Citrus Sinensis ID: 029626

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MAYNDQQNMQRLVLPTTSTNPPPPTWLNNAVRHHHHQNNDDDDDDEEEAPKNNKNNSASNDNGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGNLFPQHICVVG
Secondary Structure (PSIPRED)
ccccHHHHcccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHcHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEccccccccccccccccccccHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEc
Coil and Loop (DISEMBL)
mayndqqnmqrlvlpttstnpppptwlnnavrhhhhqnnddddddeeeapknnknnsasndngraedwetvkckaeivghPLYEQLLSAHVSCLriatpvdqlpkidaqLSRSRDVLAKYSAVangrvlddkELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQsltgnlfpqhicvvg
Flexible Loop (DISEMBL)
MAYNDQQNMQRlvlpttstnpppPTWLNNAVRHHHHQNNDDDDDDEEEAPknnknnsasndngraedWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAvangrvlddkeLDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGNLFPQHICVVG
Low Complexity Region (SEG)
MAYNDQQNMQRLVLpttstnpppptWLNNAVRHHHHQnnddddddeeeapknnknnsasndnGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGNLFPQHICVVG
Disordered region (IsUnstruct)
*******************************************************************WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGNLFPQHICVV*
Disordered Region (DISOPRED)
*************************************************************************KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDA**************************DQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGNLFP***C*V*
Disordered Region (DISEMBL)
********MQRLVLPTTSTNPPPPTWLNNAVRH*******************************AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGNLFPQHICVVG
Disordered Region (DISPRO)
****DQQNMQRLVLPTTSTNPPPPTWLNNAVR***********************************WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYS***NGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGNLFPQHICVVG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAYNDQQNMQRLVLPTTSTNPPPPTWLNNAVRHHHHQNNDDDDDDEEEAPKNNKNNSASNDNGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGNLFPQHICVVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
O22300	426	Homeobox protein knotted-	N/A	no	0.589	0.262	0.805	7e-48
P48000	431	Homeobox protein knotted-	yes	no	0.631	0.278	0.736	1e-47
O04136	427	Homeobox protein knotted-	N/A	no	0.594	0.264	0.778	3e-47
P48001	393	Homeobox protein knotted-	no	no	0.605	0.292	0.745	7e-46
Q0J6N4	374	Homeobox protein knotted-	yes	no	0.568	0.288	0.807	2e-44
P48002	383	Homeobox protein knotted-	no	no	0.594	0.295	0.678	2e-40
Q0E3C3	313	Homeobox protein knotted-	yes	no	0.557	0.338	0.700	2e-33
Q9FPQ8	291	Homeobox protein knotted-	no	no	0.568	0.371	0.620	4e-33
Q94LW4	323	Homeobox protein knotted-	yes	no	0.578	0.340	0.658	5e-33
P46606	294	Homeobox protein HD1 OS=B	N/A	no	0.568	0.367	0.605	1e-31

>sp|O22300|LET12_SOLLC Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum GN=LET12 PE=2 SV=1

 Score =  189 bits (481), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 91/113 (80%), Positives = 104/113 (92%), Gaps = 1/113 (0%)

Query: 68  WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGR 127
           WE  KCKA+I+ HPLY+QLLSAHVSCLRIATPVDQLP+IDAQL++S++V+AKYS +  G+
Sbjct: 158 WEREKCKADILNHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLAQSQNVVAKYSVLGQGQ 217

Query: 128 -VLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
             LDDK+LDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW+LEQSLQSLTG
Sbjct: 218 PPLDDKDLDQFMTHYVLLLSSFKEQLQQHVRVHAMEAVMACWELEQSLQSLTG 270

May have a role to play in formative events in ovule and embryo morphogenesis.
Solanum lycopersicum (taxid: 4081)

>sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1

 Score =  189 bits (479), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/129 (73%), Positives = 107/129 (82%), Gaps = 9/129 (6%)

Query: 60  NDNGRAE------DWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRS 113
           ND G A        W+  + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S
Sbjct: 140 NDGGGATAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQS 199

Query: 114 RDVLAKYSAV---ANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDL 170
           + V+AKYSA+   A G V DDKELDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW++
Sbjct: 200 QHVVAKYSALGAAAQGLVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEI 259

Query: 171 EQSLQSLTG 179
           EQSLQSLTG
Sbjct: 260 EQSLQSLTG 268

Arabidopsis thaliana (taxid: 3702)

