Citrus Sinensis ID: 029616

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEVCLLLFFIVSLVYHLKHHCTFTGLCIDRSS
Secondary Structure (PSIPRED)
cccEEEEEEcccccccHHHHHHHHHccccEEEEcccccEEccccccccccEEcccccHHHHHHHHHHHcHHHHHHccccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccEEEEcccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccccHHHHHHHHHHccccEEEEccccEEEccccccccccEccccccHHHHHHHHHHccHHHHHHccHHHHHHHHcccccccHHHHcccccccEEEEEEcHHHHHHHHHHHHHHccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccc
Coil and Loop (DISEMBL)
MKYRYAMvcssnqnrSMEAHYLLKRhgfdvssygtgahvklpgpslrepnvyefgtpykqMFDDLrrkdpelykrngilpmlkrnigvkaapqrwqdnaldgsfDIVFTFEEKVFDTVVEDLntreqpfmKTVLVINLevkdnheeaaiggrlTFDLCQEVCLLLFFIVSLVYHLKHHctftglcidrss
Flexible Loop (DISEMBL)
mkyryamvcssnqnRSMEAHYLLKRHGFDVSSYGTGahvklpgpslrepNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDlntreqpfmKTVLVINLEVKDNHEEAAIGGRLTFDLCQEVCLLLFFIVSLVYHLKHHCtftglcidrss
Low Complexity Region (SEG)
MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEVCLLLFFIVSLVYHLKHHCTFTGLCIDRSS
Disordered region (IsUnstruct)
******************AHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEVCLLLFFIVSLVYHLKHHCTFTGLCI****
Disordered Region (DISOPRED)
*KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEVCLLLFFIVSLVYHLKHHCTFTGLCID***
Disordered Region (DISEMBL)
MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEVCLLLFFIVSLVYHLKHHCTFTGLCIDRSS
Disordered Region (DISPRO)
MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEVCLLLFFIVSLVYHLKHHCTFTGLCIDR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEVCLLLFFIVSLVYHLKHHCTFTGLCIDRSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
Q6PC19	194	RNA polymerase II subunit	yes	no	0.810	0.793	0.576	7e-48
Q5ZJQ7	194	RNA polymerase II subunit	yes	no	0.810	0.793	0.576	4e-47
Q17QI2	194	RNA polymerase II subunit	yes	no	0.810	0.793	0.576	5e-47
Q9CY97	194	RNA polymerase II subunit	yes	no	0.810	0.793	0.583	6e-47
Q4KLK9	194	RNA polymerase II subunit	yes	no	0.810	0.793	0.570	7e-47
Q9NP77	194	RNA polymerase II subunit	yes	no	0.810	0.793	0.570	8e-47
Q6NRQ7	194	RNA polymerase II subunit	N/A	no	0.810	0.793	0.564	8e-46
Q558Z3	214	RNA polymerase II subunit	yes	no	0.810	0.719	0.5	6e-44
A6NK39	194	Putative RNA polymerase I	no	no	0.810	0.793	0.532	6e-42
O42868	197	RNA polymerase II subunit	yes	no	0.810	0.781	0.480	1e-41

>sp|Q6PC19|SSU72_DANRE RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio GN=ssu72 PE=2 SV=1

 Score =  189 bits (481), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 90/156 (57%), Positives = 119/156 (76%), Gaps = 2/156 (1%)

Query: 4   RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
           R A+VCSSNQNRSMEAH +L + GFDV S+GTG HVKLPGP+  +PN+Y+F T Y+QM++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
           DL RKD ELY +NGIL ML RN  +K+ P+R+Q  +    FD+V T EE+V+D V+EDLN
Sbjct: 67  DLVRKDKELYTQNGILHMLDRNKRIKSRPERFQ--SCRDQFDLVITCEERVYDQVLEDLN 124

Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
           +REQ   + V VIN++++DNHEEA +G  L  +LCQ
Sbjct: 125 SREQESFQPVHVINVDIQDNHEEATLGAFLICELCQ 160

May be involved in the C-terminal domain of RNA polymerase II dephosphorylation, RNA processing and termination.
Danio rerio (taxid: 7955)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6

>sp|Q5ZJQ7|SSU72_CHICK RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus GN=SSU72 PE=2 SV=1

 Score =  187 bits (474), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/156 (57%), Positives = 116/156 (74%), Gaps = 2/156 (1%)

Query: 4   RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
           R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q+      FD++ T EE+V+D VVEDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQN--CKDVFDLILTCEERVYDQVVEDLN 124

Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
           +REQ   + V VIN++++DNHEEA +G  L  +LCQ
Sbjct: 125 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQ 160

May be involved in the C-terminal domain of RNA polymerase II dephosphorylation, RNA processing and termination.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q17QI2|SSU72_BOVIN RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus GN=SSU72 PE=2 SV=1

 Score =  187 bits (474), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/156 (57%), Positives = 116/156 (74%), Gaps = 2/156 (1%)

Query: 4   RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
           R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q+      FD++ T EE+V+D VVEDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQN--CKDLFDLILTCEERVYDQVVEDLN 124

Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
           +REQ   + V VIN++++DNHEEA +G  L  +LCQ
Sbjct: 125 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQ 160

May be involved in the C-terminal domain of RNA polymerase II dephosphorylation, RNA processing and termination.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q9CY97|SSU72_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus GN=Ssu72 PE=2 SV=1

 Score =  186 bits (473), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 91/156 (58%), Positives = 117/156 (75%), Gaps = 2/156 (1%)

Query: 4   RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
           R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D VVEDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCTD-LFDLILTCEERVYDQVVEDLN 124

Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
           +REQ   + V V+N++++DNHEEA +G  L  +LCQ
Sbjct: 125 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQ 160

May be involved in the C-terminal domain of RNA polymerase II dephosphorylation, RNA processing and termination.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q4KLK9|SSU72_RAT RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus GN=Ssu72 PE=2 SV=1

 Score =  186 bits (472), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 89/156 (57%), Positives = 116/156 (74%), Gaps = 2/156 (1%)

Query: 4   RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
           R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q+      FD++ T EE+V+D VVEDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQN--CKDLFDLILTCEERVYDQVVEDLN 124

Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
           +REQ   + V V+N++++DNHEEA +G  L  +LCQ
Sbjct: 125 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQ 160

May be involved in the C-terminal domain of RNA polymerase II dephosphorylation, RNA processing and termination.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q9NP77|SSU72_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens GN=SSU72 PE=1 SV=1

 Score =  186 bits (472), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 89/156 (57%), Positives = 116/156 (74%), Gaps = 2/156 (1%)

Query: 4   RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
           R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q+      FD++ T EE+V+D VVEDLN
Sbjct: 67  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQN--CKDLFDLILTCEERVYDQVVEDLN 124

Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
           +REQ   + V V+N++++DNHEEA +G  L  +LCQ
Sbjct: 125 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQ 160

May be involved in the C-terminal domain of RNA polymerase II dephosphorylation, RNA processing and termination.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q6NRQ7|SSU72_XENLA RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Xenopus laevis GN=ssu72 PE=2 SV=1

 Score =  182 bits (463), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 88/156 (56%), Positives = 116/156 (74%), Gaps = 2/156 (1%)

Query: 4   RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
           R A+VCSSNQNRSMEAH +L +  F+V S+GTG HVKLPGP+  +PNVY+F T Y+QM+ 
Sbjct: 7   RVAVVCSSNQNRSMEAHNILSKRSFNVRSFGTGTHVKLPGPAPDKPNVYDFKTTYEQMYS 66

Query: 64  DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
           DL +KD ELY +NGIL ML RN  +K  P+R+Q+      FD+V T EE+V+D VVE+LN
Sbjct: 67  DLLKKDKELYTQNGILHMLDRNRRIKPRPERFQN--CKDYFDLVITCEERVYDQVVEELN 124

Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
           +REQ   + V VIN++++DNHEEA +G  L  +LCQ
Sbjct: 125 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQ 160

May be involved in the C-terminal domain of RNA polymerase II dephosphorylation, RNA processing and termination.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q558Z3|SSU72_DICDI RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Dictyostelium discoideum GN=ssu72 PE=3 SV=1

 Score =  176 bits (447), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 117/158 (74%), Gaps = 4/158 (2%)

Query: 4   RYAMVCSSNQNRSMEAHYLLKRHGF-DVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMF 62
           R AMVC+SNQNRS+EAH+L  ++GF ++ S+GT AH KLPGPS+ +PN++ FGTPY++++
Sbjct: 23  RIAMVCASNQNRSLEAHHLFVKNGFKNIRSFGTSAHCKLPGPSIHQPNIFSFGTPYQEIY 82

Query: 63  DDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDL 122
             L+ +D ELY RNG+L ML+RNI VK AP++WQ+      F+IV+TF+++V+D V+EDL
Sbjct: 83  TSLKNQDQELYIRNGLLNMLERNISVKLAPEKWQEEQ-QSKFEIVYTFDQRVYDAVIEDL 141

Query: 123 NTRE--QPFMKTVLVINLEVKDNHEEAAIGGRLTFDLC 158
             R+     ++ V +INL+VKD HEEA  G +   ++ 
Sbjct: 142 LQRDVSSSLLQPVHIINLQVKDTHEEAVGGAQHALEIT 179

May be involved in the C-terminal domain of RNA polymerase II dephosphorylation, RNA processing and termination.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|A6NK39|S72L1_HUMAN Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 1 OS=Homo sapiens PE=3 SV=1

 Score =  170 bits (430), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 83/156 (53%), Positives = 110/156 (70%), Gaps = 2/156 (1%)

Query: 4   RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
           R A+VC SN NRSMEAH +L+R G  V S+GT +HV+LPGP    P VY+F T YKQM++
Sbjct: 7   RVAVVCVSNVNRSMEAHSILRRKGLSVRSFGTESHVRLPGPRPNRPVVYDFATTYKQMYN 66

Query: 64  DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
           DL RKD E Y RNGIL +L RN  +K  P+R+Q+     SFD++FT EE V+DTVVEDL 
Sbjct: 67  DLLRKDRERYTRNGILHILGRNERIKPGPERFQE--CTDSFDVIFTCEESVYDTVVEDLC 124

Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
           +REQ   + V VIN++++D  E+A +G  L  ++CQ
Sbjct: 125 SREQQTFQPVHVINMDIQDTLEDATLGAFLICEICQ 160

May be involved in the C-terminal domain of RNA polymerase II dephosphorylation, RNA processing and termination.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|O42868|SSU72_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase ssu72 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssu72 PE=1 SV=1

 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 111/156 (71%), Gaps = 2/156 (1%)

Query: 6   AMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDL 65
           +++C+SNQNRSMEAH +LK  G+ V S+GTG+ V+LPGPS+ +PN+Y+FG PY +++ +L
Sbjct: 10  SVICASNQNRSMEAHNVLKNAGYQVDSFGTGSAVRLPGPSIDKPNIYQFGYPYDEIYKEL 69

Query: 66  RRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTR 125
             +D  LY  NG+L ML RN  +K AP RWQD   D  ++IV T EE+ +D + EDL  R
Sbjct: 70  EAQDSRLYTANGLLKMLDRNRRIKRAPCRWQDQ--DSIYNIVITCEERCYDAICEDLYRR 127

Query: 126 EQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV 161
            +   + V +IN+++KDNHEEA++GG+   DL  ++
Sbjct: 128 GETLNRPVYLINVDIKDNHEEASVGGKAILDLVNKL 163

Component of the cleavage and polyadenylation factor (CPF) complex, which plays a key role in polyadenylation-dependent pre-mRNA 3'-end formation and cooperates with cleavage factors including the CFIA complex and NAB4/CFIB. Ssu72 is required for 3'-end formation of snoRNAs.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
449439211	193	PREDICTED: RNA polymerase II subunit A C	0.847	0.834	0.863	1e-80
224135609	193	predicted protein [Populus trichocarpa]	0.847	0.834	0.850	6e-79
225435973	193	PREDICTED: RNA polymerase II subunit A C	0.847	0.834	0.857	3e-78
255549148	193	Protein SSU72, putative [Ricinus communi	0.847	0.834	0.832	8e-77
297842133	193	hypothetical protein ARALYDRAFT_895246 [	0.847	0.834	0.819	1e-76
15219558	193	Ssu72-like protein [Arabidopsis thaliana	0.847	0.834	0.813	4e-76
351724119	193	uncharacterized protein LOC100306388 [Gl	0.847	0.834	0.807	4e-75
224286621	193	unknown [Picea sitchensis]	0.847	0.834	0.763	2e-72
168045018	193	predicted protein [Physcomitrella patens	0.847	0.834	0.732	5e-69
168064189	193	predicted protein [Physcomitrella patens	0.831	0.818	0.734	9e-68

>gi|449439211|ref|XP_004137380.1| PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Cucumis sativus] gi|449506693|ref|XP_004162820.1| PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Cucumis sativus]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 139/161 (86%), Positives = 148/161 (91%)

Query: 1   MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60
           MKYRYAMVCSSNQNRSMEAH +LK  GF+VSSYGTGAHVKLPGPSLREPNVY+FGTPYK 
Sbjct: 1   MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120
           MFDDLRRKDPELYKRNGILPMLKRN  VK APQRWQDNA DGSFD+VFTFEEKVFD V+E
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIE 120

Query: 121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV 161
           DLNTR+   MKTVL++NLEVKDNHEEAAIG RLTFDLCQE+
Sbjct: 121 DLNTRDHAMMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEI 161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135609|ref|XP_002322116.1| predicted protein [Populus trichocarpa] gi|222869112|gb|EEF06243.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 137/161 (85%), Positives = 150/161 (93%)

Query: 1   MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60
           MK+RYAMVCSSNQNRSMEAH LLKRHGFDVSSYGTGAHVKLPGPSLREPNVY+FGTPYKQ
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120
           MFDDLRRKDPELYKRNGILPMLKRN GVK APQRWQDNA DGSF +VFTFEEKVFD V+E
Sbjct: 61  MFDDLRRKDPELYKRNGILPMLKRNSGVKLAPQRWQDNAADGSFSVVFTFEEKVFDMVLE 120

Query: 121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV 161
           DL+ R+   +K+VLVINLEVKDNHEEAA+GG+LT +LCQ++
Sbjct: 121 DLHNRDHVLLKSVLVINLEVKDNHEEAAVGGQLTLELCQKI 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435973|ref|XP_002271255.1| PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Vitis vinifera] gi|296083946|emb|CBI24334.3| unnamed protein product [Vitis vinifera]

 Score =  296 bits (758), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 138/161 (85%), Positives = 145/161 (90%)

Query: 1   MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60
           MK+RYAMVCSSNQNRSMEAH LLK+ GFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYK 
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHSLLKKQGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120
           MFDDLRRKDP+LYKRNGILPMLKRN  VK APQRWQDNA DG FD+VFTFEEKVFD VVE
Sbjct: 61  MFDDLRRKDPDLYKRNGILPMLKRNSSVKTAPQRWQDNAADGPFDVVFTFEEKVFDMVVE 120

Query: 121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV 161
           DL+ R+   MKTVLVINLEVKDNHEEAAIG RL  DLCQE+
Sbjct: 121 DLHNRDHVLMKTVLVINLEVKDNHEEAAIGARLALDLCQEI 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549148|ref|XP_002515629.1| Protein SSU72, putative [Ricinus communis] gi|223545267|gb|EEF46774.1| Protein SSU72, putative [Ricinus communis]

 Score =  291 bits (745), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 134/161 (83%), Positives = 145/161 (90%)

Query: 1   MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60
           MK RYAMVCSSNQNRSMEAH LLK  GFDVSSYGTGAHVKLPGPSLREPNVY+FGTPYKQ
Sbjct: 1   MKLRYAMVCSSNQNRSMEAHSLLKMQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120
           MFDDLRRKDP+LYKRNGILPMLKRN  VK APQRWQDNA DGSFD+VF+FEEKVFD V+E
Sbjct: 61  MFDDLRRKDPDLYKRNGILPMLKRNSSVKLAPQRWQDNAADGSFDVVFSFEEKVFDMVIE 120

Query: 121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV 161
           DL+ R+   M++VLVINLEVKDNHEEAAIG RL  +LCQE+
Sbjct: 121 DLHNRDHVLMRSVLVINLEVKDNHEEAAIGARLALELCQEI 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842133|ref|XP_002888948.1| hypothetical protein ARALYDRAFT_895246 [Arabidopsis lyrata subsp. lyrata] gi|297334789|gb|EFH65207.1| hypothetical protein ARALYDRAFT_895246 [Arabidopsis lyrata subsp. lyrata]

 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 132/161 (81%), Positives = 147/161 (91%)

Query: 1   MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60
           M++RYAMVCSSNQNRSMEAH LLKR G DV+SYGTG+HVKLPGPS+REPNVY+FGTPYKQ
Sbjct: 1   MRFRYAMVCSSNQNRSMEAHALLKRQGLDVASYGTGSHVKLPGPSVREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120
           MFD+LRRKDPELYKRNGIL MLKRN+ VK APQRWQDNA DG FD+V TFEEKVFD+V+E
Sbjct: 61  MFDELRRKDPELYKRNGILQMLKRNLSVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLE 120

Query: 121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV 161
           DLN REQ  MKT+LV+NLEVKDNHEEAAIGGRL  +LCQE+
Sbjct: 121 DLNNREQSLMKTILVMNLEVKDNHEEAAIGGRLALELCQEI 161

