Citrus Sinensis ID: 029621

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MAGESDNPRTEDQTNTKNPNPSEEEELEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQVTY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHccccccccccccccccccccccccccccEEEEEEccccccccccHHHcccEEEEEccHHHHHHHHcccccccccccccEEEEEEccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHccccccccccEEEEEEcccccEEEEEcccccccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEccccccccHHHEEEEEEEEEHHHHHHHHHHcccHHHcccccEEEEEEcccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHcHHHHHEEEEEEEccccccEEEEEEcccccHHHEEcc
Coil and Loop (DISEMBL)
magesdnprtedqtntknpnpseeeeleegeivgddessknstavmqqphplehswtfwfdnpfakskqatwgssmrsIYTFSSVEEFWSLYnnihhpsklavgadfycfknkiepkwedpvcanggkwtvifpkgksdtSWLYTLLAMIGeqfdhgdeICGAVVNVRARQEKISLWTKNASNEAAQVTY
Flexible Loop (DISEMBL)
magesdnprtedqtntknpnpseeeelEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKislwtknasneaaqvty
Low Complexity Region (SEG)
MAGESDNPRTEDQTNTKNPNPSeeeeleegeIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQVTY
Disordered region (IsUnstruct)
****************************************************EHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWT************
Disordered Region (DISOPRED)
***************************************************LEHSWTFWFD**************MRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASN***QVT*
Disordered Region (DISEMBL)
************************************************PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQVTY
Disordered Region (DISPRO)
*********************************************MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQVTY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAGESDNPRTEDQTNTKNPNPSEEEELEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQVTY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
O23252	235	Eukaryotic translation in	yes	no	0.794	0.642	0.772	3e-69
P48599	227	Eukaryotic translation in	yes	no	0.878	0.735	0.730	1e-68
O81481	218	Eukaryotic translation in	N/A	no	0.957	0.834	0.671	6e-68
Q9C7P6	240	Eukaryotic translation in	no	no	0.968	0.766	0.570	3e-63
P29557	215	Eukaryotic translation in	N/A	no	0.831	0.734	0.677	4e-63
Q9C7P2	240	Eukaryotic translation in	no	no	0.968	0.766	0.555	7e-62
Q03389	209	Eukaryotic translation in	N/A	no	0.736	0.669	0.595	3e-44
O81482	216	Eukaryotic translation in	N/A	no	0.736	0.648	0.567	5e-43
P48600	206	Eukaryotic translation in	no	no	0.736	0.679	0.553	5e-42
O04663	198	Eukaryotic translation in	no	no	0.752	0.722	0.52	3e-40

>sp|O23252|IF4E1_ARATH Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana GN=EIF4E1 PE=1 SV=1

 Score =  260 bits (665), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 119/154 (77%), Positives = 137/154 (88%), Gaps = 3/154 (1%)

Query: 36  DESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNI 95
           DESSK+    + + HPLEHSWTFWFDNP  KSKQ +WGSS+R ++TFS+VEEFWSLYNN+
Sbjct: 49  DESSKSG---VPESHPLEHSWTFWFDNPAVKSKQTSWGSSLRPVFTFSTVEEFWSLYNNM 105

Query: 96  HHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFD 155
            HPSKLA GADFYCFK+ IEPKWEDP+CANGGKWT+ FPK KSD SWLYTLLA+IGEQFD
Sbjct: 106 KHPSKLAHGADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKSDKSWLYTLLALIGEQFD 165

Query: 156 HGDEICGAVVNVRARQEKISLWTKNASNEAAQVT 189
           HGDEICGAVVN+R +QE+IS+WTKNASNEAAQV+
Sbjct: 166 HGDEICGAVVNIRGKQERISIWTKNASNEAAQVS 199

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.
Arabidopsis thaliana (taxid: 3702)

>sp|P48599|IF4E1_ORYSJ Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica GN=Os01g0970400 PE=2 SV=1

 Score =  258 bits (660), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/167 (73%), Positives = 142/167 (85%)

Query: 23  EEEELEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTF 82
           + +E EEGEI  DD       A    PHPLEH+WTFWFDNP  KSKQATWGSS+R I+TF
Sbjct: 25  DADEREEGEIADDDSGHAPPQANPAAPHPLEHAWTFWFDNPQGKSKQATWGSSIRPIHTF 84

Query: 83  SSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSW 142
           S+VE+FWSLYNNIHHPSKL VGADF+CFKNKIEPKWEDP+CANGGKWT    +GKSDT W
Sbjct: 85  STVEDFWSLYNNIHHPSKLVVGADFHCFKNKIEPKWEDPICANGGKWTFSCGRGKSDTMW 144

Query: 143 LYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQVT 189
           L+TLLAMIGEQFD+GDEICGAVV+VR +QE+I++WTKNA+NEAAQ++
Sbjct: 145 LHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQIS 191

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O81481|IF4E1_MAIZE Eukaryotic translation initiation factor 4E-1 OS=Zea mays PE=2 SV=1

 Score =  256 bits (654), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 127/189 (67%), Positives = 152/189 (80%), Gaps = 7/189 (3%)

Query: 1   MAGESDNPRTEDQTNTKNPNPSEEEELEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWF 60
           MA E+D  R     +   P P E+++ EEGEI  D   + +  A     HPLEHSWTFWF
Sbjct: 1   MAEETDT-RPASAGSRGRPAP-EDDDREEGEIT-DLACAPSPPAT----HPLEHSWTFWF 53

Query: 61  DNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWED 120
           DNP +KSKQA WGSS+R I+TFS+VEEFW LYNNI+HPSKL VGADF+CFKNKIEPKWED
Sbjct: 54  DNPQSKSKQAAWGSSIRPIHTFSTVEEFWGLYNNINHPSKLIVGADFHCFKNKIEPKWED 113

Query: 121 PVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKN 180
           P+CANGGKWT+   +GKSDT WL+TLLAMIGEQFD+GDEICGAVV+VR +QE+I++WTKN
Sbjct: 114 PICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKN 173

Query: 181 ASNEAAQVT 189
           A+NEAAQV+
Sbjct: 174 AANEAAQVS 182

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Zea mays (taxid: 4577)

>sp|Q9C7P6|IF4E3_ARATH Eukaryotic translation initiation factor 4E-3 OS=Arabidopsis thaliana GN=EIF4E3 PE=1 SV=1

 Score =  240 bits (613), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/198 (57%), Positives = 147/198 (74%), Gaps = 14/198 (7%)

Query: 1   MAGESDNPRTEDQTNTKNPNPSEEEELEEGEIVGDDES---------SKNSTAVMQQPHP 51
           MA ++ +P T     T +P+P E+       I GD+++         SK ST V+Q+ H 
Sbjct: 12  MADQNIDPNT-----TTSPSPKEKHVSAIKAISGDEKAPSKEKKNYASKKSTTVIQKSHC 66

Query: 52  LEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFK 111
            ++SWTFWFDNP +KS Q  WGSS+RS+YTF ++EEFWSLYNNIH P+K   GAD YCFK
Sbjct: 67  FQNSWTFWFDNPSSKSNQVIWGSSLRSLYTFGTIEEFWSLYNNIHPPTKWVSGADLYCFK 126

Query: 112 NKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQ 171
           +KIEPKWEDP+CANGGKW+++FPK   + +WL TLLA++GEQFD GDEICGAV+N RAR 
Sbjct: 127 DKIEPKWEDPICANGGKWSMMFPKATLECNWLNTLLALVGEQFDQGDEICGAVLNFRARG 186

Query: 172 EKISLWTKNASNEAAQVT 189
           ++ISLWTKNA+NE AQ++
Sbjct: 187 DRISLWTKNAANEEAQLS 204

Arabidopsis thaliana (taxid: 3702)

>sp|P29557|IF4E1_WHEAT Eukaryotic translation initiation factor 4E-1 OS=Triticum aestivum PE=1 SV=3

 Score =  240 bits (612), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 107/158 (67%), Positives = 132/158 (83%)

Query: 32  IVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSL 91
           I  D + S  + A     HPLE++WTFWFDNP  KS+Q  WGS++  I+TFS+VE+FW L
Sbjct: 22  IADDGDGSSAAAAGRITAHPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGL 81

Query: 92  YNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIG 151
           YNNIH+PSKL VGADF+CFKNKIEPKWEDP+CANGGKWT+   +GKSDT WL+TLLAMIG
Sbjct: 82  YNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIG 141

Query: 152 EQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQVT 189
           EQFD GDEICGAVV+VR +QE++++WTKNA+NEAAQ++
Sbjct: 142 EQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQIS 179

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Triticum aestivum (taxid: 4565)

>sp|Q9C7P2|IF4E2_ARATH Eukaryotic translation initiation factor 4E-2 OS=Arabidopsis thaliana GN=EIF4E2 PE=1 SV=2

 Score =  236 bits (602), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 110/198 (55%), Positives = 146/198 (73%), Gaps = 14/198 (7%)

Query: 1   MAGESDNPRTEDQTNTKNPNPSEEEELEEGEIVGDDES---------SKNSTAVMQQPHP 51
           MA ++ +P T     T +P+P E+       I GD+++         SK ST V+Q+ H 
Sbjct: 12  MADQNIDPNT-----TTSPSPIEKHVSAIKAISGDEKAPSKEKKNYASKKSTTVIQKSHC 66

Query: 52  LEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFK 111
            ++SWTFWFDNP +KS Q  WGSS+RS+YTF+++EEFWSLYNNIH P+K   G+D YCFK
Sbjct: 67  FQNSWTFWFDNPSSKSNQVIWGSSLRSLYTFATIEEFWSLYNNIHPPTKWVSGSDLYCFK 126

Query: 112 NKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQ 171
           +KIEPKWEDP+CANGGKWT+ FP+   +++WL TLLA++GEQFD GDEICGAV+N R R 
Sbjct: 127 DKIEPKWEDPICANGGKWTMFFPRATLESNWLNTLLALVGEQFDQGDEICGAVLNFRTRG 186

Query: 172 EKISLWTKNASNEAAQVT 189
           ++ISLWTK A+NE AQ++
Sbjct: 187 DRISLWTKKAANEEAQLS 204

Arabidopsis thaliana (taxid: 3702)

>sp|Q03389|IF4E2_WHEAT Eukaryotic translation initiation factor isoform 4E-2 OS=Triticum aestivum PE=1 SV=1

 Score =  177 bits (450), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/141 (59%), Positives = 98/141 (69%), Gaps = 1/141 (0%)

Query: 49  PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
           PH L+  WTFW+D        A WG+S++  YTF +VEEFW LY+ I  PSKL   ADF+
Sbjct: 32  PHKLQRQWTFWYDIQTKPKPGAAWGTSLKKGYTFDTVEEFWCLYDQIFRPSKLVGSADFH 91

Query: 109 CFKNKIEPKWEDPVCANGGKWTVIFP-KGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 167
            FK  +EPKWEDP CANGGKWTVI   K   DT WL T +A+IGEQFD   EICG V +V
Sbjct: 92  LFKAGVEPKWEDPECANGGKWTVISSRKTNLDTMWLETCMALIGEQFDESQEICGVVASV 151

Query: 168 RARQEKISLWTKNASNEAAQV 188
           R RQ+K+SLWTK ASNEA QV
Sbjct: 152 RQRQDKLSLWTKTASNEAVQV 172

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Triticum aestivum (taxid: 4565)

>sp|O81482|IF4E2_MAIZE Eukaryotic translation initiation factor isoform 4E-2 OS=Zea mays PE=2 SV=1

 Score =  173 bits (439), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 80/141 (56%), Positives = 100/141 (70%), Gaps = 1/141 (0%)

Query: 49  PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
           PH L   WTFW+D        A WG+S++  YTF +VEEFWS+Y+ I  PSKL+  ADF+
Sbjct: 39  PHKLHRQWTFWYDIQTKTKSGAAWGTSLKKAYTFDTVEEFWSMYDQIFRPSKLSGNADFH 98

Query: 109 CFKNKIEPKWEDPVCANGGKWTV-IFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 167
            FK  +EPKWEDP CANGGKWTV    K   +T WL TL+A+IGEQFD  ++ICG V +V
Sbjct: 99  LFKAGVEPKWEDPECANGGKWTVPCNRKATFETMWLETLMALIGEQFDETEDICGIVASV 158

Query: 168 RARQEKISLWTKNASNEAAQV 188
           RAR +K++LWT+ ASNEA QV
Sbjct: 159 RARGDKLALWTRTASNEAVQV 179

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Zea mays (taxid: 4577)

>sp|P48600|IF4E2_ORYSJ Eukaryotic translation initiation factor isoform 4E-2 OS=Oryza sativa subsp. japonica GN=Os10g0467600 PE=2 SV=2

 Score =  170 bits (431), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 97/141 (68%), Gaps = 1/141 (0%)

Query: 49  PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
           PH L   W FW+D        A WG+S+R  YTF +VEEFW LY+ I  PSK+ V ADF+
Sbjct: 29  PHKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQIFRPSKVTVNADFH 88

Query: 109 CFKNKIEPKWEDPVCANGGKWTVIFPKGKS-DTSWLYTLLAMIGEQFDHGDEICGAVVNV 167
            FK  +EPKWEDP CANGGKWTV   +  + +  WL TL+A+IGEQFD  +EICG V +V
Sbjct: 89  LFKAGVEPKWEDPECANGGKWTVPCSRKTTLENMWLETLMALIGEQFDESEEICGVVASV 148