>sp|O04136|KNAP3_MALDO Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1

 Score =  187 bits (475), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/113 (77%), Positives = 103/113 (91%)

Query: 67  DWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANG 126
           +W+  + KAEI+ HPLYE LLSAHV+CLRIATPVDQLP+IDAQL++S++V+AKYSA+ NG
Sbjct: 161 NWQNARHKAEILAHPLYEPLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGNG 220

Query: 127 RVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
            V DDKELDQFM +YVLLL SFKEQLQQHVRVHAMEAVMACW++EQSLQSLTG
Sbjct: 221 MVGDDKELDQFMRNYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTG 273

Malus domestica (taxid: 3750)

>sp|P48001|KNAT4_ARATH Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=2 SV=3

 Score =  183 bits (464), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 102/118 (86%), Gaps = 3/118 (2%)

Query: 65  AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVA 124
           AE W+  + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S++V+AKYS + 
Sbjct: 115 AERWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTLE 174

Query: 125 NGRVL---DDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
             + L   DDKELD FMTHYVLLL SFKEQLQQHVRVHAMEAVMACW++EQSLQS TG
Sbjct: 175 AAQGLLAGDDKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFTG 232

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J6N4|KNOSD_ORYSJ Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica GN=OSH45 PE=2 SV=2

 Score =  178 bits (451), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/109 (80%), Positives = 100/109 (91%), Gaps = 1/109 (0%)

Query: 72  KCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDD 131
           +CKAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S+ V+AKYSA+A     DD
Sbjct: 107 RCKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQGVVAKYSALAAAAAGDD 166

Query: 132 -KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
            +ELDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW+LEQ+LQSLTG
Sbjct: 167 GRELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQNLQSLTG 215

Isoform 3 acts as trancription activator, but isoforms 1 and 2 do not.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P48002|KNAT5_ARATH Homeobox protein knotted-1-like 5 OS=Arabidopsis thaliana GN=KNAT5 PE=1 SV=2

 Score =  165 bits (418), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/115 (67%), Positives = 95/115 (82%), Gaps = 2/115 (1%)

Query: 65  AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVA 124
            EDW +   KA I+ HP+YEQLL+AHV+CLR+ATPVDQ+P+IDAQLS+   V AKYS + 
Sbjct: 110 GEDWRSASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHTVAAKYSTL- 168

Query: 125 NGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
            G V+D+KELD FM+HYV+LL SFKEQLQ HV VHAMEA+ ACW++EQSLQSLTG
Sbjct: 169 -GVVVDNKELDHFMSHYVVLLCSFKEQLQHHVCVHAMEAITACWEIEQSLQSLTG 222

Arabidopsis thaliana (taxid: 3702)

>sp|Q0E3C3|KNOS2_ORYSJ Homeobox protein knotted-1-like 2 OS=Oryza sativa subsp. japonica GN=HOS58 PE=2 SV=2

 Score =  141 bits (356), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/107 (70%), Positives = 84/107 (78%), Gaps = 1/107 (0%)

Query: 74  KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDD-K 132
           KA +  HPLYE+LL AHV+CLR+ATPVDQLP+IDAQ++     LA  SA A        +
Sbjct: 43  KAAVAAHPLYERLLEAHVACLRVATPVDQLPRIDAQIAARPPPLAAASAAAAAGGPSGGE 102

Query: 133 ELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
           ELD FMTHYVLLL SFKEQLQQHVRVHAMEAVM CW+LEQSLQSLTG
Sbjct: 103 ELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMGCWELEQSLQSLTG 149

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FPQ8|KNAT7_ARATH Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=2 SV=1

 Score =  140 bits (354), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 85/108 (78%)

Query: 72  KCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDD 131
           + K EI  HP+YEQLL+AHV+CLR+ATP+DQLP I+AQLS+S  +L  Y++ A G   D 
Sbjct: 28  QLKGEIATHPMYEQLLAAHVACLRVATPIDQLPIIEAQLSQSHHLLRSYASTAVGYHHDR 87

Query: 132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
            ELD F+  YV++L SFKEQLQQHVRVHA+EAVMAC ++E +L SLTG
Sbjct: 88  HELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTG 135

May be involved in secondary cell wall biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94LW4|KNOSB_ORYSJ Homeobox protein knotted-1-like 11 OS=Oryza sativa subsp. japonica GN=HOS59 PE=2 SV=2

 Score =  140 bits (353), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 77/117 (65%), Positives = 88/117 (75%), Gaps = 7/117 (5%)

