00073  Score=49.96  Aligned_cols=23  Identities=22%  Similarity=0.096  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      -++|+|++|+|||||++.+.+..
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            57899999999999999998854

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.81  E-value=0.00076  Score=48.52  Aligned_cols=22  Identities=32%  Similarity=0.368  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++++|++|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999863

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.81  E-value=0.0029  Score=53.58  Aligned_cols=40  Identities=25%  Similarity=0.219  Sum_probs=28.9

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      +.+..=+.|.||+|+|||+|++++++.+   +..-+.+.+.++
T Consensus       179 i~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l  218 (405)
T 4b4t_J          179 IAQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAEL  218 (405)
T ss_dssp             CCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGG
T ss_pred             CCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHh
Confidence            4444447799999999999999999976   333455555444

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.80  E-value=0.00036  Score=55.17  Aligned_cols=27  Identities=22%  Similarity=0.154  Sum_probs=23.6

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .++.+++|.|+.||||||+++.|+..+
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            577899999999999999999988755

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.80  E-value=0.00077  Score=49.90  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.6

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999999874

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.80  E-value=0.0032  Score=53.73  Aligned_cols=40  Identities=20%  Similarity=0.232  Sum_probs=29.3

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      +.+..=+.|.||+|+|||++++++++.+   +...+.+++.++
T Consensus       203 ~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l  242 (428)
T 4b4t_K          203 IDPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEF  242 (428)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGT
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchh
Confidence            4445557899999999999999999976   333455555443

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.80  E-value=0.00079  Score=49.49  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++|+|++|+|||||++.+.+.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999874

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.78  E-value=0.0008  Score=49.55  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++|+|++|+|||||++.+.+.
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999873

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.78  E-value=0.0008  Score=50.00  Aligned_cols=23  Identities=30%  Similarity=0.406  Sum_probs=20.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            45799999999999999999874

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.78  E-value=0.0019  Score=50.32  Aligned_cols=37  Identities=19%  Similarity=0.165  Sum_probs=27.0

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL   64 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~   64 (190)
                      .+|.++.++|+.|+||||++.-++..+...+.-.+++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~   46 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF   46 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            5689999999999999998777666554444444444

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.77  E-value=0.00061  Score=49.26  Aligned_cols=21  Identities=48%  Similarity=0.504  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -++|+|++|+|||||++.+.+
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            368999999999999999864

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.77  E-value=0.00063  Score=54.51  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -.++|+|++|+|||||++.++|.
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            35899999999999999999984

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.76  E-value=0.00086  Score=48.45  Aligned_cols=24  Identities=29%  Similarity=0.563  Sum_probs=20.7

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      .--++++|++|+|||||++.+.+-
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999763

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.75  E-value=0.0017  Score=55.86  Aligned_cols=39  Identities=15%  Similarity=0.192  Sum_probs=29.0

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG   66 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g   66 (190)
                      ....++.++|.+||||||+++.|+..+.........++.
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~   75 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV   75 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEec
Confidence            445689999999999999999999877544444445443

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.74  E-value=0.00099  Score=52.25  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.7

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..-++|+|++||||||+++.|+..+
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHh
Confidence            3468999999999999999998866

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.74  E-value=0.00092  Score=48.01  Aligned_cols=22  Identities=23%  Similarity=0.533  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++++|++|+|||||++.+.+--
T Consensus         3 i~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6899999999999999997643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.74  E-value=0.00043  Score=49.94  Aligned_cols=21  Identities=38%  Similarity=0.434  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -++|+|++|+|||||++.+.+
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            478999999999999999875

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.73  E-value=0.002  Score=52.48  Aligned_cols=29  Identities=31%  Similarity=0.397  Sum_probs=25.1

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHHh-hCC
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKELY-SRG   58 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l~-~~~   58 (190)
                      +.-+.|.||+|+|||+|+++|+..+. ..+
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g  181 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG  181 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence            67899999999999999999998775 444

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.72  E-value=0.0016  Score=55.68  Aligned_cols=40  Identities=23%  Similarity=0.179  Sum_probs=28.9

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      .+.+..=+.|.||+|+|||+|+++|++.+   +.-.+.+.+.+
T Consensus       211 g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~  250 (437)
T 4b4t_L          211 GIKPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASG  250 (437)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGG
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhh
Confidence            34555667899999999999999999976   23334444433

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.72  E-value=0.00095  Score=48.88  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=20.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            45789999999999999999874

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.72  E-value=0.00096  Score=48.49  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=20.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35789999999999999999874

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.72  E-value=0.00062  Score=50.57  Aligned_cols=25  Identities=24%  Similarity=0.167  Sum_probs=21.4

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      .--.++|+|++|+|||||++.+.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457899999999999999999763

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.72  E-value=0.00092  Score=50.90  Aligned_cols=25  Identities=32%  Similarity=0.339  Sum_probs=22.3

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      --.++|+|++|+|||||++.|++.+
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3588999999999999999998865

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.72  E-value=0.00095  Score=49.38  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++++|.+|+|||||++.+.+.
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46889999999999999999874

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.72  E-value=0.00097  Score=48.67  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=20.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            35789999999999999998874

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.71  E-value=0.0015  Score=53.85  Aligned_cols=41  Identities=20%  Similarity=0.285  Sum_probs=30.4

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHHhhC--CCcEEEEcCcc
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSR--GKLSYILDGDN   68 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~--~~g~i~~~g~~   68 (190)
                      +.+| ++-|.||+|||||||+-.++......  +...++++.+.
T Consensus        26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~   68 (333)
T 3io5_A           26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF   68 (333)
T ss_dssp             BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            6789 89999999999999966665544332  55567777654

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.71  E-value=0.00078  Score=54.88  Aligned_cols=28  Identities=21%  Similarity=0.222  Sum_probs=25.5

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -+++|+++.|.|++|+|||||+..++..
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5689999999999999999999988864

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.70  E-value=0.00087  Score=56.11  Aligned_cols=22  Identities=41%  Similarity=0.502  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      .++|+|++|+|||||++.|.+.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999986

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.70  E-value=0.00089  Score=48.66  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++|+|++|+|||||++.+.+.
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999998863

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.70  E-value=0.0012  Score=54.02  Aligned_cols=28  Identities=32%  Similarity=0.310  Sum_probs=24.0

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..+..-+.|.||+|+|||+|+++++..+
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           42 RTPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence            3455778899999999999999999865

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.70  E-value=0.00088  Score=48.81  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++|+|++|+|||||++.+.+.
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5789999999999999999753

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.69  E-value=0.0011  Score=49.63  Aligned_cols=24  Identities=25%  Similarity=0.632  Sum_probs=21.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      .+.|.||+|+||||+++.++..+.
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~~   63 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDLF   63 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHh
Confidence            489999999999999999998763

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.69  E-value=0.00067  Score=50.15  Aligned_cols=23  Identities=30%  Similarity=0.250  Sum_probs=20.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -.++|+|++|+|||||++.+.+.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46889999999999999998774

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.69  E-value=0.00057  Score=49.81  Aligned_cols=22  Identities=36%  Similarity=0.493  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++|+|++|+|||||++.+.+.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.69  E-value=0.00099  Score=50.54  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=21.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      -.++|+|++|+|||||++.+.+..
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            468899999999999999998743

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.69  E-value=0.0011  Score=48.48  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++|+|++|+|||||++.+.+.
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5789999999999999998874

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.68  E-value=0.0004  Score=59.61  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=27.2

Q ss_pred             cccccccCCccE--EEEECCCCCcHHHHHHHHHHHH
Q 029613           21 ERQKLLNQKGCV--VWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        21 ~~~sl~i~~Gei--i~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +.+...+..|.+  +.|.||+|+||||++++|+..+
T Consensus        39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~   74 (447)
T 3pvs_A           39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA   74 (447)
T ss_dssp             SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence            445555556664  8899999999999999999865

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.67  E-value=0.0005  Score=50.93  Aligned_cols=25  Identities=28%  Similarity=0.453  Sum_probs=21.2

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      +.-.++|+|++|+|||||++.+.+.
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            3456899999999999999998763

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.67  E-value=0.0012  Score=51.00  Aligned_cols=29  Identities=21%  Similarity=0.190  Sum_probs=25.0

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+++...+.|.||+|+||||++.+|+..+
T Consensus        54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           54 GTPKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            35555679999999999999999999977

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.66  E-value=0.0011  Score=49.60  Aligned_cols=23  Identities=35%  Similarity=0.341  Sum_probs=20.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            35789999999999999999874

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.65  E-value=0.001  Score=48.92  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=20.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45789999999999999999864

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.65  E-value=0.0011  Score=49.48  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=20.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35789999999999999998864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.65  E-value=0.0012  Score=49.14  Aligned_cols=23  Identities=35%  Similarity=0.232  Sum_probs=19.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+-
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36789999999999999776653

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.64  E-value=0.0031  Score=49.28  Aligned_cols=40  Identities=25%  Similarity=0.253  Sum_probs=30.8

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      ..+.-++.++|..|+||||++..|+..+. .+.-...++.+
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D   50 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLD   50 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECC
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence            34567889999999999999999998775 55445556544

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.64  E-value=0.0042  Score=53.44  Aligned_cols=41  Identities=20%  Similarity=0.131  Sum_probs=30.3

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      .+.+..=+.|.||+|+|||+|+++|++.+   +.--+.+.+.++
T Consensus       239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L  279 (467)
T 4b4t_H          239 GIDPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSEL  279 (467)
T ss_dssp             TCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGG
T ss_pred             CCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHh
Confidence            45566667899999999999999999976   233445555444

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.64  E-value=0.0012  Score=49.00  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35789999999999999999874

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.64  E-value=0.00071  Score=49.86  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++|+|++|+|||||++.+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            3689999999999999998774

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.64  E-value=0.00096  Score=54.18  Aligned_cols=22  Identities=36%  Similarity=0.291  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      .++|+|++|+|||||++.|.|.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999874

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.63  E-value=0.00097  Score=54.21  Aligned_cols=24  Identities=33%  Similarity=0.202  Sum_probs=21.3

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --+++|+|++|+|||||++.|.|.
T Consensus        10 ~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           10 VGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            347899999999999999999884

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.63  E-value=0.0011  Score=49.05  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++++|++|+|||||++.+.+.
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999874

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.63  E-value=0.0058  Score=52.14  Aligned_cols=42  Identities=24%  Similarity=0.192  Sum_probs=30.9

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      .+.+..=+.|.||+|+|||+|+++|++.+   +.--+.+.+.++.
T Consensus       212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~  253 (437)
T 4b4t_I          212 GIKPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELI  253 (437)
T ss_dssp             TCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGC
T ss_pred             CCCCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhh
Confidence            34455558899999999999999999976   3334566665543

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.62  E-value=0.0013  Score=52.47  Aligned_cols=26  Identities=23%  Similarity=0.295  Sum_probs=22.8

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+.-+.|.||+|+||||+++.++..+
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            34567899999999999999999877

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.62  E-value=0.0012  Score=48.30  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++++|++|+|||||++.+.+-
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999998763

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.62  E-value=0.0012  Score=48.90  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=20.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            35889999999999999999874

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.62  E-value=0.0034  Score=53.84  Aligned_cols=34  Identities=18%  Similarity=0.253  Sum_probs=25.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      -+.|+||+|+||||++++|++.+ .  ...+.++...
T Consensus        52 ~iLl~GppGtGKT~lar~lA~~l-~--~~~~~v~~~~   85 (444)
T 1g41_A           52 NILMIGPTGVGKTEIARRLAKLA-N--APFIKVEATK   85 (444)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT-T--CCEEEEEGGG
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHc-C--CCceeecchh
Confidence            47899999999999999999977 2  2344555433

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.61  E-value=0.0012  Score=48.35  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45789999999999999998864

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.61  E-value=0.0015  Score=51.60  Aligned_cols=28  Identities=29%  Similarity=0.321  Sum_probs=24.0

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..+...+.|.||+|+||||++++++..+
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            3456678899999999999999999865

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.61  E-value=0.0011  Score=49.18  Aligned_cols=23  Identities=35%  Similarity=0.440  Sum_probs=20.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+-
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCcHHHHHHHHHcC
Confidence            45889999999999999999873

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.60  E-value=0.0014  Score=53.86  Aligned_cols=27  Identities=33%  Similarity=0.604  Sum_probs=24.2

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+|..+.|.||+|+||||+++.++..+
T Consensus        68 ~~~~~vLl~GppGtGKT~la~~la~~l   94 (368)
T 3uk6_A           68 IAGRAVLIAGQPGTGKTAIAMGMAQAL   94 (368)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            346789999999999999999999987

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.60  E-value=0.0026  Score=55.40  Aligned_cols=40  Identities=28%  Similarity=0.359  Sum_probs=29.7

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      .+..+++|+|++||||||++..|+..+...+.-...++.+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D  138 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD  138 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            4567999999999999999999998775445545555554

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.60  E-value=0.0013  Score=49.46  Aligned_cols=25  Identities=32%  Similarity=0.343  Sum_probs=21.3

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -.|.-+.|.|+||+||||++..+..
T Consensus        14 v~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           14 IDKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            4577889999999999999987754

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.59  E-value=0.00086  Score=55.59  Aligned_cols=26  Identities=31%  Similarity=0.250  Sum_probs=22.6

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      ...-.++++|+||+|||||++.|++.
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~  190 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTA  190 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35568999999999999999999874

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.59  E-value=0.0014  Score=55.55  Aligned_cols=25  Identities=32%  Similarity=0.554  Sum_probs=22.4

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..+++|+||+|||||||+..|+..+
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHC
Confidence            3578999999999999999999876

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.59  E-value=0.0011  Score=52.11  Aligned_cols=39  Identities=21%  Similarity=0.091  Sum_probs=28.2

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD   65 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~   65 (190)
                      ...+.-+.|.|++|+|||++++.|.......+...+.++
T Consensus        26 ~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~   64 (265)
T 2bjv_A           26 APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN   64 (265)
T ss_dssp             TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred             hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence            345667889999999999999999886532223345554

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.59  E-value=0.0012  Score=49.22  Aligned_cols=23  Identities=26%  Similarity=0.405  Sum_probs=20.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35799999999999999999874

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.58  E-value=0.0017  Score=52.88  Aligned_cols=27  Identities=33%  Similarity=0.404  Sum_probs=23.4

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+..-+.|.||+|+|||+++++++..+
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            445678999999999999999999865

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.58  E-value=0.0012  Score=54.61  Aligned_cols=26  Identities=31%  Similarity=0.441  Sum_probs=23.0

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++..+.|.||+|+||||++++|+..+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            45678899999999999999999865

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.57  E-value=0.0014  Score=48.53  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+-
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35789999999999999998763

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.57  E-value=0.0024  Score=54.66  Aligned_cols=51  Identities=16%  Similarity=0.221  Sum_probs=38.3

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      .+.|+.+.--+++|+++.|.|++|+|||||+.-++......+...++|..+
T Consensus       184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE  234 (444)
T 3bgw_A          184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  234 (444)
T ss_dssp             CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence            345666655689999999999999999999988877653345556666543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.57  E-value=0.0014  Score=49.49  Aligned_cols=35  Identities=17%  Similarity=0.164  Sum_probs=24.9

Q ss_pred             cccccccccCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613           19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      ...+..|.-...--++++|++|+|||||++.+.+.
T Consensus        14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           14 GTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             -----CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence            44555555555567899999999999999999873

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.56  E-value=0.0018  Score=47.29  Aligned_cols=23  Identities=22%  Similarity=0.112  Sum_probs=20.2

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      .--++++|++|+|||||++.+.+
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            34688999999999999999876

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.56  E-value=0.00041  Score=56.52  Aligned_cols=38  Identities=16%  Similarity=0.168  Sum_probs=30.0

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..+++.+...+..|.-+.|.||+|+|||++++.++..+
T Consensus        33 ~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~   70 (331)
T 2r44_A           33 KYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             HHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            34455555555567789999999999999999999866

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.54  E-value=0.001  Score=52.74  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      .++|+|.+|||||||++.|.|.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4789999999999999999885

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.54  E-value=0.0013  Score=49.36  Aligned_cols=27  Identities=26%  Similarity=0.187  Sum_probs=22.0

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+.--++|+|++|+|||||++.+.+.-
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            344568999999999999999998743

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.54  E-value=0.0015  Score=48.55  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35789999999999999999863

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.53  E-value=0.0011  Score=52.17  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=20.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -.++|+|++|||||||++.|.+.
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999873

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.53  E-value=0.0014  Score=48.06  Aligned_cols=21  Identities=29%  Similarity=0.393  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -++|+|++|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            578999999999999999885

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.52  E-value=0.0016  Score=48.64  Aligned_cols=24  Identities=29%  Similarity=0.329  Sum_probs=20.8

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      .--++|+|++|+|||||++.+.+.
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999998874

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.52  E-value=0.0016  Score=48.18  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=20.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999874

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.52  E-value=0.0014  Score=48.72  Aligned_cols=24  Identities=25%  Similarity=0.392  Sum_probs=20.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      --++|+|++|+|||||++.+.+.-
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCC
Confidence            357899999999999999998854

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.51  E-value=0.0016  Score=48.35  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=20.8

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      .--++|+|++|+|||||++.+.+.
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            446899999999999999999863

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.51  E-value=0.0016  Score=48.84  Aligned_cols=22  Identities=41%  Similarity=0.356  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++|+|.+|+|||||++.+.+.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999873

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.51  E-value=0.0013  Score=56.79  Aligned_cols=37  Identities=22%  Similarity=0.226  Sum_probs=30.0

Q ss_pred             cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           17 IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        17 ~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..+++.+ +.+-+|+.++|+|++|+|||||++.|+...
T Consensus       139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~  175 (473)
T 1sky_E          139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI  175 (473)
T ss_dssp             CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred             chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence            3445555 455679999999999999999999998866

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.50  E-value=0.0016  Score=48.40  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46889999999999999999874

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.49  E-value=0.0016  Score=48.70  Aligned_cols=27  Identities=26%  Similarity=0.396  Sum_probs=21.1

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++.--++|+|++|+|||||++.+.+.
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            344567899999999999999999763

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.49  E-value=0.0014  Score=49.54  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=20.6

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      --++|+|++|+|||||++.+.+..
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            467999999999999999987643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.49  E-value=0.0016  Score=48.91  Aligned_cols=25  Identities=28%  Similarity=0.321  Sum_probs=21.0

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      ..--++|+|++|+|||||++.+.+.
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456899999999999999999864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.48  E-value=0.0015  Score=49.11  Aligned_cols=22  Identities=32%  Similarity=0.505  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++|+|++|+|||||++.+.+.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999874

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.48  E-value=0.0013  Score=49.14  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++|+|++|+|||||++.+.+.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.46  E-value=0.0014  Score=51.98  Aligned_cols=22  Identities=23%  Similarity=0.305  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      .++|+|.+|+|||||++.+.|.
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999884

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.46  E-value=0.002  Score=53.28  Aligned_cols=37  Identities=14%  Similarity=0.261  Sum_probs=27.7

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      .+..-+.|.||+|+||||++++|+..+   +...+.++..
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~  151 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISAS  151 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehH
Confidence            456678999999999999999998865   2334445443

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.45  E-value=0.0012  Score=48.65  Aligned_cols=25  Identities=24%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++.--++++|++|+|||||++.+.+
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            4456789999999999999999875

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.43  E-value=0.0031  Score=53.96  Aligned_cols=41  Identities=27%  Similarity=0.409  Sum_probs=29.2

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      ...++.-+.|.||+|+||||++++++..+ ......+.+++.
T Consensus        59 ~~~~~~~iLl~GppGtGKT~la~ala~~l-~~~~~~~~~~~~   99 (456)
T 2c9o_A           59 KKMAGRAVLLAGPPGTGKTALALAIAQEL-GSKVPFCPMVGS   99 (456)
T ss_dssp             TCCTTCEEEEECCTTSSHHHHHHHHHHHH-CTTSCEEEEEGG
T ss_pred             CCCCCCeEEEECCCcCCHHHHHHHHHHHh-CCCceEEEEeHH
Confidence            33455678899999999999999999987 322333444443

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.43  E-value=0.002  Score=53.35  Aligned_cols=27  Identities=33%  Similarity=0.404  Sum_probs=23.0

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .++.-+.|.||+|+||||++++++..+
T Consensus        82 ~~~~~iLL~GppGtGKT~la~ala~~~  108 (355)
T 2qp9_X           82 KPTSGILLYGPPGTGKSYLAKAVATEA  108 (355)
T ss_dssp             CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence            344558899999999999999999876

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.42  E-value=0.002  Score=47.88  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=20.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+-
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhC
Confidence            46789999999999999888763

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.41  E-value=0.0019  Score=47.10  Aligned_cols=23  Identities=26%  Similarity=0.202  Sum_probs=20.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++++|++|+|||||++.+.+-
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45789999999999999998874

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=96.41  E-value=0.002  Score=49.22  Aligned_cols=25  Identities=20%  Similarity=0.185  Sum_probs=22.9

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..+++|.|+.||||||+.+.|+..+
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~l   30 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHY   30 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999999876

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.41  E-value=0.0014  Score=52.36  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=20.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -.++|+|.+|||||||++.|.|.
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            36889999999999999999884

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.40  E-value=0.0017  Score=49.19  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=20.6