Query: 168 RARQEKISLWTKNASNEAAQV 188
           R R +K++LWT+ ASNEA QV
Sbjct: 149 RQRGDKLALWTRTASNEAVQV 169

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04663|IF4E4_ARATH Eukaryotic translation initiation factor isoform 4E OS=Arabidopsis thaliana GN=EIF(ISO)4E PE=1 SV=2

 Score =  164 bits (415), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/150 (52%), Positives = 99/150 (66%), Gaps = 7/150 (4%)

Query: 42  STAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKL 101
           +T   +QPH LE  W+FWFDN     K A WG+S+R  YTF +VE+FW L+  I   SKL
Sbjct: 18  ATEAEKQPHKLERKWSFWFDNQ--SKKGAAWGASLRKAYTFDTVEDFWGLHETIFQTSKL 75

Query: 102 AVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTLLAMIGEQFDHGD 158
              A+ + FK  +EPKWEDP CANGGKWT +    +    D  WL TL+A+IGEQFD  D
Sbjct: 76  TANAEIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEALDKGWLETLMALIGEQFDEAD 135

Query: 159 EICGAVVNVR--ARQEKISLWTKNASNEAA 186
           EICG V +VR  ++Q+K+SLWT+  SNEA 
Sbjct: 136 EICGVVASVRPQSKQDKLSLWTRTKSNEAV 165

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. Mediates susceptibility to Turnipmosaic potyvirus (TuMV) and Tobacco etch potyvirus (TEV).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
147826574	268	hypothetical protein VITISV_007434 [Viti	0.952	0.675	0.791	4e-80
225462474	236	PREDICTED: eukaryotic translation initia	0.947	0.762	0.817	1e-79
405110161	231	eukaryotic translation initiation factor	0.936	0.770	0.768	5e-79
302171730	228	eukaryotic translation initiation factor	0.963	0.802	0.767	1e-78
48431257	228	eukaryotic translation initiation factor	0.942	0.785	0.785	1e-78
109629725	228	eukaryotic translation initiation factor	0.963	0.802	0.761	5e-78
224114393	223	predicted protein [Populus trichocarpa]	0.910	0.775	0.784	8e-78
109629723	228	eukaryotic translation initiation factor	0.963	0.802	0.761	1e-77
109629727	228	eukaryotic translation initiation factor	0.963	0.802	0.756	2e-77
388519563	193	unknown [Lotus japonicus]	0.973	0.958	0.738	6e-77

>gi|147826574|emb|CAN72912.1| hypothetical protein VITISV_007434 [Vitis vinifera]

 Score =  302 bits (774), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 148/187 (79%), Positives = 158/187 (84%), Gaps = 6/187 (3%)

Query: 10  TEDQTNTKNPNPSEEEELEEGE----IVGDDESS--KNSTAVMQQPHPLEHSWTFWFDNP 63
           TEDQ +T NPNP    + EE      IV DD S+  K S A+  QPHPLEHSWTFWFDNP
Sbjct: 15  TEDQGSTHNPNPRPHGDDEEDLEEGEIVVDDXSASLKQSAAITHQPHPLEHSWTFWFDNP 74

Query: 64  FAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC 123
            AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHPSKLAVGADF+CFK+KIEPKWEDPVC
Sbjct: 75  SAKSKQAAWGSSMRPIYTFSNVEEFWSIYNNIHHPSKLAVGADFHCFKHKIEPKWEDPVC 134

Query: 124 ANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASN 183
           ANGGKWTV F KGKSDT WLYTLLAMIGEQFDHGDEICGAV+NVRARQEKI+LWTKNASN
Sbjct: 135 ANGGKWTVTFAKGKSDTCWLYTLLAMIGEQFDHGDEICGAVINVRARQEKIALWTKNASN 194

Query: 184 EAAQVTY 190
           EAAQ  Y
Sbjct: 195 EAAQCYY 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462474|ref|XP_002267488.1| PREDICTED: eukaryotic translation initiation factor 4E-1 [Vitis vinifera]

 Score =  300 bits (769), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 152/186 (81%), Positives = 165/186 (88%), Gaps = 6/186 (3%)

Query: 10  TEDQTNTKNPNP----SEEEELEEGEIVGDDESS--KNSTAVMQQPHPLEHSWTFWFDNP 63
           TEDQ +T NPNP     +EE+LEEGEIV DD S+  K S A+  QPHPLEHSWTFWFDNP
Sbjct: 15  TEDQGSTHNPNPRPHGDDEEDLEEGEIVVDDASASLKQSAAITHQPHPLEHSWTFWFDNP 74

Query: 64  FAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC 123
            AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHPSKLAVGADF+CFK+KIEPKWEDPVC
Sbjct: 75  SAKSKQAAWGSSMRPIYTFSNVEEFWSIYNNIHHPSKLAVGADFHCFKHKIEPKWEDPVC 134

Query: 124 ANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASN 183
           ANGGKWTV F KGKSDT WLYTLLAMIGEQFDHGDEICGAV+NVRARQEKI+LWTKNASN
Sbjct: 135 ANGGKWTVTFAKGKSDTCWLYTLLAMIGEQFDHGDEICGAVINVRARQEKIALWTKNASN 194

Query: 184 EAAQVT 189
           EAAQ++
Sbjct: 195 EAAQLS 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|405110161|emb|CCM43797.1| eukaryotic translation initiation factor 4E [Arachis hypogaea]

 Score =  298 bits (764), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 143/186 (76%), Positives = 164/186 (88%), Gaps = 8/186 (4%)

Query: 10  TEDQTNTKNPNPSEEEELEEGEIVGDDESS------KNSTAVMQQPHPLEHSWTFWFDNP 63
           T+DQ  T NPN +E E+LEEGEI+ DD+SS       +S A+ + PHPLE+SWTFWFDNP
Sbjct: 12  TDDQI-TANPN-NENEDLEEGEILDDDDSSATSRPPSSSGALARNPHPLENSWTFWFDNP 69

Query: 64  FAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVC 123
            AKSKQA WGSS+R IYTF++VEEFWS+YNNIHHPSKLAVGADF+CFK+KIEPKWEDP+C
Sbjct: 70  SAKSKQAAWGSSIRPIYTFATVEEFWSIYNNIHHPSKLAVGADFHCFKHKIEPKWEDPIC 129

Query: 124 ANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASN 183
           ANGGKWT+ FP+GKSDTSWLYTLL MIGEQFDHGDEICGAVVNVR RQEKI+LWTKNA+N
Sbjct: 130 ANGGKWTMTFPRGKSDTSWLYTLLGMIGEQFDHGDEICGAVVNVRNRQEKIALWTKNAAN 189

Query: 184 EAAQVT 189
           EAAQV+
Sbjct: 190 EAAQVS 195

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302171730|gb|ADK97766.1| eukaryotic translation initiation factor 4E [Pisum sativum]

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 145/189 (76%), Positives = 161/189 (85%), Gaps = 6/189 (3%)

Query: 6   DNPR---TEDQTNTKNPNPSEEEE--LEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWF 60
           D P+   T+DQ  T NPN   E++  LEEGEI+ +D+SS  S  V+ QPH LE+SWTFWF
Sbjct: 5   DTPKSIITDDQITT-NPNRVIEDDNNLEEGEILDEDDSSATSKPVVHQPHLLENSWTFWF 63

Query: 61  DNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWED 120
           D P AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLAVGADFYCFK+KIEPKWED
Sbjct: 64  DTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWED 123

Query: 121 PVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKN 180
           P+CANGGKWT  +PKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVR R EKIS+WTKN
Sbjct: 124 PICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKN 183

Query: 181 ASNEAAQVT 189
           ASNEAAQV+
Sbjct: 184 ASNEAAQVS 192

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|48431257|gb|AAR04332.2| eukaryotic translation initiation factor 4E [Pisum sativum]

 Score =  297 bits (761), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 143/182 (78%), Positives = 158/182 (86%), Gaps = 3/182 (1%)

Query: 10  TEDQTNTKNPNPSEEEE--LEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKS 67
           T+DQ  T NPN   E++  LEEGEI+ +D+SS  S  V+ QPH LE+SWTFWFD P AKS
Sbjct: 12  TDDQITT-NPNRVIEDDNNLEEGEILDEDDSSATSKPVVHQPHLLENSWTFWFDTPAAKS 70

Query: 68  KQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGG 127
           KQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLAVGADFYCFK+KIEPKWEDP+CANGG
Sbjct: 71  KQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGG 130

Query: 128 KWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQ 187
           KWT  +PKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVR R EKIS+WTKNASNEAAQ
Sbjct: 131 KWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQ 190

Query: 188 VT 189
           V+
Sbjct: 191 VS 192

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109629725|gb|ABG35117.1| eukaryotic translation initiation factor 4E [Pisum sativum]

 Score =  295 bits (756), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 144/189 (76%), Positives = 160/189 (84%), Gaps = 6/189 (3%)

Query: 6   DNPR---TEDQTNTKNPNPSEEEE--LEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWF 60
           D P+   T+DQ  T NPN   E++  LEEGEI+ +D+SS  S  V+ QPH LE+ WTFWF
Sbjct: 5   DTPKSIITDDQITT-NPNRVIEDDNNLEEGEILDEDDSSATSKPVVHQPHLLENPWTFWF 63

Query: 61  DNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWED 120
           D P AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLAVGADFYCFK+KIEPKWED
Sbjct: 64  DTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWED 123

Query: 121 PVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKN 180
           P+CANGGKWT  +PKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVR R EKIS+WTKN
Sbjct: 124 PICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKN 183

Query: 181 ASNEAAQVT 189
           ASNEAAQV+
Sbjct: 184 ASNEAAQVS 192

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114393|ref|XP_002316746.1| predicted protein [Populus trichocarpa] gi|118489143|gb|ABK96378.1| unknown [Populus trichocarpa x Populus deltoides] gi|222859811|gb|EEE97358.1| predicted protein [Populus trichocarpa]

 Score =  295 bits (754), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 138/176 (78%), Positives = 159/176 (90%), Gaps = 3/176 (1%)

Query: 17  KNPNPSEEEELEEGEIV--GDDESS-KNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWG 73
           K PNP+ E++LEEGEIV  GDD+SS K S ++  QPHPLEH WTFWFDNP AKSKQA+WG
Sbjct: 13  KTPNPNTEDDLEEGEIVAGGDDDSSLKKSVSLPYQPHPLEHQWTFWFDNPSAKSKQASWG 72

Query: 74  SSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIF 133
           SS+RSI+TFS++EEFWS+YNNIHHPSKLAVGADF+CFK+KIEPKWEDP+CANGGKW+V  
Sbjct: 73  SSLRSIFTFSTIEEFWSVYNNIHHPSKLAVGADFHCFKDKIEPKWEDPICANGGKWSVTL 132

Query: 134 PKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQVT 189
            KGKSDT WL TLLA+IGEQFDHGDEICGAVV+VRARQEKI++WTKNASNE AQV+
Sbjct: 133 SKGKSDTFWLNTLLALIGEQFDHGDEICGAVVSVRARQEKIAIWTKNASNETAQVS 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109629723|gb|ABG35116.1| eukaryotic translation initiation factor 4E [Pisum sativum]

 Score =  294 bits (753), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 144/189 (76%), Positives = 159/189 (84%), Gaps = 6/189 (3%)

Query: 6   DNPR---TEDQTNTKNPNPSEEEE--LEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWF 60
           D P+   T+DQ  T NPN   E++  LEEGEI+ +D+SS  S  V+ QPH LE SWTFWF
Sbjct: 5   DTPKSIITDDQITT-NPNRVIEDDNNLEEGEILDEDDSSATSKPVVHQPHLLESSWTFWF 63

Query: 61  DNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWED 120
           D P AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLAVGADFYCFK+KIEPKWED
Sbjct: 64  DTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWED 123

Query: 121 PVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKN 180
           P+CANGGKWT  +PKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV  R EKIS+WTKN
Sbjct: 124 PICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVGGRAEKISIWTKN 183

Query: 181 ASNEAAQVT 189
           ASNEAAQV+
Sbjct: 184 ASNEAAQVS 192

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109629727|gb|ABG35118.1| eukaryotic translation initiation factor 4E [Pisum sativum]

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 143/189 (75%), Positives = 159/189 (84%), Gaps = 6/189 (3%)

Query: 6   DNPR---TEDQTNTKNPNPSEEEE--LEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWF 60
           D P+   T+DQ  T NPN   E++  LEEGEI+ +D+SS  S  V+ QPH LE+SWTFWF
Sbjct: 5   DTPKSIITDDQITT-NPNRVIEDDNNLEEGEILDEDDSSATSKPVVHQPHLLENSWTFWF 63

Query: 61  DNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWED 120
           D P AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLA GADFYCFK+KIEPKWED
Sbjct: 64  DTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAAGADFYCFKHKIEPKWED 123

Query: 121 PVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKN 180
           P+CANGGKWT  +PKGKSDTSWLYT LAMIGEQFDHGDEICGAVVNVR R EKIS+WTKN
Sbjct: 124 PICANGGKWTANYPKGKSDTSWLYTSLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKN 183