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219558|ref|NP_177523.1| Ssu72-like protein [Arabidopsis thaliana] gi|12324205|gb|AAG52071.1|AC012679_9 unknown protein; 85102-83684 [Arabidopsis thaliana] gi|26453040|dbj|BAC43596.1| unknown protein [Arabidopsis thaliana] gi|28973307|gb|AAO63978.1| unknown protein [Arabidopsis thaliana] gi|332197391|gb|AEE35512.1| Ssu72-like protein [Arabidopsis thaliana]

 Score =  289 bits (739), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 131/161 (81%), Positives = 146/161 (90%)

Query: 1   MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60
           M++RYAMVCSSNQNRSMEAH LLKR G DV+SYGTG+HVKLPGPSLREPNVY+FGTPYKQ
Sbjct: 1   MRFRYAMVCSSNQNRSMEAHALLKRQGLDVASYGTGSHVKLPGPSLREPNVYDFGTPYKQ 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120
           MFD+LRRKDPELYKRNGIL M+KRN+ VK APQRWQDNA DG FD+V TFEEKVFD+V+E
Sbjct: 61  MFDELRRKDPELYKRNGILQMIKRNLSVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLE 120

Query: 121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV 161
           DLN REQ   KT+LV+NLEVKDNHEEAAIGGRL  +LCQE+
Sbjct: 121 DLNNREQSLTKTILVMNLEVKDNHEEAAIGGRLALELCQEI 161

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724119|ref|NP_001238070.1| uncharacterized protein LOC100306388 [Glycine max] gi|255628381|gb|ACU14535.1| unknown [Glycine max]

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 130/161 (80%), Positives = 145/161 (90%)

Query: 1   MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60
           MK+RYAMVCSSNQNRSMEAH+LLKR GFDVSSYGTGAHVKLPGPSLREPNVY+FGTPYK 
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHFLLKRQGFDVSSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120
           M +DLRRKDP+LYKRNGI PMLKRN  VK APQRWQ+NA DGSFD+V TFEEKVFD V+E
Sbjct: 61  MIEDLRRKDPDLYKRNGIFPMLKRNSTVKLAPQRWQENAADGSFDVVVTFEEKVFDMVIE 120

Query: 121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV 161
           DL+ R+   +KTVLVINLEVKDNH+EAA+G RLT DLC+E+
Sbjct: 121 DLHNRDHALLKTVLVINLEVKDNHDEAAVGARLTLDLCREI 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224286621|gb|ACN41015.1| unknown [Picea sitchensis]

 Score =  276 bits (707), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 123/161 (76%), Positives = 146/161 (90%)

Query: 1   MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60
           MK R+AMVC+SNQNRSMEAH LLK+HGFDVSSYGTGAHVKLPGPS+REPNVY+FGTPY++
Sbjct: 1   MKLRHAMVCASNQNRSMEAHALLKKHGFDVSSYGTGAHVKLPGPSIREPNVYDFGTPYRR 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120
           MFDDL+RKDPELYKRNG+L MLKRN+ VK APQRWQ+NA+DG FD+VFTFEE+VFD V+E
Sbjct: 61  MFDDLKRKDPELYKRNGLLQMLKRNLNVKMAPQRWQENAVDGPFDVVFTFEERVFDMVIE 120

Query: 121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV 161
           DL  RE   M++VLV+NL+VKD+HEEAA+G RL  DLCQ++
Sbjct: 121 DLQNREPILMRSVLVVNLDVKDSHEEAAVGARLALDLCQKL 161

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168045018|ref|XP_001774976.1| predicted protein [Physcomitrella patens subsp. patens] gi|162673723|gb|EDQ60242.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  265 bits (678), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 118/161 (73%), Positives = 139/161 (86%)

Query: 1   MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60
           MK R+AMVC+SNQNRSMEAH LL+R G +VSSYGTG+HVKLPGPS REPNVY FGTPY+ 
Sbjct: 1   MKLRHAMVCASNQNRSMEAHALLQRQGLNVSSYGTGSHVKLPGPSAREPNVYSFGTPYRV 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120
           M +DL +KDPELYKRNG+L MLKRN+GVK APQRWQDNA DG+FD+VFTFEE+VFDTV++
Sbjct: 61  MLEDLMKKDPELYKRNGLLQMLKRNLGVKEAPQRWQDNAADGTFDVVFTFEERVFDTVID 120

Query: 121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV 161
           DL  RE   MK  L+IN++VKDNH+EAAIGG+L  DLCQ +
Sbjct: 121 DLENRETNLMKLALIINMDVKDNHDEAAIGGKLALDLCQRL 161

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168064189|ref|XP_001784047.1| predicted protein [Physcomitrella patens subsp. patens] gi|162664433|gb|EDQ51153.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  261 bits (667), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 116/158 (73%), Positives = 135/158 (85%)

Query: 1   MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60
           MK R+AMVC+SNQNRSMEAH LL+R G DVSSYGTG+HVKLPGPS REPNVY FGTPY+ 
Sbjct: 1   MKLRHAMVCASNQNRSMEAHALLQRQGLDVSSYGTGSHVKLPGPSAREPNVYSFGTPYRT 60

Query: 61  MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120
           M +DL +KDPELYKRNG+L MLKRN+GVK APQRWQDNA DG+FD+VFTFEE+VFD V++
Sbjct: 61  MLEDLIKKDPELYKRNGLLQMLKRNLGVKEAPQRWQDNAADGAFDVVFTFEERVFDMVID 120

Query: 121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLC 158
           DL  RE   +K  L+IN++VKDNHEEAAIGG+L  D C
Sbjct: 121 DLGNRETNLLKLALIINMDVKDNHEEAAIGGKLALDFC 158

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:2027789	193	AT1G73820 [Arabidopsis thalian	0.847	0.834	0.813	1.6e-70
ZFIN|ZDB-GENE-040426-1689	194	ssu72 "SSU72 RNA polymerase II	0.810	0.793	0.583	5.6e-45
UNIPROTKB|Q5ZJQ7	194	SSU72 "RNA polymerase II subun	0.810	0.793	0.589	1.5e-44
UNIPROTKB|Q17QI2	194	SSU72 "RNA polymerase II subun	0.810	0.793	0.589	1.5e-44
UNIPROTKB|E2QZ84	194	SSU72 "Uncharacterized protein	0.810	0.793	0.589	1.5e-44
MGI|MGI:1916241	194	Ssu72 "Ssu72 RNA polymerase II	0.810	0.793	0.583	1.5e-44
UNIPROTKB|Q9NP77	194	SSU72 "RNA polymerase II subun	0.810	0.793	0.583	1.9e-44
RGD|1307854	194	Ssu72 "SSU72 RNA polymerase II	0.810	0.793	0.583	1.9e-44
UNIPROTKB|F1RJC9	195	SSU72 "Uncharacterized protein	0.810	0.789	0.585	1.3e-43
UNIPROTKB|J9NXK3	194	J9NXK3 "Uncharacterized protei	0.810	0.793	0.564	1.1e-41

TAIR|locus:2027789 AT1G73820 [Arabidopsis thaliana (taxid:3702)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 131/161 (81%), Positives = 146/161 (90%)

Query:     1 MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQ 60
             M++RYAMVCSSNQNRSMEAH LLKR G DV+SYGTG+HVKLPGPSLREPNVY+FGTPYKQ
Sbjct:     1 MRFRYAMVCSSNQNRSMEAHALLKRQGLDVASYGTGSHVKLPGPSLREPNVYDFGTPYKQ 60

Query:    61 MFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVE 120
             MFD+LRRKDPELYKRNGIL M+KRN+ VK APQRWQDNA DG FD+V TFEEKVFD+V+E
Sbjct:    61 MFDELRRKDPELYKRNGILQMIKRNLSVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLE 120

Query:   121 DLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV 161
             DLN REQ   KT+LV+NLEVKDNHEEAAIGGRL  +LCQE+
Sbjct:   121 DLNNREQSLTKTILVMNLEVKDNHEEAAIGGRLALELCQEI 161

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006397 "mRNA processing" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0006470 "protein dephosphorylation" evidence=RCA

ZFIN|ZDB-GENE-040426-1689 ssu72 "SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 91/156 (58%), Positives = 120/156 (76%)

Query:     4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
             R A+VCSSNQNRSMEAH +L + GFDV S+GTG HVKLPGP+  +PN+Y+F T Y+QM++
Sbjct:     7 RVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMYN 66

Query:    64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
             DL RKD ELY +NGIL ML RN  +K+ P+R+Q +  D  FD+V T EE+V+D V+EDLN
Sbjct:    67 DLVRKDKELYTQNGILHMLDRNKRIKSRPERFQ-SCRD-QFDLVITCEERVYDQVLEDLN 124

Query:   124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
             +REQ   + V VIN++++DNHEEA +G  L  +LCQ
Sbjct:   125 SREQESFQPVHVINVDIQDNHEEATLGAFLICELCQ 160

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5ZJQ7 SSU72 "RNA polymerase II subunit A C-terminal domain phosphatase SSU72" [Gallus gallus (taxid:9031)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 92/156 (58%), Positives = 117/156 (75%)

Query:     4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
             R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++
Sbjct:     7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query:    64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
             DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D VVEDLN
Sbjct:    67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-VFDLILTCEERVYDQVVEDLN 124

Query:   124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
             +REQ   + V VIN++++DNHEEA +G  L  +LCQ
Sbjct:   125 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQ 160

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q17QI2 SSU72 "RNA polymerase II subunit A C-terminal domain phosphatase SSU72" [Bos taurus (taxid:9913)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 92/156 (58%), Positives = 117/156 (75%)

Query:     4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
             R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++
Sbjct:     7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query:    64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
             DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D VVEDLN
Sbjct:    67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 124

Query:   124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
             +REQ   + V VIN++++DNHEEA +G  L  +LCQ
Sbjct:   125 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQ 160

GO:0008420 "CTD phosphatase activity" evidence=ISS

GO:0070940 "dephosphorylation of RNA polymerase II C-terminal domain" evidence=ISS

GO:0006378 "mRNA polyadenylation" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2QZ84 SSU72 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 92/156 (58%), Positives = 117/156 (75%)

Query:     4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
             R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++
Sbjct:     7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query:    64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
             DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D VVEDLN
Sbjct:    67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCRD-LFDLILTCEERVYDQVVEDLN 124

Query:   124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
             +REQ   + V VIN++++DNHEEA +G  L  +LCQ
Sbjct:   125 SREQETCQPVHVINVDIQDNHEEATLGAFLICELCQ 160

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

MGI|MGI:1916241 Ssu72 "Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 91/156 (58%), Positives = 117/156 (75%)

Query:     4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
             R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++
Sbjct:     7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query:    64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
             DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D VVEDLN
Sbjct:    67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCTD-LFDLILTCEERVYDQVVEDLN 124

Query:   124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
             +REQ   + V V+N++++DNHEEA +G  L  +LCQ
Sbjct:   125 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQ 160

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008420 "CTD phosphatase activity" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0070940 "dephosphorylation of RNA polymerase II C-terminal domain" evidence=ISO

UNIPROTKB|Q9NP77 SSU72 "RNA polymerase II subunit A C-terminal domain phosphatase SSU72" [Homo sapiens (taxid:9606)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 91/156 (58%), Positives = 117/156 (75%)

Query:     4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
             R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++
Sbjct:     7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query:    64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
             DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D VVEDLN
Sbjct:    67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 124

Query:   124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
             +REQ   + V V+N++++DNHEEA +G  L  +LCQ
Sbjct:   125 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQ 160

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0070940 "dephosphorylation of RNA polymerase II C-terminal domain" evidence=IDA

GO:0008420 "CTD phosphatase activity" evidence=IDA

GO:0006378 "mRNA polyadenylation" evidence=IMP

RGD|1307854 Ssu72 "SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 91/156 (58%), Positives = 117/156 (75%)

Query:     4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
             R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++
Sbjct:     7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query:    64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
             DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D VVEDLN
Sbjct:    67 DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 124

Query:   124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
             +REQ   + V V+N++++DNHEEA +G  L  +LCQ
Sbjct:   125 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQ 160

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=ISO;ISS

GO:0008420 "CTD phosphatase activity" evidence=ISO;ISS

GO:0070940 "dephosphorylation of RNA polymerase II C-terminal domain" evidence=ISO;ISS

UNIPROTKB|F1RJC9 SSU72 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 92/157 (58%), Positives = 117/157 (74%)

Query:     4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
             R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++
Sbjct:     7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFRTTYDQMYN 66

Query:    64 DLRRKDPEL-YKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDL 122
             DL RKD EL Y +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D VVEDL
Sbjct:    67 DLLRKDKELHYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDL 124

Query:   123 NTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
             N+REQ   + V VIN++++DNHEEA +G  L  +LCQ
Sbjct:   125 NSREQETCQPVHVINVDIQDNHEEATLGAFLICELCQ 161

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

UNIPROTKB|J9NXK3 J9NXK3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 88/156 (56%), Positives = 114/156 (73%)

Query:     4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
             + A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++
Sbjct:     7 KVAVVCSSNQNRSMEAHNILNKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 66

Query:    64 DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
             DL RKD +LY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D VVEDL 
Sbjct:    67 DLLRKDKDLYTQNGILHMLDRNKRIKPHPERFQ-NCRD-VFDLIVTCEERVYDQVVEDLT 124

Query:   124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
              REQ   + V VIN++++DN EEA +G  L  +LCQ
Sbjct:   125 LREQETCQPVHVINVDIQDNLEEATLGAFLICELCQ 160

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q17QI2	SSU72_BOVIN	3, ., 1, ., 3, ., 1, 6	0.5769	0.8105	0.7938	yes	no
Q5ZJQ7	SSU72_CHICK	3, ., 1, ., 3, ., 1, 6	0.5769	0.8105	0.7938	yes	no
Q9CY97	SSU72_MOUSE	3, ., 1, ., 3, ., 1, 6	0.5833	0.8105	0.7938	yes	no
Q6C195	SSU72_YARLI	3, ., 1, ., 3, ., 1, 6	0.4746	0.8210	0.8082	yes	no
Q4KLK9	SSU72_RAT	3, ., 1, ., 3, ., 1, 6	0.5705	0.8105	0.7938	yes	no
Q9NP77	SSU72_HUMAN	3, ., 1, ., 3, ., 1, 6	0.5705	0.8105	0.7938	yes	no
Q6PC19	SSU72_DANRE	3, ., 1, ., 3, ., 1, 6	0.5769	0.8105	0.7938	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3.16	0.914
3rd Layer	3.1.3	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
pfam04722	193	pfam04722, Ssu72, Ssu72-like protein	1e-90
COG5211	197	COG5211, SSU72, RNA polymerase II-interacting prot	5e-60

>gnl|CDD|218229 pfam04722, Ssu72, Ssu72-like protein

 Score =  262 bits (673), Expect = 1e-90
 Identities = 90/158 (56%), Positives = 118/158 (74%), Gaps = 1/158 (0%)

Query: 2   KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQM 61
           K ++A+VC+SNQNRSMEAH +L + GF+V S+GTG+ VKLPGPS+ +PNVY+FGTPY ++
Sbjct: 1   KLKFAVVCASNQNRSMEAHKVLAKAGFNVRSFGTGSAVKLPGPSIDKPNVYDFGTPYDEI 60

Query: 62  FDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVED 121
           ++DL  +D ELY +NG+L ML RN  +K AP+RWQDN     FD+V T EE+VFD VVED
Sbjct: 61  YNDLESQDEELYTQNGLLHMLDRNRRIKEAPERWQDNTELK-FDVVITCEERVFDAVVED 119

Query: 122 LNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
           L  R     + V VIN+++KDNHEEA IG +   DL Q
Sbjct: 120 LMNRGSSLNQPVHVINVDIKDNHEEAIIGAKAILDLAQ 157

The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs. Length = 193

>gnl|CDD|227536 COG5211, SSU72, RNA polymerase II-interacting protein involved in transcription start site selection [Transcription]

 Score =  185 bits (471), Expect = 5e-60
 Identities = 71/154 (46%), Positives = 103/154 (66%), Gaps = 2/154 (1%)

Query: 4   RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
           + A+ C+SNQNRSME H +L + G+ V S+GTG+ V+LPG S+ +PNVY FG PY+Q++D
Sbjct: 8   KLAVTCASNQNRSMETHDVLAKAGYPVKSFGTGSAVRLPGESIDKPNVYNFGVPYQQIYD 67

Query: 64  DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
           DL  ++ + Y+ NG+L ML RN  VK AP+ WQ  + D  FD+V T EE+ FD + EDL 
Sbjct: 68  DLCMQNEDHYRENGLLYMLDRNRRVKEAPENWQQRSED--FDLVITCEERCFDAICEDLY 125

Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDL 157
            R     + V +IN+++KD  E+A  G +   +L
Sbjct: 126 ARGPSLNQCVFMINVDIKDTPEDAIAGAKAILEL 159

Length = 197

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
PF04722	195	Ssu72: Ssu72-like protein; InterPro: IPR006811 The	100.0
KOG2424	195	consensus Protein involved in transcription start	100.0
COG5211	197	SSU72 RNA polymerase II-interacting protein involv	100.0
COG0394	139	Wzb Protein-tyrosine-phosphatase [Signal transduct	97.32
PRK10126	147	tyrosine phosphatase; Provisional	95.82
PF01451	138	LMWPc: Low molecular weight phosphotyrosine protei	95.76
PRK11391	144	etp phosphotyrosine-protein phosphatase; Provision	95.31
smart00226	140	LMWPc Low molecular weight phosphatase family.	93.32
TIGR02689	126	ars_reduc_gluta arsenate reductase, glutathione/gl	90.83
PRK13530	133	arsenate reductase; Provisional	89.54
cd00115	141	LMWPc Substituted updates: Aug 22, 2001	88.21
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	86.89
TIGR03746	202	conj_TIGR03746 integrating conjugative element pro	83.47
PLN02160	136	thiosulfate sulfurtransferase	83.4
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	80.4