Query: 68  WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGR 127
           WE  + KA I  HPLYE+LL AHV+CLR+ATPVDQLP+IDAQ++     LA  +A A   
Sbjct: 44  WE--REKAAIAAHPLYERLLEAHVACLRVATPVDQLPRIDAQIAARPPPLAAATAAAAAA 101

Query: 128 VLDD-----KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
                    +ELD FMTHYVLLL SFKEQLQQHVRVHAMEAVMACW+LEQ+LQSLTG
Sbjct: 102 AAGGAPSGGEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTG 158

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P46606|HD1_BRANA Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/109 (60%), Positives = 85/109 (77%), Gaps = 1/109 (0%)

Query: 72  KCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDD 131
           + K EI  HP+Y+QLL+AHV+CLR+ATP+DQLP I+AQLS S  +L  Y++ A G    D
Sbjct: 30  QMKGEIATHPMYDQLLAAHVACLRVATPIDQLPIIEAQLSHSHHLLRSYASTAVGFSHHD 89

Query: 132 K-ELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
           + ELD F+  YV++L SFKEQLQQHVRVHA+EAVMAC ++E +L SLTG
Sbjct: 90  RQELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTG 138

Possible developmental regulator.

Brassica napus (taxid: 3708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
255565117	374	homeobox protein knotted-1, putative [Ri	0.884	0.449	0.556	2e-50
356562896	344	PREDICTED: homeobox protein knotted-1-li	0.773	0.427	0.658	6e-49
224142451	279	predicted protein [Populus trichocarpa]	0.678	0.462	0.709	6e-49
356548471	345	PREDICTED: homeobox protein knotted-1-li	0.778	0.428	0.658	7e-49
224091647	279	predicted protein [Populus trichocarpa]	0.678	0.462	0.709	7e-49
168199347	384	class 1 knox protein [Kalanchoe x hought	0.878	0.434	0.619	1e-48
296084578	413	unnamed protein product [Vitis vinifera]	0.815	0.375	0.574	4e-47
312282373	434	unnamed protein product [Thellungiella h	0.663	0.290	0.719	5e-47
356556581	369	PREDICTED: LOW QUALITY PROTEIN: homeobox	0.878	0.452	0.567	6e-47
163838594	391	class 2 knotted1-like protein [Nicotiana	0.589	0.286	0.805	7e-47

>gi|255565117|ref|XP_002523551.1| homeobox protein knotted-1, putative [Ricinus communis] gi|223537258|gb|EEF38890.1| homeobox protein knotted-1, putative [Ricinus communis]

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 108/194 (55%), Positives = 138/194 (71%), Gaps = 26/194 (13%)

Query: 1   MAYNDQQNMQRLVLPT------TSTNPPPPTWLNNAV---------RHHHHQNNDDDDDD 45
           MA+ D    Q +   T      +S+    PTWL+ AV         R+  H+N  D++  
Sbjct: 1   MAFQDHITQQEISFQTPLSASASSSASAGPTWLSKAVLMRNDDVLGRNRSHKN--DNNGG 58

Query: 46  EEEAPKNNKNNSASNDNGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPK 105
           +EE    +++N+         +WE  K KAEI+GHPLYEQLL+AHV+CLRIATPVDQL +
Sbjct: 59  QEEFFDGSEDNN---------NWERAKSKAEILGHPLYEQLLAAHVACLRIATPVDQLAR 109

Query: 106 IDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVM 165
           ID QL++S++V+AKYS + NG+V+D+KELDQFMTHYVLLL SFK+QLQQHVRVHAMEAVM
Sbjct: 110 IDTQLAQSQEVVAKYSVLGNGQVIDEKELDQFMTHYVLLLCSFKDQLQQHVRVHAMEAVM 169

Query: 166 ACWDLEQSLQSLTG 179
           ACW+LEQSLQSLTG
Sbjct: 170 ACWELEQSLQSLTG 183

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562896|ref|XP_003549704.1| PREDICTED: homeobox protein knotted-1-like 3-like [Glycine max]

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 104/158 (65%), Positives = 124/158 (78%), Gaps = 11/158 (6%)

Query: 22  PPPTWLNNAVRHHHHQNNDDDDDDEEEAPKNNKNNSASNDNGRAEDWETVKCKAEIVGHP 81
           PPPTWLNN      +    +  D E+   +NN++ S    N  +ED    + KA+I+GHP
Sbjct: 33  PPPTWLNNV-----NARQQNFLDTEKSVDRNNRSES----NCESEDLR--EYKADILGHP 81