Query: 181 ASNEAAQVT 189
           ASNEAAQV+
Sbjct: 184 ASNEAAQVS 192

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519563|gb|AFK47843.1| unknown [Lotus japonicus]

 Score =  291 bits (746), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 144/195 (73%), Positives = 164/195 (84%), Gaps = 10/195 (5%)

Query: 1   MAGESDNPR---TEDQTNTKNPNPSEEEELEEGEIVGDDESSK----NSTAVMQQPH-PL 52
           MA E D P+   T+DQ  T NP   +  +LEEGEI+ DD+SS     +S A++ QPH PL
Sbjct: 1   MAVE-DTPKSTITDDQITT-NPKAPDNADLEEGEIIDDDDSSATSKPSSAALVNQPHHPL 58

Query: 53  EHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKN 112
           E+SWTFWFDNP  KSKQA WGS++R IYTFS+VEEFWSLYNN+HHPSKLA+GADF+CFK 
Sbjct: 59  ENSWTFWFDNPSNKSKQAAWGSAIRPIYTFSTVEEFWSLYNNVHHPSKLAIGADFHCFKQ 118

Query: 113 KIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQE 172
           KIEPKWEDP+CANGGKWT+ FPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVR  QE
Sbjct: 119 KIEPKWEDPICANGGKWTMAFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRRAQE 178

Query: 173 KISLWTKNASNEAAQ 187
           KIS+WTKNA+NEAAQ
Sbjct: 179 KISIWTKNAANEAAQ 193

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:2117647	235	EIF4E "AT4G18040" [Arabidopsis	0.794	0.642	0.772	4e-67
TAIR|locus:2013748	240	AT1G29550 [Arabidopsis thalian	0.936	0.741	0.582	2.4e-60
UNIPROTKB|Q03389	209	Q03389 "Eukaryotic translation	0.736	0.669	0.595	8.1e-44
TAIR|locus:2165892	198	LSP1 "LOSS OF SUSCEPTIBILITY T	0.747	0.717	0.536	1.6e-40
FB|FBgn0015218	259	eIF-4E "Eukaryotic initiation	0.7	0.513	0.446	1.3e-31
DICTYBASE|DDB_G0268574	250	eIF4e "eukaryotic translation	0.963	0.732	0.363	1.6e-31
UNIPROTKB|F1PSC3	217	EIF4E "Uncharacterized protein	0.721	0.631	0.465	2.6e-31
UNIPROTKB|D6RBW1	245	EIF4E "Eukaryotic translation	0.894	0.693	0.4	3.3e-31
FB|FBgn0035709	229	eIF4E-4 "eIF4E-4" [Drosophila	0.9	0.746	0.370	4.2e-31
UNIPROTKB|P48597	213	eif4e "Eukaryotic translation	0.721	0.643	0.452	6.9e-31

TAIR|locus:2117647 EIF4E "AT4G18040" [Arabidopsis thaliana (taxid:3702)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 119/154 (77%), Positives = 137/154 (88%)

Query:    36 DESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNI 95
             DESSK+    + + HPLEHSWTFWFDNP  KSKQ +WGSS+R ++TFS+VEEFWSLYNN+
Sbjct:    49 DESSKSG---VPESHPLEHSWTFWFDNPAVKSKQTSWGSSLRPVFTFSTVEEFWSLYNNM 105

Query:    96 HHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFD 155
              HPSKLA GADFYCFK+ IEPKWEDP+CANGGKWT+ FPK KSD SWLYTLLA+IGEQFD
Sbjct:   106 KHPSKLAHGADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKSDKSWLYTLLALIGEQFD 165

Query:   156 HGDEICGAVVNVRARQEKISLWTKNASNEAAQVT 189
             HGDEICGAVVN+R +QE+IS+WTKNASNEAAQV+
Sbjct:   166 HGDEICGAVVNIRGKQERISIWTKNASNEAAQVS 199

GO:0000339 "RNA cap binding" evidence=TAS

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=ISS;IDA;TAS

GO:0006413 "translational initiation" evidence=IEA;ISS;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009615 "response to virus" evidence=IMP

TAIR|locus:2013748 AT1G29550 [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 109/187 (58%), Positives = 139/187 (74%)

Query:    12 DQTNTKNPNPSXXXXXXXXXIVGDDES---------SKNSTAVMQQPHPLEHSWTFWFDN 62
             D   T +P+P          I GD+++         SK ST V+Q+ H  ++SWTFWFDN
Sbjct:    18 DPNTTTSPSPKEKHVSAIKAISGDEKAPSKEKKNYASKKSTTVIQKSHCFQNSWTFWFDN 77

Query:    63 PFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPV 122
             P +KS Q  WGSS+RS+YTF ++EEFWSLYNNIH P+K   GAD YCFK+KIEPKWEDP+
Sbjct:    78 PSSKSNQVIWGSSLRSLYTFGTIEEFWSLYNNIHPPTKWVSGADLYCFKDKIEPKWEDPI 137

Query:   123 CANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNAS 182
             CANGGKW+++FPK   + +WL TLLA++GEQFD GDEICGAV+N RAR ++ISLWTKNA+
Sbjct:   138 CANGGKWSMMFPKATLECNWLNTLLALVGEQFDQGDEICGAVLNFRARGDRISLWTKNAA 197

Query:   183 NEAAQVT 189
             NE AQ++
Sbjct:   198 NEEAQLS 204

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

UNIPROTKB|Q03389 Q03389 "Eukaryotic translation initiation factor isoform 4E-2" [Triticum aestivum (taxid:4565)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 84/141 (59%), Positives = 98/141 (69%)

Query:    49 PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
             PH L+  WTFW+D        A WG+S++  YTF +VEEFW LY+ I  PSKL   ADF+
Sbjct:    32 PHKLQRQWTFWYDIQTKPKPGAAWGTSLKKGYTFDTVEEFWCLYDQIFRPSKLVGSADFH 91

Query:   109 CFKNKIEPKWEDPVCANGGKWTVIFP-KGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 167
              FK  +EPKWEDP CANGGKWTVI   K   DT WL T +A+IGEQFD   EICG V +V
Sbjct:    92 LFKAGVEPKWEDPECANGGKWTVISSRKTNLDTMWLETCMALIGEQFDESQEICGVVASV 151

Query:   168 RARQEKISLWTKNASNEAAQV 188
             R RQ+K+SLWTK ASNEA QV
Sbjct:   152 RQRQDKLSLWTKTASNEAVQV 172

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2165892 LSP1 "LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 80/149 (53%), Positives = 100/149 (67%)

Query:    42 STAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKL 101
             +T   +QPH LE  W+FWFDN     K A WG+S+R  YTF +VE+FW L+  I   SKL
Sbjct:    18 ATEAEKQPHKLERKWSFWFDNQ--SKKGAAWGASLRKAYTFDTVEDFWGLHETIFQTSKL 75

Query:   102 AVGADFYCFKNKIEPKWEDPVCANGGKWT-VIFPKGKS--DTSWLYTLLAMIGEQFDHGD 158
                A+ + FK  +EPKWEDP CANGGKWT V+    K   D  WL TL+A+IGEQFD  D
Sbjct:    76 TANAEIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEALDKGWLETLMALIGEQFDEAD 135

Query:   159 EICGAVVNVR--ARQEKISLWTKNASNEA 185
             EICG V +VR  ++Q+K+SLWT+  SNEA
Sbjct:   136 EICGVVASVRPQSKQDKLSLWTRTKSNEA 164

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS;TAS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS;IDA;TAS

GO:0006413 "translational initiation" evidence=IEA;ISS;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0050687 "negative regulation of defense response to virus" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=TAS

GO:0009615 "response to virus" evidence=IMP

FB|FBgn0015218 eIF-4E "Eukaryotic initiation factor 4E" [Drosophila melanogaster (taxid:7227)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 63/141 (44%), Positives = 86/141 (60%)

Query:    50 HPLEHSWTFWF-DNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
             HPL + WT W+ +N  +KS    W      I +F +VE+FWSLYN+I  PS++ +G+D+ 
Sbjct:    81 HPLMNVWTLWYLENDRSKS----WEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYS 136

Query:   109 CFKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTLLAMIGEQFDHGDEICGAVV 165
              FK  I P WED     GG+W +   K      D  WL  LL +IGE FDH D+ICGAV+
Sbjct:   137 LFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVI 196

Query:   166 NVRARQEKISLWTKNASNEAA 186
             N+R +  KIS+WT + +NE A
Sbjct:   197 NIRGKSNKISIWTADGNNEEA 217

GO:0016281 "eukaryotic translation initiation factor 4F complex" evidence=ISS;NAS;IDA;IPI

GO:0006412 "translation" evidence=ISS;NAS;IDA

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=IDA

GO:0003743 "translation initiation factor activity" evidence=IGI;ISS;NAS;IDA

GO:0005829 "cytosol" evidence=ISS;NAS

GO:0016070 "RNA metabolic process" evidence=NAS;IDA

GO:0006413 "translational initiation" evidence=IGI;NAS;IDA

GO:0000339 "RNA cap binding" evidence=ISS;NAS;IDA

GO:0031370 "eukaryotic initiation factor 4G binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0016321 "female meiosis chromosome segregation" evidence=IMP

GO:0007076 "mitotic chromosome condensation" evidence=IMP

GO:0006325 "chromatin organization" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0001558 "regulation of cell growth" evidence=IMP

GO:0030307 "positive regulation of cell growth" evidence=TAS

GO:0048102 "autophagic cell death" evidence=IEP

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0014069 "postsynaptic density" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009790 "embryo development" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

DICTYBASE|DDB_G0268574 eIF4e "eukaryotic translation initiation factor 4E" [Dictyostelium discoideum (taxid:44689)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 69/190 (36%), Positives = 100/190 (52%)

Query:     4 ESDNPRTEDQTNTKNP-NPSXXXXXXXXXIVGDDESSKNSTAVMQQP-----HPLEHSWT 57
             E+ N  +E  T T N  N               D+ +K      + P     HPL++ W+
Sbjct:    22 ENKNVTSETTTTTNNTQNKETETTDNINKEETADKENKEEQQQEENPENLIKHPLQNRWS 81

Query:    58 FWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPK 117
              W+D    K     W  S++ + +F SVE+FW ++NN+ + S L  G+ ++ FK+ IEPK
Sbjct:    82 LWYDYQSGKINPEHWVDSLKKVISFDSVEDFWCVFNNLPNVSNLKQGSSYHLFKDDIEPK 141

Query:   118 WEDPVCANGGKWTVIFP-KGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISL 176
             WE      GGKW V+   K + D  WL +++A +GE FD  DEICG V N R   +KIS+
Sbjct:   142 WEHESNKRGGKWFVMVKDKSRCDNQWLQSVMACVGETFDSSDEICGIVYNSRKNGDKISV 201

Query:   177 WTKNASNEAA 186
             WTK A +E A
Sbjct:   202 WTKTAQDEKA 211

GO:0006972 "hyperosmotic response" evidence=IEP

GO:0006413 "translational initiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0006417 "regulation of translation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1PSC3 EIF4E "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 68/146 (46%), Positives = 91/146 (62%)

Query:    50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
             HPL++SW  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct:    37 HPLQNSWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 93

Query:   110 FKNKIEPKWEDPVCANGGKWTVIFPKG--KSDTS--WLYTLLAMIGEQFD-HGDEICGAV 164
             FK+ IEP WED     GG+W +   K   +SD    WL TLL +IGE FD + D++CGAV
Sbjct:    94 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 153

Query:   165 VNVRARQEKISLWTKNASNEAAQVTY 190
             VNVRA+ +KI++WT    N  A VT+
Sbjct:   154 VNVRAKGDKIAIWTTECENREA-VTH 178

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

GO:0016442 "RNA-induced silencing complex" evidence=IEA

GO:0010494 "cytoplasmic stress granule" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

UNIPROTKB|D6RBW1 EIF4E "Eukaryotic translation initiation factor 4E" [Homo sapiens (taxid:9606)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 74/185 (40%), Positives = 101/185 (54%)

Query:    11 EDQTNTKNPNPSXXXXXXXXXIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQA 70
             E Q  T  PNP              ++   N    ++  HPL++ W  WF   F   K  
Sbjct:    32 ESQETTPTPNPPTTEEEKTES----NQEVANPEHYIK--HPLQNRWALWF---FKNDKSK 82

Query:    71 TWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWT 130
             TW +++R I  F +VE+FW+LYN+I   S L  G D+  FK+ IEP WED     GG+W 
Sbjct:    83 TWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWL 142

Query:   131 VIFPKG--KSDTS--WLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEA 185
             +   K   +SD    WL TLL +IGE FD + D++CGAVVNVRA+ +KI++WT    N  
Sbjct:   143 ITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRE 202

Query:   186 AQVTY 190
             A VT+
Sbjct:   203 A-VTH 206

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

FB|FBgn0035709 eIF4E-4 "eIF4E-4" [Drosophila melanogaster (taxid:7227)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 67/181 (37%), Positives = 99/181 (54%)

Query:    11 EDQTNTKNPNPSXXXXXXXXXIVGDDESSKNSTAV--MQQPHPLEHSWTFWFDNPFAKSK 68
             ++ T T   +PS          + D +  K  T +  ++  HPLE++WT W+       +
Sbjct:    13 DNGTETLADSPSSSSEDLKT--LSDMDIRKPVTEIVDLRLKHPLENTWTLWY---LENDR 67