>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle

Probab=100.00  E-value=5.1e-102  Score=652.20  Aligned_cols=177  Identities=56%  Similarity=0.905  Sum_probs=152.7

Q ss_pred             CceEEEEccCCCCcchHHHHhHHhCCCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcCchhh
Q 029616            2 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPM   81 (190)
Q Consensus         2 ~l~~AvVCaSN~NRSMEAH~~L~k~Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NGlL~M   81 (190)
                      ++|||||||||||||||||++|+++||+|+|||||++|||||||+|+||||+|||||++||+||.+||++||++||||+|
T Consensus         1 ~l~~avVCasN~NRSMEAH~~L~~~G~~V~SfGTGs~VkLPGps~d~PnvY~FgT~Y~~iy~dL~~kd~~lY~~NGlL~M   80 (195)
T PF04722_consen    1 KLRFAVVCASNQNRSMEAHNVLKKAGFNVRSFGTGSHVKLPGPSIDKPNVYDFGTPYDDIYNDLLRKDKELYTQNGLLHM   80 (195)
T ss_dssp             -SEEEEEESSSSSHHHHHHHHHHHTT-EEEEEE-SSSEEEEESSTTCEEEE-TTS-HHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             CceEEEEccCCCCcCHHHHHHHHHCCCceEeecCCCcccCCCCCCCCCcccCCCCcHHHHHHHHHHhCHHHHHHcCcHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEEEEeeccCCHHHHHhhHHHHHHHHHHH
Q 029616           82 LKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV  161 (190)
Q Consensus        82 LdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVINvDIkDnhEeA~~Ga~~ileLc~~l  161 (190)
                      |+|||+||++|||||++++.+.|||||||||||||+|||||++|++++++||||||||||||||||++||++||+||++|
T Consensus        81 L~RN~~iK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pvHVINvDIkDnhEeA~~Ga~~ileLc~~l  160 (195)
T PF04722_consen   81 LDRNRRIKPAPERFQDCKEKGKFDVIITCEERVFDQVVEDLNSREQETNQPVHVINVDIKDNHEEATIGAFLILELCQML  160 (195)
T ss_dssp             HHHHHCH-SS--BGGG-------SEEEESSHHHHHHHHHHHHCS--SS-EEEEEEEE---SSHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCccccCCccchhcCCCCcceeEEEEechHHHHHHHHHHHhccccCCceEEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999986669999999999999999999999999999999999999999999999999999999999


Q ss_pred             H--hhhhh----HHHHHhhhhcc
Q 029616          162 C--LLLFF----IVSLVYHLKHH  178 (190)
Q Consensus       162 ~--~~~~~----~~~~~~~~~~~  178 (190)
                      +  ++.|+    |.+|..+++.|
T Consensus       161 ~~~~~~d~e~~i~~il~~fe~k~  183 (195)
T PF04722_consen  161 EEEASEDLEDEIDEILQEFEEKH  183 (195)
T ss_dssp             H--TSSSHHHHHHHHHHHHHHHH
T ss_pred             HhhccccHHHHHHHHHHHHHHHc
Confidence            9  88887    67788888877

Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.

>KOG2424 consensus Protein involved in transcription start site selection [Transcription]

Probab=100.00  E-value=5.5e-93  Score=595.22  Aligned_cols=176  Identities=56%  Similarity=0.884  Sum_probs=171.3

Q ss_pred             CCceEEEEccCCCCcchHHHHhHHhCCCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcCchh
Q 029616            1 MKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILP   80 (190)
Q Consensus         1 ~~l~~AvVCaSN~NRSMEAH~~L~k~Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NGlL~   80 (190)
                      +++|+|||||||||||||||.+|+++||+|.|||||++||||||++||||||+|||||++||+||.+||+++||+||||+
T Consensus         4 ~~l~~avvC~sN~NRSMeaH~~L~~~G~~v~S~GTg~~vklPG~~~dkPNvY~Fgt~Y~~iy~dL~~kd~~~Y~~nGiL~   83 (195)
T KOG2424|consen    4 SNLRVAVVCASNQNRSMEAHNILKKKGLNVRSFGTGSHVKLPGPSPDKPNVYDFGTTYKQIYNDLLRKDRELYTRNGILH   83 (195)
T ss_pred             ccceeeeeehhcccchHHHHHHHHHcCCcceeecCCCceeCCCCCCCCCCccccCCcHHHHHHHHHhhhHHHHhhcccch
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEEEEeeccCCHHHHHhhHHHHHHHHHH
Q 029616           81 MLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQE  160 (190)
Q Consensus        81 MLdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVINvDIkDnhEeA~~Ga~~ileLc~~  160 (190)
                      ||+|||+||++|||||++++  .|||||||||||||+|||||++|++.++|||||||+|||||||||++||++||||||+
T Consensus        84 mldRNrriK~~Per~q~~t~--~FDvV~TcEErvyD~VvEdl~~re~~~~qpVhviN~DI~Dn~EdA~~Gaf~I~elcq~  161 (195)
T KOG2424|consen   84 MLDRNRRIKPAPERFQECTE--VFDVVFTCEERVFDSVVEDLNSREQSLNQPVHVINVDIKDNHEDATLGAFLILELCQC  161 (195)
T ss_pred             hhhcccccccCCcchhhccc--cceEEEEehhHHHHHHHHHHHhcccccCCceEEEEeecccCHHhhhhhHHHHHHHHHH
Confidence            99999999999999999987  8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-hhhhh----HHHHHhhhhcc
Q 029616          161 VC-LLLFF----IVSLVYHLKHH  178 (190)
Q Consensus       161 l~-~~~~~----~~~~~~~~~~~  178 (190)
                      |+ +++|+    |.+|.+-++.|
T Consensus       162 l~~~s~d~Ed~ideil~~~ee~~  184 (195)
T KOG2424|consen  162 LQAQSDDLEDNIDEILLEFEEKH  184 (195)
T ss_pred             HHhccccHHHHHHHHHHHHHHhc
Confidence            99 88877    77888888887

>COG5211 SSU72 RNA polymerase II-interacting protein involved in transcription start site selection [Transcription]

Probab=100.00  E-value=1e-83  Score=535.20  Aligned_cols=178  Identities=40%  Similarity=0.710  Sum_probs=170.0

Q ss_pred             CceEEEEccCCCCcchHHHHhHHhCCCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcCchhh
Q 029616            2 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPM   81 (190)
Q Consensus         2 ~l~~AvVCaSN~NRSMEAH~~L~k~Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NGlL~M   81 (190)
                      .+||||+||||||||||+|.+|+++||+|.||||||.|||||+|+||||||.||+||++||+||..|+++.|+.||||.|
T Consensus         6 nlk~~v~CAsNqNRSMetH~vL~~aGy~V~SfGTgsavrLPG~siDKPNvY~FG~pY~~IY~dL~~q~~d~Y~~nGlL~m   85 (197)
T COG5211           6 NLKLAVTCASNQNRSMETHDVLAKAGYPVKSFGTGSAVRLPGESIDKPNVYNFGVPYQQIYDDLCMQNEDHYRENGLLYM   85 (197)
T ss_pred             CceEEeeeccCCCcchHHHHHHHHcCCcccccCCCcceeCCCCCCCCCCeeecCCcHHHHHHHHHhhhhhhhhhccHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEEEEeeccCCHHHHHhhHHHHHHHHHHH
Q 029616           82 LKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV  161 (190)
Q Consensus        82 LdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVINvDIkDnhEeA~~Ga~~ileLc~~l  161 (190)
                      ||||||||++|||||+..+  .||+||||||||||+|+|||..|++..+|+||+||+||||+||+|.+||++||||+.+|
T Consensus        86 LdRNrrvK~aPe~wq~~~~--~fd~ViTCEERcfdaicEdly~rg~~ln~~v~~iNvDIkD~~e~A~~G~kaILelvd~L  163 (197)
T COG5211          86 LDRNRRVKEAPENWQQRSE--DFDLVITCEERCFDAICEDLYARGPSLNQCVFMINVDIKDTPEDAIAGAKAILELVDVL  163 (197)
T ss_pred             HHhcchhhhCchhhhhccc--cccEEEEehHHHHHHHHHHHHhcCccccccEEEEEeeccCChhhhhhhHHHHHHHHHHH
Confidence            9999999999999999987  89999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhh-----hHHHHHhhhhcccce
Q 029616          162 CLLLF-----FIVSLVYHLKHHCTF  181 (190)
Q Consensus       162 ~~~~~-----~~~~~~~~~~~~~~~  181 (190)
                      .+.-+     +|.||..-|..|-..
T Consensus       164 ~~~~e~lE~~~~sil~~~qsnh~~l  188 (197)
T COG5211         164 AKEEERLEYAVDSILRRYQSNHKGL  188 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            66543     488998888877543

>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]

Probab=97.32  E-value=0.0014  Score=52.45  Aligned_cols=109  Identities=23%  Similarity=0.326  Sum_probs=70.1

Q ss_pred             CCceEEEEccCCCCcchHHHHhHHhC---CCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcC
Q 029616            1 MKYRYAMVCSSNQNRSMEAHYLLKRH---GFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNG   77 (190)
Q Consensus         1 ~~l~~AvVCaSN~NRSMEAH~~L~k~---Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NG   77 (190)
                      +..||.+||..|-=||=-|-.++++.   ++.|.|.|||+   .||..++.         +.  -+        --.+.|
T Consensus         1 ~~~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~---~~g~~~~~---------~a--~~--------vl~e~G   58 (139)
T COG0394           1 MMMKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGG---HPGEPPDP---------RA--VE--------VLAEHG   58 (139)
T ss_pred             CCceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCC---CCCCCCCH---------HH--HH--------HHHHcC
Confidence            46799999999999999999999865   79999999999   89988773         11  01        112233


Q ss_pred             chhhhhcccCCC-CCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEEEEeeccCCH
Q 029616           78 ILPMLKRNIGVK-AAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNH  144 (190)
Q Consensus        78 lL~MLdRNr~IK-~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVINvDIkDnh  144 (190)
                      |        .+. ..|.-|-+..- ..||+|||-++.-...++.-.    +.....+..+.-||.|-.
T Consensus        59 i--------d~~~~~~k~i~~~~~-~~~DlIitmd~~~~~~~~~~~----p~~~~~~~~~~~~v~DP~  113 (139)
T COG0394          59 I--------DISGHRSKQLTEEDF-DEFDLIITMDESNAADLCPLA----PGNTLLLEYEHWEVPDPY  113 (139)
T ss_pred             C--------CcCCccCccCchhhh-hhCCEEEEeChHHHhhHhhcC----ccccccccccCCCCCCCC
Confidence            2        233 23444433221 259999999876655554422    111133444457888865

>PRK10126 tyrosine phosphatase; Provisional

Probab=95.82  E-value=0.011  Score=46.66  Aligned_cols=92  Identities=22%  Similarity=0.315  Sum_probs=61.1

Q ss_pred             CCceEEEEccCCCCcchHHHHhHHhC--CCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcCc
Q 029616            1 MKYRYAMVCSSNQNRSMEAHYLLKRH--GFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGI   78 (190)
Q Consensus         1 ~~l~~AvVCaSN~NRSMEAH~~L~k~--Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NGl   78 (190)
                      |..||-.||..|.-||=-|..+|++.  ++.|.|.||...   ||..++.           ..-.        .-++.||
T Consensus         1 ~~~~iLFVC~gN~cRSpmAEa~~~~~~~~~~v~SAG~~~~---~g~~~~~-----------~a~~--------~l~~~Gi   58 (147)
T PRK10126          1 MFNNILVVCVGNICRSPTAERLLQRYHPELKVESAGLGAL---VGKGADP-----------TAIS--------VAAEHQL   58 (147)
T ss_pred             CCCeEEEEcCCcHhHHHHHHHHHHHhcCCeEEEeeeccCC---CCCCCCH-----------HHHH--------HHHHcCC
Confidence            34689999999999999999999974  589999999664   7765542           1111        2233343


Q ss_pred             hhhhhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHH
Q 029616           79 LPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDL  122 (190)
Q Consensus        79 L~MLdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl  122 (190)
                      = + .     .-.|.+|.+..- ..||+|||-++.-.+.++...
T Consensus        59 d-~-~-----~h~sr~lt~~~~-~~~DlIl~Md~~~~~~l~~~~   94 (147)
T PRK10126         59 S-L-E-----GHCARQISRRLC-RNYDLILTMEKRHIERLCEMA   94 (147)
T ss_pred             C-c-C-----CCccccCCHHHh-ccCCEEEECCHHHHHHHHHhc
Confidence            1 1 1     123445544321 249999999988888877654

>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=95.76  E-value=0.011  Score=45.17  Aligned_cols=107  Identities=21%  Similarity=0.370  Sum_probs=67.6

Q ss_pred             EEEEccCCCCcchHHHHhHHhC-------CCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcC
Q 029616            5 YAMVCSSNQNRSMEAHYLLKRH-------GFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNG   77 (190)
Q Consensus         5 ~AvVCaSN~NRSMEAH~~L~k~-------Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NG   77 (190)
                      |..||..|.=||--|+.+|++.       ++.|.|-||...   ||..++           ...-+-|        ++.|
T Consensus         1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~---~~~~~~-----------~~a~~~l--------~~~g   58 (138)
T PF01451_consen    1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW---PGEPVD-----------PRAIAVL--------KEHG   58 (138)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST---TTSSST-----------HHHHHHH--------HHTT
T ss_pred             CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc---cccccc-----------chHHHHH--------HHhC
Confidence            5689999999999999999876       889999999865   776544           2222222        3344


Q ss_pred             chhhhhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEEE--EeeccCCH
Q 029616           78 ILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVI--NLEVKDNH  144 (190)
Q Consensus        78 lL~MLdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVI--NvDIkDnh  144 (190)
                      + ++ ..     ..|..+-+.. -..||+|||.++.-++.+.+.+-.   .....|+.+  +-||.|-.
T Consensus        59 i-d~-~~-----~~s~~l~~~~-~~~~D~Ii~m~~~~~~~~~~~~~~---~~~~kv~~l~~~~~I~DP~  116 (138)
T PF01451_consen   59 I-DI-SG-----HRSRQLTEED-LDEADLIITMDDSHREELCPLFPG---DYRAKVFLLGEHWDIPDPY  116 (138)
T ss_dssp             S-SC-TT-----SBBCBGGHHH-HHHSSEEEESSHHHHHHHHHHHGT---TGGGCEEEGGGESSS-HHT
T ss_pred             C-Cc-cc-----ceeccccccc-cccCCEEEEccHHHhhhhhhhcch---hhhhhheeccccCcCCCCC
Confidence            3 21 11     2233333221 114999999999988888776665   122223333  77888744

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....

>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional

Probab=95.31  E-value=0.023  Score=45.09  Aligned_cols=90  Identities=18%  Similarity=0.299  Sum_probs=60.4

Q ss_pred             ceEEEEccCCCCcchHHHHhHHhC--CCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcCchh
Q 029616            3 YRYAMVCSSNQNRSMEAHYLLKRH--GFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILP   80 (190)
Q Consensus         3 l~~AvVCaSN~NRSMEAH~~L~k~--Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NGlL~   80 (190)
                      .||-+||..|.-||=-|..+|++.  ++.|.|-||...   ||..++ |+          .        .+.-++.|| +
T Consensus         3 ~~ILfVC~gN~cRSpmAEa~~~~~~~~~~v~SaG~~~~---~g~~~~-~~----------a--------~~~l~~~Gi-d   59 (144)
T PRK11391          3 NSILVVCTGNICRSPIGERLLRKRLPGVKVKSAGVHGL---VKHPAD-AT----------A--------ADVAANHGV-S   59 (144)
T ss_pred             CeEEEEcCCcHhHHHHHHHHHHHhcCCeEEEcccccCC---CCCCCC-HH----------H--------HHHHHHcCC-C
Confidence            589999999999999999999974  689999999753   665544 11          1        123344554 1


Q ss_pred             hhhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHH
Q 029616           81 MLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDL  122 (190)
Q Consensus        81 MLdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl  122 (190)
                      + ..     -.|..+.+..- ..||+|||-++..++.+.+..
T Consensus        60 ~-~~-----h~s~~lt~~~~-~~~DlIl~M~~~~~~~l~~~~   94 (144)
T PRK11391         60 L-EG-----HAGRKLTAEMA-RNYDLILAMESEHIAQVTAIA   94 (144)
T ss_pred             c-CC-----CccCcCCHHHH-hhCCEEEECCHHHHHHHHHHC
Confidence            1 11     12333322211 149999999999999887764

>smart00226 LMWPc Low molecular weight phosphatase family

Probab=93.32  E-value=0.069  Score=40.97  Aligned_cols=86  Identities=24%  Similarity=0.358  Sum_probs=56.8

Q ss_pred             EEEccCCCCcchHHHHhHHhC---CCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcCchhhh
Q 029616            6 AMVCSSNQNRSMEAHYLLKRH---GFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPML   82 (190)
Q Consensus         6 AvVCaSN~NRSMEAH~~L~k~---Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NGlL~ML   82 (190)
                      -.||..|.-||=-|..+|++.   ++.|.|-||...   ||..++.           ..-        +.-++.||=  +
T Consensus         2 LFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~---~g~~~~~-----------~a~--------~~l~~~Gid--~   57 (140)
T smart00226        2 LFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW---VGGGADP-----------RAV--------EVLKEHGIA--L   57 (140)
T ss_pred             EEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC---CCCCCCH-----------HHH--------HHHHHcCcC--c
Confidence            479999999999999999864   388999998754   7765441           111        234556762  2


Q ss_pred             hcccCCCCCccccccccCCCcccEEEecccchHHHHHHHH
Q 029616           83 KRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDL  122 (190)
Q Consensus        83 dRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl  122 (190)
                      ..-++ +..++-+    +  .+|+|||-++...+.++..+
T Consensus        58 ~~~~~-~l~~~~~----~--~~DlIv~m~~~~~~~~~~~~   90 (140)
T smart00226       58 SHHAS-QLTSSDF----K--NADLVLAMDHSHLRNICRLK   90 (140)
T ss_pred             cceec-cCCHHHH----H--hCCEEEEeCHHHHHHHHHHc
Confidence            22222 3333322    1  49999999998877776654

>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type

Probab=90.83  E-value=0.17  Score=38.91  Aligned_cols=34  Identities=29%  Similarity=0.320  Sum_probs=29.3

Q ss_pred             ceEEEEccCCCCcchHHHHhHHhC---CCCeeeecCC
Q 029616            3 YRYAMVCSSNQNRSMEAHYLLKRH---GFDVSSYGTG   36 (190)
Q Consensus         3 l~~AvVCaSN~NRSMEAH~~L~k~---Gf~V~SfGTG   36 (190)
                      .|+..||..|--||--|..+|++.   ++.|.|.||.
T Consensus         1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~   37 (126)
T TIGR02689         1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE   37 (126)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence            478899999999999999999974   3778888886

Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.

