Citrus Sinensis ID: 029635

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MKFANTLTASISAVRFPNIHHSIRFPLKHSPLCCWGRRTRMSRSPSNSTIRNFSSSISNEESLVSPKPKQQQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYKF
Secondary Structure (PSIPRED)
ccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHccccccccccEEEEEEEEccEEEEEEccccccccccHHHHHHHHHcccccccEEEEEccccccccEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcHHHHHHHHEcccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHcccccccHHEEEEEEEEEEccEEEEEEEEcccHHHcHHHHHHHHHHHcccHHHEEEEEEEcccccccEEEEEcccccccHHHHc
Coil and Loop (DISEMBL)
mkfantltasisavrfpnihhsirfplkhsplccwgrrtrmsrspsnstiRNFSSsisneeslvspkpkqqqqhpwlivglgnpgkqyngtrhnvgFEMVDAIAEAegisvssvnfkahfgkgfignvpvmlakpqtfmnasgqsvGSIVSYYKIPLKQVLVIfddldlpfskmrllpkgghgghngykf
Flexible Loop (DISEMBL)
MKFANTltasisavrfpnihhsirfplkhsplccwgrrtrmsrspsnstIRNFSSSISNEESLVSPKPKQQQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMrllpkgghgghngykf
Low Complexity Region (SEG)
MKFANTLTASISAVRFPNIHHSIRFPLKHSPLCCWGRRTRMSRSPSNSTIRNFsssisneeslvsPKPKQQQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYKF
Disordered region (IsUnstruct)
******LTASISAVRFPNIHHSIRFPLKHSPLCCWGR*************************************PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLL*************
Disordered Region (DISOPRED)
********ASISAVRFPNIHHSIRFPLKHSPLCC*****************************************WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHG*HNGY**
Disordered Region (DISEMBL)
MKFANTLTASISAVRFPNIHHSIRFPLKHSPLCCWGRRTRM********************************HPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYKF
Disordered Region (DISPRO)
*K***TLTASISAVRFPNIHHSIRFPLKHSPLCCWGRRTRM******************************QQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGG*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKFANTLTASISAVRFPNIHHSIRFPLKHSPLCCWGRRTRMSRSPSNSTIRNFSSSISNEESLVSPKPKQQQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
Q8GW64	288	Peptidyl-tRNA hydrolase,	yes	no	0.678	0.447	0.769	7e-55
Q5N9Q7	250	Peptidyl-tRNA hydrolase,	yes	no	0.605	0.46	0.782	2e-50
Q6NLS8	219	Peptidyl-tRNA hydrolase,	no	no	0.605	0.525	0.6	3e-38
Q10LI6	186	CRS2-like protein, chloro	no	no	0.6	0.612	0.614	4e-38
Q5ZCL8	259	Chloroplastic group IIB i	no	no	0.836	0.613	0.45	5e-37
Q9LF14	240	Chloroplastic group IIB i	no	no	0.605	0.479	0.582	1e-36
Q9M5P4	256	Chloroplastic group IIB i	N/A	no	0.673	0.5	0.515	2e-35
Q9FKN4	246	Chloroplastic group IIB i	no	no	0.605	0.467	0.573	8e-35
B1YGP7	185	Peptidyl-tRNA hydrolase O	yes	no	0.589	0.605	0.553	9e-31
Q8R757	185	Peptidyl-tRNA hydrolase O	yes	no	0.589	0.605	0.526	8e-30

>sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2

 Score =  213 bits (542), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 116/130 (89%), Gaps = 1/130 (0%)

Query: 61  ESLVSPKPKQQQ-QHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAH 119
           ++L S KPK    Q PWLIVGLGNPGK+Y GTRHNVGFEMVDA+A+AEGIS+++VNFKA 
Sbjct: 79  QALPSSKPKSPPLQLPWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKAL 138

Query: 120 FGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPK 179
           FGKG IGN+P+MLAKPQTFMN SG+SVG IVS+YKIPLKQVLV++DDLDLPF K+RLLPK
Sbjct: 139 FGKGVIGNIPIMLAKPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPK 198

Query: 180 GGHGGHNGYK 189
           GGHGGHNG +
Sbjct: 199 GGHGGHNGMR 208

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|Q5N9Q7|PTHM_ORYSJ Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1

 Score =  198 bits (504), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 103/115 (89%)

Query: 75  PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
           PWL VGLGNPGK Y GTRHNVGFEM+D IAEAEGIS+SS+ FKA  GKG IG+ P+MLAK
Sbjct: 55  PWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAK 114

Query: 135 PQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
           PQTFMNASG+SVG +VSY+KIPL QVLV++DDLDLPF+K+RLLPKGGHGGHNG +
Sbjct: 115 PQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVR 169

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q6NLS8|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1

 Score =  157 bits (398), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 69/115 (60%), Positives = 90/115 (78%)

Query: 75  PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
           PWL +GLGNPG +Y GTRHN+GFEM+D  AE+ GI ++ VNFKA  G+GF+ ++PV+LAK
Sbjct: 18  PWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVILAK 77

Query: 135 PQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
           PQT+MN SG+S G + +YYK+PL +VLV+ DD+ LP   +RL  KGGHG HNG K
Sbjct: 78  PQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLK 132

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. May also be required for the splicing of group IIB introns in mitochondrions.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q10LI6|CRS2L_ORYSJ CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800 PE=2 SV=1

 Score =  157 bits (397), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 92/114 (80%)

Query: 74  HPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLA 133
           +PWL VGLGNPG++Y  TRHNVGF+M+D  A+++GIS++   FKA FG+G +  VPV+LA
Sbjct: 59  NPWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVLLA 118

Query: 134 KPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNG 187
           KPQT+MN SG+SVG + +YYK+PL +VLV FDD+DLP   +RL PKGG+G HNG
Sbjct: 119 KPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNG 172

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1

 Score =  154 bits (388), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/160 (45%), Positives = 106/160 (66%), Gaps = 1/160 (0%)

Query: 30  SPLCCWGRRTRMSRSPSNSTIRNFSSSISNEESLVSPKPKQQQQHPWLIVGLGNPGKQYN 89
           SP  C  RR  +S + +          I+   S+  P  +  +  PWLI GLGNPG +Y+
Sbjct: 20  SPEPCRRRRLLLS-AAAPLRRTRLRRRIAVVASVPDPAARPAEYTPWLIAGLGNPGSKYH 78

Query: 90  GTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSI 149
           GTRHNVGFEMVD IA  EGI+++++  K+  G G IG VPV+L KPQ+++N SG+++G +
Sbjct: 79  GTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPL 138

Query: 150 VSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
            +YY++PL+ +LV++D++ LP   +RL  KGGHG HNG +
Sbjct: 139 AAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQ 178

Required for the splicing of group IIB introns in chloroplasts.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1

 Score =  152 bits (384), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 67/115 (58%), Positives = 92/115 (80%)

Query: 75  PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
           PWLIVGLGNPG +Y+GTRHNVGFEM+D +A  EG+ ++++  KA  G G I +VP++LAK
Sbjct: 45  PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAK 104

Query: 135 PQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
           PQT+MN SG+SVGS+ S+Y++PL+ +L+I+D++ LP   +RL PKGG G HNG K
Sbjct: 105 PQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVK 159

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M5P4|CRS2_MAIZE Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/128 (51%), Positives = 92/128 (71%)

Query: 62  SLVSPKPKQQQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFG 121
           S+  P     +  PWLI GLGNPG +Y GTRHNVGFEMVD IA  EGI+++++  K+  G
Sbjct: 48  SVPDPAAGPVEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLG 107

Query: 122 KGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGG 181
            G IG VPV++ KPQ++MN SG+++G + +YY++PL+ +L+I+DD  LP   +RL  KGG
Sbjct: 108 IGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGG 167

Query: 182 HGGHNGYK 189
           HG HNG +
Sbjct: 168 HGRHNGLQ 175

Required for the splicing of group IIB introns in chloroplasts. Forms complexes with either CAF1 or CAF2 which, in turn, interact with RNA and confer intron specificity of the splicing particles. Has no peptidyl-tRNA hydrolase activity.

Zea mays (taxid: 4577)

>sp|Q9FKN4|CRS2A_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1

 Score =  146 bits (369), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 66/115 (57%), Positives = 87/115 (75%)

Query: 75  PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
           PWLIVGLGNPG +Y GTRHN+GFEM+D IA A  IS++++  KA  G G +G VP++L K
Sbjct: 51  PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVK 110

Query: 135 PQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
           PQ +MN SG+SVG + +YY+IPL+ +L+I+DD+ L    +RL PKGGH  HNG K
Sbjct: 111 PQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLK 165

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|B1YGP7|PTH_EXIS2 Peptidyl-tRNA hydrolase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=pth PE=3 SV=1

 Score =  133 bits (334), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 62/112 (55%), Positives = 79/112 (70%)

Query: 78  IVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQT 137
           IVGLGNPG +Y  TRHN+GF  +DA+A+  GI ++   FKA FG G I    V+L KP T
Sbjct: 4   IVGLGNPGAKYTNTRHNIGFLAIDALAKEHGIKLTESKFKAVFGTGMIKGERVVLVKPLT 63

Query: 138 FMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
           +MN SG++V  ++ +YKI ++ VLVI+DDLDLP  KMRL  KG  GGHNG K
Sbjct: 64  YMNLSGEAVRPLLDFYKIAVEDVLVIYDDLDLPLEKMRLRSKGSAGGHNGVK 115

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) (taxid: 262543)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q8R757|PTH_THETN Peptidyl-tRNA hydrolase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=pth PE=3 SV=1

 Score =  129 bits (325), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 82/112 (73%)

Query: 76  WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKP 135
           ++I GLGNPGK+Y GTRHNVGF ++DA+++  GI VS + FK+  G+G      V+L KP
Sbjct: 2   YIIAGLGNPGKEYEGTRHNVGFMVIDALSKKLGIEVSRLKFKSLMGEGHFKGEKVILLKP 61