Query:    69 QATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGK 128
                W      I +F  VE+FWSLYN+I  PS++ VG+D+  FK  I+P WED     GG+
Sbjct:    68 SKNWEDMQNEITSFDMVEDFWSLYNHIKQPSEIRVGSDYSLFKKGIQPMWEDDANKFGGR 127

Query:   129 WTVIFPKGKS---DTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEA 185
             W +   +G     D  WL  LL +IGE F++ +E+CGAV+N+R +  KIS+WT N  NE 
Sbjct:   128 WVINMGRGSKAELDKLWLDVLLILIGEAFENTEEVCGAVINLRGKSNKISIWTANGHNEL 187

Query:   186 A 186
             A
Sbjct:   188 A 188

GO:0003743 "translation initiation factor activity" evidence=IGI;ISS

GO:0006413 "translational initiation" evidence=IGI;ISS

GO:0016281 "eukaryotic translation initiation factor 4F complex" evidence=ISS;IPI

GO:0000339 "RNA cap binding" evidence=ISS

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=IDA

GO:0031370 "eukaryotic initiation factor 4G binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P48597 eif4e "Eukaryotic translation initiation factor 4E" [Xenopus laevis (taxid:8355)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 66/146 (45%), Positives = 90/146 (61%)

Query:    50 HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
             HPL++ W  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct:    33 HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMSGCDYSL 89

Query:   110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQFD-HGDEICGAV 164
             FK+ IEP WED     GG+W +   K +     D  WL TL+ +IGE FD H D++CGAV
Sbjct:    90 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRNDLDRFWLETLMCLIGESFDEHSDDVCGAV 149

Query:   165 VNVRARQEKISLWTKNASNEAAQVTY 190
             VNVRA+ +KI++WT    N+ A VT+
Sbjct:   150 VNVRAKGDKIAIWTTEFENKDA-VTH 174

GO:0005515 "protein binding" evidence=IPI

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0043234 "protein complex" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23252	IF4E1_ARATH	No assigned EC number	0.7727	0.7947	0.6425	yes	no
O81481	IF4E1_MAIZE	No assigned EC number	0.6719	0.9578	0.8348	N/A	no
P48599	IF4E1_ORYSJ	No assigned EC number	0.7305	0.8789	0.7356	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
pfam01652	162	pfam01652, IF4E, Eukaryotic initiation factor 4E	1e-74
COG5053	217	COG5053, CDC33, Translation initiation factor 4E (	6e-33
PTZ00040	233	PTZ00040, PTZ00040, translation initiation factor	1e-15

>gnl|CDD|216628 pfam01652, IF4E, Eukaryotic initiation factor 4E

 Score =  221 bits (565), Expect = 1e-74
 Identities = 72/140 (51%), Positives = 95/140 (67%), Gaps = 1/140 (0%)

Query: 51  PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCF 110
           PL++ WT W+D      K   +  +++ I TF +VE+FW LYNNI  PSKL +G+D++ F
Sbjct: 1   PLQNKWTLWYDRRPPGDKSKDYEDNLKPIGTFDTVEDFWRLYNNIPRPSKLPLGSDYHLF 60

Query: 111 KNKIEPKWEDPVCANGGKWTVIFPKG-KSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA 169
           K  I+P WEDP   NGGKWT+  PK    D  W   LLA+IGEQFD  DEICG V++VR 
Sbjct: 61  KKGIKPMWEDPANKNGGKWTIRLPKSQNLDRFWEELLLALIGEQFDESDEICGVVLSVRK 120

Query: 170 RQEKISLWTKNASNEAAQVT 189
           +++KIS+WTKNASNE A + 
Sbjct: 121 KEDKISVWTKNASNEEALLR 140

Length = 162

>gnl|CDD|227386 COG5053, CDC33, Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]

 Score =  116 bits (293), Expect = 6e-33
 Identities = 61/176 (34%), Positives = 86/176 (48%), Gaps = 10/176 (5%)

Query: 19  PNPSEEEELEEGEIVGDDESSKNSTAVMQQP-----HPLEHSWTFWFDNPFAKSKQATWG 73
            +  E  +  E  +  D  +    T +         HPL   WT WF  P  +    +W 
Sbjct: 1   MSTEEVSKKFEENVSVDPTTKTPRTVLSDSAHFMNKHPLAFHWTLWFLKP-PEDGLESWS 59

Query: 74  SSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIF 133
             ++SI TF +VEEFW + +NI   S+L   +D+  F+  I P+WED    NGGKW+   
Sbjct: 60  DLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANMNGGKWSFQL 119

Query: 134 PKGKSDT---SWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEA 185
                D     WL TLLA IGE  D  G EI G V N+R    K+++WT+N +N+ 
Sbjct: 120 KGKGCDRLDELWLRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAIWTRNCNNKD 175

Length = 217

>gnl|CDD|240238 PTZ00040, PTZ00040, translation initiation factor E4; Provisional

 Score = 71.8 bits (176), Expect = 1e-15
 Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 29/178 (16%)

Query: 37  ESSKNSTAVMQQPHPLEHSWTFW---FDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYN 93
           E  + +   +  P PL + W  W         KS    +    + + +F SV++FW L+ 
Sbjct: 25  ELFEETKIPLSTPLPLSYKWVIWEQVVKETIRKSND--YKDYTKPLASFDSVQKFWQLWF 82

Query: 94  NIHHPSKLAVGADF---------------YCFKNKIEPKWEDPVCANGGK-----WTVIF 133
           NI  PS+L  G                    FK+ I+P WEDP+ A GG      W    
Sbjct: 83  NIPQPSELLTGKRMIRESSDGSEHVVDAVMIFKDGIQPMWEDPMNATGGHFEYRFWPTDV 142

Query: 134 PKGKSDTSWLYTLLAMIGEQFDHGDEICGA----VVNVRARQEKISLWTKNASNEAAQ 187
             G+ D  W   +LA+IG   +H   I G      ++ R    +I +W  N  +++ +
Sbjct: 143 SPGQIDEYWNNLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRIEIWFTNLGDQSDR 200

Length = 233

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
KOG1670	212	consensus Translation initiation factor 4F, cap-bi	100.0
PTZ00040	233	translation initiation factor E4; Provisional	100.0
PF01652	165	IF4E: Eukaryotic initiation factor 4E; InterPro: I	100.0
KOG1669	208	consensus Predicted mRNA cap-binding protein relat	100.0
COG5053	217	CDC33 Translation initiation factor 4E (eIF-4E) [T	100.0
PF08939	243	DUF1917: Domain of unknown function (DUF1917); Int	89.36

>KOG1670 consensus Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.7e-53  Score=351.69  Aligned_cols=141  Identities=53%  Similarity=1.014  Sum_probs=133.3

Q ss_pred             CCCCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCCC
Q 029621           46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN  125 (190)
Q Consensus        46 ~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~~  125 (190)
                      ....|||++.|||||..+..+   ..|++.|+.|.+|+|||+||++|++|++||+|+.+|+|+|||+||+||||||+|++
T Consensus        31 ~~~~hpL~~~WTlW~l~~d~~---ksW~d~Lk~v~tF~TVeeFW~Ly~~I~~ps~L~~~sDy~lFk~gI~PmWED~~N~~  107 (212)
T KOG1670|consen   31 NHIKHPLQNNWTLWFLKNDRN---KSWEDMLKEVTTFDTVEEFWSLYNNIKPPSGLNRGSDYSLFKKGIRPMWEDPANKN  107 (212)
T ss_pred             cccccccccceeEEeecCCcc---ccHHHHhhhccccccHHHHHHHHhccCChhhCCccccHHHHhcCCCccccCccccC
Confidence            446999999999999988754   28999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEecCC---ChHHHHHHHHHHHhcCCCCCCCCeeeEEEEEcCCCcEEEEecCCCCChhhhhc
Q 029621          126 GGKWTVIFPKG---KSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQVT  189 (190)
Q Consensus       126 GG~w~i~~~k~---~~d~~We~lll~~IGe~f~~~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~~~  189 (190)
                      ||||.|.+++.   .+|.+|.++||+||||+|+++++|||+|+++|++++|||||++++.++++++.
T Consensus       108 GGrW~~~~~k~~k~~lD~~WL~tLlalIGE~fd~~deICGaV~NiR~k~~KISvWT~~~~ne~~~l~  174 (212)
T KOG1670|consen  108 GGRWLITVPKSGKAELDELWLETLLALIGEQFDHSDEICGAVVNIRGKGDKISVWTKNAGNEEAVLR  174 (212)
T ss_pred             CCeEEEEecCcchhhHHHHHHHHHHHHHhhhccccccceeEEEEeccCCceEEEEecCCCchHHHHH
Confidence            99999999864   58999999999999999999999999999999999999999999999998763

>PTZ00040 translation initiation factor E4; Provisional

Probab=100.00  E-value=3.7e-49  Score=334.59  Aligned_cols=141  Identities=31%  Similarity=0.629  Sum_probs=128.3

Q ss_pred             CCCCCCCcceEEEEECCCCc-ccccchhhhcceeeeeccHHHHHhhcccccccccCcccce---------------eeee
Q 029621           47 QQPHPLEHSWTFWFDNPFAK-SKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGAD---------------FYCF  110 (190)
Q Consensus        47 ~~~hpL~~~Wt~W~~~~~~~-~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~---------------~~lF  110 (190)
                      ..+|||+++|||||+.+..+ .+..+|.++|++|++|+|||+||++|+||++||+|+.+++               ||||
T Consensus        35 ~~~hpL~~~Wt~W~~~~~~~~~~~~~y~~~lk~I~sF~TVEeFW~~yn~i~~pS~L~~~~~~~r~~~~~~~~~~~~~~lF  114 (233)
T PTZ00040         35 STPLPLSYKWVIWEQVVKETIRKSNDYKDYTKPLASFDSVQKFWQLWFNIPQPSELLTGKRMIRESSDGSEHVVDAVMIF  114 (233)
T ss_pred             CCCCcCCCcEEEEEEcCcccCcchhhHHHhceEEeEEccHHHHHHHHhCCCChHHcccccccccccccccccccceeeee
Confidence            56899999999999977543 3467899999999999999999999999999999998874               9999


Q ss_pred             cCCCccCCCCCCCCCCcEEEEEecC-----CChHHHHHHHHHHHhcCCCCCCCCeeeEEE----EEcCCCcEEEEecCCC
Q 029621          111 KNKIEPKWEDPVCANGGKWTVIFPK-----GKSDTSWLYTLLAMIGEQFDHGDEICGAVV----NVRARQEKISLWTKNA  181 (190)
Q Consensus       111 K~gI~P~WEDp~N~~GG~w~i~~~k-----~~~d~~We~lll~~IGe~f~~~~~I~Giv~----s~R~~~~rIsIW~~~~  181 (190)
                      |+||+||||||+|++||+|+|++.+     ..+|++|++|||++|||+|+.+++||||+|    |+|++.+||+||++++
T Consensus       115 K~GIkP~WEDp~N~~GG~w~~~~~~~~~~~~~~d~~W~~llLa~IGe~~~~~d~I~Gvvv~~K~s~R~~~~rIsIW~~~~  194 (233)
T PTZ00040        115 KDGIQPMWEDPMNATGGHFEYRFWPTDVSPGQIDEYWNNLVLALIGSSLEHSSLINGIRLVDKLSGRFGVIRIEIWFTNL  194 (233)
T ss_pred             cCCCeECcCCCCcCCCCEEEEEeccccccccHHHHHHHHHHHHHhcCcCCCCcccccEEEeeecccCCCCcEEEEEeCCC
Confidence            9999999999999999999999965     347999999999999999998999999996    6778889999999999


Q ss_pred             CChhhh
Q 029621          182 SNEAAQ  187 (190)
Q Consensus       182 ~~~~~~  187 (190)
                      ++.+++
T Consensus       195 ~d~~~~  200 (233)
T PTZ00040        195 GDQSDR  200 (233)
T ss_pred             CCHHHH
Confidence            988765

>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs

Probab=100.00  E-value=3.4e-48  Score=312.01  Aligned_cols=137  Identities=50%  Similarity=0.959  Sum_probs=126.1

Q ss_pred             CCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCCCCcEEE
Q 029621           51 PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWT  130 (190)
Q Consensus        51 pL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~~GG~w~  130 (190)
                      ||+++|||||+....+.+..+|.++|++|++|+|||+||++|++|++|++|+.+++|+|||+||+||||||+|++||+|+
T Consensus         1 pL~~~Wt~w~~~~~~~~~~~~y~~~l~~i~~f~TvE~Fw~~~~~i~~~s~l~~~~~~~lFk~gI~P~WEDp~N~~GG~~~   80 (165)
T PF01652_consen    1 PLQNKWTFWYDKKQKNSKSDDYEDSLKPIGTFSTVEEFWSLYNHIPKPSELPKGSNYHLFKKGIKPMWEDPANKNGGRWI   80 (165)
T ss_dssp             EEEEEEEEEEEECCCCCTTSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGS-TTEEEEEEETTC-SSTTSTTTTTSEEEE
T ss_pred             CcCCEEEEEEEecCCCCchhhhhhhceEEEEEEeHHHHHHHhccCCCHHHCCCCcceeeeecccccCCCCccCCCccEEE
Confidence            79999999999655555568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCC---ChHHHHHHHHHHHhcCCCCCC-CCeeeEEEEEcCCCcEEEEecCCCCChhhh
Q 029621          131 VIFPKG---KSDTSWLYTLLAMIGEQFDHG-DEICGAVVNVRARQEKISLWTKNASNEAAQ  187 (190)
Q Consensus       131 i~~~k~---~~d~~We~lll~~IGe~f~~~-~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~  187 (190)
                      |++++.   .++++|++|||++|||+|... ++||||++|+|++.++|+||++++++++.+
T Consensus        81 i~~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~iW~~~~~~~~~~  141 (165)
T PF01652_consen   81 IRIKKKNKEQVDEIWENLLLAVIGEQFDEDGDEICGIVLSVRKNGIRISIWNKDSSDEDAQ  141 (165)
T ss_dssp             EEEETTCHHTHHHHHHHHHHHHHTTTSCCGGGGEEEEEEEEESSEEEEEEEESSTT-HHHH
T ss_pred             EEEcCccchhHHHHHHHHHHHHhhcccccCCCcceEEEEEEecCCCEEEEecCCCCCHHHH
Confidence            999998   899999999999999999865 899999999999999999999999887554

eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....