>PRK13530 arsenate reductase; Provisional

Probab=89.54  E-value=0.34  Score=37.97  Aligned_cols=35  Identities=29%  Similarity=0.298  Sum_probs=29.6

Q ss_pred             CceEEEEccCCCCcchHHHHhHHh---CCCCeeeecCC
Q 029616            2 KYRYAMVCSSNQNRSMEAHYLLKR---HGFDVSSYGTG   36 (190)
Q Consensus         2 ~l~~AvVCaSN~NRSMEAH~~L~k---~Gf~V~SfGTG   36 (190)
                      +.++-.||..|--||=-|..+|++   .++.|.|-|+.
T Consensus         3 ~~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~   40 (133)
T PRK13530          3 KKTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIE   40 (133)
T ss_pred             CCEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCC
Confidence            678999999999999999999986   34777888874

>cd00115 LMWPc Substituted updates: Aug 22, 2001

Probab=88.21  E-value=0.42  Score=36.86  Aligned_cols=34  Identities=29%  Similarity=0.426  Sum_probs=29.3

Q ss_pred             ceEEEEccCCCCcchHHHHhHHhC----CCCeeeecCC
Q 029616            3 YRYAMVCSSNQNRSMEAHYLLKRH----GFDVSSYGTG   36 (190)
Q Consensus         3 l~~AvVCaSN~NRSMEAH~~L~k~----Gf~V~SfGTG   36 (190)
                      +||-.||..|.-||=-|..+|++.    ++.|.|-|+-
T Consensus         1 ~~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~   38 (141)
T cd00115           1 KKVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTS   38 (141)
T ss_pred             CeEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCC
Confidence            378899999999999999999974    6788888874

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=86.89  E-value=1  Score=32.18  Aligned_cols=32  Identities=25%  Similarity=0.473  Sum_probs=26.6

Q ss_pred             eEEEEccCCCCcchHHHHhHHhCCCCeeeecCC
Q 029616            4 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTG   36 (190)
Q Consensus         4 ~~AvVCaSN~NRSMEAH~~L~k~Gf~V~SfGTG   36 (190)
                      .+.++|++- +||..|=..|++.||+|..+--|
T Consensus        63 ~ivv~C~~G-~rs~~aa~~L~~~G~~~~~l~GG   94 (100)
T cd01523          63 EVTVICAKE-GSSQFVAELLAERGYDVDYLAGG   94 (100)
T ss_pred             eEEEEcCCC-CcHHHHHHHHHHcCceeEEeCCc
Confidence            588999875 69999999999999997766443

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>TIGR03746 conj_TIGR03746 integrating conjugative element protein, PFL_4703 family

Probab=83.47  E-value=1  Score=39.21  Aligned_cols=96  Identities=24%  Similarity=0.271  Sum_probs=68.9

Q ss_pred             CCceecCCCCCCCCccccCC-CCHHHHH-------------------------HHHhhcChHHHHhcCchhhhhcccCCC
Q 029616           36 GAHVKLPGPSLREPNVYEFG-TPYKQMF-------------------------DDLRRKDPELYKRNGILPMLKRNIGVK   89 (190)
Q Consensus        36 Gs~VkLPGps~dkPNvY~Fg-T~Y~~Iy-------------------------~dL~~kD~~lY~~NGlL~MLdRNr~IK   89 (190)
                      ||..|.  -.+..+|||.|+ +-+++|-                         +.+..||-+++++||=|  -+|.|.+=
T Consensus        51 Gstr~~--~eVP~~~VYaFa~yI~QQlNrW~~~Ge~dY~~ni~~l~~YlTP~c~~~L~~d~~~R~~~geL--r~R~R~vy  126 (202)
T TIGR03746        51 GSTRKW--WEVPPENVYAFAFYIFQQLNRWPKDGEQDYGANIFRLSPYLTPSCRAFLQQDYELRRSNGEL--RQRVRGVY  126 (202)
T ss_pred             CCccCc--ccCCchhhhhhHHHHHHHHhhccccchHHHHHHHHhcccccCHHHHHHHHHHHHHHhhcchH--hhheeeeE
Confidence            666555  556788999997 4555553                         56778888889999955  69999999


Q ss_pred             CCcccccccc-------CCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEEEEeec
Q 029616           90 AAPQRWQDNA-------LDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEV  140 (190)
Q Consensus        90 ~~PERfQ~~~-------~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVINvDI  140 (190)
                      +=|-|+-+..       +.=..-+.++-+|+.=.++|.+-.-|     -|++|+-+|+
T Consensus       127 EIpgrgy~~~rV~~~s~d~W~V~LDl~~~E~~~~e~VK~~~vR-----YpL~VVR~d~  179 (202)
T TIGR03746       127 EIPGRGYSENRVIVHSDDSWTVNLDLSVDEYYGGEPVKRALVR-----YPLRVVRWDV  179 (202)
T ss_pred             ecCCCCCCccceEEeCCCceEEEEEEEEEeeeCCcchhhhhcc-----cceEEEEecC
Confidence            9999985432       11124455666788777777766654     7999998887

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. The function is unknown.

>PLN02160 thiosulfate sulfurtransferase

Probab=83.40  E-value=1.3  Score=34.65  Aligned_cols=30  Identities=30%  Similarity=0.447  Sum_probs=25.7

Q ss_pred             eEEEEccCCCCcchHHHHhHHhCCC-Ceeeec
Q 029616            4 RYAMVCSSNQNRSMEAHYLLKRHGF-DVSSYG   34 (190)
Q Consensus         4 ~~AvVCaSN~NRSMEAH~~L~k~Gf-~V~SfG   34 (190)
                      .+.++|.|. +||..|=..|.+.|| +|..+.
T Consensus        83 ~IivyC~sG-~RS~~Aa~~L~~~G~~~v~~l~  113 (136)
T PLN02160         83 DILVGCQSG-ARSLKATTELVAAGYKKVRNKG  113 (136)
T ss_pred             cEEEECCCc-HHHHHHHHHHHHcCCCCeeecC
Confidence            588999866 999999999999999 577764

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=80.40  E-value=2.4  Score=29.98  Aligned_cols=28  Identities=32%  Similarity=0.320  Sum_probs=24.5

Q ss_pred             ceEEEEccCCCCcchHHHHhHHhCCCCee
Q 029616            3 YRYAMVCSSNQNRSMEAHYLLKRHGFDVS   31 (190)
Q Consensus         3 l~~AvVCaSN~NRSMEAH~~L~k~Gf~V~   31 (190)
                      ..+.|+|++ .+||..|=..|+++||...
T Consensus        62 ~~ivv~C~~-G~rS~~aa~~L~~~G~~~~   89 (110)
T COG0607          62 DPIVVYCAS-GVRSAAAAAALKLAGFTNV   89 (110)
T ss_pred             CeEEEEeCC-CCChHHHHHHHHHcCCccc
Confidence            468899987 5899999999999999766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
3o2s_B	214	Crystal Structure Of The Human Symplekin-Ssu72 Comp		1e-47
3o2q_B	214	Crystal Structure Of The Human Symplekin-Ssu72-Ctd		2e-46
3omw_A	190	Crystal Structure Of Ssu72, An Essential Eukaryotic		4e-37
3p9y_A	198	Crystal Structure Of The Drosophila Melanogaster Ss		4e-35
3fdf_A	195	Crystal Structure Of The Serine Phosphatase Of Rna		9e-35

>pdb|3O2S|B Chain B, Crystal Structure Of The Human Symplekin-Ssu72 Complex Length = 214

Iteration: 1
 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/156 (58%), Positives = 117/156 (75%), Gaps = 2/156 (1%)
Query: 4   RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
           R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++
Sbjct: 27  RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 86
Query: 64  DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D VVEDLN
Sbjct: 87  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 144
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
           +REQ   + V V+N++++DNHEEA +G  L  +LCQ
Sbjct: 145 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQ 180

>pdb|3O2Q|B Chain B, Crystal Structure Of The Human Symplekin-Ssu72-Ctd Phosphopeptide Complex Length = 214

Iteration: 1
 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/156 (57%), Positives = 116/156 (74%), Gaps = 2/156 (1%)
Query: 4   RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFD 63
           R A+V SSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++
Sbjct: 27  RVAVVSSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYN 86
Query: 64  DLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN 123
           DL RKD ELY +NGIL ML RN  +K  P+R+Q N  D  FD++ T EE+V+D VVEDLN
Sbjct: 87  DLLRKDKELYTQNGILHMLDRNKRIKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLN 144
Query: 124 TREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
           +REQ   + V V+N++++DNHEEA +G  L  +LCQ
Sbjct: 145 SREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQ 180

>pdb|3OMW|A Chain A, Crystal Structure Of Ssu72, An Essential Eukaryotic Phosphatase Specific For The C-Terminal Domain Of Rna Polymerase Ii Length = 190

Iteration: 1
 Score =  150 bits (379), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 76/158 (48%), Positives = 102/158 (64%), Gaps = 2/158 (1%)
Query: 2   KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQM 61
           K   A+VCSSN NRSMEAH  L + GF+V SYGTG  VKLPG +  +PNVYEFGT Y+ +
Sbjct: 1   KLAVAVVCSSNMNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAFDKPNVYEFGTKYEDI 60
Query: 62  FDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVED 121
           + DL  KD E Y +NG+L ML RN  +K  P+R+QD      FDI+ T EE+V+D VV  
Sbjct: 61  YRDLESKDKEFYTQNGLLHMLDRNRRIKKCPERFQDTK--EQFDIIVTVEERVYDLVVMH 118
Query: 122 LNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
           + + E    + V V+N++V DN E+A +G  +  D+  
Sbjct: 119 MESMESVDNRPVHVLNVDVVDNAEDALMGAFVITDMIN 156

>pdb|3P9Y|A Chain A, Crystal Structure Of The Drosophila Melanogaster Ssu72-Pctd Complex Length = 198

Iteration: 1
 Score =  143 bits (361), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/158 (46%), Positives = 101/158 (63%), Gaps = 2/158 (1%)
Query: 2   KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQM 61
           K   A+V SSN NRSMEAH  L + GF+V SYGTG  VKLPG +  +PNVYEFGT Y+ +
Sbjct: 9   KLAVAVVDSSNMNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAFDKPNVYEFGTKYEDI 68
Query: 62  FDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVED 121
           + DL  KD E Y +NG+L ML RN  +K  P+R+QD      FDI+ T EE+V+D VV  
Sbjct: 69  YRDLESKDKEFYTQNGLLHMLDRNRRIKKCPERFQDTK--EQFDIIVTVEERVYDLVVMH 126
Query: 122 LNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQ 159
           + + E    + V V+N++V +N E+A +G  +  D+  
Sbjct: 127 MESMESVDNRPVHVLNVDVVNNAEDALMGAFVITDMIN 164

>pdb|3FDF|A Chain A, Crystal Structure Of The Serine Phosphatase Of Rna Polymerase Ii Ctd (Ssu72 Superfamily) From Drosophila Melanogaster. Orthorhombic Crystal Form. Northeast Structural Genomics Consortium Target Fr253. Length = 195

Iteration: 1
 Score =  142 bits (359), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 97/155 (62%), Gaps = 2/155 (1%)
Query: 2   KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQM 61
           K   A+VCSSN NRS EAH  L + GF+V SYGTG  VKLPG +  +PNVYEFGT Y+ +
Sbjct: 6   KLAVAVVCSSNXNRSXEAHNFLAKKGFNVRSYGTGERVKLPGXAFDKPNVYEFGTKYEDI 65
Query: 62  FDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVED 121
           + DL  KD E Y +NG+L  L RN  +K  P+R+QD      FDI+ T EE+V+D VV  
Sbjct: 66  YRDLESKDKEFYTQNGLLHXLDRNRRIKKCPERFQDTK--EQFDIIVTVEERVYDLVVXH 123
Query: 122 LNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFD 156
             + E    + V V+N++V DN E+A  G  +  D
Sbjct: 124 XESXESVDNRPVHVLNVDVVDNAEDALXGAFVITD 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
3p9y_A	198	CG14216, LD40846P; phosphatase, CIS proline, LMW P	3e-91
3o2q_B	214	RNA polymerase II subunit A C-terminal domain PHO	2e-90
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A Length = 198

 Score =  263 bits (675), Expect = 3e-91
 Identities = 74/160 (46%), Positives = 102/160 (63%), Gaps = 2/160 (1%)

Query: 2   KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQM 61
           K   A+V SSN NRSMEAH  L + GF+V SYGTG  VKLPG +  +PNVYEFGT Y+ +
Sbjct: 9   KLAVAVVDSSNMNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAFDKPNVYEFGTKYEDI 68

Query: 62  FDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVED 121
           + DL  KD E Y +NG+L ML RN  +K  P+R+QD      FDI+ T EE+V+D VV  
Sbjct: 69  YRDLESKDKEFYTQNGLLHMLDRNRRIKKCPERFQDT--KEQFDIIVTVEERVYDLVVMH 126

Query: 122 LNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV 161
           + + E    + V V+N++V +N E+A +G  +  D+   +
Sbjct: 127 MESMESVDNRPVHVLNVDVVNNAEDALMGAFVITDMINMM 166

>3o2q_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, scaffold, phosphatase, polymerase II CTD, CIS-P hydrolase; HET: SEP; 2.40A {Homo sapiens} PDB: 3o2s_B Length = 214

 Score =  262 bits (672), Expect = 2e-90
 Identities = 88/160 (55%), Positives = 116/160 (72%), Gaps = 2/160 (1%)

Query: 2   KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQM 61
             R A+V SSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM
Sbjct: 25  PLRVAVVSSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQM 84

Query: 62  FDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVED 121
           ++DL RKD ELY +NGIL ML RN  +K  P+R+Q+      FD++ T EE+V+D VVED
Sbjct: 85  YNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNC--KDLFDLILTCEERVYDQVVED 142

Query: 122 LNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV 161
           LN+REQ   + V V+N++++DNHEEA +G  L  +LCQ +
Sbjct: 143 LNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCI 182

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 21/162 (12%), Positives = 53/162 (32%), Gaps = 35/162 (21%)

Query: 46  LREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPMLKRNIGVKAAPQRWQDNALDGSFD 105
           +   +    GT    +F  L  K  E+ ++  +  +L+ N     +P + +         
Sbjct: 55  IMSKDAVS-GTLR--LFWTLLSKQEEMVQK-FVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 106 IVFTFEEKVFDT--VVEDLN-TREQPF--------------------M----KTVLVINL 138
           +     +++++   V    N +R QP+                    +    KT + +++
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 139 EVKDNHEEAAIGGR---LTFDLCQEVCLLLFFIVSLVYHLKH 177
                  +  +  +   L    C     +L  +  L+Y +  
Sbjct: 171 -CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
3p9y_A	198	CG14216, LD40846P; phosphatase, CIS proline, LMW P	100.0
4h3k_B	214	RNA polymerase II subunit A C-terminal domain PHO	100.0
4etn_A	184	LMPTP, low molecular weight protein-tyrosine-phosp	96.58
4egs_A	180	Ribose 5-phosphate isomerase RPIB; tyrosine phosph	96.55
1d1q_A	161	Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-be	96.35
2wmy_A	150	WZB, putative acid phosphatase WZB; hydrolase; 2.2	96.14
3rof_A	158	Low molecular weight protein-tyrosine-phosphatase;	95.91
2fek_A	167	Low molecular weight protein-tyrosine- phosphatase	95.77
2wja_A	168	Putative acid phosphatase WZB; hydrolase; 2.50A {E	95.49
1y1l_A	124	Arsenate reductase (ARSC); detoxification, cadmium	95.11
1p8a_A	146	Protein tyrosine phosphatase; hydrolase; NMR {Trit	94.5
1jf8_A	131	Arsenate reductase; ptpase I fold, P-loop, sulfini	94.48
1u2p_A	163	Ptpase, low molecular weight protein-tyrosine- pho	94.36
2gi4_A	156	Possible phosphotyrosine protein phosphatase; low	94.11
3rh0_A	148	Arsenate reductase; oxidoreductase; 1.72A {Coryneb	94.08
1jl3_A	139	Arsenate reductase; alpha-beta fold, PTP-loop, oxi	94.05
2l17_A	134	Synarsc, arsenate reductase; alpha/beta sandwich,	93.77
3n8i_A	157	Low molecular weight phosphotyrosine protein PHOS;	93.54
4etm_A	173	LMPTP, low molecular weight protein-tyrosine-phosp	93.37
3t38_A	213	Arsenate reductase; low molecular weight tyrosine	93.09
2cwd_A	161	Low molecular weight phosphotyrosine protein PHOS;	92.88
3jvi_A	161	Protein tyrosine phosphatase; niaid, ssgcid, seatt	92.32
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	87.08
2jtq_A	85	Phage shock protein E; solution structure rhodanes	87.03
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	86.29
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	85.82
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	85.57
1vee_A	134	Proline-rich protein family; hypothetical protein,	84.84
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	84.07
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	83.8
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	80.82