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999874

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.40  E-value=0.0014  Score=48.08  Aligned_cols=25  Identities=32%  Similarity=0.590  Sum_probs=21.2

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++.--++|+|++|+|||||++.+.+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4556789999999999999998763

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.39  E-value=0.0015  Score=48.31  Aligned_cols=25  Identities=28%  Similarity=0.499  Sum_probs=21.4

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++.--++|+|++|+|||||++.+.+
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4455789999999999999999885

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.38  E-value=0.002  Score=49.17  Aligned_cols=26  Identities=27%  Similarity=0.222  Sum_probs=22.5

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +--.++|+|.+|+|||||+..++...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34678999999999999999998765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.38  E-value=0.0021  Score=48.59  Aligned_cols=23  Identities=30%  Similarity=0.354  Sum_probs=20.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -.++|+|++|+|||||++.+.+.
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999998874

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.37  E-value=0.00092  Score=50.24  Aligned_cols=22  Identities=45%  Similarity=0.469  Sum_probs=19.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -.++|+|++|+|||||++.+.+
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3679999999999999999864

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.36  E-value=0.002  Score=53.42  Aligned_cols=26  Identities=31%  Similarity=0.505  Sum_probs=22.6

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +...+.|.||+|+||||++++|+..+
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence            34568899999999999999999866

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.35  E-value=0.00093  Score=54.85  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+.|.||+|+||||+++.++..+
T Consensus        40 ~~ll~G~~G~GKT~la~~la~~l   62 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAKGL   62 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999877

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.33  E-value=0.0011  Score=52.68  Aligned_cols=21  Identities=43%  Similarity=0.442  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -++|+|.+|+|||||++.|.+
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~   30 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFL   30 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999998754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.33  E-value=0.0015  Score=49.10  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=19.6

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC-
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            45789999999999999998753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.33  E-value=0.0021  Score=48.29  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++|+|++|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5789999999999999999873

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.32  E-value=0.0014  Score=48.20  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=20.6

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      .--++++|++|+|||||++.+.+.
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            346789999999999999998763

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.31  E-value=0.0018  Score=52.19  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=21.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -.++|+|++|||||||++.|.|.
T Consensus        25 ~~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           25 PQIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CeEEEEcCCCCCHHHHHHHHHCC
Confidence            46899999999999999999884

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.30  E-value=0.0064  Score=46.12  Aligned_cols=37  Identities=22%  Similarity=0.113  Sum_probs=26.5

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL   64 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~   64 (190)
                      .+|.++.++|+.||||||.+--++..+...+.-...+
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~   42 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF   42 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence            5689999999999999988776665553334333333

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.30  E-value=0.0018  Score=48.99  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g   52 (190)
                      --++|+|++|+|||||++.+.+
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHhc
Confidence            3578999999999999998876

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.30  E-value=0.002  Score=53.12  Aligned_cols=29  Identities=24%  Similarity=0.306  Sum_probs=24.8

Q ss_pred             cccCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613           25 LLNQKGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -.+.+|.++.|.||+|+|||||+..++..
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            34667888899999999999999998764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.30  E-value=0.0013  Score=48.28  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=9.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEECCCCC------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35789999999999999998764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.29  E-value=0.0023  Score=47.48  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++++|++|+|||||++.+.+.
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6789999999999999999874

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.29  E-value=0.0013  Score=48.97  Aligned_cols=22  Identities=32%  Similarity=0.444  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++|+|++|+|||||++.+.+.
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.29  E-value=0.00084  Score=51.07  Aligned_cols=24  Identities=25%  Similarity=0.198  Sum_probs=21.1

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      .-.++|+|++|+|||||++.|.+.
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            457899999999999999998874

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.28  E-value=0.0023  Score=51.99  Aligned_cols=24  Identities=33%  Similarity=0.462  Sum_probs=21.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..+.|.||+|+||||+++.++..+
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHh
Confidence            468899999999999999998765

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.27  E-value=0.0017  Score=49.93  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      .-.++|+|++|+|||||++.+.+.
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999998763

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.25  E-value=0.002  Score=48.11  Aligned_cols=26  Identities=23%  Similarity=0.372  Sum_probs=20.3

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      .+.--++|+|++|+|||||++.+.+.
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            34456899999999999999998753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.24  E-value=0.0016  Score=48.40  Aligned_cols=25  Identities=32%  Similarity=0.388  Sum_probs=21.0

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      +.-.++|+|++|+|||||++.+.+.
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3456889999999999999998763

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.24  E-value=0.0039  Score=53.91  Aligned_cols=50  Identities=20%  Similarity=0.092  Sum_probs=36.4

Q ss_pred             ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhC-CCcEEEEcCc
Q 029613           18 GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSR-GKLSYILDGD   67 (190)
Q Consensus        18 ~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~-~~g~i~~~g~   67 (190)
                      +.|+.+.--+.+|+++.|.|++|+|||||+..++-..... +...+++..+
T Consensus       230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E  280 (503)
T 1q57_A          230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE  280 (503)
T ss_dssp             TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred             hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence            4455554458999999999999999999998887665333 4445566543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.21  E-value=0.0012  Score=49.01  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=21.3

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .--++|+|++|+|||||++.+.+.-
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999988753

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.20  E-value=0.0012  Score=47.47  Aligned_cols=26  Identities=31%  Similarity=0.382  Sum_probs=21.5

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      ..+.-+.|.|++|+|||++++.|...
T Consensus        25 ~~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           25 KRTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHh
Confidence            44556889999999999999988653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.20  E-value=0.0027  Score=47.74  Aligned_cols=23  Identities=13%  Similarity=0.186  Sum_probs=20.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhhC
Confidence            45799999999999999998763

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.20  E-value=0.002  Score=49.01  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=19.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+-
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            35889999999999999999763

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.20  E-value=0.0074  Score=55.37  Aligned_cols=38  Identities=24%  Similarity=0.418  Sum_probs=28.3

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG   66 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g   66 (190)
                      .+.+..-+.|.||+|+|||+|+|++++.+   +...+.+++
T Consensus       234 g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~  271 (806)
T 3cf2_A          234 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLING  271 (806)
T ss_dssp             CCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEH
T ss_pred             CCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEh
Confidence            34555668899999999999999999854   334455554

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.18  E-value=0.0021  Score=48.09  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=20.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|.+|+|||||++.+.+.
T Consensus        21 ~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           21 PRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            46889999999999999988774

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.17  E-value=0.002  Score=51.39  Aligned_cols=23  Identities=17%  Similarity=0.150  Sum_probs=20.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -.++|+|.+|+|||||++.|.|.
T Consensus        27 ~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B           27 PQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CeEEEEeCCCCCHHHHHHHHHCC
Confidence            46899999999999999999884

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.0032  Score=48.07  Aligned_cols=23  Identities=35%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|+|||||++.+.+.
T Consensus        14 ~ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           14 FKIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35789999999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d1m7ga_	208	c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (A	5e-48
d1x6va3	195	c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin	2e-25
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	1e-20
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	2e-18
d1m8pa3	183	c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d	2e-18
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	8e-18
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	8e-17
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	8e-16
d1g8fa3	122	c.37.1.15 (A:390-511) ATP sulfurylase C-terminal d	1e-14
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	1e-11
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	1e-07
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	1e-05
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	6e-05
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	1e-04
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	2e-04
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	2e-04
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	8e-04
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	0.002
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	0.002
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	0.002
d1a7ja_	288	c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph	0.002
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.003
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	0.004
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	0.004
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	0.004

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score =  153 bits (388), Expect = 5e-48
 Identities = 89/167 (53%), Positives = 111/167 (66%), Gaps = 9/167 (5%)

Query: 7   STNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILD 65
           STNI +  S + R ER +L NQ+G  +W+TGLS SGKSTLA  +  +L   R   +Y LD
Sbjct: 1   STNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 60

Query: 66  GDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLP 125
           GDN+R GLNK+LGFS  DR ENIRR+ EVAKLFAD+  I I S ISPYRKDRD  R +  
Sbjct: 61  GDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHE 120

Query: 126 DS--------NFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSI 164
            +         F+EV++++P+E+ E RDPKGLYK AR G IK    I
Sbjct: 121 VATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGI 167

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.5 bits (236), Expect = 2e-25
 Identities = 76/163 (46%), Positives = 103/163 (63%), Gaps = 7/163 (4%)

Query: 17  IGRLERQKLLNQ----KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG 72
           + R +R +++      +GC VW+TGLSG+GK+T++ ++ + L   G   Y LDGDN+R G
Sbjct: 2   VSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG 61

Query: 73  LNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEV 132
           LNKNLGFS EDR EN+RR+ EVAKLFADAGL+CI S ISPY +DR+  R +   ++    
Sbjct: 62  LNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFF 121

Query: 133 FMNMPLELCEARDP--KGLYKLARAGKIKGLLSIFS-FCYYEK 172
            + +   L        KGLYK ARAG+IKG   I S +   E 
Sbjct: 122 EVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEA 164

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 82.3 bits (202), Expect = 1e-20
 Identities = 17/135 (12%), Positives = 42/135 (31%)

Query: 32  VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRV 91
           ++     SG+GK+TL   +   L +RG    ++   +    ++K    S E R     + 
Sbjct: 4   LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63

Query: 92  GEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYK 151
              ++                 +           D   +E F +  +           ++
Sbjct: 64  IVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHR 123

Query: 152 LARAGKIKGLLSIFS 166
                  + ++++ S
Sbjct: 124 PEELVIDRHVIAVAS 138

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 76.5 bits (187), Expect = 2e-18
 Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 9/146 (6%)

Query: 27  NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNK-----NLGFSA 81
           +  G ++ ++G  GSGKST+A ++       G        D+L   +        L  S 
Sbjct: 1   DLGGNILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDLWGYIKHGRIDPWLPQSH 57

Query: 82  EDRTENIRRVGEVAKLFADAGLICI-ASLISPYRKDRDACRAMLPDSNFIEVFMNMPLEL 140
           +     ++   +VA  +A  G   I   ++ P         A       +       +E 
Sbjct: 58  QQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIER 117

Query: 141 CEARDPKGLYKLARAGKIKGLLSIFS 166
           C  R    L        +    +   
Sbjct: 118 CLDRGGDSLSDPLVVADLHSQFADLG 143

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 76.7 bits (187), Expect = 2e-18
 Identities = 53/146 (36%), Positives = 76/146 (52%), Gaps = 2/146 (1%)

Query: 27  NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI-LDGDNLRHGLNKNLGFSAEDRT 85
             +G  +++TG   SGK  +A ++   L  +G  S   L GD +RH L+  LGF+ EDR 
Sbjct: 3   ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRH 62

Query: 86  ENIRRVGEVAKLFADAGLICIASLISPYRKDRDACR-AMLPDSNFIEVFMNMPLELCEAR 144
            NI+R+  VA     AG   IA+ I+PY + R   R A+    +F  V +  PLE CE  
Sbjct: 63  TNIQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQS 122

Query: 145 DPKGLYKLARAGKIKGLLSIFSFCYY 170
           D +G+Y  AR G+IKG   +      
Sbjct: 123 DKRGIYAAARRGEIKGFTGVDDPYET 148

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 75.1 bits (183), Expect = 8e-18
 Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 18/142 (12%)

Query: 32  VVWITGLSGSGKSTLAFSVNKELYSRGKL----------SYILDGDNLRHGLNKNLGFSA 81
           ++ + G S +GKS +   +   L                   +         + + G S 
Sbjct: 5   MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSI 64

Query: 82  EDRTENIRRV-GEVAKLFADAGLICI-ASLISPYRKDRDACRAMLPDSNFIEVFMNMPLE 139
                 +     E     A AG   I   +       ++  R+ + D + + V +     
Sbjct: 65  GPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGA 124

Query: 140 LCEARDPKGLYKLARAGKIKGL 161
           + E R+       AR  ++ G+
Sbjct: 125 VAEGRE------TARGDRVAGM 140

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 72.0 bits (175), Expect = 8e-17
 Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 2/118 (1%)

Query: 27  NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTE 86
           N    +  + G+SGSGKS +A  V  +L++       L        +      + +DR  
Sbjct: 3   NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKP 62

Query: 87  NIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEAR 144
            ++ + + A        + +    +  +  RD  R   P  N   +++    ++ E+R
Sbjct: 63  WLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNP--NLSFIYLKGDFDVIESR 118

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.4 bits (171), Expect = 8e-16
 Identities = 15/124 (12%), Positives = 37/124 (29%), Gaps = 12/124 (9%)

Query: 31  CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRR 90
            ++ + GL   GK+ ++  + + L   G  +   +    R  + K          +N   
Sbjct: 3   TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEG 62

Query: 91  VGEVAK------------LFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPL 138
           +    +            L  + G + +    +  R+ R         + +   F+    
Sbjct: 63  LKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESIC 122

Query: 139 ELCE 142
              E
Sbjct: 123 VDPE 126

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.7 bits (158), Expect = 1e-14
 Identities = 10/138 (7%), Positives = 33/138 (23%), Gaps = 46/138 (33%)

Query: 27  NQKGCVVWITGLSGSGKSTLAFSVNKEL--YSRGKLSYILDGDNLRHGLNKNLGFSAEDR 84
            ++G  + +       +  L+ ++      +  G+   I + +                 
Sbjct: 3   PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN----------------- 45

Query: 85  TENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEAR 144
             N   +  + + F  +G                         + + +      +     
Sbjct: 46  --NKTELLSLIQDFIGSG-------------------------SGLIIPDQWEDDKDSVV 78

Query: 145 DPKGLYKLARAGKIKGLL 162
             + +Y L  +      L
Sbjct: 79  GKQNVYLLDTSSSADIQL 96

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 58.5 bits (140), Expect = 1e-11
 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 10/122 (8%)

Query: 32  VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTE---NI 88
           +  ITG +G GKST      K L ++   S  ++GD + H +        E         
Sbjct: 4   LYIITGPAGVGKSTTC----KRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTW 59

Query: 89  RRVGEVAKLFADAGLICIAS---LISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARD 145
           + + ++   F  A    +                 +A + D     + +    E    RD
Sbjct: 60  KNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRD 119

Query: 146 PK 147
             
Sbjct: 120 AL 121

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 47.0 bits (110), Expect = 1e-07
 Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 14/126 (11%)

Query: 32  VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGF--------SAED 83
           ++   G  GSGKST A    +E  ++    Y ++ D+ R  +  +               
Sbjct: 4   IILTIGCPGSGKSTWA----REFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGI 59

Query: 84  RTENIRRVGEVAKLFADAGLICIASLISPYRKDRDA--CRAMLPDSNFIEVFMNMPLELC 141
            T       +      D+    I S  +   + R A    A            ++P    
Sbjct: 60  VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL 119

Query: 142 EARDPK 147
             R+ K
Sbjct: 120 VKRNSK 125

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 41.3 bits (95), Expect = 1e-05
 Identities = 19/143 (13%), Positives = 44/143 (30%), Gaps = 7/143 (4%)

Query: 33  VWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVG 92
           +++ G  G+GKST+     ++L  +  + +      +      ++G+  +   E   R  
Sbjct: 5   IFLVGPMGAGKSTIG----RQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDR 60

Query: 93  EVAKLFADAGLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKL 152
           E   +        I              R  L     + V++   +E   AR  +   + 
Sbjct: 61  EEKVINELTEKQGIVLATGGGSVKSRETRNRLSA-RGVVVYLETTIEKQLARTQRDKKRP 119

Query: 153 ARAGKIKGLLSIFSFCYYEKLIP 175
               +      +       +  P
Sbjct: 120 LLHVETPPREVL--EALANERNP 140

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 40.2 bits (94), Expect = 6e-05
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 28  QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTEN 87
           + G V+ I G SGSGKST    +N  L    + + I++G N+    +K+      D+ + 
Sbjct: 26  RAGDVISIIGSSGSGKSTFLRCINF-LEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQL 84

Query: 88  IRRVGEVAKLFADAGLI 104
                 +  +F    L 
Sbjct: 85  RLLRTRLTMVFQHFNLW 101

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 28  QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTEN 87
           ++G V+ I G SGSGKSTL   + +  Y       ++DG +L                  
Sbjct: 27  KQGEVIGIVGRSGSGKSTLTKLIQR-FYIPENGQVLIDGHDLAL-------ADPNWLRRQ 78

Query: 88  IRRVGEVAKLFADAGLICIA 107
           +  V +   L   + +  I+
Sbjct: 79  VGVVLQDNVLLNRSIIDNIS 98

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 4/98 (4%)

Query: 29  KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENI 88
           KG  + ITG  G+GK+++A    + + +       L+   L    +    +  E  T  I
Sbjct: 4   KGINILITGTPGTGKTSMA----EMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHII 59

Query: 89  RRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPD 126
               E   L     ++             +        
Sbjct: 60  EEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFH 97

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 28  QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTEN 87
           + G V  + G +GSGKST+A  +   LY       +LDG  L         +        
Sbjct: 38  RPGEVTALVGPNGSGKSTVAALLQN-LYQPTGGQLLLDGKPLPQ-------YEHRYLHRQ 89

Query: 88  IRRVGEVAKLFAD 100
           +  VG+  ++F  
Sbjct: 90  VAAVGQEPQVFGR 102

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (83), Expect = 8e-04
 Identities = 18/128 (14%), Positives = 25/128 (19%), Gaps = 25/128 (19%)

Query: 21  ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL-YSRGKLSYILDGDNLRHGLNKNLGF 79
           E   LL+    VV   G  G+GKST          Y       +             L  
Sbjct: 5   ESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAAL-- 62

Query: 80  SAEDRTENIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAMLPD--SNFIEVFMNMP 137
                                 G   +    +P    R        D             
Sbjct: 63  --------------------RQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT 102

Query: 138 LELCEARD 145
           +E     +
Sbjct: 103 IEQARHNN 110

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNL 77
            G  V + G SGSGKST+A  + +  Y   +   ++DG +LR     +L
Sbjct: 39 PAGKTVALVGRSGSGKSTIASLITR-FYDIDEGHILMDGHDLREYTLASL 87

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 8/81 (9%)

Query: 28  QKGCVVWITGLSGSGKSTLAFSVNKEL-------YSRGKLSYILDGDNLRHG-LNKNLGF 79
           +KG ++ ITG +GSGK++L   +  EL          G++S+      +  G + +N+ F
Sbjct: 60  EKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIF 119

Query: 80  SAEDRTENIRRVGEVAKLFAD 100
                    + V +  +L  D
Sbjct: 120 GVSYDEYRYKSVVKACQLQQD 140

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 32  VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD-GDNLRHGLNKNLGFSAEDRTENIRR 90
           +  +TG+ G GKST+   V + L ++G  + I++ GD +     K       D  E  + 
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRD--EMRKL 60

Query: 91  VGEVAKLFADAGLICIASLISPYRKD 116
             E  K         IA       + 
Sbjct: 61  SVEKQKKLQIDAAKGIAEEARAGGEG 86

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 11/59 (18%), Positives = 25/59 (42%)

Query: 32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRR 90
          ++ +TG SG+G ST+  + ++     G  +  ++GD        ++    + R      
Sbjct: 6  IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDA 64

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 34.8 bits (79), Expect = 0.003
 Identities = 17/134 (12%), Positives = 33/134 (24%), Gaps = 5/134 (3%)

Query: 32  VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRV 91
           V  + G   SGK+TL           G     +          +       D   + R  
Sbjct: 3   VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH---GHGGEPARPEGVDSVRHERAG 59

Query: 92  GEVAKLFADAGLICIASLISPY-RKDRDACRAMLPDSNFIEVFMNMPL-ELCEARDPKGL 149
                +  D  L                    +  D   +E +      ++   R  +  
Sbjct: 60  AVATAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQERHPKVVLVRSEEDW 119

Query: 150 YKLARAGKIKGLLS 163
             L     I+ +++
Sbjct: 120 ASLQHLANIRAVIA 133

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 34.8 bits (80), Expect = 0.004
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH 71
          +KG  V   G+SG GKSTL   + +  Y       ++DG N++ 
Sbjct: 42 EKGETVAFVGMSGGGKSTLINLIPR-FYDVTSGQILIDGHNIKD 84

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 12/119 (10%)

Query: 32  VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRV 91
            V++TG  G GK+TL    ++ L S G        + +R G  + +GF     +     +
Sbjct: 3   HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQG-GRRIGFDVVTLSGTRGPL 61

Query: 92  GEVAKLFADAGLIC-----------IASLISPYRKDRDACRAMLPDSNFIEVFMNMPLE 139
             V          C              L  P  ++ D           I+    M L 
Sbjct: 62  SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELF 120

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 34.8 bits (80), Expect = 0.004
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 28  QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTEN 87
           Q   ++   G SG GKST+   + +  Y        +DG  + +        S E+    
Sbjct: 26  QPNSIIAFAGPSGGGKSTIFSLLER-FYQPTAGEITIDGQPIDN-------ISLENWRSQ 77