>KOG1669 consensus Predicted mRNA cap-binding protein related to eIF-4E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.1e-45  Score=295.03  Aligned_cols=144  Identities=41%  Similarity=0.797  Sum_probs=137.2

Q ss_pred             CCCCCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCC
Q 029621           45 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCA  124 (190)
Q Consensus        45 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~  124 (190)
                      ...+.|||++..+|||.....+...++|++++++|++|+|||+||++|.|+++|+.|+..+++||||+||+|+|||++|.
T Consensus        25 ~~d~dh~l~y~~t~~y~~r~~Gv~~qsYe~~ik~i~t~~SvE~fw~~~~Hlkr~~~m~~~~dih~FKeGIkPvWED~aN~  104 (208)
T KOG1669|consen   25 LMDMDHPLQYVYTFWYERRTPGVSKQSYEKNIKSIGTFESVEQFWYLYHHLKRPDRMDRQFDIHFFKEGIKPVWEDKANC  104 (208)
T ss_pred             CCCCCCcceEEEEEEEEecCCCCChhhHHHHhHhheeeeeHHHHHHHHHHhcCccccCCceeehhhhccCcccccCcCCC
Confidence            45678999999999999877666688999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEecCCChHHHHHHHHHHHhcCCCCCCCCeeeEEEEEcCCCcEEEEecCCCCChhhhh
Q 029621          125 NGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQV  188 (190)
Q Consensus       125 ~GG~w~i~~~k~~~d~~We~lll~~IGe~f~~~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~~  188 (190)
                      |||+|+|+++|+.+.++||+||++++||+|..+++|||+|+|+|.++++||||++++++.+++.
T Consensus       105 nGgkWiirlkK~vs~R~wE~LLlal~geqf~~~e~icGaV~svr~nediiSiWnRna~dta~~~  168 (208)
T KOG1669|consen  105 NGGKWIIRLKKGVSQRYWENLLLALCGEQFKVGEEICGAVGSVRFNEDIISIWNRNASDTADTG  168 (208)
T ss_pred             CCCeEEEEehHHHHHHHHHHHHHHHHhhhhcccccccceeEEEeccchhhhhhcCCCCcchhHH
Confidence            9999999999999999999999999999999999999999999999999999999999988753

>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.1e-40  Score=269.43  Aligned_cols=141  Identities=40%  Similarity=0.800  Sum_probs=129.8

Q ss_pred             CCCCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCCC
Q 029621           46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN  125 (190)
Q Consensus        46 ~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~~  125 (190)
                      ....|||+..|||||..+... +.+.|.+.|+.|++|+|||+||+++++|+.++.||..++|++||+||+|+|||++|.+
T Consensus        33 f~~~hpl~~~wtlw~l~p~e~-g~esw~dlLk~I~tf~Tveefwyi~~~I~~a~~lprksdynvFreGIrPeWEDeaN~~  111 (217)
T COG5053          33 FMNKHPLAFHWTLWFLKPPED-GLESWSDLLKSIITFETVEEFWYILHNISDASRLPRKSDYNVFREGIRPEWEDEANMN  111 (217)
T ss_pred             HhhcCccccceEEEEecCCcc-chhHHHHHHhhheeeecHHHHHHHHhcCCcccccchhhhHHHHHcCCCccccccccCC
Confidence            557899999999999887643 3455999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEecCC---ChHHHHHHHHHHHhcCCCCC-CCCeeeEEEEEcCCCcEEEEecCCCCChhhh
Q 029621          126 GGKWTVIFPKG---KSDTSWLYTLLAMIGEQFDH-GDEICGAVVNVRARQEKISLWTKNASNEAAQ  187 (190)
Q Consensus       126 GG~w~i~~~k~---~~d~~We~lll~~IGe~f~~-~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~  187 (190)
                      ||+|++.++..   ..+++|..+++++||++|+. +.+|||||++.|++++||+||++++.+.+..
T Consensus       112 Ggkws~qlk~~g~d~~dElwl~tlla~igeT~Dp~~~ei~GvV~n~rkgfyKlAiWtr~~~n~dvl  177 (217)
T COG5053         112 GGKWSFQLKGKGCDRLDELWLRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAIWTRNCNNKDVL  177 (217)
T ss_pred             CCeEEEEcccccchhHHHHHHHHHHHHHhhccCCCCCeeccEEEEeecCceEEEEEecCCCcHHHH
Confidence            99999999874   37899999999999999984 7789999999999999999999999888764

>PF08939 DUF1917: Domain of unknown function (DUF1917); InterPro: IPR015034 This family includes various hypothetical proteins

Probab=89.36  E-value=1.1  Score=38.83  Aligned_cols=60  Identities=18%  Similarity=0.350  Sum_probs=41.5

Q ss_pred             CCCcEEEEEecCCChHHHHHHHHHHHhcCCCCCCCCeeeEEEEE------cCCCcEEEEecCCCCChhhhh
Q 029621          124 ANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV------RARQEKISLWTKNASNEAAQV  188 (190)
Q Consensus       124 ~~GG~w~i~~~k~~~d~~We~lll~~IGe~f~~~~~I~Giv~s~------R~~~~rIsIW~~~~~~~~~~~  188 (190)
                      .-.|+|+|-+++..+|.+|..+.-+++.+.|.     +++-|+.      ..+...|.|.+.+..|.++++
T Consensus       148 v~sGKWmlf~~~~~vd~~W~~Va~at~~g~Lg-----~~AKVst~~~~~~~~~~~vIcVYT~Df~D~~DV~  213 (243)
T PF08939_consen  148 VTSGKWMLFPPPDRVDEIWSKVAKATADGELG-----ISAKVSTGPEDDDGDDRRVICVYTPDFRDREDVM  213 (243)
T ss_dssp             ---EEEEEEE-TTHHHHHHHHHHHHHHTTSS------SEEEE-----B-TTSS-EEEEEEES-TT-HHHHH
T ss_pred             cccceeEEEcCHHHHHHHHHHHHHHHHcCCce-----eeEEecccCCCCCCCCCEEEEEECCCCCCHHHHH
Confidence            44899999999999999999999999987773     2444444      123467999999999998875

; PDB: 1ZTP_B 2Q4K_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
2wmc_A	178	Crystal Structure Of Eukaryotic Initiation Factor 4		3e-72
2idr_A	177	Crystal Structure Of Translation Initiation Factor		2e-62
2idv_A	177	Crystal Structure Of Wheat C113s Mutant Eif4e Bound		2e-61
4axg_A	248	Structure Of Eif4e-Cup Complex Length = 248		1e-32
2w97_B	217	Crystal Structure Of Eif4e Bound To Glycerol And Ei		6e-32
1ipb_A	217	Crystal Structure Of Eukaryotic Initiation Factor 4		2e-31
4dt6_A	240	Co-Crystal Structure Of Eif4e With Inhibitor Length		2e-31
1wkw_A	191	Crystal Structure Of The Ternary Complex Of Eif4e-M		4e-31
1ej1_A	190	Cocrystal Structure Of The Messenger Rna 5' Cap-Bin		5e-31
2jgb_A	195	Structure Of Human Eif4e Homologous Protein 4ehp Wi		3e-30
3m93_A	189	Complex Crystal Structure Of Ascaris Suum Eif4e-3 W		2e-29
1ap8_A	213	Translation Initiation Factor Eif4e In Complex With		2e-26
1rf8_A	213	Solution Structure Of The Yeast Translation Initiat		2e-25
3hxg_A	189	Crystal Structure Of Schistsome Eif4e Complexed Wit		3e-23
4b6v_A	207	The Third Member Of The Eif4e Family Represses Gene		1e-22

>pdb|2WMC|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e From Pisum Sativum Length = 178

Iteration: 1
 Score =  267 bits (682), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 123/142 (86%), Positives = 131/142 (92%)
Query: 48  QPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADF 107
            PH LE+SWTFWFD P AKSKQA WGSSMR IYTFS+VEEFWS+YNNIHHP KLAVGADF
Sbjct: 1   MPHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADF 60
Query: 108 YCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 167
           YCFK+KIEPKWEDP+CANGGKWT  +PKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV
Sbjct: 61  YCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNV 120
Query: 168 RARQEKISLWTKNASNEAAQVT 189
           R R EKIS+WTKNASNEAAQV+
Sbjct: 121 RGRAEKISIWTKNASNEAAQVS 142

>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e From Wheat Length = 177

Iteration: 1
 Score =  234 bits (597), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 103/140 (73%), Positives = 126/140 (90%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPLE++WTFWFDNP  KS+Q  WGS++  I+TFS+VE+FW LYNNIH+PSKL VGADF+C
Sbjct: 2   HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA 169
           FKNKIEPKWEDP+CANGGKWT+   +GKSDT WL+TLLAMIGEQFD GDEICGAVV+VR 
Sbjct: 62  FKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQ 121
Query: 170 RQEKISLWTKNASNEAAQVT 189
           +QE++++WTKNA+NEAAQ++
Sbjct: 122 KQERVAIWTKNAANEAAQIS 141

>pdb|2IDV|A Chain A, Crystal Structure Of Wheat C113s Mutant Eif4e Bound To 7- Methyl-Gdp Length = 177

Iteration: 1
 Score =  231 bits (588), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 102/140 (72%), Positives = 125/140 (89%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPLE++WTFWFDNP  KS+Q  WGS++  I+TFS+VE+FW LYNNIH+PSKL VGADF+C
Sbjct: 2   HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA 169
           FKNKIEPKWEDP+ ANGGKWT+   +GKSDT WL+TLLAMIGEQFD GDEICGAVV+VR 
Sbjct: 62  FKNKIEPKWEDPISANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQ 121
Query: 170 RQEKISLWTKNASNEAAQVT 189
           +QE++++WTKNA+NEAAQ++
Sbjct: 122 KQERVAIWTKNAANEAAQIS 141

>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex Length = 248

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 84/142 (59%), Gaps = 6/142 (4%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL + WT W+       +  +W      I +F +VE+FWSLYN+I  PS++ +G+D+  
Sbjct: 70  HPLMNVWTLWY---LENDRSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSL 126
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTLLAMIGEQFDHGDEICGAVVN 166
           FK  I P WED     GG+W +   K      D  WL  LL +IGE FDH D+ICGAV+N
Sbjct: 127 FKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVIN 186
Query: 167 VRARQEKISLWTKNASNEAAQV 188
           +R +  KIS+WT + +NE A +
Sbjct: 187 IRGKSNKISIWTADGNNEEAAL 208

>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1 Peptide Length = 217

Iteration: 1
 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 8/142 (5%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL++ W  WF   F K K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct: 37  HPLQNRWALWF---FKKDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 93
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
           FK+ IEP WED     GG+W +   K +     D  WL TLL +IGE F D+ D++CGAV
Sbjct: 94  FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 153
Query: 165 VNVRARQEKISLWTKNASNEAA 186
           VNVRA+ +KI++WT    N  A
Sbjct: 154 VNVRAKGDKIAIWTTECENREA 175

>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e Complexed With 7-methyl Gpppa Length = 217

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 86/142 (60%), Gaps = 8/142 (5%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL++ W  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct: 37  HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 93
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
           FK+ IEP WED     GG+W +   K +     D  WL TLL +IGE F D+ D++CGAV
Sbjct: 94  FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 153
Query: 165 VNVRARQEKISLWTKNASNEAA 186
           VNVRA+ +KI++WT    N  A
Sbjct: 154 VNVRAKGDKIAIWTTECENREA 175

>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor Length = 240

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 86/142 (60%), Gaps = 8/142 (5%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL++ W  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct: 60  HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 116
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
           FK+ IEP WED     GG+W +   K +     D  WL TLL +IGE F D+ D++CGAV
Sbjct: 117 FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 176
Query: 165 VNVRARQEKISLWTKNASNEAA 186
           VNVRA+ +KI++WT    N  A
Sbjct: 177 VNVRAKGDKIAIWTTECENREA 198

>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of Eif4e-M7gpppa- 4ebp1 Peptide Length = 191