>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A

Probab=100.00  E-value=3.4e-101  Score=646.88  Aligned_cols=175  Identities=42%  Similarity=0.655  Sum_probs=169.4

Q ss_pred             CceEEEEccCCCCcchHHHHhHHhCCCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcCchhh
Q 029616            2 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPM   81 (190)
Q Consensus         2 ~l~~AvVCaSN~NRSMEAH~~L~k~Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NGlL~M   81 (190)
                      ++|||||||||||||||||++|+++||+|+|||||++|||||||+|+||||+|||||++||+||.+||++||++||||+|
T Consensus         9 ~l~~avVCaSN~NRSMEaH~~L~k~G~~V~SfGTGs~VrLPGps~d~PNvY~FgT~Y~~iy~dL~~kd~~lY~~NGiL~M   88 (198)
T 3p9y_A            9 KLAVAVVDSSNMNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAFDKPNVYEFGTKYEDIYRDLESKDKEFYTQNGLLHM   88 (198)
T ss_dssp             CCEEEEEESSSSSHHHHHHHHHHHTTCEEEEEECSSSEEECCSSTTCCEEECTTCCHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             CceEEEEcCCCCcccHHHHHHHHhCCCceeecCCCceeEcCCCCCCCCCccCCCCcHHHHHHHHHHhhHHHHHHcCcHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEEEEeeccCCHHHHHhhHHHHHHHHHHH
Q 029616           82 LKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV  161 (190)
Q Consensus        82 LdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVINvDIkDnhEeA~~Ga~~ileLc~~l  161 (190)
                      |||||+||++|||||++.+  .|||||||||||||+|||||++|++.++|||||||||||||||||++||++|||||++|
T Consensus        89 LdRNr~iK~~PERfQ~~~~--~fDvIiTcEERvfD~VvedL~~R~~~~~~pVHViNvDIkDn~EeA~~Ga~~ileL~~~l  166 (198)
T 3p9y_A           89 LDRNRRIKKCPERFQDTKE--QFDIIVTVEERVYDLVVMHMESMESVDNRPVHVLNVDVVNNAEDALMGAFVITDMINMM  166 (198)
T ss_dssp             HHHHHHHCSSCCBGGGCCC--CCSEEEESSHHHHHHHHHHHHTSCCSSCCEEEEEECCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCccccCCccchhccCC--CcCEEEEeechhHHHHHHHHHhcccCcCceEEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999976  89999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhhh----HHHHHhhhhcc
Q 029616          162 CLLLFF----IVSLVYHLKHH  178 (190)
Q Consensus       162 ~~~~~~----~~~~~~~~~~~  178 (190)
                      +++.|+    |.+|...+++|
T Consensus       167 ~~~~d~e~~i~~il~~fe~~~  187 (198)
T 3p9y_A          167 AKSTDLDNDIDELIQEFEERR  187 (198)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHchhHHHHHHHHHHHHHHhc
Confidence            999988    56777777644

>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B

Probab=100.00  E-value=4.3e-100  Score=646.00  Aligned_cols=175  Identities=51%  Similarity=0.786  Sum_probs=169.6

Q ss_pred             CceEEEEccCCCCcchHHHHhHHhCCCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcCchhh
Q 029616            2 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPM   81 (190)
Q Consensus         2 ~l~~AvVCaSN~NRSMEAH~~L~k~Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NGlL~M   81 (190)
                      +||||||||||||||||||++|+++||+|+|||||++|||||||+++||||+|||||++||+||.+||++||++||||+|
T Consensus        25 ~Lr~avVCaSN~NRSMEAH~~L~k~Gf~V~SfGTGs~VkLPGps~d~PnvY~FgT~Y~~iy~dL~~kd~~lY~~NGlL~M  104 (214)
T 4h3k_B           25 PLRVAVVSSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHM  104 (214)
T ss_dssp             -CEEEEEESSSSSHHHHHHHHHHHTTCEEEEEECSSSEEECCSSTTCCEEECTTSCHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             CCeEEEECCCCcchhHHHHHHHHHCCCceEeecCCCccCCCCCCCCCCCccCCCCCHHHHHHHHHhHCHHHHHHcCcHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEEEEeeccCCHHHHHhhHHHHHHHHHHH
Q 029616           82 LKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEAAIGGRLTFDLCQEV  161 (190)
Q Consensus        82 LdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVINvDIkDnhEeA~~Ga~~ileLc~~l  161 (190)
                      ||||++||++|||||++.+  .|||||||||||||+|||||++|++.+++||||||||||||||||++||++|||||++|
T Consensus       105 LdRN~~iK~~PER~Q~~~~--~fDvViTcEERvfD~Vvedl~~R~~~~~~pvHVINvdIkDn~EeA~~Ga~~ileL~~~l  182 (214)
T 4h3k_B          105 LDRNKRIKPRPERFQNCKD--LFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCI  182 (214)
T ss_dssp             HHHHHTTCSSCCBGGGCCC--CCSEEEESSHHHHHHHHHHHHHSCCSSCCEEEEEEECCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCccccCCChhhhccCC--CccEEEEccchhHHHHHHHHHhcCCCCCceEEEEEecccCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987  89999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhhh----HHHHHhhhhcc
Q 029616          162 CLLLFF----IVSLVYHLKHH  178 (190)
Q Consensus       162 ~~~~~~----~~~~~~~~~~~  178 (190)
                      +++.|+    |.+|...++.|
T Consensus       183 e~~~D~e~~id~il~~fe~k~  203 (214)
T 4h3k_B          183 QHTEDMENEIDELLQEFEEKS  203 (214)
T ss_dssp             HHSSCHHHHHHHHHHHHHHHH
T ss_pred             HhcccHHHHHHHHHHHHHHhc
Confidence            999997    66777777765

>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.10A {Bacillus subtilis} PDB: 4eti_A 1zgg_A

Probab=96.58  E-value=0.0018  Score=52.68  Aligned_cols=108  Identities=19%  Similarity=0.270  Sum_probs=68.2

Q ss_pred             CceEEEEccCCCCcchHHHHhHHhC------CCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHh
Q 029616            2 KYRYAMVCSSNQNRSMEAHYLLKRH------GFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKR   75 (190)
Q Consensus         2 ~l~~AvVCaSN~NRSMEAH~~L~k~------Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~   75 (190)
                      ++||-+||..|.=||=-|..+|++.      ++.|.|-||+..   ||..++.           ..-+        .-.+
T Consensus        34 ~~~VLFVC~gNiCRSpmAEai~r~~~~~~g~~~~v~SAGt~~~---~G~~~dp-----------~a~~--------vl~e   91 (184)
T 4etn_A           34 SMDIIFVCTGNTSRSPMAEALFKSIAEREGLNVNVRSAGVFAS---PNGKATP-----------HAVE--------ALFE   91 (184)
T ss_dssp             CEEEEEEESSSSSHHHHHHHHHHHHHHHHTCCEEEEEEETTCC---TTCBCCH-----------HHHH--------HHHH
T ss_pred             CCEEEEECCCchhHHHHHHHHHHHHHHhcCCcEEEEeeecCCc---CCCCCCH-----------HHHH--------HHHH
Confidence            4689999999999999999988864      789999999873   5655442           1111        2244


Q ss_pred             cCchhhhhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEEE-------EeeccCCH
Q 029616           76 NGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVI-------NLEVKDNH  144 (190)
Q Consensus        76 NGlL~MLdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVI-------NvDIkDnh  144 (190)
                      .||=        +...|..|.+..- ..||+|||.++.-.+.+.+..-.    ....|+.+       .-||.|-.
T Consensus        92 ~Gid--------ishrar~lt~~d~-~~~DlIltMd~~~~~~l~~~~P~----~~~Kv~lL~~~~~~~~~dVpDPy  154 (184)
T 4etn_A           92 KHIA--------LNHVSSPLTEELM-ESADLVLAMTHQHKQIIASQFGR----YRDKVFTLKEYVTGSHGDVLDPF  154 (184)
T ss_dssp             TTCC--------CCCBCCBCCHHHH-HHCSEEEESSHHHHHHHHHHCGG----GGGGEEEHHHHHHSSCCCCCCCT
T ss_pred             cCCC--------chhccCcCCHHHc-CCCCEEEEcCcHHHHHHHHHCCC----ccceEEEhhhhccCCCCccCCCC
Confidence            5651        1123333432211 14999999998887777665432    11223332       56888875

>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis}

Probab=96.55  E-value=0.0061  Score=48.96  Aligned_cols=37  Identities=27%  Similarity=0.329  Sum_probs=31.4

Q ss_pred             CceEEEEccCCCCcchHHHHhHHh----C--CCCeeeecCCCc
Q 029616            2 KYRYAMVCSSNQNRSMEAHYLLKR----H--GFDVSSYGTGAH   38 (190)
Q Consensus         2 ~l~~AvVCaSN~NRSMEAH~~L~k----~--Gf~V~SfGTGs~   38 (190)
                      ++||-+||.-|--||=-|..+|+.    .  .+.|.|.||+..
T Consensus        34 ~mkVLFVC~GNiCRSpmAE~l~r~~~~~~g~~~~v~SAGt~~~   76 (180)
T 4egs_A           34 SMRVLFVCTGNTCRSPMAEGIFNAKSKALGKDWEAKSAGVFAP   76 (180)
T ss_dssp             CCEEEEEESSSSSHHHHHHHHHHHHHHHTTCCCEEEEEETTCC
T ss_pred             CeEEEEEeCCCcccCHHHHHHHHHHHHhcCCceEEEEeeecCc
Confidence            579999999999999999998863    2  478999999764

>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*

Probab=96.35  E-value=0.0056  Score=47.90  Aligned_cols=111  Identities=16%  Similarity=0.231  Sum_probs=67.3

Q ss_pred             CceEEEEccCCCCcchHHHHhHHhC----C-----CCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHH
Q 029616            2 KYRYAMVCSSNQNRSMEAHYLLKRH----G-----FDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPEL   72 (190)
Q Consensus         2 ~l~~AvVCaSN~NRSMEAH~~L~k~----G-----f~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~l   72 (190)
                      +.+|-.||..|.=||--|..+|++.    |     +.|.|-||+..  .||..++.           ..-+        .
T Consensus         7 ~~~VLFVCtgN~cRSpmAEal~~~~~~~~gl~~~~~~v~SAGt~~~--~~g~~~~p-----------~a~~--------~   65 (161)
T 1d1q_A            7 KISVAFIALGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNY--HVGESPDH-----------RTVS--------I   65 (161)
T ss_dssp             CEEEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEEESSCT--TBTCCCCH-----------HHHH--------H
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHHHHHHcCCCCCeEEEEeccccCC--cCCCCCCH-----------HHHH--------H
Confidence            4689999999999999999888753    3     77999999862  34544331           1112        2


Q ss_pred             HHhcCchhhhhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEEE----------EeeccC
Q 029616           73 YKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVI----------NLEVKD  142 (190)
Q Consensus        73 Y~~NGlL~MLdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVI----------NvDIkD  142 (190)
                      -.+.||=        +...|..|.+..- ..||+|||-++.-.+.+.+..-.   .....|+.+          .-||.|
T Consensus        66 l~~~Gid--------~s~~ar~l~~~~~-~~~DlIl~M~~~~~~~l~~~~p~---~~~~kv~~l~~~~~~~~~~~~~i~D  133 (161)
T 1d1q_A           66 CKQHGVK--------INHKGKQIKTKHF-DEYDYIIGMDESNINNLKKIQPE---GSKAKVCLFGDWNTNDGTVQTIIED  133 (161)
T ss_dssp             HHHTTCC--------CCCCBCBCCGGGG-GTCSEEEESSHHHHHHHHHHCCT---TCSCEEEEGGGGCCCSSSSCSSCCC
T ss_pred             HHHcCcC--------CCceEeECCHHHH-hhCCEEEEeCHHHHHHHHHHCCc---cchhhEEeHhhhcccccCCCCcCCC
Confidence            3445662        1123333433211 14999999988776666554321   122345553          248888


Q ss_pred             CHH
Q 029616          143 NHE  145 (190)
Q Consensus       143 nhE  145 (190)
                      -.-
T Consensus       134 P~~  136 (161)
T 1d1q_A          134 PWY  136 (161)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            863

>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia coli}

Probab=96.14  E-value=0.0073  Score=46.83  Aligned_cols=109  Identities=18%  Similarity=0.280  Sum_probs=70.0

Q ss_pred             ceEEEEccCCCCcchHHHHhHHh--CCCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcCchh
Q 029616            3 YRYAMVCSSNQNRSMEAHYLLKR--HGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILP   80 (190)
Q Consensus         3 l~~AvVCaSN~NRSMEAH~~L~k--~Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NGlL~   80 (190)
                      .+|-.||..|.=||=-|..+|++  .++.|.|-||+.   .||..++.         .  .-+        .-.+.||= 
T Consensus         9 ~~VLFVC~gN~cRSpmAEal~r~~~~~~~v~SAGt~~---~~g~~~~p---------~--a~~--------~l~e~Gid-   65 (150)
T 2wmy_A            9 DSILVICTGNICRSPIGERLLRRLLPSKKINSAGVGA---LVDHTADE---------S--AIR--------VAEKNGLC-   65 (150)
T ss_dssp             CEEEEEESSSSSHHHHHHHHHHHHCTTSEEEEEETTC---CTTCCCCH---------H--HHH--------HHHHTTCC-
T ss_pred             CEEEEEcCCchHHHHHHHHHHHHhcCCCEEEeccccC---CCCCCCCH---------H--HHH--------HHHHcCCC-
Confidence            48999999999999999999996  369999999998   58876552         1  111        22345551 


Q ss_pred             hhhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEE-EEe----eccCCHH
Q 029616           81 MLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLV-INL----EVKDNHE  145 (190)
Q Consensus        81 MLdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHV-INv----DIkDnhE  145 (190)
                      + .     ...|..|.+..- ..||+|||.++.-.+.++..+-.    ....|+. ...    ||.|-..
T Consensus        66 ~-~-----~~~ar~l~~~~~-~~~DlIi~m~~~~~~~l~~~~p~----~~~kv~~l~~~~~~~~i~DP~~  124 (150)
T 2wmy_A           66 L-K-----GHRGTKFTSALA-RQYDLLLVMEYSHLEQISRIAPE----ARGKTMLFGHWLDSKEIPDPYR  124 (150)
T ss_dssp             C-T-----TCCCCBCCHHHH-TTCSEEEESCHHHHHHHHHHCGG----GGGGEEETTTTSSSCCCCCCTT
T ss_pred             c-c-----CCcccCCCHHHh-ccCCEEEEcCHHHHHHHHHhCCC----ccceEeehHHhCCCCCCCCCCC
Confidence            1 1     123444543211 14999999999877777664432    1112332 233    8998754

>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}

Probab=95.91  E-value=0.016  Score=45.91  Aligned_cols=108  Identities=19%  Similarity=0.308  Sum_probs=65.7

Q ss_pred             ceEEEEccCCCCcchHHHHhHHhC----C---CCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHh
Q 029616            3 YRYAMVCSSNQNRSMEAHYLLKRH----G---FDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKR   75 (190)
Q Consensus         3 l~~AvVCaSN~NRSMEAH~~L~k~----G---f~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~   75 (190)
                      .+|-.||..|.=||--|..+|++.    |   +.|.|-||+..  -.|..++.           ..-+        .-.+
T Consensus         7 ~~vLFVC~gN~cRSpmAE~i~~~~~~~~gl~~~~v~SAGt~~~--~~G~~~~~-----------~a~~--------~l~~   65 (158)
T 3rof_A            7 VDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSW--NLGEPPHE-----------GTQK--------ILNK   65 (158)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHHHHTTCCSEEEEEEETTCC--STTCCCCH-----------HHHH--------HHHH
T ss_pred             CEEEEEeCCchhHHHHHHHHHHHHHHHcCCCCeEEEecccCCc--ccCCCCCH-----------HHHH--------HHHH
Confidence            589999999999999999888753    3   78999999852  11433331           1112        2234