Query: 88  IRRVGEVAKLFADAGLICIASLISPYRKDRDACRA 122
           I  V + + + A      +   +     D D  + 
Sbjct: 78  IGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQV 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.98
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.98
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.97
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.97
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.97
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.96
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.95
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.91
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.5
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.47
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.45
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.22
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.14
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.01
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.97
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	98.71
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.65
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.61
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.6
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.56
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.32
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.23
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.19
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.15
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.09
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.07
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.04
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.03
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.02
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.02
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.01
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.0
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.99
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.97
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.97
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.92
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.9
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.88
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.87
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.85
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.84
d1okkd2	207	GTPase domain of the signal recognition particle r	97.84
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.82
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.82
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.8
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.79
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.78
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.77
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.73
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.72
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.71
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.71
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.7
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.7
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.69
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.68
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.67
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.65
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.64
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.62
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.61
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.59
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.51
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.5
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.48
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.48
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.48
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.47
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.46
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.46
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.45
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.45
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.44
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.43
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.43
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.4
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.39
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.38
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.38
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.35
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.35
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.32
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.32
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.31
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.31
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.29
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.29
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.29
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.28
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.24
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.23
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.23
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.22
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.22
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.22
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.22
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.21
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.21
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.19
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.19
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.18
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.18
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.17
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.16
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.15
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.14
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.14
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.13
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.13
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.1
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.06
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.05
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.05
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.05
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.04
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.03
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.03
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.99
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.92
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.9
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.9
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.89
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.89
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.88
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.88
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.87
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.86
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.86
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.86
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.86
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.85
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.85
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.84
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.83
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.82
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.79
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.78
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.76
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.75
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.74
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.72
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.65
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.6
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.52
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.49
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.49
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.46
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.45
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.42
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.41
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.41
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.37
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.37
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.35
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.34
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.32
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.32
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.32
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.32
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.31
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.3
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.29
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.29
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.27
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.27
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.25
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.24
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.24
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	96.23
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.22
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.21
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.18
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.17
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.12
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.12
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.12
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.11
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.08
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.07
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.06
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.03
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.02
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.01
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.01
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.99
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.99
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.97
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.96
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.95
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.94
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.89
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.88
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.88
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.85
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.84
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	95.84
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.83
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.82
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.82
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.79
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.78
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.75
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.7
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.64
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.64
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.62
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.62
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.51
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.48
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	95.4
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.37
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.29
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.19
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.14
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	95.14
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.13
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.02
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.99
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.98
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.93
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.9
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.78
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.76
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.74
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.74
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.5
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.43
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.4
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	94.29
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	94.25
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.23
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.21
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.21
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	94.18
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	94.15
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.11
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	94.05
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.03
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.02
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	93.88
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	93.79
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.73
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	93.58
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	93.57
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	93.48
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	93.47
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	93.29
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	93.14
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.64
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	92.37
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	92.36
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	91.98
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	91.97
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	91.95
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	91.92
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	91.63
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	91.56
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	91.56
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.3
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	91.19
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	91.1
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	91.05
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	90.35
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	89.45
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	88.7
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	86.37
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	84.92
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	83.99
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	83.28
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	82.06
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	80.24
d1khba1	363	Cytosolic phosphoenolpyruvate carboxykinase (GTP-h	80.06

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.3e-37  Score=245.96  Aligned_cols=150  Identities=15%  Similarity=0.108  Sum_probs=121.6

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCCh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSA   81 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~   81 (190)
                      .|+++|++|+|++..+|+++||++++||+++|+||||||||||+|+|+|++ +|.+|.|+++|.++..  ..+..++|.+
T Consensus         6 ~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~-~p~sG~I~i~g~~i~~~~~~~r~ig~v~   84 (239)
T d1v43a3           6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE-EPTEGRIYFGDRDVTYLPPKDRNISMVF   84 (239)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred             eEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCCEEEEcceecccCCcccceEEEEe
Confidence            479999999999999999999999999999999999999999999999977 8899999999988753  2233456655


Q ss_pred             hhH--------HHHHH------------HHHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613           82 EDR--------TENIR------------RVGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNM  136 (190)
Q Consensus        82 ~~~--------~~~~~------------~~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDE  136 (190)
                      |+.        .+++.            .-..+..++...++..    .+..|||||||| ++|||++.+|+++  +|||
T Consensus        85 Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iL--llDE  162 (239)
T d1v43a3          85 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVL--LMDE  162 (239)
T ss_dssp             C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEE--EEES
T ss_pred             echhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCce--eecC
Confidence            541        12211            0122344555566643    378899999999 6999999999999  9999


Q ss_pred             CchhhhhcChHHHHHHHHcC
Q 029613          137 PLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       137 P~~~ld~~~~~~~~~~~~~~  156 (190)
                      ||++||+..+..+++.+++.
T Consensus       163 Pts~LD~~~~~~i~~ll~~l  182 (239)
T d1v43a3         163 PLSNLDAKLRVAMRAEIKKL  182 (239)
T ss_dssp             TTTTSCHHHHHHHHHHHHHH
T ss_pred             CcccCCHHHHHHHHHHHHHH
Confidence            99999999999998888763

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=2.2e-37  Score=244.95  Aligned_cols=152  Identities=15%  Similarity=0.128  Sum_probs=121.6

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc--------
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG--------   72 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~--------   72 (190)
                      |+ .|+++|++|+|++..+++|+||++++||+++|+||||||||||+|+|+|++ +|++|+|+++|.++...        
T Consensus         1 M~-~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~-~p~sG~I~~~g~~i~~~~~~~~~~~   78 (240)
T d1g2912           1 MA-GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE-EPSRGQIYIGDKLVADPEKGIFVPP   78 (240)
T ss_dssp             CE-EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEEEEEGGGTEECCG
T ss_pred             CC-cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCC-CCCCCEEEECCEEecccchhhhccc
Confidence            54 689999999999999999999999999999999999999999999999977 88999999999876421        


Q ss_pred             cccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCC
Q 029613           73 LNKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        73 ~~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~  127 (190)
                      .+..++|.+|+        ..+++..            -..+.+++...++.    ..+..|||||+|| +||||++.+|
T Consensus        79 ~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P  158 (240)
T d1g2912          79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKP  158 (240)
T ss_dssp             GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             ccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            12335554443        1222211            01233444444443    3488899999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +++  +|||||++||+..+..+++.+++.
T Consensus       159 ~iL--llDEPt~~LD~~~~~~i~~~l~~l  185 (240)
T d1g2912         159 QVF--LMDEPLSNLDAKLRVRMRAELKKL  185 (240)
T ss_dssp             SEE--EEECTTTTSCHHHHHHHHHHHHHH
T ss_pred             CEE--EecCCCcccCHHHHHHHHHHHHHH
Confidence            999  999999999999999999988764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-37  Score=244.08  Aligned_cols=149  Identities=15%  Similarity=0.108  Sum_probs=105.7

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCChh
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSAE   82 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~~   82 (190)
                      |+++|++|+|++..+++|+||++++||+++|+||||||||||+|+|+|++ ++.+|+|.++|.++..  ..+..++|.+|
T Consensus         1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~-~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q   79 (232)
T d2awna2           1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-TITSGDLFIGEKRMNDTPPAERGVGMVFQ   79 (232)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEESSSCCTTSCGGGTCEEEECS
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC-CCCCCEEEECCEECCCCchhhceeeeecc
Confidence            57899999999999999999999999999999999999999999999977 8899999999988753  22334555554


Q ss_pred             h--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCC
Q 029613           83 D--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMP  137 (190)
Q Consensus        83 ~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP  137 (190)
                      +        ..+++..            -..+..+++..++..    .+..|||||+|| +||||++.+|+++  +||||
T Consensus        80 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~il--llDEP  157 (232)
T d2awna2          80 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF--LLDEP  157 (232)
T ss_dssp             SCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEE--EEEST
T ss_pred             ccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE--EEcCC
Confidence            3        1111110            012344455555543    488899999999 5999999999999  99999


Q ss_pred             chhhhhcChHHHHHHHHcC
Q 029613          138 LELCEARDPKGLYKLARAG  156 (190)
Q Consensus       138 ~~~ld~~~~~~~~~~~~~~  156 (190)
                      |++||+..+..+++.+++.
T Consensus       158 ts~LD~~~~~~i~~~l~~l  176 (232)
T d2awna2         158 LSNLDAALRVQMRIEISRL  176 (232)
T ss_dssp             TTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999988888763

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=7.9e-37  Score=240.06  Aligned_cols=149  Identities=15%  Similarity=0.164  Sum_probs=120.0

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCCh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSA   81 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~   81 (190)
                      ||+++|++|+|++ .+|+|+||++++||+++|+||||||||||+|+|+|++ +|.+|+|.++|.++..  ..+..++|.+
T Consensus         1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~-~p~sG~I~~~G~~i~~~~~~~r~ig~v~   78 (229)
T d3d31a2           1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH-VPDSGRILLDGKDVTDLSPEKHDIAFVY   78 (229)
T ss_dssp             CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS-CCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred             CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCc-CCCCCEEEEccEeccccchhHhcceeec
Confidence            5899999999986 5899999999999999999999999999999999977 8899999999998753  1223455544


Q ss_pred             hh--------HHHHHHHH---------HHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCch
Q 029613           82 ED--------RTENIRRV---------GEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLE  139 (190)
Q Consensus        82 ~~--------~~~~~~~~---------~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~  139 (190)
                      |+        ..+++...         .++.+++...++..    .+..|||||+|| ++|||++.+|+++  +|||||+
T Consensus        79 Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iL--llDEPts  156 (229)
T d3d31a2          79 QNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKIL--LLDEPLS  156 (229)
T ss_dssp             TTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEE--EEESSST
T ss_pred             cccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCce--eecCCCc
Confidence            43        23333221         12344455555543    478899999999 6999999999999  9999999


Q ss_pred             hhhhcChHHHHHHHHcC
Q 029613          140 LCEARDPKGLYKLARAG  156 (190)
Q Consensus       140 ~ld~~~~~~~~~~~~~~  156 (190)
                      +||+..+..+++.+++.
T Consensus       157 ~LD~~~~~~i~~~l~~l  173 (229)
T d3d31a2         157 ALDPRTQENAREMLSVL  173 (229)
T ss_dssp             TSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999998888763

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=4.1e-37  Score=244.10  Aligned_cols=157  Identities=17%  Similarity=0.208  Sum_probs=120.5

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccccc
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNL   77 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i   77 (190)
                      .||+++|++|+|++..+|+|+||++++||+++|+||||||||||+++|+|++ +|.+|+|.++|.++...     .+..+
T Consensus         5 ~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~-~p~~G~I~~~G~~i~~~~~~~~~r~gi   83 (240)
T d1ji0a_           5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV-RAQKGKIIFNGQDITNKPAHVINRMGI   83 (240)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred             eEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEecccccccccHHHHHHhcc
Confidence            3899999999999999999999999999999999999999999999999987 88999999999886431     11112


Q ss_pred             CCChhh--------HHHHH--------------HHHHHHHHHHHH--cCcceeecccCccHHHH-HHHHHhCCCCCeEEE
Q 029613           78 GFSAED--------RTENI--------------RRVGEVAKLFAD--AGLICIASLISPYRKDR-DACRAMLPDSNFIEV  132 (190)
Q Consensus        78 ~~~~~~--------~~~~~--------------~~~~~~~~~~~~--~~~~~~~~~lS~g~kqr-~iarall~~~~il~v  132 (190)
                      +|.+++        ..+++              +.+..+...+..  ......+..|||||+|| .+|||++.+|+++  
T Consensus        84 ~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lL--  161 (240)
T d1ji0a_          84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLL--  161 (240)
T ss_dssp             EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEE--
T ss_pred             cccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEe--
Confidence            333322        12221              111222222111  12234578899999999 6999999999999  


Q ss_pred             EeeCCchhhhhcChHHHHHHHHcCCCCCcc
Q 029613          133 FMNMPLELCEARDPKGLYKLARAGKIKGLL  162 (190)
Q Consensus       133 llDEP~~~ld~~~~~~~~~~~~~~~~~~~~  162 (190)
                      +|||||++||+..+..+++.+++.+.+|.+
T Consensus       162 llDEPt~gLD~~~~~~i~~~i~~l~~~g~t  191 (240)
T d1ji0a_         162 MMDEPSLGLAPILVSEVFEVIQKINQEGTT  191 (240)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             eecCCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence            999999999999999999999875544533

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1.3e-36  Score=240.54  Aligned_cols=152  Identities=17%  Similarity=0.160  Sum_probs=121.8

Q ss_pred             CCcccccCcceecc--CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc------
Q 029613            1 MATVGNSTNIFWQE--SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG------   72 (190)
Q Consensus         1 m~~~l~~~~l~~~~--~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~------   72 (190)
                      |. .|+++|++|+|  +...+|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|+++|.++...      
T Consensus         1 M~-~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~-~p~~G~I~~~g~~i~~~~~~~~~   78 (242)
T d1oxxk2           1 MV-RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD-VPSTGELYFDDRLVASNGKLIVP   78 (242)
T ss_dssp             CC-CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS-CCSEEEEEETTEEEEETTEESSC
T ss_pred             CC-EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCc-CCCCceEEECCEEeecCchhhcc
Confidence            54 57899999999  5578999999999999999999999999999999999977 88999999999887431      


Q ss_pred             -cccccCCChhh--------HHHHHH------------HHHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCC
Q 029613           73 -LNKNLGFSAED--------RTENIR------------RVGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        73 -~~~~i~~~~~~--------~~~~~~------------~~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~  126 (190)
                       .+..++|.+|+        ..+++.            .-..+.++++..++..    .+..|||||+|| ++|||++.+
T Consensus        79 ~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~  158 (242)
T d1oxxk2          79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKD  158 (242)
T ss_dssp             GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             hhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhc
Confidence             23345554443        222221            0122445556666643    488899999999 699999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+++  ++||||++||+..+..+.+.+++.
T Consensus       159 P~ll--llDEPt~~LD~~~~~~i~~~i~~l  186 (242)
T d1oxxk2         159 PSLL--LLDEPFSNLDARMRDSARALVKEV  186 (242)
T ss_dssp             CSEE--EEESTTTTSCGGGHHHHHHHHHHH
T ss_pred             ccce--eecCCccCCCHHHHHHHHHHHHHH
Confidence            9999  999999999999999999888763

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=9.4e-37  Score=243.96  Aligned_cols=157  Identities=20%  Similarity=0.206  Sum_probs=123.6

Q ss_pred             CCcccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----ccc
Q 029613            1 MATVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNK   75 (190)
Q Consensus         1 m~~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~   75 (190)
                      |+ ||+++|++|+|++.++|+|+||++++||+++|+||||||||||+++|+|++ ++++|+|.++|.++...     .+.
T Consensus         2 M~-iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~   79 (254)
T d1g6ha_           2 ME-ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL-KADEGRVYFENKDITNKEPAELYHY   79 (254)
T ss_dssp             CE-EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             cc-eEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCC-cCCCcEEEECCEeccchhHHHHHHh
Confidence            54 899999999999999999999999999999999999999999999999987 88999999999887431     111


Q ss_pred             ccCCChhh--------HHHHHH-------------------------HHHHHHHHHHHcCcc----eeecccCccHHHH-
Q 029613           76 NLGFSAED--------RTENIR-------------------------RVGEVAKLFADAGLI----CIASLISPYRKDR-  117 (190)
Q Consensus        76 ~i~~~~~~--------~~~~~~-------------------------~~~~~~~~~~~~~~~----~~~~~lS~g~kqr-  117 (190)
                      .+++.+|+        ..+++.                         .......++...++.    ..+..||+|++|| 
T Consensus        80 gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv  159 (254)
T d1g6ha_          80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLV  159 (254)
T ss_dssp             TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred             cCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHH
Confidence            23443332        122221                         112233344444443    2478899999999 


Q ss_pred             HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCc
Q 029613          118 DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGL  161 (190)
Q Consensus       118 ~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~  161 (190)
                      ++||+++.+|+++  +|||||++||+..+..+++.+++.+-+|.
T Consensus       160 ~iAraL~~~P~ll--ilDEPt~gLD~~~~~~i~~~i~~l~~~g~  201 (254)
T d1g6ha_         160 EIGRALMTNPKMI--VMDEPIAGVAPGLAHDIFNHVLELKAKGI  201 (254)
T ss_dssp             HHHHHHHTCCSEE--EEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCcCch--hhcCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence            6999999999999  99999999999999999999987544443

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.3e-37  Score=241.93  Aligned_cols=149  Identities=22%  Similarity=0.236  Sum_probs=119.7

Q ss_pred             ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc-------c
Q 029613            4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH-------G   72 (190)
Q Consensus         4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~-------~   72 (190)
                      ||+++|++|+|+.    ..|++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++..       .
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~-~p~sG~I~~~g~~i~~~~~~~~~~   79 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTEGSVLVDGQELTTLSESELTK   79 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSS-CCSEEEEEETTEEECTTCHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCc-cccCCceEEcCeEeeeCChhhhhh
Confidence            5899999999964    36899999999999999999999999999999999977 8899999999998743       1


Q ss_pred             cccccCCChhh--------HHHHHHH------------HHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCC
Q 029613           73 LNKNLGFSAED--------RTENIRR------------VGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDS  127 (190)
Q Consensus        73 ~~~~i~~~~~~--------~~~~~~~------------~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~  127 (190)
                      ++..++|.+|+        ..+++..            -..+.+++...++..    .+..|||||+|| +||||++.+|
T Consensus        80 ~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P  159 (240)
T d3dhwc1          80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP  159 (240)
T ss_dssp             HHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCC
T ss_pred             hhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCC
Confidence            22345555543        2233221            122345555555543    488899999999 6999999999


Q ss_pred             CeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          128 NFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       128 ~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      +++  ++||||++||+..+..+.+.+++
T Consensus       160 ~lL--llDEPt~~LD~~~~~~i~~~l~~  185 (240)
T d3dhwc1         160 KVL--LCDEATSALDPATTRSILELLKD  185 (240)
T ss_dssp             SEE--EEESGGGSSCHHHHHHHHHHHHH
T ss_pred             CeE--EeccccccCCHHHhhHHHHHHHH
Confidence            999  99999999999999999988876

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=3.4e-36  Score=236.83  Aligned_cols=150  Identities=20%  Similarity=0.185  Sum_probs=119.2

Q ss_pred             ccccCcceeccCc----cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------
Q 029613            4 VGNSTNIFWQESP----IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-------   72 (190)
Q Consensus         4 ~l~~~~l~~~~~~----~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-------   72 (190)
                      ||+++|++|+|+.    ..+++|+||++++||+++|+||||||||||+++|+|++ +|++|+|+++|.++...       
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~-~p~sG~I~~~g~~i~~~~~~~~~~   79 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD-KPTEGEVYIDNIKTNDLDDDELTK   79 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCC-CCCcceeEECCEEcCcCChhhcch
Confidence            5899999999964    34899999999999999999999999999999999977 88999999999887431       


Q ss_pred             c-ccccCCChhh--------HHHHHH---------------HHHHHHHHHHHcCcc-----eeecccCccHHHH-HHHHH
Q 029613           73 L-NKNLGFSAED--------RTENIR---------------RVGEVAKLFADAGLI-----CIASLISPYRKDR-DACRA  122 (190)
Q Consensus        73 ~-~~~i~~~~~~--------~~~~~~---------------~~~~~~~~~~~~~~~-----~~~~~lS~g~kqr-~iara  122 (190)
                      . +..++|.+|+        ..+++.               +...+..++...++.     .++..|||||+|| +||||
T Consensus        80 ~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAra  159 (230)
T d1l2ta_          80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA  159 (230)
T ss_dssp             HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred             hhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhh
Confidence            0 1234444433        222211               122344556666653     2478899999999 69999


Q ss_pred             hCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          123 MLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       123 ll~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++.+|+++  +|||||++||+..+..+++.+++.
T Consensus       160 L~~~P~lL--llDEPTs~LD~~~~~~i~~~l~~l  191 (230)
T d1l2ta_         160 LANNPPII--LADQPTGALDSKTGEKIMQLLKKL  191 (230)
T ss_dssp             HTTCCSEE--EEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             hhcCCCEE--EecCCccccCHHHHHHHHHHHHHH
Confidence            99999999  999999999999999999988864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1e-35  Score=235.65  Aligned_cols=153  Identities=16%  Similarity=0.153  Sum_probs=121.3

Q ss_pred             cccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---ccccccCCCh
Q 029613            5 GNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---GLNKNLGFSA   81 (190)
Q Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---~~~~~i~~~~   81 (190)
                      |.++|++|+|+.+++|+|+||++++||+++|+||||||||||+++|+|++ +|.+|+|.++|.++..   ..+..++|.+
T Consensus         3 I~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~-~p~~G~i~i~G~~i~~~~~~~~~~i~~vp   81 (238)
T d1vpla_           3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI-KPSSGIVTVFGKNVVEEPHEVRKLISYLP   81 (238)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred             EEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCEEEECcEecccChHHHHhhEeEee
Confidence            67999999999999999999999999999999999999999999999987 8899999999988643   2233455554


Q ss_pred             hh--------HHHHHHHHH------------HHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeC
Q 029613           82 ED--------RTENIRRVG------------EVAKLFADAGLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNM  136 (190)
Q Consensus        82 ~~--------~~~~~~~~~------------~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDE  136 (190)
                      ++        ..+++....            .+...+...++.    ..+..+|+||+|| .+||+++.+|+++  +|||
T Consensus        82 q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~il--lLDE  159 (238)
T d1vpla_          82 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLA--ILDE  159 (238)
T ss_dssp             TTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEE--EEES
T ss_pred             eccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEE--EecC
Confidence            43        223322111            122233334443    2477899999999 6999999999999  9999