Query: 136 QTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNG 187
           QTFMN SG+++   V++YKIPL+ V+V++DD DL   K+R+  KG  GGHNG
Sbjct: 62  QTFMNLSGEALYDAVNFYKIPLENVIVVYDDKDLEVGKIRIRRKGSSGGHNG 113

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
297734182	307	unnamed protein product [Vitis vinifera]	0.842	0.521	0.657	1e-58
225455878	205	PREDICTED: peptidyl-tRNA hydrolase, chlo	0.636	0.590	0.848	5e-56
224118918	271	predicted protein [Populus trichocarpa]	0.684	0.479	0.780	1e-55
357521083	258	Peptidyl-tRNA hydrolase [Medicago trunca	0.647	0.476	0.848	3e-55
388522905	258	unknown [Medicago truncatula]	0.647	0.476	0.832	6e-54
30685853	288	Peptidyl-tRNA hydrolase [Arabidopsis tha	0.678	0.447	0.769	3e-53
356513117	259	PREDICTED: peptidyl-tRNA hydrolase, chlo	0.647	0.474	0.788	7e-53
26453108	288	unknown protein [Arabidopsis thaliana] g	0.678	0.447	0.761	9e-53
449486844	273	PREDICTED: peptidyl-tRNA hydrolase, chlo	0.6	0.417	0.850	1e-52
449439389	274	PREDICTED: peptidyl-tRNA hydrolase, chlo	0.6	0.416	0.850	1e-52

>gi|297734182|emb|CBI15429.3| unnamed protein product [Vitis vinifera]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 121/184 (65%), Positives = 141/184 (76%), Gaps = 24/184 (13%)

Query: 6   TLTASISAVRFPNIHHSIRFPLKHSPLCCWGRRTRMSRSPSNSTIRNFSSSISNEESLVS 65
           +L++SI+A+RFPN   S+ F                    S+ T+  FSS  +      S
Sbjct: 67  SLSSSIAALRFPNWPRSLSF--------------------SSRTLIPFSSLSTPTPMDSS 106

Query: 66  PKPKQQQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFI 125
           P+P +    PWL+VGLGNPGK+YNGTRHNVGFEMVDAIAEAEGIS+SSV+FK+ FGKGFI
Sbjct: 107 PRPVK----PWLLVGLGNPGKKYNGTRHNVGFEMVDAIAEAEGISISSVSFKSLFGKGFI 162

Query: 126 GNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGH 185
           GNVPVMLAKPQTFMN SG+SVG+IVSYYKIPLKQVLVIFDDLDLPFSK+RLLPKGGHGGH
Sbjct: 163 GNVPVMLAKPQTFMNVSGESVGAIVSYYKIPLKQVLVIFDDLDLPFSKLRLLPKGGHGGH 222

Query: 186 NGYK 189
           NG +
Sbjct: 223 NGMR 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455878|ref|XP_002275254.1| PREDICTED: peptidyl-tRNA hydrolase, chloroplastic-like [Vitis vinifera]

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/125 (84%), Positives = 117/125 (93%), Gaps = 4/125 (3%)

Query: 65  SPKPKQQQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGF 124
           SP+P +    PWL+VGLGNPGK+YNGTRHNVGFEMVDAIAEAEGIS+SSV+FK+ FGKGF
Sbjct: 4   SPRPVK----PWLLVGLGNPGKKYNGTRHNVGFEMVDAIAEAEGISISSVSFKSLFGKGF 59

Query: 125 IGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGG 184
           IGNVPVMLAKPQTFMN SG+SVG+IVSYYKIPLKQVLVIFDDLDLPFSK+RLLPKGGHGG
Sbjct: 60  IGNVPVMLAKPQTFMNVSGESVGAIVSYYKIPLKQVLVIFDDLDLPFSKLRLLPKGGHGG 119

Query: 185 HNGYK 189
           HNG +
Sbjct: 120 HNGMR 124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118918|ref|XP_002317938.1| predicted protein [Populus trichocarpa] gi|222858611|gb|EEE96158.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/132 (78%), Positives = 121/132 (91%), Gaps = 2/132 (1%)

Query: 58  SNEESLVSPKPKQQQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFK 117
            + +++ + KPKQQ  HPWLIVGLGNPGK+Y+ TRHNVGF+MVDA+A+AEGIS+S V+FK
Sbjct: 62  DSSDAVAAAKPKQQ--HPWLIVGLGNPGKKYHSTRHNVGFQMVDALADAEGISISGVSFK 119

Query: 118 AHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLL 177
           A FGKGFIGNVPVM AKPQTFMNASG+SVG+IVSYYKIPLKQVL+I+DDLDLPF+K+RLL
Sbjct: 120 ALFGKGFIGNVPVMFAKPQTFMNASGESVGAIVSYYKIPLKQVLLIYDDLDLPFAKLRLL 179

Query: 178 PKGGHGGHNGYK 189
           PKGGHGGHNG K
Sbjct: 180 PKGGHGGHNGMK 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521083|ref|XP_003630830.1| Peptidyl-tRNA hydrolase [Medicago truncatula] gi|355524852|gb|AET05306.1| Peptidyl-tRNA hydrolase [Medicago truncatula]

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 106/125 (84%), Positives = 118/125 (94%), Gaps = 2/125 (1%)

Query: 65  SPKPKQQQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGF 124
           S KPKQ +  PWLIVGLGNPGK++NGTRHNVGFEMVDAIAEAEGIS+SSV+FKA FGKG+
Sbjct: 56  STKPKQNE--PWLIVGLGNPGKKFNGTRHNVGFEMVDAIAEAEGISMSSVSFKALFGKGY 113

Query: 125 IGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGG 184
           IG+VPV+LAKPQTFMN SG+SVG+IVSYYKIPLKQVLVIFDDLDLPF+K+RLLPKGGHGG
Sbjct: 114 IGDVPVILAKPQTFMNLSGESVGAIVSYYKIPLKQVLVIFDDLDLPFAKLRLLPKGGHGG 173

Query: 185 HNGYK 189
           HNG K
Sbjct: 174 HNGMK 178

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522905|gb|AFK49514.1| unknown [Medicago truncatula]

 Score =  215 bits (548), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 104/125 (83%), Positives = 116/125 (92%), Gaps = 2/125 (1%)

Query: 65  SPKPKQQQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGF 124
           S KPKQ +  PWLIVGLGNPGK++NGTRHNVGFEMVD IAEAEGIS+SSV+FKA FGKG+
Sbjct: 56  STKPKQNE--PWLIVGLGNPGKKFNGTRHNVGFEMVDTIAEAEGISMSSVSFKALFGKGY 113

Query: 125 IGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGG 184
           IG+VPV+LAKPQTFMN SG+SVG+IVSYYKIPLKQVLVIFD LDLPF+K+RLLPKGGHGG
Sbjct: 114 IGDVPVILAKPQTFMNLSGESVGAIVSYYKIPLKQVLVIFDGLDLPFAKLRLLPKGGHGG 173

Query: 185 HNGYK 189
           HNG K
Sbjct: 174 HNGMK 178

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685853|ref|NP_173279.2| Peptidyl-tRNA hydrolase [Arabidopsis thaliana] gi|134035412|sp|Q8GW64.2|PTHC_ARATH RecName: Full=Peptidyl-tRNA hydrolase, chloroplastic; AltName: Full=C-PTH; Flags: Precursor gi|332191593|gb|AEE29714.1| Peptidyl-tRNA hydrolase [Arabidopsis thaliana]

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 116/130 (89%), Gaps = 1/130 (0%)

Query: 61  ESLVSPKPKQQQ-QHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAH 119
           ++L S KPK    Q PWLIVGLGNPGK+Y GTRHNVGFEMVDA+A+AEGIS+++VNFKA 
Sbjct: 79  QALPSSKPKSPPLQLPWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKAL 138

Query: 120 FGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPK 179
           FGKG IGN+P+MLAKPQTFMN SG+SVG IVS+YKIPLKQVLV++DDLDLPF K+RLLPK
Sbjct: 139 FGKGVIGNIPIMLAKPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPK 198

Query: 180 GGHGGHNGYK 189
           GGHGGHNG +
Sbjct: 199 GGHGGHNGMR 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513117|ref|XP_003525260.1| PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Glycine max]

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 97/123 (78%), Positives = 114/123 (92%)

Query: 67  KPKQQQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIG 126
           K  +++  PWLIVGLGNPGK+Y  TRHNVGFEMVD IAEAEGIS+++V+FK+ FGKGFIG
Sbjct: 57  KEMKKEASPWLIVGLGNPGKKYAATRHNVGFEMVDTIAEAEGISMTTVSFKSLFGKGFIG 116

Query: 127 NVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHN 186
           +VPV+LAKPQT+MN+SG+SVG+IVSYYKIPLKQVLVIFDDLDLPF+K+RLLPKGGHGGHN
Sbjct: 117 DVPVILAKPQTYMNSSGESVGAIVSYYKIPLKQVLVIFDDLDLPFAKLRLLPKGGHGGHN 176

Query: 187 GYK 189
           G K
Sbjct: 177 GMK 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26453108|dbj|BAC43630.1| unknown protein [Arabidopsis thaliana] gi|28950849|gb|AAO63348.1| At1g18440 [Arabidopsis thaliana]

 Score =  211 bits (538), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 99/130 (76%), Positives = 116/130 (89%), Gaps = 1/130 (0%)

Query: 61  ESLVSPKPKQQQ-QHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAH 119
           ++L S KPK    Q PWLIVGLGNPGK+Y GTRHNVGFEMVDA+A+AEGIS+++VNFKA 
Sbjct: 79  QALPSSKPKSPPLQLPWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKAL 138

Query: 120 FGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPK 179
           FGKG IGN+P+MLAKPQTFM+ SG+SVG IVS+YKIPLKQVLV++DDLDLPF K+RLLPK
Sbjct: 139 FGKGVIGNIPIMLAKPQTFMDLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPK 198