Q ss_pred             cCchhhhhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEEE------E-eeccCCHH
Q 029616           76 NGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVI------N-LEVKDNHE  145 (190)
Q Consensus        76 NGlL~MLdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVI------N-vDIkDnhE  145 (190)
                      .|| .+ ..     ..|..+....   .||+|||.++.-.+.+..-.    +...+.||.+      . -||.|-.-
T Consensus        66 ~Gi-d~-~~-----~~ar~l~~~~---~~DlIi~Md~~~~~~l~~~~----p~~~~kv~~l~~~~~~~~~~VpDPyy  128 (158)
T 3rof_A           66 HNI-PF-DG-----MISELFEATD---DFDYIVAMDQSNVDNIKSIN----PNLKGQLFKLLEFSNMEESDVPDPYY  128 (158)
T ss_dssp             TTC-CC-TT-----CCCCBCCTTC---CCSEEEESSHHHHHHHHHHC----TTCCSEEEEGGGGCCSSCSSCCCHHH
T ss_pred             cCC-Cc-CC-----CcceECChhh---cCCEEEEcCHHHHHHHHHhc----CCCcCEEEEehhhccCCCCcCCCCCC
Confidence            454 11 10     1233333222   49999999988777665543    2222356654      2 68888864

>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12}

Probab=95.77  E-value=0.01  Score=47.28  Aligned_cols=109  Identities=22%  Similarity=0.293  Sum_probs=69.6

Q ss_pred             ceEEEEccCCCCcchHHHHhHHhC--CCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcCchh
Q 029616            3 YRYAMVCSSNQNRSMEAHYLLKRH--GFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILP   80 (190)
Q Consensus         3 l~~AvVCaSN~NRSMEAH~~L~k~--Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NGlL~   80 (190)
                      .+|-.||.-|.=||=-|..+|++.  ++.|.|-||+.   .||..++.         .  .-+        .-.+.||= 
T Consensus        23 ~~VLFVCtgN~cRSpmAEal~r~~~~~~~v~SAGt~~---~~g~~~~p---------~--a~~--------vl~e~Gid-   79 (167)
T 2fek_A           23 NNILVVCVGNICRSPTAERLLQRYHPELKVESAGLGA---LVGKGADP---------T--AIS--------VAAEHQLS-   79 (167)
T ss_dssp             CEEEEEESSSSSHHHHHHHHHHHHCTTCEEEEEETTC---CTTCCCCH---------H--HHH--------HHHHTTCC-
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHHhcCCeEEEeeecCC---CCCCCCCH---------H--HHH--------HHHHcCCC-
Confidence            489999999999999999999963  69999999998   68877552         1  111        22345551 


Q ss_pred             hhhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEE-EEe----eccCCHH
Q 029616           81 MLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLV-INL----EVKDNHE  145 (190)
Q Consensus        81 MLdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHV-INv----DIkDnhE  145 (190)
                      + .     ...|..|.+..- ..||+|||.++.-.+.++..+-.-   ..+ ++. ...    ||.|-..
T Consensus        80 ~-s-----~~~sr~l~~~~~-~~~DlIitM~~~~~~~l~~~~p~~---~~k-v~~l~~w~~~~~I~DP~~  138 (167)
T 2fek_A           80 L-E-----GHCARQISRRLC-RNYDLILTMEKRHIERLCEMAPEM---RGK-VMLFGHWDNECEIPDPYR  138 (167)
T ss_dssp             C-T-----TCCCCBCCHHHH-HHSSEEEESCHHHHHHHHHHCGGG---GGG-EEEGGGGTTTCCCCCCTT
T ss_pred             c-c-----CCcCccCCHHHh-ccCCEEEEcCHHHHHHHHHhCCcc---cce-EEehHHhCCCCCCCCCCC
Confidence            1 1     123444433211 149999999998777776644321   112 332 233    8998854

>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli}

Probab=95.49  E-value=0.014  Score=46.58  Aligned_cols=108  Identities=18%  Similarity=0.270  Sum_probs=68.4

Q ss_pred             ceEEEEccCCCCcchHHHHhHHh--CCCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcCchh
Q 029616            3 YRYAMVCSSNQNRSMEAHYLLKR--HGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILP   80 (190)
Q Consensus         3 l~~AvVCaSN~NRSMEAH~~L~k--~Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NGlL~   80 (190)
                      .+|-.||..|.=||=-|..+|++  .++.|.|-||+.   .||..++.         ..  -        +.-.+.||  
T Consensus        27 ~~VLFVCtgNicRSpmAEal~r~~~~~~~v~SAGt~~---~~g~~~~p---------~a--~--------~vl~e~Gi--   82 (168)
T 2wja_A           27 DSILVICTGNICRSPIGERLLRRLLPSKKINSAGVGA---LVDHAADE---------SA--I--------RVAEKNGL--   82 (168)
T ss_dssp             SEEEEEESSSSSHHHHHHHHHHHHSTTSEEEEEETTC---CTTCCCCH---------HH--H--------HC---CCC--
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHHhcCCeEEEeeecCC---CCCCCCCH---------HH--H--------HHHHHcCC--
Confidence            48999999999999999999996  369999999998   68876552         11  1        11233454  


Q ss_pred             hhhcccCC-CCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEE-EEe----eccCCHH
Q 029616           81 MLKRNIGV-KAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLV-INL----EVKDNHE  145 (190)
Q Consensus        81 MLdRNr~I-K~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHV-INv----DIkDnhE  145 (190)
                            .+ ...|..|.+..- ..||+|||.++.-.+.++..+-.    ....|+. ...    ||.|-..
T Consensus        83 ------d~s~~~sr~l~~~~~-~~~DlIitM~~~~~~~l~~~~p~----~~~kv~~l~~w~~~~~I~DP~~  142 (168)
T 2wja_A           83 ------CLKGHRGTKFTSALA-RQYDLLLVMEYSHLEQISRIAPE----ARGKTMLFGHWLDSKEIPDPYR  142 (168)
T ss_dssp             ------CCTTCCCCBCCHHHH-TTCSEEEESSHHHHHHHHHHCTT----TGGGEEETTCC---CCCCCCTT
T ss_pred             ------CcccCccCCCChhHh-ccCCEEEEcCHHHHHHHHHhCCc----ccceEEeeHhhCCCCCCCCCCC
Confidence                  12 123555543211 15999999998877766664332    1112332 233    8999753

>1y1l_A Arsenate reductase (ARSC); detoxification, cadmium, oxidized form, structural genomics, PSI, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.44.1.1

Probab=95.11  E-value=0.025  Score=42.40  Aligned_cols=99  Identities=19%  Similarity=0.291  Sum_probs=62.0

Q ss_pred             eEEEEccCCCCcchHHHHhHHhC--CCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcCchhh
Q 029616            4 RYAMVCSSNQNRSMEAHYLLKRH--GFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPM   81 (190)
Q Consensus         4 ~~AvVCaSN~NRSMEAH~~L~k~--Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NGlL~M   81 (190)
                      ||-.||..|.=||--|..+|++.  ++.|.|-||+.     |..++           ...-+        .-.+.||=  
T Consensus         1 ~VLFVC~gN~cRSpmAEa~~~~~~~~~~v~SAGt~~-----g~~~~-----------~~a~~--------~l~e~Gid--   54 (124)
T 1y1l_A            1 KVLFVCIHNTARSVMAEALFNAMAKSWKAESAGVEK-----AERVD-----------ETVKR--------LLAERGLK--   54 (124)
T ss_dssp             CEEEEESSCSSHHHHHHHHHHTTCSSCCEEEEESSC-----CSSCC-----------HHHHH--------HHHTTTCC--
T ss_pred             CEEEEeCCChhHHHHHHHHHHHhcCCEEEEecCCCC-----CCCCC-----------HHHHH--------HHHHcCcC--
Confidence            57899999999999999999987  69999999995     43322           11222        23445652  


Q ss_pred             hhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEEEEeeccCCHH
Q 029616           82 LKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHE  145 (190)
Q Consensus        82 LdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVINvDIkDnhE  145 (190)
                            -...|..|.+..- ..||+|||.++.      +    .-+.....++....||.|-..
T Consensus        55 ------s~~~sr~l~~~~~-~~~D~Ii~m~~~------~----~~p~~~~~~~~~~~~i~DP~~  101 (124)
T 1y1l_A           55 ------AKEKPRTVDEVNL-DDFDLIVTVCEE------S----SCVVLPTDKPVTRWHIENPAG  101 (124)
T ss_dssp             ------CCSSCCBGGGSCG-GGCSCEEEEECS------S----CCBCCSCSSCEEEEECCCCTT
T ss_pred             ------CCCccccCChhHh-cCCCEEEEecCc------c----cCcCCCCCeeecceecCCCCC
Confidence                  1123444543321 259999999875      1    111111223446679999874

>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas foetus} SCOP: c.44.1.1

Probab=94.50  E-value=0.022  Score=43.71  Aligned_cols=113  Identities=18%  Similarity=0.208  Sum_probs=66.3

Q ss_pred             CCceEEEEccCCCCcchHHHHhHHhC---CCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcC
Q 029616            1 MKYRYAMVCSSNQNRSMEAHYLLKRH---GFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNG   77 (190)
Q Consensus         1 ~~l~~AvVCaSN~NRSMEAH~~L~k~---Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NG   77 (190)
                      ++.+|-.||..|.=||--|..+|++.   .+.|.|-||+..  -+|..++           ...-+-        -.+.|
T Consensus         3 ~~~~VLFVC~gN~cRSpmAEal~~~~~~~~~~v~SAGt~~~--~~g~~~~-----------p~a~~~--------l~e~G   61 (146)
T 1p8a_A            3 EKKAVLFVCLGNICRSPACEGICRDMVGDKLIIDSAATSGF--HVGQSPD-----------TRSQKV--------CKSNG   61 (146)
T ss_dssp             CCCCEEEESSSSCSSSTTHHHHHHHHHSSCSSCEEECSCTT--SCSCSCT-----------HHHHHH--------HHHHS
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEeeecCCc--ccCCCCC-----------HHHHHH--------HHHcC
Confidence            45789999999999999999999864   389999999851  0132222           222222        23345


Q ss_pred             chhhhhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEEEE--eeccCCHH
Q 029616           78 ILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVIN--LEVKDNHE  145 (190)
Q Consensus        78 lL~MLdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVIN--vDIkDnhE  145 (190)
                      |= + .     ...|..|.+..- ..||+|||-++.-.+.+.+..-.   .....++.+.  -||.|-.-
T Consensus        62 id-~-s-----~~~sr~l~~~~~-~~~DlIi~m~~~~~~~l~~~~p~---~~~~kv~~l~~~~~i~DP~~  120 (146)
T 1p8a_A           62 VD-I-S-----KQRARQITKADF-SKFDVIAALDQSILSDINSMKPS---NCRAKVVLFNPPNGVDDPYY  120 (146)
T ss_dssp             CC-C-C-----CCCCCCCCSHHH-HSCSEEEESSHHHHHHHHHHCCS---SCSCEEEECSCTTSSCCCSS
T ss_pred             CC-h-h-----cCeeccCCHhHh-hcCCEEEEeChHHHHHHHHHCCc---ccCCeEEEeCCCCCCCCCCC
Confidence            41 1 1     113333432211 14999999998776665543221   1122344432  28998865

>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A

Probab=94.48  E-value=0.023  Score=43.11  Aligned_cols=37  Identities=30%  Similarity=0.300  Sum_probs=32.5

Q ss_pred             CceEEEEccCCCCcchHHHHhHHhC---CCCeeeecCCCc
Q 029616            2 KYRYAMVCSSNQNRSMEAHYLLKRH---GFDVSSYGTGAH   38 (190)
Q Consensus         2 ~l~~AvVCaSN~NRSMEAH~~L~k~---Gf~V~SfGTGs~   38 (190)
                      +.+|-.||..|.=||=-|..+|++.   ++.|.|-||+.+
T Consensus         3 ~~~VLFVC~gN~cRSpmAEa~~~~~~~~~~~v~SAGt~~~   42 (131)
T 1jf8_A            3 KKTIYFISTGNSARSQMAEGWGKEILGEGWNVYSAGIETH   42 (131)
T ss_dssp             CEEEEEEESSSSSHHHHHHHHHHHHSTTTEEEEEEESSCC
T ss_pred             CCEEEEEcCCcchHHHHHHHHHHHhcCCCEEEEcCcCCCC
Confidence            4679999999999999999999975   478999999963

>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A

Probab=94.36  E-value=0.035  Score=43.30  Aligned_cols=89  Identities=18%  Similarity=0.265  Sum_probs=56.7

Q ss_pred             CceEEEEccCCCCcchHHHHhHHhC----C----CCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHH
Q 029616            2 KYRYAMVCSSNQNRSMEAHYLLKRH----G----FDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELY   73 (190)
Q Consensus         2 ~l~~AvVCaSN~NRSMEAH~~L~k~----G----f~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY   73 (190)
                      +.+|-+||..|.=||=-|..+|++.    |    +.|.|-||+..  .+|..++           ...-+-        -
T Consensus         4 ~~~VLFVC~gN~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~--~~G~~~~-----------p~a~~~--------l   62 (163)
T 1u2p_A            4 PLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNW--HVGSCAD-----------ERAAGV--------L   62 (163)
T ss_dssp             CEEEEEEESSSSSHHHHHHHHHHHHHHHTTCTTTEEEEEEESSCT--TTTCCCC-----------HHHHHH--------H
T ss_pred             CCEEEEEcCCcHhHHHHHHHHHHHHHHHCCCCCcEEEEecccCCC--cCCCCCC-----------HHHHHH--------H
Confidence            4689999999999999999888765    4    67999999862  2354433           122222        2


Q ss_pred             HhcCchhhhhcccCCCCCccccccccCCCcccEEEecccchHHHHHHH
Q 029616           74 KRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVED  121 (190)
Q Consensus        74 ~~NGlL~MLdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vved  121 (190)
                      .+.||=        +...|..|....- .. |+|||-++.-.+.+.+.
T Consensus        63 ~~~Gid--------~s~~ar~l~~~~~-~~-DlIi~Md~~~~~~l~~~  100 (163)
T 1u2p_A           63 RAHGYP--------TDHRAAQVGTEHL-AA-DLLVALDRNHARLLRQL  100 (163)
T ss_dssp             HHTTCC--------CCCCCCBCCHHHH-TS-SEEEESSHHHHHHHHHT
T ss_pred             HHcCcC--------CCceeeECChhhc-cC-CEEEEeCHHHHHHHHHH
Confidence            345651        1123444433211 25 99999998877766553

>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni}

Probab=94.11  E-value=0.056  Score=42.24  Aligned_cols=90  Identities=19%  Similarity=0.304  Sum_probs=58.0

Q ss_pred             ceEEEEccCCCCcchHHHHhHHhC----C----CCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHH
Q 029616            3 YRYAMVCSSNQNRSMEAHYLLKRH----G----FDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYK   74 (190)
Q Consensus         3 l~~AvVCaSN~NRSMEAH~~L~k~----G----f~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~   74 (190)
                      .+|-+||..|.=||=-|..+|++.    |    +.|.|-||+..  .||..++.           ..-+        .-.
T Consensus         2 ~~VLFVC~gNicRSpmAEai~~~~~~~~gl~~~~~v~SAGt~~~--~~g~~~~~-----------~a~~--------~l~   60 (156)
T 2gi4_A            2 KKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFINSAGTSGE--HDGEGMHY-----------GTKN--------KLA   60 (156)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHHHHHTTTTTCEEEEEBSSCS--STTCCCCH-----------HHHH--------HHH
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEeeecCCc--ccCCCCCH-----------HHHH--------HHH
Confidence            379999999999999999998853    3    78999999963  35555441           1222        223


Q ss_pred             hcCchhhhhcccCCC-CCccccccccCCCcccEEEecccchHHHHHHHH
Q 029616           75 RNGILPMLKRNIGVK-AAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDL  122 (190)
Q Consensus        75 ~NGlL~MLdRNr~IK-~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl  122 (190)
                      +.||        .+. ..|..|.+..- ..||+|||-++.-.+.+.+..
T Consensus        61 ~~Gi--------d~s~~~ar~l~~~d~-~~~DlIi~Md~~~~~~l~~~~  100 (156)
T 2gi4_A           61 QLNI--------EHKNFTSKKLTQKLC-DESDFLITMDNSNFKNVLKNF  100 (156)
T ss_dssp             HTSC--------SCCCCCCCBCCHHHH-TTCSEEECCCHHHHHHHHHHS
T ss_pred             HcCC--------CccCCccccCCHHHh-ccCCEEEEECChHHHHHHHHC
Confidence            4454        111 13444433211 159999999988877765543

>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}

Probab=94.08  E-value=0.049  Score=42.70  Aligned_cols=102  Identities=16%  Similarity=0.224  Sum_probs=62.7

Q ss_pred             ceEEEEccCCCCcchHHHHhHHhC---CCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcCch
Q 029616            3 YRYAMVCSSNQNRSMEAHYLLKRH---GFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGIL   79 (190)
Q Consensus         3 l~~AvVCaSN~NRSMEAH~~L~k~---Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NGlL   79 (190)
                      .+|-.||..|.-||--|..+|++.   ++.|.|-||+.     |..++.           ..-+        .-++.|| 
T Consensus        21 ~~VLFVC~gN~cRSpmAEal~~~~~~~~~~v~SAGt~~-----g~~~dp-----------~a~~--------vl~e~Gi-   75 (148)
T 3rh0_A           21 KSVLFVCVGNGGKSQMAAALAQKYASDSVEIHSAGTKP-----AQGLNQ-----------LSVE--------SIAEVGA-   75 (148)
T ss_dssp             CEEEEEESSSSSHHHHHHHHHHHHCCTTSEEEEEESSC-----CSSCCH-----------HHHH--------HHHHTTC-
T ss_pred             CEEEEECCCchhHHHHHHHHHHHhcCCCEEEEecccCC-----CCCCCH-----------HHHH--------HHHHcCC-
Confidence            579999999999999999999874   58999999983     543331           1111        2234554 