Q ss_pred             CchhhhhcChHHHHHHHHcCCCCC
Q 029613          137 PLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       137 P~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      ||++||+..++.+++.+++-.-+|
T Consensus       160 Pt~gLD~~~~~~i~~~i~~~~~~g  183 (238)
T d1vpla_         160 PTSGLDVLNAREVRKILKQASQEG  183 (238)
T ss_dssp             TTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhcC
Confidence            999999999999999997644344

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=4.5e-36  Score=240.24  Aligned_cols=154  Identities=19%  Similarity=0.208  Sum_probs=121.5

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----------
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----------   72 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----------   72 (190)
                      +|+++|++|+|++.++|+++||++++||+++|+||||||||||+++|+|++ ++++|.|+++|+++...           
T Consensus         2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~-~p~~G~I~~~G~~i~~~~~~~~~~~~~~   80 (258)
T d1b0ua_           2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE-KPSEGAIIVNGQNINLVRDKDGQLKVAD   80 (258)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred             eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCc-cCCCCCEEECCEEeccCCccchhccccc
Confidence            589999999999999999999999999999999999999999999999977 78999999999886421           


Q ss_pred             ------cccccCCChhh--------HHHHHHH-------------HHHHHHHHHHcCcce-----eecccCccHHHH-HH
Q 029613           73 ------LNKNLGFSAED--------RTENIRR-------------VGEVAKLFADAGLIC-----IASLISPYRKDR-DA  119 (190)
Q Consensus        73 ------~~~~i~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~-----~~~~lS~g~kqr-~i  119 (190)
                            .+..+++.+|+        ..+++..             ...+..++...++..     ++..|||||+|| .+
T Consensus        81 ~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~i  160 (258)
T d1b0ua_          81 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI  160 (258)
T ss_dssp             HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred             HhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHH
Confidence                  11122322221        1222111             122444555566532     478899999999 69


Q ss_pred             HHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCC
Q 029613          120 CRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKG  160 (190)
Q Consensus       120 arall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~  160 (190)
                      ||+++.+|+++  ++||||++||+..+..+++.+++.+-+|
T Consensus       161 AraL~~~P~ll--ilDEPT~gLD~~~~~~i~~ll~~l~~~g  199 (258)
T d1b0ua_         161 ARALAMEPDVL--LFDEPTSALDPELVGEVLRIMQQLAEEG  199 (258)
T ss_dssp             HHHHHTCCSEE--EEESTTTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCCEE--EeccccccCCHHHHHHHHHhhhhhcccC
Confidence            99999999999  9999999999999999999998755444

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=4.1e-35  Score=232.74  Aligned_cols=150  Identities=16%  Similarity=0.174  Sum_probs=115.9

Q ss_pred             ccccCcceeccC-ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            4 VGNSTNIFWQES-PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      ||+++||+|+|+ +.++|+|+||++++|++++|+||||||||||+++|+|++ +|.+|+|.++|.++..    .++..++
T Consensus         1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~i~   79 (242)
T d1mv5a_           1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY-QPTAGEITIDGQPIDNISLENWRSQIG   79 (242)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS-CCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred             CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhh-CCCCCEEEECCEEeccccHHHHHhheE
Confidence            589999999995 467999999999999999999999999999999999977 7899999999988753    2344566


Q ss_pred             CChhh-------HHHHHHH-------HHHHHHHHHHcCcc---------------eeecccCccHHHH-HHHHHhCCCCC
Q 029613           79 FSAED-------RTENIRR-------VGEVAKLFADAGLI---------------CIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        79 ~~~~~-------~~~~~~~-------~~~~~~~~~~~~~~---------------~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      |.+|+       ..+++..       -..+..........               ..+..|||||||| ++|||++.+|+
T Consensus        80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~  159 (242)
T d1mv5a_          80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK  159 (242)
T ss_dssp             EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred             EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            66554       2233210       00111111111111               1135699999999 69999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++  +|||||++||+...+.+.+.+++.
T Consensus       160 il--ilDEpts~LD~~~~~~i~~~l~~l  185 (242)
T d1mv5a_         160 IL--MLDEATASLDSESESMVQKALDSL  185 (242)
T ss_dssp             EE--EEECCSCSSCSSSCCHHHHHHHHH
T ss_pred             EE--EecCCccccCHHHHHHHHHHHHHH
Confidence            99  999999999999999999888764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=2.4e-34  Score=222.46  Aligned_cols=147  Identities=18%  Similarity=0.186  Sum_probs=114.1

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED   83 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~   83 (190)
                      .|+++|++++|+ .++|+++||++++|++++|+||||||||||+++|+|++ +|.+|.|.++|.++.. .+..++|.+++
T Consensus         2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~-~p~~G~I~~~g~~i~~-~~~~i~~~~~~   78 (200)
T d1sgwa_           2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL-KPLKGEIIYNGVPITK-VKGKIFFLPEE   78 (200)
T ss_dssp             EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGGG-GGGGEEEECSS
T ss_pred             eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccc-ccCCCEEEECCEehhH-hcCcEEEEeec
Confidence            478999999996 57999999999999999999999999999999999987 8899999999988753 11112222211


Q ss_pred             --------HHHHHHHH----------HHHHHHHHHcCc---ceeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhh
Q 029613           84 --------RTENIRRV----------GEVAKLFADAGL---ICIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELC  141 (190)
Q Consensus        84 --------~~~~~~~~----------~~~~~~~~~~~~---~~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~l  141 (190)
                              ..+++...          .++...+...++   ...+..||+||+|| .+||+++.+|+++  +|||||++|
T Consensus        79 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~ll--llDEPt~gL  156 (200)
T d1sgwa_          79 IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIY--VLDDPVVAI  156 (200)
T ss_dssp             CCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEE--EEESTTTTS
T ss_pred             ccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEE--EEcCccccc
Confidence                    12222221          122333444333   34577899999999 6999999999999  999999999


Q ss_pred             hhcChHHHHHHHHc
Q 029613          142 EARDPKGLYKLARA  155 (190)
Q Consensus       142 d~~~~~~~~~~~~~  155 (190)
                      |+..+..+++.+.+
T Consensus       157 D~~~~~~i~~~l~~  170 (200)
T d1sgwa_         157 DEDSKHKVLKSILE  170 (200)
T ss_dssp             CTTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999888877765

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.2e-34  Score=226.32  Aligned_cols=150  Identities=17%  Similarity=0.180  Sum_probs=113.6

Q ss_pred             ccccCcceeccCcc---ccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccc
Q 029613            4 VGNSTNIFWQESPI---GRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKN   76 (190)
Q Consensus         4 ~l~~~~l~~~~~~~---~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~   76 (190)
                      .|+++||+++|++.   .+|+++||++++||+++|+||||||||||+++|+|++ +|.+|.|.++|.++..    .++..
T Consensus        11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~   89 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY-QPTGGQLLLDGKPLPQYEHRYLHRQ   89 (251)
T ss_dssp             CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred             eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhccc-CCCcCEEEECCEecchhhhHHHHHH
Confidence            38999999999653   5899999999999999999999999999999999977 7899999999988643    12222


Q ss_pred             cCCChhh-------HHHHHHH--------------H--HHHHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCC
Q 029613           77 LGFSAED-------RTENIRR--------------V--GEVAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPD  126 (190)
Q Consensus        77 i~~~~~~-------~~~~~~~--------------~--~~~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~  126 (190)
                      ++|.+++       ..+++..              .  ......+...  ++.    ..+..|||||||| ++|||++.+
T Consensus        90 i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~  169 (251)
T d1jj7a_          90 VAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRK  169 (251)
T ss_dssp             EEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTC
T ss_pred             hhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccC
Confidence            3333332       1222110              0  0111122221  111    2356799999999 699999999


Q ss_pred             CCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          127 SNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       127 ~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      |+++  +|||||++||+.....+++.+++.
T Consensus       170 p~il--ilDEpTs~LD~~~~~~i~~~l~~l  197 (251)
T d1jj7a_         170 PCVL--ILDDATSALDANSQLQVEQLLYES  197 (251)
T ss_dssp             CSEE--EEESTTTTCCHHHHHHHHHHHHTC
T ss_pred             CcEE--EecCcCcccChhhHHHHHHHHHHH
Confidence            9999  999999999999999999999864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=4.5e-34  Score=226.47  Aligned_cols=149  Identities=19%  Similarity=0.229  Sum_probs=113.1

Q ss_pred             cccCcceeccC--ccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQES--PIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~--~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      |+++||+++|.  ...+|+++||++++|++++|+|+||||||||+++|+|++ +|.+|.|.++|.++..    .++..++
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~~~~~~~lr~~i~   80 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY-IPENGQVLIDGHDLALADPNWLRRQVG   80 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcC-CCCCCEEEECCEEecccchhhhhceEE
Confidence            57899999994  456999999999999999999999999999999999977 7899999999988743    2233344


Q ss_pred             CChhh-------HHHHHH------------HHHH---HHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613           79 FSAED-------RTENIR------------RVGE---VAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        79 ~~~~~-------~~~~~~------------~~~~---~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      |.+|+       ..+++.            ....   +...+...  +..    ..+..|||||||| ++|||++.+|++
T Consensus        81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i  160 (241)
T d2pmka1          81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI  160 (241)
T ss_dssp             EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred             EEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccch
Confidence            44443       222221            1111   11112111  111    1256799999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +  +|||||++||+...+.+++.+++.
T Consensus       161 l--ilDEpts~LD~~~~~~i~~~l~~l  185 (241)
T d2pmka1         161 L--IFDEATSALDYESEHVIMRNMHKI  185 (241)
T ss_dssp             E--EECCCCSCCCHHHHHHHHHHHHHH
T ss_pred             h--hhhCCccccCHHHHHHHHHHHHHH
Confidence            9  999999999999999999988763

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=1.7e-33  Score=224.78  Aligned_cols=149  Identities=21%  Similarity=0.275  Sum_probs=112.6

Q ss_pred             cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      |+++||+++|++  .++|+++||++++|++++|+||||||||||+++|+|++ +|.+|.|.++|.++..    .++..++
T Consensus        14 I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~i~   92 (253)
T d3b60a1          14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-DIDEGHILMDGHDLREYTLASLRNQVA   92 (253)
T ss_dssp             EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-CCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred             EEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhccc-CCCccEEEECCcccchhhhhhhhheEE
Confidence            789999999964  46999999999999999999999999999999999977 7899999999987643    1222333


Q ss_pred             CChhh-------HHHHH-------------HHH---HHHHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCC
Q 029613           79 FSAED-------RTENI-------------RRV---GEVAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSN  128 (190)
Q Consensus        79 ~~~~~-------~~~~~-------------~~~---~~~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~  128 (190)
                      |.+++       ..+++             ...   ..+...+...  ++.    ..+..|||||||| ++|||++.+|+
T Consensus        93 ~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~  172 (253)
T d3b60a1          93 LVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSP  172 (253)
T ss_dssp             EECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred             EEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCC
Confidence            33332       11111             110   1111222221  221    2356799999999 69999999999


Q ss_pred             eEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          129 FIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       129 il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ++  +|||||++||+.....+++.+++.
T Consensus       173 il--ilDEpts~LD~~~~~~i~~~l~~l  198 (253)
T d3b60a1         173 IL--ILDEATSALDTESERAIQAALDEL  198 (253)
T ss_dssp             EE--EEETTTSSCCHHHHHHHHHHHHHH
T ss_pred             EE--EeccccccCCHHHHHHHHHHHHHh
Confidence            99  999999999999999999888763

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.97  E-value=1.2e-32  Score=217.16  Aligned_cols=146  Identities=16%  Similarity=0.175  Sum_probs=115.5

Q ss_pred             ccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc--ccccccCCCh
Q 029613            4 VGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH--GLNKNLGFSA   81 (190)
Q Consensus         4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~--~~~~~i~~~~   81 (190)
                      .+++ ++.|+|++..+  |+||++. +++++|+||||||||||+|+|+|++ +|.+|+|.++|.++..  ..+..++|.+
T Consensus         2 ~l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~-~p~~G~I~~~G~~i~~~~~~~r~ig~v~   76 (240)
T d2onka1           2 FLKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIV-KPDRGEVRLNGADITPLPPERRGIGFVP   76 (240)
T ss_dssp             CEEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred             EEEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCC-CCCceEEEECCEECCcCCHHHcCceeec
Confidence            4677 67899998765  8999995 6899999999999999999999987 8899999999988753  2233466666


Q ss_pred             hh--------HHHHHH----------HHHHHHHHHHHcCcce----eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCc
Q 029613           82 ED--------RTENIR----------RVGEVAKLFADAGLIC----IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPL  138 (190)
Q Consensus        82 ~~--------~~~~~~----------~~~~~~~~~~~~~~~~----~~~~lS~g~kqr-~iarall~~~~il~vllDEP~  138 (190)
                      |+        ..+++.          .-..+.++++..++..    .+..|||||||| +||||++.+|+++  +|||||
T Consensus        77 Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~il--llDEPt  154 (240)
T d2onka1          77 QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLL--LLDEPL  154 (240)
T ss_dssp             SSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSB--EEESTT
T ss_pred             cchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCce--EecCcc
Confidence            54        222221          1123445555566643    488899999999 6999999999999  999999


Q ss_pred             hhhhhcChHHHHHHHHcC
Q 029613          139 ELCEARDPKGLYKLARAG  156 (190)
Q Consensus       139 ~~ld~~~~~~~~~~~~~~  156 (190)
                      ++||+..+..+++.+++.
T Consensus       155 s~LD~~~~~~i~~~i~~l  172 (240)
T d2onka1         155 SAVDLKTKGVLMEELRFV  172 (240)
T ss_dssp             SSCCHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHH
Confidence            999999999999888763

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.97  E-value=7.4e-33  Score=220.99  Aligned_cols=149  Identities=21%  Similarity=0.242  Sum_probs=113.7

Q ss_pred             cccCcceeccCc--cccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc----ccccccC
Q 029613            5 GNSTNIFWQESP--IGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH----GLNKNLG   78 (190)
Q Consensus         5 l~~~~l~~~~~~--~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~----~~~~~i~   78 (190)
                      |+++|++|+|++  .++|+|+||++++|++++|+|+||||||||+++|+|++ .+.+|.|.++|.++..    .++..++
T Consensus        17 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~~~~~~~lr~~i~   95 (255)
T d2hyda1          17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-DVTSGQILIDGHNIKDFLTGSLRNQIG   95 (255)
T ss_dssp             EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-CCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred             EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcC-CccccccccCCEEcccCCHHHhhheee
Confidence            789999999965  56999999999999999999999999999999999977 8899999999988753    2333344


Q ss_pred             CChhh-------HHHHHHH------HHHHH---------HHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCe
Q 029613           79 FSAED-------RTENIRR------VGEVA---------KLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNF  129 (190)
Q Consensus        79 ~~~~~-------~~~~~~~------~~~~~---------~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~i  129 (190)
                      |.+++       ..+++..      -.++.         ..+...  ++.    ..+..|||||+|| ++|||++.+|++
T Consensus        96 ~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~i  175 (255)
T d2hyda1          96 LVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI  175 (255)
T ss_dssp             EECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSE
T ss_pred             eeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCE
Confidence            44433       2222210      01111         111111  111    2245699999999 699999999999


Q ss_pred             EEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          130 IEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       130 l~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      +  +|||||++||+...+.+++.+++.
T Consensus       176 l--ilDEpts~LD~~t~~~i~~~l~~l  200 (255)
T d2hyda1         176 L--ILDEATSALDLESESIIQEALDVL  200 (255)
T ss_dssp             E--EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             E--EEeCccccCCHHHHHHHHHHHHHH
Confidence            9  999999999999999999988753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=7.2e-30  Score=201.17  Aligned_cols=151  Identities=17%  Similarity=0.158  Sum_probs=109.1

Q ss_pred             cccccCcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccc----ccccC
Q 029613            3 TVGNSTNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGL----NKNLG   78 (190)
Q Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~----~~~i~   78 (190)
                      .+++++|++++|    +++++||++++||+++|+||||||||||+++|+|+  .+++|+|.++|+++....    ....+
T Consensus         2 ~il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl--~~~~G~I~~~g~~i~~~~~~~~~~~~~   75 (231)
T d1l7vc_           2 IVMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM--TSGKGSIQFAGQPLEAWSATKLALHRA   75 (231)
T ss_dssp             EEEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTS--CCCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred             eEEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCceEEEECCEECCcCCHHHHHhhce
Confidence            368899998765    69999999999999999999999999999999994  458899999998764310    00000


Q ss_pred             CChh--------hHHHHHHH-------HHHHHHHHHHcCcc----eeecccCccHHHH-HHHHHhCC-------CCCeEE
Q 029613           79 FSAE--------DRTENIRR-------VGEVAKLFADAGLI----CIASLISPYRKDR-DACRAMLP-------DSNFIE  131 (190)
Q Consensus        79 ~~~~--------~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~lS~g~kqr-~iarall~-------~~~il~  131 (190)
                      +..+        ...+++..       -..+..+....++.    ..+..|||||+|| .+||++++       +|+++ 
T Consensus        76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~ll-  154 (231)
T d1l7vc_          76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLL-  154 (231)
T ss_dssp             EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEE-
T ss_pred             eeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEE-
Confidence            1000        01111110       01122333333433    3467899999999 69999985       67899 


Q ss_pred             EEeeCCchhhhhcChHHHHHHHHcCCCCCc
Q 029613          132 VFMNMPLELCEARDPKGLYKLARAGKIKGL  161 (190)
Q Consensus       132 vllDEP~~~ld~~~~~~~~~~~~~~~~~~~  161 (190)
                       +|||||++||+..+..+++.+++.+.+|.
T Consensus       155 -llDEPt~gLD~~~~~~i~~~i~~l~~~g~  183 (231)
T d1l7vc_         155 -LLDEPMNSLDVAQQSALDKILSALCQQGL  183 (231)
T ss_dssp             -EESSCSTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred             -EEcCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence             99999999999999999998887554453

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.3e-29  Score=203.46  Aligned_cols=144  Identities=17%  Similarity=0.152  Sum_probs=98.5

Q ss_pred             cCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc---------ccccccCCChhhH
Q 029613           14 ESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH---------GLNKNLGFSAEDR   84 (190)
Q Consensus        14 ~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~---------~~~~~i~~~~~~~   84 (190)
                      +.+.++|+|+||++++|++++|+||||||||||+++|+|++ ++.+|.|.++|+--..         .+..++.+.....
T Consensus        46 ~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~-~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~  124 (281)
T d1r0wa_          46 LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL-EASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYD  124 (281)
T ss_dssp             HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS-CCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCC
T ss_pred             CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC-cCCCcEEEECCEEEEEeccccccCceeecccccccccc
Confidence            35678999999999999999999999999999999999987 7899999999852110         1111111111000


Q ss_pred             HHHHHHHHH---HHHHHHHc--Ccc----eeecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHH
Q 029613           85 TENIRRVGE---VAKLFADA--GLI----CIASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLAR  154 (190)
Q Consensus        85 ~~~~~~~~~---~~~~~~~~--~~~----~~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~  154 (190)
                      ......+..   ....+...  +..    ..+..|||||||| .+|||++.+|+++  +|||||++||+...+.+++.+.
T Consensus       125 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~il--lLDEPts~LD~~~~~~i~~~~~  202 (281)
T d1r0wa_         125 EYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY--LLDSPFGYLDVFTEEQVFESCV  202 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEE--EEESCCCSSCHHHHHHHHHHCC
T ss_pred             chHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccch--hhcCccccCCHHHHHHHHHHHH
Confidence            000111111   11111111  111    1244699999999 6999999999999  9999999999999888887644


Q ss_pred             cCCCCC
Q 029613          155 AGKIKG  160 (190)
Q Consensus       155 ~~~~~~  160 (190)
                      ....++
T Consensus       203 ~~~~~~  208 (281)
T d1r0wa_         203 CKLMAN  208 (281)
T ss_dssp             CCCTTT
T ss_pred             HHhhCC
Confidence            433334

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.91  E-value=5e-24  Score=164.96  Aligned_cols=173  Identities=53%  Similarity=0.826  Sum_probs=151.6

Q ss_pred             CcceeccCccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHHh-hCCCcEEEEcCcccccccccccCCChhhHHH
Q 029613            8 TNIFWQESPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELY-SRGKLSYILDGDNLRHGLNKNLGFSAEDRTE   86 (190)
Q Consensus         8 ~~l~~~~~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~-~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~   86 (190)
                      .|++|.-......++..+.-++|.++||+|.|||||||+++.|...+. ..+...+.++|+.+...+....+|...++.+
T Consensus         2 ~~~~~~~~~~~~~~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~~l~ys~~~r~~   81 (208)
T d1m7ga_           2 TNITFHASALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNE   81 (208)
T ss_dssp             CCCCHHHHCCCHHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHH
T ss_pred             CCcccccCCcCHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcCCCCCChhHHHH
Confidence            466666555566677788889999999999999999999999987763 3355678999999988887788999999999