Query: 82  LYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHY 141
           LY+QLLSAHVSCLRIATPVDQLP+IDAQL +S+ V+ KYSA+A+  V+D+KELDQFMTHY
Sbjct: 82  LYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALAHNGVVDEKELDQFMTHY 141

Query: 142 VLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
           VLLL +FKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG
Sbjct: 142 VLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142451|ref|XP_002324571.1| predicted protein [Populus trichocarpa] gi|222866005|gb|EEF03136.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 93/131 (70%), Positives = 111/131 (84%), Gaps = 2/131 (1%)

Query: 51  KNNKNNSASND--NGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDA 108
           +N  NN +  +  +  +++WE  KCKAEI+GHP YEQLL+AHV+CLRIATPVDQL +ID 
Sbjct: 1   ENTTNNGSEEELVDSVSDNWERAKCKAEILGHPFYEQLLAAHVACLRIATPVDQLARIDT 60

Query: 109 QLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACW 168
           QL+RS+DV+AKYS V  G V+D+KELDQFMTHY LLL SFK+QLQQHVRVHAMEAVMACW
Sbjct: 61  QLARSQDVIAKYSGVGCGHVVDEKELDQFMTHYALLLCSFKDQLQQHVRVHAMEAVMACW 120

Query: 169 DLEQSLQSLTG 179
           +LEQSLQSLTG
Sbjct: 121 ELEQSLQSLTG 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548471|ref|XP_003542625.1| PREDICTED: homeobox protein knotted-1-like 3-like [Glycine max]

 Score =  198 bits (504), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 104/158 (65%), Positives = 122/158 (77%), Gaps = 10/158 (6%)

Query: 22  PPPTWLNNAVRHHHHQNNDDDDDDEEEAPKNNKNNSASNDNGRAEDWETVKCKAEIVGHP 81
           PPPTWLNN   +   QN  D +         ++N S SN     E  +  + KA+I+GHP
Sbjct: 33  PPPTWLNNVNVNARQQNFLDSE------KSVDRNRSESN----CESEDLREYKADILGHP 82

Query: 82  LYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHY 141
           LY+QLLSAHVSCLRIATPVDQLP+IDAQL +S+ V+ KYSA+A+  V+D+KELDQFMTHY
Sbjct: 83  LYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALAHNGVVDEKELDQFMTHY 142

Query: 142 VLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
           VLLL +FKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG
Sbjct: 143 VLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091647|ref|XP_002309315.1| predicted protein [Populus trichocarpa] gi|222855291|gb|EEE92838.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (504), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 93/131 (70%), Positives = 113/131 (86%), Gaps = 2/131 (1%)

Query: 51  KNNKNNSASND--NGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDA 108
           +NN NN +  +  +  +++WE  KCKAEI+GHPLYEQLL+AHV+CLRIATPVDQL +ID 
Sbjct: 1   ENNTNNGSEEELIDSVSDNWERAKCKAEILGHPLYEQLLAAHVACLRIATPVDQLARIDT 60

Query: 109 QLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACW 168
           QL++S+DV+AKYS V    V+D+KELDQFMTHYV+LL SFK+QLQQHVRVHAMEAVMACW
Sbjct: 61  QLAQSQDVVAKYSGVGRSHVVDEKELDQFMTHYVILLCSFKDQLQQHVRVHAMEAVMACW 120

Query: 169 DLEQSLQSLTG 179
           +LEQSLQSLTG
Sbjct: 121 ELEQSLQSLTG 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168199347|gb|ABZ10964.1| class 1 knox protein [Kalanchoe x houghtonii]

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/168 (61%), Positives = 121/168 (72%), Gaps = 1/168 (0%)

Query: 12  LVLPTTSTNPPPPTWLNNAVRHHHHQNNDDDDDDEEEAPKNNKNNSASNDNGRAEDWETV 71
           L L T S +   PT  N  + H    +N           +  K+  A N+   A +WE  
Sbjct: 57  LHLQTNSGSSNSPTAANRYMPHSDESDNHKRGGGSRVNDRYGKDEDAGNNEYGAVNWENA 116

Query: 72  KCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDD 131
           +CKAE++ HPLYEQLLSAHVSCLRIATPVDQLP+IDAQL +S+ V+AKY AV  G  LDD
Sbjct: 117 RCKAEVLSHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLVQSQSVVAKYLAVGPGN-LDD 175