Q ss_pred             hhhhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEEEEeeccCCHH
Q 029616           80 PMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHE  145 (190)
Q Consensus        80 ~MLdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVINvDIkDnhE  145 (190)
                      .+ .     ...|..|.+..- ..||+|||.++...+.    +   .....+ + ...-||.|-.-
T Consensus        76 di-s-----~h~ar~l~~~~~-~~~DlIitM~~~~~~~----~---p~~~~k-~-~~~w~VpDPy~  125 (148)
T 3rh0_A           76 DM-S-----QGIPKAIDPELL-RTVDRVVILGDDAQVD----M---PESAQG-A-LERWSIEEPDA  125 (148)
T ss_dssp             CC-T-----TCCCCBCCHHHH-HHCSEEEEESSSCCCC----C---CTTCCS-E-EEEECCCCCSC
T ss_pred             Cc-C-----CCeeeECCHHHh-cCCCEEEEecChHHhh----C---ccCCCC-E-eecCCcCCCCC
Confidence            11 1     123444443211 1499999997766432    1   111122 2 56779999854

>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B

Probab=94.05  E-value=0.031  Score=42.43  Aligned_cols=36  Identities=28%  Similarity=0.229  Sum_probs=31.8

Q ss_pred             CceEEEEccCCCCcchHHHHhHHhCC---CCeeeecCCC
Q 029616            2 KYRYAMVCSSNQNRSMEAHYLLKRHG---FDVSSYGTGA   37 (190)
Q Consensus         2 ~l~~AvVCaSN~NRSMEAH~~L~k~G---f~V~SfGTGs   37 (190)
                      +.+|-+||..|.=||=-|..+|++..   +.|.|-||+.
T Consensus         3 ~~~VLFVC~gN~cRSpmAEai~~~~~~~~~~v~SAGt~~   41 (139)
T 1jl3_A            3 NKIIYFLCTGNSCRSQMAEGWAKQYLGDEWKVYSAGIEA   41 (139)
T ss_dssp             CEEEEEEESSSSSHHHHHHHHHHHHSCTTEEEEEEESSC
T ss_pred             CCeEEEEcCCchHHHHHHHHHHHHhCCCCEEEEcCcCCC
Confidence            45799999999999999999999753   7899999996

>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase; NMR {Synechocystis} PDB: 2l18_A 2l19_A

Probab=93.77  E-value=0.037  Score=42.03  Aligned_cols=33  Identities=30%  Similarity=0.353  Sum_probs=30.2

Q ss_pred             eEEEEccCCCCcchHHHHhHHhC---CCCeeeecCC
Q 029616            4 RYAMVCSSNQNRSMEAHYLLKRH---GFDVSSYGTG   36 (190)
Q Consensus         4 ~~AvVCaSN~NRSMEAH~~L~k~---Gf~V~SfGTG   36 (190)
                      +|-.||.-|.=||=-|..+|++.   ++.|.|-||+
T Consensus         6 ~VLFVC~gN~cRSpmAEa~~~~~~~~~~~v~SAGt~   41 (134)
T 2l17_A            6 KVMFVCKRNSCRSQMAEGFAKTLGAGKIAVTSCGLE   41 (134)
T ss_dssp             EEEEECCSSTHHHHHHHHHHHHHSBTTEEEEEECCT
T ss_pred             EEEEEeCCchHHHHHHHHHHHHHcCCCEEEEcccCC
Confidence            79999999999999999999975   4889999998

>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A

Probab=93.54  E-value=0.038  Score=43.43  Aligned_cols=113  Identities=19%  Similarity=0.241  Sum_probs=67.4

Q ss_pred             CceEEEEccCCCCcchHHHHhHHh----C----CCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHH
Q 029616            2 KYRYAMVCSSNQNRSMEAHYLLKR----H----GFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELY   73 (190)
Q Consensus         2 ~l~~AvVCaSN~NRSMEAH~~L~k----~----Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY   73 (190)
                      +.+|-.||..|.=||--|..+|++    +    .+.|.|-||+..  -.|..++           ...-+-        -
T Consensus         5 ~~~vLFVC~gN~cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~--~~G~~~~-----------~~a~~~--------l   63 (157)
T 3n8i_A            5 TKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGY--EIGNPPD-----------YRGQSC--------M   63 (157)
T ss_dssp             CEEEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEESSST--TTTCCCC-----------HHHHHH--------H
T ss_pred             CCEEEEECCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeeecCcc--ccCCCCC-----------HHHHHH--------H
Confidence            568999999999999989888875    3    378999999852  1243333           222222        2


Q ss_pred             HhcCchhhhhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEEE-------EeeccCCHH
Q 029616           74 KRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVI-------NLEVKDNHE  145 (190)
Q Consensus        74 ~~NGlL~MLdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVI-------NvDIkDnhE  145 (190)
                      .+.||= + .      ..|..+....- ..||+|||.++.-++.+.+-.-.- +.....|+.+       .-||.|-.-
T Consensus        64 ~~~Gid-~-~------~~ar~l~~~~~-~~~DlIi~M~~~n~~~l~~~~p~~-~~~~~kv~ll~~~~~~~~~dVpDPy~  132 (157)
T 3n8i_A           64 KRHGIP-M-S------HVARQITKEDF-ATFDYILCMDESNLRDLNRKSNQV-KTCKAKIELLGSYDPQKQLIIEDPYY  132 (157)
T ss_dssp             HHTTCC-C-C------CCCCBCCHHHH-HHCSEEEESSHHHHHHHHHHHTTS-SCCCCEEEEGGGGCTTCCCCCCCCTT
T ss_pred             HHcCcC-C-C------CceeECCHHHc-CCCCEEEEeCcHHHHHHHHHCCCc-cCccceEEEHHHhCcCCCCCCCCCCC
Confidence            456652 2 1      12233322110 149999999999888877655321 0122334433       237888654

>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}

Probab=93.37  E-value=0.044  Score=43.75  Aligned_cols=89  Identities=20%  Similarity=0.330  Sum_probs=54.7

Q ss_pred             ceEEEEccCCCCcchHHHHhHHh----CC----CCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHH
Q 029616            3 YRYAMVCSSNQNRSMEAHYLLKR----HG----FDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYK   74 (190)
Q Consensus         3 l~~AvVCaSN~NRSMEAH~~L~k----~G----f~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~   74 (190)
                      +||-+||.-|.=||=-|..+|++    +|    +.|.|.||+..  -+|..++.           ..-        +.-+
T Consensus        19 ~kVLFVCtGNiCRSpmAE~i~r~~~~~~gl~~~~~v~SAGt~~~--~~G~~~d~-----------~a~--------~~l~   77 (173)
T 4etm_A           19 ISVLFVCLGNICRSPMAEAIFRDLAAKKGLEGKIKADSAGIGGW--HIGNPPHE-----------GTQ--------EILR   77 (173)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHHHHTTCTTTEEEEEEESSCT--TTTCCCCH-----------HHH--------HHHH
T ss_pred             cEEEEEeCCcchhhHHHHHHHHHHHHHcCCCCceEEeccccccC--CCCCCCCH-----------HHH--------HHHH
Confidence            58999999999999999988874    44    67999999863  13443331           111        1223


Q ss_pred             hcCchhhhhcccCCCC-CccccccccCCCcccEEEecccchHHHHHHH
Q 029616           75 RNGILPMLKRNIGVKA-APQRWQDNALDGSFDIVFTFEEKVFDTVVED  121 (190)
Q Consensus        75 ~NGlL~MLdRNr~IK~-~PERfQ~~~~~~~fDvIiTcEERvfD~Vved  121 (190)
                      +.||        .+-. .+..+.... -..||+|||-++.-.+.+..-
T Consensus        78 ~~Gi--------d~s~h~ar~l~~~d-~~~~DlIl~Md~~~~~~l~~~  116 (173)
T 4etm_A           78 REGI--------SFDGMLARQVSEQD-LDDFDYIIAMDAENIGSLRSM  116 (173)
T ss_dssp             HTTC--------CCTTCCCCBCCHHH-HHHCSEEEESSHHHHHHHHHH
T ss_pred             HCCc--------cccCCccccCCHhh-cCCCCEEEEeCchHHHHHHHH
Confidence            3443        1111 122232211 014999999999888777553

>3t38_A Arsenate reductase; low molecular weight tyrosine phosphatase fold, reduction of to arsenite, oxidoreductase; 2.20A {Corynebacterium glutamicum}

Probab=93.09  E-value=0.065  Score=44.60  Aligned_cols=41  Identities=27%  Similarity=0.370  Sum_probs=34.4

Q ss_pred             CceEEEEccCCCCcchHHHHhHHhC---CCCeeeecCCCceecCCCCCC
Q 029616            2 KYRYAMVCSSNQNRSMEAHYLLKRH---GFDVSSYGTGAHVKLPGPSLR   47 (190)
Q Consensus         2 ~l~~AvVCaSN~NRSMEAH~~L~k~---Gf~V~SfGTGs~VkLPGps~d   47 (190)
                      +.+|-.||..|.-||--|..+|++.   ++.|.|-||.     ||..++
T Consensus        81 ~~~VLFVCtgN~cRSpmAEal~~~~~~~~~~v~SAGt~-----~g~~~d  124 (213)
T 3t38_A           81 VPQVLFICVHNAGRSQIASALLSHYAGSSVEVRSAGSL-----PASEIH  124 (213)
T ss_dssp             CCEEEEEESSSSSHHHHHHHHHHHHHGGGCEEEEEESS-----CCSSCC
T ss_pred             CCEEEEECCCchhHHHHHHHHHHHhccCceEEEecccC-----CCCCCC
Confidence            5789999999999999999998864   4899999985     775544

>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}

Probab=92.88  E-value=0.068  Score=41.76  Aligned_cols=110  Identities=22%  Similarity=0.337  Sum_probs=66.4

Q ss_pred             CceEEEEccCCCCcchHHHHhHHhC----C----CCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHH
Q 029616            2 KYRYAMVCSSNQNRSMEAHYLLKRH----G----FDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELY   73 (190)
Q Consensus         2 ~l~~AvVCaSN~NRSMEAH~~L~k~----G----f~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY   73 (190)
                      +.+|-.||..|.=||--|..+|++.    |    +.|.|-||+..  .+|..++           ...-+        .-
T Consensus         4 ~~~VLFVC~gN~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~--~~g~~~~-----------p~a~~--------~l   62 (161)
T 2cwd_A            4 PVRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAW--HVGEPMD-----------PRARR--------VL   62 (161)
T ss_dssp             CEEEEEEESSSSSHHHHHHHHHHHHHHHHTCTTTEEEEEEESSCT--TTTCCCC-----------HHHHH--------HH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHHHHHHcCCCCcEEEEecccCCC--ccCCCCC-----------HHHHH--------HH
Confidence            4689999999999999999888853    4    57999999951  2343333           11222        22


Q ss_pred             HhcCchhhhhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEEE-Ee----eccCCHH
Q 029616           74 KRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVI-NL----EVKDNHE  145 (190)
Q Consensus        74 ~~NGlL~MLdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVI-Nv----DIkDnhE  145 (190)
                      .+.||=        +...|..|.+..- ..||+|||.++.-.+.+.+..-.   ... .++.+ ..    ||.|-.-
T Consensus        63 ~e~Gid--------~s~~ar~l~~~~~-~~~DlIi~M~~~~~~~l~~~~p~---~~~-kv~~l~~~~~~~~i~DP~~  126 (161)
T 2cwd_A           63 EEEGAY--------FPHVARRLTREDV-LAYDHILVMDRENLEEVLRRFPE---ARG-KVRLVLEELGGGEVQDPYY  126 (161)
T ss_dssp             HHHTCC--------CCCCCCBCCHHHH-HHCSEEEESSHHHHHHHHHHCGG---GTT-TEEEGGGGGTCCCCCCCTT
T ss_pred             HHcCcC--------ccccccCCCHhHh-ccCCEEEECChHHHHHHHHHCCC---ccC-cEEeehhhcCCCCCCCCCC
Confidence            345652        1123444432211 14999999998887766654332   112 34433 44    8999753

>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*

Probab=92.32  E-value=0.062  Score=42.17  Aligned_cols=90  Identities=20%  Similarity=0.338  Sum_probs=56.8

Q ss_pred             ceEEEEccCCCCcchHHHHhHHh----CC----CCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHH
Q 029616            3 YRYAMVCSSNQNRSMEAHYLLKR----HG----FDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYK   74 (190)
Q Consensus         3 l~~AvVCaSN~NRSMEAH~~L~k----~G----f~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~   74 (190)
                      .+|-.||..|.=||=-|..+|++    +|    +.|.|-||+..  ..|..++           ...-+        .-.
T Consensus         5 ~~vLFVC~gN~cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~--~~G~~~~-----------~~a~~--------~l~   63 (161)
T 3jvi_A            5 MKLLFVCLGNICRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSY--HEGQQAD-----------SRMRK--------VGK   63 (161)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEESCCT--TTTCBCC-----------HHHHH--------HHH
T ss_pred             cEEEEECCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeeecCCc--ccCCCCC-----------HHHHH--------HHH
Confidence            58999999999999889888774    33    68999999862  1343333           11222        234


Q ss_pred             hcCchhhhhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHH
Q 029616           75 RNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDL  122 (190)
Q Consensus        75 ~NGlL~MLdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl  122 (190)
                      +.|| .+ .      ..|..+.+..- ..||+|||.++.-.+.+..-.
T Consensus        64 ~~Gi-d~-~------~~ar~l~~~~~-~~~DlIl~Md~~~~~~l~~~~  102 (161)
T 3jvi_A           64 SRGY-QV-D------SISRPVVSSDF-KNFDYIFAMDNDNYYELLDRC  102 (161)
T ss_dssp             HTTC-CC-C------CBCCBCCHHHH-HHCSEEEESSHHHHHHHHHHS
T ss_pred             HcCc-CC-C------CeeeECCHHHh-cCCCEEEEeChHHHHHHHHhc
Confidence            5565 22 2      22333332210 149999999988777776644

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=87.08  E-value=0.43  Score=34.40  Aligned_cols=30  Identities=27%  Similarity=0.401  Sum_probs=26.1

Q ss_pred             ceEEEEccCCCCcchHHHHhHHhCCCCeeee
Q 029616            3 YRYAMVCSSNQNRSMEAHYLLKRHGFDVSSY   33 (190)
Q Consensus         3 l~~AvVCaSN~NRSMEAH~~L~k~Gf~V~Sf   33 (190)
                      ..+.++|.| .+||..|-..|+++||++.+.
T Consensus        57 ~~ivv~C~~-G~rS~~aa~~L~~~G~~~~~l   86 (103)
T 3iwh_A           57 EIYYIVCAG-GVRSAKVVEYLEANGIDAVNV   86 (103)
T ss_dssp             SEEEEECSS-SSHHHHHHHHHHTTTCEEEEE
T ss_pred             CeEEEECCC-CHHHHHHHHHHHHcCCCEEEe
Confidence            368899987 589999999999999988765

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=87.03  E-value=0.61  Score=31.38  Aligned_cols=31  Identities=23%  Similarity=0.410  Sum_probs=26.4

Q ss_pred             ceEEEEccCCCCcchHHHHhHHhCCC-Ceeeec
Q 029616            3 YRYAMVCSSNQNRSMEAHYLLKRHGF-DVSSYG   34 (190)
Q Consensus         3 l~~AvVCaSN~NRSMEAH~~L~k~Gf-~V~SfG   34 (190)
                      ..+-++|.+ .+||..|=..|++.|| +|..+|
T Consensus        42 ~~ivv~C~~-g~rs~~aa~~L~~~G~~~v~~lG   73 (85)
T 2jtq_A           42 DTVKVYCNA-GRQSGQAKEILSEMGYTHVENAG   73 (85)
T ss_dssp             SEEEEEESS-SHHHHHHHHHHHHTTCSSEEEEE
T ss_pred             CcEEEEcCC-CchHHHHHHHHHHcCCCCEEecc
Confidence            368899987 4799999999999999 587774

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=86.29  E-value=0.42  Score=33.27  Aligned_cols=31  Identities=19%  Similarity=0.442  Sum_probs=26.8

Q ss_pred             ceEEEEccCCCCcchHHHHhHHhCCCCeeeec
Q 029616            3 YRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYG   34 (190)
Q Consensus         3 l~~AvVCaSN~NRSMEAH~~L~k~Gf~V~SfG   34 (190)
                      ..+-++|.+. +||..|-..|++.||+|..+-
T Consensus        57 ~~ivvyC~~g-~rs~~a~~~L~~~G~~v~~l~   87 (100)
T 3foj_A           57 ETYYIICKAG-GRSAQVVQYLEQNGVNAVNVE   87 (100)
T ss_dssp             SEEEEECSSS-HHHHHHHHHHHTTTCEEEEET
T ss_pred             CcEEEEcCCC-chHHHHHHHHHHCCCCEEEec
Confidence            3688999775 899999999999999998873