Q ss_pred             HHHHHHHHHHHHHHcCcceeecccCccHHHHHHHHHhC--------CCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCC
Q 029613           87 NIRRVGEVAKLFADAGLICIASLISPYRKDRDACRAML--------PDSNFIEVFMNMPLELCEARDPKGLYKLARAGKI  158 (190)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~lS~g~kqr~iarall--------~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~  158 (190)
                      +..+...++..+...+...++...++....|..+|.+.        ...++++|++|.|...|..|+.+++|+.+..+.+
T Consensus        82 ~~~r~~~~a~~~~~~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~y~~~~~~~~  161 (208)
T d1m7ga_          82 NIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVI  161 (208)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHhccCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccchhhhhcCcc
Confidence            99999999999999999999999999998888888764        2346889999999999999999999999999999


Q ss_pred             CCcccccccccCCCCCCceEEec
Q 029613          159 KGLLSIFSFCYYEKLIPRTCKKK  181 (190)
Q Consensus       159 ~~~~~~~~~~~~~p~~p~~~~~~  181 (190)
                      +++.|++.+ ||+|..|++++|-
T Consensus       162 ~~~~gvd~~-ye~P~~~dl~Idt  183 (208)
T d1m7ga_         162 KEFTGISAP-YEAPANPEVHVKN  183 (208)
T ss_dssp             SSCBTTTBC-CCCCSSCSEEEEC
T ss_pred             cceeccccc-CCCCCCCcEEEeC
Confidence            999999999 9999999999984

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.50  E-value=5e-13  Score=97.86  Aligned_cols=155  Identities=34%  Similarity=0.530  Sum_probs=95.8

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHHhhCC-CcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcce
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRG-KLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLIC  105 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~-~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (190)
                      -.+|.+++|+|++||||||++++|+..|...+ .....++.+..............+.......................
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAV   82 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhHHhhhccccccchhHHHHHHHHHHHHHHhhhhhccccee
Confidence            46899999999999999999999999885322 22333343333222211122222222222222222222232323333


Q ss_pred             eecccCccHHHH-HHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEecC
Q 029613          106 IASLISPYRKDR-DACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKI  182 (190)
Q Consensus       106 ~~~~lS~g~kqr-~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~  182 (190)
                      .....+...... ...........++.+..+.+......+.....+.....+....+.++... |+.|..||+++|--
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~di~IDT~  159 (183)
T d1m8pa3          83 IAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDP-YETPEKADLVVDFS  159 (183)
T ss_dssp             EEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBC-CCCCSSCSEEECTT
T ss_pred             ecccchhhhHHHHHHHHhhcccchhhhhhHHHHHHHHHhhhhhhcccchhhchhhhhhhhccc-ccCCCCCcEEEECC
Confidence            333333333333 33333333445666689999999988888888888888888888999999 99999999999843

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.3e-13  Score=99.48  Aligned_cols=152  Identities=56%  Similarity=0.956  Sum_probs=73.0

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcceeec
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLICIAS  108 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (190)
                      +|.+++|+|++||||||+++.|+..+.....-...+.++...........+..........+...........+......
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS   97 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            68899999999999999999999988655444556665555443333344555555554544444444444444444444


Q ss_pred             ccCccHHHHHHHHHhCC--CCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEec
Q 029613          109 LISPYRKDRDACRAMLP--DSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKK  181 (190)
Q Consensus       109 ~lS~g~kqr~iarall~--~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~  181 (190)
                      ........+...+.+..  .-.+..+....+...+..+..+.............+...+.. |++|..|++++|-
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~dl~IdT  171 (195)
T d1x6va3          98 FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSE-YEKPEAPELVLKT  171 (195)
T ss_dssp             CCCCCHHHHHHHHHHHHTTTCCEEEEEECC------------------------------C-CCCCSSCSEEECT
T ss_pred             cccchHHHHHHHHHHHhccccccccccchhheeeehhhccchhhhhhhhhhhhhhhhhccc-cCCCCCCCEEEEC
Confidence            33333332322222211  112333355666555555555555544454555666778888 9999999999985

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.22  E-value=4.3e-14  Score=104.32  Aligned_cols=104  Identities=13%  Similarity=0.061  Sum_probs=55.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccccc-cc---ccCCChhhHHHHHHHHHHHHHHHHHcCcceeec
Q 029613           33 VWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGL-NK---NLGFSAEDRTENIRRVGEVAKLFADAGLICIAS  108 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~-~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (190)
                      ++|+||||||||||+++|+|.+ ++..|.+...+....... +.   ........... ..............+......
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   80 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERL-GKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIF-SSKFFTSKKLVGSYGVNVQYF   80 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH-GGGEEEEEEEEEC------CCEEEEEETTCCEEEE-EETTCCCSSEETTEEECHHHH
T ss_pred             EEEECCCCcHHHHHHHHHHhcC-CCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHH-hhhhhhhhhhhhhhhcCcchh
Confidence            7899999999999999999998 556676766543321100 00   00000000000 000000000000000000112


Q ss_pred             ccCccHHHH-HHHHHhCCCCCeEEEEeeCCchh
Q 029613          109 LISPYRKDR-DACRAMLPDSNFIEVFMNMPLEL  140 (190)
Q Consensus       109 ~lS~g~kqr-~iarall~~~~il~vllDEP~~~  140 (190)
                      .++++++++ .+++++..+|+++  ++|||...
T Consensus        81 ~~~~~~~~~~~l~~~~~~~~~vl--llDE~~~~  111 (178)
T d1ye8a1          81 EELAIPILERAYREAKKDRRKVI--IIDEIGKM  111 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEE--EECCCSTT
T ss_pred             hhhhhhhHHHHHHHHHhcCCCce--eecCCCcc
Confidence            356777888 5999999999999  99998544

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.14  E-value=3e-10  Score=82.49  Aligned_cols=144  Identities=17%  Similarity=0.155  Sum_probs=81.9

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-------------cccccCCChhhHHHHH-HHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-------------LNKNLGFSAEDRTENI-RRVGEVA   95 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-------------~~~~i~~~~~~~~~~~-~~~~~~~   95 (190)
                      ..+++|.|++||||||+++.|+..+.   ...+.++++.+...             ......+.......+. +......
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP---EPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGV   79 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS---SCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC---CCeEEeecchhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999762   23344444332110             0000111111111222 2223333


Q ss_pred             HHHHHcCccee-ecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCC
Q 029613           96 KLFADAGLICI-ASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLI  174 (190)
Q Consensus        96 ~~~~~~~~~~~-~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  174 (190)
                      ..+...+...+ ..........+...........+..|+|+.|...+..|.      ..+.++..+........++.|..
T Consensus        80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~------~~R~~~~~~~~~~~~~~~~~~~~  153 (178)
T d1qhxa_          80 VAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRE------TARGDRVAGMAAKQAYVVHEGVE  153 (178)
T ss_dssp             HHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHH------HHTSSSCTTHHHHHTTGGGTTCC
T ss_pred             HHHHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHH------HhcCCcchhhhhhhhhhhhcCCC
Confidence            44444444333 333445554454455555566676679999988776553      23445666655555555888999


Q ss_pred             CceEEecC
Q 029613          175 PRTCKKKI  182 (190)
Q Consensus       175 p~~~~~~~  182 (190)
                      +|++||--
T Consensus       154 ~dl~IDts  161 (178)
T d1qhxa_         154 YDVEVDTT  161 (178)
T ss_dssp             CSEEEETT
T ss_pred             CCEEEECC
Confidence            99999864

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=3.3e-10  Score=82.21  Aligned_cols=111  Identities=23%  Similarity=0.333  Sum_probs=60.4

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccc-----cccccCCChhhHHHHHHHHHHHHHHHHHc
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHG-----LNKNLGFSAEDRTENIRRVGEVAKLFADA  101 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  101 (190)
                      .+.+.++.|+|++||||||+++.|+..+.   .  ..++.+.+...     ......+...........+..........
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l~---~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQLH---A--AFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRT   77 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHHT---C--EEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC---C--CeechhhhhHHHHhhhhccCcceehhhhHHHHHHHHHHHHHHHhc
Confidence            46788999999999999999999999772   1  23443333211     11111222222333333333333333233


Q ss_pred             CcceeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhc
Q 029613          102 GLICIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEAR  144 (190)
Q Consensus       102 ~~~~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~  144 (190)
                      ...............+..++.+...  +..++||.|...+-.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~l~~~~e~~~~R  118 (171)
T d1knqa_          78 NKVSLIVCSALKKHYRDLLREGNPN--LSFIYLKGDFDVIESR  118 (171)
T ss_dssp             CSEEEEECCCCSHHHHHHHHTTCTT--EEEEEEECCHHHHHHH
T ss_pred             cCceEeeccchHHHHHHHHHHhCCC--ceEEeecCCHHHHHHH
Confidence            3333333333344455667766554  4445999998876544

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=9e-09  Score=71.20  Aligned_cols=96  Identities=9%  Similarity=0.105  Sum_probs=66.9

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHHhh-CCCcEE-EEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCcc
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKELYS-RGKLSY-ILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGLI  104 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l~~-~~~g~i-~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (190)
                      -++|..+++.|.+||||||++++|.-.+.. .|.-.| .++|+++.                   ++..++..+...|  
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~-------------------ri~fva~e~~k~G--   61 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKT-------------------ELLSLIQDFIGSG--   61 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCH-------------------HHHTTHHHHHHTT--
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCHH-------------------HHHHHHHHHHhcC--
Confidence            468999999999999999999999777744 333333 45666443                   2222333332222  


Q ss_pred             eeecccCccHHHHHHHHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcCCCCCcccccccccCCCCCCceEEecCC
Q 029613          105 CIASLISPYRKDRDACRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAGKIKGLLSIFSFCYYEKLIPRTCKKKIS  183 (190)
Q Consensus       105 ~~~~~lS~g~kqr~iarall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~  183 (190)
                                             .++.|..+-|...|+.++++++|                . |+.|.+||+++|--+
T Consensus        62 -----------------------~~~iv~~~~p~e~~~~~d~~g~y----------------~-~~~~~npDLvIdT~~  100 (122)
T d1g8fa3          62 -----------------------SGLIIPDQWEDDKDSVVGKQNVY----------------L-LDTSSSADIQLESAD  100 (122)
T ss_dssp             -----------------------CEEEESSCCCGGGGGGSCCTTEE----------------E-EESSTTCSEECSSTT
T ss_pred             -----------------------CEEEEecCCcHHHHHhcCCCCeE----------------E-ecCCCCCCeEEECCC
Confidence                                   25545667888889999988887                3 899999999988543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.65  E-value=1.1e-07  Score=67.98  Aligned_cols=110  Identities=19%  Similarity=0.136  Sum_probs=57.6

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhh---HHHHHHHHHHHHHHHHHcCcceee
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAED---RTENIRRVGEVAKLFADAGLICIA  107 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  107 (190)
                      .++.|+||+||||||+++.|+..+    ...++++++.+..............   .......+......+...+...++
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii   78 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL----DNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVL   78 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS----SSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc----CCCEEEehHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            478999999999999999999865    2345667666544322211111111   111122222222222233433333


Q ss_pred             cccCccHHHH---HHHHHhCCCCCeEEEEeeCCchhhhhc
Q 029613          108 SLISPYRKDR---DACRAMLPDSNFIEVFMNMPLELCEAR  144 (190)
Q Consensus       108 ~~lS~g~kqr---~iarall~~~~il~vllDEP~~~ld~~  144 (190)
                      .........+   ..+........++.++|+.|...+-.|
T Consensus        79 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R  118 (176)
T d2bdta1          79 DYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRR  118 (176)
T ss_dssp             ESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHH
Confidence            3322222222   344555555555555889888876554

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.61  E-value=8.2e-08  Score=69.24  Aligned_cols=40  Identities=30%  Similarity=0.420  Sum_probs=32.4

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccccc
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRH   71 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~   71 (190)
                      .|.+++|.|++||||||+++.|+..+   +...+.++++.+..
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l---g~~~~~~~~d~~~~   42 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDLWG   42 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEecHHHHHH
Confidence            58999999999999999999987643   44567788877654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.60  E-value=1.2e-07  Score=66.95  Aligned_cols=36  Identities=31%  Similarity=0.374  Sum_probs=27.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      .+++|+|++||||||+++.|...    ..+.+.++.+++.
T Consensus         3 klIii~G~pGsGKTTla~~L~~~----~~~~~~~~~d~~~   38 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDDYR   38 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh----CCCCEEechHHHH
Confidence            57899999999999999987542    2346677766654

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=1.9e-07  Score=68.41  Aligned_cols=99  Identities=18%  Similarity=0.117  Sum_probs=56.8

Q ss_pred             ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHHHHHHHHHHHHcCc
Q 029613           24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRRVGEVAKLFADAGL  103 (190)
Q Consensus        24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (190)
                      .+.-++.+++.++|++||||||+++.+..   .  .+.++++.+++..            ..    .+..........+.
T Consensus         8 ~~~~~~p~liil~G~pGsGKST~a~~l~~---~--~~~~~i~~D~~~~------------~~----~~~~~~~~~l~~g~   66 (172)
T d1yj5a2           8 SLLSPNPEVVVAVGFPGAGKSTFIQEHLV---S--AGYVHVNRDTLGS------------WQ----RCVSSCQAALRQGK   66 (172)
T ss_dssp             CSSCSSCCEEEEECCTTSSHHHHHHHHTG---G--GTCEEEEHHHHCS------------HH----HHHHHHHHHHHTTC
T ss_pred             ccCCCCCEEEEEECCCCCCHHHHHHHHHH---h--cCCEEEchHHHHH------------HH----HHHHHHHHHHHCCC
Confidence            34456778999999999999999987643   2  2345666554431            01    11111122223445


Q ss_pred             ceeecccCccHHHH----HHHHHhCCCCCeEEEEeeCCchhhhhcC
Q 029613          104 ICIASLISPYRKDR----DACRAMLPDSNFIEVFMNMPLELCEARD  145 (190)
Q Consensus       104 ~~~~~~lS~g~kqr----~iarall~~~~il~vllDEP~~~ld~~~  145 (190)
                      ..++........+|    .+|+..=-  ++..|+||-|...+-.|.
T Consensus        67 ~vIiD~t~~~~~~R~~~~~~a~~~~~--~~~~v~l~~~~e~~~~Rn  110 (172)
T d1yj5a2          67 RVVIDNTNPDVPSRARYIQCAKDAGV--PCRCFNFCATIEQARHNN  110 (172)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTC--CEEEEEECCCHHHHHHHH
T ss_pred             CceeeCcCCCHHHHHHHHHHHHhcCC--CEEEEEeCCCHHHHHHHH
Confidence            45555544444444    35555433  344449999998886654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=2.7e-07  Score=66.03  Aligned_cols=27  Identities=33%  Similarity=0.487  Sum_probs=23.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCC
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRG   58 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~   58 (190)
                      +++|+|++|||||||++.|...+...|
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g   30 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARG   30 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence            789999999999999999999885444

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.23  E-value=4.2e-07  Score=65.93  Aligned_cols=33  Identities=21%  Similarity=0.382  Sum_probs=25.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      .+.|+|++||||||+++.|+..+.     .-+++.+.+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg-----~~~id~D~~   36 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALG-----YEFVDTDIF   36 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT-----CEEEEHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC-----CCEEehhhh
Confidence            466899999999999999998772     236776654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.19  E-value=3.6e-06  Score=62.09  Aligned_cols=40  Identities=18%  Similarity=0.263  Sum_probs=31.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      .+++++|++||||||+++.|+..+...+.....++.+.+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r   42 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYR   42 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccccee
Confidence            5789999999999999999998875445545566665543

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.15  E-value=1.3e-06  Score=63.79  Aligned_cols=40  Identities=35%  Similarity=0.404  Sum_probs=29.8

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      ...-++||.|++|||||||++.|...+...+.....+..+
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~   59 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD   59 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhccccccceecccc
Confidence            3445899999999999999999998875544444444433

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.09  E-value=2e-06  Score=61.76  Aligned_cols=28  Identities=29%  Similarity=0.234  Sum_probs=24.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCC
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRG   58 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~   58 (190)
                      .+++|+|++|||||||+..|...|...|
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g   29 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREG   29 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            3789999999999999999998885544

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=9.4e-07  Score=62.21  Aligned_cols=23  Identities=30%  Similarity=0.600  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .++|+||+||||||+++.|+..+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999876

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.8e-06  Score=61.97  Aligned_cols=26  Identities=38%  Similarity=0.537  Sum_probs=23.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhC
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSR   57 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~   57 (190)
                      .+.|+||+|+|||||++.++..+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~   28 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSS   28 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            58899999999999999999988543

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.03  E-value=1.4e-06  Score=63.72  Aligned_cols=25  Identities=36%  Similarity=0.517  Sum_probs=23.0

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      |.+++|+|||||||||+++.|....
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            8899999999999999999998765

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.02  E-value=1.5e-06  Score=62.20  Aligned_cols=27  Identities=41%  Similarity=0.639  Sum_probs=24.3

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++|-.++|+|++||||||+++.|+..+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            467789999999999999999998865

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=0.0001  Score=55.34  Aligned_cols=44  Identities=23%  Similarity=0.416  Sum_probs=29.1

Q ss_pred             ccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613           24 KLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus        24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      +++-++..++.++||+|+||||.+-=|+..+...+.-...+.-+
T Consensus         3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~D   46 (211)
T d2qy9a2           3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD   46 (211)
T ss_dssp             CCCSCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecc
Confidence            45556678999999999999776655666564444433344333

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.01  E-value=3.6e-05  Score=57.99  Aligned_cols=36  Identities=22%  Similarity=0.378  Sum_probs=25.8

Q ss_pred             cccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC
Q 029613           23 QKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG   58 (190)
Q Consensus        23 ~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~   58 (190)
                      +++.-.+..++.++||+|+||||.+-=|+..+...+
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~   39 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG   39 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            455556778999999999999876555555553433

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.00  E-value=3.3e-06  Score=60.74  Aligned_cols=29  Identities=31%  Similarity=0.408  Sum_probs=24.8

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHHhhCC
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKELYSRG   58 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l~~~~   58 (190)
                      +.+++|.|++||||||+++.|+..+...+
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~   29 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG   29 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            36899999999999999999999885333

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=1.3e-07  Score=69.06  Aligned_cols=34  Identities=24%  Similarity=0.199  Sum_probs=28.2

Q ss_pred             ccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        20 l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +++.++++.+| ++.|+|+|||||||++.+|.-.+
T Consensus        15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence            45566777665 88999999999999999998665

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.97  E-value=1.9e-06  Score=61.78  Aligned_cols=24  Identities=33%  Similarity=0.266  Sum_probs=21.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..++|+|++|||||||++.|+..+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999866

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.97  E-value=2.1e-06  Score=61.21  Aligned_cols=22  Identities=32%  Similarity=0.530  Sum_probs=20.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++|+|++||||||+++.|+..+
T Consensus         7 I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999998866

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.92  E-value=3.1e-06  Score=62.34  Aligned_cols=27  Identities=26%  Similarity=0.430  Sum_probs=23.9

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+-.+++|+||+||||||+++.|+..+
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999998865

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.90  E-value=3.5e-06  Score=61.88  Aligned_cols=27  Identities=33%  Similarity=0.521  Sum_probs=24.0

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+..+++|+||+||||||+++.|+..+
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999998866

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.88  E-value=0.00013  Score=54.59  Aligned_cols=41  Identities=24%  Similarity=0.426  Sum_probs=28.4

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      +.+.++.++||+|+||||.+-=|+..+...+.-...+.-+.
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt   48 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT   48 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccc
Confidence            44678999999999998877667766655454444444443

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.87  E-value=8.5e-05  Score=55.77  Aligned_cols=32  Identities=25%  Similarity=0.326  Sum_probs=19.7

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCC
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGK   59 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~   59 (190)
                      +...++.++||+|+||||.+-=|+..+...+.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~   41 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGF   41 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence            46689999999999998776556655544433

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.85  E-value=3.1e-06  Score=62.41  Aligned_cols=28  Identities=25%  Similarity=0.418  Sum_probs=24.9

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +.++.+++|+||+||||||+++.|+..+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999999998854

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.84  E-value=5.6e-06  Score=63.35  Aligned_cols=42  Identities=21%  Similarity=0.349  Sum_probs=32.3

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      ..+....+.|.||+|||||||++.|++.+   +...+.++.+++.
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~---~~~~~~i~~d~~~   69 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDTFK   69 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHh---hcceEEEecHHHH
Confidence            44455678899999999999999999976   2345677776654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.84  E-value=6.8e-05  Score=56.14  Aligned_cols=39  Identities=33%  Similarity=0.491  Sum_probs=26.7

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      ++.++.++||+|+||||.+-=|+..+...+.-..++.-+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~D   43 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD   43 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEec
Confidence            578999999999999877666676664444433344433

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.82  E-value=1e-05  Score=58.33  Aligned_cols=31  Identities=32%  Similarity=0.408  Sum_probs=25.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCCCcE
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLS   61 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~   61 (190)
                      .++.|.|++||||||+++.|+..+...+...
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~   32 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINN   32 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCE
Confidence            3678899999999999999999885444443

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=5.4e-06  Score=61.80  Aligned_cols=25  Identities=24%  Similarity=0.357  Sum_probs=22.7

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .-++||.|++||||||+++.|...+
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999998876

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.79  E-value=6.7e-06  Score=58.96  Aligned_cols=32  Identities=47%  Similarity=0.592  Sum_probs=25.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           33 VWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      ++|+|++||||||+++.|+..+.     ..++|.+.+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~-----~~~~d~d~~   34 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD-----LVFLDSDFL   34 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT-----CEEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC-----CCEEecCch
Confidence            67889999999999999999772     236665443