Query: 180 GGHGGHNGYK 189
           GGHGGHNG +
Sbjct: 199 GGHGGHNGMR 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449486844|ref|XP_004157420.1| PREDICTED: peptidyl-tRNA hydrolase, chloroplastic-like [Cucumis sativus]

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 97/114 (85%), Positives = 110/114 (96%)

Query: 76  WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKP 135
           WLIVGLGNPGK+Y+ TRHNVGFEMVDA+AEAEGIS+S+V+FKA  GKGFIG+VPVMLAKP
Sbjct: 80  WLIVGLGNPGKKYDRTRHNVGFEMVDAVAEAEGISISNVSFKALIGKGFIGDVPVMLAKP 139

Query: 136 QTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
           QTFMNASG+SVG+IVSYYKIPLKQVLVIFDDLDLPF+K+R+LPKGGHGGHNG +
Sbjct: 140 QTFMNASGESVGAIVSYYKIPLKQVLVIFDDLDLPFAKLRMLPKGGHGGHNGMR 193

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439389|ref|XP_004137468.1| PREDICTED: peptidyl-tRNA hydrolase, chloroplastic-like [Cucumis sativus]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 97/114 (85%), Positives = 110/114 (96%)

Query: 76  WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKP 135
           WLIVGLGNPGK+Y+ TRHNVGFEMVDA+AEAEGIS+S+V+FKA  GKGFIG+VPVMLAKP
Sbjct: 81  WLIVGLGNPGKKYDRTRHNVGFEMVDAVAEAEGISISNVSFKALIGKGFIGDVPVMLAKP 140

Query: 136 QTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
           QTFMNASG+SVG+IVSYYKIPLKQVLVIFDDLDLPF+K+R+LPKGGHGGHNG +
Sbjct: 141 QTFMNASGESVGAIVSYYKIPLKQVLVIFDDLDLPFAKLRMLPKGGHGGHNGMR 194

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:2014134	288	AT1G18440 [Arabidopsis thalian	0.647	0.427	0.790	1.9e-51
TAIR|locus:2183234	219	AT5G19830 [Arabidopsis thalian	0.605	0.525	0.6	4.9e-37
TAIR|locus:2181412	240	AT5G16140 [Arabidopsis thalian	0.605	0.479	0.582	9.2e-36
TAIR|locus:2173298	250	AT5G38290 [Arabidopsis thalian	0.815	0.62	0.468	3.6e-34
TIGR_CMR|BA_0050	186	BA_0050 "peptidyl-tRNA hydrola	0.594	0.607	0.504	3.1e-28
TIGR_CMR|CHY_0196	187	CHY_0196 "peptidyl-tRNA hydrol	0.589	0.598	0.517	3.9e-28
TIGR_CMR|GSU_0663	193	GSU_0663 "peptidyl-tRNA hydrol	0.594	0.585	0.495	1.5e-26
TIGR_CMR|SPO_0811	239	SPO_0811 "peptidyl-tRNA hydrol	0.594	0.472	0.460	6.8e-24
TIGR_CMR|DET_0595	189	DET_0595 "peptidyl-tRNA hydrol	0.584	0.587	0.450	1.6e-22
TIGR_CMR|CBU_1841	187	CBU_1841 "peptidyl-tRNA hydrol	0.573	0.582	0.456	3e-21

TAIR|locus:2014134 AT1G18440 [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 98/124 (79%), Positives = 112/124 (90%)

Query:    67 KPKQQQ-QHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFI 125
             KPK    Q PWLIVGLGNPGK+Y GTRHNVGFEMVDA+A+AEGIS+++VNFKA FGKG I
Sbjct:    85 KPKSPPLQLPWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVI 144

Query:   126 GNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGH 185
             GN+P+MLAKPQTFMN SG+SVG IVS+YKIPLKQVLV++DDLDLPF K+RLLPKGGHGGH
Sbjct:   145 GNIPIMLAKPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGH 204

Query:   186 NGYK 189
             NG +
Sbjct:   205 NGMR 208

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2183234 AT5G19830 [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 69/115 (60%), Positives = 90/115 (78%)

Query:    75 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
             PWL +GLGNPG +Y GTRHN+GFEM+D  AE+ GI ++ VNFKA  G+GF+ ++PV+LAK
Sbjct:    18 PWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVILAK 77

Query:   135 PQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
             PQT+MN SG+S G + +YYK+PL +VLV+ DD+ LP   +RL  KGGHG HNG K
Sbjct:    78 PQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLK 132

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006412 "translation" evidence=ISS

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2181412 AT5G16140 [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 67/115 (58%), Positives = 92/115 (80%)

Query:    75 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
             PWLIVGLGNPG +Y+GTRHNVGFEM+D +A  EG+ ++++  KA  G G I +VP++LAK
Sbjct:    45 PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAK 104

Query:   135 PQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
             PQT+MN SG+SVGS+ S+Y++PL+ +L+I+D++ LP   +RL PKGG G HNG K
Sbjct:   105 PQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVK 159

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2173298 AT5G38290 [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 75/160 (46%), Positives = 104/160 (65%)

Query:    30 SPLCCWGRRTRMSRSPSNSTIRNFXXXXXXXXXXXXPKPKQQQQHPWLIVGLGNPGKQYN 89
             SPL  + +  + S++ SNS  + F             K  + +  PWLIVGLGNPG +Y 
Sbjct:    15 SPL--YPKAYKFSQTKSNS--KRFSSLRASLPVSDN-KLLKFEYTPWLIVGLGNPGLKYY 69

Query:    90 GTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSI 149
             GTRHN+GFEM+D IA A  IS++++  KA  G G +G VP++L KPQ +MN SG+SVG +
Sbjct:    70 GTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGESVGPL 129

Query:   150 VSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
              +YY+IPL+ +L+I+DD+ L    +RL PKGGH  HNG K
Sbjct:   130 AAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLK 169

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

TIGR_CMR|BA_0050 BA_0050 "peptidyl-tRNA hydrolase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 57/113 (50%), Positives = 79/113 (69%)

Query:    77 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQ 136
             LIVGLGNPG++Y  TRHN+GF  +D +A+   IS++   FK  FG GF+    V+L KP 
Sbjct:     3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPL 62

Query:   137 TFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
             T+MN SG+S+  ++ YYKI ++  +V++DDLD+P  K+RL  KG  GGHNG K
Sbjct:    63 TYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVK 115

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CHY_0196 CHY_0196 "peptidyl-tRNA hydrolase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 58/112 (51%), Positives = 80/112 (71%)

Query:    76 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKP 135
             ++I GLGNPG++Y  TRHN GF +VD +A+  GI ++   FK+  G+G I  V V+L KP
Sbjct:     2 FIIAGLGNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLKP 61

Query:   136 QTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNG 187
             QT+MN SG +V   VS+YK+PL +++V++DDLDLP  K+RL  KG  GGH G
Sbjct:    62 QTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRG 113

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|GSU_0663 GSU_0663 "peptidyl-tRNA hydrolase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 56/113 (49%), Positives = 78/113 (69%)

Query:    77 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQ 136
             LIVGLGNPG +Y  TRHN GF ++D +A A G SV+  +F   FG+G      ++L KPQ
Sbjct:     5 LIVGLGNPGPKYLWTRHNAGFMVLDRLAHAIGASVTRKSFSGVFGEGAWHGERLLLLKPQ 64

Query:   137 TFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
             T+MN SG+SV   + ++K+PL   +VI DDLD+PF ++++   GGHGGHNG +
Sbjct:    65 TYMNLSGRSVAEALRFHKLPLCDTIVIHDDLDIPFGRVKVKEGGGHGGHNGLR 117

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|SPO_0811 SPO_0811 "peptidyl-tRNA hydrolase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 52/113 (46%), Positives = 70/113 (61%)

Query:    77 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQ 136
             L VGLGNPG +Y   RHN+GF  +D IAE  G     V F+    +G +G   V+L KP+
Sbjct:     3 LFVGLGNPGAKYARNRHNIGFMALDRIAEDHGFGPWRVKFQGQIAEGRLGREKVLLLKPE 62

Query:   137 TFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
             TFMN SGQSVG  + +YK+    + V+ D+LDL   K+++   GGH GHNG +
Sbjct:    63 TFMNRSGQSVGEAMRFYKLDSTDITVLHDELDLAPGKVKVKAGGGHAGHNGLR 115

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|DET_0595 DET_0595 "peptidyl-tRNA hydrolase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 50/111 (45%), Positives = 70/111 (63%)

Query:    77 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQ 136
             LI+GLGNPGK+Y+G RHNVGF+ +   A+   IS       +  G G I +  ++LAKPQ
Sbjct:     3 LIIGLGNPGKEYSGNRHNVGFQCLSRFAKDNHISFDKKCCLSRTGSGRINDEEIVLAKPQ 62

Query:   137 TFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNG 187
             T+MN SG++   ++  Y +    ++V+ DDLDLP  K+RL   G  GGHNG
Sbjct:    63 TYMNLSGKAASQLLRRYNLKAADIIVVQDDLDLPAGKIRLRLGGSAGGHNG 113

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CBU_1841 CBU_1841 "peptidyl-tRNA hydrolase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 52/114 (45%), Positives = 69/114 (60%)

Query:    77 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNV-PVMLAKP 135
             LI GLGNPG QY  TRHNVG   ++ +A+    S++  N K H   GF+       L KP
Sbjct:     7 LIAGLGNPGDQYARTRHNVGAWFLETLAQQRNQSLAKEN-KFH---GFVAKCNDYWLLKP 62

Query:   136 QTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
              TFMN SGQ+V ++  +YKI   ++L+  D+LD P   +RL   GGHGGHNG +
Sbjct:    63 TTFMNESGQAVAALAHFYKIKPSEILIAHDELDFPAGDIRLKEGGGHGGHNGLR 116