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=85.82  E-value=0.47  Score=33.73  Aligned_cols=31  Identities=29%  Similarity=0.558  Sum_probs=26.7

Q ss_pred             ceEEEEccCCCCcchHHHHhHHhCCCCeeeec
Q 029616            3 YRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYG   34 (190)
Q Consensus         3 l~~AvVCaSN~NRSMEAH~~L~k~Gf~V~SfG   34 (190)
                      ..+-++|.+ .+||..|-..|++.||+|..+-
T Consensus        56 ~~ivvyC~~-G~rs~~aa~~L~~~G~~v~~l~   86 (108)
T 3gk5_A           56 KKYAVICAH-GNRSAAAVEFLSQLGLNIVDVE   86 (108)
T ss_dssp             SCEEEECSS-SHHHHHHHHHHHTTTCCEEEET
T ss_pred             CeEEEEcCC-CcHHHHHHHHHHHcCCCEEEEc
Confidence            358899966 4899999999999999998874

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=85.57  E-value=0.53  Score=33.40  Aligned_cols=33  Identities=21%  Similarity=0.224  Sum_probs=28.3

Q ss_pred             ceEEEEccCCCCcchHHHHhHHhCCCCeeeecC
Q 029616            3 YRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGT   35 (190)
Q Consensus         3 l~~AvVCaSN~NRSMEAH~~L~k~Gf~V~SfGT   35 (190)
                      ..+.++|+...+||..|=..|++.||+|..+--
T Consensus        90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~G  122 (134)
T 3g5j_A           90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEG  122 (134)
T ss_dssp             SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETT
T ss_pred             CeEEEEECCCChHHHHHHHHHHHcCCceEEEeC
Confidence            468899987779999999999999999987743

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=84.84  E-value=0.73  Score=33.85  Aligned_cols=32  Identities=16%  Similarity=0.163  Sum_probs=27.5

Q ss_pred             eEEEEccCCCCcchHHHHhHHhCCC-CeeeecCC
Q 029616            4 RYAMVCSSNQNRSMEAHYLLKRHGF-DVSSYGTG   36 (190)
Q Consensus         4 ~~AvVCaSN~NRSMEAH~~L~k~Gf-~V~SfGTG   36 (190)
                      .+.|+|.|- +||..|=..|+++|| +|.++--|
T Consensus        76 ~ivv~C~sG-~RS~~aa~~L~~~G~~~v~~l~GG  108 (134)
T 1vee_A           76 TLYILDKFD-GNSELVAELVALNGFKSAYAIKDG  108 (134)
T ss_dssp             EEEEECSSS-TTHHHHHHHHHHHTCSEEEECTTT
T ss_pred             EEEEEeCCC-CcHHHHHHHHHHcCCcceEEecCC
Confidence            588999987 699999999999999 59887555

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A

Probab=84.07  E-value=0.74  Score=34.60  Aligned_cols=32  Identities=19%  Similarity=0.165  Sum_probs=28.7

Q ss_pred             ceEEEEccCCC-CcchHHHHhHHhCCCCeeeec
Q 029616            3 YRYAMVCSSNQ-NRSMEAHYLLKRHGFDVSSYG   34 (190)
Q Consensus         3 l~~AvVCaSN~-NRSMEAH~~L~k~Gf~V~SfG   34 (190)
                      ..+-++|.+.. +||..|-..|++.||+|..+-
T Consensus        73 ~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~  105 (144)
T 3nhv_A           73 KVIITYCWGPACNGATKAAAKFAQLGFRVKELI  105 (144)
T ss_dssp             SEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEE
T ss_pred             CeEEEEECCCCccHHHHHHHHHHHCCCeEEEeC
Confidence            36889999987 999999999999999999884

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=80.82  E-value=1.9  Score=32.04  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=27.1

Q ss_pred             eEEEEccCCCCcchHHHHhHHhCCC-CeeeecCC
Q 029616            4 RYAMVCSSNQNRSMEAHYLLKRHGF-DVSSYGTG   36 (190)
Q Consensus         4 ~~AvVCaSN~NRSMEAH~~L~k~Gf-~V~SfGTG   36 (190)
                      .+.++|.|. +||..|=..|++.|| +|..+--|
T Consensus        82 ~ivvyC~~G-~rS~~aa~~L~~~G~~~v~~l~GG  114 (148)
T 2fsx_A           82 PVIFLCRSG-NRSIGAAEVATEAGITPAYNVLDG  114 (148)
T ss_dssp             CEEEECSSS-STHHHHHHHHHHTTCCSEEEETTT
T ss_pred             EEEEEcCCC-hhHHHHHHHHHHcCCcceEEEcCC
Confidence            588999885 799999999999999 69888433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d1y1la_	124	Arsenate reductase ArsC {Archaeoglobus fulgidus [T	97.26
d1dg9a_	157	Tyrosine phosphatase {Cow (Bos taurus) [TaxId: 991	97.24
d1d1qa_	159	Tyrosine phosphatase {Baker's yeast (Saccharomyces	96.83
d1p8aa_	146	Tyrosine phosphatase {Tritrichomonas foetus [TaxId	96.75
d1jf8a_	130	Arsenate reductase ArsC {Staphylococcus aureus [Ta	93.6

>d1y1la_ c.44.1.1 (A:) Arsenate reductase ArsC {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Arsenate reductase ArsC
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.26  E-value=0.00092  Score=48.17  Aligned_cols=74  Identities=24%  Similarity=0.412  Sum_probs=51.9

Q ss_pred             eEEEEccCCCCcchHHHHhHHhCC--CCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcCchhh
Q 029616            4 RYAMVCSSNQNRSMEAHYLLKRHG--FDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGILPM   81 (190)
Q Consensus         4 ~~AvVCaSN~NRSMEAH~~L~k~G--f~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NGlL~M   81 (190)
                      ||-.||.-|--||--|..+|++.|  +.|.|-||     -||..++ |++                  .+.-...|| + 
T Consensus         1 kVlFvC~gN~~RS~mAea~~~~~~~~~~v~SAG~-----~p~~~v~-p~a------------------~~~l~e~Gi-d-   54 (124)
T d1y1la_           1 KVLFVCIHNTARSVMAEALFNAMAKSWKAESAGV-----EKAERVD-ETV------------------KRLLAERGL-K-   54 (124)
T ss_dssp             CEEEEESSCSSHHHHHHHHHHTTCSSCCEEEEES-----SCCSSCC-HHH------------------HHHHHTTTC-C-
T ss_pred             CEEEEcCCCchHHHHHHHHHHHhcccceeeeecc-----ccccCCC-chH------------------HHHHHHhcc-c-
Confidence            688999999999999999999765  89999988     3665543 222                  223445665 2 


Q ss_pred             hhcccCCCCCccccccccCCCcccEEEec
Q 029616           82 LKRNIGVKAAPQRWQDNALDGSFDIVFTF  110 (190)
Q Consensus        82 LdRNr~IK~~PERfQ~~~~~~~fDvIiTc  110 (190)
                            .+-.|..|-+..- ..||+|||-
T Consensus        55 ------~~~~sk~l~~~~~-~~~D~Vitm   76 (124)
T d1y1la_          55 ------AKEKPRTVDEVNL-DDFDLIVTV   76 (124)
T ss_dssp             ------CCSSCCBGGGSCG-GGCSCEEEE
T ss_pred             ------ccccchhhhhhcc-hhhhhhhhc
Confidence                  3446666755432 259999986

>d1dg9a_ c.44.1.1 (A:) Tyrosine phosphatase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.24  E-value=0.00088  Score=48.89  Aligned_cols=110  Identities=16%  Similarity=0.220  Sum_probs=65.9

Q ss_pred             ceEEEEccCCCCcchHHHHhHHh----CC----CCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHH
Q 029616            3 YRYAMVCSSNQNRSMEAHYLLKR----HG----FDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYK   74 (190)
Q Consensus         3 l~~AvVCaSN~NRSMEAH~~L~k----~G----f~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~   74 (190)
                      .+|-+||..|.-||=-|..+|++    +|    +.|.|.||.+..  +|..++         |..   .       ..=+
T Consensus         6 k~ILFVCtgN~cRSpmAEal~~~~~~~~~l~~~~~v~SaG~~~~~--~g~~~~---------~~a---~-------~~l~   64 (157)
T d1dg9a_           6 KSVLFVCLGNICRSPIAEAVFRKLVTDQNISDNWVIDSGAVSDWN--VGRSPD---------PRA---V-------SCLR   64 (157)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEESCSTT--TTCCCC---------HHH---H-------HHHH
T ss_pred             CeEEEEeCCcHHHHHHHHHHHHHHHHhcCCCccceEeeccccccc--CCCcCC---------HHH---H-------HHHH
Confidence            57999999999999889888874    33    579999986432  233322         111   1       1223


Q ss_pred             hcCchhhhhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEEE-------EeeccCC
Q 029616           75 RNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVI-------NLEVKDN  143 (190)
Q Consensus        75 ~NGlL~MLdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVI-------NvDIkDn  143 (190)
                      +.|+ .       +...+.++.... -..+|+|||.++.-+..+.+..-.-. .....||.+       +.||.|-
T Consensus        65 ~~gi-d-------~~~~~~~~~~~~-~~~~DlIl~m~~~~~~~l~~~~p~~~-~~~~kv~~l~~~~~~~~~~I~DP  130 (157)
T d1dg9a_          65 NHGI-N-------TAHKARQVTKED-FVTFDYILCMDESNLRDLNRKSNQVK-NCRAKIELLGSYDPQKQLIIEDP  130 (157)
T ss_dssp             HTTC-C-------CCCCCCBCCTTH-HHHCSEEEESSHHHHHHHHHHHTTCT-TCCCEEEEGGGGCTTCCCCCCCC
T ss_pred             hcCc-c-------cccchhhhhHHh-hhcccccccchHHHHHHHHHhCCccc-cchheeeehhhhCCCCCCcCCCC
Confidence            4454 2       222222222211 01489999999999999988654322 233445554       4578884

>d1d1qa_ c.44.1.1 (A:) Tyrosine phosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.00073  Score=49.81  Aligned_cols=91  Identities=18%  Similarity=0.237  Sum_probs=56.7

Q ss_pred             CceEEEEccCCCCcchHHHHhHHh----CC-----CCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHH
Q 029616            2 KYRYAMVCSSNQNRSMEAHYLLKR----HG-----FDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPEL   72 (190)
Q Consensus         2 ~l~~AvVCaSN~NRSMEAH~~L~k----~G-----f~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~l   72 (190)
                      |++|.+||..|.=||--|+.+|++    +|     +.|.|.||...-  ||+..+         +..   ..       +
T Consensus         5 k~~ILFVCtgN~cRSpmAEai~~~~~~~~~l~~~~~~v~SAG~~~~~--~~~~~~---------~~~---~~-------~   63 (159)
T d1d1qa_           5 KISVAFIALGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYH--VGESPD---------HRT---VS-------I   63 (159)
T ss_dssp             CEEEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEEESSCTT--BTCCCC---------HHH---HH-------H
T ss_pred             CcEEEEEeCChHhHHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc--CCcccc---------hHH---HH-------H
Confidence            467999999999999999999874    33     679999997642  333332         111   11       1


Q ss_pred             HHhcCchhhhhcccCCCCCccccccccCCCcccEEEecccchHHHHHHHH
Q 029616           73 YKRNGILPMLKRNIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDL  122 (190)
Q Consensus        73 Y~~NGlL~MLdRNr~IK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl  122 (190)
                      =.+.|+ .+--|       +.++.... -..+|+|||.++..+..+.+-.
T Consensus        64 ~~~~g~-~~~h~-------~~~l~~~~-~~~~DlIl~Md~~~~~~l~~~~  104 (159)
T d1d1qa_          64 CKQHGV-KINHK-------GKQIKTKH-FDEYDYIIGMDESNINNLKKIQ  104 (159)
T ss_dssp             HHHTTC-CCCCC-------BCBCCGGG-GGTCSEEEESSHHHHHHHHHHC
T ss_pred             HHhcCC-ccccc-------cceeehhc-cchhhhhhhccHHHHHHHHHHh
Confidence            224443 22111       22232211 1259999999999988887743

>d1p8aa_ c.44.1.1 (A:) Tyrosine phosphatase {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Tritrichomonas foetus [TaxId: 5724]

Probab=96.75  E-value=0.00077  Score=48.92  Aligned_cols=92  Identities=16%  Similarity=0.216  Sum_probs=55.8

Q ss_pred             CceEEEEccCCCCcchHHHHhHHhC---CCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcCc
Q 029616            2 KYRYAMVCSSNQNRSMEAHYLLKRH---GFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGI   78 (190)
Q Consensus         2 ~l~~AvVCaSN~NRSMEAH~~L~k~---Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NGl   78 (190)
                      |.+|-+||..|..||--|+.+|++.   .+.|.|-||..  -.||..++ |+          .-        ..=++.|+
T Consensus         4 k~~VLFVC~gN~cRSpmAEai~~~~~~~~~~v~SAg~~~--~~~g~~~~-~~----------a~--------~~l~~~gi   62 (146)
T d1p8aa_           4 KKAVLFVCLGNICRSPACEGICRDMVGDKLIIDSAATSG--FHVGQSPD-TR----------SQ--------KVCKSNGV   62 (146)
T ss_dssp             CCCEEEESSSSCSSSTTHHHHHHHHHSSCSSCEEECSCT--TSCSCSCT-HH----------HH--------HHHHHHSC
T ss_pred             CCEEEEEECCcHHHHHHHHHHHHHhccCCceEEeEEecc--cccCCCCc-hh----------HH--------HHHHHhCc
Confidence            6789999999999999999999754   46778877653  23443332 11          11        11223443


Q ss_pred             hhhhhcccCCCC-CccccccccCCCcccEEEecccchHHHHHHHHh
Q 029616           79 LPMLKRNIGVKA-APQRWQDNALDGSFDIVFTFEEKVFDTVVEDLN  123 (190)
Q Consensus        79 L~MLdRNr~IK~-~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~  123 (190)
                              .+-. .|..+-... ...||+|||.++.....+.+.+-
T Consensus        63 --------~~~~h~sr~l~~~~-~~~~DlIl~M~~~~~~~l~~~~p   99 (146)
T d1p8aa_          63 --------DISKQRARQITKAD-FSKFDVIAALDQSILSDINSMKP   99 (146)
T ss_dssp             --------CCCCCCCCCCCSHH-HHSCSEEEESSHHHHHHHHHHCC
T ss_pred             --------chhhhccccccHHH-hhhccchhhccHHHHHHHHhhcc
Confidence                    1111 122222211 11499999999999888876543

>d1jf8a_ c.44.1.1 (A:) Arsenate reductase ArsC {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Arsenate reductase ArsC
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.60  E-value=0.019  Score=41.02  Aligned_cols=101  Identities=20%  Similarity=0.173  Sum_probs=61.6

Q ss_pred             CceEEEEccCCCCcchHHHHhHHhC---CCCeeeecCCCceecCCCCCCCCccccCCCCHHHHHHHHhhcChHHHHhcCc
Q 029616            2 KYRYAMVCSSNQNRSMEAHYLLKRH---GFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYKRNGI   78 (190)
Q Consensus         2 ~l~~AvVCaSN~NRSMEAH~~L~k~---Gf~V~SfGTGs~VkLPGps~dkPNvY~FgT~Y~~Iy~dL~~kD~~lY~~NGl   78 (190)
                      |.+|-.||..|--||=-|-.+|++.   ++.|.|.||.     |++ + .|..                  -+.-.+.||
T Consensus         2 k~~vlFvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~-----~~~-v-~p~a------------------i~~l~e~Gi   56 (130)
T d1jf8a_           2 KKTIYFISTGNSARSQMAEGWGKEILGEGWNVYSAGIE-----THG-V-NPKA------------------IEAMKEVDI   56 (130)
T ss_dssp             CEEEEEEESSSSSHHHHHHHHHHHHSTTTEEEEEEESS-----CCC-C-CHHH------------------HHHHHHTTC
T ss_pred             CCEEEEEeCCCcHHHHHHHHHHHhcCCccceecccccc-----ccc-c-chhh------------------hHHhhcccc
Confidence            5789999999999999999999864   6899999973     332 1 2211                  123344454


Q ss_pred             hhhhhcccCC-CCCccccccccCCCcccEEEecccchHHHHHHHHhcCCCCCCCeEEEEEeeccCCH
Q 029616           79 LPMLKRNIGV-KAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNH  144 (190)
Q Consensus        79 L~MLdRNr~I-K~~PERfQ~~~~~~~fDvIiTcEERvfD~Vvedl~~R~~~~~~pVHVINvDIkDnh  144 (190)
                              .+ +-.|..|.+... ..+|+|||.+..-    .+.+..-    ...+.++..+|.|-.
T Consensus        57 --------d~~~~~~k~~~~~~~-~~~DlIi~m~~~~----~~~~p~~----~~~~~~~~w~i~DP~  106 (130)
T d1jf8a_          57 --------DISNHTSDLIDNDIL-KQSDLVVTLCSDA----DNNCPIL----PPNVKKEHWGFDDPA  106 (130)
T ss_dssp             --------CCTTCCCCBCCHHHH-HHCSEEEECSHHH----HHHSCCC----CTTSEEEECCCCCCT
T ss_pred             --------cccccccchhhhhhc-cccCEeeecCHhH----Hhhhccc----CCcceeecccCCCCC
Confidence                    11 234555544321 2499999998643    2222221    122345567999953