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.78  E-value=1.4e-05  Score=60.09  Aligned_cols=32  Identities=28%  Similarity=0.335  Sum_probs=24.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL   64 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~   64 (190)
                      |++|+|+.|||||||++.|...+ ..+.....+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~-~~~~~~~iv   33 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL-EDNYKVAYV   33 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-TTTSCEEEE
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH-hhCCeEEEE
Confidence            68999999999999999998765 333333344

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=7.9e-06  Score=59.84  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=21.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      -+++|+||+||||||.++.|+..+
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999999866

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=8.7e-06  Score=60.98  Aligned_cols=26  Identities=31%  Similarity=0.446  Sum_probs=23.1

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +|.++.|+||||||||||.+.|....
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999999887653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.72  E-value=7.2e-06  Score=64.14  Aligned_cols=47  Identities=15%  Similarity=0.114  Sum_probs=34.6

Q ss_pred             cccCccHHHH-HH----HHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHcC
Q 029613          108 SLISPYRKDR-DA----CRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARAG  156 (190)
Q Consensus       108 ~~lS~g~kqr-~i----arall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~~  156 (190)
                      ..+|.|+++. .+    +......+.++  ++|||-++|++...+.+.+.+++.
T Consensus       218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~--~iDEpe~~Lhp~~~~~l~~~l~~~  269 (308)
T d1e69a_         218 SLLSGGEKALVGLALLFALMEIKPSPFY--VLDEVDSPLDDYNAERFKRLLKEN  269 (308)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTTSCCSEE--EEESCCSSCCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHhhHHHHHhhhhhhhhccCchh--hhhhccccCCHHHHHHHHHHHHHh
Confidence            4578888876 22    22234455777  999999999999999999888753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.71  E-value=1.3e-05  Score=58.61  Aligned_cols=27  Identities=33%  Similarity=0.450  Sum_probs=23.5

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++|--+.|+||+||||||+++.|+..+
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence            356778899999999999999999866

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.71  E-value=1e-05  Score=58.39  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=20.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +.|+||+||||||+++.|+..+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999998876

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.70  E-value=1.1e-05  Score=57.88  Aligned_cols=22  Identities=45%  Similarity=0.655  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +.|+|++||||||+.+.|+..+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5577999999999999999887

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=2.2e-05  Score=58.78  Aligned_cols=37  Identities=24%  Similarity=0.462  Sum_probs=30.7

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL   64 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~   64 (190)
                      ++|-+++|.|+.||||||+++.|...+...+...+.+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~   37 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL   37 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            4789999999999999999999999886555555554

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.69  E-value=7e-06  Score=64.68  Aligned_cols=40  Identities=25%  Similarity=0.464  Sum_probs=29.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      -++||.|+|||||||+++.|..++...+-....+.+++++
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            4899999999999999999999885444445677777764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1.9e-05  Score=58.66  Aligned_cols=35  Identities=29%  Similarity=0.357  Sum_probs=28.8

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEE
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYI   63 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~   63 (190)
                      +|.+++|-|+.||||||+++.|...+...|...+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~   35 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMV   35 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence            58899999999999999999999988655543333

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=1.4e-05  Score=59.29  Aligned_cols=23  Identities=43%  Similarity=0.619  Sum_probs=21.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      |++|.||+||||||+++.|+..+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            89999999999999999999877

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.65  E-value=1.2e-05  Score=58.72  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=21.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      -.++|+||+||||||+++.|+..+
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999998876

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.64  E-value=1.6e-05  Score=57.66  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+.|+||+||||||+++.|+..+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999876

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.62  E-value=1.8e-05  Score=58.96  Aligned_cols=24  Identities=38%  Similarity=0.462  Sum_probs=21.6

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      -+++|.||+||||||.++.|+..+
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            367889999999999999999877

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=1.6e-05  Score=64.42  Aligned_cols=46  Identities=11%  Similarity=0.040  Sum_probs=35.9

Q ss_pred             cccCccHHHH-HH----HHHhCCCCCeEEEEeeCCchhhhhcChHHHHHHHHc
Q 029613          108 SLISPYRKDR-DA----CRAMLPDSNFIEVFMNMPLELCEARDPKGLYKLARA  155 (190)
Q Consensus       108 ~~lS~g~kqr-~i----arall~~~~il~vllDEP~~~ld~~~~~~~~~~~~~  155 (190)
                      ..+|+|++.+ .+    |.....+++++  +||||+++||+.....+.+.+.+
T Consensus       331 ~~lSgGEk~~~~lal~lal~~~~~~pil--ilDE~d~~Ld~~~~~~~~~~l~~  381 (427)
T d1w1wa_         331 EYLSGGEKTVAALALLFAINSYQPSPFF--VLDEVDAALDITNVQRIAAYIRR  381 (427)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEE--EESSTTTTCCHHHHHHHHHHHHH
T ss_pred             hhhccchHHHHHHHHHHHHhcCCCCCEE--EEeCCCCCCCHHHHHHHHHHHHH
Confidence            4569999877 23    33335566888  99999999999999999988865

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.59  E-value=2e-05  Score=57.09  Aligned_cols=23  Identities=35%  Similarity=0.526  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      -+.|+||+||||||+++.|+..+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36889999999999999999876

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=2.5e-05  Score=56.39  Aligned_cols=23  Identities=22%  Similarity=0.231  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+.|+||+||||||.++.|+..+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999998866

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.50  E-value=2.3e-05  Score=57.25  Aligned_cols=23  Identities=43%  Similarity=0.481  Sum_probs=20.1

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      .-++||+|++||||||+++.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998753

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.48  E-value=6.4e-05  Score=55.24  Aligned_cols=33  Identities=27%  Similarity=0.444  Sum_probs=27.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL   64 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~   64 (190)
                      +++|.|..||||||+++.|...+...|...+.+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~   34 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL   34 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            688999999999999999999886556555554

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=2.7e-05  Score=56.97  Aligned_cols=22  Identities=45%  Similarity=0.555  Sum_probs=19.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +.|+||||||||||++.|....
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999987754

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.48  E-value=0.0002  Score=55.52  Aligned_cols=43  Identities=23%  Similarity=0.335  Sum_probs=36.6

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      -++.|.++-|.||+||||||++-.++.....++...+++|.+.
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~   95 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH   95 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc
Confidence            3478899999999999999999999988767777778888764

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=3.6e-05  Score=55.80  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+.|+||+||||||+++.|+..+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36788999999999999999866

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=3.6e-05  Score=56.56  Aligned_cols=22  Identities=45%  Similarity=0.536  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +.|+||||||||||++.|....
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999988765

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=6.6e-05  Score=59.52  Aligned_cols=27  Identities=30%  Similarity=0.237  Sum_probs=24.3

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      ..-++||.|++||||||+++.|..++.
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            346999999999999999999999884

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=3.3e-05  Score=56.10  Aligned_cols=29  Identities=14%  Similarity=0.187  Sum_probs=25.6

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      -+.+|+++.|.||+||||||++-.++...
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            36899999999999999999999887654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=5.6e-05  Score=60.46  Aligned_cols=40  Identities=25%  Similarity=0.230  Sum_probs=31.8

Q ss_pred             cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC
Q 029613           19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG   58 (190)
Q Consensus        19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~   58 (190)
                      .++.+...-.+.-+++|+|++|||||||+..|...+...+
T Consensus        43 ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g   82 (327)
T d2p67a1          43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREG   82 (327)
T ss_dssp             HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcC
Confidence            4555555566788999999999999999999988775444

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.44  E-value=2.5e-05  Score=57.17  Aligned_cols=21  Identities=29%  Similarity=0.328  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      .++|+|++|+|||||++.|.|
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            499999999999999999987

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.43  E-value=3.4e-05  Score=56.67  Aligned_cols=24  Identities=33%  Similarity=0.457  Sum_probs=21.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      --+.|+||+||||||+++.|+..+
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHH
Confidence            457789999999999999999855

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=4.4e-05  Score=55.63  Aligned_cols=23  Identities=13%  Similarity=0.271  Sum_probs=20.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      ..+.|+||||+|||||++.|...
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999988764

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.40  E-value=0.00032  Score=52.45  Aligned_cols=48  Identities=19%  Similarity=0.206  Sum_probs=34.7

Q ss_pred             cccccccc-ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613           18 GRLERQKL-LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD   65 (190)
Q Consensus        18 ~~l~~~sl-~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~   65 (190)
                      +.|+++=- -+.+|.++.|.|++||||||++.-++-.....+.-.+++.
T Consensus        13 ~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is   61 (242)
T d1tf7a2          13 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFA   61 (242)
T ss_dssp             HHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             HHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceee
Confidence            34555522 2789999999999999999999888776544444445554

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.39  E-value=3.2e-05  Score=58.74  Aligned_cols=26  Identities=46%  Similarity=0.653  Sum_probs=23.4

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +|.+.+++|+||+|||||++.|.+..
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchh
Confidence            68999999999999999999997643

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.38  E-value=2.5e-05  Score=57.13  Aligned_cols=28  Identities=32%  Similarity=0.304  Sum_probs=24.3

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..++-+++|-|+.||||||+++.|...+
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4566799999999999999999988755

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=9.7e-05  Score=57.24  Aligned_cols=43  Identities=30%  Similarity=0.344  Sum_probs=37.1

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      -+.+|.++-|.||+||||||++-.++.....++...+++|.+.
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            4568899999999999999999988887777787788888764

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.35  E-value=0.00059  Score=52.83  Aligned_cols=43  Identities=26%  Similarity=0.356  Sum_probs=35.9

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      -++.|.++-|.||+||||||++-.++......+.-.+++|.+.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            5688999999999999999998777776656666678888765

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.35  E-value=5.7e-05  Score=56.84  Aligned_cols=23  Identities=43%  Similarity=0.611  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+.+.||+|+||||++++|+..+
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~   59 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASEL   59 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhcc
Confidence            47799999999999999999877

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.32  E-value=4.9e-05  Score=54.35  Aligned_cols=22  Identities=41%  Similarity=0.427  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      .++|+|++|+|||||++.|.|.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999874

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.32  E-value=0.00044  Score=52.72  Aligned_cols=26  Identities=31%  Similarity=0.341  Sum_probs=22.1

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +..-+.|.||+|||||+++++|+..+
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhcc
Confidence            33447789999999999999999976

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.31  E-value=5.7e-05  Score=56.02  Aligned_cols=21  Identities=43%  Similarity=0.491  Sum_probs=18.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVN   51 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~   51 (190)
                      .++||+|..||||||+++++.
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999763

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=7.5e-05  Score=56.46  Aligned_cols=25  Identities=36%  Similarity=0.364  Sum_probs=22.2

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ...+.|.||+|+||||++++|+..+
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            3478899999999999999999865

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.29  E-value=7.5e-05  Score=55.94  Aligned_cols=24  Identities=33%  Similarity=0.639  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      .+.|.||+|+||||++++|+..+.
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHH
Confidence            478999999999999999998763

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.29  E-value=7.4e-05  Score=56.26  Aligned_cols=23  Identities=39%  Similarity=0.566  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      -+.+.||+|+||||+++++++.+
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            46689999999999999999977

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.29  E-value=0.00013  Score=58.17  Aligned_cols=39  Identities=28%  Similarity=0.301  Sum_probs=30.1

Q ss_pred             ccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCC
Q 029613           20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRG   58 (190)
Q Consensus        20 l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~   58 (190)
                      ++.+...-.+.-+++|+|++|||||||+..|...+...+
T Consensus        41 ~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g   79 (323)
T d2qm8a1          41 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAG   79 (323)
T ss_dssp             HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             HHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcC
Confidence            444455556778899999999999999999987664333

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=9.4e-05  Score=56.32  Aligned_cols=35  Identities=26%  Similarity=0.105  Sum_probs=26.3

Q ss_pred             cccccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +-+++++.-+ +.++.|+|||.+||||++|.++-..
T Consensus        31 VpNdi~l~~~-~~~~iiTGpN~~GKSt~lk~i~l~~   65 (234)
T d1wb9a2          31 IANPLNLSPQ-RRMLIITGPNMGGKSTYMRQTALIA   65 (234)
T ss_dssp             CCEEEEECSS-SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cceeEEECCC-ceEEEEeccCchhhHHHHHHHHHHH
Confidence            4455555533 4688999999999999999986543

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00021  Score=54.97  Aligned_cols=39  Identities=23%  Similarity=0.336  Sum_probs=29.3

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      ....-+.|.||+|+|||+++++|+..+   +.-.+.++..++
T Consensus        43 ~~~~~iLL~GppGtGKT~la~~iA~~~---~~~~~~i~~~~l   81 (256)
T d1lv7a_          43 KIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDF   81 (256)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSS
T ss_pred             CCCCeEEeeCCCCCCccHHHHHHHHHc---CCCEEEEEhHHh
Confidence            344557799999999999999999876   233556666554

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=8.9e-05  Score=55.43  Aligned_cols=27  Identities=33%  Similarity=0.508  Sum_probs=25.0

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      +|.+++|-|+.||||||+++.|...+.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            699999999999999999999998773

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=7.2e-05  Score=52.62  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      |--++|+|++|+|||||++.|.|.
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456899999999999999999873

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=9.5e-05  Score=55.26  Aligned_cols=22  Identities=32%  Similarity=0.602  Sum_probs=20.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +.|.||+|+||||++++++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999999876

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=8.9e-05  Score=55.06  Aligned_cols=22  Identities=45%  Similarity=0.514  Sum_probs=19.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g   52 (190)
                      .++||+|..||||||.++++..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            4899999999999999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.22  E-value=9.1e-05  Score=51.55  Aligned_cols=21  Identities=24%  Similarity=0.602  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~   53 (190)
                      +.|+|++|+|||||++.+.+-
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            679999999999999998774

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.22  E-value=9.4e-05  Score=58.42  Aligned_cols=38  Identities=16%  Similarity=0.186  Sum_probs=28.1

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      ++.-+.++||+|+|||+|+|+|+..+.   ..-+.++...+
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~---~~~~~i~~s~~   85 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLAN---APFIKVEATKF   85 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT---CCEEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccc---cchhccccccc
Confidence            445566899999999999999999773   23455665444

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=9.7e-05  Score=54.04  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      .++|+|++|||||||++.|.+.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999874

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=8e-05  Score=53.23  Aligned_cols=21  Identities=33%  Similarity=0.316  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      +++|+|.+|+|||||++.|.|
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999987

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.19  E-value=5.9e-05  Score=54.19  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++|+|++|+|||||++.|.|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999873

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.19  E-value=2.4e-05  Score=59.65  Aligned_cols=26  Identities=35%  Similarity=0.461  Sum_probs=22.3

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +|.+.+++|+||+|||||++.|.+-.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ccceEEEECCCCccHHHHHHhhccHh
Confidence            57888999999999999999998755

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.18  E-value=0.0001  Score=51.55  Aligned_cols=21  Identities=33%  Similarity=0.702  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~   53 (190)
                      ++|+|.+|+|||||++.+.+-
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998774

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.00011  Score=51.08  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~   53 (190)
                      ++|+|++|+|||||++.+.+-
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            679999999999999998873

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.17  E-value=9.3e-05  Score=53.19  Aligned_cols=22  Identities=36%  Similarity=0.291  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      +++|+|.+|+|||||++.|+|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999874

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.16  E-value=0.00024  Score=58.95  Aligned_cols=51  Identities=18%  Similarity=0.322  Sum_probs=33.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccccccccccCCChhhHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLRHGLNKNLGFSAEDRTENIRR   90 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~~~~~~~i~~~~~~~~~~~~~   90 (190)
                      =+.++||+|||||-|+|.|++.+.-|   -+..+...+++     .||..++....++.
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~VP---Fv~~daT~fTe-----aGYvG~DVesii~~  101 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFTE-----VGYVGKEVDSIIRD  101 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGGC---------CCCCTHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCC---EEEeecceeee-----cceeecchhHHHHH
Confidence            36788999999999999999987433   45666665553     45666554444433

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=0.00013  Score=52.56  Aligned_cols=25  Identities=32%  Similarity=0.286  Sum_probs=21.6

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      ..+--++|+|++|+|||||++.|.|
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHC
Confidence            3455689999999999999999986

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.14  E-value=4.1e-05  Score=55.39  Aligned_cols=20  Identities=40%  Similarity=0.476  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++|+|++++|||||++.|.|
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            79999999999999999865

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.14  E-value=0.00015  Score=54.80  Aligned_cols=31  Identities=26%  Similarity=0.175  Sum_probs=23.8

Q ss_pred             ccccccccCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613           20 LERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        20 l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -.|+.+.   +.++.|+|||.+||||++|.++=.
T Consensus        28 pNdi~~~---~~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          28 PNDLEMA---HELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             CEEEEES---SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred             cceEEeC---CcEEEEECCCccccchhhhhhHHH
Confidence            3455443   358899999999999999988643

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.13  E-value=5.9e-05  Score=60.21  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=28.4

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD   65 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~   65 (190)
                      +.+.-+.|+|+.||||||++++|.+.+ ++..-.+.+.
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~~~i-~~~~rivtiE  200 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIMEFI-PKEERIISIE  200 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEEE
T ss_pred             HhCCCEEEEeeccccchHHHHHHhhhc-ccccceeecc
Confidence            334457899999999999999999977 5555555553

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.13  E-value=0.00026  Score=53.27  Aligned_cols=27  Identities=15%  Similarity=0.036  Sum_probs=23.7

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      ....+.|.||+|+||||+++.|+..+.
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            345788999999999999999999884

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=4.8e-05  Score=57.03  Aligned_cols=26  Identities=23%  Similarity=0.160  Sum_probs=23.3

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++.+++|-|+.||||||+++.|+..+
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            36789999999999999999998866

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.06  E-value=0.00018  Score=55.19  Aligned_cols=51  Identities=25%  Similarity=0.196  Sum_probs=37.9

Q ss_pred             CccccccccccccCCccEEEEECCCCCcHHHHHHHHHHHH-hhCCCcEEEEc
Q 029613           15 SPIGRLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL-YSRGKLSYILD   65 (190)
Q Consensus        15 ~~~~~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l-~~~~~g~i~~~   65 (190)
                      .+.+.|+++..-+.+|+++.|.|++|+||||++.-++--+ ...+....++.
T Consensus        20 TG~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s   71 (277)
T d1cr2a_          20 SGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM   71 (277)
T ss_dssp             CSCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             CCchhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEee
Confidence            4456777776668999999999999999999998887543 23444444544

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.05  E-value=6.4e-05  Score=53.56  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=19.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|++|||||||++.+.+-
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35779999999999999998664

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.05  E-value=0.0002  Score=51.22  Aligned_cols=30  Identities=30%  Similarity=0.503  Sum_probs=27.0

Q ss_pred             cccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           25 LLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ...++|.++.|.|+=||||||+.|.++.-+
T Consensus        28 ~~~~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ccCCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            345799999999999999999999998876

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.05  E-value=0.00022  Score=55.79  Aligned_cols=27  Identities=26%  Similarity=0.444  Sum_probs=23.1

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +..-++||.|+.|||||||++.|...+
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHH
Confidence            345699999999999999999887666

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.04  E-value=6.6e-05  Score=54.08  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~   53 (190)
                      ++|+|.+++|||||++.|+|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999763

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00012  Score=54.37  Aligned_cols=26  Identities=23%  Similarity=0.321  Sum_probs=23.4

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      +.+|.++.|.|++||||||++--++-
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999999987653

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00019  Score=53.45  Aligned_cols=23  Identities=35%  Similarity=0.601  Sum_probs=20.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHHh
Q 029613           33 VWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      +.|.||+|+||||++++++..+.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHHh
Confidence            66899999999999999998763

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00024  Score=53.16  Aligned_cols=28  Identities=14%  Similarity=0.061  Sum_probs=25.2

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -+.+|.++.|.|++||||||++-.++..
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999888754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.92  E-value=0.00018  Score=51.87  Aligned_cols=20  Identities=30%  Similarity=0.343  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++|+|+++||||||++.|.+
T Consensus         8 IaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            89999999999999999986

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.90  E-value=7.2e-05  Score=52.56  Aligned_cols=21  Identities=38%  Similarity=0.390  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~   53 (190)
                      ++|+|.+++|||||++.|.|.
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999985

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.90  E-value=0.00052  Score=56.01  Aligned_cols=37  Identities=30%  Similarity=0.390  Sum_probs=28.8

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL   64 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~   64 (190)
                      .++-++.+.||.||||||++..+...+..+....+.+
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~ti  192 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV  192 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEe
Confidence            5677899999999999999999998775444433444

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.00029  Score=52.36  Aligned_cols=23  Identities=26%  Similarity=0.628  Sum_probs=20.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHHHh
Q 029613           33 VWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      +.|.||+|+||||++++++..+.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            66899999999999999998764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.00026  Score=51.89  Aligned_cols=22  Identities=32%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++|+|++|+|||||++.+.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998773

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.88  E-value=0.00018  Score=50.74  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++|+|++|||||||++.|.+.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            3789999999999999998763

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.88  E-value=0.0049  Score=47.29  Aligned_cols=26  Identities=27%  Similarity=0.434  Sum_probs=22.3