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 86/142 (60%), Gaps = 8/142 (5%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL++ W  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct: 11  HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 67
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
           FK+ IEP WED     GG+W +   K +     D  WL TLL +IGE F D+ D++CGAV
Sbjct: 68  FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 127
Query: 165 VNVRARQEKISLWTKNASNEAA 186
           VNVRA+ +KI++WT    N  A
Sbjct: 128 VNVRAKGDKIAIWTTECENREA 149

>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding Protein (Eif4e) Bound To 7-Methyl-Gdp Length = 190

Iteration: 1
 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 86/142 (60%), Gaps = 8/142 (5%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL++ W  WF   F   K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct: 10  HPLQNRWALWF---FKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 66
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
           FK+ IEP WED     GG+W +   K +     D  WL TLL +IGE F D+ D++CGAV
Sbjct: 67  FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 126
Query: 165 VNVRARQEKISLWTKNASNEAA 186
           VNVRA+ +KI++WT    N  A
Sbjct: 127 VNVRAKGDKIAIWTTECENRDA 148

>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With M7gtp Length = 195

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 94/146 (64%), Gaps = 4/146 (2%)
Query: 44  AVMQQP--HPLEHSWTFWFDN--PFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPS 99
           AV+  P  HPL++++TFW+    P   +   ++  +++ I TF+SVE+FW  Y+++  P 
Sbjct: 7   AVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPG 66
Query: 100 KLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDE 159
            L   +DF+ FK  I+P WED    NGGKW +   KG +   W   +LAM+GEQF  G+E
Sbjct: 67  DLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEE 126
Query: 160 ICGAVVNVRARQEKISLWTKNASNEA 185
           ICGAVV+VR +++ IS+W K AS++A
Sbjct: 127 ICGAVVSVRFQEDIISIWNKTASDQA 152

>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g Cap Length = 189

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 84/137 (61%), Gaps = 8/137 (5%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL+  W  W+       +   W   ++ +  F +VE+FWSLYN+I   S L  G+D+Y 
Sbjct: 3   HPLQCHWALWY---LKADRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYL 59
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICGAV 164
           FK  I+P WED     GG+W V+  K K     D  WL  L+A+IGEQF D+G+ ICGAV
Sbjct: 60  FKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAV 119
Query: 165 VNVRARQEKISLWTKNA 181
           VNVR + +K+SLWT+++
Sbjct: 120 VNVRQKGDKVSLWTRDS 136

>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp, Nmr, 20 Structures Length = 213

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 82/139 (58%), Gaps = 6/139 (4%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL   WT W+  P A  K  +W   +R + +F +VEEFW++  NI  P +L + +D++ 
Sbjct: 37  HPLNTKWTLWYTKP-AVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHV 95
Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS---DTSWLYTLLAMIGEQFDHGD-EICGAVV 165
           F+N + P+WED   A GGKW+    +GK    D  WL TLLA+IGE  D  D +I G V+
Sbjct: 96  FRNDVRPEWEDEANAKGGKWSFQL-RGKGADIDELWLRTLLAVIGETIDEDDSQINGVVL 154
Query: 166 NVRARQEKISLWTKNASNE 184
           ++R    K +LWTK+   E
Sbjct: 155 SIRKGGNKFALWTKSEDKE 173

>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation Factor Eif4e In Complex With M7gdp And Eif4gi Residues 393 To 490 Length = 213

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 81/138 (58%), Gaps = 4/138 (2%)
Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL   WT W+  P A  K  +W   +R + +F +VEEFW++  NI  P +L + +D++ 
Sbjct: 37  HPLNTKWTLWYTKP-AVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHV 95
Query: 110 FKNKIEPKWEDPVCANGGKWTV-IFPKGKS-DTSWLYTLLAMIGEQFDHGD-EICGAVVN 166
           F+N + P+WED   A GGKW+  +  KG   D  WL TLLA+IGE  D  D +I G V++
Sbjct: 96  FRNDVRPEWEDEANAKGGKWSFQLCGKGADIDELWLCTLLAVIGETIDEDDSQINGVVLS 155
Query: 167 VRARQEKISLWTKNASNE 184
           +R    K +LWTK    E
Sbjct: 156 IRKGGNKFALWTKCEDKE 173

>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With M7gpppa And 4e-Bp Length = 189

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 7/140 (5%)
Query: 49  PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFY 108
           PHPL+ SW+++    F   K   W   +  + TFS++E+FWS+  +   P ++  G D Y
Sbjct: 9   PHPLQDSWSYYL---FQFRKALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLY 65
Query: 109 CFKNKIEPKWEDPVCANGGKWTV-IFPKGKSDTSWLYTLLAMIGEQFDHGDE---ICGAV 164
            FK+ I PKWEDP   NGG+W + +  +   D  W   L+ +IG  +D  +E   ICGAV
Sbjct: 66  MFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAV 125
Query: 165 VNVRARQEKISLWTKNASNE 184
              R+R  K+S+W  + + E
Sbjct: 126 FQPRSRGSKLSVWLTSDNEE 145

>pdb|4B6V|A Chain A, The Third Member Of The Eif4e Family Represses Gene Expression Via A Novel Mode Of Recognition Of The Methyl-7 Guanosine Cap Moiety Length = 207

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 51  PLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCF 110
           PL   WTFW D     +  A   S+++ IYT  +V+ FWS+YNNI   + L +   ++  
Sbjct: 31  PLHSPWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTSLPLRCSYHLM 90
Query: 111 KNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDH----GDEICGAVVN 166
           + +  P WE+   A GG W +  PK  + T W   LLA IGEQF       DEI G  V+
Sbjct: 91  RGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAAADDEIIGVSVS 150
Query: 167 VRARQEKISLWTKNAS 182
           VR R++ + +W  NAS
Sbjct: 151 VRDREDVVQVWNVNAS 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
2idr_A	177	Eukaryotic translation initiation factor 4E-1; euk	8e-60
3hxi_A	189	Eukaryotic translation initiation 4E; protein-mRNA	1e-49
2jgb_A	195	Eukaryotic translation initiation factor 4E type 2	2e-49
1ap8_A	213	Translation initiation factor EIF4E; RNA CAP; HET:	3e-49
3m94_A	189	Translation initiation factor 4E; EIF4E, berkeley	8e-49
1l8b_A	190	Eukaryotic translation initiation factor 4E; eukar	1e-48
1ipb_A	217	Eukaryotic translation initiation factor 4E; prote	2e-48

>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A* Length = 177

 Score =  183 bits (466), Expect = 8e-60
 Identities = 103/138 (74%), Positives = 124/138 (89%)

Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPLE++WTFWFDNP  KS+Q  WGS++  I+TFS+VE+FW LYNNIH+PSKL VGADF+C
Sbjct: 2   HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHC 61

Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRA 169
           FKNKIEPKWEDP+CANGGKWT+   +GKSDT WL+TLLAMIGEQFD GDEICGAVV+VR 
Sbjct: 62  FKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQ 121

Query: 170 RQEKISLWTKNASNEAAQ 187
           +QE++++WTKNA+NEAAQ
Sbjct: 122 KQERVAIWTKNAANEAAQ 139

>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} PDB: 3hxg_A* Length = 189

 Score =  158 bits (400), Expect = 1e-49
 Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 7/149 (4%)

Query: 43  TAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLA 102
               + PHPL+ SW+++        K   W   +  + TFS++E+FWS+  +   P ++ 
Sbjct: 3   LGSPEFPHPLQDSWSYYLFQF---RKALDWDECLEKVATFSTIEDFWSVLTHTVRPREIT 59

Query: 103 VGADFYCFKNKIEPKWEDPVCANGGKWTVIFP-KGKSDTSWLYTLLAMIGEQFD---HGD 158
            G D Y FK+ I PKWEDP   NGG+W +    +   D  W   L+ +IG  +D      
Sbjct: 60  YGKDLYMFKSDIMPKWEDPKNENGGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDR 119

Query: 159 EICGAVVNVRARQEKISLWTKNASNEAAQ 187
           +ICGAV   R+R  K+S+W  + + E   
Sbjct: 120 QICGAVFQPRSRGSKLSVWLTSDNEEETI 148

>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A Length = 195

 Score =  158 bits (400), Expect = 2e-49
 Identities = 59/142 (41%), Positives = 90/142 (63%), Gaps = 2/142 (1%)

Query: 48  QPHPLEHSWTFWFD--NPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGA 105
             HPL++++TFW+    P   +   ++  +++ I TF+SVE+FW  Y+++  P  L   +
Sbjct: 13  AEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHS 72

Query: 106 DFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVV 165
           DF+ FK  I+P WED    NGGKW +   KG +   W   +LAM+GEQF  G+EICGAVV
Sbjct: 73  DFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVV 132

Query: 166 NVRARQEKISLWTKNASNEAAQ 187
           +VR +++ IS+W K AS++A  
Sbjct: 133 SVRFQEDIISIWNKTASDQATT 154

>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A* Length = 213

 Score =  158 bits (400), Expect = 3e-49
 Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 4/174 (2%)

Query: 15  NTKNPNPSEEEELEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGS 74
           + +  +   EE +   +     ++  + +A     HPL   WT W+  P A  K  +W  
Sbjct: 2   SVEEVSKKFEENVSVDDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTKP-AVDKSESWSD 60

Query: 75  SMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFP 134
            +R + +F +VEEFW++  NI  P +L + +D++ F+N + P+WED   A GGKW+    
Sbjct: 61  LLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLR 120

Query: 135 KGKSDTS--WLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEA 185
              +D    WL TLLA+IGE  D    +I G V+++R    K +LWTK+   E 
Sbjct: 121 GKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDKEP 174

>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} PDB: 3m93_A* Length = 189

 Score =  156 bits (394), Expect = 8e-49
 Identities = 59/143 (41%), Positives = 84/143 (58%), Gaps = 8/143 (5%)

Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL+  W  W+       +   W   ++ +  F +VE+FWSLYN+I   S L  G+D+Y 
Sbjct: 3   HPLQCHWALWYLKA---DRSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYL 59

Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQ-FDHGDEICGAV 164
           FK  I+P WED     GG+W V+  K K     D  WL  L+A+IGEQ  D+G+ ICGAV
Sbjct: 60  FKEGIKPMWEDENNVKGGRWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAV 119

Query: 165 VNVRARQEKISLWTKNASNEAAQ 187
           VNVR + +K+SLWT+++  +   
Sbjct: 120 VNVRQKGDKVSLWTRDSLKDDVN 142

>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A* Length = 190

 Score =  155 bits (393), Expect = 1e-48
 Identities = 63/145 (43%), Positives = 85/145 (58%), Gaps = 8/145 (5%)

Query: 48  QPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADF 107
             HPL++ W  WF       K  TW +++R I  F +VE+FW+LYN+I   S L  G D+
Sbjct: 8   IKHPLQNRWALWFFKN---DKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDY 64

Query: 108 YCFKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQF-DHGDEICG 162
             FK+ IEP WED     GG+W +   K +     D  WL TLL +IGE F D+ D++CG
Sbjct: 65  SLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCG 124

Query: 163 AVVNVRARQEKISLWTKNASNEAAQ 187
           AVVNVRA+ +KI++WT    N  A 
Sbjct: 125 AVVNVRAKGDKIAIWTTECENRDAV 149

>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B* Length = 217

 Score =  156 bits (395), Expect = 2e-48
 Identities = 66/177 (37%), Positives = 93/177 (52%), Gaps = 8/177 (4%)

Query: 16  TKNPNPSEEEELEEGEIVGDDESSKNSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSS 75
           T  P  +        E    + + + +       HPL++ W  WF       K  TW ++
Sbjct: 3   TVEPETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKN---DKSKTWQAN 59

Query: 76  MRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPK 135
           +R I  F +VE+FW+LYN+I   S L  G D+  FK+ IEP WED     GG+W +   K
Sbjct: 60  LRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNK 119

Query: 136 GKS----DTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQ 187
            +     D  WL TLL +IGE F D+ D++CGAVVNVRA+ +KI++WT    N  A 
Sbjct: 120 QQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAV 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
2idr_A	177	Eukaryotic translation initiation factor 4E-1; euk	100.0
2jgb_A	195	Eukaryotic translation initiation factor 4E type 2	100.0
1ap8_A	213	Translation initiation factor EIF4E; RNA CAP; HET:	100.0
1l8b_A	190	Eukaryotic translation initiation factor 4E; eukar	100.0
1ipb_A	217	Eukaryotic translation initiation factor 4E; prote	100.0
3m94_A	189	Translation initiation factor 4E; EIF4E, berkeley	100.0
3hxi_A	189	Eukaryotic translation initiation 4E; protein-mRNA	100.0
4axg_A	248	Eukaryotic translation initiation factor 4E; 4E-BP	100.0
1ztp_A	251	Basophilic leukemia expressed protein BLES03; HS.4	98.76

>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*

Probab=100.00  E-value=3.6e-54  Score=351.40  Aligned_cols=140  Identities=74%  Similarity=1.349  Sum_probs=133.8