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GW64	PTHC_ARATH	3, ., 1, ., 1, ., 2, 9	0.7692	0.6789	0.4479	yes	no
Q5N9Q7	PTHM_ORYSJ	3, ., 1, ., 1, ., 2, 9	0.7826	0.6052	0.46	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1.29	0.914
3rd Layer	3.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
cd02406	191	cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) i	1e-72
cd00462	171	cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a m	7e-62
PRK05426	189	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provi	3e-60
pfam01195	183	pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolas	5e-57
COG0193	190	COG0193, Pth, Peptidyl-tRNA hydrolase [Translation	1e-53
TIGR00447	188	TIGR00447, pth, peptidyl-tRNA hydrolase	1e-41

>gnl|CDD|239090 cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

 Score =  217 bits (554), Expect = 1e-72
 Identities = 75/115 (65%), Positives = 95/115 (82%)

Query: 75  PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
           PWLI GLGNPG +Y GTRHNVGFEMVD IAEAEGI+++++ FK+  G G IG+VPV+LAK
Sbjct: 2   PWLIAGLGNPGNKYKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLAK 61

Query: 135 PQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
           PQT+MN SG+SVG + +YYK+PL+ +LVI+DD+ LP   +RL PKGGHG HNG +
Sbjct: 62  PQTYMNYSGESVGPLAAYYKVPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQ 116

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH). Length = 191

>gnl|CDD|238259 cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

 Score =  189 bits (482), Expect = 7e-62
 Identities = 63/113 (55%), Positives = 80/113 (70%)

Query: 77  LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQ 136
           LIVGLGNPG +Y  TRHNVGF ++DA+AE  G+S      K   G+G IG   V+L KPQ
Sbjct: 1   LIVGLGNPGPKYENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQ 60

Query: 137 TFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
           T+MN SG++V ++ ++YKIP + +LVI DDLDLP  K+RL   GG GGHNG K
Sbjct: 61  TYMNLSGEAVAALANFYKIPPEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLK 113

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts. Length = 171

>gnl|CDD|235457 PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional

 Score =  185 bits (473), Expect = 3e-60
 Identities = 59/114 (51%), Positives = 76/114 (66%), Gaps = 1/114 (0%)

Query: 75  PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLA 133
             LIVGLGNPG +Y  TRHN+GF +VD +A   G S+     FK    +G I    V+L 
Sbjct: 2   MKLIVGLGNPGPEYANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILL 61

Query: 134 KPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNG 187
           KPQT+MN SG++V ++ ++YKIP + +LVI DDLDLP  K+RL   GG GGHNG
Sbjct: 62  KPQTYMNLSGKAVAALANFYKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNG 115

Length = 189

>gnl|CDD|216355 pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolase

 Score =  177 bits (451), Expect = 5e-57
 Identities = 62/114 (54%), Positives = 78/114 (68%), Gaps = 1/114 (0%)

Query: 77  LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVS-SVNFKAHFGKGFIGNVPVMLAKP 135
           LIVGLGNPG +Y  TRHNVGF ++D +AE  G+S+     FK    KG I    V+L KP
Sbjct: 1   LIVGLGNPGPKYENTRHNVGFMVIDRLAERLGVSLKKKKKFKGLIAKGRIEGEKVILLKP 60

Query: 136 QTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
           QT+MN SG++V +I  +YKIP + +LV+ DDLDLP  K+RL   GG GGHNG K
Sbjct: 61  QTYMNLSGEAVRAIARFYKIPPEDILVVHDDLDLPLGKLRLKKGGGAGGHNGLK 114

Length = 183

>gnl|CDD|223271 COG0193, Pth, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

 Score =  168 bits (429), Expect = 1e-53
 Identities = 59/116 (50%), Positives = 75/116 (64%), Gaps = 1/116 (0%)

Query: 75  PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVS-SVNFKAHFGKGFIGNVPVMLA 133
             LIVGLGNPGK+Y  TRHNVGF +VD +A    +S      F     KG I    V+L 
Sbjct: 2   MKLIVGLGNPGKKYAKTRHNVGFMVVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVILL 61

Query: 134 KPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
           KP T+MN SG++VG++ S+YKI  + +LV+ D+LDLP  K+RL   GG GGHNG K
Sbjct: 62  KPTTYMNLSGKAVGALASFYKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLK 117

Length = 190

>gnl|CDD|213531 TIGR00447, pth, peptidyl-tRNA hydrolase

 Score =  138 bits (349), Expect = 1e-41
 Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)

Query: 77  LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKP 135
           LIVGLGNPGK+Y GTRHN GF ++D +A   G+S+ +   F  +  +G +    V+L KP
Sbjct: 3   LIVGLGNPGKKYAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKP 62

Query: 136 QTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
            T+MN SG++V ++ S+Y+I   ++LV+ D+LDLP  K+RL   GG GGHNG K
Sbjct: 63  LTYMNLSGEAVRALASFYRIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLK 116

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function [Protein synthesis, Other]. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
COG0193	190	Pth Peptidyl-tRNA hydrolase [Translation, ribosoma	100.0
cd02406	191	CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclea	100.0
cd00462	171	PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric p	100.0
TIGR00447	188	pth peptidyl-tRNA hydrolase. The natural substrate	100.0
PRK05426	189	peptidyl-tRNA hydrolase; Provisional	100.0
PF01195	184	Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro	100.0
KOG2255	224	consensus Peptidyl-tRNA hydrolase [Translation, ri	100.0

>COG0193 Pth Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.7e-51  Score=342.31  Aligned_cols=116  Identities=51%  Similarity=0.838  Sum_probs=111.4

Q ss_pred             CCeeEEEecCcccCCCcCcchHHHHHHHHHHHHhCCCC-CccceeeEEEEEEECCeEEEEEeCCchhhhchHHHHHHHHH
Q 029635           74 HPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSY  152 (190)
Q Consensus        74 ~~~LIVGLGNPG~kY~~TRHNvGf~vlD~La~~~~~~~-~~~~~~~~~~~~~i~~~~v~L~KP~TyMNlSG~aV~~i~~~  152 (190)
                      .++|||||||||++|+.||||||||++|.||++++.++ ..+++.+.++++.+.+++|+|+||+||||+||++|.++++|
T Consensus         1 ~~kLIVGLGNPG~~Y~~TRHNvGf~~vD~La~~~~~~~~~~~kf~~~~~~~~i~g~kv~l~kP~TyMNlSG~~V~~~~~f   80 (190)
T COG0193           1 MMKLIVGLGNPGKKYAKTRHNVGFMVVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVILLKPTTYMNLSGKAVGALASF   80 (190)
T ss_pred             CcEEEEECCCCchhhcccchhHHHHHHHHHHHHhCCCCccccccCceeEEEEeCCcEEEEecCccceeCcHHHHHHHHHH
Confidence            36899999999999999999999999999999999988 45688899999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeccCCCCcceEEEccCCCCCCCCccC
Q 029635          153 YKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK  189 (190)
Q Consensus       153 yki~~~~iLVIhDDLdLp~GkirlK~gGs~~GHNGLK  189 (190)
                      |+++++++||||||||||+|++|||.+||++||||||
T Consensus        81 y~i~~~~ilVvhDdLdl~~G~vrlk~~Gg~gGHNGlK  117 (190)
T COG0193          81 YKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLK  117 (190)
T ss_pred             hCCCHHHEEEEeeccCCCCceEEEEcCCCCCCcccHH
Confidence            9999999999999999999999999999999999997

>cd02406 CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

Probab=100.00  E-value=1e-50  Score=340.15  Aligned_cols=116  Identities=65%  Similarity=1.200  Sum_probs=111.0

Q ss_pred             CCeeEEEecCcccCCCcCcchHHHHHHHHHHHHhCCCCCccceeeEEEEEEECCeEEEEEeCCchhhhchHHHHHHHHHc
Q 029635           74 HPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYY  153 (190)
Q Consensus        74 ~~~LIVGLGNPG~kY~~TRHNvGf~vlD~La~~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP~TyMNlSG~aV~~i~~~y  153 (190)
                      +|+|||||||||++|++|||||||+++|.||++++.++++.++++.++++.+.+++|+|+||+||||+||++|.+++++|
T Consensus         1 ~~~LIvGLGNPG~~Y~~TRHNiGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~y   80 (191)
T cd02406           1 TPWLIAGLGNPGNKYKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLAKPQTYMNYSGESVGPLAAYY   80 (191)
T ss_pred             CcEEEEEcCCCchhhCcCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeEEEEEeCCCchhcCHHHHHHHHHHh
Confidence            47899999999999999999999999999999999887666778888999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeccCCCCcceEEEccCCCCCCCCccC
Q 029635          154 KIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK  189 (190)
Q Consensus       154 ki~~~~iLVIhDDLdLp~GkirlK~gGs~~GHNGLK  189 (190)
                      +++++++||||||||||+|++|+|.+||++||||||
T Consensus        81 ki~~~~ilVihDdldl~~G~irlk~gGs~gGHNGlk  116 (191)
T cd02406          81 KVPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQ  116 (191)
T ss_pred             CCCHHHEEEEEECCCCCCCeEEEcCCCCCCCcCCHH
Confidence            999999999999999999999999999999999997

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH).

>cd00462 PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

Probab=100.00  E-value=1.1e-49  Score=328.40  Aligned_cols=113  Identities=56%  Similarity=0.949  Sum_probs=108.6

Q ss_pred             eEEEecCcccCCCcCcchHHHHHHHHHHHHhCCCCCccceeeEEEEEEECCeEEEEEeCCchhhhchHHHHHHHHHcCCC
Q 029635           77 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIP  156 (190)
Q Consensus        77 LIVGLGNPG~kY~~TRHNvGf~vlD~La~~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP~TyMNlSG~aV~~i~~~yki~  156 (190)
                      |||||||||++|++|||||||+++|.||++++..+.+.++++.++++.+.+++++|+||+||||+||++|.+++++|+++
T Consensus         1 LIvGLGNPG~~Y~~TRHNvGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i~   80 (171)
T cd00462           1 LIVGLGNPGPKYENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQTYMNLSGEAVAALANFYKIP   80 (171)
T ss_pred             CEEEECCCCcccCcCchHHHHHHHHHHHHHcCCCCCccccCEEEEEEEECCEEEEEEeCCcccccccHHHHHHHHhcCCC
Confidence            69999999999999999999999999999999888766667889999999999999999999999999999999999999


Q ss_pred             CCcEEEEeccCCCCcceEEEccCCCCCCCCccC
Q 029635          157 LKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK  189 (190)
Q Consensus       157 ~~~iLVIhDDLdLp~GkirlK~gGs~~GHNGLK  189 (190)
                      ++++||||||||||+|++|+|.+||++||||||
T Consensus        81 ~~~ilVihDdldl~~G~vrlk~~G~~gGHNGlk  113 (171)
T cd00462          81 PEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLK  113 (171)
T ss_pred             hhHEEEEEecCCCCCceEEEeCCCCCCCCCCHH
Confidence            999999999999999999999999999999997

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts.