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      +...+++|.|..|.|||||++.+...
T Consensus        42 ~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          42 LDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            34679999999999999999998654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.87  E-value=0.00031  Score=54.15  Aligned_cols=28  Identities=29%  Similarity=0.294  Sum_probs=23.6

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +....-+.|.||+|+|||++++++++.+
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence            3445557899999999999999999966

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.86  E-value=0.00035  Score=52.59  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=22.8

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+.++.|.||+|+|||||++.++..+
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            56789999999999999999887654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.86  E-value=0.00039  Score=51.24  Aligned_cols=36  Identities=19%  Similarity=0.234  Sum_probs=27.7

Q ss_pred             cccccccccc-ccCCccEEEEECCCCCcHHHHHHHHH
Q 029613           16 PIGRLERQKL-LNQKGCVVWITGLSGSGKSTLAFSVN   51 (190)
Q Consensus        16 ~~~~l~~~sl-~i~~Geii~L~G~nGsGKSTLlr~l~   51 (190)
                      +.+-|+++-- -+++|+++.|.|++|+|||||+.-++
T Consensus        11 Gi~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          11 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            3445555443 47899999999999999999986544

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.86  E-value=0.00025  Score=53.07  Aligned_cols=26  Identities=27%  Similarity=0.346  Sum_probs=23.4

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      +.+|.++.|.|++||||||++--++-
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            68999999999999999999886654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.86  E-value=0.00021  Score=54.10  Aligned_cols=24  Identities=33%  Similarity=0.268  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      ++.|.||+|+||||+++.++..+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            456679999999999999998773

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.85  E-value=0.00041  Score=52.96  Aligned_cols=35  Identities=29%  Similarity=0.277  Sum_probs=26.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      .-+.|.||+|+|||+++++|+..+   +.-.+.++..+
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~   77 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSD   77 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHHc---CCCEEEEEhHH
Confidence            347899999999999999999865   33445555433

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.00027  Score=53.12  Aligned_cols=23  Identities=22%  Similarity=0.534  Sum_probs=20.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHHh
Q 029613           33 VWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      +.|.||+|+||||++++++..+.
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhhc
Confidence            67999999999999999998763

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=7.9e-05  Score=53.23  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=20.3

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      .--++|+|++++|||||++.|.+
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            44589999999999999999866

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.83  E-value=0.00028  Score=52.30  Aligned_cols=28  Identities=25%  Similarity=0.322  Sum_probs=25.3

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +.+|+++.|.|++|+||||++--++-..
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999999887644

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.82  E-value=0.00056  Score=55.16  Aligned_cols=30  Identities=27%  Similarity=0.114  Sum_probs=26.8

Q ss_pred             cccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           25 LLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      -.+.++.++.+.||+|+||||++++|++.+
T Consensus       149 ~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         149 YNIPKKRYWLFKGPIDSGKTTLAAALLELC  178 (362)
T ss_dssp             HCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCCcCeEEEECCCCCCHHHHHHHHHHHc
Confidence            355778899999999999999999999977

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.79  E-value=0.00026  Score=50.21  Aligned_cols=25  Identities=28%  Similarity=0.499  Sum_probs=21.3

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++.--+.|+|.+|||||||++.|.+
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc
Confidence            4445688999999999999998876

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.78  E-value=0.00047  Score=52.84  Aligned_cols=32  Identities=25%  Similarity=0.427  Sum_probs=24.5

Q ss_pred             cccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++......+|  +.|.||+|+|||+++++++..+
T Consensus        31 ~~~g~~~~~g--iLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          31 KAIGVKPPRG--ILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             HHCCCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HhCCCCCCce--eEEecCCCCCchHHHHHHHHHh
Confidence            3334444444  7799999999999999999855

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.76  E-value=0.00042  Score=51.97  Aligned_cols=34  Identities=18%  Similarity=0.250  Sum_probs=25.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc-Cccc
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD-GDNL   69 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~-g~~~   69 (190)
                      .++||+|.-||||||+++.|...     .|...++ ++.+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~-----~g~~~i~~aD~i   36 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN-----YSAVKYQLAGPI   36 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH-----SCEEECCTTHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh-----CCCeEEcccHHH
Confidence            37999999999999999998653     2455665 4433

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.75  E-value=0.00042  Score=48.90  Aligned_cols=21  Identities=29%  Similarity=0.382  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~   53 (190)
                      ++++|++|+|||||++.+.+-
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            678999999999999988663

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.74  E-value=0.00044  Score=51.88  Aligned_cols=24  Identities=25%  Similarity=0.261  Sum_probs=21.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      -+++|+|+.+||||||++.|.+.-
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhc
Confidence            359999999999999999998754

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.72  E-value=0.0003  Score=53.92  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --++|+|.+|+|||||++.|.|.
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCcHHHHHHHHhCC
Confidence            46889999999999999999984

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.65  E-value=0.00054  Score=48.63  Aligned_cols=20  Identities=40%  Similarity=0.468  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++|+|++|+|||||++.+.+
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            68999999999999998875

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.60  E-value=0.00061  Score=48.32  Aligned_cols=20  Identities=30%  Similarity=0.509  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++++|.+|+|||||++.+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998865

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00073  Score=48.15  Aligned_cols=20  Identities=40%  Similarity=0.484  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++++|++|+|||||++.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998765

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00071  Score=47.74  Aligned_cols=21  Identities=29%  Similarity=0.491  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -++++|.+|+|||||++.+.+
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999998776

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.0008  Score=47.35  Aligned_cols=20  Identities=25%  Similarity=0.312  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++++|.+|+|||||++.+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999987664

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.00077  Score=50.32  Aligned_cols=24  Identities=29%  Similarity=0.225  Sum_probs=22.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+++|-|.-||||||+++.|...+
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHH
Confidence            578999999999999999999876

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.45  E-value=0.00041  Score=54.81  Aligned_cols=24  Identities=33%  Similarity=0.313  Sum_probs=21.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      --+.|.|++|+||||++|.+.++|
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CeEEEECCCCccHHHHHHHHHHhC
Confidence            357889999999999999999988

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.42  E-value=0.0017  Score=48.26  Aligned_cols=35  Identities=29%  Similarity=0.407  Sum_probs=28.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613           33 VWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      +.|.||+|+|||-|+.+++..+...+...+++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~   73 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD   73 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechH
Confidence            78999999999999999998876566666666543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00095  Score=47.43  Aligned_cols=20  Identities=35%  Similarity=0.464  Sum_probs=17.8

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      +.++|++|+|||||++.+.+
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            67999999999999998764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.41  E-value=0.00084  Score=47.27  Aligned_cols=20  Identities=35%  Similarity=0.473  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++++|.+|+|||||++.+++
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999998765

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.37  E-value=0.0015  Score=51.67  Aligned_cols=38  Identities=21%  Similarity=0.221  Sum_probs=27.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcccc
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNLR   70 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~~   70 (190)
                      ++.++||+|+|||.|++.|++.+ .....-+.+++.++.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~-~~~~~~~~~~~~~~~  162 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEAL-GGKDKYATVRFGEPL  162 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHH-HTTSCCEEEEBSCSS
T ss_pred             eEEEECCCCccHHHHHHHHHHHh-cCCCCeEEEEhhHhh
Confidence            45567999999999999999987 222233456665543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.0013  Score=51.79  Aligned_cols=35  Identities=20%  Similarity=0.184  Sum_probs=27.0

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG   66 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g   66 (190)
                      +...+.++||+|+|||.|++.|+..+.   ..-+.++.
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~l~---~~~i~~d~   85 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKALG---IELLRFDM   85 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHT---CEEEEEEG
T ss_pred             CceEEEEECCCcchhHHHHHHHHhhcc---CCeeEecc
Confidence            445788999999999999999999873   23455553

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.00094  Score=47.30  Aligned_cols=21  Identities=24%  Similarity=0.396  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -+.|+|.+|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998876

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.00099  Score=47.17  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -+.|+|.+|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            588999999999999997765

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.32  E-value=0.0011  Score=47.42  Aligned_cols=20  Identities=40%  Similarity=0.424  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++++|.+|+|||||++.+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998765

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.32  E-value=0.0013  Score=46.45  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=19.5

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      ---++++|++|+|||||++.+.+
T Consensus        16 ~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          16 EVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHhc
Confidence            34588999999999999998755

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.32  E-value=0.0013  Score=47.57  Aligned_cols=23  Identities=48%  Similarity=0.495  Sum_probs=19.1

Q ss_pred             CccEEEEECCCCCcHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVN   51 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~   51 (190)
                      .|.-+.|.|+||+||||++-.+.
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHH
Confidence            46778899999999999986543

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0012  Score=46.53  Aligned_cols=22  Identities=32%  Similarity=0.397  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -+.|+|.+|+|||||++.+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988763

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.31  E-value=0.00076  Score=54.98  Aligned_cols=21  Identities=38%  Similarity=0.499  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -++|+|.+|+|||||++.|.|
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999988

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0011  Score=46.79  Aligned_cols=21  Identities=29%  Similarity=0.393  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -++|+|.+|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998765

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.29  E-value=0.0011  Score=48.08  Aligned_cols=29  Identities=38%  Similarity=0.361  Sum_probs=22.0

Q ss_pred             cccccccCCccEEEEECCCCCcHHHHHHHH
Q 029613           21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSV   50 (190)
Q Consensus        21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l   50 (190)
                      +.-.+.+ .|.-+.|.|+||+||||++-.+
T Consensus         7 H~~~v~~-~g~gvli~G~sG~GKS~lal~l   35 (177)
T d1knxa2           7 HGVLLEV-FGVGVLLTGRSGIGKSECALDL   35 (177)
T ss_dssp             EEEEEEE-TTEEEEEEESSSSSHHHHHHHH
T ss_pred             EEEEEEE-CCEEEEEEcCCCCCHHHHHHHH
Confidence            3333344 6778899999999999998664

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.29  E-value=0.0023  Score=50.36  Aligned_cols=42  Identities=19%  Similarity=0.237  Sum_probs=31.1

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCccc
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDNL   69 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~~   69 (190)
                      +|.-++.++||+|+|||.+++.|+..+......-+.++...+
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~   92 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY   92 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred             CCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecccc
Confidence            344467788999999999999999988544445566765443

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0012  Score=47.38  Aligned_cols=20  Identities=30%  Similarity=0.481  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      +.|+|++|+|||||++.+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999987754

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.001  Score=46.95  Aligned_cols=21  Identities=38%  Similarity=0.487  Sum_probs=18.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -++|+|.+|+|||||++.+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            368999999999999987764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0013  Score=46.28  Aligned_cols=20  Identities=35%  Similarity=0.393  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      +.|+|.+|+|||||++.+.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999988765

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.24  E-value=0.0014  Score=45.96  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      +.++|..|+|||||++.+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998765

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0012  Score=46.31  Aligned_cols=21  Identities=19%  Similarity=0.161  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -++|+|.+|+|||||++.+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998865

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=96.23  E-value=0.002  Score=52.18  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=26.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILD   65 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~   65 (190)
                      ..+.|+|++|||||++++.+.-.+...+.+.+.+|
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD   85 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD   85 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence            45899999999999999765544435566666665

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0014  Score=46.11  Aligned_cols=20  Identities=30%  Similarity=0.529  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++|+|.+|+|||||++.+..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998765

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0012  Score=46.76  Aligned_cols=22  Identities=36%  Similarity=0.370  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++|+|.+|+|||||++.+.+.-
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            6899999999999999987643

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0014  Score=49.75  Aligned_cols=28  Identities=29%  Similarity=0.395  Sum_probs=24.5

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +.+|+++.|.|++|+|||||+-.|+-.+
T Consensus        26 ~~pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          26 MVAGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3469999999999999999998887655

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0016  Score=45.91  Aligned_cols=20  Identities=25%  Similarity=0.343  Sum_probs=17.9

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      +.|+|.+|+|||||++.+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998765

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0016  Score=46.29  Aligned_cols=20  Identities=40%  Similarity=0.611  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      +.++|..|+|||||++.+.+
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0017  Score=46.04  Aligned_cols=20  Identities=35%  Similarity=0.368  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      +.++|.+|+|||||++.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999977654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0015  Score=46.32  Aligned_cols=20  Identities=30%  Similarity=0.461  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++++|.+|+|||||++.+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998765

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0015  Score=47.38  Aligned_cols=20  Identities=35%  Similarity=0.539  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999998765

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.08  E-value=0.00092  Score=47.81  Aligned_cols=25  Identities=32%  Similarity=0.590  Sum_probs=19.9

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++---+.++|++|+|||||++.+.+
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc
Confidence            3344578999999999999998754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0016  Score=46.28  Aligned_cols=21  Identities=29%  Similarity=0.398  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~   53 (190)
                      +.|+|.+|+|||||++.+.+-
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999887653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.0026  Score=49.58  Aligned_cols=30  Identities=17%  Similarity=0.162  Sum_probs=27.1

Q ss_pred             cccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           25 LLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +-+-+|+-.+|+|++|+|||||+..|+...
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            556899999999999999999999998765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0018  Score=45.99  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -+.|+|.+|+|||||++.+.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.002  Score=45.42  Aligned_cols=20  Identities=35%  Similarity=0.416  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      +.++|.+|+|||||++.+.+
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            67999999999999998876

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.002  Score=45.44  Aligned_cols=21  Identities=33%  Similarity=0.398  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -+.++|.+|+|||||++.+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            468999999999999998774

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.01  E-value=0.0023  Score=49.78  Aligned_cols=24  Identities=29%  Similarity=0.355  Sum_probs=21.3

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHH
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      +--+||+|.+.+|||||+++|++.
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCC
Confidence            345999999999999999999974

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.0021  Score=45.30  Aligned_cols=20  Identities=20%  Similarity=0.356  Sum_probs=17.8

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++++|.+|+|||||++.+.+
T Consensus         6 i~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999997765

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.0022  Score=48.07  Aligned_cols=25  Identities=28%  Similarity=0.393  Sum_probs=21.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      ..+.|.||+|+||||++++++..+.
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHHHhc
Confidence            3467889999999999999998874

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.97  E-value=0.0021  Score=46.24  Aligned_cols=24  Identities=46%  Similarity=0.455  Sum_probs=19.6

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVN   51 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~   51 (190)
                      -.|.-+.|.|++|+||||++-.+.
T Consensus        13 ~~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHH
Confidence            457788999999999999986543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.0025  Score=46.97  Aligned_cols=25  Identities=24%  Similarity=0.512  Sum_probs=22.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      ..+.+.||+|+||||+++.++..+.
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhcc
Confidence            3578899999999999999999874

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0022  Score=45.20  Aligned_cols=20  Identities=35%  Similarity=0.509  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++|+|++|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999997755

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0022  Score=45.80  Aligned_cols=21  Identities=24%  Similarity=0.281  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -+.|+|.+|+|||||++.+.+
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999987765

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0018  Score=45.92  Aligned_cols=22  Identities=41%  Similarity=0.356  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -+.|+|.+|+|||||++.+.+.
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988763

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0018  Score=48.33  Aligned_cols=21  Identities=38%  Similarity=0.577  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++.|.|.=|||||||++-+..
T Consensus         5 v~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHH
T ss_pred             EEEEeeCCCCCHHHHHHHHHh
Confidence            678999999999999887755

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.88  E-value=0.0026  Score=44.96  Aligned_cols=21  Identities=29%  Similarity=0.415  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -+.++|.+|+|||||++.+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            467899999999999998765

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.85  E-value=0.0013  Score=46.56  Aligned_cols=22  Identities=23%  Similarity=0.523  Sum_probs=18.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g   52 (190)
                      --+.++|++|+|||||++.+.+
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3577999999999999998753

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.84  E-value=0.0025  Score=49.08  Aligned_cols=23  Identities=39%  Similarity=0.401  Sum_probs=20.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      --+||+|.+.+|||||+++|++.
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHCC
Confidence            35899999999999999999863

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.84  E-value=0.0021  Score=46.65  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~   53 (190)
                      ++|+|.-.||||||++.|.|.
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~   28 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGV   28 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEeccCCcHHHHHHHHHhh
Confidence            689999999999999999874

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.83  E-value=0.0013  Score=46.59  Aligned_cols=20  Identities=30%  Similarity=0.569  Sum_probs=8.4

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      +.|+|..|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999986664

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.82  E-value=0.0033  Score=46.56  Aligned_cols=29  Identities=21%  Similarity=0.088  Sum_probs=21.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCc
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKL   60 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g   60 (190)
                      -+.|+|.+|+|||||++-+..--..|+-|
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            46899999999999999875433345444

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.82  E-value=0.0028  Score=44.75  Aligned_cols=21  Identities=33%  Similarity=0.447  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -+.|+|.+|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998764

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.79  E-value=0.0017  Score=50.75  Aligned_cols=21  Identities=24%  Similarity=0.249  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~   53 (190)
                      +||+|.+.+|||||+++|.|.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            799999999999999999874

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.78  E-value=0.0025  Score=45.78  Aligned_cols=28  Identities=25%  Similarity=0.224  Sum_probs=21.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHh--hCCCc
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELY--SRGKL   60 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~--~~~~g   60 (190)
                      -+.|+|.+|+|||||++.+. ...  .|+.|
T Consensus         4 KivllG~~~vGKTsll~r~~-f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR-IIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-HHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHh-cCCCCCCeee
Confidence            36799999999999999984 342  45556

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0031  Score=44.29  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -+.++|.+|+|||||++.+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999998765

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.70  E-value=0.0036  Score=46.03  Aligned_cols=22  Identities=27%  Similarity=0.246  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++++|+.+||||||+..|....
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHh
Confidence            7899999999999999996543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0036  Score=44.69  Aligned_cols=21  Identities=29%  Similarity=0.257  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -++++|.+|+|||||++.+.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999997765

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0014  Score=46.44  Aligned_cols=21  Identities=24%  Similarity=0.302  Sum_probs=17.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -++++|.+|+|||||++.+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=95.62  E-value=0.0052  Score=44.92  Aligned_cols=22  Identities=36%  Similarity=0.412  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++++|+-++|||||+..|.+.+
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHH
Confidence            7899999999999999998865

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0032  Score=45.08  Aligned_cols=20  Identities=25%  Similarity=0.332  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      +.|+|.+|+|||||++.+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            68999999999999987654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.51  E-value=0.0037  Score=44.62  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=17.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -+.++|.+|+|||||++.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            367999999999999986654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0038  Score=44.89  Aligned_cols=20  Identities=25%  Similarity=0.323  Sum_probs=17.5

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++|+|.+|+|||||++.+.+
T Consensus         6 vvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999877654

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=95.40  E-value=0.0072  Score=40.29  Aligned_cols=28  Identities=21%  Similarity=0.161  Sum_probs=21.3

Q ss_pred             cCCccEEEEECCCCCcHHHHH-HHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLA-FSVNKEL   54 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLl-r~l~g~l   54 (190)
                      +++|+.+.|.+|.|||||+.+ ..+....
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~   32 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC   32 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred             HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence            578999999999999999655 3444434

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.37  E-value=0.0067  Score=48.08  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=24.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL   64 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~   64 (190)
                      .|.|-|+-||||||+++.|...+ ......+++
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l-~~~~~v~~~   39 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAA-SGGSPTLYF   39 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGG-GCSSCEEEE
T ss_pred             EEEEECCccCCHHHHHHHHHHHh-ccCCCeEEE
Confidence            46778999999999999999877 444444444

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.29  E-value=0.0052  Score=49.29  Aligned_cols=28  Identities=32%  Similarity=0.461  Sum_probs=22.2

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ...++. +.++||+|+|||-|+|.|+..+
T Consensus        65 ~~p~~n-iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          65 ELSKSN-ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             TCCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence            334555 4566999999999999999865

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.19  E-value=0.005  Score=48.78  Aligned_cols=33  Identities=18%  Similarity=0.247  Sum_probs=25.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL   64 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~   64 (190)
                      .|.|-|+-||||||+++.|...+...+...+++
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~   39 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLI   39 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEE
Confidence            478889999999999999998774334444444

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.14  E-value=0.0065  Score=48.29  Aligned_cols=27  Identities=26%  Similarity=0.279  Sum_probs=22.6

Q ss_pred             cccCCccEEEEECCCCCcHHHHHHHHH
Q 029613           25 LLNQKGCVVWITGLSGSGKSTLAFSVN   51 (190)
Q Consensus        25 l~i~~Geii~L~G~nGsGKSTLlr~l~   51 (190)
                      +.+..+.+.+|+|+|||||||++.+|+
T Consensus        20 i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          20 VGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            334556689999999999999999995

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.14  E-value=0.013  Score=45.16  Aligned_cols=30  Identities=23%  Similarity=0.317  Sum_probs=25.9

Q ss_pred             cccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           25 LLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +.+-+|+-.+|+|++|+|||||+..++.-.
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            456799999999999999999988887654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.13  E-value=0.0051  Score=47.28  Aligned_cols=20  Identities=40%  Similarity=0.493  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++|+|+.|||||||+.+|..
T Consensus         5 v~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           5 VALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHH
Confidence            78999999999999999854

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0041  Score=48.06  Aligned_cols=26  Identities=35%  Similarity=0.286  Sum_probs=22.3

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +=.+++|+||-++|||||++.|.|..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCC
Confidence            33588999999999999999998743