Query: 132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
           KELDQFMT+YVLLL SFKEQLQQHVRVHAMEAVMACW+LEQSLQ+LTG
Sbjct: 176 KELDQFMTNYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQSLQTLTG 223

Source: Kalanchoe x houghtonii

Species: Kalanchoe x houghtonii

Genus: Kalanchoe

Family: Crassulaceae

Order: Saxifragales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084578|emb|CBI25599.3| unnamed protein product [Vitis vinifera]

 Score =  192 bits (489), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 108/188 (57%), Positives = 122/188 (64%), Gaps = 33/188 (17%)

Query: 24  PTWLNNAVRHH----------HHQNNDDDDDDEEEA--------------PKNNKNNSAS 59
           PTWLNNA+             H Q N D       A               +N  NN   
Sbjct: 62  PTWLNNAILRQQSQYADGSFLHLQTNSDSTSSPATATTTTNQWLSRSMSNKRNGGNNQNR 121

Query: 60  NDNG--------RAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLS 111
            DN            +WE  + KA+I+ HPLYEQLLSAHVSCLRIATPVDQLP+IDAQL+
Sbjct: 122 GDNNGEDMLDCDSGGNWENARYKADILAHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLA 181

Query: 112 RSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLE 171
           +S+ V+ KYS +AN + LDDKELDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW+LE
Sbjct: 182 QSQGVVTKYSVLAN-QPLDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELE 240

Query: 172 QSLQSLTG 179
           QSLQSLTG
Sbjct: 241 QSLQSLTG 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282373|dbj|BAJ34052.1| unnamed protein product [Thellungiella halophila]

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 95/132 (71%), Positives = 111/132 (84%), Gaps = 6/132 (4%)

Query: 54  KNNSASNDNGRAED----WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQ 109
           K+  + ND G A +    W+  + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQ
Sbjct: 140 KSGDSKNDGGAAAEGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQ 199

Query: 110 LSRSRDVLAKYSAVANGR--VLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMAC 167
           L++S+ V+AKYSA+  G+  V DDKELDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMAC
Sbjct: 200 LAQSQHVVAKYSALGAGQGLVADDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMAC 259

Query: 168 WDLEQSLQSLTG 179
           W++EQSLQSLTG
Sbjct: 260 WEIEQSLQSLTG 271

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556581|ref|XP_003546603.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein knotted-1-like 3-like [Glycine max]

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 105/185 (56%), Positives = 128/185 (69%), Gaps = 18/185 (9%)

Query: 7   QNMQRLVLPTTSTNPPPPTWLNNAVRHHHHQNN-----------DDDDDDEEEAPKNNKN 55
           ++MQRL LP +      PTWLNN+      Q N              +DD      +  +
Sbjct: 26  RDMQRL-LPLSGG---APTWLNNSTAATLRQQNFLHLQPESAATTQQNDDVRGGGGSGMD 81

Query: 56  NSASNDNGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRD 115
            + +  N   +D    + KA+I+GHPLY+QLLSAHVSCLRIATPVDQLP+IDAQL +S+ 
Sbjct: 82  RNRTESNSEPDD--LAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQR 139

Query: 116 VLAKYSAVANGR-VLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSL 174
           V+ KYS + NG  V+DDKELDQFMTHYV+LL +FKEQLQQHVRVHAMEAVMACW+LEQSL
Sbjct: 140 VVDKYSGIGNGNGVVDDKELDQFMTHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSL 199

Query: 175 QSLTG 179
           QSLTG
Sbjct: 200 QSLTG 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|163838594|dbj|BAF95776.1| class 2 knotted1-like protein [Nicotiana tabacum]

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 91/113 (80%), Positives = 105/113 (92%), Gaps = 1/113 (0%)

Query: 68  WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGR 127
           WE  KCKA+I+ HPLY+QLLSAHVSCLRIATPVDQLP+IDAQL++S++V+AKYS +  G+
Sbjct: 125 WEREKCKADILNHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLAQSQNVVAKYSVLGQGQ 184

Query: 128 -VLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
            +LDDK+LDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW+LEQSLQSLTG
Sbjct: 185 PLLDDKDLDQFMTHYVLLLSSFKEQLQQHVRVHAMEAVMACWELEQSLQSLTG 237