Q ss_pred             CCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCCCCcE
Q 029621           49 PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGK  128 (190)
Q Consensus        49 ~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~~GG~  128 (190)
                      +|||+++|||||+.+..+.+..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++|||
T Consensus         1 ~HpL~~~Wt~W~~~~~~~~~~~~y~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WED~~N~~GG~   80 (177)
T 2idr_A            1 AHPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGK   80 (177)
T ss_dssp             CCEEEEEEEEEEECTTCSSCEEETTEEECCEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEEGGGCCSTTCCTTTTCEE
T ss_pred             CCCCCCeEEEEEEcCCCCCcccchHhhCeEEEEEcCHHHHHHHHhcCCCHHHCCCCCEEEEEcCCceecccCCCCCCCCE
Confidence            59999999999998876566789999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCChHHHHHHHHHHHhcCCCCCCCCeeeEEEEEcCCCcEEEEecCCCCChhhhh
Q 029621          129 WTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQV  188 (190)
Q Consensus       129 w~i~~~k~~~d~~We~lll~~IGe~f~~~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~~  188 (190)
                      |+|+++|..+|.+|++|||++|||+|+.+++|||||+|+|+++++|+||+++++++++++
T Consensus        81 w~i~~~k~~~d~~W~~lll~~IGe~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~  140 (177)
T 2idr_A           81 WTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQI  140 (177)
T ss_dssp             EEEEECTTCCHHHHHHHHHHHHTTCSTTGGGEEEEEEEECSSCEEEEEEESCTTCHHHHH
T ss_pred             EEEEECcCcHHHHHHHHHHHHhcCcCCCCCceEEEEEEEecCCcEEEEEcCCCCCHHHHH
Confidence            999999999999999999999999999889999999999999999999999999887653

>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A

Probab=100.00  E-value=1.4e-52  Score=346.71  Aligned_cols=144  Identities=40%  Similarity=0.804  Sum_probs=134.0

Q ss_pred             CCCCCCCCCcceEEEEECCCC--cccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCC
Q 029621           45 VMQQPHPLEHSWTFWFDNPFA--KSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPV  122 (190)
Q Consensus        45 ~~~~~hpL~~~Wt~W~~~~~~--~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~  122 (190)
                      .....|||+++|||||+....  +.+..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+
T Consensus        10 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~   89 (195)
T 2jgb_A           10 PGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDA   89 (195)
T ss_dssp             CCTTCCEEEEEEEEEEEEECTTCCCCHHHHHHHEEEEEEEEEHHHHHHHHTTSCCGGGCCSEEEEEEEETTCCSSTTSTT
T ss_pred             CCCCcCccCCeEEEEEEcCCCCCccchhhhhhhceEEEEEecHHHHHHHHhcCCChHHCCCCceEEEEeCCCcccccCCC
Confidence            356789999999999997532  234678999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEecCCChHHHHHHHHHHHhcCCCCCCCCeeeEEEEEcCCCcEEEEecCCCCChhhhh
Q 029621          123 CANGGKWTVIFPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQV  188 (190)
Q Consensus       123 N~~GG~w~i~~~k~~~d~~We~lll~~IGe~f~~~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~~  188 (190)
                      |++||||+|+++|..+|.+|++|||++|||+|+.+++|||||+|+|.++++|+||++++++++++.
T Consensus        90 N~~GGkw~i~~~k~~~d~~W~~llLa~IGE~f~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~  155 (195)
T 2jgb_A           90 NKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTA  155 (195)
T ss_dssp             TTTCEEEEEEECTTCHHHHHHHHHHHHHTTCSCCTTCEEEEEEEECSSCEEEEEEESCTTCHHHHH
T ss_pred             CCCCcEEEEEeCcccHHHHHHHHHHHHhcCCCCCCCceeeeEEEEecCCcEEEEEcCCCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999887643

>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*

Probab=100.00  E-value=6.9e-52  Score=346.84  Aligned_cols=141  Identities=38%  Similarity=0.853  Sum_probs=129.9

Q ss_pred             CCCCCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCC
Q 029621           45 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCA  124 (190)
Q Consensus        45 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~  124 (190)
                      .....|||+++|||||+.+.. .+..+|.++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|+
T Consensus        32 ~~~~~hpL~~~Wt~W~~~~~~-~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~  110 (213)
T 1ap8_A           32 HFDVKHPLNTKWTLWYTKPAV-DKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANA  110 (213)
T ss_dssp             CCCCSSEEEEEEEEEEECCCG-GGTSCHHHHCEEEEEEEESHHHHHHHHTCCTTTTSCSCCEEEEECSSCCSCTTTTTTT
T ss_pred             CCCCccccCCcEEEEEEcCCc-ccccchhhhceEEEEEccHHHHHHHHHcCCChHHCCCCCEEEEEcCCceecccCCCCC
Confidence            355899999999999998865 3467899999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEec-C-CChHHHHHHHHHHHhcCCCCCCC-CeeeEEEEEcCCCcEEEEecCCCCChhhh
Q 029621          125 NGGKWTVIFP-K-GKSDTSWLYTLLAMIGEQFDHGD-EICGAVVNVRARQEKISLWTKNASNEAAQ  187 (190)
Q Consensus       125 ~GG~w~i~~~-k-~~~d~~We~lll~~IGe~f~~~~-~I~Giv~s~R~~~~rIsIW~~~~~~~~~~  187 (190)
                      +||||+|+++ + ..+|.+|++|||++|||+|+..+ +|||||+|+|++.++|+||++++ +++++
T Consensus       111 ~GGkw~i~~~~k~~~~d~~W~~llLa~IGE~f~~~~deIcGvvvsvR~~~~~IsIW~~~~-~~~~~  175 (213)
T 1ap8_A          111 KGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSE-DKEPL  175 (213)
T ss_dssp             TSEEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEEEEEESSS-CHHHH
T ss_pred             CCCEEEEEECCCcchHHHHHHHHHHHHhcCcccCCCCcEeEEEEEeecCCcEEEEEcCCC-CHHHH
Confidence            9999999984 3 47899999999999999998766 89999999999999999999999 66654

>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*

Probab=100.00  E-value=3.9e-52  Score=342.75  Aligned_cols=140  Identities=44%  Similarity=0.884  Sum_probs=128.6

Q ss_pred             CCCCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCCC
Q 029621           46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN  125 (190)
Q Consensus        46 ~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~~  125 (190)
                      ....|||+++|||||+.+..   ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++
T Consensus         6 ~~~~hpL~~~Wt~W~~~~~~---~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~~y~lFK~gI~P~WED~~N~~   82 (190)
T 1l8b_A            6 HYIKHPLQNRWALWFFKNDK---SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR   82 (190)
T ss_dssp             ---CCEEEEEEEEEEEECCS---SSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTT
T ss_pred             ccccCCCCCeEEEEEEcCCC---ccchhhhceEEEEEecHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCC
Confidence            45789999999999998763   468999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEecCCC----hHHHHHHHHHHHhcCCC-CCCCCeeeEEEEEcCCCcEEEEecCCCCChhhhh
Q 029621          126 GGKWTVIFPKGK----SDTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQV  188 (190)
Q Consensus       126 GG~w~i~~~k~~----~d~~We~lll~~IGe~f-~~~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~~  188 (190)
                      ||||+|+++|..    +|.+|++|||++|||+| +.+++|||||+|+|+++++|+||++++++++++.
T Consensus        83 GG~w~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~  150 (190)
T 1l8b_A           83 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVT  150 (190)
T ss_dssp             CEEEEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEEEESCTTCHHHHH
T ss_pred             CCEEEEEecCccCcchHHHHHHHHHHHHhhcccccCCCceeeEEEEeecCCcEEEEEcCCCCCHHHHH
Confidence            999999998753    59999999999999999 5688999999999999999999999999887643

>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*

Probab=100.00  E-value=7.2e-52  Score=347.58  Aligned_cols=140  Identities=44%  Similarity=0.885  Sum_probs=130.6

Q ss_pred             CCCCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCCC
Q 029621           46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN  125 (190)
Q Consensus        46 ~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~~  125 (190)
                      ....|||+++|||||+.+..   ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++
T Consensus        33 ~~~~hpL~~~Wt~W~~~~~~---~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~GI~P~WEDp~N~~  109 (217)
T 1ipb_A           33 HYIKHPLQNRWALWFFKNDK---SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKR  109 (217)
T ss_dssp             GTSCCEEEEEEEEEEECCCT---TSCTGGGEEEEEEEEEHHHHHHHHHHSCCGGGSCTTCEEEEEETTCCSSTTSTTTTT
T ss_pred             cccCCCCCCeEEEEEEeCCc---ccchhhhceEEEEEccHHHHHHHHHcCCCHHHCCCCCEEEEECCCceecccCCCCCC
Confidence            45689999999999998753   578999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEecCCC----hHHHHHHHHHHHhcCCC-CCCCCeeeEEEEEcCCCcEEEEecCCCCChhhhh
Q 029621          126 GGKWTVIFPKGK----SDTSWLYTLLAMIGEQF-DHGDEICGAVVNVRARQEKISLWTKNASNEAAQV  188 (190)
Q Consensus       126 GG~w~i~~~k~~----~d~~We~lll~~IGe~f-~~~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~~  188 (190)
                      ||||+|+++|..    +|.+|++|||++|||+| +.+++|||||+|+|+++++|+||++++++++++.
T Consensus       110 GGkw~i~~~k~~~~~~ld~~W~~llLa~IGE~f~~~~d~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~  177 (217)
T 1ipb_A          110 GGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVT  177 (217)
T ss_dssp             CEEEEEECCTTHHHHTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEECCTTCCEEEEEESCTTCHHHHH
T ss_pred             CCEEEEEeccccCcchHHHHHHHHHHHHhhccccccCCccceEEEEeecCCcEEEEECCCCCCHHHHH
Confidence            999999999864    59999999999999999 6788999999999999999999999999887643

>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*

Probab=100.00  E-value=4e-51  Score=336.76  Aligned_cols=138  Identities=42%  Similarity=0.918  Sum_probs=128.7

Q ss_pred             CCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCCCCc
Q 029621           48 QPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGG  127 (190)
Q Consensus        48 ~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~~GG  127 (190)
                      +.|||+++|||||+.+.   ...+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++||
T Consensus         1 ~~HpL~~~Wt~W~~~~~---~~~~y~~~l~~i~tf~TVE~FW~~yn~i~~ps~L~~~~dy~lFK~gI~P~WED~~N~~GG   77 (189)
T 3m94_A            1 MRHPLQCHWALWYLKAD---RSKDWEDCLKQVAVFDTVEDFWSLYNHIQAASGLTWGSDYYLFKEGIKPMWEDENNVKGG   77 (189)
T ss_dssp             CCCEEEEEEEEEEECCC---SSSCGGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTCEEEEEETTCCSSTTSTTTTTCE
T ss_pred             CCCCCCCcEEEEEECCC---CccChhhhceEEEEEecHHHHHHHhhCCCChhHCCCCCeEEEecCCcccCCCCCCCCCCC
Confidence            47999999999998764   357899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCC----ChHHHHHHHHHHHhcCCCC-CCCCeeeEEEEEcCCCcEEEEecCCCCChhhhh
Q 029621          128 KWTVIFPKG----KSDTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQV  188 (190)
Q Consensus       128 ~w~i~~~k~----~~d~~We~lll~~IGe~f~-~~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~~  188 (190)
                      +|+|+++|.    .+|.+|++|||++|||+|+ .+++|||||+|+|+++++|+||++++++++++.
T Consensus        78 kw~i~~~k~~~~~~~d~~W~~lll~~IGe~f~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~  143 (189)
T 3m94_A           78 RWLVVVDKQKRAQLLDHYWLELLMAIIGEQFEDNGEYICGAVVNVRQKGDKVSLWTRDSLKDDVNL  143 (189)
T ss_dssp             EEEEEECTTTHHHHHHHHHHHHHHHHHTTCSGGGGGGEEEEEEECCSSCEEEEEEESCTTCHHHHH
T ss_pred             EEEEEecCccccchHHHHHHHHHHHHhCCcccccCCcCceEEEEEecCCcEEEEECCCCCCHHHHH
Confidence            999999875    3699999999999999995 688999999999999999999999999887653

>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*

Probab=100.00  E-value=1.6e-51  Score=339.07  Aligned_cols=140  Identities=34%  Similarity=0.764  Sum_probs=130.3

Q ss_pred             CCCCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCCC
Q 029621           46 MQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCAN  125 (190)
Q Consensus        46 ~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~~  125 (190)
                      +...|||+++|||||+.+..   ..+|+++|++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|++
T Consensus         6 ~~~~HpL~~~Wt~W~~~~~~---~~~~~~~l~~i~~f~TVE~FW~~yn~i~~ps~L~~~~d~~lFK~gI~P~WED~~N~~   82 (189)
T 3hxi_A            6 PEFPHPLQDSWSYYLFQFRK---ALDWDECLEKVATFSTIEDFWSVLTHTVRPREITYGKDLYMFKSDIMPKWEDPKNEN   82 (189)
T ss_dssp             -CCCCEEEEEEEEEEECCCT---TCCGGGGEEEEEEEEEHHHHHHHHHTSCCTTTCCTTCEEEEEETTSCSSTTSHHHHT
T ss_pred             CCccCCCCCeEEEEEECCCC---ccChhhhceEEEEEeeHHHHHHHHHhCCChHHCCCCceEEEECCCcccCCCCcCCCC
Confidence            56789999999999998753   368999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEecCC-ChHHHHHHHHHHHhcCCC-CCCCC--eeeEEEEEcCCCcEEEEecCCCCChhhhh
Q 029621          126 GGKWTVIFPKG-KSDTSWLYTLLAMIGEQF-DHGDE--ICGAVVNVRARQEKISLWTKNASNEAAQV  188 (190)
Q Consensus       126 GG~w~i~~~k~-~~d~~We~lll~~IGe~f-~~~~~--I~Giv~s~R~~~~rIsIW~~~~~~~~~~~  188 (190)
                      ||||+|+++|. .+|.+|++|||++|||+| +.+++  |||||+|+|+++++|+||+++++++++++
T Consensus        83 GGkw~i~~~k~~~~d~~W~~lll~~IGe~f~~~~~~~~IcGvvvsvR~~~~~IsIW~~~~~~~~~~~  149 (189)
T 3hxi_A           83 GGRWLINVTARQDVDFLWDELLMLLIGSDWDTDEEDRQICGAVFQPRSRGSKLSVWLTSDNEEETIL  149 (189)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHTTCCSSHHHHHHEEEEEEECCTTCCEEEEEESCSCCHHHHH
T ss_pred             CcEEEEEecCCCcHHHHHHHHHHHHhcCcccccCCCceeeeEEEEeccCCcEEEEEcCCCCCHHHHH
Confidence            99999999997 589999999999999999 55667  99999999999999999999999887654