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.99  E-value=0.015  Score=40.94  Aligned_cols=28  Identities=25%  Similarity=0.240  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCc
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKL   60 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g   60 (190)
                      -+.|+|..|+|||||++-+..-- .++.|
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~-~~t~~   31 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIH-EAGTG   31 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-SCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhhCC-CCCcc
Confidence            36899999999999999876533 34444

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.98  E-value=0.0067  Score=43.13  Aligned_cols=22  Identities=27%  Similarity=0.267  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +.++|..|+|||||++.+..--
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6789999999999999886543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.93  E-value=0.0064  Score=46.96  Aligned_cols=20  Identities=20%  Similarity=0.145  Sum_probs=18.1

Q ss_pred             EEEEECCCCCcHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVN   51 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~   51 (190)
                      -++|+|+.|||||||+-.|.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            37999999999999999885

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.01  Score=47.36  Aligned_cols=26  Identities=27%  Similarity=0.327  Sum_probs=20.2

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .+.++.|.|++|+||||++..+...+
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l~~l  187 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLLAAL  187 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHHHHHHH
Confidence            36799999999999999886554333

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.78  E-value=0.0068  Score=44.21  Aligned_cols=25  Identities=20%  Similarity=0.247  Sum_probs=21.0

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      |.=-++|+|.-.||||||+..|.+.
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~   31 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGI   31 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSC
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhh
Confidence            3335899999999999999999763

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.011  Score=43.25  Aligned_cols=26  Identities=15%  Similarity=0.249  Sum_probs=22.3

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      ..=+.|+|++|.|||+++..|+..+.
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHHHH
Confidence            34567999999999999999998773

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.01  Score=45.51  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=21.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      .=+.|+|++|.|||+++..++..+.
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHH
Confidence            4466999999999999999998774

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.74  E-value=0.012  Score=45.15  Aligned_cols=29  Identities=21%  Similarity=0.429  Sum_probs=25.6

Q ss_pred             ccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           26 LNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        26 ~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ...+.-+++|.||.++||||++.+|...+
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            44667799999999999999999999976

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.50  E-value=0.013  Score=43.03  Aligned_cols=34  Identities=18%  Similarity=0.106  Sum_probs=28.0

Q ss_pred             cccccccCCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           21 ERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        21 ~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .++--.+.+.-+++|.||+++|||+++.+|+..+
T Consensus        44 ~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          44 KSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             HHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHcCCCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            3333345777899999999999999999999987

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.0099  Score=46.55  Aligned_cols=20  Identities=55%  Similarity=0.797  Sum_probs=17.7

Q ss_pred             CCccEEEEECCCCCcHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLA   47 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLl   47 (190)
                      +.|++..+.|.||+|||||.
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46889999999999999974

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.40  E-value=0.0086  Score=46.24  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      -++++|.-.||||||+++|.|.
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTS
T ss_pred             eEEEEeCCCCCHHHHHHHHhCC
Confidence            3689999999999999999994

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=94.29  E-value=0.016  Score=50.14  Aligned_cols=27  Identities=33%  Similarity=0.410  Sum_probs=24.4

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++.+.+.|.|+||||||+-.|.|...+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999998766

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.25  E-value=0.013  Score=44.19  Aligned_cols=48  Identities=31%  Similarity=0.293  Sum_probs=32.0

Q ss_pred             cccccccccCCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcC
Q 029613           19 RLERQKLLNQKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDG   66 (190)
Q Consensus        19 ~l~~~sl~i~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g   66 (190)
                      .++.+.--...+.-+.|.|+.|+||++++++|-..-.......+.++-
T Consensus        12 ~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~   59 (247)
T d1ny5a2          12 ILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNV   59 (247)
T ss_dssp             HHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEET
T ss_pred             HHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchh
Confidence            344555555666778999999999999999997643222333344443

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.23  E-value=0.0084  Score=45.63  Aligned_cols=22  Identities=18%  Similarity=0.299  Sum_probs=15.8

Q ss_pred             EEEECCCCCcHHHHH-HHHHHHH
Q 029613           33 VWITGLSGSGKSTLA-FSVNKEL   54 (190)
Q Consensus        33 i~L~G~nGsGKSTLl-r~l~g~l   54 (190)
                      +.|+|++||||||++ ..+.-++
T Consensus        17 ~lI~g~aGTGKTt~l~~rv~~ll   39 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKIAHLI   39 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHHHHHHH
Confidence            568899999999754 4444444

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=94.21  E-value=0.011  Score=46.49  Aligned_cols=20  Identities=50%  Similarity=0.760  Sum_probs=17.5

Q ss_pred             CCccEEEEECCCCCcHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLA   47 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLl   47 (190)
                      +.|++..+.|.||+|||||.
T Consensus        12 ~~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          12 KEGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TTCCEEEEEECTTSCHHHHT
T ss_pred             CCCCEEEEEccCCCCccccc
Confidence            35889999999999999974

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.21  E-value=0.0093  Score=45.79  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~   53 (190)
                      ++++|.-.||||||+++|.|.
T Consensus        29 ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTS
T ss_pred             EEEEcCCCCCHHHHHHHHhCC
Confidence            678899999999999999994

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.18  E-value=0.017  Score=50.14  Aligned_cols=27  Identities=33%  Similarity=0.375  Sum_probs=24.7

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ++.+.+.|.|+||||||+..|.|...+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            567999999999999999999998877

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.15  E-value=0.021  Score=41.53  Aligned_cols=27  Identities=15%  Similarity=0.167  Sum_probs=23.5

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      .+.-+.+.||+|+||||+++.++..+.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            456788999999999999999998774

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.11  E-value=0.013  Score=46.07  Aligned_cols=20  Identities=50%  Similarity=0.763  Sum_probs=18.0

Q ss_pred             CCccEEEEECCCCCcHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLA   47 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLl   47 (190)
                      +.|.+..+.|.||+|||||.
T Consensus        12 ~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46888899999999999996

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=94.05  E-value=0.019  Score=49.85  Aligned_cols=27  Identities=30%  Similarity=0.321  Sum_probs=24.5

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      +..+.+.|.|.||||||+-.|.|...+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            567999999999999999999998876

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.03  E-value=0.01  Score=45.59  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=16.0

Q ss_pred             EEEEECCCCCcHHHHH-HHHHHHH
Q 029613           32 VVWITGLSGSGKSTLA-FSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLl-r~l~g~l   54 (190)
                      .+.|.|+.||||||.+ ..++.++
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHHH
Confidence            3668899999999765 3344444

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.02  E-value=0.035  Score=39.72  Aligned_cols=35  Identities=14%  Similarity=0.134  Sum_probs=29.5

Q ss_pred             cEEEEECCC-CCcHHHHHHHHHHHHhhCCCcEEEEc
Q 029613           31 CVVWITGLS-GSGKSTLAFSVNKELYSRGKLSYILD   65 (190)
Q Consensus        31 eii~L~G~n-GsGKSTLlr~l~g~l~~~~~g~i~~~   65 (190)
                      ..+.|+|-+ |.||||+.-.|+..+...|.-...++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            357899997 99999999999998877777777776

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=93.88  E-value=0.018  Score=43.78  Aligned_cols=28  Identities=21%  Similarity=0.262  Sum_probs=21.6

Q ss_pred             cCCccEEEEECCCCCcHHH--HHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKST--LAFSVNKEL   54 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKST--Llr~l~g~l   54 (190)
                      +++|+.+.|.+|.|||||+  +..++...+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~   35 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAI   35 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5689999999999999996  335555444

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.79  E-value=0.048  Score=39.56  Aligned_cols=38  Identities=34%  Similarity=0.601  Sum_probs=30.9

Q ss_pred             ccEEEEE-CCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613           30 GCVVWIT-GLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus        30 Geii~L~-G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      |.++++. +.-|+||||+.--|+..+...|.-...+|-+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D   40 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD   40 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            5788888 7789999999999999886666666777643

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.73  E-value=0.016  Score=45.76  Aligned_cols=23  Identities=30%  Similarity=0.280  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      .|.|-|+-||||||+++.|...+
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC--
T ss_pred             EEEEECCcCCCHHHHHHHHHHHh
Confidence            37788999999999999998765

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=93.58  E-value=0.023  Score=42.17  Aligned_cols=20  Identities=30%  Similarity=0.222  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++++|+-.+|||||+..|..
T Consensus        12 i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            58899999999999999865

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.57  E-value=0.024  Score=49.83  Aligned_cols=28  Identities=29%  Similarity=0.322  Sum_probs=24.8

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      ...+.+.|.|+||||||+-.|.|...+.
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999988773

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.48  E-value=0.019  Score=42.36  Aligned_cols=20  Identities=30%  Similarity=0.280  Sum_probs=17.9

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++++|+-++|||||+..|..
T Consensus         6 i~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHHH
Confidence            78999999999999988753

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=93.47  E-value=0.025  Score=49.60  Aligned_cols=28  Identities=32%  Similarity=0.277  Sum_probs=24.8

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHh
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELY   55 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~   55 (190)
                      ...+++.|.|+||||||.-.|.|...+.
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4679999999999999999999988773

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=93.29  E-value=0.067  Score=36.62  Aligned_cols=34  Identities=21%  Similarity=0.242  Sum_probs=24.7

Q ss_pred             ccEEEEECCCCCcHHH-HHHHHHHHHhhCCCcEEEE
Q 029613           30 GCVVWITGLSGSGKST-LAFSVNKELYSRGKLSYIL   64 (190)
Q Consensus        30 Geii~L~G~nGsGKST-Llr~l~g~l~~~~~g~i~~   64 (190)
                      |.+..++||=.||||| |++.+.... ..+.-.+.+
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~-~~~~kv~~i   36 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLE-YADVKYLVF   36 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHH-HCCCcEEEE
Confidence            7888999999999999 777765543 445444444

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=93.14  E-value=0.033  Score=48.38  Aligned_cols=27  Identities=22%  Similarity=0.339  Sum_probs=24.7

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ...+.+.|.|+||||||+-.|.+...+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999998877

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.64  E-value=0.028  Score=37.67  Aligned_cols=22  Identities=36%  Similarity=0.285  Sum_probs=17.1

Q ss_pred             CCccEEEEECCCCCcHHHHHHH
Q 029613           28 QKGCVVWITGLSGSGKSTLAFS   49 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~   49 (190)
                      +..++..|.+|.|||||+++-.
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~   27 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPA   27 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHH
T ss_pred             cCCCEEEEEeCCCCCHHHHHHH
Confidence            3456778899999999998643

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=92.37  E-value=0.036  Score=42.52  Aligned_cols=28  Identities=21%  Similarity=0.194  Sum_probs=24.0

Q ss_pred             ccccCCccEEEEECCCCCcHHHHHHHHH
Q 029613           24 KLLNQKGCVVWITGLSGSGKSTLAFSVN   51 (190)
Q Consensus        24 sl~i~~Geii~L~G~nGsGKSTLlr~l~   51 (190)
                      =+.+-+|+.++|+|++|+|||+|+..+.
T Consensus        61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~   88 (276)
T d1fx0a3          61 MIPVGRGQRELIIGDRQTGKTAVATDTI   88 (276)
T ss_dssp             TSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred             cccccCCceEeeccCCCCChHHHHHHHH
Confidence            3566799999999999999999998654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.36  E-value=0.036  Score=41.52  Aligned_cols=20  Identities=35%  Similarity=0.245  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++++|+-+||||||+..|.-
T Consensus         9 i~iiGHvD~GKsTl~~~ll~   28 (239)
T d1f60a3           9 VVVIGHVDSGKSTTTGHLIY   28 (239)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            68999999999999988853

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=91.98  E-value=0.044  Score=41.61  Aligned_cols=25  Identities=32%  Similarity=0.433  Sum_probs=21.5

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      .+-.++++|.+.+|||||++.|.|.
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CceEEEEEecCccchhhhhhhhhcc
Confidence            3455899999999999999999873

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.97  E-value=0.15  Score=38.13  Aligned_cols=40  Identities=23%  Similarity=0.385  Sum_probs=31.9

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      +...++.+.|.=|.||||+.-.|+-.+...|.-+..++-+
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            3456778899999999999999999886666666677655

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.95  E-value=0.037  Score=42.68  Aligned_cols=29  Identities=21%  Similarity=0.195  Sum_probs=24.6

Q ss_pred             ccccCCccEEEEECCCCCcHHHHHHHHHH
Q 029613           24 KLLNQKGCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        24 sl~i~~Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      -+.+-+|+.++|+|++|+|||+++..+..
T Consensus        62 l~pig~GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          62 LVPIGRGQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             HSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred             ccCccCCCEEEeecCCCCChHHHHHHHHH
Confidence            45678999999999999999999876554

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.92  E-value=0.12  Score=37.20  Aligned_cols=36  Identities=28%  Similarity=0.449  Sum_probs=28.6

Q ss_pred             EEEEE-CCCCCcHHHHHHHHHHHHhhCCCcEEEEcCc
Q 029613           32 VVWIT-GLSGSGKSTLAFSVNKELYSRGKLSYILDGD   67 (190)
Q Consensus        32 ii~L~-G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~   67 (190)
                      +++++ |.-|+||||++-.|+..+...+.-...+|-+
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D   39 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDAD   39 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            55666 8889999999999999886666666677654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.63  E-value=0.035  Score=41.68  Aligned_cols=19  Identities=32%  Similarity=0.363  Sum_probs=17.5

Q ss_pred             EEEECCCCCcHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVN   51 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~   51 (190)
                      ++++|+-++|||||+..|.
T Consensus        27 i~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHH
Confidence            7999999999999999884

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.56  E-value=0.061  Score=39.55  Aligned_cols=26  Identities=15%  Similarity=0.201  Sum_probs=20.0

Q ss_pred             cCCccEEEEECCCCCcHHHHHHHHHH
Q 029613           27 NQKGCVVWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        27 i~~Geii~L~G~nGsGKSTLlr~l~g   52 (190)
                      +-.|+-+.+++|.|+|||+.+-+.+-
T Consensus        55 ~l~g~~~~i~apTGsGKT~~~~~~~~   80 (237)
T d1gkub1          55 ILRKESFAATAPTGVGKTSFGLAMSL   80 (237)
T ss_dssp             HHTTCCEECCCCBTSCSHHHHHHHHH
T ss_pred             HHCCCCEEEEecCCChHHHHHHHHHH
Confidence            34788888999999999987654443

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.56  E-value=0.15  Score=37.92  Aligned_cols=39  Identities=23%  Similarity=0.300  Sum_probs=31.2

Q ss_pred             ccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613           30 GCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus        30 Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      ..++.+.|.=|.||||+.-.|+-.+...|.-...+|-+.
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp   58 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP   58 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            457777799999999999999888866677677777663

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.30  E-value=0.057  Score=43.34  Aligned_cols=22  Identities=18%  Similarity=0.382  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNKEL   54 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g~l   54 (190)
                      ..|+|++|.|||+++.-|+..+
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHHHH
Confidence            4688999999999999888766

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.19  E-value=0.2  Score=33.78  Aligned_cols=36  Identities=22%  Similarity=0.169  Sum_probs=25.2

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL   64 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~   64 (190)
                      +|.+..|+||=.|||||-|-.........+...+.+
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~i   36 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVI   36 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEE
Confidence            589999999999999996655444443444444444

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.10  E-value=0.046  Score=43.16  Aligned_cols=20  Identities=30%  Similarity=0.271  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ++|+|+-|+|||||+-.|.-
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            89999999999999999853

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.05  E-value=0.14  Score=38.14  Aligned_cols=37  Identities=32%  Similarity=0.346  Sum_probs=30.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      +++|.|.=|.||||++-.|+..+...|.-...+|-+.
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~   39 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP   39 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            5788999999999999999998866666667777553

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.35  E-value=0.094  Score=37.47  Aligned_cols=19  Identities=26%  Similarity=0.351  Sum_probs=15.6

Q ss_pred             CccEEEEECCCCCcHHHHH
Q 029613           29 KGCVVWITGLSGSGKSTLA   47 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLl   47 (190)
                      .|.-+.|.+|.|||||+.+
T Consensus        39 ~~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             TCSCEEEECSSHHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHHH
Confidence            4566779999999999875

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.45  E-value=0.16  Score=35.80  Aligned_cols=20  Identities=25%  Similarity=0.368  Sum_probs=14.7

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 029613           33 VWITGLSGSGKSTLAFSVNK   52 (190)
Q Consensus        33 i~L~G~nGsGKSTLlr~l~g   52 (190)
                      ..+++|.|||||.++-.++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHH
Confidence            34779999999986555543

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.70  E-value=0.41  Score=32.53  Aligned_cols=37  Identities=22%  Similarity=0.113  Sum_probs=26.2

Q ss_pred             CCccEEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEE
Q 029613           28 QKGCVVWITGLSGSGKSTLAFSVNKELYSRGKLSYIL   64 (190)
Q Consensus        28 ~~Geii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~   64 (190)
                      +.|.+..|+||=.|||||-|-.....+...+.-.+.+
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i   41 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF   41 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEE
Confidence            4799999999999999996655554454445444443

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.37  E-value=0.4  Score=35.88  Aligned_cols=37  Identities=32%  Similarity=0.294  Sum_probs=29.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhCCCcEEEEcCcc
Q 029613           32 VVWITGLSGSGKSTLAFSVNKELYSRGKLSYILDGDN   68 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~g~l~~~~~g~i~~~g~~   68 (190)
                      .++|.|.=|.||||++--|+..+...|.-...+|-+.
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~Dp   40 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP   40 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCC
Confidence            5678899999999999988887766677667777553

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=84.92  E-value=0.44  Score=33.50  Aligned_cols=28  Identities=32%  Similarity=0.300  Sum_probs=23.6

Q ss_pred             CccEEEEECCCCCcHHHHHHHHHHHHhhCC
Q 029613           29 KGCVVWITGLSGSGKSTLAFSVNKELYSRG   58 (190)
Q Consensus        29 ~Geii~L~G~nGsGKSTLlr~l~g~l~~~~   58 (190)
                      |+.+++|+|-|  ||||...+|..++...+
T Consensus         1 p~kvI~VTGTn--GKTTt~~mi~~iL~~~g   28 (214)
T d1gg4a4           1 PARVVALTGSS--GKTSVKEMTAAILSQCG   28 (214)
T ss_dssp             CCEEEEEECSS--CHHHHHHHHHHHHTTTS
T ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHHhCC
Confidence            57899999985  79999999999885444

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=83.28  E-value=0.81  Score=32.55  Aligned_cols=28  Identities=25%  Similarity=0.245  Sum_probs=23.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHHhhCCCc
Q 029613           31 CVVWITGLSGSGKSTLAFSVNKELYSRGKL   60 (190)
Q Consensus        31 eii~L~G~nGsGKSTLlr~l~g~l~~~~~g   60 (190)
                      .+++|+|-|  ||||...+|.-+|...+.-
T Consensus         6 ~vI~ITGT~--GKTTt~~~l~~iL~~~g~~   33 (234)
T d1e8ca3           6 RLVGVTGTN--GKTTTTQLLAQWSQLLGEI   33 (234)
T ss_dssp             EEEEEESSS--CHHHHHHHHHHHHHHTTCC
T ss_pred             eEEEEECCC--cHHHHHHHHHHHHHHCCCC
Confidence            589999986  9999999999988655543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.06  E-value=0.46  Score=35.51  Aligned_cols=28  Identities=29%  Similarity=0.268  Sum_probs=22.3

Q ss_pred             cccCCccEEEEECCCCCcHHHHHHHHHHH
Q 029613           25 LLNQKGCVVWITGLSGSGKSTLAFSVNKE   53 (190)
Q Consensus        25 l~i~~Geii~L~G~nGsGKSTLlr~l~g~   53 (190)
                      +.+.++ +.+|+|||||||||++.+|.-.
T Consensus        20 i~f~~~-lnvlvG~NgsGKS~iL~Ai~~~   47 (308)
T d1e69a_          20 IGFSDR-VTAIVGPNGSGKSNIIDAIKWV   47 (308)
T ss_dssp             EECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred             EeCCCC-eEEEECCCCCcHHHHHHHHHHH
Confidence            334443 8899999999999999999643

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.24  E-value=0.46  Score=33.70  Aligned_cols=20  Identities=35%  Similarity=0.378  Sum_probs=17.2

Q ss_pred             EEEEECCCCCcHHHHHHHHH
Q 029613           32 VVWITGLSGSGKSTLAFSVN   51 (190)
Q Consensus        32 ii~L~G~nGsGKSTLlr~l~   51 (190)
                      ++.|+|..+||||.++..++
T Consensus         1 iiLVtGGarSGKS~~AE~l~   20 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALI   20 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEECCCCccHHHHHHHHH
Confidence            46799999999999998764

>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.06  E-value=0.48  Score=37.18  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=20.7

Q ss_pred             cccCCccEEEEEC--CCCCcHHHHHHH
Q 029613           25 LLNQKGCVVWITG--LSGSGKSTLAFS   49 (190)
Q Consensus        25 l~i~~Geii~L~G--~nGsGKSTLlr~   49 (190)
                      ++-.+|+.+-+.|  ||+||||+|+-+
T Consensus        11 vt~P~g~~~yvaaAFPSaCGKTnlAMl   37 (363)
T d1khba1          11 ITNPEGEKKYLAAAFPSACGKTNLAMM   37 (363)
T ss_dssp             EECTTSCEEEEEEECCTTSCHHHHHTC
T ss_pred             ecCCCCCEEEEEEecCccccchhHHHh
Confidence            4456799999997  899999999864