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:2146945	431	KNAT3 "KNOTTED1-like homeobox	0.589	0.259	0.791	6.4e-44
TAIR|locus:2184911	393	KNAT4 "KNOTTED1-like homeobox	0.605	0.292	0.754	9.3e-43
TAIR|locus:2116632	383	KNAT5 "KNOTTED1-like homeobox	0.589	0.292	0.684	2.1e-38
TAIR|locus:2015554	291	KNAT7 "KNOTTED-like homeobox o	0.557	0.364	0.632	1.6e-31
TAIR|locus:2128828	398	KNAT1 "KNOTTED-like from Arabi	0.547	0.261	0.347	3.9e-08
UNIPROTKB|P46609	361	OSH1 "Homeobox protein knotted	0.478	0.252	0.33	6.5e-07
TAIR|locus:2027089	382	STM "SHOOT MERISTEMLESS" [Arab	0.521	0.259	0.285	2e-06
TAIR|locus:2026810	310	KNAT2 "KNOTTED-like from Arabi	0.578	0.354	0.296	0.0003

TAIR|locus:2146945 KNAT3 "KNOTTED1-like homeobox gene 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 91/115 (79%), Positives = 103/115 (89%)

Query:    68 WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAV---A 124
             W+  + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S+ V+AKYSA+   A
Sbjct:   154 WQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVAKYSALGAAA 213

Query:   125 NGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
              G V DDKELDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW++EQSLQSLTG
Sbjct:   214 QGLVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTG 268

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0009722 "detection of cytokinin stimulus" evidence=IEP

GO:0071345 "cellular response to cytokine stimulus" evidence=IDA

GO:0048513 "organ development" evidence=RCA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2184911 KNAT4 "KNOTTED1-like homeobox gene 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 89/118 (75%), Positives = 103/118 (87%)

Query:    65 AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAV- 123
             AE W+  + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S++V+AKYS + 
Sbjct:   115 AERWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTLE 174

Query:   124 -ANGRVL-DDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
              A G +  DDKELD FMTHYVLLL SFKEQLQQHVRVHAMEAVMACW++EQSLQS TG
Sbjct:   175 AAQGLLAGDDKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFTG 232

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA;NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0048513 "organ development" evidence=RCA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2116632 KNAT5 "KNOTTED1-like homeobox gene 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 78/114 (68%), Positives = 95/114 (83%)

Query:    66 EDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVAN 125
             EDW +   KA I+ HP+YEQLL+AHV+CLR+ATPVDQ+P+IDAQLS+   V AKYS +  
Sbjct:   111 EDWRSASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHTVAAKYSTL-- 168

Query:   126 GRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
             G V+D+KELD FM+HYV+LL SFKEQLQ HV VHAMEA+ ACW++EQSLQSLTG
Sbjct:   169 GVVVDNKELDHFMSHYVVLLCSFKEQLQHHVCVHAMEAITACWEIEQSLQSLTG 222

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009727 "detection of ethylene stimulus" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IDA

GO:0048513 "organ development" evidence=RCA

TAIR|locus:2015554 KNAT7 "KNOTTED-like homeobox of Arabidopsis thaliana 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 67/106 (63%), Positives = 84/106 (79%)

Query:    74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKE 133
             K EI  HP+YEQLL+AHV+CLR+ATP+DQLP I+AQLS+S  +L  Y++ A G   D  E
Sbjct:    30 KGEIATHPMYEQLLAAHVACLRVATPIDQLPIIEAQLSQSHHLLRSYASTAVGYHHDRHE 89

Query:   134 LDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
             LD F+  YV++L SFKEQLQQHVRVHA+EAVMAC ++E +L SLTG
Sbjct:    90 LDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTG 135

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010089 "xylem development" evidence=RCA;IMP

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048513 "organ development" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2128828 KNAT1 "KNOTTED-like from Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 40/115 (34%), Positives = 60/115 (52%)

Query:    74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDA--QLSRSRDVLAKYSAVANGRVLDD 131
             KA+I+ HP Y  LL A++ C +I  P D + +I A  Q   +R   +  S  A+ R   D
Sbjct:   135 KAKIIAHPHYSTLLQAYLDCQKIGAPPDVVDRITAARQDFEARQQRSTPSVSASSR---D 191

Query:   132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGNLFPQHI 186
              ELDQFM  Y  +L  ++E+L + ++  AME +     +E  L  L  +  P HI
Sbjct:   192 PELDQFMEAYCDMLVKYREELTRPIQ-EAMEFIRR---IESQLSMLCQS--PIHI 240

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045165 "cell fate commitment" evidence=IMP