>TIGR00447 pth peptidyl-tRNA hydrolase

Probab=100.00  E-value=2.1e-49  Score=330.97  Aligned_cols=115  Identities=48%  Similarity=0.829  Sum_probs=108.9

Q ss_pred             CeeEEEecCcccCCCcCcchHHHHHHHHHHHHhCCCCCc-cceeeEEEEEEECCeEEEEEeCCchhhhchHHHHHHHHHc
Q 029635           75 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYY  153 (190)
Q Consensus        75 ~~LIVGLGNPG~kY~~TRHNvGf~vlD~La~~~~~~~~~-~~~~~~~~~~~i~~~~v~L~KP~TyMNlSG~aV~~i~~~y  153 (190)
                      |+|||||||||++|++|||||||+++|.||++++.++++ .++.+.+++..+.+++|+|+||+||||+||++|.+++++|
T Consensus         1 ~~LIvGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~   80 (188)
T TIGR00447         1 IKLIVGLGNPGKKYAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKPLTYMNLSGEAVRALASFY   80 (188)
T ss_pred             CEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCcCCcccccceEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHHh
Confidence            689999999999999999999999999999999988753 4567788888888999999999999999999999999999


Q ss_pred             CCCCCcEEEEeccCCCCcceEEEccCCCCCCCCccC
Q 029635          154 KIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK  189 (190)
Q Consensus       154 ki~~~~iLVIhDDLdLp~GkirlK~gGs~~GHNGLK  189 (190)
                      +++++++||||||||||+|++|+|.+||++||||||
T Consensus        81 ~i~~~~ilVihDdldl~~G~irlk~~G~~gGHNGlk  116 (188)
T TIGR00447        81 RIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLK  116 (188)
T ss_pred             CCChHHEEEEEecCCCCCceEEEecCCCCCCcCCHH
Confidence            999999999999999999999999999999999997

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function.

>PRK05426 peptidyl-tRNA hydrolase; Provisional

Probab=100.00  E-value=1.7e-48  Score=325.53  Aligned_cols=116  Identities=52%  Similarity=0.849  Sum_probs=109.0

Q ss_pred             CCeeEEEecCcccCCCcCcchHHHHHHHHHHHHhCCCCC-ccceeeEEEEEEECCeEEEEEeCCchhhhchHHHHHHHHH
Q 029635           74 HPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVS-SVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSY  152 (190)
Q Consensus        74 ~~~LIVGLGNPG~kY~~TRHNvGf~vlD~La~~~~~~~~-~~~~~~~~~~~~i~~~~v~L~KP~TyMNlSG~aV~~i~~~  152 (190)
                      .++|||||||||++|++|||||||+++|.||++++..+. ..++.+.++++.+.+++++|+||+||||+||++|.+++++
T Consensus         1 ~~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~   80 (189)
T PRK05426          1 MMKLIVGLGNPGPEYANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILLKPQTYMNLSGKAVAALANF   80 (189)
T ss_pred             CcEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCCcccccccEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHH
Confidence            368999999999999999999999999999999877654 3466788999999889999999999999999999999999


Q ss_pred             cCCCCCcEEEEeccCCCCcceEEEccCCCCCCCCccC
Q 029635          153 YKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK  189 (190)
Q Consensus       153 yki~~~~iLVIhDDLdLp~GkirlK~gGs~~GHNGLK  189 (190)
                      |+++++++||||||+|+|+|++|+|.+||++||||||
T Consensus        81 ~~i~~~~ilVihDdldl~~G~~r~k~gGs~~GHNGlk  117 (189)
T PRK05426         81 YKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLK  117 (189)
T ss_pred             hCCCHHHEEEEEecCCCCCceEEEecCCCCCCcCCHH
Confidence            9999999999999999999999999999999999997

>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3

Probab=100.00  E-value=4e-47  Score=314.78  Aligned_cols=113  Identities=54%  Similarity=0.901  Sum_probs=97.3

Q ss_pred             eEEEecCcccCCCcCcchHHHHHHHHHHHHhCCCCCccc-eeeEEEEEEECCeEEEEEeCCchhhhchHHHHHHHHHcCC
Q 029635           77 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKI  155 (190)
Q Consensus        77 LIVGLGNPG~kY~~TRHNvGf~vlD~La~~~~~~~~~~~-~~~~~~~~~i~~~~v~L~KP~TyMNlSG~aV~~i~~~yki  155 (190)
                      |||||||||++|++|||||||+++|.||+.++.++.+.+ +++.++.+.+.+++++|+||+||||+||.+|++++++|++
T Consensus         1 LivGLGNPG~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i   80 (184)
T PF01195_consen    1 LIVGLGNPGPKYENTRHNVGFMVLDRLASRLGLSWKQKKKFKSLISEGSIKGEKVILLKPQTYMNLSGKAVKKILSFYKI   80 (184)
T ss_dssp             EEEE---SSTTTTTSGGGHHHHHHHHHHHHTT---EEEGGGTEEEEEEEETTEEEEEEEESSTGGGHHHHHHHHHHHTT-
T ss_pred             CEEEcCCCChhhcCCCcCchHHHHHHHHHHhCCCccccccceeEEEEEEEeeeeEEEEcCCCeEeCccHhHHHHHHHhCC
Confidence            799999999999999999999999999999998875543 6788888889999999999999999999999999999999


Q ss_pred             CCCcEEEEeccCCCCcceEEEccCCCCCCCCccC
Q 029635          156 PLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK  189 (190)
Q Consensus       156 ~~~~iLVIhDDLdLp~GkirlK~gGs~~GHNGLK  189 (190)
                      +++++||||||+|+|+|++|+|.+||++||||||
T Consensus        81 ~~~~ilVihDdldl~~G~irlk~~Gs~~GHNGlk  114 (184)
T PF01195_consen   81 PPENILVIHDDLDLPLGKIRLKKGGSSGGHNGLK  114 (184)
T ss_dssp             -GGGEEEEEEETTSSTTEEEEEESS--TT-HHHH
T ss_pred             CcceEEEEEeccCCCCCeEEEccCCCCCCCCCHH
Confidence            9999999999999999999999999999999996

1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....

>KOG2255 consensus Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.9e-39  Score=271.75  Aligned_cols=116  Identities=54%  Similarity=1.062  Sum_probs=109.0

Q ss_pred             CCeeEEEecCcccCCCcCcchHHHHHHHHHHHHhCCCCCccceeeEEEEEEECCeEEEEEeCCchhhhchHHHHHHHHHc
Q 029635           74 HPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYY  153 (190)
Q Consensus        74 ~~~LIVGLGNPG~kY~~TRHNvGf~vlD~La~~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP~TyMNlSG~aV~~i~~~y  153 (190)
                      .+|+|+||||||++|.+|||||||.++|.||++++++..+.+.+...+-+.+++.++++++|++|||.||++|.+++..|
T Consensus        38 k~wli~GLGNPg~~y~gTRHnvG~~Ml~~larrlgv~~nt~s~~a~~~l~~v~d~~~~llrp~qymN~SgesV~kva~~y  117 (224)
T KOG2255|consen   38 KPWLIVGLGNPGSKYVGTRHNVGFEMLDMLARRLGVPMNTISSKALEGLGLVGDVPILLLRPQQYMNFSGESVGKVAALY  117 (224)
T ss_pred             CceEEEecCCCcccccccchhhHHHHHHHHHHHhCCcccccCcccccceeeecceeeEeeCcHhhhccccchhhhhHHhh
Confidence            38999999999999999999999999999999999887665555666777889999999999999999999999999999


Q ss_pred             CCCCCcEEEEeccCCCCcceEEEccCCCCCCCCccC
Q 029635          154 KIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK  189 (190)
Q Consensus       154 ki~~~~iLVIhDDLdLp~GkirlK~gGs~~GHNGLK  189 (190)
                      +++.++++||||||++|+|+++||.+||++||||+|
T Consensus       118 ~i~~~~ivvIhDEl~l~~Gkl~Lrp~gs~rgHNGvr  153 (224)
T KOG2255|consen  118 KIPLRHIVVIHDELELPLGKLRLRPGGSHRGHNGVR  153 (224)
T ss_pred             cchheeEEEEeccccCcCceEEeccCCCccccccHH
Confidence            999999999999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
1ryn_A	202	Structure Of The Chloroplast Group Ii Intron Splici		1e-36
1ryb_A	205	Crystal Structure Of The Chloroplast Group Ii Intro		4e-36
1rym_A	212	Structure Of The Group Ii Intron Splicing Factor Cr		1e-35
2lgj_A	191	Solution Structure Of Mspth Length = 191		1e-18
3v2i_A	222	Structure Of A Peptidyl-Trna Hydrolase (Pth) From B		5e-18
3kjz_A	191	Crystal Structure Of Native Peptidyl-Trna Hydrolase		6e-18
2jrc_A	204	Solution Structure Of Peptidyl-Trna Hydrolase From		1e-17
2z2i_A	191	Crystal Structure Of Peptidyl-Trna Hydrolase From M		2e-17
4dhw_A	194	Crystal Structure Of Peptidyl-Trna Hydrolase From P		9e-15
4fyj_A	199	Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hy		9e-15
4fop_A	193	Crystal Structure Of Peptidyl-Trna Hydrolase From A		1e-14
2pth_A	193	Peptidyl-Trna Hydrolase From Escherichia Coli Lengt		5e-14
3vjr_A	197	Crystal Structure Of Peptidyl-Trna Hydrolase From E		6e-14
3ofv_A	211	Crystal Structure Of Peptidyl-Trna Hydrolase From E		6e-14
3nea_A	207	Crystal Structure Of Peptidyl-Trna Hydrolase From F		1e-13