>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}

Probab=100.00  E-value=1.1e-49  Score=340.17  Aligned_cols=141  Identities=43%  Similarity=0.907  Sum_probs=130.7

Q ss_pred             CCCCCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCC
Q 029621           45 VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCA  124 (190)
Q Consensus        45 ~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~  124 (190)
                      .....|||+++|||||+.+..   ..+|.+++++|++|+|||+||++|+||++|++|+.+++|||||+||+||||||+|+
T Consensus        65 ~~~~kHpL~~~WtlW~~~~~~---~~~~~~~l~~I~~f~TVE~FW~~yn~i~~ps~l~~~~~~~lFK~gI~P~WED~~N~  141 (248)
T 4axg_A           65 EHLYKHPLMNVWTLWYLENDR---SKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANK  141 (248)
T ss_dssp             -CCCCCEEEEEEEEEEESCSC---CCTTBCCEEEEEEEEEHHHHHHHHTTBCCTTSSCTTEEEEEEETTCCSSSSSTTTT
T ss_pred             ccccCCCCCCeEEEEEeeCCC---ccchHHhCeEEEEEcCHHHHHHHHHcCCCHHHCCCCceEEEEcCCcccCCCCccCC
Confidence            455789999999999997653   46799999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEecCCC---hHHHHHHHHHHHhcCCCCCCCCeeeEEEEEcCCCcEEEEecCCCCChhhhh
Q 029621          125 NGGKWTVIFPKGK---SDTSWLYTLLAMIGEQFDHGDEICGAVVNVRARQEKISLWTKNASNEAAQV  188 (190)
Q Consensus       125 ~GG~w~i~~~k~~---~d~~We~lll~~IGe~f~~~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~~  188 (190)
                      +||+|+|++.|..   +|.+|++|||+||||+|+.+++|||||+|+|+++++|+||++++++++.++
T Consensus       142 ~GG~w~~~~~k~~~~~~d~~W~~lll~~IGe~~~~~~~I~Gi~is~R~~~~~I~IW~~~~~~~~~~~  208 (248)
T 4axg_A          142 QGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAAL  208 (248)
T ss_dssp             TCEEEEEEEETCCHHHHHHHHHHHHHHHHTTCSSCGGGEEEEEEEECSSEEEEEEEESCTTCHHHHH
T ss_pred             CccEEEEEecccchhHHHHHHHHHHHHHHhCcCCCCCceeceEEEecCCCCEEEEeCCCCcCHHHHH
Confidence            9999999998754   589999999999999999889999999999999999999999999987653

>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512, structural genomics, Pro structure initiative, PSI, CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB: 2q4k_A

Probab=98.76  E-value=7.9e-09  Score=87.85  Aligned_cols=63  Identities=21%  Similarity=0.317  Sum_probs=56.3

Q ss_pred             CCCCCCcEEEEEecC-CChHHHHHHHHHHHhcCCCCCCCCeeeEEEEEcCC---CcEEEEecCCCCChhhhhc
Q 029621          121 PVCANGGKWTVIFPK-GKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRAR---QEKISLWTKNASNEAAQVT  189 (190)
Q Consensus       121 p~N~~GG~w~i~~~k-~~~d~~We~lll~~IGe~f~~~~~I~Giv~s~R~~---~~rIsIW~~~~~~~~~~~~  189 (190)
                      +.|..||||+|.+.+ ..+|.+|..+++++|+++      +||++|+.|.+   ..+|+||+++..+.+++++
T Consensus       121 ~~nv~gGKWLIfl~k~~~VD~iW~~I~~ali~g~------L~gAKVstr~~~~~~~vIcVYT~D~~D~edV~R  187 (251)
T 1ztp_A          121 THHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGR------LQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLE  187 (251)
T ss_dssp             HHTCCCEEEEEEECSSHHHHHHHHHHHHHHHHTS------CSEEEECCBCSSSCCEEEEEEESCTTCHHHHHH
T ss_pred             HcCCCCceEEEecChHHHHHHHHHHHHHHHHhCc------eeEEEEecCCCCCCCCEEEEECCCcCCHHHHHH
Confidence            458999999999988 679999999999999654      49999999986   7999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d1l8ba_	182	d.86.1.1 (A:) Translation initiation factor eIF4e	4e-51
d1ap8a_	213	d.86.1.1 (A:) Translation initiation factor eIF4e	3e-47

>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]} Length = 182

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  160 bits (406), Expect = 4e-51
 Identities = 63/143 (44%), Positives = 85/143 (59%), Gaps = 8/143 (5%)

Query: 50  HPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYC 109
           HPL++ W  WF       K  TW +++R I  F +VE+FW+LYN+I   S L  G D+  
Sbjct: 2   HPLQNRWALWFFKN---DKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSL 58

Query: 110 FKNKIEPKWEDPVCANGGKWTVIFPKGKS----DTSWLYTLLAMIGEQFD-HGDEICGAV 164
           FK+ IEP WED     GG+W +   K +     D  WL TLL +IGE FD + D++CGAV
Sbjct: 59  FKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAV 118

Query: 165 VNVRARQEKISLWTKNASNEAAQ 187
           VNVRA+ +KI++WT    N  A 
Sbjct: 119 VNVRAKGDKIAIWTTECENRDAV 141

>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  151 bits (383), Expect = 3e-47
 Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 8/168 (4%)

Query: 25  EELEEGEIVGDDESSK----NSTAVMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIY 80
           ++ EE   V D  ++     + +A     HPL   WT W+  P A  K  +W   +R + 
Sbjct: 8   KKFEENVSVDDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTKP-AVDKSESWSDLLRPVT 66

Query: 81  TFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKGKS-- 138
           +F +VEEFW++  NI  P +L + +D++ F+N + P+WED   A GGKW+       +  
Sbjct: 67  SFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLRGKGADI 126

Query: 139 DTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEA 185
           D  WL TLLA+IGE  D    +I G V+++R    K +LWTK+   E 
Sbjct: 127 DELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDKEP 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d1ap8a_	213	Translation initiation factor eIF4e {Baker's yeast	100.0
d1l8ba_	182	Translation initiation factor eIF4e {Mouse (Mus mu	100.0

>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-47  Score=316.60  Aligned_cols=162  Identities=35%  Similarity=0.765  Sum_probs=135.7

Q ss_pred             CchhhhccCcccCCCCCccCcCC----CCCCCCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccc
Q 029621           22 SEEEELEEGEIVGDDESSKNSTA----VMQQPHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHH   97 (190)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~   97 (190)
                      +..++.+++.+......+..+..    .....|||+++|||||+.+... +..+|.+++++|++|+|||+||++|++|++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kHpL~~~Wt~wy~~~~~~-~~~~y~~~l~~I~~f~TvE~Fw~~~~~i~~   83 (213)
T d1ap8a_           5 EVSKKFEENVSVDDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTKPAVD-KSESWSDLLRPVTSFQTVEEFWAIIQNIPE   83 (213)
T ss_dssp             CSCCCCCCCCSSSCCCCSSCCSCCCCCCCCCSSEEEEEEEEEEECCCGG-GTSCHHHHCEEEEEEEESHHHHHHHHTCCT
T ss_pred             hhhhhhhccccccCCCCCCcccccCCCcCCcCCcCCCcEEEEEEcCCCC-cccchhhhceEEEEEccHHHHHHHHHhCCC
Confidence            34445555554544444332222    2234699999999999987643 467899999999999999999999999999


Q ss_pred             cccCcccceeeeecCCCccCCCCCCCCCCcEEEEEecCC--ChHHHHHHHHHHHhcCCCCC-CCCeeeEEEEEcCCCcEE
Q 029621           98 PSKLAVGADFYCFKNKIEPKWEDPVCANGGKWTVIFPKG--KSDTSWLYTLLAMIGEQFDH-GDEICGAVVNVRARQEKI  174 (190)
Q Consensus        98 ps~L~~~~~~~lFK~gI~P~WEDp~N~~GG~w~i~~~k~--~~d~~We~lll~~IGe~f~~-~~~I~Giv~s~R~~~~rI  174 (190)
                      |++|+.+++|+|||+||+|+||||+|++||+|+|++++.  .++.+|++|||++|||+|.. .+.||||++|+|++.++|
T Consensus        84 ps~l~~~~~~~lFk~gI~P~WED~~N~nGG~~~~~i~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i  163 (213)
T d1ap8a_          84 PHELPLKSDYHVFRNDVRPEWEDEANAKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKF  163 (213)
T ss_dssp             TTTSCSCCEEEEECSSCCSCTTTTTTTTSEEEEEEECSCCSSSHHHHHHHHHHHTSTTTCSSTTTEEEEEEECCTTCEEE
T ss_pred             HHHCCcccEEEEEecCccCCCCCcccCCCCEEEEEEccCCCcHHHHHHHHHHHHHhcccccCCCEEeeEEEEecCCceEE
Confidence            999999999999999999999999999999999999764  57999999999999999964 557999999999999999


Q ss_pred             EEecCCCCCh
Q 029621          175 SLWTKNASNE  184 (190)
Q Consensus       175 sIW~~~~~~~  184 (190)
                      +||+++.+.+
T Consensus       164 ~IW~~~~~~~  173 (213)
T d1ap8a_         164 ALWTKSEDKE  173 (213)
T ss_dssp             EEEESSSCHH
T ss_pred             EEEccCCchh
Confidence            9999987544

>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.1e-47  Score=308.39  Aligned_cols=136  Identities=45%  Similarity=0.922  Sum_probs=126.1

Q ss_pred             CCCCCcceEEEEECCCCcccccchhhhcceeeeeccHHHHHhhcccccccccCcccceeeeecCCCccCCCCCCCCCCcE
Q 029621           49 PHPLEHSWTFWFDNPFAKSKQATWGSSMRSIYTFSSVEEFWSLYNNIHHPSKLAVGADFYCFKNKIEPKWEDPVCANGGK  128 (190)
Q Consensus        49 ~hpL~~~Wt~W~~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~~yn~i~~ps~L~~~~~~~lFK~gI~P~WEDp~N~~GG~  128 (190)
                      .|||+++|||||+.+..   ..+|.+++++|++|+|||+||++|++|++|++|+.+++|+|||+||+|+||||+|++||+
T Consensus         1 kHpL~~~Wt~w~~~~~~---~~~~~~~~~~i~~f~tvE~Fw~~~~~i~~~~~l~~~~~~~lFk~gI~P~WED~~N~~GG~   77 (182)
T d1l8ba_           1 KHPLQNRWALWFFKNDK---SKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGR   77 (182)
T ss_dssp             CCEEEEEEEEEEEECCS---SSCTGGGEEEEEEEEEHHHHHHHHTTSCCGGGSCTTEEEEEEETTCCSSTTSTTTTTCEE
T ss_pred             CCCCCCeEEEEEEeCCC---CchhhhcceEEEEEcCHHHHHHHHHcCCChHHCCccceEEEEecCccCCCCCcccCCCCE
Confidence            59999999999998753   468999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEec----CCChHHHHHHHHHHHhcCCCC-CCCCeeeEEEEEcCCCcEEEEecCCCCChhhh
Q 029621          129 WTVIFP----KGKSDTSWLYTLLAMIGEQFD-HGDEICGAVVNVRARQEKISLWTKNASNEAAQ  187 (190)
Q Consensus       129 w~i~~~----k~~~d~~We~lll~~IGe~f~-~~~~I~Giv~s~R~~~~rIsIW~~~~~~~~~~  187 (190)
                      |+|+++    +..++.+|++||++||||+|. .+++||||++|+|++.++|+||++++++++.+
T Consensus        78 ~~~~i~~~~~~~~~~~~W~~lll~~IGe~~~~~~~~I~Gi~~s~r~~~~~i~IW~~~~~~~~~~  141 (182)
T d1l8ba_          78 WLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAV  141 (182)
T ss_dssp             EEEEEEGGGTTTTHHHHHHHHHHHHHTTTTGGGGGGEEEEEEEECSSEEEEEEEESCTTCHHHH
T ss_pred             EEEEECcccccchHHHHHHHHHHHHHhcccccCCCeeccEEEEecCCCcEEEEEeCCCccHHHH
Confidence            999996    356899999999999999996 46789999999999999999999999887653