GO:0010051 "xylem and phloem pattern formation" evidence=RCA;IMP

GO:0007389 "pattern specification process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048513 "organ development" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0001708 "cell fate specification" evidence=IMP

UNIPROTKB|P46609 OSH1 "Homeobox protein knotted-1-like 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 121 (47.7 bits), Expect = 6.5e-07, P = 6.5e-07
 Identities = 33/100 (33%), Positives = 58/100 (58%)

Query:    65 AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSR-SRDV-LAKYSA 122
             A D E +K K  I+ HP Y  LL+A++ C ++  P    P++ A+L+  ++D+ L + +A
Sbjct:    98 AADVEAIKAK--IISHPHYSSLLAAYLDCQKVGAP----PEVAARLTAVAQDLELRQRTA 151

Query:   123 VANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAME 162
             +       + ELDQFM  Y  +L  ++E+L + ++  AME
Sbjct:   152 LGVLGAATEPELDQFMEAYHEMLVKYREELTRPLQ-EAME 190

GO:0003677 "DNA binding" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IGI

TAIR|locus:2027089 STM "SHOOT MERISTEMLESS" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 30/105 (28%), Positives = 58/105 (55%)

Query:    74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKE 133
             KA+I+ HP Y +LL+A+V+C ++  P + + +++   S +    A  S    G + +D  
Sbjct:   122 KAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACSSAAAAAA--SMGPTGCLGEDPG 179

Query:   134 LDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLT 178
             LDQFM  Y  +L  ++++L +  +    EA++    +E   +SL+
Sbjct:   180 LDQFMEAYCEMLVKYEQELSKPFK----EAMVFLQRVECQFKSLS 220

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0019827 "stem cell maintenance" evidence=TAS

GO:0009934 "regulation of meristem structural organization" evidence=IMP

GO:0009691 "cytokinin biosynthetic process" evidence=TAS

GO:0048440 "carpel development" evidence=RCA;IMP

GO:0007389 "pattern specification process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0048513 "organ development" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2026810 KNAT2 "KNOTTED-like from Arabidopsis thaliana 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 0.00030, P = 0.00030
 Identities = 35/118 (29%), Positives = 55/118 (46%)

Query:    64 RAED-WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSA 122
             +AED +     K++I  HPLY +LL  ++ C ++  P++ +  I  ++ R   V  K   
Sbjct:    59 KAEDNFSLSVIKSKIASHPLYPRLLQTYIDCQKVGAPME-IACILEEIQRENHVY-KRDV 116

Query:   123 VANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSL-TG 179
                     D ELD+FM  Y  +L  +K  L +       EA      +E  LQ+L TG
Sbjct:   117 APLSCFGADPELDEFMETYCDILVKYKTDLARPFD----EATTFINKIEMQLQNLCTG 170


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.133   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      190       154   0.00088  105 3  11 22  0.43    31
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  162 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.24u 0.14s 15.38t   Elapsed:  00:00:01
  Total cpu time:  15.24u 0.14s 15.38t   Elapsed:  00:00:01
  Start:  Sat May 11 05:13:58 2013   End:  Sat May 11 05:13:59 2013

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010094 "specification of carpel identity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009723 "response to ethylene stimulus" evidence=IGI

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0J6N4	KNOSD_ORYSJ	No assigned EC number	0.8073	0.5684	0.2887	yes	no
Q0E3C3	KNOS2_ORYSJ	No assigned EC number	0.7009	0.5578	0.3386	yes	no
P48000	KNAT3_ARATH	No assigned EC number	0.7364	0.6315	0.2784	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
pfam03791	52	pfam03791, KNOX2, KNOX2 domain	2e-18
pfam03790	45	pfam03790, KNOX1, KNOX1 domain	3e-14

>gnl|CDD|112597 pfam03791, KNOX2, KNOX2 domain

 Score = 74.6 bits (184), Expect = 2e-18
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 126 GRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
             +  D ELDQFM  Y  +L  +KE+L +       EA+    ++E  LQ+L G
Sbjct: 3   RCIGADPELDQFMEAYCDVLVKYKEELSRPFD----EAMTFLNEIETQLQNLCG 52

The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerisation. Length = 52

>gnl|CDD|112596 pfam03790, KNOX1, KNOX1 domain

 Score = 63.8 bits (156), Expect = 3e-14
 Identities = 12/42 (28%), Positives = 25/42 (59%)

Query: 73  CKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSR 114
            KA+I  HPLY +LL+A++ C ++  P +   +++     ++
Sbjct: 3   IKAKIASHPLYPRLLAAYIDCQKVGAPPEVAARLEEIRRENQ 44