>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 202

Iteration: 1
 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 65/115 (56%), Positives = 88/115 (76%)
Query: 75  PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
           PWLI GLGNPG +Y GTRHNVGFEMVD IA  EGI++++  FK+  G G IG VPV++ K
Sbjct: 5   PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPVLVVK 64
Query: 135 PQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
           PQ++MN SG+++G + +YY++PL+ +L+I+DD  LP   +RL  KGGHG HNG +
Sbjct: 65  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQ 119

>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 205

Iteration: 1
 Score =  147 bits (370), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 88/115 (76%)
Query: 75  PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
           PWLI GLGNPG +Y GTRHNVGFEMVD IA  EGI+++++  K+  G G IG VPV++ K
Sbjct: 17  PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 76
Query: 135 PQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
           PQ++MN SG+++G + +YY++PL+ +L+I+DD  LP   +RL  KGGHG HNG +
Sbjct: 77  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQ 131

>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2 Length = 212

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 87/115 (75%)
Query: 75  PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
           PWLI GLGNPG +Y GTRHNVGFEMVD IA  EGI++++   K+  G G IG VPV++ K
Sbjct: 17  PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTEQSKSLLGIGSIGEVPVLVVK 76
Query: 135 PQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
           PQ++MN SG+++G + +YY++PL+ +L+I+DD  LP   +RL  KGGHG HNG +
Sbjct: 77  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQ 131

>pdb|2LGJ|A Chain A, Solution Structure Of Mspth Length = 191

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 3/105 (2%)
Query: 74  HPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFK--AHFGKGFIGNVPVM 131
            P L+VGLGNPG  Y  TRHN+GF + D +A   G S   V+ K  A    G +    V+
Sbjct: 3   EPLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGTSVV 61
Query: 132 LAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRL 176
           LAKP+ +MN SG+ VG +  +Y +P +Q++VI D+LD+ F ++RL
Sbjct: 62  LAKPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRL 106

>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From Burkholderia Thailandensis Length = 222

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 77  LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKP 135
           LIVGLGNPG +Y  TRHN GF +VD +A   G ++     F   + K  +    V L +P
Sbjct: 25  LIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEP 84
Query: 136 QTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRL 176
           QT+MN SGQSV ++  ++KI   ++LV  D+LDLP   ++L
Sbjct: 85  QTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKL 125

>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From Mycobacterium Smegmatis Length = 191

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 3/105 (2%)
Query: 74  HPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFK--AHFGKGFIGNVPVM 131
            P L+VGLGNPG  Y  TRHN+GF + D +A   G S   V+ K  A    G +    V+
Sbjct: 3   EPLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGTTVV 61
Query: 132 LAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRL 176
           LAKP+  MN SG+ VG +  +Y +P +Q++VI D+LD+ F ++RL
Sbjct: 62  LAKPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRL 106

>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis H37rv Length = 204

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 61/109 (55%), Gaps = 11/109 (10%)
Query: 74  HPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAH------FGKGFIGN 127
            P L+VGLGNPG  Y  TRHN+GF + D +A   G       FKAH         G    
Sbjct: 3   EPLLVVGLGNPGANYARTRHNLGFVVADLLAARLG-----AKFKAHKRSGAEVATGRSAG 57
Query: 128 VPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRL 176
             ++LAKP+ +MN SG+ +G +  +Y +    ++VI DDLDL F ++RL
Sbjct: 58  RSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRL 106

>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis Length = 191

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 61/109 (55%), Gaps = 11/109 (10%)
Query: 74  HPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAH------FGKGFIGN 127
            P L+VGLGNPG  Y  TRHN+GF + D +A   G       FKAH         G    
Sbjct: 3   EPLLVVGLGNPGANYARTRHNLGFVVADLLAARLG-----AKFKAHKRSGAEVATGRSAG 57
Query: 128 VPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRL 176
             ++LAKP+ +MN SG+ +G +  +Y +    ++VI DDLDL F ++RL
Sbjct: 58  RSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRL 106

>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 77  LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGIS-VSSVNFKAHFGKGFIGNVPVMLAKP 135
           LIVGLGNPG +Y+ TRHN G   V+ +A A+G+S V+   +    GK       V L  P
Sbjct: 6   LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIP 65
Query: 136 QTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLP 170
            T+MN SGQSV ++  +++I    +LV  D+LD+P
Sbjct: 66  TTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMP 100

>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase Length = 199

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 77  LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGIS-VSSVNFKAHFGKGFIGNVPVMLAKP 135
           LIVGLGNPG +Y+ TRHN G   V+ +A A+G+S V+   +    GK       V L  P
Sbjct: 12  LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIP 71
Query: 136 QTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLP 170
            T+MN SGQSV ++  +++I    +LV  D+LD+P
Sbjct: 72  TTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMP 106

>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii At 1.86 A Resolution Length = 193

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 77  LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKP 135
           LIVGLGNPG +Y  TRHN GF  V+ +A+  GI++ +   F    G+G I    V L  P
Sbjct: 6   LIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLP 65
Query: 136 QTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRL 176
            T+MN SGQSV     +Y+I  + +L+  D+LD+    +RL
Sbjct: 66  MTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRL 106

>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli Length = 193

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 77  LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKP 135
           LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +G   V L  P
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVP 63
Query: 136 QTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLP 170
            TFMN SG++V ++ S+++I   ++LV  D+LDLP
Sbjct: 64  TTFMNLSGKAVAAMASFFRINPDEILVAHDELDLP 98

>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli In Complex With The Cca-Acceptor-T[psi]c Domain Of Trna Length = 197

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 77  LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKP 135
           LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +G   V L  P
Sbjct: 8   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVP 67
Query: 136 QTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLP 170
            TFMN SG++V ++ S+++I   ++LV  D+LDLP
Sbjct: 68  TTFMNLSGKAVAAMASFFRINPDEILVAHDELDLP 102

>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli, I222 Crystal Form Length = 211

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 77  LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKP 135
           LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +G   V L  P
Sbjct: 25  LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVP 84
Query: 136 QTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLP 170
            TFMN SG++V ++ S+++I   ++LV  D+LDLP
Sbjct: 85  TTFMNLSGKAVAAMASFFRINPDEILVAHDELDLP 119

>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Francisella Tularensis Length = 207

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 77  LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSV-NFKAHFGKGFIGNVPVMLAKP 135
           +I+GLGN GK+Y  TRHNVG   +  IA+    S SS      +  K  I    V+L  P
Sbjct: 25  MIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFP 84
Query: 136 QTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRL 176
            T+MN SG +V  + ++YKI   ++LV+ D+LD+   ++RL
Sbjct: 85  TTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRL 125
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	1e-68
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	3e-64
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	4e-64
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	1e-62
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	1e-62
4fop_A	193	PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter	2e-62
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	2e-61

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A Length = 205

 Score =  207 bits (528), Expect = 1e-68
 Identities = 64/115 (55%), Positives = 88/115 (76%)

Query: 75  PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
           PWLI GLGNPG +Y GTRHNVGFEMVD IA  EGI+++++  K+  G G IG VPV++ K
Sbjct: 17  PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 76

Query: 135 PQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
           PQ++MN SG+++G + +YY++PL+ +L+I+DD  LP   +RL  KGGHG HNG +
Sbjct: 77  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQ 131

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A Length = 194

 Score =  195 bits (498), Expect = 3e-64
 Identities = 50/116 (43%), Positives = 69/116 (59%), Gaps = 1/116 (0%)

Query: 75  PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGIS-VSSVNFKAHFGKGFIGNVPVMLA 133
             LIVGLGNPG +Y+ TRHN G   V+ +A A+G+S V+   +    GK       V L 
Sbjct: 4   VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLL 63

Query: 134 KPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
            P T+MN SGQSV ++  +++I    +LV  D+LD+P    +L   GGHGGHNG +
Sbjct: 64  IPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLR 119

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A Length = 191

 Score =  195 bits (497), Expect = 4e-64
 Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 1/116 (0%)

Query: 75  PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLA 133
           P L+VGLGNPG  Y  TRHN+GF + D +A   G    +     A    G      ++LA
Sbjct: 4   PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63

Query: 134 KPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
           KP+ +MN SG+ +G +  +Y +    ++VI DDLDL F ++RL   GG GGHNG +
Sbjct: 64  KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLR 119

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264} Length = 222

 Score =  192 bits (490), Expect = 1e-62
 Identities = 52/127 (40%), Positives = 73/127 (57%), Gaps = 1/127 (0%)

Query: 64  VSPKPKQQQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGK 122
           +  + +       LIVGLGNPG +Y  TRHN GF +VD +A   G ++     F   + K
Sbjct: 12  LEAQTQGPGSMIKLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAK 71

Query: 123 GFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGH 182
             +    V L +PQT+MN SGQSV ++  ++KI   ++LV  D+LDLP   ++L   GG 
Sbjct: 72  ARLYGEEVHLLEPQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGS 131

Query: 183 GGHNGYK 189
           GGHNG K
Sbjct: 132 GGHNGLK 138

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A Length = 193

 Score =  191 bits (487), Expect = 1e-62
 Identities = 48/115 (41%), Positives = 65/115 (56%), Gaps = 1/115 (0%)

Query: 76  WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAK 134
            LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +G   V L  
Sbjct: 3   KLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLV 62

Query: 135 PQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
           P TFMN SG++V ++ S+++I   ++LV  D+LDLP    +    GGHGGHNG K
Sbjct: 63  PTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLK 117

>4fop_A PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter baumannii} Length = 193

 Score =  190 bits (486), Expect = 2e-62
 Identities = 51/115 (44%), Positives = 69/115 (60%), Gaps = 1/115 (0%)