The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerisation. Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
PF03791	52	KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEIN	99.94
PF03790	45	KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEIN	99.89
KOG0773	342	consensus Transcription factor MEIS1 and related H	98.72

>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2

Probab=99.94  E-value=2.7e-27  Score=163.86  Aligned_cols=50  Identities=46%  Similarity=0.698  Sum_probs=47.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhcHHHHHHHHHHHHHHHHhhhc
Q 029626          126 GRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG  179 (190)
Q Consensus       126 ~~~~~DPELDqFMeaYc~mL~kYKEEL~rP~~~~a~EA~~F~~~IE~QL~sLtg  179 (190)
                      +++++|||||||||+||.||+||||||+|||+    ||++|||+||+||++|||
T Consensus         3 ~~~~~dpELDqFMeaYc~~L~kykeeL~~p~~----EA~~f~~~ie~qL~~Lt~   52 (52)
T PF03791_consen    3 SSIGADPELDQFMEAYCDMLVKYKEELQRPFQ----EAMEFCREIEQQLSSLTG   52 (52)
T ss_pred             CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhC
Confidence            46899999999999999999999999999994    999999999999999996

KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus

>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2

Probab=99.89  E-value=3.8e-24  Score=144.50  Aligned_cols=44  Identities=34%  Similarity=0.687  Sum_probs=41.3

Q ss_pred             HHHHHHHhcCCChHHHHHHHHhchhccCCCCchhhHHHHHhhhH
Q 029626           71 VKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSR  114 (190)
Q Consensus        71 e~iKAkI~sHPlYp~LL~AyidC~KVGAPpev~~rLda~l~~~q  114 (190)
                      +.|||+|++||+||+||+|||+|||||||||++++||+++++++
T Consensus         1 e~iKA~I~~HP~Y~~Ll~Ayi~C~KVGAP~e~~~~L~e~~~~~~   44 (45)
T PF03790_consen    1 EAIKAKIASHPLYPRLLAAYIDCQKVGAPPEVVARLDEILAESQ   44 (45)
T ss_pred             ChHHHHHHcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            47999999999999999999999999999999999999987654

KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus

>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]

Probab=98.72  E-value=3.8e-09  Score=93.01  Aligned_cols=116  Identities=19%  Similarity=0.182  Sum_probs=93.9

Q ss_pred             hhhhhHHHHHHHhcCCChHHHHHHHHhchhccCCCCchhhHHHHHhhhHHHHhhhhhccC-----CCCCCChhHHHHHHH
Q 029626           66 EDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVAN-----GRVLDDKELDQFMTH  140 (190)
Q Consensus        66 ~~~e~e~iKAkI~sHPlYp~LL~AyidC~KVGAPpev~~rLda~l~~~q~~~~k~s~~~~-----~~~~~DPELDqFMea  140 (190)
                      ..+....+|+.+.+||+|..++.||++|++++.|.+.+.++++.+.......+++...+.     ...+.+++++.||..
T Consensus        45 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~s~~~~~~~~~~~~~~~~~k  124 (342)
T KOG0773|consen   45 IMVSLASSKYLTAAQELLDEFCSAGLDCLKGKMPYDPVPRSPASLSPPEDKGARRGNATRESATLKAWLEEHRLNPYPSK  124 (342)
T ss_pred             cccccccccccccchhHHhHHhhccccccccccCcCccccccccccCccccccccccccccccccccchhhhhhccCchH
Confidence            456677899999999999999999999999999999999977765544322222221111     136789999999999


Q ss_pred             HHHHHHHHHHHHhhHhhhcHHHHHHHHHHHHHHHHhhhcCCCC
Q 029626          141 YVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGNLFP  183 (190)
Q Consensus       141 Yc~mL~kYKEEL~rP~~~~a~EA~~F~~~IE~QL~sLtg~sp~  183 (190)
                      |+.+|..+++.|+..+.  -++|+.++++|+..+...++..+.
T Consensus       125 ~~~~ll~~~~~~~~~~~--~~~~~~a~r~~~~~~~~~~~~~~~  165 (342)
T KOG0773|consen  125 LEKILLAVITKLTLTQV--STWFANARRRLKKELKMTWGPTPL  165 (342)
T ss_pred             HHHHHHHHHHHhhhhhH--HHHHHHHHHHHHhccCCCCCCccc
Confidence            99999999999999873  389999999999999999876543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00