Query: 76  WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAK 134
            LIVGLGNPG +Y  TRHN GF  V+ +A+  GI++ +   F    G+G I    V L  
Sbjct: 5   SLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLL 64

Query: 135 PQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
           P T+MN SGQSV     +Y+I  + +L+  D+LD+    +RL   GGHGGHNG +
Sbjct: 65  PMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLR 119

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp} Length = 207

 Score =  188 bits (481), Expect = 2e-61
 Identities = 48/116 (41%), Positives = 68/116 (58%), Gaps = 1/116 (0%)

Query: 75  PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLA 133
             +I+GLGN GK+Y  TRHNVG   +  IA+    S SS      +  K  I    V+L 
Sbjct: 23  IKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLV 82

Query: 134 KPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK 189
            P T+MN SG +V  + ++YKI   ++LV+ D+LD+   ++RL   GGHGGHNG +
Sbjct: 83  FPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLR 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	100.0
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	100.0
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	100.0
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	100.0
4fyj_A	199	PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas a	100.0
4hoy_A	193	PTH, peptidyl-tRNA hydrolase; enzyme, molecular co	100.0
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	100.0
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	100.0

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A

Probab=100.00  E-value=6.7e-52  Score=346.34  Aligned_cols=115  Identities=42%  Similarity=0.659  Sum_probs=110.6

Q ss_pred             CeeEEEecCcccCCCcCcchHHHHHHHHHHHHhCCCCC-ccceeeEEEEEEECCeEEEEEeCCchhhhchHHHHHHHHHc
Q 029635           75 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVS-SVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYY  153 (190)
Q Consensus        75 ~~LIVGLGNPG~kY~~TRHNvGf~vlD~La~~~~~~~~-~~~~~~~~~~~~i~~~~v~L~KP~TyMNlSG~aV~~i~~~y  153 (190)
                      |+|||||||||++|++|||||||+++|.||++++.++. +.++++.++++.+.+++|+|+||+||||+||++|+++++||
T Consensus         2 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~y   81 (193)
T 2pth_A            2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF   81 (193)
T ss_dssp             CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred             cEEEEEECCCCcccccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHHh
Confidence            68999999999999999999999999999999999876 45688999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeccCCCCcceEEEccCCCCCCCCccC
Q 029635          154 KIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK  189 (190)
Q Consensus       154 ki~~~~iLVIhDDLdLp~GkirlK~gGs~~GHNGLK  189 (190)
                      +|++++|||||||||||+|++|+|.+||++||||||
T Consensus        82 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlk  117 (193)
T 2pth_A           82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLK  117 (193)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHH
T ss_pred             CCCHHHEEEEecccCCCCceEEEecCCCCCCCCCHH
Confidence            999999999999999999999999999999999997

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A

Probab=100.00  E-value=1.6e-51  Score=347.13  Aligned_cols=119  Identities=54%  Similarity=1.049  Sum_probs=113.1

Q ss_pred             CCCCCeeEEEecCcccCCCcCcchHHHHHHHHHHHHhCCCCCccceeeEEEEEEECCeEEEEEeCCchhhhchHHHHHHH
Q 029635           71 QQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIV  150 (190)
Q Consensus        71 ~~~~~~LIVGLGNPG~kY~~TRHNvGf~vlD~La~~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP~TyMNlSG~aV~~i~  150 (190)
                      .+..++|||||||||++|++|||||||+++|.||++++.++++.++++.++++.+.+++|+|+||+||||+||++|++++
T Consensus        13 ~~~~~~LIVGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~   92 (205)
T 1ryb_A           13 VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLA   92 (205)
T ss_dssp             --CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCChhhccCchHHHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHH
Confidence            34578999999999999999999999999999999999988777788999999999999999999999999999999999


Q ss_pred             HHcCCCCCcEEEEeccCCCCcceEEEccCCCCCCCCccC
Q 029635          151 SYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK  189 (190)
Q Consensus       151 ~~yki~~~~iLVIhDDLdLp~GkirlK~gGs~~GHNGLK  189 (190)
                      +||+|++++|||||||||||+|++|+|.+||++||||||
T Consensus        93 ~~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGLk  131 (205)
T 1ryb_A           93 AYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQ  131 (205)
T ss_dssp             HHTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHH
T ss_pred             HHhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCHH
Confidence            999999999999999999999999999999999999997

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A

Probab=100.00  E-value=1e-51  Score=344.85  Aligned_cols=116  Identities=41%  Similarity=0.783  Sum_probs=110.9

Q ss_pred             CCeeEEEecCcccCCCcCcchHHHHHHHHHHHHhCCCCCc-cceeeEEEEEEECCeEEEEEeCCchhhhchHHHHHHHHH
Q 029635           74 HPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSY  152 (190)
Q Consensus        74 ~~~LIVGLGNPG~kY~~TRHNvGf~vlD~La~~~~~~~~~-~~~~~~~~~~~i~~~~v~L~KP~TyMNlSG~aV~~i~~~  152 (190)
                      .|+|||||||||++|++|||||||+++|.||++++.++.+ +++++.++++.+.+++|+|+||+||||+||++|++++++
T Consensus         3 ~m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~   82 (191)
T 2z2i_A            3 EPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKF   82 (191)
T ss_dssp             SCEEEEECCCCSHHHHTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHH
T ss_pred             ccEEEEEECCCCchhccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHH
Confidence            5789999999999999999999999999999999998764 357889999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeccCCCCcceEEEccCCCCCCCCccC
Q 029635          153 YKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK  189 (190)
Q Consensus       153 yki~~~~iLVIhDDLdLp~GkirlK~gGs~~GHNGLK  189 (190)
                      |+|+++++||||||||||+|++|+|.+||++||||||
T Consensus        83 yki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlk  119 (191)
T 2z2i_A           83 YSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLR  119 (191)
T ss_dssp             TTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHH
T ss_pred             hCCCHHHEEEEecccCCCCceEEEecCCCCCCcCCHH
Confidence            9999999999999999999999999999999999997

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}

Probab=100.00  E-value=3.8e-51  Score=345.39  Aligned_cols=116  Identities=41%  Similarity=0.678  Sum_probs=111.5

Q ss_pred             CCeeEEEecCcccCCCcCcchHHHHHHHHHHHHhCCCCCcc-ceeeEEEEEEECCeEEEEEeCCchhhhchHHHHHHHHH
Q 029635           74 HPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSV-NFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSY  152 (190)
Q Consensus        74 ~~~LIVGLGNPG~kY~~TRHNvGf~vlD~La~~~~~~~~~~-~~~~~~~~~~i~~~~v~L~KP~TyMNlSG~aV~~i~~~  152 (190)
                      .++|||||||||++|++|||||||+++|.||++++.++.+. ++++.++++.+++++|+|+||+||||+||++|+++++|
T Consensus        22 ~~~LIVGLGNPG~~Y~~TRHNvGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~  101 (207)
T 3nea_A           22 KIKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANF  101 (207)
T ss_dssp             CCCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHHH
Confidence            57999999999999999999999999999999999988655 67889999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeccCCCCcceEEEccCCCCCCCCccC
Q 029635          153 YKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK  189 (190)
Q Consensus       153 yki~~~~iLVIhDDLdLp~GkirlK~gGs~~GHNGLK  189 (190)
                      |+|+++++||||||||||+|++|+|.+||++||||||
T Consensus       102 yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLk  138 (207)
T 3nea_A          102 YKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLR  138 (207)
T ss_dssp             HTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHH
T ss_pred             hCCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCHH
Confidence            9999999999999999999999999999999999997

>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=2.1e-50  Score=339.01  Aligned_cols=115  Identities=43%  Similarity=0.710  Sum_probs=109.7

Q ss_pred             CeeEEEecCcccCCCcCcchHHHHHHHHHHHHhCCCCCc-cceeeEEEEEEECCeEEEEEeCCchhhhchHHHHHHHHHc
Q 029635           75 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYY  153 (190)
Q Consensus        75 ~~LIVGLGNPG~kY~~TRHNvGf~vlD~La~~~~~~~~~-~~~~~~~~~~~i~~~~v~L~KP~TyMNlSG~aV~~i~~~y  153 (190)
                      ..|||||||||++|++|||||||+++|.||++++.++.+ .+++++++++.+++++|+|+||+||||+||++|+++++||
T Consensus        10 ~~lIvGLGNPG~~Y~~TRHNvGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~y   89 (199)
T 4fyj_A           10 VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFF   89 (199)
T ss_dssp             CCEEEECCCCSGGGTTCGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHT
T ss_pred             eeEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHHh
Confidence            459999999999999999999999999999999988754 4677899999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeccCCCCcceEEEccCCCCCCCCccC
Q 029635          154 KIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK  189 (190)
Q Consensus       154 ki~~~~iLVIhDDLdLp~GkirlK~gGs~~GHNGLK  189 (190)
                      +|+++++||||||||||+|++|+|.+||++||||||
T Consensus        90 ki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLk  125 (199)
T 4fyj_A           90 RIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLR  125 (199)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHH
T ss_pred             CCCHHHEEEEEecCCCCCceEEEecCCCCCCCCCHH
Confidence            999999999999999999999999999999999997

>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A

Probab=100.00  E-value=3.1e-50  Score=336.32  Aligned_cols=116  Identities=44%  Similarity=0.739  Sum_probs=110.6

Q ss_pred             CCeeEEEecCcccCCCcCcchHHHHHHHHHHHHhCCCCCc-cceeeEEEEEEECCeEEEEEeCCchhhhchHHHHHHHHH
Q 029635           74 HPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSY  152 (190)
Q Consensus        74 ~~~LIVGLGNPG~kY~~TRHNvGf~vlD~La~~~~~~~~~-~~~~~~~~~~~i~~~~v~L~KP~TyMNlSG~aV~~i~~~  152 (190)
                      ..+|||||||||++|++|||||||+++|.||++++.+++. +++.+.++++.+.+++++|+||+||||+||++|++++++
T Consensus         3 ~ikLIVGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~   82 (193)
T 4hoy_A            3 NISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKF   82 (193)
T ss_dssp             CCCEEEECCCCSTTTTTBGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHH
T ss_pred             CceEEEEcCCCchhhCcCcccHHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHH
Confidence            3579999999999999999999999999999999998754 467788999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeccCCCCcceEEEccCCCCCCCCccC
Q 029635          153 YKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK  189 (190)
Q Consensus       153 yki~~~~iLVIhDDLdLp~GkirlK~gGs~~GHNGLK  189 (190)
                      |+++++++||||||||||+|++|+|.+||++||||||
T Consensus        83 ~ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGlk  119 (193)
T 4hoy_A           83 YQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLR  119 (193)
T ss_dssp             TTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHH
T ss_pred             cCCCchheEEeeeccccccCceeeccCCCCCCcCCcc
Confidence            9999999999999999999999999999999999997

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}

Probab=100.00  E-value=3.6e-50  Score=342.46  Aligned_cols=116  Identities=45%  Similarity=0.739  Sum_probs=110.9

Q ss_pred             CCeeEEEecCcccCCCcCcchHHHHHHHHHHHHhCCCCCcc-ceeeEEEEEEECCeEEEEEeCCchhhhchHHHHHHHHH
Q 029635           74 HPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSV-NFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSY  152 (190)
Q Consensus        74 ~~~LIVGLGNPG~kY~~TRHNvGf~vlD~La~~~~~~~~~~-~~~~~~~~~~i~~~~v~L~KP~TyMNlSG~aV~~i~~~  152 (190)
                      .++|||||||||++|++|||||||+++|.||++++.++.+. ++++.++++.+.+++|+|+||+||||+||++|+++++|
T Consensus        22 ~~~LIVGLGNPG~~Y~~TRHNiGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~  101 (222)
T 3v2i_A           22 MIKLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAHF  101 (222)
T ss_dssp             CCCEEEECCCCSGGGTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHH
T ss_pred             eEEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHHH
Confidence            56899999999999999999999999999999999987653 57889999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEeccCCCCcceEEEccCCCCCCCCccC
Q 029635          153 YKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK  189 (190)
Q Consensus       153 yki~~~~iLVIhDDLdLp~GkirlK~gGs~~GHNGLK  189 (190)
                      |+|++++|||||||||||+|++|+|.+||++||||||
T Consensus       102 yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLK  138 (222)
T 3v2i_A          102 FKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLK  138 (222)
T ss_dssp             HTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHHH
T ss_pred             hCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCHH
Confidence            9999999999999999999999999999999999997

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=7.3e-52  Score=346.63  Aligned_cols=116  Identities=42%  Similarity=0.700  Sum_probs=110.0

Q ss_pred             CCeeEEEecCcccCCCcCcchHHHHHHHHHHHHhCCCCC-ccceeeEEEEEEECCeEEEEEeCCchhhhchHHHHHHHHH
Q 029635           74 HPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVS-SVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSY  152 (190)
Q Consensus        74 ~~~LIVGLGNPG~kY~~TRHNvGf~vlD~La~~~~~~~~-~~~~~~~~~~~~i~~~~v~L~KP~TyMNlSG~aV~~i~~~  152 (190)
                      .|+|||||||||++|++|||||||+++|.||++++.++. +.++++.++++.+.+++|+|+||+||||+||++|+++++|
T Consensus         3 mm~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~f   82 (194)
T 4fno_A            3 AVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGF   82 (194)
Confidence            467999999999999999999999999999999998876 3467888888888889999999999999999999999999


Q ss_pred             cCCCCCcEEEEeccCCCCcceEEEccCCCCCCCCccC
Q 029635          153 YKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK  189 (190)
Q Consensus       153 yki~~~~iLVIhDDLdLp~GkirlK~gGs~~GHNGLK  189 (190)
                      |+|+++++||||||||||+|++|+|.+||++||||||
T Consensus        83 yki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLk  119 (194)
T 4fno_A           83 FRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLR  119 (194)
Confidence            9999999999999999999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d1ryba_	191	c.56.3.1 (A:) Chloroplast group II intron splicing	1e-33
d2ptha_	193	c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia	2e-32

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]} Length = 191

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

 Score =  116 bits (291), Expect = 1e-33
 Identities = 64/113 (56%), Positives = 87/113 (76%)

Query: 75  PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAK 134
           PWLI GLGNPG +Y GTRHNVGFEMVD IA  EGI+++++  K+  G G IG VPV++ K
Sbjct: 3   PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 62

Query: 135 PQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNG 187
           PQ++MN SG+++G + +YY++PL+ +L+I+DD  LP   +RL  KGGHG HNG
Sbjct: 63  PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNG 115

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

 Score =  113 bits (283), Expect = 2e-32
 Identities = 47/112 (41%), Positives = 64/112 (57%), Gaps = 1/112 (0%)

Query: 77  LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVS-SVNFKAHFGKGFIGNVPVMLAKP 135
           LIVGL NPG +Y  TRHN G   VD +AE     +     F  +  +  +G   V L  P
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVP 63

Query: 136 QTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNG 187
            TFMN SG++V ++ S+++I   ++LV  D+LDLP    +    GGHGGHNG
Sbjct: 64  TTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNG 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d1ryba_	191	Chloroplast group II intron splicing factor Crs2 {	100.0
d2ptha_	193	Peptidyl-tRNA hydrolase {Escherichia coli [TaxId:	100.0
d1cfza_	162	Hydrogenase maturating endopeptidase HybD {Escheri	80.14

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=4.1e-49  Score=326.57  Aligned_cols=116  Identities=55%  Similarity=1.080  Sum_probs=111.5

Q ss_pred             CCeeEEEecCcccCCCcCcchHHHHHHHHHHHHhCCCCCccceeeEEEEEEECCeEEEEEeCCchhhhchHHHHHHHHHc
Q 029635           74 HPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYY  153 (190)
Q Consensus        74 ~~~LIVGLGNPG~kY~~TRHNvGf~vlD~La~~~~~~~~~~~~~~~~~~~~i~~~~v~L~KP~TyMNlSG~aV~~i~~~y  153 (190)
                      .+||||||||||++|++|||||||+++|.||++++.+++..++++.++...+++++|+|+||+||||+||++|++++++|
T Consensus         2 ~p~LIvGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~tyMN~SG~av~~~~~~~   81 (191)
T d1ryba_           2 TPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYY   81 (191)
T ss_dssp             CCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHT
T ss_pred             CceEEEEcCCCCccccCCccHHHHHHHHHHHHHcCCCcccccccceEEEEeccCceEEEEecCcccccccHHHHHHHHhh
Confidence            46999999999999999999999999999999999988777777888999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEeccCCCCcceEEEccCCCCCCCCccC
Q 029635          154 KIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK  189 (190)
Q Consensus       154 ki~~~~iLVIhDDLdLp~GkirlK~gGs~~GHNGLK  189 (190)
                      +++++++||||||||||+|++|+|.+||++||||||
T Consensus        82 ~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlk  117 (191)
T d1ryba_          82 QVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQ  117 (191)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHH
T ss_pred             ccCcceeEEEEcccccccCceeeccCCCCCcCcchh
Confidence            999999999999999999999999999999999996

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.7e-48  Score=320.88  Aligned_cols=115  Identities=42%  Similarity=0.659  Sum_probs=109.0

Q ss_pred             CeeEEEecCcccCCCcCcchHHHHHHHHHHHHhCCCCCc-cceeeEEEEEEECCeEEEEEeCCchhhhchHHHHHHHHHc
Q 029635           75 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYY  153 (190)
Q Consensus        75 ~~LIVGLGNPG~kY~~TRHNvGf~vlD~La~~~~~~~~~-~~~~~~~~~~~i~~~~v~L~KP~TyMNlSG~aV~~i~~~y  153 (190)
                      |+|||||||||++|++|||||||+++|.||++++.+++. +++.+.++...+.+++++|+||+||||+||.+|++++++|
T Consensus         2 mklivGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~   81 (193)
T d2ptha_           2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF   81 (193)
T ss_dssp             CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred             EEEEEECCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceeeeeeeecCceEEEEecceeccccchhHHHHHHHh
Confidence            679999999999999999999999999999999998764 3566788888899999999999999999999999999999


Q ss_pred             CCCCCcEEEEeccCCCCcceEEEccCCCCCCCCccC
Q 029635          154 KIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGYK  189 (190)
Q Consensus       154 ki~~~~iLVIhDDLdLp~GkirlK~gGs~~GHNGLK  189 (190)
                      +++++++||||||+|||+|++|+|.+||++||||||
T Consensus        82 ~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlk  117 (193)
T d2ptha_          82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLK  117 (193)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHH
T ss_pred             CCCHHHeEEEecchhccCCCcccccCCCccccccHH
Confidence            999999999999999999999999999999999986

>d1cfza_ c.56.1.1 (A:) Hydrogenase maturating endopeptidase HybD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: HybD-like
family: Hydrogenase maturating endopeptidase HybD
domain: Hydrogenase maturating endopeptidase HybD
species: Escherichia coli [TaxId: 562]

Probab=80.14  E-value=0.81  Score=33.94  Aligned_cols=30  Identities=27%  Similarity=0.377  Sum_probs=24.1

Q ss_pred             CeeEEEecCcccCCCcCcchHHHHHHHHHHHHhC
Q 029635           75 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEG  108 (190)
Q Consensus        75 ~~LIVGLGNPG~kY~~TRHNvGf~vlD~La~~~~  108 (190)
                      +.+|+|+|||-    ..-==+|..+++.|++++.
T Consensus         2 rilVlGiGN~l----~gDDgvG~~v~~~L~~~~~   31 (162)
T d1cfza_           2 RILVLGVGNIL----LTDEAIGVRIVEALEQRYI   31 (162)
T ss_dssp             CEEEEEESCTT----BGGGGHHHHHHHHHHHHEE
T ss_pred             eEEEEEECCcc----cccCcHHHHHHHHHHHhcC
Confidence            47899999993    2444599999999999864